BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038034
(422 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 72.0 bits (175), Expect = 6e-13, Method: Composition-based stats.
Identities = 26/47 (55%), Positives = 34/47 (72%)
Query: 113 EGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGHASCPLCR 159
+G+ECAV L++ ED E R LP+C H FH C+D WL H++CPLCR
Sbjct: 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 50
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 100 LPLFRFASLRGSKEGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGHASCPLCR 159
LP +RF E C V + FE ++LR+LP C H FH C+D+WL+ + +CP+CR
Sbjct: 9 LPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICR 67
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 56.6 bits (135), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/56 (46%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 114 GLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGHASCPLCRYKFDGRDRGS 169
GLEC V + E +R LP C H FH SCI WLE H SCP+CR G++ +
Sbjct: 15 GLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTAT 69
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 51.6 bits (122), Expect = 8e-07, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 116 ECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGHASCPLCRYKFDGR 165
+C + LS E+ E +R LP C H FH C+DQWL + CP+CR + +
Sbjct: 16 KCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 94 KAVIESLPLFRFASLRGS-KEGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGH 152
K I++LP G+ + + C + S++ ++ LP C H FH C+ WL+
Sbjct: 19 KESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKS 77
Query: 153 ASCPLCRYKF 162
+CP+CR F
Sbjct: 78 GTCPVCRCMF 87
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 116 ECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGHASCPLCRYKFDGRDRGS 169
EC + + D L+ C H+F CID+W + H +CP+CR + G + S
Sbjct: 17 ECCICMDGRAD-----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANESS 65
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 117 CAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGHASCPLC 158
CAV L F+ + L + P C+HAFH C+ +WLE CPLC
Sbjct: 18 CAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLC 58
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 36.6 bits (83), Expect = 0.026, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 136 CRHAFHMSCIDQWLEGHASCPL 157
C HAFH CI +WL+ CPL
Sbjct: 75 CNHAFHFHCISRWLKTRQVCPL 96
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 36.6 bits (83), Expect = 0.027, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 136 CRHAFHMSCIDQWLEGHASCPL 157
C HAFH CI +WL+ CPL
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 36.6 bits (83), Expect = 0.029, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 136 CRHAFHMSCIDQWLEGHASCPL 157
C HAFH CI +WL+ CPL
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 36.2 bits (82), Expect = 0.031, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 136 CRHAFHMSCIDQWLEGHASCPL 157
C HAFH CI +WL+ CPL
Sbjct: 65 CNHAFHFHCISRWLKTRQVCPL 86
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 36.2 bits (82), Expect = 0.032, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 136 CRHAFHMSCIDQWLEGHASCPL 157
C HAFH CI +WL+ CPL
Sbjct: 84 CNHAFHFHCISRWLKTRQVCPL 105
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 36.2 bits (82), Expect = 0.039, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 136 CRHAFHMSCIDQWLEGHASCPL 157
C HAFH CI +WL+ CPL
Sbjct: 57 CNHAFHFHCISRWLKTRQVCPL 78
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
Query: 136 CRHAFHMSCIDQWLEGHASCPLCRYKFDGRDRGSFSYS 173
C H+F CI++W++ CP+CR +D S +YS
Sbjct: 71 CAHSFCSYCINEWMKRKIECPICR-----KDIKSKTYS 103
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 35.8 bits (81), Expect = 0.048, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 124 FEDTEILRLLPKCRHAFHMSCIDQWLEGHASCPLCR 159
ED + C HAF CI +W+ + +CPLC+
Sbjct: 12 LEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCK 47
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
Query: 136 CRHAFHMSCIDQWLEGHASCPLCRYKFDGRDRGSFSYS 173
C H+F CI++W++ CP+CR +D S +YS
Sbjct: 71 CAHSFCSYCINEWMKRKIECPICR-----KDIKSKTYS 103
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 35.4 bits (80), Expect = 0.060, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 135 KCRHAFHMSCIDQWLEGHASCPLCR 159
+C H+FH C+ W++ + CPLC+
Sbjct: 47 ECNHSFHNCCMSLWVKQNNRCPLCQ 71
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 35.4 bits (80), Expect = 0.062, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 136 CRHAFHMSCIDQWLEGHASCPL 157
C HAFH CI +WL+ CPL
Sbjct: 67 CNHAFHFHCISRWLKTRQVCPL 88
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
Query: 136 CRHAFHMSCIDQWLEGHASCPLCRYKFDGRDRGSFSYS 173
C H+F CI++W++ CP+CR +D S +YS
Sbjct: 82 CAHSFCSYCINEWMKRKIECPICR-----KDIKSKTYS 114
>pdb|3LRQ|A Chain A, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|B Chain B, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|C Chain C, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|D Chain D, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d
Length = 100
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 35/89 (39%), Gaps = 8/89 (8%)
Query: 107 SLRGSKEGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWL-EGHASCPLCRYKFDGR 165
S+ E C + K D RL P C SCI +WL E A CP CR R
Sbjct: 15 SVESIAEVFRCFICXEKLRDA---RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR 71
Query: 166 D----RGSFSYSNSLRFLRIPSNLTEEPN 190
+ R + + L L++ S E N
Sbjct: 72 ELVNCRWAEEVTQQLDTLQLCSLTKHEEN 100
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 32.0 bits (71), Expect = 0.68, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 110 GSKEGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGHASCPLC 158
GS C + L + ++ + C H H +C ++ L+ CPLC
Sbjct: 1 GSSGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 31.6 bits (70), Expect = 0.92, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 124 FEDTEILRLLPKCRHAFHMSCIDQWLEGHASCPLC 158
FE I ++P+C H + CI ++L CP C
Sbjct: 29 FEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTC 63
>pdb|2D8S|A Chain A, Solution Structure Of The Ring Domain Of The Human
Cellular Modulator Of Immune Recognition Protein
Length = 80
Score = 30.8 bits (68), Expect = 1.4, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 138 HAFHMSCIDQWLEGHAS--CPLCRYKF 162
H H +C+ QW++ + C LC+Y+F
Sbjct: 42 HFVHQACLQQWIKSSDTRCCELCKYEF 68
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 30.8 bits (68), Expect = 1.5, Method: Composition-based stats.
Identities = 11/44 (25%), Positives = 21/44 (47%)
Query: 117 CAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGHASCPLCRY 160
C + L + ++ + C H H +C ++ L+ CPLC +
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCMH 51
>pdb|1Y4Z|B Chain B, The Crystal Structure Of Nitrate Reductase A, Narghi, In
Complex With The Q-Site Inhibitor Pentachlorophenol
Length = 512
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 16/91 (17%)
Query: 74 PHHRNLQELVRSRSRFSGIDKAVIESLPLFR------FASLRGSK--EGLECAVYLSKFE 125
P Q + R RS +G A IE P + F L K + ++ A+Y S+FE
Sbjct: 115 PEGSKSQPIARPRSLITGERMAKIEKGPNWEDDLGGEFDKLAKDKNFDNIQKAMY-SQFE 173
Query: 126 DTEILRLLPKCRHAFHMSCIDQWLEGHASCP 156
+T ++ L C H + +C+ A+CP
Sbjct: 174 NTFMMYLPRLCEHCLNPACV-------ATCP 197
>pdb|3EGW|B Chain B, The Crystal Structure Of The Narghi Mutant Narh - C16a
Length = 509
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 16/91 (17%)
Query: 74 PHHRNLQELVRSRSRFSGIDKAVIESLPLFR------FASLRGSK--EGLECAVYLSKFE 125
P Q + R RS +G A IE P + F L K + ++ A+Y S+FE
Sbjct: 115 PEGSKSQPIARPRSLITGERMAKIEKGPNWEDDLGGEFDKLAKDKNFDNIQKAMY-SQFE 173
Query: 126 DTEILRLLPKCRHAFHMSCIDQWLEGHASCP 156
+T ++ L C H + +C+ A+CP
Sbjct: 174 NTFMMYLPRLCEHCLNPACV-------ATCP 197
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 30.4 bits (67), Expect = 2.1, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 135 KCRHAFHMSCIDQWLEGHASCPLC 158
+C H+F +CI ++LE CP+C
Sbjct: 29 ECLHSFCKTCIVRYLETSKYCPIC 52
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 30.4 bits (67), Expect = 2.1, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 135 KCRHAFHMSCIDQWLEGHASCPLC 158
+C H+F +CI ++LE CP+C
Sbjct: 33 ECLHSFCKTCIVRYLETSKYCPIC 56
>pdb|1Q16|B Chain B, Crystal Structure Of Nitrate Reductase A, Narghi, From
Escherichia Coli
pdb|1R27|B Chain B, Crystal Structure Of Nargh Complex
pdb|1R27|D Chain D, Crystal Structure Of Nargh Complex
pdb|1SIW|B Chain B, Crystal Structure Of The Apomolybdo-Narghi
pdb|1Y5I|B Chain B, The Crystal Structure Of The Narghi Mutant Nari-K86a
pdb|1Y5L|B Chain B, The Crystal Structure Of The Narghi Mutant Nari-H66y
pdb|1Y5N|B Chain B, The Crystal Structure Of The Narghi Mutant Nari-K86a In
Complex With Pentachlorophenol
pdb|3IR5|B Chain B, Crystal Structure Of Narghi Mutant Narg-H49c
pdb|3IR6|B Chain B, Crystal Structure Of Narghi Mutant Narg-H49s
pdb|3IR7|B Chain B, Crystal Structure Of Narghi Mutant Narg-R94s
Length = 512
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 16/91 (17%)
Query: 74 PHHRNLQELVRSRSRFSGIDKAVIESLPLFR------FASLRGSK--EGLECAVYLSKFE 125
P Q + R RS +G A IE P + F L K + ++ A+Y S+FE
Sbjct: 115 PEGSKSQPIARPRSLITGERMAKIEKGPNWEDDLGGEFDKLAKDKNFDNIQKAMY-SQFE 173
Query: 126 DTEILRLLPKCRHAFHMSCIDQWLEGHASCP 156
+T ++ L C H + +C+ A+CP
Sbjct: 174 NTFMMYLPRLCEHCLNPACV-------ATCP 197
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 30.4 bits (67), Expect = 2.1, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 135 KCRHAFHMSCIDQWLEGHASCPLC 158
+C H+F +CI ++LE CP+C
Sbjct: 33 ECLHSFCKTCIVRYLETSKYCPIC 56
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 29.3 bits (64), Expect = 4.8, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 11/56 (19%)
Query: 110 GSKEGLE----CAVYLSKFEDTEILRLLPKCRHAFHMSCIDQW---LEGHASCPLC 158
G+ E L+ C+V L ++ I+ +C H F +CI +W LE CP+C
Sbjct: 7 GALENLQVEASCSVCLEYLKEPVII----ECGHNFCKACITRWWEDLERDFPCPVC 58
>pdb|1V87|A Chain A, Solution Structure Of The Ring-H2 Finger Domain Of Mouse
Deltex Protein 2
Length = 114
Score = 28.9 bits (63), Expect = 5.8, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Query: 133 LPKCRHAFHMSCI-----DQWLEGHASCPLCRYKFDGRDRGSFSYSNSLRFLRIPSN 184
L KC HAFH+ C+ + +G CP C+ + G G+ + F PS+
Sbjct: 58 LTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIY-GEKTGTQPWGKMEVFRSGPSS 113
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,324,431
Number of Sequences: 62578
Number of extensions: 367071
Number of successful extensions: 880
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 854
Number of HSP's gapped (non-prelim): 33
length of query: 422
length of database: 14,973,337
effective HSP length: 101
effective length of query: 321
effective length of database: 8,652,959
effective search space: 2777599839
effective search space used: 2777599839
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)