Query 038034
Match_columns 422
No_of_seqs 363 out of 1753
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 11:25:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038034.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038034hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.6 2.5E-16 8.6E-21 129.0 5.6 78 86-164 11-89 (91)
2 1x4j_A Ring finger protein 38; 99.6 1.8E-16 6E-21 124.7 2.8 69 96-165 5-73 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.5 3E-14 1E-18 105.0 4.5 52 112-163 3-54 (55)
4 2ect_A Ring finger protein 126 99.4 9.6E-14 3.3E-18 109.5 6.7 57 111-168 12-68 (78)
5 2ep4_A Ring finger protein 24; 99.4 9.2E-14 3.1E-18 108.5 4.3 54 111-165 12-65 (74)
6 2kiz_A E3 ubiquitin-protein li 99.4 1.5E-13 5.1E-18 105.9 3.8 54 111-165 11-64 (69)
7 2ecm_A Ring finger and CHY zin 99.3 8.4E-13 2.9E-17 97.0 4.1 51 112-163 3-54 (55)
8 1v87_A Deltex protein 2; ring- 99.3 1.5E-12 5E-17 109.8 5.2 52 113-165 24-95 (114)
9 2ecl_A Ring-box protein 2; RNF 99.3 3.5E-13 1.2E-17 108.1 1.3 52 113-164 14-76 (81)
10 3ng2_A RNF4, snurf, ring finge 99.3 1E-12 3.5E-17 101.3 3.1 56 111-167 7-66 (71)
11 2ea6_A Ring finger protein 4; 99.3 1.2E-12 4.2E-17 100.0 2.8 53 111-164 12-68 (69)
12 2xeu_A Ring finger protein 4; 99.2 1.6E-12 5.6E-17 97.8 2.1 53 113-166 2-58 (64)
13 3dpl_R Ring-box protein 1; ubi 99.2 2.4E-12 8.1E-17 109.1 2.6 50 113-163 36-100 (106)
14 2ecn_A Ring finger protein 141 99.2 3.1E-12 1.1E-16 98.7 2.3 53 110-167 11-63 (70)
15 2d8s_A Cellular modulator of i 99.2 1E-11 3.5E-16 100.1 4.6 54 111-166 12-72 (80)
16 2ct2_A Tripartite motif protei 99.2 1.3E-11 4.6E-16 98.6 5.0 56 111-167 12-71 (88)
17 2djb_A Polycomb group ring fin 99.2 1.1E-11 3.9E-16 96.4 4.0 55 110-167 11-65 (72)
18 1chc_A Equine herpes virus-1 r 99.2 1.4E-11 4.7E-16 94.4 4.1 50 112-164 3-52 (68)
19 2d8t_A Dactylidin, ring finger 99.1 1.2E-11 4E-16 96.1 2.9 51 111-165 12-62 (71)
20 4a0k_B E3 ubiquitin-protein li 99.1 4.4E-12 1.5E-16 109.5 0.2 51 113-164 47-112 (117)
21 2yur_A Retinoblastoma-binding 99.1 4E-11 1.4E-15 94.0 5.1 55 110-167 11-67 (74)
22 2ysl_A Tripartite motif-contai 99.1 4.3E-11 1.5E-15 92.7 4.4 52 111-166 17-71 (73)
23 4ayc_A E3 ubiquitin-protein li 99.1 2.3E-11 7.8E-16 106.5 1.7 48 113-164 52-99 (138)
24 2csy_A Zinc finger protein 183 99.1 4.7E-11 1.6E-15 94.8 3.0 49 111-163 12-60 (81)
25 2ecy_A TNF receptor-associated 99.1 5E-11 1.7E-15 91.1 2.9 52 111-166 12-64 (66)
26 2ct0_A Non-SMC element 1 homol 99.0 1.3E-10 4.4E-15 92.7 4.4 52 112-166 13-66 (74)
27 2egp_A Tripartite motif-contai 99.0 6.1E-11 2.1E-15 93.1 1.8 52 110-165 8-66 (79)
28 2ecv_A Tripartite motif-contai 99.0 1.7E-10 5.7E-15 91.2 4.3 52 111-166 16-73 (85)
29 4ap4_A E3 ubiquitin ligase RNF 99.0 7.7E-11 2.6E-15 100.3 2.5 55 112-167 5-63 (133)
30 1t1h_A Gspef-atpub14, armadill 99.0 1.3E-10 4.6E-15 91.3 3.5 51 111-165 5-56 (78)
31 3lrq_A E3 ubiquitin-protein li 99.0 6.2E-11 2.1E-15 98.4 0.8 50 112-165 20-71 (100)
32 2ecw_A Tripartite motif-contai 99.0 1.4E-10 4.9E-15 91.5 2.9 51 111-165 16-72 (85)
33 1g25_A CDK-activating kinase a 99.0 2.1E-10 7.3E-15 87.3 2.6 54 113-167 2-58 (65)
34 2y43_A E3 ubiquitin-protein li 98.9 1.5E-10 5.1E-15 95.3 1.4 49 113-164 21-69 (99)
35 2ysj_A Tripartite motif-contai 98.9 3.4E-10 1.2E-14 85.6 3.1 45 110-158 16-63 (63)
36 4ap4_A E3 ubiquitin ligase RNF 98.9 2.1E-10 7.2E-15 97.6 2.0 55 111-166 69-127 (133)
37 2ckl_A Polycomb group ring fin 98.9 3.2E-10 1.1E-14 94.9 2.3 52 111-165 12-63 (108)
38 3fl2_A E3 ubiquitin-protein li 98.9 3.9E-10 1.3E-14 96.6 2.7 49 112-164 50-99 (124)
39 3ztg_A E3 ubiquitin-protein li 98.9 5E-10 1.7E-14 90.7 3.2 50 111-163 10-61 (92)
40 2ecj_A Tripartite motif-contai 98.9 4.6E-10 1.6E-14 82.9 2.3 44 111-158 12-58 (58)
41 2ckl_B Ubiquitin ligase protei 98.9 3.1E-10 1.1E-14 101.8 1.1 49 113-164 53-102 (165)
42 1jm7_A BRCA1, breast cancer ty 98.9 7.6E-10 2.6E-14 92.4 2.6 50 113-166 20-72 (112)
43 1bor_A Transcription factor PM 98.8 1.8E-09 6.3E-14 80.4 3.7 48 112-166 4-51 (56)
44 3l11_A E3 ubiquitin-protein li 98.8 4.8E-10 1.6E-14 94.7 0.3 50 111-164 12-62 (115)
45 3hct_A TNF receptor-associated 98.8 8.1E-10 2.8E-14 94.0 1.7 52 110-165 14-66 (118)
46 1z6u_A NP95-like ring finger p 98.8 1.2E-09 4E-14 97.5 1.9 49 113-165 77-126 (150)
47 1e4u_A Transcriptional repress 98.8 4.4E-09 1.5E-13 84.2 4.1 56 111-167 8-65 (78)
48 2kre_A Ubiquitin conjugation f 98.8 3.7E-09 1.3E-13 88.3 3.6 51 111-165 26-76 (100)
49 1rmd_A RAG1; V(D)J recombinati 98.7 1.5E-09 5.2E-14 91.7 0.9 50 113-166 22-72 (116)
50 1jm7_B BARD1, BRCA1-associated 98.7 4.5E-09 1.5E-13 89.3 3.5 47 112-164 20-67 (117)
51 2kr4_A Ubiquitin conjugation f 98.7 3.7E-09 1.3E-13 85.5 2.6 51 111-165 11-61 (85)
52 1wgm_A Ubiquitin conjugation f 98.7 6.3E-09 2.2E-13 86.6 3.9 51 111-165 19-70 (98)
53 2y1n_A E3 ubiquitin-protein li 98.6 5.3E-09 1.8E-13 106.6 1.9 49 113-165 331-380 (389)
54 2vje_A E3 ubiquitin-protein li 98.6 5.9E-09 2E-13 80.0 1.4 50 112-163 6-56 (64)
55 3k1l_B Fancl; UBC, ring, RWD, 98.6 6.7E-09 2.3E-13 104.2 1.7 53 112-164 306-373 (381)
56 3knv_A TNF receptor-associated 98.6 7.6E-09 2.6E-13 91.4 1.4 51 111-165 28-79 (141)
57 2c2l_A CHIP, carboxy terminus 98.6 2.1E-08 7E-13 95.3 3.6 49 112-164 206-255 (281)
58 2vje_B MDM4 protein; proto-onc 98.5 1.7E-08 5.7E-13 77.2 1.3 50 112-163 5-55 (63)
59 4ic3_A E3 ubiquitin-protein li 98.5 1.4E-08 4.9E-13 79.7 0.3 44 113-164 23-67 (74)
60 3hcs_A TNF receptor-associated 98.5 3.6E-08 1.2E-12 88.6 1.7 53 109-165 13-66 (170)
61 2yu4_A E3 SUMO-protein ligase 98.5 2.7E-08 9.4E-13 81.7 0.7 48 111-161 4-59 (94)
62 1wim_A KIAA0161 protein; ring 98.4 8.4E-08 2.9E-12 78.3 2.1 49 112-161 3-61 (94)
63 1vyx_A ORF K3, K3RING; zinc-bi 98.4 9.9E-08 3.4E-12 72.7 1.9 48 112-163 4-58 (60)
64 2f42_A STIP1 homology and U-bo 98.3 1.6E-07 5.5E-12 86.5 2.4 51 111-165 103-154 (179)
65 2ecg_A Baculoviral IAP repeat- 98.2 2.7E-07 9.1E-12 72.4 1.9 44 113-164 24-68 (75)
66 2ea5_A Cell growth regulator w 98.2 5E-07 1.7E-11 70.1 3.3 45 112-164 13-58 (68)
67 2yho_A E3 ubiquitin-protein li 98.2 2E-07 6.9E-12 74.4 0.1 45 113-165 17-62 (79)
68 3t6p_A Baculoviral IAP repeat- 98.2 7.2E-07 2.5E-11 89.7 3.4 44 113-164 294-338 (345)
69 2bay_A PRE-mRNA splicing facto 98.0 7.5E-07 2.6E-11 67.9 0.4 50 115-167 4-53 (61)
70 3htk_C E3 SUMO-protein ligase 98.0 1.2E-06 4E-11 85.1 1.7 51 112-165 179-233 (267)
71 3nw0_A Non-structural maintena 97.8 1E-05 3.5E-10 77.4 3.7 53 113-168 179-233 (238)
72 3vk6_A E3 ubiquitin-protein li 97.6 1.7E-05 6E-10 66.3 1.9 46 116-164 3-49 (101)
73 2lri_C Autoimmune regulator; Z 93.5 0.058 2E-06 41.5 3.7 46 112-161 10-59 (66)
74 2jun_A Midline-1; B-BOX, TRIM, 91.5 0.059 2E-06 43.7 1.4 36 113-149 2-38 (101)
75 1we9_A PHD finger family prote 91.4 0.12 4.1E-06 38.9 3.0 49 112-160 4-57 (64)
76 2ko5_A Ring finger protein Z; 90.9 0.19 6.4E-06 41.6 3.8 52 111-167 25-76 (99)
77 3u5n_A E3 ubiquitin-protein li 89.8 0.2 6.8E-06 46.2 3.5 46 112-161 5-54 (207)
78 3o36_A Transcription intermedi 89.7 0.2 7E-06 45.2 3.4 46 113-162 3-52 (184)
79 1mm2_A MI2-beta; PHD, zinc fin 89.2 0.37 1.3E-05 36.1 4.0 47 111-161 6-56 (61)
80 3lqh_A Histone-lysine N-methyl 88.2 0.28 9.7E-06 44.9 3.2 48 114-161 2-63 (183)
81 2l5u_A Chromodomain-helicase-D 87.4 0.37 1.3E-05 36.2 2.9 46 112-161 9-58 (61)
82 2yql_A PHD finger protein 21A; 87.2 0.36 1.2E-05 35.5 2.7 46 111-160 6-55 (56)
83 1xwh_A Autoimmune regulator; P 85.7 0.39 1.3E-05 36.5 2.3 46 112-161 6-55 (66)
84 2yt5_A Metal-response element- 85.2 0.6 2.1E-05 35.1 3.1 50 112-161 4-61 (66)
85 2k16_A Transcription initiatio 83.1 0.47 1.6E-05 36.7 1.7 52 112-164 16-71 (75)
86 1wil_A KIAA1045 protein; ring 83.0 0.56 1.9E-05 38.0 2.2 36 111-148 12-47 (89)
87 2puy_A PHD finger protein 21A; 82.9 0.36 1.2E-05 35.9 1.0 47 113-163 4-54 (60)
88 1wev_A Riken cDNA 1110020M19; 82.3 0.87 3E-05 36.6 3.1 51 114-164 16-75 (88)
89 3v43_A Histone acetyltransfera 81.9 0.77 2.6E-05 38.3 2.8 45 116-160 63-111 (112)
90 1fp0_A KAP-1 corepressor; PHD 81.5 1.9 6.4E-05 35.1 4.8 47 111-161 22-72 (88)
91 2xb1_A Pygopus homolog 2, B-ce 80.8 0.38 1.3E-05 40.1 0.5 47 115-161 4-61 (105)
92 2e6r_A Jumonji/ARID domain-con 80.7 0.87 3E-05 37.0 2.6 50 112-162 14-67 (92)
93 1f62_A Transcription factor WS 80.4 0.73 2.5E-05 32.9 1.8 44 116-160 2-49 (51)
94 2kgg_A Histone demethylase jar 80.1 1.4 4.9E-05 31.8 3.3 44 116-159 4-52 (52)
95 2ro1_A Transcription intermedi 79.7 1 3.4E-05 41.1 3.0 44 114-161 2-49 (189)
96 2ysm_A Myeloid/lymphoid or mix 78.9 1.7 5.8E-05 35.9 3.9 47 112-159 5-55 (111)
97 2lv9_A Histone-lysine N-methyl 78.8 1.6 5.4E-05 35.8 3.6 44 114-159 28-74 (98)
98 1wee_A PHD finger family prote 76.7 1.4 4.7E-05 33.9 2.5 49 113-162 15-67 (72)
99 1wep_A PHF8; structural genomi 75.3 1.9 6.4E-05 33.7 3.0 49 113-162 11-64 (79)
100 2ri7_A Nucleosome-remodeling f 75.1 0.66 2.3E-05 41.2 0.3 49 112-161 6-59 (174)
101 2l43_A N-teminal domain from h 74.2 0.91 3.1E-05 36.6 0.9 53 112-164 23-78 (88)
102 3shb_A E3 ubiquitin-protein li 73.1 2.2 7.4E-05 33.6 2.8 44 116-160 28-76 (77)
103 2ku3_A Bromodomain-containing 72.6 1.1 3.9E-05 34.7 1.1 51 111-161 13-66 (71)
104 3o70_A PHD finger protein 13; 71.6 2.6 8.7E-05 32.3 2.8 47 112-160 17-66 (68)
105 1weu_A Inhibitor of growth fam 71.4 4.5 0.00015 32.9 4.4 45 113-162 35-86 (91)
106 2e6s_A E3 ubiquitin-protein li 69.3 3.1 0.00011 32.7 3.0 44 116-160 28-76 (77)
107 2knc_B Integrin beta-3; transm 67.2 5.5 0.00019 31.5 4.0 28 37-64 10-37 (79)
108 1wen_A Inhibitor of growth fam 66.3 6.3 0.00022 30.3 4.1 44 113-161 15-65 (71)
109 3m62_A Ubiquitin conjugation f 65.1 2.4 8.4E-05 47.7 2.1 51 111-165 888-939 (968)
110 3ask_A E3 ubiquitin-protein li 65.1 3.1 0.00011 39.3 2.6 44 116-160 176-224 (226)
111 2kwj_A Zinc finger protein DPF 65.0 4.4 0.00015 33.8 3.2 45 115-159 2-59 (114)
112 2vpb_A Hpygo1, pygopus homolog 63.2 2.8 9.5E-05 31.9 1.5 48 112-159 6-64 (65)
113 2rsd_A E3 SUMO-protein ligase 61.9 3.6 0.00012 31.2 2.0 46 114-160 10-64 (68)
114 3asl_A E3 ubiquitin-protein li 61.6 5 0.00017 30.8 2.7 44 116-160 20-68 (70)
115 1wem_A Death associated transc 61.2 3.2 0.00011 32.0 1.6 47 114-162 16-71 (76)
116 4gne_A Histone-lysine N-methyl 60.8 7 0.00024 32.6 3.7 48 111-164 12-65 (107)
117 2lbm_A Transcriptional regulat 60.8 5.6 0.00019 34.9 3.2 46 111-160 60-116 (142)
118 2klu_A T-cell surface glycopro 59.6 16 0.00054 28.2 5.1 9 136-144 59-67 (70)
119 2kwj_A Zinc finger protein DPF 57.7 2.9 0.0001 34.9 0.9 46 116-162 60-109 (114)
120 2knc_A Integrin alpha-IIB; tra 57.3 24 0.00083 26.0 5.6 25 36-60 11-35 (54)
121 2k9j_B Integrin beta-3; transm 57.3 15 0.0005 25.8 4.3 28 37-64 9-36 (43)
122 3c6w_A P28ING5, inhibitor of g 56.9 5.2 0.00018 29.7 2.0 43 113-160 8-57 (59)
123 2ysm_A Myeloid/lymphoid or mix 56.3 5.2 0.00018 32.9 2.2 45 116-161 56-104 (111)
124 3v43_A Histone acetyltransfera 55.9 7.5 0.00026 32.2 3.1 47 113-159 4-62 (112)
125 1wew_A DNA-binding family prot 55.3 4.4 0.00015 31.6 1.4 48 113-162 15-73 (78)
126 2vnf_A ING 4, P29ING4, inhibit 53.8 6 0.0002 29.4 1.9 43 113-160 9-58 (60)
127 2l8s_A Integrin alpha-1; trans 51.8 31 0.0011 25.5 5.4 25 36-60 8-32 (54)
128 2l2t_A Receptor tyrosine-prote 51.5 23 0.00078 25.1 4.5 7 40-46 12-18 (44)
129 1y02_A CARP2, FYVE-ring finger 51.2 3.9 0.00013 34.9 0.6 48 113-160 18-65 (120)
130 2jwa_A Receptor tyrosine-prote 50.8 22 0.00074 25.3 4.3 7 37-43 14-20 (44)
131 1x61_A Thyroid receptor intera 50.7 17 0.00059 26.7 4.1 41 113-163 4-44 (72)
132 3ql9_A Transcriptional regulat 49.9 11 0.00036 32.6 3.1 46 111-160 54-110 (129)
133 1wyh_A SLIM 2, skeletal muscle 49.9 17 0.0006 26.6 4.0 41 114-164 5-45 (72)
134 1wfk_A Zinc finger, FYVE domai 49.8 14 0.00047 29.5 3.6 54 111-164 6-66 (88)
135 1dvp_A HRS, hepatocyte growth 48.8 9.5 0.00032 35.1 2.8 37 113-149 160-196 (220)
136 1x4k_A Skeletal muscle LIM-pro 48.6 19 0.00066 26.4 4.1 41 114-164 5-45 (72)
137 1x4l_A Skeletal muscle LIM-pro 47.7 22 0.00074 26.2 4.3 42 113-164 4-47 (72)
138 3kqi_A GRC5, PHD finger protei 47.7 6.6 0.00023 30.2 1.3 48 115-162 10-62 (75)
139 1iml_A CRIP, cysteine rich int 46.7 16 0.00056 27.3 3.5 38 116-164 2-39 (76)
140 3zyq_A Hepatocyte growth facto 45.8 11 0.00039 34.9 2.9 37 113-149 163-199 (226)
141 2ks1_B Epidermal growth factor 45.7 18 0.0006 25.6 3.2 28 39-66 12-39 (44)
142 2yw8_A RUN and FYVE domain-con 45.5 15 0.00051 28.7 3.1 38 112-149 17-54 (82)
143 1g47_A Pinch protein; LIM doma 45.2 19 0.00064 26.8 3.6 43 113-165 10-52 (77)
144 2cu8_A Cysteine-rich protein 2 44.5 22 0.00076 26.5 3.9 41 113-164 8-48 (76)
145 2l2t_A Receptor tyrosine-prote 44.5 54 0.0019 23.1 5.5 28 33-60 8-35 (44)
146 1joc_A EEA1, early endosomal a 44.2 11 0.00039 31.9 2.4 36 113-148 68-103 (125)
147 3t7l_A Zinc finger FYVE domain 44.1 9.5 0.00032 30.5 1.8 50 113-162 19-74 (90)
148 2k9y_A Ephrin type-A receptor 43.3 19 0.00066 24.3 3.1 13 40-52 15-27 (41)
149 2ct7_A Ring finger protein 31; 43.1 6.8 0.00023 30.9 0.8 30 131-160 44-75 (86)
150 1zbd_B Rabphilin-3A; G protein 43.0 16 0.00054 31.6 3.2 49 112-160 53-106 (134)
151 1x63_A Skeletal muscle LIM-pro 42.7 27 0.00093 26.3 4.2 41 114-164 15-55 (82)
152 1z2q_A LM5-1; membrane protein 42.4 17 0.00058 28.6 3.0 38 112-149 19-56 (84)
153 2g6q_A Inhibitor of growth pro 42.0 12 0.00042 27.9 2.0 45 113-160 10-59 (62)
154 1vfy_A Phosphatidylinositol-3- 41.6 16 0.00053 28.0 2.6 34 115-148 12-45 (73)
155 2jmi_A Protein YNG1, ING1 homo 41.5 15 0.00051 29.7 2.6 46 112-160 24-75 (90)
156 2jmo_A Parkin; IBR, E3 ligase, 41.0 6.2 0.00021 30.9 0.2 14 135-148 55-68 (80)
157 2k1a_A Integrin alpha-IIB; sin 40.4 33 0.0011 24.0 3.9 26 36-61 9-34 (42)
158 3o7a_A PHD finger protein 13 v 39.9 14 0.00047 26.4 1.9 41 119-160 8-51 (52)
159 1x4u_A Zinc finger, FYVE domai 39.7 20 0.00068 28.1 3.0 37 112-148 12-48 (84)
160 2co8_A NEDD9 interacting prote 39.2 29 0.00098 26.6 3.8 43 112-165 13-55 (82)
161 3mjh_B Early endosome antigen 38.8 5.2 0.00018 26.9 -0.5 19 112-130 3-21 (34)
162 3kv5_D JMJC domain-containing 38.5 7.6 0.00026 40.5 0.5 48 114-162 37-89 (488)
163 3f6q_B LIM and senescent cell 37.2 23 0.00079 25.7 2.9 43 113-165 10-52 (72)
164 2zet_C Melanophilin; complex, 36.7 9.7 0.00033 33.7 0.8 47 113-160 67-116 (153)
165 2dj7_A Actin-binding LIM prote 36.4 29 0.001 26.4 3.5 40 113-163 14-53 (80)
166 1z60_A TFIIH basal transcripti 35.9 8.6 0.0003 28.9 0.3 42 115-158 16-58 (59)
167 3mpx_A FYVE, rhogef and PH dom 35.8 7.7 0.00026 38.7 0.0 37 113-149 374-410 (434)
168 2jwa_A Receptor tyrosine-prote 35.0 51 0.0018 23.3 4.2 31 35-66 9-39 (44)
169 1zza_A Stannin, AG8_1; helix, 33.8 1.1E+02 0.0038 24.0 6.3 16 52-67 26-41 (90)
170 1a7i_A QCRP2 (LIM1); LIM domai 33.7 23 0.00078 26.8 2.4 41 114-165 7-47 (81)
171 1x68_A FHL5 protein; four-and- 33.4 38 0.0013 25.2 3.6 40 114-163 5-46 (76)
172 2cs3_A Protein C14ORF4, MY039 33.1 28 0.00095 28.0 2.8 40 112-151 13-52 (93)
173 2d8z_A Four and A half LIM dom 33.0 47 0.0016 24.1 4.0 39 114-164 5-43 (70)
174 2d8y_A Eplin protein; LIM doma 32.2 41 0.0014 26.0 3.8 42 113-165 14-55 (91)
175 2d8x_A Protein pinch; LIM doma 31.8 46 0.0016 24.2 3.8 41 113-165 4-44 (70)
176 2l3k_A Rhombotin-2, linker, LI 31.6 23 0.00078 29.3 2.3 37 116-162 10-46 (123)
177 1weo_A Cellulose synthase, cat 30.5 29 0.00099 28.3 2.5 51 113-163 15-69 (93)
178 2cup_A Skeletal muscle LIM-pro 29.8 61 0.0021 25.2 4.5 40 114-163 5-44 (101)
179 1nyp_A Pinch protein; LIM doma 28.5 55 0.0019 23.5 3.7 39 114-164 5-43 (66)
180 2egq_A FHL1 protein; LIM domai 27.4 47 0.0016 24.6 3.2 41 114-164 15-58 (77)
181 1x62_A C-terminal LIM domain p 27.1 49 0.0017 24.8 3.3 39 113-163 14-52 (79)
182 1x64_A Alpha-actinin-2 associa 26.9 68 0.0023 24.6 4.2 41 113-165 24-64 (89)
183 3i2d_A E3 SUMO-protein ligase 26.6 19 0.00065 36.3 1.1 47 115-167 250-303 (371)
184 2ehe_A Four and A half LIM dom 26.5 48 0.0016 24.9 3.2 41 114-164 15-55 (82)
185 2gmg_A Hypothetical protein PF 26.2 28 0.00097 29.0 1.9 24 135-163 72-95 (105)
186 2l4z_A DNA endonuclease RBBP8, 26.0 42 0.0014 28.0 2.9 39 114-163 61-99 (123)
187 3kv4_A PHD finger protein 8; e 25.4 15 0.00053 37.8 0.1 49 116-164 6-59 (447)
188 4fo9_A E3 SUMO-protein ligase 24.9 22 0.00075 35.7 1.1 47 115-167 216-269 (360)
189 2fiy_A Protein FDHE homolog; F 24.8 23 0.00079 34.7 1.3 49 112-161 180-231 (309)
190 1v6g_A Actin binding LIM prote 24.6 64 0.0022 24.1 3.6 38 115-164 16-53 (81)
191 4bbq_A Lysine-specific demethy 23.8 22 0.00077 29.1 0.8 45 116-160 61-113 (117)
192 2a20_A Regulating synaptic mem 23.8 31 0.001 26.1 1.4 49 111-160 6-59 (62)
193 1wig_A KIAA1808 protein; LIM d 23.6 77 0.0026 23.5 3.8 38 114-163 5-42 (73)
194 2cor_A Pinch protein; LIM doma 23.4 69 0.0024 24.1 3.5 41 113-165 14-54 (79)
195 2dar_A PDZ and LIM domain prot 22.9 81 0.0028 24.2 3.9 40 113-164 24-63 (90)
196 2d8v_A Zinc finger FYVE domain 22.8 56 0.0019 25.1 2.8 32 111-147 5-37 (67)
197 1wd2_A Ariadne-1 protein homol 22.4 37 0.0013 25.1 1.7 37 115-151 7-47 (60)
198 2iyb_E Testin, TESS, TES; LIM 22.3 65 0.0022 23.2 3.1 40 115-164 3-44 (65)
199 2cur_A Skeletal muscle LIM-pro 21.8 67 0.0023 23.2 3.1 39 114-164 5-43 (69)
200 2jny_A Uncharacterized BCR; st 21.8 32 0.0011 26.3 1.3 20 145-164 3-22 (67)
201 2pk7_A Uncharacterized protein 20.7 33 0.0011 26.3 1.1 20 145-164 1-20 (69)
202 1x6a_A LIMK-2, LIM domain kina 20.1 77 0.0026 23.6 3.2 39 114-164 15-53 (81)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.62 E-value=2.5e-16 Score=128.96 Aligned_cols=78 Identities=27% Similarity=0.625 Sum_probs=68.5
Q ss_pred cccCCCCCHHHHhhCCceEeeccCC-CCCCccccccccccccccceeecCCCCceeeCCchhhhhccCCCCCcccccccC
Q 038034 86 RSRFSGIDKAVIESLPLFRFASLRG-SKEGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGHASCPLCRYKFDG 164 (422)
Q Consensus 86 ~~~~~gl~~~~i~~LP~~~~~~~~~-~~e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~l~~ 164 (422)
.....+++++.|+.||.+.+..... ..++..|+||++.|..++.++.+| |+|.||..||..|+..+.+||+||+.+.+
T Consensus 11 ~~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 11 MVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CcCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 4457799999999999999876443 346678999999999999899999 99999999999999999999999998865
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.8e-16 Score=124.72 Aligned_cols=69 Identities=36% Similarity=0.859 Sum_probs=61.6
Q ss_pred HHhhCCceEeeccCCCCCCccccccccccccccceeecCCCCceeeCCchhhhhccCCCCCcccccccCC
Q 038034 96 VIESLPLFRFASLRGSKEGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGHASCPLCRYKFDGR 165 (422)
Q Consensus 96 ~i~~LP~~~~~~~~~~~e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~l~~~ 165 (422)
.++.||.+++.......++..|+||++.|..++.++.+| |+|.||..||.+|+..+.+||+||+++.+.
T Consensus 5 ~i~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 5 SSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CCSSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred hHhhCCcEEecCccccCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 456799999987776777889999999999998889999 999999999999999999999999987653
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.46 E-value=3e-14 Score=105.02 Aligned_cols=52 Identities=50% Similarity=1.146 Sum_probs=47.1
Q ss_pred CCCccccccccccccccceeecCCCCceeeCCchhhhhccCCCCCccccccc
Q 038034 112 KEGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGHASCPLCRYKFD 163 (422)
Q Consensus 112 ~e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~l~ 163 (422)
+++.+|+||++.|..++.+..++.|+|.||..||.+|++.+.+||+||+++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 4567999999999998888888779999999999999999999999998764
No 4
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.45 E-value=9.6e-14 Score=109.48 Aligned_cols=57 Identities=46% Similarity=0.944 Sum_probs=50.7
Q ss_pred CCCCccccccccccccccceeecCCCCceeeCCchhhhhccCCCCCcccccccCCCCC
Q 038034 111 SKEGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGHASCPLCRYKFDGRDRG 168 (422)
Q Consensus 111 ~~e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~l~~~~~~ 168 (422)
..+..+|+||++.|..++.+..++ |+|.||..||.+|+..+.+||+||+.+...+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 68 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTA 68 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSC
T ss_pred CCCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCcccC
Confidence 445679999999999988888898 999999999999999999999999998876543
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=9.2e-14 Score=108.51 Aligned_cols=54 Identities=37% Similarity=0.743 Sum_probs=48.7
Q ss_pred CCCCccccccccccccccceeecCCCCceeeCCchhhhhccCCCCCcccccccCC
Q 038034 111 SKEGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGHASCPLCRYKFDGR 165 (422)
Q Consensus 111 ~~e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~l~~~ 165 (422)
..++..|+||++.|..+..+..++ |+|.||..||.+|++.+.+||+||+++...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQL 65 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred CCCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence 455679999999999988888898 999999999999999999999999988753
No 6
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.39 E-value=1.5e-13 Score=105.92 Aligned_cols=54 Identities=39% Similarity=0.901 Sum_probs=48.4
Q ss_pred CCCCccccccccccccccceeecCCCCceeeCCchhhhhccCCCCCcccccccCC
Q 038034 111 SKEGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGHASCPLCRYKFDGR 165 (422)
Q Consensus 111 ~~e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~l~~~ 165 (422)
..+...|+||++.|..++.+..+| |+|.||..||..|+..+.+||+||..+...
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 345678999999999888888998 999999999999999999999999988753
No 7
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.32 E-value=8.4e-13 Score=97.01 Aligned_cols=51 Identities=25% Similarity=0.642 Sum_probs=43.9
Q ss_pred CCCccccccccccccc-cceeecCCCCceeeCCchhhhhccCCCCCccccccc
Q 038034 112 KEGLECAVYLSKFEDT-EILRLLPKCRHAFHMSCIDQWLEGHASCPLCRYKFD 163 (422)
Q Consensus 112 ~e~~~CsICLe~f~~~-~~~r~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~l~ 163 (422)
.+...|+||++.|.++ +.+..++ |+|.||..||.+|+..+.+||+||+++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 4567899999999664 3566777 9999999999999999999999998764
No 8
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.30 E-value=1.5e-12 Score=109.79 Aligned_cols=52 Identities=27% Similarity=0.695 Sum_probs=42.3
Q ss_pred CCcccccccccccccc---------------ceeecCCCCceeeCCchhhhh-----ccCCCCCcccccccCC
Q 038034 113 EGLECAVYLSKFEDTE---------------ILRLLPKCRHAFHMSCIDQWL-----EGHASCPLCRYKFDGR 165 (422)
Q Consensus 113 e~~~CsICLe~f~~~~---------------~~r~Lp~C~H~FH~~CI~~WL-----~~~~sCPlCR~~l~~~ 165 (422)
.+.+|+||++.|..+. .+.+++ |+|.||..||..|+ ..+.+||+||..+...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 4569999999997653 334677 99999999999999 4577999999987654
No 9
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=3.5e-13 Score=108.10 Aligned_cols=52 Identities=27% Similarity=0.699 Sum_probs=42.8
Q ss_pred CCcccccccccccc-----------ccceeecCCCCceeeCCchhhhhccCCCCCcccccccC
Q 038034 113 EGLECAVYLSKFED-----------TEILRLLPKCRHAFHMSCIDQWLEGHASCPLCRYKFDG 164 (422)
Q Consensus 113 e~~~CsICLe~f~~-----------~~~~r~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~l~~ 164 (422)
++..|+||++.|.+ ++.++.++.|+|.||..||++||..+.+||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 45678888888854 45566666699999999999999999999999998764
No 10
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.28 E-value=1e-12 Score=101.27 Aligned_cols=56 Identities=20% Similarity=0.601 Sum_probs=47.2
Q ss_pred CCCCccccccccccccc----cceeecCCCCceeeCCchhhhhccCCCCCcccccccCCCC
Q 038034 111 SKEGLECAVYLSKFEDT----EILRLLPKCRHAFHMSCIDQWLEGHASCPLCRYKFDGRDR 167 (422)
Q Consensus 111 ~~e~~~CsICLe~f~~~----~~~r~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~l~~~~~ 167 (422)
..++..|+||++.|.+. ..+..++ |||.||..||.+|+..+.+||+||.++...+.
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 66 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChhhe
Confidence 34567999999999774 4456777 99999999999999999999999999876544
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=1.2e-12 Score=99.96 Aligned_cols=53 Identities=21% Similarity=0.631 Sum_probs=44.9
Q ss_pred CCCCccccccccccccc----cceeecCCCCceeeCCchhhhhccCCCCCcccccccC
Q 038034 111 SKEGLECAVYLSKFEDT----EILRLLPKCRHAFHMSCIDQWLEGHASCPLCRYKFDG 164 (422)
Q Consensus 111 ~~e~~~CsICLe~f~~~----~~~r~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~l~~ 164 (422)
..+...|+||++.|.+. ..+..++ |+|.||..||..|+..+.+||+||.++..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 45677999999999875 3346677 99999999999999999999999998753
No 12
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.24 E-value=1.6e-12 Score=97.84 Aligned_cols=53 Identities=21% Similarity=0.633 Sum_probs=45.1
Q ss_pred CCccccccccccccc----cceeecCCCCceeeCCchhhhhccCCCCCcccccccCCC
Q 038034 113 EGLECAVYLSKFEDT----EILRLLPKCRHAFHMSCIDQWLEGHASCPLCRYKFDGRD 166 (422)
Q Consensus 113 e~~~CsICLe~f~~~----~~~r~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~l~~~~ 166 (422)
++.+|+||++.|.+. ..+..++ |||.||..||.+|+..+.+||+||.++...+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence 456899999999864 3456677 9999999999999999999999999887644
No 13
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.23 E-value=2.4e-12 Score=109.13 Aligned_cols=50 Identities=30% Similarity=0.642 Sum_probs=42.7
Q ss_pred CCcccccccccccccc---------------ceeecCCCCceeeCCchhhhhccCCCCCccccccc
Q 038034 113 EGLECAVYLSKFEDTE---------------ILRLLPKCRHAFHMSCIDQWLEGHASCPLCRYKFD 163 (422)
Q Consensus 113 e~~~CsICLe~f~~~~---------------~~r~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~l~ 163 (422)
++..|+||++.|...- .+..++ |+|.||..||++||..+.+||+||+++.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 5678999999998541 255676 9999999999999999999999999864
No 14
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=3.1e-12 Score=98.72 Aligned_cols=53 Identities=34% Similarity=0.909 Sum_probs=45.5
Q ss_pred CCCCCccccccccccccccceeecCCCCceeeCCchhhhhccCCCCCcccccccCCCC
Q 038034 110 GSKEGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGHASCPLCRYKFDGRDR 167 (422)
Q Consensus 110 ~~~e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~l~~~~~ 167 (422)
...+...|+||++.+.+ ..+| |+|.||..||..|+..+..||+||.++...+.
T Consensus 11 ~~~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 63 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGANE 63 (70)
T ss_dssp CCCCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCCCC
T ss_pred cCCCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCCCc
Confidence 34567799999999877 5677 99999999999999999999999998876543
No 15
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1e-11 Score=100.14 Aligned_cols=54 Identities=28% Similarity=0.709 Sum_probs=45.1
Q ss_pred CCCCccccccccccccccceeecCCCC-----ceeeCCchhhhhccC--CCCCcccccccCCC
Q 038034 111 SKEGLECAVYLSKFEDTEILRLLPKCR-----HAFHMSCIDQWLEGH--ASCPLCRYKFDGRD 166 (422)
Q Consensus 111 ~~e~~~CsICLe~f~~~~~~r~Lp~C~-----H~FH~~CI~~WL~~~--~sCPlCR~~l~~~~ 166 (422)
..++..|.||+++|.+++.+ ++| |+ |.||..||++||..+ .+||+||+.+....
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 34567899999999887766 588 96 999999999999865 58999999887643
No 16
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1.3e-11 Score=98.62 Aligned_cols=56 Identities=25% Similarity=0.618 Sum_probs=47.3
Q ss_pred CCCCccccccccccccccc-eeecCCCCceeeCCchhhhhccC---CCCCcccccccCCCC
Q 038034 111 SKEGLECAVYLSKFEDTEI-LRLLPKCRHAFHMSCIDQWLEGH---ASCPLCRYKFDGRDR 167 (422)
Q Consensus 111 ~~e~~~CsICLe~f~~~~~-~r~Lp~C~H~FH~~CI~~WL~~~---~sCPlCR~~l~~~~~ 167 (422)
..+...|+||++.|.+.+. +..++ |||.||..||..|+..+ ..||+||..+...+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i 71 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRITSL 71 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSST
T ss_pred ccCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhH
Confidence 4567899999999988664 67787 99999999999999875 789999998876543
No 17
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=1.1e-11 Score=96.44 Aligned_cols=55 Identities=20% Similarity=0.382 Sum_probs=45.4
Q ss_pred CCCCCccccccccccccccceeecCCCCceeeCCchhhhhccCCCCCcccccccCCCC
Q 038034 110 GSKEGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGHASCPLCRYKFDGRDR 167 (422)
Q Consensus 110 ~~~e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~l~~~~~ 167 (422)
...+...|+||++.|.+ .+.+++ |+|.||..||..|+..+..||+||..+...+.
T Consensus 11 ~~~~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 65 (72)
T 2djb_A 11 ELTPYILCSICKGYLID--ATTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQP 65 (72)
T ss_dssp CCCGGGSCTTTSSCCSS--CEECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSSCS
T ss_pred hcCCCCCCCCCChHHHC--cCEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCcccc
Confidence 34567899999999876 233346 99999999999999999999999998876544
No 18
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.17 E-value=1.4e-11 Score=94.41 Aligned_cols=50 Identities=30% Similarity=0.782 Sum_probs=42.9
Q ss_pred CCCccccccccccccccceeecCCCCceeeCCchhhhhccCCCCCcccccccC
Q 038034 112 KEGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGHASCPLCRYKFDG 164 (422)
Q Consensus 112 ~e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~l~~ 164 (422)
.++..|+||++.+.+ .+..+| |+|.||..||..|+..+.+||+||.++..
T Consensus 3 ~~~~~C~IC~~~~~~--~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSN--YSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCS--CEEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCCeeCCccccC--CcEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 345689999999875 346687 99999999999999999999999998764
No 19
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=1.2e-11 Score=96.12 Aligned_cols=51 Identities=29% Similarity=0.483 Sum_probs=43.6
Q ss_pred CCCCccccccccccccccceeecCCCCceeeCCchhhhhccCCCCCcccccccCC
Q 038034 111 SKEGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGHASCPLCRYKFDGR 165 (422)
Q Consensus 111 ~~e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~l~~~ 165 (422)
..+...|+||++.+.+ ...++ |+|.||..||..|+..+..||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 12 SLTVPECAICLQTCVH---PVSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPED 62 (71)
T ss_dssp SSSCCBCSSSSSBCSS---EEEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCHH
T ss_pred CCCCCCCccCCcccCC---CEEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCHh
Confidence 3456789999999876 35567 999999999999999999999999988653
No 20
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.14 E-value=4.4e-12 Score=109.48 Aligned_cols=51 Identities=31% Similarity=0.639 Sum_probs=1.1
Q ss_pred CCccccccccccccc-------------c--ceeecCCCCceeeCCchhhhhccCCCCCcccccccC
Q 038034 113 EGLECAVYLSKFEDT-------------E--ILRLLPKCRHAFHMSCIDQWLEGHASCPLCRYKFDG 164 (422)
Q Consensus 113 e~~~CsICLe~f~~~-------------~--~~r~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~l~~ 164 (422)
++..|+||++.|.+. + .+..++ |+|.||..||++||..+.+||+||+++..
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~-C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWEF 112 (117)
T ss_dssp CC-----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCC-cCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence 457999999999752 1 223345 99999999999999999999999998653
No 21
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.13 E-value=4e-11 Score=94.02 Aligned_cols=55 Identities=22% Similarity=0.449 Sum_probs=43.8
Q ss_pred CCCCCccccccccccccccceeecCCCCceeeCCchhhhhccC--CCCCcccccccCCCC
Q 038034 110 GSKEGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGH--ASCPLCRYKFDGRDR 167 (422)
Q Consensus 110 ~~~e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~~--~sCPlCR~~l~~~~~ 167 (422)
...+...|+||++.|.++ ..++.|+|.||..||..|+..+ ..||+||+++...+.
T Consensus 11 ~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2yur_A 11 PIPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDA 67 (74)
T ss_dssp CSCGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTT
T ss_pred cCCCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccc
Confidence 345678999999999863 3465699999999999999865 689999997654443
No 22
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=4.3e-11 Score=92.70 Aligned_cols=52 Identities=29% Similarity=0.627 Sum_probs=43.3
Q ss_pred CCCCccccccccccccccceeecCCCCceeeCCchhhhhc---cCCCCCcccccccCCC
Q 038034 111 SKEGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLE---GHASCPLCRYKFDGRD 166 (422)
Q Consensus 111 ~~e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~---~~~sCPlCR~~l~~~~ 166 (422)
..+...|+||++.|.+ ...++ |+|.||..||..|+. ....||+||.++...+
T Consensus 17 ~~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 17 LQEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCCBCTTTCSBCSS---EEECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred CccCCEeccCCcccCC---eEEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 4567899999999885 44567 999999999999997 4668999999887654
No 23
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.07 E-value=2.3e-11 Score=106.52 Aligned_cols=48 Identities=29% Similarity=0.806 Sum_probs=42.0
Q ss_pred CCccccccccccccccceeecCCCCceeeCCchhhhhccCCCCCcccccccC
Q 038034 113 EGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGHASCPLCRYKFDG 164 (422)
Q Consensus 113 e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~l~~ 164 (422)
++..|+||++.|.+ +..+| |||.||..||..|+..+.+||+||.++..
T Consensus 52 ~~~~C~iC~~~~~~---~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 52 NELQCIICSEYFIE---AVTLN-CAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HHSBCTTTCSBCSS---EEEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred ccCCCcccCcccCC---ceECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 44689999999976 45677 99999999999999999999999998754
No 24
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=4.7e-11 Score=94.83 Aligned_cols=49 Identities=20% Similarity=0.474 Sum_probs=42.4
Q ss_pred CCCCccccccccccccccceeecCCCCceeeCCchhhhhccCCCCCccccccc
Q 038034 111 SKEGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGHASCPLCRYKFD 163 (422)
Q Consensus 111 ~~e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~l~ 163 (422)
..+...|+||++.|.+ +.+++ |+|.||..||..|+.....||+||..+.
T Consensus 12 ~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQN---PVVTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCCS---EEECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCCcCCCchhcC---eeEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 3456789999999976 34577 9999999999999999999999999885
No 25
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=5e-11 Score=91.13 Aligned_cols=52 Identities=17% Similarity=0.395 Sum_probs=42.8
Q ss_pred CCCCccccccccccccccceeecCCCCceeeCCchhhhhc-cCCCCCcccccccCCC
Q 038034 111 SKEGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLE-GHASCPLCRYKFDGRD 166 (422)
Q Consensus 111 ~~e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~-~~~sCPlCR~~l~~~~ 166 (422)
..+...|+||++.+.++. .++ |||.||..||..|+. ....||+||.++...+
T Consensus 12 ~~~~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSPK---QTE-CGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp CCCCEECTTTCCEESSCC---CCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred CCcCCCCCCCChHhcCee---ECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 456679999999987643 366 999999999999994 5778999999887643
No 26
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.04 E-value=1.3e-10 Score=92.65 Aligned_cols=52 Identities=15% Similarity=0.440 Sum_probs=43.2
Q ss_pred CCCccccccccccccccceeecCCCCceeeCCchhhhhccC--CCCCcccccccCCC
Q 038034 112 KEGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGH--ASCPLCRYKFDGRD 166 (422)
Q Consensus 112 ~e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~~--~sCPlCR~~l~~~~ 166 (422)
....+|+||.+.+..++... .|+|.||.+||.+||+.+ .+||+||+.+....
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~ 66 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 66 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCC
T ss_pred CCCCcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCC
Confidence 44579999999998765443 599999999999999987 89999998876543
No 27
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.02 E-value=6.1e-11 Score=93.07 Aligned_cols=52 Identities=23% Similarity=0.542 Sum_probs=43.4
Q ss_pred CCCCCccccccccccccccceeecCCCCceeeCCchhhhhcc-------CCCCCcccccccCC
Q 038034 110 GSKEGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEG-------HASCPLCRYKFDGR 165 (422)
Q Consensus 110 ~~~e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~-------~~sCPlCR~~l~~~ 165 (422)
...+...|+||++.|.+ +..++ |||.||..||..|+.. ...||+||..+...
T Consensus 8 ~~~~~~~C~IC~~~~~~---p~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 8 NVQEEVTCPICLELLTE---PLSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCCCCEETTTTEECSS---CCCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred hcccCCCCcCCCcccCC---eeECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 34567899999999976 34577 9999999999999986 67899999988753
No 28
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=1.7e-10 Score=91.16 Aligned_cols=52 Identities=27% Similarity=0.654 Sum_probs=43.8
Q ss_pred CCCCccccccccccccccceeecCCCCceeeCCchhhhhcc------CCCCCcccccccCCC
Q 038034 111 SKEGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEG------HASCPLCRYKFDGRD 166 (422)
Q Consensus 111 ~~e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~------~~sCPlCR~~l~~~~ 166 (422)
..+...|+||++.|.+ ...++ |+|.||..||..|+.. ...||+||..+...+
T Consensus 16 ~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQ---PLSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN 73 (85)
T ss_dssp CCCCCCCTTTCSCCSS---CBCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred ccCCCCCCCCCcccCC---ceeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence 4567899999999876 34567 9999999999999987 788999999887643
No 29
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.01 E-value=7.7e-11 Score=100.33 Aligned_cols=55 Identities=20% Similarity=0.610 Sum_probs=46.4
Q ss_pred CCCccccccccccccc----cceeecCCCCceeeCCchhhhhccCCCCCcccccccCCCC
Q 038034 112 KEGLECAVYLSKFEDT----EILRLLPKCRHAFHMSCIDQWLEGHASCPLCRYKFDGRDR 167 (422)
Q Consensus 112 ~e~~~CsICLe~f~~~----~~~r~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~l~~~~~ 167 (422)
.+...|+||++.|.++ ..+..++ |||.||..||.+|+..+.+||+||+.+...+.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l 63 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 63 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCE
T ss_pred CCCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCccccc
Confidence 3567999999999875 4446777 99999999999999999999999998876543
No 30
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.01 E-value=1.3e-10 Score=91.28 Aligned_cols=51 Identities=22% Similarity=0.508 Sum_probs=43.4
Q ss_pred CCCCccccccccccccccceeecCCCCceeeCCchhhhhcc-CCCCCcccccccCC
Q 038034 111 SKEGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEG-HASCPLCRYKFDGR 165 (422)
Q Consensus 111 ~~e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~-~~sCPlCR~~l~~~ 165 (422)
..+...|+||++.|.++ ..++ |||.||..||..|+.. +.+||+||.++...
T Consensus 5 ~~~~~~C~IC~~~~~~P---v~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDP---VIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp CSSSSSCTTTSCCCSSE---EEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred CcccCCCCCccccccCC---EEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 44678999999999763 4567 9999999999999987 78899999988654
No 31
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.99 E-value=6.2e-11 Score=98.37 Aligned_cols=50 Identities=36% Similarity=0.770 Sum_probs=42.3
Q ss_pred CCCccccccccccccccceee-cCCCCceeeCCchhhhhccC-CCCCcccccccCC
Q 038034 112 KEGLECAVYLSKFEDTEILRL-LPKCRHAFHMSCIDQWLEGH-ASCPLCRYKFDGR 165 (422)
Q Consensus 112 ~e~~~CsICLe~f~~~~~~r~-Lp~C~H~FH~~CI~~WL~~~-~sCPlCR~~l~~~ 165 (422)
.+...|+||++.|.+ +.. ++ |||.||..||..|+... ..||+||.++...
T Consensus 20 ~~~~~C~IC~~~~~~---p~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (100)
T 3lrq_A 20 AEVFRCFICMEKLRD---ARLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR 71 (100)
T ss_dssp HHHTBCTTTCSBCSS---EEECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCCccCCccccC---ccccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCHH
Confidence 356789999999975 344 76 99999999999999987 6999999988654
No 32
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.99 E-value=1.4e-10 Score=91.55 Aligned_cols=51 Identities=27% Similarity=0.630 Sum_probs=43.3
Q ss_pred CCCCccccccccccccccceeecCCCCceeeCCchhhhhcc------CCCCCcccccccCC
Q 038034 111 SKEGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEG------HASCPLCRYKFDGR 165 (422)
Q Consensus 111 ~~e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~------~~sCPlCR~~l~~~ 165 (422)
..+...|+||++.|.++ ..++ |+|.||..||..|+.. ...||+||..+...
T Consensus 16 ~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEP---VSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CCTTTSCTTTCSCCSSC---EECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred CccCCCCcCCChhhCcc---eeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 45677999999998764 3677 9999999999999987 67899999988754
No 33
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.95 E-value=2.1e-10 Score=87.32 Aligned_cols=54 Identities=19% Similarity=0.462 Sum_probs=42.6
Q ss_pred CCcccccccc-ccccccce-eecCCCCceeeCCchhhhhcc-CCCCCcccccccCCCC
Q 038034 113 EGLECAVYLS-KFEDTEIL-RLLPKCRHAFHMSCIDQWLEG-HASCPLCRYKFDGRDR 167 (422)
Q Consensus 113 e~~~CsICLe-~f~~~~~~-r~Lp~C~H~FH~~CI~~WL~~-~~sCPlCR~~l~~~~~ 167 (422)
++..|+||++ .|.++... ..++ |||.||..||.+|+.. ...||+||.++...+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 58 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF 58 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred CCCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCccccccc
Confidence 3568999999 77776543 3466 9999999999999764 5679999998876543
No 34
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.94 E-value=1.5e-10 Score=95.32 Aligned_cols=49 Identities=22% Similarity=0.595 Sum_probs=41.4
Q ss_pred CCccccccccccccccceeecCCCCceeeCCchhhhhccCCCCCcccccccC
Q 038034 113 EGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGHASCPLCRYKFDG 164 (422)
Q Consensus 113 e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~l~~ 164 (422)
+...|+||++.|.++ +..++ |||.||..||..|+..+..||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNIA--MIIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSSE--EECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCCc--CEECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 457899999999863 22236 99999999999999999999999998765
No 35
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=3.4e-10 Score=85.56 Aligned_cols=45 Identities=33% Similarity=0.719 Sum_probs=37.7
Q ss_pred CCCCCccccccccccccccceeecCCCCceeeCCchhhhhc---cCCCCCcc
Q 038034 110 GSKEGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLE---GHASCPLC 158 (422)
Q Consensus 110 ~~~e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~---~~~sCPlC 158 (422)
...+...|+||++.|.+ +..++ |||.||..||..|+. ....||+|
T Consensus 16 ~~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSS---CEECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCC---eEEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 34567899999999886 44567 999999999999998 46689998
No 36
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.93 E-value=2.1e-10 Score=97.62 Aligned_cols=55 Identities=20% Similarity=0.623 Sum_probs=45.7
Q ss_pred CCCCccccccccccccc----cceeecCCCCceeeCCchhhhhccCCCCCcccccccCCC
Q 038034 111 SKEGLECAVYLSKFEDT----EILRLLPKCRHAFHMSCIDQWLEGHASCPLCRYKFDGRD 166 (422)
Q Consensus 111 ~~e~~~CsICLe~f~~~----~~~r~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~l~~~~ 166 (422)
..+...|+||++.|.+. ..+..++ |||.||..||++|+..+.+||+||.++...+
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 127 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChhc
Confidence 34667899999999864 2335666 9999999999999999999999999887543
No 37
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.91 E-value=3.2e-10 Score=94.87 Aligned_cols=52 Identities=27% Similarity=0.615 Sum_probs=43.2
Q ss_pred CCCCccccccccccccccceeecCCCCceeeCCchhhhhccCCCCCcccccccCC
Q 038034 111 SKEGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGHASCPLCRYKFDGR 165 (422)
Q Consensus 111 ~~e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~l~~~ 165 (422)
..+...|+||++.|.+. +.+++ |||.||..||..|+..+..||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDA--TTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp HGGGTBCTTTSSBCSSE--EEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred cCCcCCCccCChHHhCc--CEeCC-CCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 34567999999999762 33347 999999999999999999999999987653
No 38
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.90 E-value=3.9e-10 Score=96.59 Aligned_cols=49 Identities=24% Similarity=0.560 Sum_probs=41.2
Q ss_pred CCCccccccccccccccceeecCCCCceeeCCchhhhhccC-CCCCcccccccC
Q 038034 112 KEGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGH-ASCPLCRYKFDG 164 (422)
Q Consensus 112 ~e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~~-~sCPlCR~~l~~ 164 (422)
.+...|+||++.|.+ +..++ |||.||..||..|+..+ ..||+||.++..
T Consensus 50 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVFR---PITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHcC---cEEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 345689999999986 44567 99999999999999854 489999998875
No 39
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.90 E-value=5e-10 Score=90.69 Aligned_cols=50 Identities=22% Similarity=0.473 Sum_probs=41.1
Q ss_pred CCCCccccccccccccccceeecCCCCceeeCCchhhhhcc--CCCCCccccccc
Q 038034 111 SKEGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEG--HASCPLCRYKFD 163 (422)
Q Consensus 111 ~~e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~--~~sCPlCR~~l~ 163 (422)
..+...|+||++.|.+ +..++.|||.||..||..|+.. +..||+||..+.
T Consensus 10 ~~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 10 IPDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCTTTEETTTTEECSS---CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCcCCCCCCCChhhcC---ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 4567899999999986 3456559999999999999975 368999998864
No 40
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=4.6e-10 Score=82.92 Aligned_cols=44 Identities=30% Similarity=0.818 Sum_probs=36.9
Q ss_pred CCCCccccccccccccccceeecCCCCceeeCCchhhhh---ccCCCCCcc
Q 038034 111 SKEGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWL---EGHASCPLC 158 (422)
Q Consensus 111 ~~e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL---~~~~sCPlC 158 (422)
..+...|+||++.|.++ ..++ |+|.||..||..|+ .....||+|
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEP---VIIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSSC---CCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCcc---EeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 45677999999999874 4577 99999999999995 457789998
No 41
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.88 E-value=3.1e-10 Score=101.80 Aligned_cols=49 Identities=29% Similarity=0.620 Sum_probs=41.2
Q ss_pred CCccccccccccccccceeecCCCCceeeCCchhhhhcc-CCCCCcccccccC
Q 038034 113 EGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEG-HASCPLCRYKFDG 164 (422)
Q Consensus 113 e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~-~~sCPlCR~~l~~ 164 (422)
+...|+||++.|.+ .+..++ |||.||..||..|+.. +..||+||.++..
T Consensus 53 ~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKN--TMTTKE-CLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhC--cCEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 45689999999986 233347 9999999999999987 7889999998754
No 42
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.85 E-value=7.6e-10 Score=92.35 Aligned_cols=50 Identities=28% Similarity=0.629 Sum_probs=41.2
Q ss_pred CCccccccccccccccceeecCCCCceeeCCchhhhhccCC---CCCcccccccCCC
Q 038034 113 EGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGHA---SCPLCRYKFDGRD 166 (422)
Q Consensus 113 e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~~~---sCPlCR~~l~~~~ 166 (422)
+...|+||++.|.++ ..++ |||.||..||..|+..+. .||+||.++...+
T Consensus 20 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 72 (112)
T 1jm7_A 20 KILECPICLELIKEP---VSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72 (112)
T ss_dssp HHTSCSSSCCCCSSC---CBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred CCCCCcccChhhcCe---EECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhh
Confidence 456899999998763 3467 999999999999998654 8999999877643
No 43
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.83 E-value=1.8e-09 Score=80.44 Aligned_cols=48 Identities=23% Similarity=0.527 Sum_probs=40.1
Q ss_pred CCCccccccccccccccceeecCCCCceeeCCchhhhhccCCCCCcccccccCCC
Q 038034 112 KEGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGHASCPLCRYKFDGRD 166 (422)
Q Consensus 112 ~e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~l~~~~ 166 (422)
.+...|+||++.|.+ +..+| |+|.||..||..| ...||+||+.+....
T Consensus 4 ~~~~~C~IC~~~~~~---p~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 4 FQFLRCQQCQAEAKC---PKLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLGA 51 (56)
T ss_dssp CCCSSCSSSCSSCBC---CSCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred ccCCCceEeCCccCC---eEEcC-CCCcccHHHHccC---CCCCCcCCcEeecCC
Confidence 456789999999986 45688 9999999999985 678999999887543
No 44
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.82 E-value=4.8e-10 Score=94.69 Aligned_cols=50 Identities=24% Similarity=0.630 Sum_probs=41.8
Q ss_pred CCCCccccccccccccccceeecCCCCceeeCCchhhhhcc-CCCCCcccccccC
Q 038034 111 SKEGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEG-HASCPLCRYKFDG 164 (422)
Q Consensus 111 ~~e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~-~~sCPlCR~~l~~ 164 (422)
..++..|+||++.|.+ +..++ |||.||..||..|+.. ...||+||..+..
T Consensus 12 ~~~~~~C~iC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 12 SLSECQCGICMEILVE---PVTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp CHHHHBCTTTCSBCSS---CEECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCCccCCcccCc---eeEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 3456789999999876 44567 9999999999999976 6789999998763
No 45
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.82 E-value=8.1e-10 Score=94.02 Aligned_cols=52 Identities=21% Similarity=0.451 Sum_probs=43.5
Q ss_pred CCCCCccccccccccccccceeecCCCCceeeCCchhhhhccCC-CCCcccccccCC
Q 038034 110 GSKEGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGHA-SCPLCRYKFDGR 165 (422)
Q Consensus 110 ~~~e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~~~-sCPlCR~~l~~~ 165 (422)
...+...|+||++.+.++ ..++ |||.||..||..|+.... .||+||.++...
T Consensus 14 ~~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 14 PLESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CCCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCcCChhhcCe---EECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 455678999999999864 4567 999999999999998755 999999988653
No 46
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.79 E-value=1.2e-09 Score=97.50 Aligned_cols=49 Identities=18% Similarity=0.456 Sum_probs=41.6
Q ss_pred CCccccccccccccccceeecCCCCceeeCCchhhhhccCC-CCCcccccccCC
Q 038034 113 EGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGHA-SCPLCRYKFDGR 165 (422)
Q Consensus 113 e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~~~-sCPlCR~~l~~~ 165 (422)
+...|+||++.|.+ +..++ |||.||..||..|+.... .||+||.++...
T Consensus 77 ~~~~C~IC~~~~~~---pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQ---PVTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcC---CEEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 45689999999976 34477 999999999999998754 899999988765
No 47
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.76 E-value=4.4e-09 Score=84.16 Aligned_cols=56 Identities=18% Similarity=0.387 Sum_probs=43.1
Q ss_pred CCCCccccccccccccccce-eecCCCCceeeCCchhhhhc-cCCCCCcccccccCCCC
Q 038034 111 SKEGLECAVYLSKFEDTEIL-RLLPKCRHAFHMSCIDQWLE-GHASCPLCRYKFDGRDR 167 (422)
Q Consensus 111 ~~e~~~CsICLe~f~~~~~~-r~Lp~C~H~FH~~CI~~WL~-~~~sCPlCR~~l~~~~~ 167 (422)
..++..|+||++.+...+.. ..++ |||.||..|+..|+. ....||+||+++.....
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred cccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 45678999999998654332 2245 999999999999875 46789999998876543
No 48
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.75 E-value=3.7e-09 Score=88.29 Aligned_cols=51 Identities=16% Similarity=0.147 Sum_probs=44.3
Q ss_pred CCCCccccccccccccccceeecCCCCceeeCCchhhhhccCCCCCcccccccCC
Q 038034 111 SKEGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGHASCPLCRYKFDGR 165 (422)
Q Consensus 111 ~~e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~l~~~ 165 (422)
..+...|+||++.|.+ +.+++ |||.|+..||..|+..+.+||+|+.++...
T Consensus 26 ~p~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 76 (100)
T 2kre_A 26 APDEFRDPLMDTLMTD---PVRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTES 76 (100)
T ss_dssp CSTTTBCTTTCSBCSS---EEEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCTT
T ss_pred CcHhhCCcCccCcccC---CeECC-CCCEEchHHHHHHHHcCCCCCCCCCCCChh
Confidence 3457899999999988 45677 999999999999999999999999988653
No 49
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.74 E-value=1.5e-09 Score=91.69 Aligned_cols=50 Identities=28% Similarity=0.554 Sum_probs=42.1
Q ss_pred CCccccccccccccccceeecCCCCceeeCCchhhhhcc-CCCCCcccccccCCC
Q 038034 113 EGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEG-HASCPLCRYKFDGRD 166 (422)
Q Consensus 113 e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~-~~sCPlCR~~l~~~~ 166 (422)
+...|+||++.+.+ +..++ |||.||..||..|+.. ...||+||.++...+
T Consensus 22 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 22 KSISCQICEHILAD---PVETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72 (116)
T ss_dssp HHTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCcHhcC---cEEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence 45689999999876 34477 9999999999999987 779999999887543
No 50
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.73 E-value=4.5e-09 Score=89.27 Aligned_cols=47 Identities=21% Similarity=0.484 Sum_probs=39.6
Q ss_pred CCCccccccccccccccceeec-CCCCceeeCCchhhhhccCCCCCcccccccC
Q 038034 112 KEGLECAVYLSKFEDTEILRLL-PKCRHAFHMSCIDQWLEGHASCPLCRYKFDG 164 (422)
Q Consensus 112 ~e~~~CsICLe~f~~~~~~r~L-p~C~H~FH~~CI~~WL~~~~sCPlCR~~l~~ 164 (422)
.+...|+||++.|.+ +..+ + |||.||..||..|+. ..||+||..+..
T Consensus 20 ~~~~~C~IC~~~~~~---pv~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 20 EKLLRCSRCTNILRE---PVCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAWI 67 (117)
T ss_dssp HHTTSCSSSCSCCSS---CBCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred hhCCCCCCCChHhhC---ccEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCcc
Confidence 346799999999976 3445 6 999999999999998 889999998754
No 51
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.72 E-value=3.7e-09 Score=85.50 Aligned_cols=51 Identities=16% Similarity=0.143 Sum_probs=44.1
Q ss_pred CCCCccccccccccccccceeecCCCCceeeCCchhhhhccCCCCCcccccccCC
Q 038034 111 SKEGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGHASCPLCRYKFDGR 165 (422)
Q Consensus 111 ~~e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~l~~~ 165 (422)
..+...|+||++.|.+ +.+++ |||.|+..||..|+..+.+||+|+.++...
T Consensus 11 ~p~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTD---PVRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTES 61 (85)
T ss_dssp CCTTTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CchheECcccCchhcC---CeECC-CCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence 3457899999999988 55677 999999999999999999999999887643
No 52
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.71 E-value=6.3e-09 Score=86.58 Aligned_cols=51 Identities=16% Similarity=0.138 Sum_probs=44.1
Q ss_pred CCCCccccccccccccccceeecCCCC-ceeeCCchhhhhccCCCCCcccccccCC
Q 038034 111 SKEGLECAVYLSKFEDTEILRLLPKCR-HAFHMSCIDQWLEGHASCPLCRYKFDGR 165 (422)
Q Consensus 111 ~~e~~~CsICLe~f~~~~~~r~Lp~C~-H~FH~~CI~~WL~~~~sCPlCR~~l~~~ 165 (422)
..+...|+||++.|.+ +.+++ || |.|+..||..||..+.+||+|+.++...
T Consensus 19 ~p~~~~CpI~~~~m~d---PV~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCD---PVVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTMD 70 (98)
T ss_dssp CCTTTBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred CcHhcCCcCccccccC---CeECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCChh
Confidence 3457799999999988 44577 99 9999999999999999999999988754
No 53
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.65 E-value=5.3e-09 Score=106.64 Aligned_cols=49 Identities=29% Similarity=0.742 Sum_probs=42.2
Q ss_pred CCccccccccccccccceeecCCCCceeeCCchhhhhc-cCCCCCcccccccCC
Q 038034 113 EGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLE-GHASCPLCRYKFDGR 165 (422)
Q Consensus 113 e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~-~~~sCPlCR~~l~~~ 165 (422)
....|+||++.+.+ +..+| |||.||..||..|+. .+.+||+||.++...
T Consensus 331 ~~~~C~ICle~~~~---pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 331 TFQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSSBCTTTSSSBCC---EEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCCccCcCCCC---eEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 34689999999865 56688 999999999999998 688999999988754
No 54
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.64 E-value=5.9e-09 Score=79.97 Aligned_cols=50 Identities=14% Similarity=0.327 Sum_probs=40.1
Q ss_pred CCCccccccccccccccceeecCCCCce-eeCCchhhhhccCCCCCccccccc
Q 038034 112 KEGLECAVYLSKFEDTEILRLLPKCRHA-FHMSCIDQWLEGHASCPLCRYKFD 163 (422)
Q Consensus 112 ~e~~~CsICLe~f~~~~~~r~Lp~C~H~-FH~~CI~~WL~~~~sCPlCR~~l~ 163 (422)
.++.+|.||++.+.+.. +..+| |||. |+..|+..|+..+..||+||+++.
T Consensus 6 ~~~~~C~IC~~~~~~~~-~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGC-IVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCEE-EEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCCEE-EECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 35568999999876531 11248 9999 799999999998899999999874
No 55
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.62 E-value=6.7e-09 Score=104.18 Aligned_cols=53 Identities=25% Similarity=0.599 Sum_probs=40.9
Q ss_pred CCCccccccccccccccce----eecCCCCceeeCCchhhhhccC-----------CCCCcccccccC
Q 038034 112 KEGLECAVYLSKFEDTEIL----RLLPKCRHAFHMSCIDQWLEGH-----------ASCPLCRYKFDG 164 (422)
Q Consensus 112 ~e~~~CsICLe~f~~~~~~----r~Lp~C~H~FH~~CI~~WL~~~-----------~sCPlCR~~l~~ 164 (422)
.+..+|+||++.+.++..+ ...++|+|.||..||.+||+.. .+||.||+++..
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 3567999999999873322 2233599999999999999752 469999998764
No 56
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.61 E-value=7.6e-09 Score=91.39 Aligned_cols=51 Identities=14% Similarity=0.258 Sum_probs=42.5
Q ss_pred CCCCccccccccccccccceeecCCCCceeeCCchhhhhccCC-CCCcccccccCC
Q 038034 111 SKEGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGHA-SCPLCRYKFDGR 165 (422)
Q Consensus 111 ~~e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~~~-sCPlCR~~l~~~ 165 (422)
..+...|+||++.|.++ ..++ |||.||..||..|+.... .||+||.++...
T Consensus 28 l~~~~~C~IC~~~~~~p---v~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 79 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRP---FQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGIYE 79 (141)
T ss_dssp CCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTCCC
T ss_pred CCcCcCCCCCChhhcCc---EECC-CCCccCHHHHHHHHhcCCCCCCCCCCccccc
Confidence 45677999999999875 3466 999999999999998654 899999987544
No 57
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.58 E-value=2.1e-08 Score=95.35 Aligned_cols=49 Identities=12% Similarity=0.159 Sum_probs=41.5
Q ss_pred CCCccccccccccccccceeecCCCCceeeCCchhhhhcc-CCCCCcccccccC
Q 038034 112 KEGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEG-HASCPLCRYKFDG 164 (422)
Q Consensus 112 ~e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~-~~sCPlCR~~l~~ 164 (422)
.+...|+||++.|.+ +.++| |||.||..||..|+.. +.+||+||.++..
T Consensus 206 ~~~~~c~i~~~~~~d---Pv~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTTTCSBCSS---EEECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CcccCCcCcCCHhcC---CeECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 356799999999987 45677 9999999999999986 4459999998864
No 58
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.53 E-value=1.7e-08 Score=77.21 Aligned_cols=50 Identities=18% Similarity=0.345 Sum_probs=40.1
Q ss_pred CCCccccccccccccccceeecCCCCce-eeCCchhhhhccCCCCCccccccc
Q 038034 112 KEGLECAVYLSKFEDTEILRLLPKCRHA-FHMSCIDQWLEGHASCPLCRYKFD 163 (422)
Q Consensus 112 ~e~~~CsICLe~f~~~~~~r~Lp~C~H~-FH~~CI~~WL~~~~sCPlCR~~l~ 163 (422)
.....|.||++...+.. +..+| |||. |+..|+..|...+..||+||+++.
T Consensus 5 ~~~~~C~IC~~~~~~~~-~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGN-IIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSCEE-EEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CcCCCCcccCCcCCCeE-EEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 34568999999865522 22348 9998 999999999988889999999874
No 59
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.51 E-value=1.4e-08 Score=79.74 Aligned_cols=44 Identities=20% Similarity=0.520 Sum_probs=37.7
Q ss_pred CCccccccccccccccceeecCCCCce-eeCCchhhhhccCCCCCcccccccC
Q 038034 113 EGLECAVYLSKFEDTEILRLLPKCRHA-FHMSCIDQWLEGHASCPLCRYKFDG 164 (422)
Q Consensus 113 e~~~CsICLe~f~~~~~~r~Lp~C~H~-FH~~CI~~WL~~~~sCPlCR~~l~~ 164 (422)
+...|+||++.+.+ +..+| |||. ||..|+..| ..||+||.++..
T Consensus 23 ~~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCC---EEEET-TCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCC---EEEcC-CCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 45689999998765 55678 9999 999999999 899999998754
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.46 E-value=3.6e-08 Score=88.57 Aligned_cols=53 Identities=21% Similarity=0.429 Sum_probs=43.7
Q ss_pred CCCCCCccccccccccccccceeecCCCCceeeCCchhhhhccC-CCCCcccccccCC
Q 038034 109 RGSKEGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGH-ASCPLCRYKFDGR 165 (422)
Q Consensus 109 ~~~~e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~~-~sCPlCR~~l~~~ 165 (422)
....+...|+||++.|.++ ..++ |||.||..||..|+... ..||+||.++...
T Consensus 13 ~~~~~~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 13 PPLESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp SCCCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred cCCCCCCCCCCCChhhcCc---EECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 3456778999999999874 4477 99999999999999764 4999999887653
No 61
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.45 E-value=2.7e-08 Score=81.67 Aligned_cols=48 Identities=21% Similarity=0.493 Sum_probs=39.2
Q ss_pred CCCCccccccccccccccceeecCCCCceeeCCchhhhhccC------CCCCc--cccc
Q 038034 111 SKEGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGH------ASCPL--CRYK 161 (422)
Q Consensus 111 ~~e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~~------~sCPl--CR~~ 161 (422)
..+...|+||++.|.+ +.+++.|||.|+..||..|+..+ .+||+ |+..
T Consensus 4 ~~~~~~CPI~~~~~~d---PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKK---PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CSSCCBCTTTCSBCSS---EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CCcEeECcCcCchhcC---CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 3456789999999987 44454499999999999999764 48999 9866
No 62
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.39 E-value=8.4e-08 Score=78.30 Aligned_cols=49 Identities=22% Similarity=0.563 Sum_probs=41.0
Q ss_pred CCCccccccccccccccceeecCCCCceeeCCchhhhhcc--------CCCCCc--cccc
Q 038034 112 KEGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEG--------HASCPL--CRYK 161 (422)
Q Consensus 112 ~e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~--------~~sCPl--CR~~ 161 (422)
.+..+|+||++.+..++.+.+.+ |+|.||..||..++.. ...||. |+..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 45678999999998877776677 9999999999999863 236999 9987
No 63
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.37 E-value=9.9e-08 Score=72.72 Aligned_cols=48 Identities=19% Similarity=0.543 Sum_probs=37.6
Q ss_pred CCCccccccccccccccceeecCCCC--c---eeeCCchhhhhcc--CCCCCccccccc
Q 038034 112 KEGLECAVYLSKFEDTEILRLLPKCR--H---AFHMSCIDQWLEG--HASCPLCRYKFD 163 (422)
Q Consensus 112 ~e~~~CsICLe~f~~~~~~r~Lp~C~--H---~FH~~CI~~WL~~--~~sCPlCR~~l~ 163 (422)
.+...|.||+++. ++.+ ++| |. | .||..||.+|+.. +.+||+|++.+.
T Consensus 4 ~~~~~CrIC~~~~--~~~l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEEL--GNER-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEEC--SCCC-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCC--CCce-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 4567899999973 3334 577 65 4 9999999999974 678999998775
No 64
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.32 E-value=1.6e-07 Score=86.47 Aligned_cols=51 Identities=12% Similarity=0.126 Sum_probs=42.6
Q ss_pred CCCCccccccccccccccceeecCCCCceeeCCchhhhhccC-CCCCcccccccCC
Q 038034 111 SKEGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGH-ASCPLCRYKFDGR 165 (422)
Q Consensus 111 ~~e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~~-~sCPlCR~~l~~~ 165 (422)
..+...|+||++.|.+ +.++| |||.|+..||..|+..+ .+||+|+.++...
T Consensus 103 ip~~f~CPI~~elm~D---PV~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 103 IPDYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQD 154 (179)
T ss_dssp CCGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CcHhhcccCccccCCC---CeECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence 4567899999999987 45667 99999999999999864 4799999887643
No 65
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.25 E-value=2.7e-07 Score=72.41 Aligned_cols=44 Identities=20% Similarity=0.520 Sum_probs=36.4
Q ss_pred CCccccccccccccccceeecCCCCce-eeCCchhhhhccCCCCCcccccccC
Q 038034 113 EGLECAVYLSKFEDTEILRLLPKCRHA-FHMSCIDQWLEGHASCPLCRYKFDG 164 (422)
Q Consensus 113 e~~~CsICLe~f~~~~~~r~Lp~C~H~-FH~~CI~~WL~~~~sCPlCR~~l~~ 164 (422)
+...|+||++.+.+ +..+| |||. ||..|+... ..||+||.++..
T Consensus 24 ~~~~C~IC~~~~~~---~~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEAV----DKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCCC---BCCSS-SCCCCBCHHHHHHC----SBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCCC---EEEec-CCCHHHHHHHhhCC----CCCccCCceecC
Confidence 35689999998765 55678 9999 999999653 789999998865
No 66
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.24 E-value=5e-07 Score=70.14 Aligned_cols=45 Identities=29% Similarity=0.699 Sum_probs=37.4
Q ss_pred CCCccccccccccccccceeecCCCCce-eeCCchhhhhccCCCCCcccccccC
Q 038034 112 KEGLECAVYLSKFEDTEILRLLPKCRHA-FHMSCIDQWLEGHASCPLCRYKFDG 164 (422)
Q Consensus 112 ~e~~~CsICLe~f~~~~~~r~Lp~C~H~-FH~~CI~~WL~~~~sCPlCR~~l~~ 164 (422)
.+...|.||++...+ +..+| |+|. ||..|+.. ...||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVN---WVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCC---CEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCC---EEEEC-CCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 346789999998654 66788 9999 99999984 4789999998765
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.19 E-value=2e-07 Score=74.39 Aligned_cols=45 Identities=31% Similarity=0.637 Sum_probs=37.6
Q ss_pred CCccccccccccccccceeecCCCCce-eeCCchhhhhccCCCCCcccccccCC
Q 038034 113 EGLECAVYLSKFEDTEILRLLPKCRHA-FHMSCIDQWLEGHASCPLCRYKFDGR 165 (422)
Q Consensus 113 e~~~CsICLe~f~~~~~~r~Lp~C~H~-FH~~CI~~WL~~~~sCPlCR~~l~~~ 165 (422)
+...|+||++.+.+ +..+| |||. |+..|+..| ..||+||.++...
T Consensus 17 ~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 17 EAMLCMVCCEEEIN---STFCP-CGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp HHTBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred CCCEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 45689999998765 56788 9999 999999988 4999999987653
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.16 E-value=7.2e-07 Score=89.73 Aligned_cols=44 Identities=30% Similarity=0.684 Sum_probs=37.8
Q ss_pred CCccccccccccccccceeecCCCCce-eeCCchhhhhccCCCCCcccccccC
Q 038034 113 EGLECAVYLSKFEDTEILRLLPKCRHA-FHMSCIDQWLEGHASCPLCRYKFDG 164 (422)
Q Consensus 113 e~~~CsICLe~f~~~~~~r~Lp~C~H~-FH~~CI~~WL~~~~sCPlCR~~l~~ 164 (422)
++..|+||++.+.+ +..+| |||. ||..|+..| ..||+||.++..
T Consensus 294 ~~~~C~IC~~~~~~---~v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVS---VVFIP-CGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCC---EEEET-TCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCc---eEEcC-CCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 45689999999865 55678 9999 999999999 789999998753
No 69
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.03 E-value=7.5e-07 Score=67.91 Aligned_cols=50 Identities=20% Similarity=0.305 Sum_probs=42.1
Q ss_pred ccccccccccccccceeecCCCCceeeCCchhhhhccCCCCCcccccccCCCC
Q 038034 115 LECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGHASCPLCRYKFDGRDR 167 (422)
Q Consensus 115 ~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~l~~~~~ 167 (422)
..|+||++.+.++ .+++.|||.|...||.+|+..+.+||+++.++...+.
T Consensus 4 ~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~L 53 (61)
T 2bay_A 4 MLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEI 53 (61)
T ss_dssp CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGC
T ss_pred EEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhc
Confidence 5799999999863 4552399999999999999988899999998876554
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.02 E-value=1.2e-06 Score=85.09 Aligned_cols=51 Identities=29% Similarity=0.581 Sum_probs=40.6
Q ss_pred CCCccccccccccccccceeecCCCCceeeCCchhhhhccC--CCCCc--ccccccCC
Q 038034 112 KEGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGH--ASCPL--CRYKFDGR 165 (422)
Q Consensus 112 ~e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~~--~sCPl--CR~~l~~~ 165 (422)
.....|+||++.|.++ ++.+. |||.|+..||..|+..+ ..||+ |++.+...
T Consensus 179 ~~el~CPIcl~~f~DP--Vts~~-CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~ 233 (267)
T 3htk_C 179 KIELTCPITCKPYEAP--LISRK-CNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMR 233 (267)
T ss_dssp BCCSBCTTTSSBCSSE--EEESS-SCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGG
T ss_pred ceeeECcCccCcccCC--eeeCC-CCCcccHHHHHHHHHhCCCCCCCcccccCcCchh
Confidence 3456899999999774 33345 99999999999999864 46999 99977543
No 71
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.80 E-value=1e-05 Score=77.41 Aligned_cols=53 Identities=17% Similarity=0.423 Sum_probs=42.1
Q ss_pred CCccccccccccccccceeecCCCCceeeCCchhhhhccCC--CCCcccccccCCCCC
Q 038034 113 EGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGHA--SCPLCRYKFDGRDRG 168 (422)
Q Consensus 113 e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~~~--sCPlCR~~l~~~~~~ 168 (422)
....|.||.+....+.. .++|+|.||..|+..|++.+. .||.|+..+......
T Consensus 179 ~i~~C~iC~~iv~~g~~---C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~~ 233 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQS---CETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPK 233 (238)
T ss_dssp TCCBCTTTCSBCSSCEE---CSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCCCC
T ss_pred CCCcCcchhhHHhCCcc---cCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCC
Confidence 35689999999887643 345999999999999998654 899999987665443
No 72
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.61 E-value=1.7e-05 Score=66.29 Aligned_cols=46 Identities=24% Similarity=0.487 Sum_probs=37.6
Q ss_pred cccccccccccccceeecCCCCceeeCCchhhhhc-cCCCCCcccccccC
Q 038034 116 ECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLE-GHASCPLCRYKFDG 164 (422)
Q Consensus 116 ~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~-~~~sCPlCR~~l~~ 164 (422)
-|.+|--.+.. ..|++| |+|+||.+|+..|.+ ...+||.|+.++..
T Consensus 3 fC~~C~~Pi~i--ygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKV--YGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSE--EEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEE--Eeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 47788666554 567899 999999999999985 57899999988764
No 73
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=93.51 E-value=0.058 Score=41.52 Aligned_cols=46 Identities=24% Similarity=0.340 Sum_probs=34.1
Q ss_pred CCCccccccccccccccceeecCCCCceeeCCchhhhhccC----CCCCccccc
Q 038034 112 KEGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGH----ASCPLCRYK 161 (422)
Q Consensus 112 ~e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~~----~sCPlCR~~ 161 (422)
..+..|.||.+. + .+...-.|...||..|++..|... -.||.|...
T Consensus 10 ~~~~~C~vC~~~---~-~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 10 APGARCGVCGDG---T-DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CTTCCCTTTSCC---T-TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCCcCCCCCC---C-eEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 345689999753 3 344555699999999999988653 369999754
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=91.50 E-value=0.059 Score=43.66 Aligned_cols=36 Identities=11% Similarity=0.288 Sum_probs=27.3
Q ss_pred CCccccccccccccccceeecCCCCceeeCCchhh-hh
Q 038034 113 EGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQ-WL 149 (422)
Q Consensus 113 e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~-WL 149 (422)
++..|.||++.|.......-+. |+|.|+..|+.. |.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHHhc
Confidence 4568999998765444444476 999999999998 53
No 75
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=91.44 E-value=0.12 Score=38.87 Aligned_cols=49 Identities=18% Similarity=0.367 Sum_probs=36.1
Q ss_pred CCCccccccccccccccceeecCCCCceeeCCchhhhhc-----cCCCCCcccc
Q 038034 112 KEGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLE-----GHASCPLCRY 160 (422)
Q Consensus 112 ~e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~-----~~~sCPlCR~ 160 (422)
.+...|+||...+.++...+..-.|..-||..|+.--.. ....||.|+.
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 456789999998865555544556999999999875432 3567999975
No 76
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=90.94 E-value=0.19 Score=41.57 Aligned_cols=52 Identities=17% Similarity=0.327 Sum_probs=40.2
Q ss_pred CCCCccccccccccccccceeecCCCCceeeCCchhhhhccCCCCCcccccccCCCC
Q 038034 111 SKEGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGHASCPLCRYKFDGRDR 167 (422)
Q Consensus 111 ~~e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~l~~~~~ 167 (422)
..+-..|-.|+-..+. ++.. ..|.+|..|+...|.....||+|..++...-.
T Consensus 25 ~~G~~nCKsCWf~~k~---LV~C--~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~ 76 (99)
T 2ko5_A 25 HLGPQFCKSCWFENKG---LVEC--NNHYLCLNCLTLLLSVSNRCPICKMPLPTKLR 76 (99)
T ss_dssp CSCCCCCCSSCSCCSS---EEEC--SSCEEEHHHHHHTCSSSSEETTTTEECCCCSC
T ss_pred ccCcccChhhccccCC---eeee--cchhhHHHHHHHHHhhccCCcccCCcCCccee
Confidence 3445689999987553 3221 35999999999999999999999998886533
No 77
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=89.85 E-value=0.2 Score=46.21 Aligned_cols=46 Identities=28% Similarity=0.404 Sum_probs=34.2
Q ss_pred CCCccccccccccccccceeecCCCCceeeCCchhhhhcc----CCCCCccccc
Q 038034 112 KEGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEG----HASCPLCRYK 161 (422)
Q Consensus 112 ~e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~----~~sCPlCR~~ 161 (422)
..+..|.+|... + .+.....|...||..|+.+-+.. .-.||.|+..
T Consensus 5 ~~~~~C~~C~~~---g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 5 PNEDWCAVCQNG---G-DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDI 54 (207)
T ss_dssp SSCSSBTTTCCC---E-EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCCCCCCCCCC---C-ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCc
Confidence 345679999743 3 35566679999999999987764 3469999864
No 78
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=89.73 E-value=0.2 Score=45.20 Aligned_cols=46 Identities=33% Similarity=0.466 Sum_probs=33.8
Q ss_pred CCccccccccccccccceeecCCCCceeeCCchhhhhcc----CCCCCcccccc
Q 038034 113 EGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEG----HASCPLCRYKF 162 (422)
Q Consensus 113 e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~----~~sCPlCR~~l 162 (422)
++..|.||... ++ +.....|...||..|+.+-+.. .-.||.|+..-
T Consensus 3 ~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG---GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC---SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC---Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 45679999753 33 5555569999999999887764 34599998643
No 79
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=89.21 E-value=0.37 Score=36.13 Aligned_cols=47 Identities=21% Similarity=0.409 Sum_probs=33.0
Q ss_pred CCCCccccccccccccccceeecCCCCceeeCCchhhhhcc----CCCCCccccc
Q 038034 111 SKEGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEG----HASCPLCRYK 161 (422)
Q Consensus 111 ~~e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~----~~sCPlCR~~ 161 (422)
...+..|.||.+. + .+.....|...||..|+..-+.. .-.||.|...
T Consensus 6 d~~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 6 DHHMEFCRVCKDG---G-ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp CSSCSSCTTTCCC---S-SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred cCCCCcCCCCCCC---C-CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 3456689999752 3 34444469999999999976653 3359999754
No 80
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=88.18 E-value=0.28 Score=44.90 Aligned_cols=48 Identities=19% Similarity=0.340 Sum_probs=35.2
Q ss_pred Cccccccccccccccc---eeecCCCCceeeCCchhhhh------c-----cCCCCCccccc
Q 038034 114 GLECAVYLSKFEDTEI---LRLLPKCRHAFHMSCIDQWL------E-----GHASCPLCRYK 161 (422)
Q Consensus 114 ~~~CsICLe~f~~~~~---~r~Lp~C~H~FH~~CI~~WL------~-----~~~sCPlCR~~ 161 (422)
+..|+||...|.+++. .+..-.|..-||..|+.-=- . ....||.|+..
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~ 63 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 63 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCC
Confidence 3469999999988763 55555699999999975421 1 15789999753
No 81
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=87.36 E-value=0.37 Score=36.16 Aligned_cols=46 Identities=30% Similarity=0.567 Sum_probs=33.2
Q ss_pred CCCccccccccccccccceeecCCCCceeeCCchhhhhcc----CCCCCccccc
Q 038034 112 KEGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEG----HASCPLCRYK 161 (422)
Q Consensus 112 ~e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~----~~sCPlCR~~ 161 (422)
..+..|.||... ..+.....|...||..|+..-+.. .-.||.|...
T Consensus 9 ~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQG----GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCC----SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCC----CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 345689999863 344455569999999999986643 3469999753
No 82
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.22 E-value=0.36 Score=35.49 Aligned_cols=46 Identities=26% Similarity=0.512 Sum_probs=32.4
Q ss_pred CCCCccccccccccccccceeecCCCCceeeCCchhhhhcc----CCCCCcccc
Q 038034 111 SKEGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEG----HASCPLCRY 160 (422)
Q Consensus 111 ~~e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~----~~sCPlCR~ 160 (422)
...+..|.||... + .+.....|...||..|+.+-|.. .-.||.|..
T Consensus 6 ~~~~~~C~vC~~~---g-~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS---S-CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC---C-eEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 3456789999874 3 34444569999999999976653 234888853
No 83
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=85.66 E-value=0.39 Score=36.50 Aligned_cols=46 Identities=30% Similarity=0.483 Sum_probs=33.2
Q ss_pred CCCccccccccccccccceeecCCCCceeeCCchhhhhcc----CCCCCccccc
Q 038034 112 KEGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEG----HASCPLCRYK 161 (422)
Q Consensus 112 ~e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~----~~sCPlCR~~ 161 (422)
..+..|.||... + .+.....|...||..|+..-|.. .-.||.|...
T Consensus 6 ~~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDG---G-ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCC---S-SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCCC---C-CEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 456789999863 3 34455569999999999976653 3359999753
No 84
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=85.23 E-value=0.6 Score=35.10 Aligned_cols=50 Identities=14% Similarity=0.447 Sum_probs=35.8
Q ss_pred CCCccccccccccc-cccceeecCCCCceeeCCchhhhhc-------cCCCCCccccc
Q 038034 112 KEGLECAVYLSKFE-DTEILRLLPKCRHAFHMSCIDQWLE-------GHASCPLCRYK 161 (422)
Q Consensus 112 ~e~~~CsICLe~f~-~~~~~r~Lp~C~H~FH~~CI~~WL~-------~~~sCPlCR~~ 161 (422)
.++..|.||..... ++..+.....|...||..|+..=+. ..-.||.|...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 45678999998643 3345556667999999999997553 23469999754
No 85
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=83.15 E-value=0.47 Score=36.70 Aligned_cols=52 Identities=15% Similarity=0.261 Sum_probs=36.7
Q ss_pred CCCccccccccccccccceeecCCCCceeeCCchhhhhcc----CCCCCcccccccC
Q 038034 112 KEGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEG----HASCPLCRYKFDG 164 (422)
Q Consensus 112 ~e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~----~~sCPlCR~~l~~ 164 (422)
.+...|.||..... ++.+...-.|...||..|+..-+.. .-.||.|+..+..
T Consensus 16 ~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 16 NQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp CEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 34567999987753 4445455569999999999876542 4569999876643
No 86
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=83.01 E-value=0.56 Score=38.01 Aligned_cols=36 Identities=17% Similarity=0.388 Sum_probs=24.5
Q ss_pred CCCCccccccccccccccceeecCCCCceeeCCchhhh
Q 038034 111 SKEGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQW 148 (422)
Q Consensus 111 ~~e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~W 148 (422)
...+..|.||- .|..++....- -|+-+||..|+.+-
T Consensus 12 ~~~D~~C~VC~-~~t~~~l~pCR-vC~RvfH~~CL~r~ 47 (89)
T 1wil_A 12 VVNDEMCDVCE-VWTAESLFPCR-VCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCSCCCTTTC-CCCSSCCSSCS-SSSSCCCHHHHHHH
T ss_pred CCCCcccCccc-cccccceeccc-cccccccHhhcccc
Confidence 34677899995 33444433222 38999999999985
No 87
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=82.85 E-value=0.36 Score=35.91 Aligned_cols=47 Identities=23% Similarity=0.487 Sum_probs=33.5
Q ss_pred CCccccccccccccccceeecCCCCceeeCCchhhhhcc----CCCCCccccccc
Q 038034 113 EGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEG----HASCPLCRYKFD 163 (422)
Q Consensus 113 e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~----~~sCPlCR~~l~ 163 (422)
.+..|.||... + .+.....|...||..|+.+-+.. .-.||.|.....
T Consensus 4 ~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 4 HEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp CCSSCTTTCCC---S-SCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCCCcCCCCC---C-cEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 45689999873 3 34445569999999999976643 335999976543
No 88
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=82.29 E-value=0.87 Score=36.64 Aligned_cols=51 Identities=20% Similarity=0.361 Sum_probs=37.0
Q ss_pred Ccccccccccccc-ccceeecCCCCceeeCCchhhhhc--------cCCCCCcccccccC
Q 038034 114 GLECAVYLSKFED-TEILRLLPKCRHAFHMSCIDQWLE--------GHASCPLCRYKFDG 164 (422)
Q Consensus 114 ~~~CsICLe~f~~-~~~~r~Lp~C~H~FH~~CI~~WL~--------~~~sCPlCR~~l~~ 164 (422)
+..|.||...-.. +..+...-.|...||..|+..-|. ..-.||.|......
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 4579999876432 345556667999999999998764 23469999876654
No 89
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=81.92 E-value=0.77 Score=38.33 Aligned_cols=45 Identities=24% Similarity=0.542 Sum_probs=31.8
Q ss_pred cccccccccccccceeecCCCCceeeCCchhhhhcc----CCCCCcccc
Q 038034 116 ECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEG----HASCPLCRY 160 (422)
Q Consensus 116 ~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~----~~sCPlCR~ 160 (422)
.|.||...-.+++.+.....|...||..|+++-|.. .-.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 688888653333445555569999999999877654 346999974
No 90
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=81.47 E-value=1.9 Score=35.05 Aligned_cols=47 Identities=26% Similarity=0.530 Sum_probs=34.0
Q ss_pred CCCCccccccccccccccceeecCCCCceeeCCchhhhhcc----CCCCCccccc
Q 038034 111 SKEGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEG----HASCPLCRYK 161 (422)
Q Consensus 111 ~~e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~----~~sCPlCR~~ 161 (422)
...+..|.||... ++ +.....|.-.||..|+++=|.. .-.||.|...
T Consensus 22 d~n~~~C~vC~~~---g~-LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 22 DDSATICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSCCSSSCSS---SC-CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCcCcCcCCC---CC-EEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 3456689999864 33 4445569999999999887654 3359999753
No 91
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=80.81 E-value=0.38 Score=40.08 Aligned_cols=47 Identities=23% Similarity=0.412 Sum_probs=34.6
Q ss_pred ccccccccccccccceeecC-CCCceeeCCchhhhhc----------cCCCCCccccc
Q 038034 115 LECAVYLSKFEDTEILRLLP-KCRHAFHMSCIDQWLE----------GHASCPLCRYK 161 (422)
Q Consensus 115 ~~CsICLe~f~~~~~~r~Lp-~C~H~FH~~CI~~WL~----------~~~sCPlCR~~ 161 (422)
..|.||...|.++...+..- .|..-||..|+.-=-. ..-.||.|+..
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~ 61 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKT 61 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCc
Confidence 47999999987765555553 5999999999864310 34569999874
No 92
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.70 E-value=0.87 Score=36.97 Aligned_cols=50 Identities=24% Similarity=0.399 Sum_probs=35.0
Q ss_pred CCCccccccccccccccceeecCCCCceeeCCchhhhhcc----CCCCCcccccc
Q 038034 112 KEGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEG----HASCPLCRYKF 162 (422)
Q Consensus 112 ~e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~----~~sCPlCR~~l 162 (422)
.+...|.||...-.. +.+...-.|...||..|+.+=|.. .-.||.|...-
T Consensus 14 ~~~~~C~vC~~~~~~-~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~ 67 (92)
T 2e6r_A 14 IDSYICQVCSRGDED-DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILAE 67 (92)
T ss_dssp CCCCCCSSSCCSGGG-GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHHH
T ss_pred cCCCCCccCCCcCCC-CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCcc
Confidence 345679999876433 344455569999999999865543 33599997653
No 93
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=80.39 E-value=0.73 Score=32.93 Aligned_cols=44 Identities=36% Similarity=0.640 Sum_probs=30.0
Q ss_pred cccccccccccccceeecCCCCceeeCCchhhhhcc----CCCCCcccc
Q 038034 116 ECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEG----HASCPLCRY 160 (422)
Q Consensus 116 ~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~----~~sCPlCR~ 160 (422)
.|.||...-..+ .+.....|...||..|++.=+.. .-.||.|+.
T Consensus 2 ~C~vC~~~~~~~-~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDD-KLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCS-CCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCC-CEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 588888654333 34444569999999999865543 235999964
No 94
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=80.06 E-value=1.4 Score=31.78 Aligned_cols=44 Identities=16% Similarity=0.206 Sum_probs=31.1
Q ss_pred cccccccccccccceeecC-CCCceeeCCchhhhh----ccCCCCCccc
Q 038034 116 ECAVYLSKFEDTEILRLLP-KCRHAFHMSCIDQWL----EGHASCPLCR 159 (422)
Q Consensus 116 ~CsICLe~f~~~~~~r~Lp-~C~H~FH~~CI~~WL----~~~~sCPlCR 159 (422)
.|.+|...+.++...+..- .|..-||..|+.--. .....||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4778988886665555554 599999999987532 2466799885
No 95
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=79.72 E-value=1 Score=41.11 Aligned_cols=44 Identities=27% Similarity=0.557 Sum_probs=31.3
Q ss_pred CccccccccccccccceeecCCCCceeeCCchhhhhcc----CCCCCccccc
Q 038034 114 GLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEG----HASCPLCRYK 161 (422)
Q Consensus 114 ~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~----~~sCPlCR~~ 161 (422)
+..|.+|... ++ +.....|...||..|+.+=+.. .-.||.|+..
T Consensus 2 ~~~C~~C~~~---g~-ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC---SS-CCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC---Cc-eeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 3579999854 33 4444469999999999876543 3359999764
No 96
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=78.89 E-value=1.7 Score=35.92 Aligned_cols=47 Identities=26% Similarity=0.485 Sum_probs=31.3
Q ss_pred CCCccccccccccccccceeecCCCCceeeCCchhhhhcc----CCCCCccc
Q 038034 112 KEGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEG----HASCPLCR 159 (422)
Q Consensus 112 ~e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~----~~sCPlCR 159 (422)
.++..|.||.+.=+..+ +..-..|...||..|+...+.. .-.||.|+
T Consensus 5 ~~~~~C~~C~~~g~~~~-ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLD-QFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTTT-SEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCcC-CeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 35678999987632222 2344469999999999988752 33466664
No 97
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=78.78 E-value=1.6 Score=35.77 Aligned_cols=44 Identities=18% Similarity=0.307 Sum_probs=30.6
Q ss_pred CccccccccccccccceeecCCCCceeeCCchhhhhcc---CCCCCccc
Q 038034 114 GLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEG---HASCPLCR 159 (422)
Q Consensus 114 ~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~---~~sCPlCR 159 (422)
...| ||-.....+.. ...-.|.-.||..|+..=+.. .-.||.|+
T Consensus 28 ~vrC-iC~~~~~~~~m-i~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~ 74 (98)
T 2lv9_A 28 VTRC-ICGFTHDDGYM-ICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQ 74 (98)
T ss_dssp BCCC-TTSCCSCSSCE-EEBTTTCBEEETTTTTCCTTSCCSSBCCTTTS
T ss_pred CEEe-ECCCccCCCcE-EEcCCCCCcCcCcCCCCCccCCCCCEECCCCc
Confidence 3567 89877655544 444569999999999764332 34699996
No 98
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=76.71 E-value=1.4 Score=33.90 Aligned_cols=49 Identities=20% Similarity=0.192 Sum_probs=33.9
Q ss_pred CCccccccccccccccceeecCCCCceeeCCchhhhh----ccCCCCCcccccc
Q 038034 113 EGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWL----EGHASCPLCRYKF 162 (422)
Q Consensus 113 e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL----~~~~sCPlCR~~l 162 (422)
+...| ||...+.+++..+..-.|..-||..|+.--- .....||.|+..-
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELS 67 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCC
Confidence 34568 7988766665444555699999999987542 2356799997643
No 99
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=75.28 E-value=1.9 Score=33.71 Aligned_cols=49 Identities=22% Similarity=0.407 Sum_probs=33.3
Q ss_pred CCccccccccccccccceeecCCCCceeeCCchhhhhc-----cCCCCCcccccc
Q 038034 113 EGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLE-----GHASCPLCRYKF 162 (422)
Q Consensus 113 e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~-----~~~sCPlCR~~l 162 (422)
+...| ||...+.++...+..-.|..-||..|+.--.. ....||.|+...
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 44566 99888764444444446999999999864321 345799998654
No 100
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=75.07 E-value=0.66 Score=41.24 Aligned_cols=49 Identities=16% Similarity=0.438 Sum_probs=34.4
Q ss_pred CCCccccccccccccccceeecCCCCceeeCCchhhhh-----ccCCCCCccccc
Q 038034 112 KEGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWL-----EGHASCPLCRYK 161 (422)
Q Consensus 112 ~e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL-----~~~~sCPlCR~~ 161 (422)
.+...| ||...+.++......-.|...||..|+.--. ...-.||.|+..
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 455678 9998876555555555699999999986422 235679999864
No 101
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=74.22 E-value=0.91 Score=36.58 Aligned_cols=53 Identities=17% Similarity=0.355 Sum_probs=36.6
Q ss_pred CCCcccccccccc-ccccceeecCCCCceeeCCchhhhhc--cCCCCCcccccccC
Q 038034 112 KEGLECAVYLSKF-EDTEILRLLPKCRHAFHMSCIDQWLE--GHASCPLCRYKFDG 164 (422)
Q Consensus 112 ~e~~~CsICLe~f-~~~~~~r~Lp~C~H~FH~~CI~~WL~--~~~sCPlCR~~l~~ 164 (422)
.++..|.||...- .+.+.+.....|.-.||..|+..-+. ..-.||.|......
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~ 78 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRAR 78 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTS
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccch
Confidence 4567899998753 33445556667999999999986432 23459999765443
No 102
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=73.11 E-value=2.2 Score=33.65 Aligned_cols=44 Identities=27% Similarity=0.605 Sum_probs=28.9
Q ss_pred cccccccccccccceeecCCCCceeeCCchhhhhcc----C-CCCCcccc
Q 038034 116 ECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEG----H-ASCPLCRY 160 (422)
Q Consensus 116 ~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~----~-~sCPlCR~ 160 (422)
.|.||...-. .+.+...-.|...||..|+++-|.. . -.||.|+.
T Consensus 28 ~C~vC~~~~d-~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSC-GGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCC-CcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 4666655432 2344445569999999999987653 2 46999975
No 103
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=72.58 E-value=1.1 Score=34.67 Aligned_cols=51 Identities=18% Similarity=0.387 Sum_probs=35.2
Q ss_pred CCCCcccccccccc-ccccceeecCCCCceeeCCchhhhhc--cCCCCCccccc
Q 038034 111 SKEGLECAVYLSKF-EDTEILRLLPKCRHAFHMSCIDQWLE--GHASCPLCRYK 161 (422)
Q Consensus 111 ~~e~~~CsICLe~f-~~~~~~r~Lp~C~H~FH~~CI~~WL~--~~~sCPlCR~~ 161 (422)
..++..|.||...- .+++.+...-.|.-.||..|+..-.. ..-.||.|+..
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 34567899998763 34445656667999999999986432 23458888653
No 104
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=71.56 E-value=2.6 Score=32.31 Aligned_cols=47 Identities=19% Similarity=0.384 Sum_probs=31.8
Q ss_pred CCCccccccccccccccceeecCCCCceeeCCchhhhhc---cCCCCCcccc
Q 038034 112 KEGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLE---GHASCPLCRY 160 (422)
Q Consensus 112 ~e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~---~~~sCPlCR~ 160 (422)
.+...| ||-..+. ++..+..-.|..-||..|+.---. ....||.|+.
T Consensus 17 ~~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 455678 9988765 343444445999999999865322 3456999864
No 105
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=71.44 E-value=4.5 Score=32.91 Aligned_cols=45 Identities=22% Similarity=0.394 Sum_probs=28.8
Q ss_pred CCccccccccccccccceeecCC--CC-ceeeCCchhhhhcc----CCCCCcccccc
Q 038034 113 EGLECAVYLSKFEDTEILRLLPK--CR-HAFHMSCIDQWLEG----HASCPLCRYKF 162 (422)
Q Consensus 113 e~~~CsICLe~f~~~~~~r~Lp~--C~-H~FH~~CI~~WL~~----~~sCPlCR~~l 162 (422)
+..-| ||..... + .++..-. |. ..||..|+. |.. +-.||.|+..-
T Consensus 35 e~~yC-iC~~~~~-g-~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCBCS-TTCCBCC-S-CCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCcEE-ECCCCCC-C-CEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 44567 9988643 3 3333444 55 689999997 332 45699997643
No 106
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.27 E-value=3.1 Score=32.65 Aligned_cols=44 Identities=30% Similarity=0.620 Sum_probs=30.2
Q ss_pred cccccccccccccceeecCCCCceeeCCchhhhhcc-----CCCCCcccc
Q 038034 116 ECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEG-----HASCPLCRY 160 (422)
Q Consensus 116 ~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~-----~~sCPlCR~ 160 (422)
.|.||...-. +..+...-.|...||..|+++=|.. .-.||.|..
T Consensus 28 ~C~vC~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHE-PNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCC-STTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCC-CCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 6888876422 3344455569999999999965543 235998864
No 107
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=67.17 E-value=5.5 Score=31.54 Aligned_cols=28 Identities=14% Similarity=0.174 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 038034 37 NIAVVIGVLSIAFSLLFLVLAYAKFCQS 64 (422)
Q Consensus 37 ~i~III~Il~iiflL~~ill~~~r~c~r 64 (422)
..+|+++++..++++.+++++++++|..
T Consensus 10 ~~~Iv~gvi~gilliGllllliwk~~~~ 37 (79)
T 2knc_B 10 ILVVLLSVMGAILLIGLAALLIWKLLIT 37 (79)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777777777777777776643
No 108
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=66.33 E-value=6.3 Score=30.35 Aligned_cols=44 Identities=23% Similarity=0.424 Sum_probs=28.4
Q ss_pred CCccccccccccccccceeecCC--CC-ceeeCCchhhhhcc----CCCCCccccc
Q 038034 113 EGLECAVYLSKFEDTEILRLLPK--CR-HAFHMSCIDQWLEG----HASCPLCRYK 161 (422)
Q Consensus 113 e~~~CsICLe~f~~~~~~r~Lp~--C~-H~FH~~CI~~WL~~----~~sCPlCR~~ 161 (422)
+..-| ||-.... + .++..-. |. ..||..|+. |.. .-.||.|+..
T Consensus 15 ~~~~C-~C~~~~~-g-~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 15 EPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp SCCCS-TTCCCSC-S-SEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred CCCEE-ECCCCCC-C-CEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcc
Confidence 44567 8987642 3 3444444 55 689999997 432 4469999754
No 109
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=65.13 E-value=2.4 Score=47.69 Aligned_cols=51 Identities=16% Similarity=0.200 Sum_probs=42.5
Q ss_pred CCCCccccccccccccccceeecCCCC-ceeeCCchhhhhccCCCCCcccccccCC
Q 038034 111 SKEGLECAVYLSKFEDTEILRLLPKCR-HAFHMSCIDQWLEGHASCPLCRYKFDGR 165 (422)
Q Consensus 111 ~~e~~~CsICLe~f~~~~~~r~Lp~C~-H~FH~~CI~~WL~~~~sCPlCR~~l~~~ 165 (422)
..+...|+|-++.+.+ +.++| .| +.|-..+|.+||..+.+||.=|.++...
T Consensus 888 iP~~F~cPIs~~lM~D---PVilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~ 939 (968)
T 3m62_A 888 VPDEFLDPLMYTIMKD---PVILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKLE 939 (968)
T ss_dssp SCGGGBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred CcHHhCCcchhhHHhC---CeEcC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 3456789999999887 55677 76 6899999999999999999999888753
No 110
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=65.11 E-value=3.1 Score=39.27 Aligned_cols=44 Identities=27% Similarity=0.605 Sum_probs=26.7
Q ss_pred cccccccccccccceeecCCCCceeeCCchhhhhcc-----CCCCCcccc
Q 038034 116 ECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEG-----HASCPLCRY 160 (422)
Q Consensus 116 ~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~-----~~sCPlCR~ 160 (422)
.|.+|...-. ++.+...-.|...||..|+++=|.. .-.||.|..
T Consensus 176 ~C~vC~~~~~-~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCC-CCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 4777765422 3344455569999999999976643 235999964
No 111
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=64.97 E-value=4.4 Score=33.78 Aligned_cols=45 Identities=22% Similarity=0.349 Sum_probs=29.5
Q ss_pred ccccccccccc------cccceeecCCCCceeeCCchhhhhc-------cCCCCCccc
Q 038034 115 LECAVYLSKFE------DTEILRLLPKCRHAFHMSCIDQWLE-------GHASCPLCR 159 (422)
Q Consensus 115 ~~CsICLe~f~------~~~~~r~Lp~C~H~FH~~CI~~WL~-------~~~sCPlCR 159 (422)
..|.||+..-. +++.+.....|+..||..|+..+.. ..-.||.|+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 46999987642 1234445556999999999987632 234566663
No 112
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=63.15 E-value=2.8 Score=31.89 Aligned_cols=48 Identities=19% Similarity=0.358 Sum_probs=33.1
Q ss_pred CCCccccccccccccccceeecC-CCCceeeCCchhhhhc----------cCCCCCccc
Q 038034 112 KEGLECAVYLSKFEDTEILRLLP-KCRHAFHMSCIDQWLE----------GHASCPLCR 159 (422)
Q Consensus 112 ~e~~~CsICLe~f~~~~~~r~Lp-~C~H~FH~~CI~~WL~----------~~~sCPlCR 159 (422)
.....|.+|...+.++...+..- .|.--||..|+.-=-. ..-.||.|.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 34567999999988776666665 6999999999754221 134588885
No 113
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=61.93 E-value=3.6 Score=31.19 Aligned_cols=46 Identities=22% Similarity=0.462 Sum_probs=28.1
Q ss_pred Cccccccccccccccceeec-CCCCceeeCCchhhhh---c-----cCCCCCcccc
Q 038034 114 GLECAVYLSKFEDTEILRLL-PKCRHAFHMSCIDQWL---E-----GHASCPLCRY 160 (422)
Q Consensus 114 ~~~CsICLe~f~~~~~~r~L-p~C~H~FH~~CI~~WL---~-----~~~sCPlCR~ 160 (422)
...| ||-.....+..+.-- +.|..-||..|+.--- . .+..||.||.
T Consensus 10 ~v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 10 KVRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp EECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CEEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 4557 797665555433321 1488999999984211 1 2456999974
No 114
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=61.64 E-value=5 Score=30.79 Aligned_cols=44 Identities=27% Similarity=0.605 Sum_probs=29.0
Q ss_pred cccccccccccccceeecCCCCceeeCCchhhhhcc-----CCCCCcccc
Q 038034 116 ECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEG-----HASCPLCRY 160 (422)
Q Consensus 116 ~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~-----~~sCPlCR~ 160 (422)
.|.||...-. ++.+..--.|...||..|+++=|.. .-.||.|+.
T Consensus 20 ~C~~C~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSC-GGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCC-CCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 4567765422 3344455569999999999965543 336999864
No 115
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=61.19 E-value=3.2 Score=31.99 Aligned_cols=47 Identities=19% Similarity=0.381 Sum_probs=31.8
Q ss_pred CccccccccccccccceeecCCCCceeeCCchhhhh---------ccCCCCCcccccc
Q 038034 114 GLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWL---------EGHASCPLCRYKF 162 (422)
Q Consensus 114 ~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL---------~~~~sCPlCR~~l 162 (422)
...| ||...+..+. .+..-.|..-||..|+.--. .....||.|+..-
T Consensus 16 ~~~C-~C~~~~~~~~-MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 16 ALYC-ICRQPHNNRF-MICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCCS-TTCCCCCSSC-EEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCEE-ECCCccCCCC-EEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 3557 8988776433 33444599999999986432 2467799998643
No 116
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=60.77 E-value=7 Score=32.63 Aligned_cols=48 Identities=19% Similarity=0.337 Sum_probs=31.1
Q ss_pred CCCCccccccccccccccceeecC--CCCceeeCCchhhhhcc----CCCCCcccccccC
Q 038034 111 SKEGLECAVYLSKFEDTEILRLLP--KCRHAFHMSCIDQWLEG----HASCPLCRYKFDG 164 (422)
Q Consensus 111 ~~e~~~CsICLe~f~~~~~~r~Lp--~C~H~FH~~CI~~WL~~----~~sCPlCR~~l~~ 164 (422)
..++..|.+|.+ .+ .+...- .|...||..|+. |.. .-.||.|.-.+..
T Consensus 12 ~~~~~~C~~C~~---~G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~ 65 (107)
T 4gne_A 12 QMHEDYCFQCGD---GG-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECS 65 (107)
T ss_dssp CSSCSSCTTTCC---CS-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTC
T ss_pred CCCCCCCCcCCC---CC-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCC
Confidence 345678999983 23 344443 488999999998 543 2358877654443
No 117
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=60.76 E-value=5.6 Score=34.94 Aligned_cols=46 Identities=22% Similarity=0.307 Sum_probs=32.9
Q ss_pred CCCCccccccccccccccceeecCCCCceeeCCchhhhhc-----------cCCCCCcccc
Q 038034 111 SKEGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLE-----------GHASCPLCRY 160 (422)
Q Consensus 111 ~~e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~-----------~~~sCPlCR~ 160 (422)
...+..|.||-+. ..+...-.|...||..||.+=+. ..-.||+|+.
T Consensus 60 Dg~~d~C~vC~~G----G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCC----SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCC----CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 3456789999763 34445556999999999997653 2446999963
No 118
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=59.63 E-value=16 Score=28.25 Aligned_cols=9 Identities=22% Similarity=0.431 Sum_probs=5.6
Q ss_pred CCceeeCCc
Q 038034 136 CRHAFHMSC 144 (422)
Q Consensus 136 C~H~FH~~C 144 (422)
|.|.|-+.|
T Consensus 59 C~hr~qk~~ 67 (70)
T 2klu_A 59 SPHRFQKTH 67 (70)
T ss_dssp CCCCCCCCC
T ss_pred CcHHHhhcc
Confidence 667666554
No 119
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=57.75 E-value=2.9 Score=34.88 Aligned_cols=46 Identities=24% Similarity=0.503 Sum_probs=31.1
Q ss_pred cccccccccccccceeecCCCCceeeCCchhhhhcc----CCCCCcccccc
Q 038034 116 ECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEG----HASCPLCRYKF 162 (422)
Q Consensus 116 ~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~----~~sCPlCR~~l 162 (422)
.|.||...-..+ .+...-.|...||..|+.+=|.. .-.||.|...+
T Consensus 60 ~C~~C~~~~~~~-~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 60 SCILCGTSENDD-QLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELL 109 (114)
T ss_dssp CCTTTTCCTTTT-TEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHH
T ss_pred ccCcccccCCCC-ceEEcCCCCccccccccCCCccCCCCCCeECccccchh
Confidence 578887654333 34444469999999999975543 23499887644
No 120
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=57.33 E-value=24 Score=26.03 Aligned_cols=25 Identities=44% Similarity=0.444 Sum_probs=13.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 038034 36 PNIAVVIGVLSIAFSLLFLVLAYAK 60 (422)
Q Consensus 36 p~i~III~Il~iiflL~~ill~~~r 60 (422)
|..+|+++++..++++.+++++.++
T Consensus 11 p~wiIi~svl~GLllL~li~~~LwK 35 (54)
T 2knc_A 11 PIWWVLVGVLGGLLLLTILVLAMWK 35 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666565555555544444
No 121
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=57.31 E-value=15 Score=25.82 Aligned_cols=28 Identities=14% Similarity=0.174 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 038034 37 NIAVVIGVLSIAFSLLFLVLAYAKFCQS 64 (422)
Q Consensus 37 ~i~III~Il~iiflL~~ill~~~r~c~r 64 (422)
..+++.+++..++++.+++++..|+|..
T Consensus 9 ~~~Iv~gvi~~ivliGl~lLliwk~~~~ 36 (43)
T 2k9j_B 9 ILVVLLSVMGAILLIGLAALLIWKLLIT 36 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeehHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556667777777777777777777643
No 122
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=56.92 E-value=5.2 Score=29.69 Aligned_cols=43 Identities=26% Similarity=0.441 Sum_probs=27.8
Q ss_pred CCccccccccccccccceeecCC--CC-ceeeCCchhhhhcc----CCCCCcccc
Q 038034 113 EGLECAVYLSKFEDTEILRLLPK--CR-HAFHMSCIDQWLEG----HASCPLCRY 160 (422)
Q Consensus 113 e~~~CsICLe~f~~~~~~r~Lp~--C~-H~FH~~CI~~WL~~----~~sCPlCR~ 160 (422)
+..-| ||-.... + .+...-. |. ..||..|+. |.. .-.||.|+.
T Consensus 8 e~~yC-~C~~~~~-g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVSY-G-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCCC-C-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 44566 8987642 3 3444445 66 699999998 332 346999964
No 123
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=56.30 E-value=5.2 Score=32.88 Aligned_cols=45 Identities=20% Similarity=0.437 Sum_probs=30.1
Q ss_pred cccccccccccccceeecCCCCceeeCCchhhhhcc----CCCCCccccc
Q 038034 116 ECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEG----HASCPLCRYK 161 (422)
Q Consensus 116 ~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~----~~sCPlCR~~ 161 (422)
.|.||...-.+ +.+.....|...||..|+++=+.. .-.||.|...
T Consensus 56 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGED-SKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCC-TTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCC-CCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 56677665333 334445569999999999976653 3459988654
No 124
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=55.89 E-value=7.5 Score=32.20 Aligned_cols=47 Identities=21% Similarity=0.300 Sum_probs=30.2
Q ss_pred CCcccccccccc-----ccccceeecCCCCceeeCCchhhh------h-ccCCCCCccc
Q 038034 113 EGLECAVYLSKF-----EDTEILRLLPKCRHAFHMSCIDQW------L-EGHASCPLCR 159 (422)
Q Consensus 113 e~~~CsICLe~f-----~~~~~~r~Lp~C~H~FH~~CI~~W------L-~~~~sCPlCR 159 (422)
....|.+|+..- ..++.+..-..|+..||..|+..+ + ...-.||-|+
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 346799998763 123345555569999999999642 1 2234566664
No 125
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=55.26 E-value=4.4 Score=31.58 Aligned_cols=48 Identities=19% Similarity=0.337 Sum_probs=31.2
Q ss_pred CCccccccccccccccceeecC--CCCceeeCCchhhhh---------ccCCCCCcccccc
Q 038034 113 EGLECAVYLSKFEDTEILRLLP--KCRHAFHMSCIDQWL---------EGHASCPLCRYKF 162 (422)
Q Consensus 113 e~~~CsICLe~f~~~~~~r~Lp--~C~H~FH~~CI~~WL---------~~~~sCPlCR~~l 162 (422)
+...| ||-.....+. .+..- .|..-||..|+.--- ..+..||.|+..-
T Consensus 15 ~~~~C-iC~~~~~~g~-MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 15 IKVRC-VCGNSLETDS-MIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCC-SSCCCCCCSC-EEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCEEe-ECCCcCCCCC-EEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 44567 7988744443 33333 599999999986422 2356799998643
No 126
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=53.80 E-value=6 Score=29.37 Aligned_cols=43 Identities=23% Similarity=0.425 Sum_probs=27.2
Q ss_pred CCccccccccccccccceeecCC--CC-ceeeCCchhhhhcc----CCCCCcccc
Q 038034 113 EGLECAVYLSKFEDTEILRLLPK--CR-HAFHMSCIDQWLEG----HASCPLCRY 160 (422)
Q Consensus 113 e~~~CsICLe~f~~~~~~r~Lp~--C~-H~FH~~CI~~WL~~----~~sCPlCR~ 160 (422)
+..-| ||..... + .+...-. |. ..||..|+. |.. .-.||.|+.
T Consensus 9 e~~~C-~C~~~~~-g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCC-C-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 34456 8987642 3 3444444 54 689999998 432 346999864
No 127
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=51.77 E-value=31 Score=25.50 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=13.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 038034 36 PNIAVVIGVLSIAFSLLFLVLAYAK 60 (422)
Q Consensus 36 p~i~III~Il~iiflL~~ill~~~r 60 (422)
|.-+|+++++..++++++++++.+|
T Consensus 8 p~WiIi~svl~GLLLL~Lii~~LwK 32 (54)
T 2l8s_A 8 PLWVILLSAFAGLLLLMLLILALWK 32 (54)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666555554444
No 128
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=51.54 E-value=23 Score=25.11 Aligned_cols=7 Identities=29% Similarity=0.743 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 038034 40 VVIGVLS 46 (422)
Q Consensus 40 III~Il~ 46 (422)
|..+++.
T Consensus 12 IA~gVVg 18 (44)
T 2l2t_A 12 IAAGVIG 18 (44)
T ss_dssp HHHHHHH
T ss_pred EEEeehH
Confidence 3334433
No 129
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=51.23 E-value=3.9 Score=34.92 Aligned_cols=48 Identities=25% Similarity=0.454 Sum_probs=32.0
Q ss_pred CCccccccccccccccceeecCCCCceeeCCchhhhhccCCCCCcccc
Q 038034 113 EGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGHASCPLCRY 160 (422)
Q Consensus 113 e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~ 160 (422)
+...|..|-..|..-..--....||.+||..|..........|-.|..
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~ 65 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQR 65 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHH
Confidence 345899999998754333344469999999998887665667888854
No 130
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=50.78 E-value=22 Score=25.26 Aligned_cols=7 Identities=43% Similarity=0.738 Sum_probs=2.9
Q ss_pred hhHHHHH
Q 038034 37 NIAVVIG 43 (422)
Q Consensus 37 ~i~III~ 43 (422)
..+.++|
T Consensus 14 Ia~~vVG 20 (44)
T 2jwa_A 14 IISAVVG 20 (44)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 3344444
No 131
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.74 E-value=17 Score=26.72 Aligned_cols=41 Identities=17% Similarity=0.343 Sum_probs=29.7
Q ss_pred CCccccccccccccccceeecCCCCceeeCCchhhhhccCCCCCccccccc
Q 038034 113 EGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGHASCPLCRYKFD 163 (422)
Q Consensus 113 e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~l~ 163 (422)
....|+.|-..+...+.+... -+..||..| ..|-.|..+|.
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1x61_A 4 GSSGCGGCGEDVVGDGAGVVA--LDRVFHVGC--------FVCSTCRAQLR 44 (72)
T ss_dssp CCCCCSSSCSCCCSSSCCEEC--SSSEECTTT--------CBCSSSCCBCT
T ss_pred CCCCCccCCCccCCCceEEEE--CCCeEcccC--------CcccccCCcCC
Confidence 346899999887764433222 578999999 56889988874
No 132
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=49.93 E-value=11 Score=32.63 Aligned_cols=46 Identities=22% Similarity=0.312 Sum_probs=31.9
Q ss_pred CCCCccccccccccccccceeecCCCCceeeCCchhhhh------c-----cCCCCCcccc
Q 038034 111 SKEGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWL------E-----GHASCPLCRY 160 (422)
Q Consensus 111 ~~e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL------~-----~~~sCPlCR~ 160 (422)
...+..|.||.+. ..+.....|...||..||.+=+ . ..-.|++|+-
T Consensus 54 Dg~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 54 DGMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp TSCBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 3455679999864 3344455699999999999742 1 2346999954
No 133
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.85 E-value=17 Score=26.62 Aligned_cols=41 Identities=12% Similarity=0.184 Sum_probs=30.3
Q ss_pred CccccccccccccccceeecCCCCceeeCCchhhhhccCCCCCcccccccC
Q 038034 114 GLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGHASCPLCRYKFDG 164 (422)
Q Consensus 114 ~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~l~~ 164 (422)
...|+.|-..+...+.+.. . -+..||..| ..|-.|..+|..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~-a-~~~~~H~~C--------F~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLE-Y-GGQTWHEHC--------FLCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSSCEEC-S-TTCCEETTT--------CBCTTTCCBTTT
T ss_pred CCCCccCCCccccCccEEE-E-CccccCccc--------CeECCCCCcCCC
Confidence 4589999999887544422 2 578999999 568889887764
No 134
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=49.76 E-value=14 Score=29.52 Aligned_cols=54 Identities=19% Similarity=0.200 Sum_probs=36.4
Q ss_pred CCCCccccccccccccccceeecCCCCceeeCCchhhhhc-------cCCCCCcccccccC
Q 038034 111 SKEGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLE-------GHASCPLCRYKFDG 164 (422)
Q Consensus 111 ~~e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~-------~~~sCPlCR~~l~~ 164 (422)
..+...|.+|...|..-..--....||++||..|....+. ....|-.|-..+..
T Consensus 6 ~~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~~ 66 (88)
T 1wfk_A 6 SGMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTR 66 (88)
T ss_dssp CCCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHHH
T ss_pred CCcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHHh
Confidence 3455689999999876543333446999999999876542 12347777665543
No 135
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=48.79 E-value=9.5 Score=35.09 Aligned_cols=37 Identities=19% Similarity=0.289 Sum_probs=27.5
Q ss_pred CCccccccccccccccceeecCCCCceeeCCchhhhh
Q 038034 113 EGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWL 149 (422)
Q Consensus 113 e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL 149 (422)
++..|.+|...|..-..--....||++||..|.....
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~~ 196 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQC 196 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEEE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCCee
Confidence 4579999999987544333444699999999977653
No 136
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.62 E-value=19 Score=26.38 Aligned_cols=41 Identities=12% Similarity=0.206 Sum_probs=30.4
Q ss_pred CccccccccccccccceeecCCCCceeeCCchhhhhccCCCCCcccccccC
Q 038034 114 GLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGHASCPLCRYKFDG 164 (422)
Q Consensus 114 ~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~l~~ 164 (422)
...|+.|-..+...+.+... -+..||..| ..|-.|..+|..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~ 45 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKMEY--KGSSWHETC--------FICHRCQQPIGT 45 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEEE--TTEEEETTT--------TCCSSSCCCCCS
T ss_pred CCCCccCCCcccCCceEEEE--CcCeecccC--------CcccccCCccCC
Confidence 35899999998876544322 578999999 568889887754
No 137
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.73 E-value=22 Score=26.22 Aligned_cols=42 Identities=17% Similarity=0.297 Sum_probs=30.3
Q ss_pred CCcccccccccccc--ccceeecCCCCceeeCCchhhhhccCCCCCcccccccC
Q 038034 113 EGLECAVYLSKFED--TEILRLLPKCRHAFHMSCIDQWLEGHASCPLCRYKFDG 164 (422)
Q Consensus 113 e~~~CsICLe~f~~--~~~~r~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~l~~ 164 (422)
....|+-|-..+.. ++.+.. . -+..||..| ..|-.|..+|..
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~~~-a-~~~~wH~~C--------F~C~~C~~~L~~ 47 (72)
T 1x4l_A 4 GSSGCAGCTNPISGLGGTKYIS-F-EERQWHNDC--------FNCKKCSLSLVG 47 (72)
T ss_dssp CSCSBTTTTBCCCCSSSCSCEE-C-SSCEECTTT--------CBCSSSCCBCTT
T ss_pred CCCCCcCCCccccCCCCcceEE-E-CCcccCccc--------CEeccCCCcCCC
Confidence 34589999998875 333322 2 678999999 578899888763
No 138
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=47.66 E-value=6.6 Score=30.25 Aligned_cols=48 Identities=23% Similarity=0.358 Sum_probs=32.0
Q ss_pred ccccccccccccccceeecCCCCceeeCCchhhhhc-----cCCCCCcccccc
Q 038034 115 LECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLE-----GHASCPLCRYKF 162 (422)
Q Consensus 115 ~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~-----~~~sCPlCR~~l 162 (422)
...-||-..+..+...+..-.|.--||..|+.---. ....||.|+...
T Consensus 10 ~~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~ 62 (75)
T 3kqi_A 10 PVYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTH 62 (75)
T ss_dssp CEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHH
T ss_pred eeEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcccC
Confidence 344489887654444545556999999999864322 346799998643
No 139
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=46.65 E-value=16 Score=27.25 Aligned_cols=38 Identities=16% Similarity=0.340 Sum_probs=27.1
Q ss_pred cccccccccccccceeecCCCCceeeCCchhhhhccCCCCCcccccccC
Q 038034 116 ECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGHASCPLCRYKFDG 164 (422)
Q Consensus 116 ~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~l~~ 164 (422)
.|+.|-..+..++.+.. -+..||..| ..|..|..+|..
T Consensus 2 ~C~~C~~~I~~~~~v~a---~~~~~H~~C--------F~C~~C~~~L~~ 39 (76)
T 1iml_A 2 KCPKCDKEVYFAERVTS---LGKDWHRPC--------LKCEKCGKTLTS 39 (76)
T ss_dssp BCTTTSSBCCGGGEEEE---TTEEEETTT--------CBCTTTCCBCCT
T ss_pred cCCCCCCEEECceEEEE---CCccccCCC--------CCccccCccCCC
Confidence 58888888776655433 478889888 558888877664
No 140
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=45.79 E-value=11 Score=34.90 Aligned_cols=37 Identities=16% Similarity=0.284 Sum_probs=27.9
Q ss_pred CCccccccccccccccceeecCCCCceeeCCchhhhh
Q 038034 113 EGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWL 149 (422)
Q Consensus 113 e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL 149 (422)
++..|.+|...|..-..--....||++||..|-....
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~ 199 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYS 199 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCcc
Confidence 4568999999997654333445699999999987654
No 141
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=45.68 E-value=18 Score=25.64 Aligned_cols=28 Identities=21% Similarity=0.452 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 038034 39 AVVIGVLSIAFSLLFLVLAYAKFCQSNH 66 (422)
Q Consensus 39 ~III~Il~iiflL~~ill~~~r~c~r~~ 66 (422)
+|..+++..++++.++++....|.++++
T Consensus 12 ~IA~gVVgGv~~~~ii~~~~~~~~RRr~ 39 (44)
T 2ks1_B 12 SIATGMVGALLLLLVVALGIGLFMRRRH 39 (44)
T ss_dssp SSTHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred eEEeehhHHHHHHHHHHHHHHHHhhhhH
Confidence 3556677666665555554444444443
No 142
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=45.50 E-value=15 Score=28.72 Aligned_cols=38 Identities=21% Similarity=0.355 Sum_probs=27.7
Q ss_pred CCCccccccccccccccceeecCCCCceeeCCchhhhh
Q 038034 112 KEGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWL 149 (422)
Q Consensus 112 ~e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL 149 (422)
.+...|.+|...|..-..--....||++||..|....+
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~ 54 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNEL 54 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEE
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhCCee
Confidence 34568999999997544333444699999999987653
No 143
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.19 E-value=19 Score=26.82 Aligned_cols=43 Identities=19% Similarity=0.359 Sum_probs=31.5
Q ss_pred CCccccccccccccccceeecCCCCceeeCCchhhhhccCCCCCcccccccCC
Q 038034 113 EGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGHASCPLCRYKFDGR 165 (422)
Q Consensus 113 e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~l~~~ 165 (422)
....|+-|-..+...+.+... -+..||..| ..|-.|..++...
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~~ 52 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNS--NGELYHEQC--------FVCAQCFQQFPEG 52 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEE--TTEEECTTT--------CCCTTTCCCCGGG
T ss_pred CCCCchhcCCccCCCceEEEe--CccEecccc--------CeECCCCCCCCCC
Confidence 456899999998765554322 578999999 5688898877643
No 144
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.51 E-value=22 Score=26.49 Aligned_cols=41 Identities=15% Similarity=0.246 Sum_probs=31.9
Q ss_pred CCccccccccccccccceeecCCCCceeeCCchhhhhccCCCCCcccccccC
Q 038034 113 EGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGHASCPLCRYKFDG 164 (422)
Q Consensus 113 e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~l~~ 164 (422)
....|+.|-..+..++.+.. -+..||..| ..|..|..+|..
T Consensus 8 ~~~~C~~C~~~I~~~~~v~a---~~~~~H~~C--------F~C~~C~~~L~~ 48 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAEKVSS---LGKDWHKFC--------LKCERCSKTLTP 48 (76)
T ss_dssp CCCBCTTTCCBCCTTTEEEE---TTEEEETTT--------CBCSSSCCBCCT
T ss_pred CCCCCcCCCCEeECCeEEEE---CCeEeeCCC--------CCCCCCCCccCC
Confidence 34689999999887665542 578999999 568999888764
No 145
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=44.49 E-value=54 Score=23.14 Aligned_cols=28 Identities=25% Similarity=0.128 Sum_probs=13.3
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 038034 33 PLHPNIAVVIGVLSIAFSLLFLVLAYAK 60 (422)
Q Consensus 33 ~~~p~i~III~Il~iiflL~~ill~~~r 60 (422)
+.....+.+++=+++++++.+++++|.|
T Consensus 8 ~~~aIA~gVVgGv~~v~ii~~~~~~~~R 35 (44)
T 2l2t_A 8 RTPLIAAGVIGGLFILVIVGLTFAVYVR 35 (44)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcceEEEeehHHHHHHHHHHHHHHHHhh
Confidence 3444555666534444444444444443
No 146
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=44.19 E-value=11 Score=31.90 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=26.7
Q ss_pred CCccccccccccccccceeecCCCCceeeCCchhhh
Q 038034 113 EGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQW 148 (422)
Q Consensus 113 e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~W 148 (422)
+...|.+|...|..-..--....||++||..|....
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 446899999999754333344469999999997765
No 147
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=44.05 E-value=9.5 Score=30.52 Aligned_cols=50 Identities=20% Similarity=0.297 Sum_probs=33.7
Q ss_pred CCccccccccccccccceeecCCCCceeeCCchhhhhcc------CCCCCcccccc
Q 038034 113 EGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEG------HASCPLCRYKF 162 (422)
Q Consensus 113 e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~------~~sCPlCR~~l 162 (422)
+...|.+|...|..-..--....||++||..|...+... ...|-.|-..+
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l 74 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETI 74 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHH
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHH
Confidence 446899999998754433344469999999998876521 23466665444
No 148
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=43.32 E-value=19 Score=24.30 Aligned_cols=13 Identities=38% Similarity=0.294 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 038034 40 VVIGVLSIAFSLL 52 (422)
Q Consensus 40 III~Il~iiflL~ 52 (422)
|+++++..+.++.
T Consensus 15 I~~~vv~Gv~ll~ 27 (41)
T 2k9y_A 15 VIGGVAVGVVLLL 27 (41)
T ss_dssp HHHHHHHHHHHHH
T ss_pred EEeehhHHHHHHH
Confidence 3444443333333
No 149
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=43.09 E-value=6.8 Score=30.95 Aligned_cols=30 Identities=33% Similarity=0.738 Sum_probs=21.3
Q ss_pred eecCCCCceeeCCchhhhhccCC--CCCcccc
Q 038034 131 RLLPKCRHAFHMSCIDQWLEGHA--SCPLCRY 160 (422)
Q Consensus 131 r~Lp~C~H~FH~~CI~~WL~~~~--sCPlCR~ 160 (422)
...|.|++.||..|-..|=..|. +|..-+.
T Consensus 44 v~C~~C~~~FC~~C~~~w~~~H~~~sC~~~~~ 75 (86)
T 2ct7_A 44 ATCPQCHQTFCVRCKRQWEEQHRGRSCEDFQN 75 (86)
T ss_dssp EECTTTCCEECSSSCSBCCTTTTTSCHHHHHH
T ss_pred eEeCCCCCccccccCCchhhcCCCCChHHHHH
Confidence 45667999999999999954443 4654443
No 150
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=43.01 E-value=16 Score=31.57 Aligned_cols=49 Identities=10% Similarity=0.150 Sum_probs=32.6
Q ss_pred CCCccccccccccc-cccceeecCCCCceeeCCchhhhhcc----CCCCCcccc
Q 038034 112 KEGLECAVYLSKFE-DTEILRLLPKCRHAFHMSCIDQWLEG----HASCPLCRY 160 (422)
Q Consensus 112 ~e~~~CsICLe~f~-~~~~~r~Lp~C~H~FH~~CI~~WL~~----~~sCPlCR~ 160 (422)
.+...|.+|...|. ....-.....|.|.+|..|=..-... .-.|-+|+.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLE 106 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHH
Confidence 35678999999993 33333455569999999996532111 113888876
No 151
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.72 E-value=27 Score=26.28 Aligned_cols=41 Identities=12% Similarity=0.279 Sum_probs=30.8
Q ss_pred CccccccccccccccceeecCCCCceeeCCchhhhhccCCCCCcccccccC
Q 038034 114 GLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGHASCPLCRYKFDG 164 (422)
Q Consensus 114 ~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~l~~ 164 (422)
...|+.|-..+..++.+... -+..||..| ..|-.|..+|..
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~ 55 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVEY--KGTVWHKDC--------FTCSNCKQVIGT 55 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEEC--SSCEEETTT--------CCCSSSCCCCTT
T ss_pred CCcCccCCcccccCceEEEE--Ccccccccc--------CchhhCCCccCC
Confidence 35899999998876654322 578999999 568899887764
No 152
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=42.41 E-value=17 Score=28.56 Aligned_cols=38 Identities=13% Similarity=0.155 Sum_probs=27.9
Q ss_pred CCCccccccccccccccceeecCCCCceeeCCchhhhh
Q 038034 112 KEGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWL 149 (422)
Q Consensus 112 ~e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL 149 (422)
.+...|.+|...|..-..--....||++||..|.....
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~ 56 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRA 56 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCEE
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCCeE
Confidence 34568999999997644333344699999999987653
No 153
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=41.99 E-value=12 Score=27.91 Aligned_cols=45 Identities=27% Similarity=0.429 Sum_probs=27.4
Q ss_pred CCccccccccccccccceeecCC--CC-ceeeCCchhhhh--ccCCCCCcccc
Q 038034 113 EGLECAVYLSKFEDTEILRLLPK--CR-HAFHMSCIDQWL--EGHASCPLCRY 160 (422)
Q Consensus 113 e~~~CsICLe~f~~~~~~r~Lp~--C~-H~FH~~CI~~WL--~~~~sCPlCR~ 160 (422)
+..-| ||.... .+ .+...-. |. ..||..|+.-=- ...-.||.|+.
T Consensus 10 e~~yC-~C~~~~-~g-~MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 10 EPTYC-LCNQVS-YG-EMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CCEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHT
T ss_pred CCcEE-ECCCCC-CC-CeeeeeCCCCCcccEecccCCcCcCCCCCEECcCccc
Confidence 34566 898763 23 3444445 44 899999997211 12446999965
No 154
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=41.59 E-value=16 Score=27.97 Aligned_cols=34 Identities=15% Similarity=0.141 Sum_probs=25.3
Q ss_pred ccccccccccccccceeecCCCCceeeCCchhhh
Q 038034 115 LECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQW 148 (422)
Q Consensus 115 ~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~W 148 (422)
..|.+|...|..-..--....||++|+..|....
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~ 45 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNS 45 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCCe
Confidence 5899999998754333334469999999997654
No 155
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=41.49 E-value=15 Score=29.70 Aligned_cols=46 Identities=17% Similarity=0.299 Sum_probs=27.8
Q ss_pred CCCccccccccccccccceeecCCCC---ceeeCCchhhhh--ccCCCCCc-ccc
Q 038034 112 KEGLECAVYLSKFEDTEILRLLPKCR---HAFHMSCIDQWL--EGHASCPL-CRY 160 (422)
Q Consensus 112 ~e~~~CsICLe~f~~~~~~r~Lp~C~---H~FH~~CI~~WL--~~~~sCPl-CR~ 160 (422)
.+..-| ||-.... ++ ++..-.|. ..||..|+.-=- ...-.||. |+.
T Consensus 24 ~~~~yC-iC~~~~~-g~-MI~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 24 QEEVYC-FCRNVSY-GP-MVACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CCSCCS-TTTCCCS-SS-EECCCSSSCSCSCEETTTSSCSSCTTSCCCSSHHHHH
T ss_pred CCCcEE-EeCCCCC-CC-EEEecCCCCccccCcCccCCCCcCCCCCccCChhhcc
Confidence 344567 8987532 33 44444554 689999986211 12456999 974
No 156
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=40.99 E-value=6.2 Score=30.89 Aligned_cols=14 Identities=29% Similarity=0.759 Sum_probs=13.3
Q ss_pred CCCceeeCCchhhh
Q 038034 135 KCRHAFHMSCIDQW 148 (422)
Q Consensus 135 ~C~H~FH~~CI~~W 148 (422)
+|+|.||..|-..|
T Consensus 55 ~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 55 GCGFAFCRECKEAY 68 (80)
T ss_dssp CCSCCEETTTTEEC
T ss_pred CCCCeeccccCccc
Confidence 69999999999999
No 157
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=40.39 E-value=33 Score=24.00 Aligned_cols=26 Identities=42% Similarity=0.428 Sum_probs=15.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 038034 36 PNIAVVIGVLSIAFSLLFLVLAYAKF 61 (422)
Q Consensus 36 p~i~III~Il~iiflL~~ill~~~r~ 61 (422)
|.-+|+++++..++++.+++++..++
T Consensus 9 p~wiIi~s~l~GLllL~li~~~LwK~ 34 (42)
T 2k1a_A 9 PIWWVLVGVLGGLLLLTILVLAMWKV 34 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44556666666666666666555553
No 158
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=39.87 E-value=14 Score=26.37 Aligned_cols=41 Identities=20% Similarity=0.357 Sum_probs=26.6
Q ss_pred ccccccccccceeecCCCCceeeCCchhhhh---ccCCCCCcccc
Q 038034 119 VYLSKFEDTEILRLLPKCRHAFHMSCIDQWL---EGHASCPLCRY 160 (422)
Q Consensus 119 ICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL---~~~~sCPlCR~ 160 (422)
||..... +...+..-.|..-||..|+.--- ...-.||.|+.
T Consensus 8 ~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCC-CCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 6766554 33344444599999999986432 23557999874
No 159
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.73 E-value=20 Score=28.08 Aligned_cols=37 Identities=16% Similarity=0.221 Sum_probs=25.9
Q ss_pred CCCccccccccccccccceeecCCCCceeeCCchhhh
Q 038034 112 KEGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQW 148 (422)
Q Consensus 112 ~e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~W 148 (422)
.+...|.+|...|..-..--....||.+||..|....
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEE
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCCc
Confidence 3446899999998654322233459999999996653
No 160
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.18 E-value=29 Score=26.55 Aligned_cols=43 Identities=28% Similarity=0.363 Sum_probs=31.8
Q ss_pred CCCccccccccccccccceeecCCCCceeeCCchhhhhccCCCCCcccccccCC
Q 038034 112 KEGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGHASCPLCRYKFDGR 165 (422)
Q Consensus 112 ~e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~l~~~ 165 (422)
.....|+.|-..+...+.+.. -+..||..| ..|-.|...|...
T Consensus 13 ~~~~~C~~C~~~I~~~e~v~a---~~~~wH~~C--------F~C~~C~~~L~~~ 55 (82)
T 2co8_A 13 GAGDLCALCGEHLYVLERLCV---NGHFFHRSC--------FRCHTCEATLWPG 55 (82)
T ss_dssp CSSCBCSSSCCBCCTTTBCCB---TTBCCBTTT--------CBCSSSCCBCCTT
T ss_pred CCCCCCcccCCCcccceEEEE---CCCeeCCCc--------CEEcCCCCCcCCC
Confidence 345689999998876665532 578899999 5688888877654
No 161
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=38.81 E-value=5.2 Score=26.88 Aligned_cols=19 Identities=21% Similarity=0.504 Sum_probs=13.3
Q ss_pred CCCccccccccccccccce
Q 038034 112 KEGLECAVYLSKFEDTEIL 130 (422)
Q Consensus 112 ~e~~~CsICLe~f~~~~~~ 130 (422)
.++..|+||+..+...+.+
T Consensus 3 ~EGFiCP~C~~~l~s~~~L 21 (34)
T 3mjh_B 3 SEGFICPQCMKSLGSADEL 21 (34)
T ss_dssp SEEEECTTTCCEESSHHHH
T ss_pred CcccCCcHHHHHcCCHHHH
Confidence 4567899998887765443
No 162
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=38.54 E-value=7.6 Score=40.47 Aligned_cols=48 Identities=21% Similarity=0.405 Sum_probs=32.5
Q ss_pred CccccccccccccccceeecCCCCceeeCCchhhhhc-----cCCCCCcccccc
Q 038034 114 GLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLE-----GHASCPLCRYKF 162 (422)
Q Consensus 114 ~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~-----~~~sCPlCR~~l 162 (422)
...| ||...+..+...+.+-.|.--||..|+.---. ..-.||.|+...
T Consensus 37 ~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 37 PVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLH 89 (488)
T ss_dssp CEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHH
T ss_pred CeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCCc
Confidence 3445 99887754454555556999999999854222 245799998644
No 163
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=37.17 E-value=23 Score=25.66 Aligned_cols=43 Identities=19% Similarity=0.384 Sum_probs=31.5
Q ss_pred CCccccccccccccccceeecCCCCceeeCCchhhhhccCCCCCcccccccCC
Q 038034 113 EGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGHASCPLCRYKFDGR 165 (422)
Q Consensus 113 e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~l~~~ 165 (422)
....|+-|-..+...+.+... -+..||..|. .|-.|..++...
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~~--~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEEE--TTEEEETTTS--------SCTTTCCCCGGG
T ss_pred CCccchhcCccccCCceEEEe--CcCeeCcCCC--------cccCCCCCCCCC
Confidence 345899999998876654322 5788999994 688888877643
No 164
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=36.67 E-value=9.7 Score=33.69 Aligned_cols=47 Identities=19% Similarity=0.294 Sum_probs=31.2
Q ss_pred CCccccccccccccc-cceeecCCCCceeeCCchhhhhccCC--CCCcccc
Q 038034 113 EGLECAVYLSKFEDT-EILRLLPKCRHAFHMSCIDQWLEGHA--SCPLCRY 160 (422)
Q Consensus 113 e~~~CsICLe~f~~~-~~~r~Lp~C~H~FH~~CI~~WL~~~~--sCPlCR~ 160 (422)
++..|++|...|.-- ..-.....|.|.+|..|= .|+.... .|-+|+.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHH
Confidence 567999999987422 223344469999999996 3544322 3878865
No 165
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.44 E-value=29 Score=26.44 Aligned_cols=40 Identities=20% Similarity=0.407 Sum_probs=31.2
Q ss_pred CCccccccccccccccceeecCCCCceeeCCchhhhhccCCCCCccccccc
Q 038034 113 EGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGHASCPLCRYKFD 163 (422)
Q Consensus 113 e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~l~ 163 (422)
....|+-|-..+.+++.+.. -+..||..| ..|-.|+.+|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA---LDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE---TTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE---CCccccccc--------CCcCcCCCCcC
Confidence 45689999999887665543 468999999 66889988775
No 166
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=35.88 E-value=8.6 Score=28.86 Aligned_cols=42 Identities=24% Similarity=0.627 Sum_probs=29.4
Q ss_pred ccccccccccccccceeecCCCCceeeCCchhhhh-ccCCCCCcc
Q 038034 115 LECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWL-EGHASCPLC 158 (422)
Q Consensus 115 ~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL-~~~~sCPlC 158 (422)
..|-.|...|.+... ...++|++.|+.+| |..+ ..-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~-y~C~~C~~~FC~dC-D~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHV-YVCAVCQNVFCVDC-DVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEE-ECCTTTTCCBCHHH-HHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCcc-EECCccCcCcccch-hHHHHhhccCCcCC
Confidence 459999999864332 34667999999999 3333 234579988
No 167
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=35.84 E-value=7.7 Score=38.67 Aligned_cols=37 Identities=14% Similarity=0.102 Sum_probs=0.0
Q ss_pred CCccccccccccccccceeecCCCCceeeCCchhhhh
Q 038034 113 EGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWL 149 (422)
Q Consensus 113 e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL 149 (422)
+...|.+|...|..-..-.....||++||..|...++
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~ 410 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKY 410 (434)
T ss_dssp -------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCee
Confidence 4568999999987543323344599999999987664
No 168
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=34.96 E-value=51 Score=23.31 Aligned_cols=31 Identities=10% Similarity=0.303 Sum_probs=15.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 038034 35 HPNIAVVIGVLSIAFSLLFLVLAYAKFCQSNH 66 (422)
Q Consensus 35 ~p~i~III~Il~iiflL~~ill~~~r~c~r~~ 66 (422)
.+...|+.+++. ++++.++.+.+..|.+|++
T Consensus 9 ~~~~~Ia~~vVG-vll~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 9 SPLTSIISAVVG-ILLVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp CSHHHHHHHHHH-HHHHHHHHHHHHHHHHHHC
T ss_pred CcccchHHHHHH-HHHHHHHHHHHHhheehhh
Confidence 345556666665 4444444444444555444
No 169
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=33.84 E-value=1.1e+02 Score=24.03 Aligned_cols=16 Identities=13% Similarity=0.154 Sum_probs=8.1
Q ss_pred HHHHHHHHHHhcccCC
Q 038034 52 LFLVLAYAKFCQSNHS 67 (422)
Q Consensus 52 ~~ill~~~r~c~r~~~ 67 (422)
.+-.+++..||.-+.+
T Consensus 26 alg~li~gcwcylrlq 41 (90)
T 1zza_A 26 ALGALILGCWCYLRLQ 41 (90)
T ss_dssp HHHHHHHHHHTTTSSC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334445556665553
No 170
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=33.68 E-value=23 Score=26.78 Aligned_cols=41 Identities=24% Similarity=0.502 Sum_probs=30.5
Q ss_pred CccccccccccccccceeecCCCCceeeCCchhhhhccCCCCCcccccccCC
Q 038034 114 GLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGHASCPLCRYKFDGR 165 (422)
Q Consensus 114 ~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~l~~~ 165 (422)
...|+.|-..+.+++.+.. -+..||..| ..|-.|..+|...
T Consensus 7 ~~~C~~C~~~I~~~~~~~a---~~~~~H~~C--------F~C~~C~~~L~~~ 47 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQC---DGRSFHRCC--------FLCMVCRKNLDST 47 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEE---TTEEEESSS--------EECSSSCCEECSS
T ss_pred CCcCcCcCccccCceeEEe---CCccccccc--------CccCCCCCCCCCC
Confidence 4589999999877665432 678999999 4588898877653
No 171
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.37 E-value=38 Score=25.23 Aligned_cols=40 Identities=13% Similarity=0.261 Sum_probs=28.7
Q ss_pred Ccccccccccccc--ccceeecCCCCceeeCCchhhhhccCCCCCccccccc
Q 038034 114 GLECAVYLSKFED--TEILRLLPKCRHAFHMSCIDQWLEGHASCPLCRYKFD 163 (422)
Q Consensus 114 ~~~CsICLe~f~~--~~~~r~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~l~ 163 (422)
...|+.|-..+.+ ..... .. -+..||..| ..|-.|..+|.
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~-~a-~~~~wH~~C--------F~C~~C~~~L~ 46 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFI-CF-QDSQWHSEC--------FNCGKCSVSLV 46 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEE-EE-TTEEEEGGG--------CBCTTTCCBCS
T ss_pred CCCCccCCCcccCCCCceeE-EE-CCcccCccc--------CChhhCCCcCC
Confidence 3579999998875 33332 22 678999999 56888988775
No 172
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=33.10 E-value=28 Score=27.97 Aligned_cols=40 Identities=20% Similarity=0.410 Sum_probs=29.7
Q ss_pred CCCccccccccccccccceeecCCCCceeeCCchhhhhcc
Q 038034 112 KEGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEG 151 (422)
Q Consensus 112 ~e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~ 151 (422)
.....|.+|.+.+++..-+..-..=.|.||..|-...++.
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 3456899999999986655322223699999999988864
No 173
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.04 E-value=47 Score=24.10 Aligned_cols=39 Identities=18% Similarity=0.419 Sum_probs=28.8
Q ss_pred CccccccccccccccceeecCCCCceeeCCchhhhhccCCCCCcccccccC
Q 038034 114 GLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGHASCPLCRYKFDG 164 (422)
Q Consensus 114 ~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~l~~ 164 (422)
...|+.|-..+.. +.+ .. -+..||..| ..|-.|..+|..
T Consensus 5 ~~~C~~C~~~I~~-~~~--~a-~~~~~H~~C--------F~C~~C~~~L~~ 43 (70)
T 2d8z_A 5 SSGCVQCKKPITT-GGV--TY-REQPWHKEC--------FVCTACRKQLSG 43 (70)
T ss_dssp CCBCSSSCCBCCS-SEE--ES-SSSEEETTT--------SBCSSSCCBCTT
T ss_pred CCCCcccCCeecc-ceE--EE-CccccCCCC--------CccCCCCCcCCc
Confidence 4579999998874 333 22 678999999 568899888753
No 174
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.21 E-value=41 Score=26.01 Aligned_cols=42 Identities=24% Similarity=0.426 Sum_probs=31.8
Q ss_pred CCccccccccccccccceeecCCCCceeeCCchhhhhccCCCCCcccccccCC
Q 038034 113 EGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGHASCPLCRYKFDGR 165 (422)
Q Consensus 113 e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~l~~~ 165 (422)
....|+-|-..+...+.+. . -+..||..| ..|-.|..+|...
T Consensus 14 ~~~~C~~C~~~I~~~~~v~--a-~~~~~H~~C--------F~C~~C~~~L~~~ 55 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERLL--A-NQQVFHISC--------FRCSYCNNKLSLG 55 (91)
T ss_dssp SSCBCTTTCCBCCTTSEEE--C-SSSEEETTT--------CBCTTTCCBCCTT
T ss_pred CCCcCccCCCccCCceeEE--E-CCCEECCCC--------CeeCCCCCCCCCC
Confidence 3468999999988766543 3 678999999 5588888877654
No 175
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.84 E-value=46 Score=24.18 Aligned_cols=41 Identities=15% Similarity=0.379 Sum_probs=29.6
Q ss_pred CCccccccccccccccceeecCCCCceeeCCchhhhhccCCCCCcccccccCC
Q 038034 113 EGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGHASCPLCRYKFDGR 165 (422)
Q Consensus 113 e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~l~~~ 165 (422)
....|+.|-..+.+ ..+. . -+..||.+| ..|-.|..+|...
T Consensus 4 ~~~~C~~C~~~I~~-~~~~--a-~~~~~H~~C--------F~C~~C~~~L~~~ 44 (70)
T 2d8x_A 4 GSSGCHQCGEFIIG-RVIK--A-MNNSWHPEC--------FRCDLCQEVLADI 44 (70)
T ss_dssp CSSBCSSSCCBCCS-CCEE--E-TTEEECTTT--------SBCSSSCCBCSSS
T ss_pred CCCcCccCCCEecc-eEEE--E-CcccccccC--------CEeCCCCCcCCCC
Confidence 34689999988873 3332 2 578999999 5688898877654
No 176
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=31.58 E-value=23 Score=29.27 Aligned_cols=37 Identities=22% Similarity=0.545 Sum_probs=24.3
Q ss_pred cccccccccccccceeecCCCCceeeCCchhhhhccCCCCCcccccc
Q 038034 116 ECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGHASCPLCRYKF 162 (422)
Q Consensus 116 ~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~l 162 (422)
.|+.|-..+...+.+... -++.||..| ..|-.|...|
T Consensus 10 ~C~~C~~~I~~~e~~~~a--~~~~~H~~C--------F~C~~C~~~L 46 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMRV--KDKVYHLEC--------FKCAACQKHF 46 (123)
T ss_dssp CCSSSSCCCCTTCCCCCC--SSCCCCTTT--------CBCTTTCCBC
T ss_pred cccCCCCeecCCceEEEE--CCccccccc--------CccccCCCCC
Confidence 688888887765443222 467888888 4466666655
No 177
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=30.48 E-value=29 Score=28.30 Aligned_cols=51 Identities=20% Similarity=0.505 Sum_probs=34.4
Q ss_pred CCccccccccccccc---cceeecCCCCceeeCCchhhhh-ccCCCCCccccccc
Q 038034 113 EGLECAVYLSKFEDT---EILRLLPKCRHAFHMSCIDQWL-EGHASCPLCRYKFD 163 (422)
Q Consensus 113 e~~~CsICLe~f~~~---~~~r~Lp~C~H~FH~~CI~~WL-~~~~sCPlCR~~l~ 163 (422)
....|.||-+++... +...-.-.|+--.|..|.+-=. ..+..||-|+..+.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 456899999986432 3222223467777888876543 35888999998776
No 178
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=29.81 E-value=61 Score=25.23 Aligned_cols=40 Identities=13% Similarity=0.219 Sum_probs=25.8
Q ss_pred CccccccccccccccceeecCCCCceeeCCchhhhhccCCCCCccccccc
Q 038034 114 GLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGHASCPLCRYKFD 163 (422)
Q Consensus 114 ~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~l~ 163 (422)
...|+.|-..+..+..+... -+..||..| ..|-.|..+|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~ 44 (101)
T 2cup_A 5 SSGCVECRKPIGADSKEVHY--KNRFWHDTC--------FRCAKCLHPLA 44 (101)
T ss_dssp CCBCSSSCCBCCSSSCEEEE--TTEEEETTT--------CCCSSSCCCTT
T ss_pred CCcCcccCCcccCCceEEEE--CccChhhcC--------CcccccCCCCC
Confidence 45788888887643333222 467888888 45777777664
No 179
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=28.47 E-value=55 Score=23.45 Aligned_cols=39 Identities=18% Similarity=0.345 Sum_probs=29.0
Q ss_pred CccccccccccccccceeecCCCCceeeCCchhhhhccCCCCCcccccccC
Q 038034 114 GLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGHASCPLCRYKFDG 164 (422)
Q Consensus 114 ~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~l~~ 164 (422)
...|+.|-..+. ++.+ .. -+..||..| -.|-.|..++..
T Consensus 5 ~~~C~~C~~~I~-~~~~--~a-~~~~~H~~C--------F~C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRRPIE-GRVV--NA-MGKQWHVEH--------FVCAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTEECC-SCEE--CC-TTSBEETTT--------CBCTTTCCBCSS
T ss_pred CCCCcccCCEec-ceEE--EE-CccccccCc--------CEECCCCCCCCC
Confidence 457999999887 3332 33 578999999 568899888764
No 180
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=27.40 E-value=47 Score=24.56 Aligned_cols=41 Identities=15% Similarity=0.291 Sum_probs=29.3
Q ss_pred Ccccccccccccc---ccceeecCCCCceeeCCchhhhhccCCCCCcccccccC
Q 038034 114 GLECAVYLSKFED---TEILRLLPKCRHAFHMSCIDQWLEGHASCPLCRYKFDG 164 (422)
Q Consensus 114 ~~~CsICLe~f~~---~~~~r~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~l~~ 164 (422)
...|+-|-..+.. ...... . -+..||..| ..|-.|..+|..
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~-a-~~~~~H~~C--------F~C~~C~~~L~~ 58 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVA-Y-EGQSWHDYC--------FHCKKCSVNLAN 58 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEE-E-TTEEEETTT--------CBCSSSCCBCTT
T ss_pred CccCcccCCcccCCCCCceeEE-E-CcceeCccc--------CEehhcCCCCCC
Confidence 3579999998875 323322 2 578999999 568999888764
No 181
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.06 E-value=49 Score=24.81 Aligned_cols=39 Identities=13% Similarity=0.163 Sum_probs=29.0
Q ss_pred CCccccccccccccccceeecCCCCceeeCCchhhhhccCCCCCccccccc
Q 038034 113 EGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGHASCPLCRYKFD 163 (422)
Q Consensus 113 e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~l~ 163 (422)
....|+-|-..+.. +.+ .. -+..||..| ..|-.|...|.
T Consensus 14 ~~~~C~~C~~~I~~-~~~--~a-~~~~~H~~C--------F~C~~C~~~L~ 52 (79)
T 1x62_A 14 KLPMCDKCGTGIVG-VFV--KL-RDRHRHPEC--------YVCTDCGTNLK 52 (79)
T ss_dssp CCCCCSSSCCCCCS-SCE--EC-SSCEECTTT--------TSCSSSCCCHH
T ss_pred CCCccccCCCCccC-cEE--EE-CcceeCcCc--------CeeCCCCCCCC
Confidence 34689999998875 322 22 678999999 56889988775
No 182
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=26.93 E-value=68 Score=24.60 Aligned_cols=41 Identities=15% Similarity=0.238 Sum_probs=30.1
Q ss_pred CCccccccccccccccceeecCCCCceeeCCchhhhhccCCCCCcccccccCC
Q 038034 113 EGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGHASCPLCRYKFDGR 165 (422)
Q Consensus 113 e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~l~~~ 165 (422)
....|+-|-..+.. ..+ .. -+..||..| ..|-.|...|...
T Consensus 24 ~~~~C~~C~~~I~~-~~~--~a-~~~~~H~~C--------F~C~~C~~~L~~~ 64 (89)
T 1x64_A 24 RMPLCDKCGSGIVG-AVV--KA-RDKYRHPEC--------FVCADCNLNLKQK 64 (89)
T ss_dssp SCCBCTTTCCBCCS-CCE--ES-SSCEECTTT--------CCCSSSCCCTTTS
T ss_pred cCCCcccCCCEecc-cEE--EE-CCceECccC--------CEecCCCCCCCCC
Confidence 44689999998875 322 22 678999999 5688998877643
No 183
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=26.64 E-value=19 Score=36.31 Aligned_cols=47 Identities=21% Similarity=0.639 Sum_probs=30.3
Q ss_pred ccccccccccccccceeecCCCCceeeCCchhh--hhc-----cCCCCCcccccccCCCC
Q 038034 115 LECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQ--WLE-----GHASCPLCRYKFDGRDR 167 (422)
Q Consensus 115 ~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~--WL~-----~~~sCPlCR~~l~~~~~ 167 (422)
..|++-...+.. .++-.. |.|. .|.|. ||. ..-.||+|.+.+...++
T Consensus 250 L~CPlS~~ri~~--PvRg~~-C~Hl---QCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL 303 (371)
T 3i2d_A 250 LQCPISYTRMKY--PSKSIN-CKHL---QCFDALWFLHSQLQIPTWQCPVCQIDIALENL 303 (371)
T ss_dssp SBCTTTSSBCSS--EEEETT-CCSS---CCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGE
T ss_pred ecCCCccccccc--cCcCCc-CCCc---ceECHHHHHHHhhcCCceeCCCCCcccCHHHe
Confidence 578887777655 344454 9887 45443 443 24569999988766554
No 184
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.47 E-value=48 Score=24.91 Aligned_cols=41 Identities=17% Similarity=0.302 Sum_probs=28.5
Q ss_pred CccccccccccccccceeecCCCCceeeCCchhhhhccCCCCCcccccccC
Q 038034 114 GLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGHASCPLCRYKFDG 164 (422)
Q Consensus 114 ~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~l~~ 164 (422)
...|+.|-..+..++.+... -+..||..| ..|-.|..+|..
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~ 55 (82)
T 2ehe_A 15 ANTCAECQQLIGHDSRELFY--EDRHFHEGC--------FRCCRCQRSLAD 55 (82)
T ss_dssp SCBCTTTCCBCCSSCCBCCC--SSCCCBTTT--------SBCTTTCCBCSS
T ss_pred CCcCccCCCccccCcEEEEe--CCccccccC--------CeecCCCCccCC
Confidence 34799999988743433221 478899988 568889887753
No 185
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=26.25 E-value=28 Score=29.04 Aligned_cols=24 Identities=25% Similarity=0.639 Sum_probs=16.2
Q ss_pred CCCceeeCCchhhhhccCCCCCccccccc
Q 038034 135 KCRHAFHMSCIDQWLEGHASCPLCRYKFD 163 (422)
Q Consensus 135 ~C~H~FH~~CI~~WL~~~~sCPlCR~~l~ 163 (422)
+||+.| ..=+.....||.|+..-.
T Consensus 72 ~CG~~F-----~~~~~kPsrCP~CkSe~I 95 (105)
T 2gmg_A 72 KCGFVF-----KAEINIPSRCPKCKSEWI 95 (105)
T ss_dssp TTCCBC-----CCCSSCCSSCSSSCCCCB
T ss_pred hCcCee-----cccCCCCCCCcCCCCCcc
Confidence 499999 122345678999987543
No 186
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=26.04 E-value=42 Score=27.96 Aligned_cols=39 Identities=23% Similarity=0.411 Sum_probs=29.7
Q ss_pred CccccccccccccccceeecCCCCceeeCCchhhhhccCCCCCccccccc
Q 038034 114 GLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGHASCPLCRYKFD 163 (422)
Q Consensus 114 ~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~l~ 163 (422)
...|+-|-..+.....+.. -+..||..| ..|-.|..+|.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYA---MDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEE---TTEEEETTT--------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEe---CCcEEcccc--------cCcCcCCCccc
Confidence 3589999998875433332 678999999 67999998886
No 187
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=25.39 E-value=15 Score=37.80 Aligned_cols=49 Identities=20% Similarity=0.325 Sum_probs=33.4
Q ss_pred cccccccccccccceeecCCCCceeeCCchhhhhc-----cCCCCCcccccccC
Q 038034 116 ECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLE-----GHASCPLCRYKFDG 164 (422)
Q Consensus 116 ~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~-----~~~sCPlCR~~l~~ 164 (422)
.+.||...+..+...+.+-.|.--||..|+.---. ..-.||.|+....+
T Consensus 6 ~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~~~ 59 (447)
T 3kv4_A 6 VYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHGP 59 (447)
T ss_dssp EETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHHCC
T ss_pred eEEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCccccCC
Confidence 45589887754455555556999999999853221 34679999875544
No 188
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=24.95 E-value=22 Score=35.73 Aligned_cols=47 Identities=26% Similarity=0.516 Sum_probs=30.1
Q ss_pred ccccccccccccccceeecCCCCceeeCCchh--hhhc-----cCCCCCcccccccCCCC
Q 038034 115 LECAVYLSKFEDTEILRLLPKCRHAFHMSCID--QWLE-----GHASCPLCRYKFDGRDR 167 (422)
Q Consensus 115 ~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~--~WL~-----~~~sCPlCR~~l~~~~~ 167 (422)
..|++-...+..+ ++-.. |.|. .|.| .||. ..-.||+|.+.+...+.
T Consensus 216 L~CPlS~~ri~~P--~Rg~~-C~Hl---qCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL 269 (360)
T 4fo9_A 216 LMCPLGKMRLTIP--CRAVT-CTHL---QCFDAALYLQMNEKKPTWICPVCDKKAAYESL 269 (360)
T ss_dssp SBCTTTCSBCSSE--EEETT-CCCC---CCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGE
T ss_pred eeCCCccceeccC--CcCCC-CCCC---ccCCHHHHHHHHhhCCCeECCCCCcccCHHHe
Confidence 4788877776553 44454 9887 4533 3443 24569999988766544
No 189
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=24.84 E-value=23 Score=34.70 Aligned_cols=49 Identities=16% Similarity=0.201 Sum_probs=33.1
Q ss_pred CCCccccccccccccccceee---cCCCCceeeCCchhhhhccCCCCCccccc
Q 038034 112 KEGLECAVYLSKFEDTEILRL---LPKCRHAFHMSCIDQWLEGHASCPLCRYK 161 (422)
Q Consensus 112 ~e~~~CsICLe~f~~~~~~r~---Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~ 161 (422)
.....|+||-..-... .++. -.+=.|.+|.-|=..|--....||.|-..
T Consensus 180 ~~~~~CPvCGs~P~~s-~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAG-MIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEE-EEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCcee-EEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 3456899998875433 1211 01123677888999998888999999764
No 190
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.62 E-value=64 Score=24.15 Aligned_cols=38 Identities=24% Similarity=0.543 Sum_probs=27.9
Q ss_pred ccccccccccccccceeecCCCCceeeCCchhhhhccCCCCCcccccccC
Q 038034 115 LECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGHASCPLCRYKFDG 164 (422)
Q Consensus 115 ~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~l~~ 164 (422)
..|+.|-..+. ++.+. . -+..||..| ..|-.|..+|..
T Consensus 16 ~~C~~C~~~I~-~~~v~--a-~~~~wH~~C--------F~C~~C~~~L~~ 53 (81)
T 1v6g_A 16 TRCFSCDQFIE-GEVVS--A-LGKTYHPDC--------FVCAVCRLPFPP 53 (81)
T ss_dssp CBCTTTCCBCC-SCCEE--E-TTEEECTTT--------SSCSSSCCCCCS
T ss_pred CcCccccCEec-cceEE--E-CCceeCccC--------CccccCCCCCCC
Confidence 47999999887 33332 2 578999999 568888887764
No 191
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=23.82 E-value=22 Score=29.09 Aligned_cols=45 Identities=22% Similarity=0.268 Sum_probs=27.4
Q ss_pred cccccccccccccceeecCCCCceeeCCchhhhhcc--------CCCCCcccc
Q 038034 116 ECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEG--------HASCPLCRY 160 (422)
Q Consensus 116 ~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~--------~~sCPlCR~ 160 (422)
.|..|......+..+.....|...||..|+...... ...||.|+.
T Consensus 61 ~c~~c~~~~~~~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~ 113 (117)
T 4bbq_A 61 EVDQNEETQDFEKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQ 113 (117)
T ss_dssp CBCCHHHHCCGGGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC-
T ss_pred cccccccccccCcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcC
Confidence 444554444444445445569999999998754321 134999964
No 192
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=23.78 E-value=31 Score=26.09 Aligned_cols=49 Identities=20% Similarity=0.370 Sum_probs=31.4
Q ss_pred CCCCccccccccc-cccccceeecCCCCceeeCCchhhhhcc-CC---CCCcccc
Q 038034 111 SKEGLECAVYLSK-FEDTEILRLLPKCRHAFHMSCIDQWLEG-HA---SCPLCRY 160 (422)
Q Consensus 111 ~~e~~~CsICLe~-f~~~~~~r~Lp~C~H~FH~~CI~~WL~~-~~---sCPlCR~ 160 (422)
..+...|.||+.. |.++---.-. .|.-.||..|=-.|-.. +. .|-+||+
T Consensus 6 ~~d~~~C~iC~KTKFADG~Gh~C~-yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 6 KGDAPTCGICHKTKFADGCGHNCS-YCQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp SSCCCCCSSSSCSCCCSSCCEEBT-TTCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred cCCcchhhhhccceeccCCCcccc-ccCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 4567799999975 4444333333 37788888887777433 22 2777765
No 193
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.59 E-value=77 Score=23.45 Aligned_cols=38 Identities=24% Similarity=0.447 Sum_probs=27.5
Q ss_pred CccccccccccccccceeecCCCCceeeCCchhhhhccCCCCCccccccc
Q 038034 114 GLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGHASCPLCRYKFD 163 (422)
Q Consensus 114 ~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~l~ 163 (422)
...|+-|-..+.. ..+ .. -+..||.+| ..|-.|..+|.
T Consensus 5 ~~~C~~C~~~I~~-~~v--~a-~~~~wH~~C--------F~C~~C~~~L~ 42 (73)
T 1wig_A 5 SSGCDSCEKYITG-RVL--EA-GEKHYHPSC--------ALCVRCGQMFA 42 (73)
T ss_dssp CCSCSSSCCCCSS-CCB--CC-SSCCBCTTT--------SCCSSSCCCCC
T ss_pred cCCcccCCCEecC-eeE--Ee-CCCCCCCCc--------CEeCCCCCCCC
Confidence 3579999888765 222 22 678899999 56888888776
No 194
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.42 E-value=69 Score=24.11 Aligned_cols=41 Identities=12% Similarity=0.267 Sum_probs=29.9
Q ss_pred CCccccccccccccccceeecCCCCceeeCCchhhhhccCCCCCcccccccCC
Q 038034 113 EGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGHASCPLCRYKFDGR 165 (422)
Q Consensus 113 e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~l~~~ 165 (422)
....|+-|-..+. +..+ .. -+..||..| ..|-.|..+|...
T Consensus 14 ~~~~C~~C~~~I~-~~~v--~a-~~~~~H~~C--------F~C~~C~~~L~~~ 54 (79)
T 2cor_A 14 GKYICQKCHAIID-EQPL--IF-KNDPYHPDH--------FNCANCGKELTAD 54 (79)
T ss_dssp CCCBCTTTCCBCC-SCCC--CC-SSSCCCTTT--------SBCSSSCCBCCTT
T ss_pred CCCCCccCCCEec-ceEE--EE-CcceeCCCC--------CEeCCCCCccCCC
Confidence 3468999999887 3333 22 678899998 5789998887743
No 195
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.87 E-value=81 Score=24.19 Aligned_cols=40 Identities=15% Similarity=0.261 Sum_probs=29.8
Q ss_pred CCccccccccccccccceeecCCCCceeeCCchhhhhccCCCCCcccccccC
Q 038034 113 EGLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGHASCPLCRYKFDG 164 (422)
Q Consensus 113 e~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~l~~ 164 (422)
....|+.|-..+. ++.+ .. -+..||..| ..|-.|..+|..
T Consensus 24 ~~~~C~~C~~~I~-~~~v--~a-~~~~~H~~C--------F~C~~C~~~L~~ 63 (90)
T 2dar_A 24 RTPMCAHCNQVIR-GPFL--VA-LGKSWHPEE--------FNCAHCKNTMAY 63 (90)
T ss_dssp CCCBBSSSCCBCC-SCEE--EE-TTEEECTTT--------CBCSSSCCBCSS
T ss_pred CCCCCccCCCEec-ceEE--EE-CCccccccC--------CccCCCCCCCCC
Confidence 4568999999885 3333 22 679999999 678899888764
No 196
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=22.80 E-value=56 Score=25.11 Aligned_cols=32 Identities=19% Similarity=0.346 Sum_probs=24.7
Q ss_pred CCCCccccccccccccccceeecCCC-CceeeCCchhh
Q 038034 111 SKEGLECAVYLSKFEDTEILRLLPKC-RHAFHMSCIDQ 147 (422)
Q Consensus 111 ~~e~~~CsICLe~f~~~~~~r~Lp~C-~H~FH~~CI~~ 147 (422)
..+..-|.||.++ ..++.+. | +-.||..|..+
T Consensus 5 ~ee~pWC~ICneD----AtlrC~g-CdgDLYC~rC~rE 37 (67)
T 2d8v_A 5 SSGLPWCCICNED----ATLRCAG-CDGDLYCARCFRE 37 (67)
T ss_dssp CCCCSSCTTTCSC----CCEEETT-TTSEEECSSHHHH
T ss_pred CcCCCeeEEeCCC----CeEEecC-CCCceehHHHHHH
Confidence 3456679999887 4577776 9 78999999665
No 197
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=22.45 E-value=37 Score=25.12 Aligned_cols=37 Identities=19% Similarity=0.433 Sum_probs=24.2
Q ss_pred cccccccccccccccee--ecCC--CCceeeCCchhhhhcc
Q 038034 115 LECAVYLSKFEDTEILR--LLPK--CRHAFHMSCIDQWLEG 151 (422)
Q Consensus 115 ~~CsICLe~f~~~~~~r--~Lp~--C~H~FH~~CI~~WL~~ 151 (422)
..|+-|.-.++..+-.. .... |++.|+..|...|-..
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 36777777776554221 1223 8889999999988643
No 198
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=22.31 E-value=65 Score=23.18 Aligned_cols=40 Identities=15% Similarity=0.284 Sum_probs=28.9
Q ss_pred ccccccccccccccceeecCCCCceee--CCchhhhhccCCCCCcccccccC
Q 038034 115 LECAVYLSKFEDTEILRLLPKCRHAFH--MSCIDQWLEGHASCPLCRYKFDG 164 (422)
Q Consensus 115 ~~CsICLe~f~~~~~~r~Lp~C~H~FH--~~CI~~WL~~~~sCPlCR~~l~~ 164 (422)
..|+-|-..+..++.... . -+..|| ..| -.|-.|+.+|..
T Consensus 3 ~~C~~C~~~I~~~~~~v~-a-~~~~wH~~~~C--------F~C~~C~~~L~~ 44 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVT-Y-NNFSWHASTEC--------FLCSCCSKCLIG 44 (65)
T ss_dssp EECTTTSSEECTTSCEEE-E-TTEEEETTTTT--------SBCTTTCCBCTT
T ss_pred CCCcCCCCeeccCceEEE-E-CCCccCCCCCC--------EECCCCCCcCCC
Confidence 468999998886433322 2 578999 999 568889888754
No 199
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.84 E-value=67 Score=23.20 Aligned_cols=39 Identities=18% Similarity=0.383 Sum_probs=28.5
Q ss_pred CccccccccccccccceeecCCCCceeeCCchhhhhccCCCCCcccccccC
Q 038034 114 GLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGHASCPLCRYKFDG 164 (422)
Q Consensus 114 ~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~l~~ 164 (422)
...|+-|-..+.. +.+. . -+..||..| ..|-.|..+|..
T Consensus 5 ~~~C~~C~~~I~~-~~~~--a-~~~~~H~~C--------F~C~~C~~~L~~ 43 (69)
T 2cur_A 5 SSGCVKCNKAITS-GGIT--Y-QDQPWHADC--------FVCVTCSKKLAG 43 (69)
T ss_dssp CCCCSSSCCCCCT-TCEE--E-TTEEECTTT--------TBCTTTCCBCTT
T ss_pred cCCCcccCCEeCc-ceEE--E-CccccccCc--------CEECCCCCCCCC
Confidence 4579999988864 3332 2 578999999 568899888763
No 200
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=21.76 E-value=32 Score=26.26 Aligned_cols=20 Identities=20% Similarity=0.210 Sum_probs=16.1
Q ss_pred hhhhhccCCCCCcccccccC
Q 038034 145 IDQWLEGHASCPLCRYKFDG 164 (422)
Q Consensus 145 I~~WL~~~~sCPlCR~~l~~ 164 (422)
+++||..--.||+|+.++..
T Consensus 3 md~~LLeiL~CP~ck~~L~~ 22 (67)
T 2jny_A 3 LDPQLLEVLACPKDKGPLRY 22 (67)
T ss_dssp SCGGGTCCCBCTTTCCBCEE
T ss_pred CCHHHHHHhCCCCCCCcCeE
Confidence 56788888889999987753
No 201
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=20.75 E-value=33 Score=26.32 Aligned_cols=20 Identities=25% Similarity=0.539 Sum_probs=14.6
Q ss_pred hhhhhccCCCCCcccccccC
Q 038034 145 IDQWLEGHASCPLCRYKFDG 164 (422)
Q Consensus 145 I~~WL~~~~sCPlCR~~l~~ 164 (422)
+++||..--.||+|+.++..
T Consensus 1 md~~LLeiL~CP~ck~~L~~ 20 (69)
T 2pk7_A 1 MDTKLLDILACPICKGPLKL 20 (69)
T ss_dssp --CCGGGTCCCTTTCCCCEE
T ss_pred CChHHHhheeCCCCCCcCeE
Confidence 46677788899999987763
No 202
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.15 E-value=77 Score=23.64 Aligned_cols=39 Identities=15% Similarity=0.387 Sum_probs=28.2
Q ss_pred CccccccccccccccceeecCCCCceeeCCchhhhhccCCCCCcccccccC
Q 038034 114 GLECAVYLSKFEDTEILRLLPKCRHAFHMSCIDQWLEGHASCPLCRYKFDG 164 (422)
Q Consensus 114 ~~~CsICLe~f~~~~~~r~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~l~~ 164 (422)
...|+.|-..+. +..+ .. -+..||..| ..|-.|..+|..
T Consensus 15 ~~~C~~C~~~I~-~~~~--~a-~~~~~H~~C--------F~C~~C~~~L~~ 53 (81)
T 1x6a_A 15 GEFCHGCSLLMT-GPFM--VA-GEFKYHPEC--------FACMSCKVIIED 53 (81)
T ss_dssp SCBCTTTCCBCC-SCCB--CC-TTCCBCTTS--------CBCTTTCCBCCT
T ss_pred CCcCccCCCCcC-ceEE--EE-CCceecccc--------CCccCCCCccCC
Confidence 347999999887 3332 22 578899998 568899888753
Done!