BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038036
(638 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 184 bits (466), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 183/597 (30%), Positives = 266/597 (44%), Gaps = 85/597 (14%)
Query: 82 SFVIHLETLDLSYNXXXXXXXXXXXXXAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLK 141
S ++LE LD+S N A L L++S N SG S + + LK
Sbjct: 194 SRCVNLEFLDVSSNNFSTGIPFLGDCSA--LQHLDISGNKLSGDFSRAIS----TCTELK 247
Query: 142 ILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAAT-SLQEISLPGNQLSG 200
+L+ S N F G +PP LQ N +G IPD +S A +L + L GN G
Sbjct: 248 LLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 305
Query: 201 AISDGVGNLTSLSMLDLQSNKFSGLIPQD-IGKLTNLKSLQLHTNSLSGFLPQSLMXXXX 259
A+ G+ + L L L SN FSG +P D + K+ LK L L N SG LP+SL
Sbjct: 306 AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA 365
Query: 260 XXXXXXXXXXFRGDLSAYNFS----------TLHNLHTIDLGNNNFTGSFPLTLTSCKVL 309
DLS+ NFS + L + L NN FTG P TL++C L
Sbjct: 366 SLLTL--------DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSEL 417
Query: 310 TAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAI-RILMGCKNLRMLLLCKKF 368
++ LS N + G I + +L L L + N + G I + LM K L L+L
Sbjct: 418 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM---LEGEIPQELMYVKTLETLILDFND 474
Query: 369 FHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIP 428
IP NL + + + + G+IP W+ RL+ L +L L +N +G+IP
Sbjct: 475 LTGEIPSGLSNC------TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 528
Query: 429 GWLGNMPNLFYIDLSYNSISGEFPKEF------------CGLRALALQE--VKNRADGSQ 474
LG+ +L ++DL+ N +G P G R + ++ +K G+
Sbjct: 529 AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAG 588
Query: 475 LQLPLFVPKTKIALYNQQYNKLFSLPPA-----IY------------------LRNNSLN 511
L + ++Q N+L + P +Y + N L+
Sbjct: 589 NLLEF------QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS 642
Query: 512 GSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHF 571
G IP EIG++ +L +L+L N+ SG IPD++ L L LDLS N L G IP ++ L
Sbjct: 643 GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 702
Query: 572 LSSFSVANNDLQGQIPSGGQFLTFPSSSFEGNPRFCGDIVER----QSSCYFIHPRT 624
L+ ++NN+L G IP GQF TFP + F NP CG + R + Y H R+
Sbjct: 703 LTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRS 759
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 140/496 (28%), Positives = 196/496 (39%), Gaps = 82/496 (16%)
Query: 185 ATSLQEISLPGN------------------------QLSGAISDGVGNLTSLSMLDLQSN 220
TS+ S P N ++G++S G SL+ LDL N
Sbjct: 49 VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRN 107
Query: 221 KFSGLI------------------------PQDIG---KLTNLKSLQLHTNSLSGFLPQS 253
SG + P + KL +L+ L L NS+SG
Sbjct: 108 SLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVG 167
Query: 254 LMXXXXXXXXXXXXXXFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIR 313
+ + S NL +D+ +NNF+ P L C L +
Sbjct: 168 WVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLD 226
Query: 314 LSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAI 373
+S NK+ G S I L L+I++N F G I L K+L+ L L + F I
Sbjct: 227 ISGNKLSGDFSRAISTCTELKLLNISSNQF---VGPIPPLP-LKSLQYLSLAENKFTGEI 282
Query: 374 PDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIP-GWLG 432
PD S A L L + G +P + L+ L L SN +G +P L
Sbjct: 283 PD-----FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 337
Query: 433 NMPNLFYIDLSYNSISGEFPKEFCGLRA--LALQEVKNRADGSQLQLPLFVPKTKI-ALY 489
M L +DLS+N SGE P+ L A L L N G L PK + LY
Sbjct: 338 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 397
Query: 490 NQQYNKLFSLPP---------AIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPD 540
Q +PP +++L N L+G+IP +G+L L L L LN GEIP
Sbjct: 398 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 457
Query: 541 QISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPS------GGQFLT 594
++ + LE L L N+L GEIP + + L+ S++NN L G+IP L
Sbjct: 458 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 517
Query: 595 FPSSSFEGN-PRFCGD 609
++SF GN P GD
Sbjct: 518 LSNNSFSGNIPAELGD 533
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 184 bits (466), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 180/582 (30%), Positives = 261/582 (44%), Gaps = 81/582 (13%)
Query: 82 SFVIHLETLDLSYNXXXXXXXXXXXXXAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLK 141
S ++LE LD+S N A L L++S N SG S + + LK
Sbjct: 197 SRCVNLEFLDVSSNNFSTGIPFLGDCSA--LQHLDISGNKLSGDFSRAIS----TCTELK 250
Query: 142 ILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAAT-SLQEISLPGNQLSG 200
+L+ S N F G +PP LQ N +G IPD +S A +L + L GN G
Sbjct: 251 LLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 308
Query: 201 AISDGVGNLTSLSMLDLQSNKFSGLIPQD-IGKLTNLKSLQLHTNSLSGFLPQSLMXXXX 259
A+ G+ + L L L SN FSG +P D + K+ LK L L N SG LP+SL
Sbjct: 309 AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA 368
Query: 260 XXXXXXXXXXFRGDLSAYNFS----------TLHNLHTIDLGNNNFTGSFPLTLTSCKVL 309
DLS+ NFS + L + L NN FTG P TL++C L
Sbjct: 369 SLLTL--------DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSEL 420
Query: 310 TAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAI-RILMGCKNLRMLLLCKKF 368
++ LS N + G I + +L L L + N + G I + LM K L L+L
Sbjct: 421 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM---LEGEIPQELMYVKTLETLILDFND 477
Query: 369 FHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIP 428
IP NL + + + + G+IP W+ RL+ L +L L +N +G+IP
Sbjct: 478 LTGEIPSGLSNC------TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531
Query: 429 GWLGNMPNLFYIDLSYNSISGEFPKEF------------CGLRALALQE--VKNRADGSQ 474
LG+ +L ++DL+ N +G P G R + ++ +K G+
Sbjct: 532 AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAG 591
Query: 475 LQLPLFVPKTKIALYNQQYNKLFSLPPA-----IY------------------LRNNSLN 511
L + ++Q N+L + P +Y + N L+
Sbjct: 592 NLLEF------QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS 645
Query: 512 GSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHF 571
G IP EIG++ +L +L+L N+ SG IPD++ L L LDLS N L G IP ++ L
Sbjct: 646 GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 705
Query: 572 LSSFSVANNDLQGQIPSGGQFLTFPSSSFEGNPRFCGDIVER 613
L+ ++NN+L G IP GQF TFP + F NP CG + R
Sbjct: 706 LTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 747
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 140/496 (28%), Positives = 196/496 (39%), Gaps = 82/496 (16%)
Query: 185 ATSLQEISLPGN------------------------QLSGAISDGVGNLTSLSMLDLQSN 220
TS+ S P N ++G++S G SL+ LDL N
Sbjct: 52 VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRN 110
Query: 221 KFSGLI------------------------PQDIG---KLTNLKSLQLHTNSLSGFLPQS 253
SG + P + KL +L+ L L NS+SG
Sbjct: 111 SLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVG 170
Query: 254 LMXXXXXXXXXXXXXXFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIR 313
+ + S NL +D+ +NNF+ P L C L +
Sbjct: 171 WVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLD 229
Query: 314 LSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAI 373
+S NK+ G S I L L+I++N F G I L K+L+ L L + F I
Sbjct: 230 ISGNKLSGDFSRAISTCTELKLLNISSNQF---VGPIPPLP-LKSLQYLSLAENKFTGEI 285
Query: 374 PDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIP-GWLG 432
PD S A L L + G +P + L+ L L SN +G +P L
Sbjct: 286 PD-----FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 340
Query: 433 NMPNLFYIDLSYNSISGEFPKEFCGLRA--LALQEVKNRADGSQLQLPLFVPKTKI-ALY 489
M L +DLS+N SGE P+ L A L L N G L PK + LY
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400
Query: 490 NQQYNKLFSLPP---------AIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPD 540
Q +PP +++L N L+G+IP +G+L L L L LN GEIP
Sbjct: 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460
Query: 541 QISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPS------GGQFLT 594
++ + LE L L N+L GEIP + + L+ S++NN L G+IP L
Sbjct: 461 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 520
Query: 595 FPSSSFEGN-PRFCGD 609
++SF GN P GD
Sbjct: 521 LSNNSFSGNIPAELGD 536
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/253 (28%), Positives = 114/253 (45%), Gaps = 41/253 (16%)
Query: 380 AISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFY 439
++++ + N L +G G + G IP +A+L +L L + ++G+IP +L + L
Sbjct: 71 SLANLPYLNFLYIG-GINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129
Query: 440 IDLSYNSISGEFPKEFCGLRAL-ALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFS 498
+D SYN++SG P L L + NR G+ +P + ++KLF+
Sbjct: 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA-------IPDSY-----GSFSKLFT 177
Query: 499 LPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIP------------------- 539
++ + N L G IP NL L +DLS N G+
Sbjct: 178 ---SMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233
Query: 540 ----DQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPSGGQFLTF 595
++ NL GLDL N ++G +P + L FL S +V+ N+L G+IP GG F
Sbjct: 234 AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRF 293
Query: 596 PSSSFEGNPRFCG 608
S++ N CG
Sbjct: 294 DVSAYANNKCLCG 306
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 90/332 (27%), Positives = 133/332 (40%), Gaps = 64/332 (19%)
Query: 1 QETLLSLNFSASNPPL--NWSFSTDCC--FWEGIKCDSKA---RVTHLWLPYRGLSGSIY 53
++ LL + NP +W +TDCC W G+ CD+ RV +L LSG
Sbjct: 8 KQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNL-----DLSGLNL 62
Query: 54 PFIGXXXXXXXXXXXXXXXSGPLAI-NSFSFVIHLETLDLSYNXXXXXXXXXXXXXAENL 112
P P I +S + + +L L + L
Sbjct: 63 P-------------------KPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103
Query: 113 ITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFN 172
L ++H SG+IP F S + +L LDFSYN SG LPP + + L N
Sbjct: 104 HYLYITHTNVSGAIPDFLS----QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159
Query: 173 YLSGSIPDDISAATSL-QEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIG 231
+SG+IPD + + L +++ N+L+G I NL +L+ +DL N G G
Sbjct: 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFG 218
Query: 232 KLTNLKSLQLHTNSLSGFLPQSLMXXXXXXXXXXXXXXFRGDLSAYNFSTLHNLHTIDLG 291
N + + L NSL+ DL S NL+ +DL
Sbjct: 219 SDKNTQKIHLAKNSLA------------------------FDLGKVGLS--KNLNGLDLR 252
Query: 292 NNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQI 323
NN G+ P LT K L ++ +S N + G+I
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 73/301 (24%), Positives = 119/301 (39%), Gaps = 83/301 (27%)
Query: 154 LPPGLGNCSKLQ-TFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSL 212
+P L N L + G N L G IP I+ T L + + +SGAI D + + +L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 213 SMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMXXXXXXXXXXXXXXFRG 272
LD N SG +P I L NL + N +SG +P S
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY------------------ 169
Query: 273 DLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALES 332
GSF K+ T++ +SRN++ G+I P L +
Sbjct: 170 ------------------------GSF------SKLFTSMTISRNRLTGKIPPTFANL-N 198
Query: 333 LSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVL 392
L+++ ++ N + G +L G D+N + I + +N L
Sbjct: 199 LAFVDLSRN---MLEGDASVLFGS------------------DKNTQKI--HLAKNSLAF 235
Query: 393 GIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFP 452
+G + K L LDL +N+I G++P L + L +++S+N++ GE P
Sbjct: 236 DLGKVGLS----------KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Query: 453 K 453
+
Sbjct: 286 Q 286
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Query: 508 NSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSII 567
N+L G IP I L LH L ++ N SG IPD +SQ+ L LD S N L G +P SI
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 568 DLHFLSSFSVANNDLQGQIP-SGGQFLTFPSSSFEGNPRFCGDI 610
L L + N + G IP S G F +S R G I
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI 190
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 77/167 (46%), Gaps = 29/167 (17%)
Query: 110 ENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQT-FR 168
+ L+TL+ S+N SG++P S SL +L + F N SG +P G+ SKL T
Sbjct: 125 KTLVTLDFSYNALSGTLPPSIS----SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT 180
Query: 169 AGFNYLSGSIPDDISAATSLQEISLPGNQLSGAIS-----------------------DG 205
N L+G IP A +L + L N L G S
Sbjct: 181 ISRNRLTGKIPPTF-ANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK 239
Query: 206 VGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQ 252
VG +L+ LDL++N+ G +PQ + +L L SL + N+L G +PQ
Sbjct: 240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 127/502 (25%), Positives = 185/502 (36%), Gaps = 65/502 (12%)
Query: 111 NLITLNVSHNMFSGSIPS-FTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRA 169
N+ LN++HN P+ FT + S L ILD +N S P L+
Sbjct: 26 NITVLNLTHNQLRRLPPTNFTRY-----SQLAILDAGFNSISKLEPELCQILPLLKVLNL 80
Query: 170 GFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQ----------- 218
N LS T+L E+ L N + S+ N +L LDL
Sbjct: 81 QHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGT 140
Query: 219 -------------SNKFSGLIPQDIGKLTN--LKSLQLHTNSLSGFLPQSLMXXXXXXXX 263
NK L +++ L N L+ L L +N L F P
Sbjct: 141 GVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFAL 200
Query: 264 XXXXXXFRGDLSAYNFSTLHN--LHTIDLGNNNFTGSFPLTLTSCKV--LTAIRLSRNKI 319
L+ L N + + L NN + T + K LT + LS N +
Sbjct: 201 LLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNL 260
Query: 320 VGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQR 379
+ L SL YLS+ NN ++ R G NLR L L + F +++ +
Sbjct: 261 HDVGNGSFSYLPSLRYLSLEYNNIQRLSP--RSFYGLSNLRYLSLKRAFTKQSVSLASHP 318
Query: 380 AISSYAFQ---NLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGS-----NQITGSIPGWL 431
I ++FQ L L + D I L L+ L L +T L
Sbjct: 319 NIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSL 378
Query: 432 GNMPNLFYIDLSYNSISGEFPKEFCGLRAL-----ALQEVKNRADGSQLQ-----LPLFV 481
+ P L ++L+ N IS F L L L E++ + G + + +++
Sbjct: 379 AHSP-LLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYL 437
Query: 482 PKTKIALYNQQYNKLFSLPPAI---YLRNNSL-NGSI-PIEIGNLKFLHVLDLSLNNFSG 536
K Y Q F+L P++ LR +L N I P L+ L +LDLS NN +
Sbjct: 438 SYNK---YLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIAN 494
Query: 537 EIPDQISQLTNLEGLDLSENNL 558
D + L NLE LD NNL
Sbjct: 495 INEDLLEGLENLEILDFQHNNL 516
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 76/301 (25%), Positives = 125/301 (41%), Gaps = 13/301 (4%)
Query: 178 IPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLK 237
IPDD+ + ++ ++L NQL + L++LD N S L P+ L LK
Sbjct: 19 IPDDLPSNITV--LNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLK 76
Query: 238 SLQLHTNSLSGFLPQSLMXXXXXXXXXXXXXXFRGDLSAYNFSTLHNLHTIDLGNNNFTG 297
L L N LS Q+ + + + F NL +DL +N +
Sbjct: 77 VLNLQHNELSQISDQTFVFCTNLTELDLMSNSIH-KIKSNPFKNQKNLIKLDLSHNGLSS 135
Query: 298 SFPLTLTSCKVLTAIRLSRNKIVGQISPEI--LALESLSYLSITNNNFSNITGAIRILMG 355
+ T + L + L++NKI+ S E+ L SL L +++N + +G
Sbjct: 136 TKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIG 195
Query: 356 CKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLK--KL 413
L LLL + + ++ +S+ + QN L + + ++ + + LK L
Sbjct: 196 --KLFALLLNNAQLNPHLTEKLCWELSNTSIQN---LSLANNQLLATSESTFSGLKWTNL 250
Query: 414 QVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGS 473
LDL N + G +P+L Y+ L YN+I P+ F GL L +K RA
Sbjct: 251 TQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLK-RAFTK 309
Query: 474 Q 474
Q
Sbjct: 310 Q 310
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 47/111 (42%)
Query: 138 SSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQ 197
S++ +L+ ++N P S+L AGFN +S P+ L+ ++L N+
Sbjct: 25 SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNE 84
Query: 198 LSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSG 248
LS T+L+ LDL SN + NL L L N LS
Sbjct: 85 LSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSS 135
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 106/436 (24%), Positives = 164/436 (37%), Gaps = 88/436 (20%)
Query: 138 SSLKILDFSYN---DFSGQLPPGLGNCSKLQTFRAGFN-YLSGSIPDDISAATSLQEISL 193
SSL+ LD S N +FS +G L A N +L+ + ++S TS+Q +SL
Sbjct: 171 SSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSN-TSIQNLSL 229
Query: 194 PGNQLSGAISDGVGNL--TSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLP 251
NQL L T+L+ LDL N + L +L+ L L N++ P
Sbjct: 230 ANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSP 289
Query: 252 QSLMXXXXXXXXXXXXXXFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTA 311
+S F L NL L+L +
Sbjct: 290 RS-------------------------FYGLSNLRY-------------LSLKRAFTKQS 311
Query: 312 IRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHE 371
+ L+ + + S + L+ L YL++ +NN + G +L+ L L K F
Sbjct: 312 VSLASHPNIDDFSFQ--WLKYLEYLNMDDNNIPSTKS--NTFTGLVSLKYLSLSKTF--T 365
Query: 372 AIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPG-- 429
++ S A LL L + I + L +L++LDLG N+I + G
Sbjct: 366 SLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQE 425
Query: 430 WLGNMPNLFYIDLSYNSI----SGEF----------------------PKEFCGLRALAL 463
W G + N+F I LSYN + F P F LR L +
Sbjct: 426 WRG-LRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTI 484
Query: 464 QEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKF 523
++ N + + + L + + + Q+N L L + R N G + G L
Sbjct: 485 LDLSNN-NIANINEDLLEGLENLEILDFQHNNLARL----WKRANP-GGPVNFLKG-LSH 537
Query: 524 LHVLDLSLNNFSGEIP 539
LH+L+L N EIP
Sbjct: 538 LHILNLESNGL-DEIP 552
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 50/106 (47%), Gaps = 16/106 (15%)
Query: 468 NRADGSQLQL---PLFVPKTKIALYNQQYNKLFSLPPAIYLRN----------NSLNGSI 514
N AD S L+L P +P + I + N +N+L LPP + R NS++
Sbjct: 7 NVADCSHLKLTHIPDDLP-SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLE 65
Query: 515 PIEIGNLKFLHVLDLSLNNFSGEIPDQISQL-TNLEGLDLSENNLH 559
P L L VL+L N S +I DQ TNL LDL N++H
Sbjct: 66 PELCQILPLLKVLNLQHNELS-QISDQTFVFCTNLTELDLMSNSIH 110
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 75/258 (29%), Positives = 110/258 (42%), Gaps = 30/258 (11%)
Query: 174 LSGSIPDDISAA---TSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDI 230
LS + DISA TSLQ++S NQ++ + NLT+L LD+ SNK S + +
Sbjct: 136 LSSNTISDISALSGLTSLQQLSFSSNQVTDL--KPLANLTTLERLDISSNKVSDI--SVL 191
Query: 231 GKLTNLKSLQLHTNSLSGFLPQSLMXXXXXXXXXXXXXXFRGDLSAYNFSTLHNLHTIDL 290
KLTNL+SL N +S P ++ G L++ L NL +DL
Sbjct: 192 AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLAS-----LTNLTDLDL 246
Query: 291 GNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAI 350
NN + P L+ LT ++L N+I ISP + L +L+ L + N +I+
Sbjct: 247 ANNQISNLAP--LSGLTKLTELKLGANQI-SNISP-LAGLTALTNLELNENQLEDISP-- 300
Query: 351 RILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARL 410
+ KNL L L + P + + F N V + LA L
Sbjct: 301 --ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDVSS----------LANL 348
Query: 411 KKLQVLDLGSNQITGSIP 428
+ L G NQI+ P
Sbjct: 349 TNINWLSAGHNQISDLTP 366
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 79/169 (46%), Gaps = 19/169 (11%)
Query: 405 TWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALA-- 462
T LA L L L L +NQIT P L N+ NL ++LS N+IS GL +L
Sbjct: 101 TPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQL 156
Query: 463 ------LQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPI 516
+ ++K A+ + L+ L + K++ KL +L I NN ++ P+
Sbjct: 157 SFSSNQVTDLKPLANLTTLE-RLDISSNKVSDI-SVLAKLTNLESLIA-TNNQISDITPL 213
Query: 517 EIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLS 565
I ++ +LSLN + ++ LTNL LDL+ N + PLS
Sbjct: 214 GI----LTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS 258
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 75/258 (29%), Positives = 110/258 (42%), Gaps = 30/258 (11%)
Query: 174 LSGSIPDDISAA---TSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDI 230
LS + DISA TSLQ++S NQ++ + NLT+L LD+ SNK S + +
Sbjct: 136 LSSNTISDISALSGLTSLQQLSFSSNQVTDL--KPLANLTTLERLDISSNKVSDI--SVL 191
Query: 231 GKLTNLKSLQLHTNSLSGFLPQSLMXXXXXXXXXXXXXXFRGDLSAYNFSTLHNLHTIDL 290
KLTNL+SL N +S P ++ G L++ L NL +DL
Sbjct: 192 AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLAS-----LTNLTDLDL 246
Query: 291 GNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAI 350
NN + P L+ LT ++L N+I ISP + L +L+ L + N +I+
Sbjct: 247 ANNQISNLAP--LSGLTKLTELKLGANQI-SNISP-LAGLTALTNLELNENQLEDISP-- 300
Query: 351 RILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARL 410
+ KNL L L + P + + F N V + LA L
Sbjct: 301 --ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSS----------LANL 348
Query: 411 KKLQVLDLGSNQITGSIP 428
+ L G NQI+ P
Sbjct: 349 TNINWLSAGHNQISDLTP 366
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 79/169 (46%), Gaps = 19/169 (11%)
Query: 405 TWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALA-- 462
T LA L L L L +NQIT P L N+ NL ++LS N+IS GL +L
Sbjct: 101 TPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQL 156
Query: 463 ------LQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPI 516
+ ++K A+ + L+ L + K++ KL +L I NN ++ P+
Sbjct: 157 SFSSNQVTDLKPLANLTTLE-RLDISSNKVSDI-SVLAKLTNLESLIA-TNNQISDITPL 213
Query: 517 EIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLS 565
I ++ +LSLN + ++ LTNL LDL+ N + PLS
Sbjct: 214 GI----LTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS 258
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 110/258 (42%), Gaps = 30/258 (11%)
Query: 174 LSGSIPDDISAA---TSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDI 230
LS + DISA TSLQ+++ NQ++ + NLT+L LD+ SNK S + +
Sbjct: 136 LSSNTISDISALSGLTSLQQLNFSSNQVTDL--KPLANLTTLERLDISSNKVSDI--SVL 191
Query: 231 GKLTNLKSLQLHTNSLSGFLPQSLMXXXXXXXXXXXXXXFRGDLSAYNFSTLHNLHTIDL 290
KLTNL+SL N +S P ++ G L++ L NL +DL
Sbjct: 192 AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLAS-----LTNLTDLDL 246
Query: 291 GNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAI 350
NN + P L+ LT ++L N+I ISP + L +L+ L + N +I+
Sbjct: 247 ANNQISNLAP--LSGLTKLTELKLGANQI-SNISP-LAGLTALTNLELNENQLEDISP-- 300
Query: 351 RILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARL 410
+ KNL L L + P + + F N V + LA L
Sbjct: 301 --ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSS----------LANL 348
Query: 411 KKLQVLDLGSNQITGSIP 428
+ L G NQI+ P
Sbjct: 349 TNINWLSAGHNQISDLTP 366
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 72/169 (42%), Gaps = 19/169 (11%)
Query: 405 TWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQ 464
T LA L L L L +NQIT P L N+ NL ++LS N+IS + L L
Sbjct: 101 TPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-----DISALSGLTSL 153
Query: 465 EVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLP--------PAIYLRNNSLNGSIPI 516
+ N + L T + + NK+ + ++ NN ++ P+
Sbjct: 154 QQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPL 213
Query: 517 EIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLS 565
I ++ +LSLN + ++ LTNL LDL+ N + PLS
Sbjct: 214 GI----LTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS 258
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 76/258 (29%), Positives = 111/258 (43%), Gaps = 31/258 (12%)
Query: 174 LSGSIPDDISAA---TSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDI 230
LS + DISA TSLQ++S GNQ++ + NLT+L LD+ SNK S + +
Sbjct: 140 LSSNTISDISALSGLTSLQQLSF-GNQVTDL--KPLANLTTLERLDISSNKVSDI--SVL 194
Query: 231 GKLTNLKSLQLHTNSLSGFLPQSLMXXXXXXXXXXXXXXFRGDLSAYNFSTLHNLHTIDL 290
KLTNL+SL N +S P ++ G L++ L NL +DL
Sbjct: 195 AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLAS-----LTNLTDLDL 249
Query: 291 GNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAI 350
NN + P L+ LT ++L N+I ISP + L +L+ L + N +I+
Sbjct: 250 ANNQISNLAP--LSGLTKLTELKLGANQI-SNISP-LAGLTALTNLELNENQLEDISP-- 303
Query: 351 RILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARL 410
+ KNL L L + P + + F N V + LA L
Sbjct: 304 --ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSS----------LANL 351
Query: 411 KKLQVLDLGSNQITGSIP 428
+ L G NQI+ P
Sbjct: 352 TNINWLSAGHNQISDLTP 369
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 79/168 (47%), Gaps = 18/168 (10%)
Query: 405 TWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALA-- 462
T LA L L L L +NQIT P L N+ NL ++LS N+IS GL +L
Sbjct: 105 TPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQL 160
Query: 463 -----LQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIE 517
+ ++K A+ + L+ L + K++ KL +L I NN ++ P+
Sbjct: 161 SFGNQVTDLKPLANLTTLE-RLDISSNKVSDI-SVLAKLTNLESLIA-TNNQISDITPLG 217
Query: 518 IGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLS 565
I ++ +LSLN + ++ LTNL LDL+ N + PLS
Sbjct: 218 I----LTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS 261
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 76/258 (29%), Positives = 111/258 (43%), Gaps = 31/258 (12%)
Query: 174 LSGSIPDDISAA---TSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDI 230
LS + DISA TSLQ++S GNQ++ + NLT+L LD+ SNK S + +
Sbjct: 141 LSSNTISDISALSGLTSLQQLSF-GNQVTDL--KPLANLTTLERLDISSNKVSDI--SVL 195
Query: 231 GKLTNLKSLQLHTNSLSGFLPQSLMXXXXXXXXXXXXXXFRGDLSAYNFSTLHNLHTIDL 290
KLTNL+SL N +S P ++ G L++ L NL +DL
Sbjct: 196 AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLAS-----LTNLTDLDL 250
Query: 291 GNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAI 350
NN + P L+ LT ++L N+I ISP + L +L+ L + N +I+
Sbjct: 251 ANNQISNLAP--LSGLTKLTELKLGANQI-SNISP-LAGLTALTNLELNENQLEDISP-- 304
Query: 351 RILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARL 410
+ KNL L L + P + + F N V + LA L
Sbjct: 305 --ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSS----------LANL 352
Query: 411 KKLQVLDLGSNQITGSIP 428
+ L G NQI+ P
Sbjct: 353 TNINWLSAGHNQISDLTP 370
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 79/168 (47%), Gaps = 18/168 (10%)
Query: 405 TWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALA-- 462
T LA L L L L +NQIT P L N+ NL ++LS N+IS GL +L
Sbjct: 106 TPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQL 161
Query: 463 -----LQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIE 517
+ ++K A+ + L+ L + K++ KL +L I NN ++ P+
Sbjct: 162 SFGNQVTDLKPLANLTTLE-RLDISSNKVSDI-SVLAKLTNLESLIA-TNNQISDITPLG 218
Query: 518 IGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLS 565
I ++ +LSLN + ++ LTNL LDL+ N + PLS
Sbjct: 219 I----LTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS 262
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 75/258 (29%), Positives = 111/258 (43%), Gaps = 31/258 (12%)
Query: 174 LSGSIPDDISAA---TSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDI 230
LS + DISA TSLQ+++ GNQ++ + NLT+L LD+ SNK S + +
Sbjct: 136 LSSNTISDISALSGLTSLQQLNF-GNQVTDL--KPLANLTTLERLDISSNKVSDI--SVL 190
Query: 231 GKLTNLKSLQLHTNSLSGFLPQSLMXXXXXXXXXXXXXXFRGDLSAYNFSTLHNLHTIDL 290
KLTNL+SL N +S P ++ G L++ L NL +DL
Sbjct: 191 AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLAS-----LTNLTDLDL 245
Query: 291 GNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAI 350
NN + P L+ LT ++L N+I ISP + L +L+ L + N +I+
Sbjct: 246 ANNQISNLAP--LSGLTKLTELKLGANQI-SNISP-LAGLTALTNLELNENQLEDISP-- 299
Query: 351 RILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARL 410
+ KNL L L + P + + F N V + LA L
Sbjct: 300 --ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDVSS----------LANL 347
Query: 411 KKLQVLDLGSNQITGSIP 428
+ L G NQI+ P
Sbjct: 348 TNINWLSAGHNQISDLTP 365
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 79/168 (47%), Gaps = 18/168 (10%)
Query: 405 TWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALA-- 462
T LA L L L L +NQIT P L N+ NL ++LS N+IS GL +L
Sbjct: 101 TPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQL 156
Query: 463 -----LQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIE 517
+ ++K A+ + L+ L + K++ KL +L I NN ++ P+
Sbjct: 157 NFGNQVTDLKPLANLTTLE-RLDISSNKVSDI-SVLAKLTNLESLIA-TNNQISDITPLG 213
Query: 518 IGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLS 565
I ++ +LSLN + ++ LTNL LDL+ N + PLS
Sbjct: 214 I----LTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS 257
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 75/258 (29%), Positives = 111/258 (43%), Gaps = 31/258 (12%)
Query: 174 LSGSIPDDISAA---TSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDI 230
LS + DISA TSLQ+++ GNQ++ + NLT+L LD+ SNK S + +
Sbjct: 136 LSSNTISDISALSGLTSLQQLNF-GNQVTDL--KPLANLTTLERLDISSNKVSDI--SVL 190
Query: 231 GKLTNLKSLQLHTNSLSGFLPQSLMXXXXXXXXXXXXXXFRGDLSAYNFSTLHNLHTIDL 290
KLTNL+SL N +S P ++ G L++ L NL +DL
Sbjct: 191 AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLAS-----LTNLTDLDL 245
Query: 291 GNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAI 350
NN + P L+ LT ++L N+I ISP + L +L+ L + N +I+
Sbjct: 246 ANNQISNLAP--LSGLTKLTELKLGANQI-SNISP-LAGLTALTNLELNENQLEDISP-- 299
Query: 351 RILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARL 410
+ KNL L L + P + + F N V + LA L
Sbjct: 300 --ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSS----------LANL 347
Query: 411 KKLQVLDLGSNQITGSIP 428
+ L G NQI+ P
Sbjct: 348 TNINWLSAGHNQISDLTP 365
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 79/168 (47%), Gaps = 18/168 (10%)
Query: 405 TWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALA-- 462
T LA L L L L +NQIT P L N+ NL ++LS N+IS GL +L
Sbjct: 101 TPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQL 156
Query: 463 -----LQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIE 517
+ ++K A+ + L+ L + K++ KL +L I NN ++ P+
Sbjct: 157 NFGNQVTDLKPLANLTTLE-RLDISSNKVSDI-SVLAKLTNLESLIA-TNNQISDITPLG 213
Query: 518 IGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLS 565
I ++ +LSLN + ++ LTNL LDL+ N + PLS
Sbjct: 214 I----LTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS 257
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 61/142 (42%), Gaps = 33/142 (23%)
Query: 87 LETLDLSYNXXXXXXXXXXXXXAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFS 146
LETLD+S N AE+++ LN+S NM +GS+ F K +K+LD
Sbjct: 405 LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV--FRCLPPK----VKVLDLH 458
Query: 147 YNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGV 206
N SIP D++ +LQE+++ NQL ++ DGV
Sbjct: 459 NNRI-------------------------MSIPKDVTHLQALQELNVASNQLK-SVPDGV 492
Query: 207 -GNLTSLSMLDLQSNKFSGLIP 227
LTSL + L N + P
Sbjct: 493 FDRLTSLQYIWLHDNPWDCTCP 514
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 55/138 (39%), Gaps = 30/138 (21%)
Query: 138 SSLKILDFSYNDFSGQLPPGLG--------------------------NCSKLQTFRAGF 171
SS L+F+ N F+ + G N S L+T
Sbjct: 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL 412
Query: 172 NYLSGSIPDDISA-ATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDI 230
N L+ D A A S+ ++L N L+G++ + + +LDL +N+ IP+D+
Sbjct: 413 NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS-IPKDV 469
Query: 231 GKLTNLKSLQLHTNSLSG 248
L L+ L + +N L
Sbjct: 470 THLQALQELNVASNQLKS 487
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 101/255 (39%), Gaps = 31/255 (12%)
Query: 177 SIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNL 236
++P +IS T+L + L N +S D L L L L +NK S + + L L
Sbjct: 47 AVPKEISPDTTL--LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKL 104
Query: 237 KSLQLHTNSLSGF---LPQSLMXXXXXXXXXXXXXXFRGDLSAYNFSTLHNLHTIDLGNN 293
+ L + N L LP SL+ + FS L N++ I++G N
Sbjct: 105 QKLYISKNHLVEIPPNLPSSLVELRIHDNRIR-------KVPKGVFSGLRNMNCIEMGGN 157
Query: 294 NF--TGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIR 351
+G P K L +R+S K+ G P+ L E+L+ L + +N I
Sbjct: 158 PLENSGFEPGAFDGLK-LNYLRISEAKLTG--IPKDLP-ETLNELHLDHNKIQAI----- 208
Query: 352 ILMGCKNLRMLLLCKKFFHEAIPDENQRAIS--SYAFQNLLVLGIGDCEIKGQIPTWLAR 409
L LL K + + R I S +F L D ++P L
Sbjct: 209 ------ELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPD 262
Query: 410 LKKLQVLDLGSNQIT 424
LK LQV+ L +N IT
Sbjct: 263 LKLLQVVYLHTNNIT 277
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 124 GSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDIS 183
G SFTS + +++K LD S+N + L C+ LQ + ++ D
Sbjct: 38 GRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFY 97
Query: 184 AATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGL-IPQDIGKLTNLKSLQL 241
+ SL+ + L N LS S G L+SL L+L N + L + LTNL++L++
Sbjct: 98 SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI 156
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 124 GSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDIS 183
G SFTS + +++K LD S+N + L C+ LQ + ++ D
Sbjct: 12 GRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFY 71
Query: 184 AATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGL-IPQDIGKLTNLKSLQL 241
+ SL+ + L N LS S G L+SL L+L N + L + LTNL++L++
Sbjct: 72 SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI 130
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 78/209 (37%), Gaps = 37/209 (17%)
Query: 273 DLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALES 332
++ Y F+ H + + +G N P + +LT + L RN +
Sbjct: 83 EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPK 142
Query: 333 LSYLSITNNNFSNIT-GAIRILMGCKNLRM---------LLLCKKFFHEAIPDENQRAIS 382
L+ LS++NNN I + +NL++ L L FH +
Sbjct: 143 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANV--------- 193
Query: 383 SYAFQNLLVLGIGDCE----------IKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLG 432
SY + L + I E ++G + +L +L L N +T + WL
Sbjct: 194 SYNLLSTLAIPIAVEELDASHNSINVVRGPVNV------ELTILKLQHNNLTDT--AWLL 245
Query: 433 NMPNLFYIDLSYNSISGEFPKEFCGLRAL 461
N P L +DLSYN + F ++ L
Sbjct: 246 NYPGLVEVDLSYNELEKIMYHPFVKMQRL 274
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 140 LKILDFSYNDFSGQLPPGL-GNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQL 198
L +L ND S LP G+ N KL T N L D A TSLQ + L N+L
Sbjct: 119 LTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 177
Query: 199 SGA 201
+
Sbjct: 178 THV 180
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 177 SIPDDI-SAATSLQEISLPGNQLSGAISDGVGN-LTSLSMLDLQSNKFSGLIPQDIGKLT 234
S+P+ + TSL ++ L GN+L ++ +GV N LTSL+ L+L +N+ L KLT
Sbjct: 42 SLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLT 100
Query: 235 NLKSLQLHTNSL 246
LK L L+TN L
Sbjct: 101 QLKELALNTNQL 112
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 173 YLSG----SIPDDI-SAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIP 227
YL G S+P+ + + TSL ++L NQL + LT L L L +N+ L
Sbjct: 58 YLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPD 117
Query: 228 QDIGKLTNLKSLQLHTNSL 246
KLT LK L+L+ N L
Sbjct: 118 GVFDKLTQLKDLRLYQNQL 136
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 78/209 (37%), Gaps = 37/209 (17%)
Query: 273 DLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALES 332
++ Y F+ H + + +G N P + +LT + L RN +
Sbjct: 89 EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPK 148
Query: 333 LSYLSITNNNFSNIT-GAIRILMGCKNLRM---------LLLCKKFFHEAIPDENQRAIS 382
L+ LS++NNN I + +NL++ L L FH +
Sbjct: 149 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANV--------- 199
Query: 383 SYAFQNLLVLGIGDCE----------IKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLG 432
SY + L + I E ++G + +L +L L N +T + WL
Sbjct: 200 SYNLLSTLAIPIAVEELDASHNSINVVRGPVNV------ELTILKLQHNNLTDT--AWLL 251
Query: 433 NMPNLFYIDLSYNSISGEFPKEFCGLRAL 461
N P L +DLSYN + F ++ L
Sbjct: 252 NYPGLVEVDLSYNELEKIMYHPFVKMQRL 280
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 140 LKILDFSYNDFSGQLPPGL-GNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQL 198
L +L ND S LP G+ N KL T N L D A TSLQ + L N+L
Sbjct: 125 LTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 183
Query: 199 S 199
+
Sbjct: 184 T 184
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 2/128 (1%)
Query: 120 NMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIP 179
++ S + + + + L+ L L+ YN + ++L T N L+ S+P
Sbjct: 41 DLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLP 99
Query: 180 DDI-SAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKS 238
+ T L ++ L GNQL S LT L L L +N+ + KLTNL++
Sbjct: 100 LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQT 159
Query: 239 LQLHTNSL 246
L L TN L
Sbjct: 160 LSLSTNQL 167
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 2/128 (1%)
Query: 120 NMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIP 179
++ S + + + + L+ L L+ YN + ++L T N L+ S+P
Sbjct: 41 DLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLP 99
Query: 180 DDI-SAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKS 238
+ T L ++ L GNQL S LT L L L +N+ + KLTNL++
Sbjct: 100 LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQT 159
Query: 239 LQLHTNSL 246
L L TN L
Sbjct: 160 LSLSTNQL 167
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 7/110 (6%)
Query: 114 TLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPG-LGNCSKLQTFRAGFN 172
TL++SHN S+P ++L +L +LD S+N + LP G L +LQ N
Sbjct: 81 TLDLSHNQLQ-SLPLL----GQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGN 134
Query: 173 YLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKF 222
L P ++ L+++SL NQL+ + + L +L L LQ N
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 54/137 (39%), Gaps = 8/137 (5%)
Query: 110 ENLITLNVSHNMFSG-SIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFR 168
+NL TL V+ N I F L +L L N P + +KL
Sbjct: 85 KNLETLWVTDNKLQALPIGVFDQ-----LVNLAELRLDRNQLKSLPPRVFDSLTKLTYLS 139
Query: 169 AGFNYLSGSIPDDI-SAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIP 227
G+N L S+P + TSL+E+ L NQL LT L L L +N+ +
Sbjct: 140 LGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE 198
Query: 228 QDIGKLTNLKSLQLHTN 244
L LK LQL N
Sbjct: 199 GAFDSLEKLKMLQLQEN 215
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 64/150 (42%), Gaps = 30/150 (20%)
Query: 215 LDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMXXXXXXXXXXXXXXFRGDL 274
LDLQSNK S L + +LT L+ L L+ N L L
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-------------------------L 76
Query: 275 SAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKV-LTAIRLSRNKIVGQISPEIL-ALES 332
A F L NL T+ + +N + P+ + V L +RL RN++ + P + +L
Sbjct: 77 PAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQL-KSLPPRVFDSLTK 134
Query: 333 LSYLSITNNNFSNI-TGAIRILMGCKNLRM 361
L+YLS+ N ++ G L K LR+
Sbjct: 135 LTYLSLGYNELQSLPKGVFDKLTSLKELRL 164
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 47/114 (41%), Gaps = 2/114 (1%)
Query: 135 KSLSSLKILDFSYNDFSGQLPPGL-GNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISL 193
K L +L+ L + N LP G+ L R N L P + T L +SL
Sbjct: 82 KELKNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSL 140
Query: 194 PGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLS 247
N+L LTSL L L +N+ + KLT LK+L+L N L
Sbjct: 141 GYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 7/110 (6%)
Query: 114 TLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPG-LGNCSKLQTFRAGFN 172
TL++SHN S+P ++L +L +LD S+N + LP G L +LQ N
Sbjct: 81 TLDLSHNQLQ-SLPLL----GQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGN 134
Query: 173 YLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKF 222
L P ++ L+++SL NQL+ + + L +L L LQ N
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 7/110 (6%)
Query: 114 TLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPG-LGNCSKLQTFRAGFN 172
TL++SHN S+P ++L +L +LD S+N + LP G L +LQ N
Sbjct: 81 TLDLSHNQLQ-SLPLL----GQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGN 134
Query: 173 YLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKF 222
L P ++ L+++SL NQL+ + + L +L L LQ N
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 7/110 (6%)
Query: 114 TLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPG-LGNCSKLQTFRAGFN 172
TL++SHN S+P ++L +L +LD S+N + LP G L +LQ N
Sbjct: 81 TLDLSHNQLQ-SLPLL----GQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGN 134
Query: 173 YLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKF 222
L P ++ L+++SL NQL+ + + L +L L LQ N
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%)
Query: 403 IPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALA 462
+P L+ K L ++DL +N+I+ NM L + LSYN + P+ F GL++L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 463 L 463
L
Sbjct: 106 L 106
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 173 YLSGS----IPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQ 228
YL G+ +P ++S L I L N++S + N+T L L L N+ + P+
Sbjct: 37 YLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPR 96
Query: 229 DIGKLTNLKSLQLHTNSLS 247
L +L+ L LH N +S
Sbjct: 97 TFDGLKSLRLLSLHGNDIS 115
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 186 TSLQEISLPGNQLSGAISDGV-GNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTN 244
T L ++SL NQ+ ++ DGV LT L++L L NK L KLT LK L L TN
Sbjct: 52 TQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTN 110
Query: 245 SL 246
L
Sbjct: 111 QL 112
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 54/132 (40%)
Query: 117 VSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSG 176
VSH + S T + +++ +L+ ++N S+L + GFN +S
Sbjct: 4 VSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63
Query: 177 SIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNL 236
P+ L+ ++L N+LS T+L+ L L SN + K NL
Sbjct: 64 LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123
Query: 237 KSLQLHTNSLSG 248
+L L N LS
Sbjct: 124 ITLDLSHNGLSS 135
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 92/236 (38%), Gaps = 54/236 (22%)
Query: 330 LESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNL 389
L+ L +L++ +N+ I + G NL+ L L F ++ S A L
Sbjct: 328 LKCLEHLNMEDNDIPGIKS--NMFTGLINLKYLSLSNSF--TSLRTLTNETFVSLAHSPL 383
Query: 390 LVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPG--WLGNMPNLFYIDLSYNSI 447
+L + +I + L L+VLDLG N+I + G W G + N+F I LSYN
Sbjct: 384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG-LENIFEIYLSYNKY 442
Query: 448 SGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAI---Y 504
LQ +N F+L P++
Sbjct: 443 ---------------LQLTRNS---------------------------FALVPSLQRLM 460
Query: 505 LRNNSLNG--SIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNL 558
LR +L S P L+ L +LDLS NN + D + L LE LDL NNL
Sbjct: 461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 516
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 126/516 (24%), Positives = 191/516 (37%), Gaps = 112/516 (21%)
Query: 110 ENLITLNVSHNMFSGS----------IPSFTSWNNK------------SLSSLKILDFSY 147
+NLITL++SHN S + + NNK + SSLK L+ S
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180
Query: 148 NDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDIS---AATSLQEISLPGNQLSGAISD 204
N P +L L S+ + + A TS++ +SL +QLS +
Sbjct: 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240
Query: 205 GVGNL--TSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMXXXXXXX 262
L T+L+MLDL N + + L L+ L N++ SL
Sbjct: 241 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRY 300
Query: 263 XXXXXXXFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQ 322
+ +S L +L ID + K L + + N I G
Sbjct: 301 LNLKRSFTKQSIS------LASLPKID----------DFSFQWLKCLEHLNMEDNDIPGI 344
Query: 323 ISPEILALESLSYLSITNN--NFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRA 380
S L +L YLS++N+ + +T + + L +L L K +
Sbjct: 345 KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISK--------- 395
Query: 381 ISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPG--WLGNMPNLF 438
I S AF +WL L+VLDLG N+I + G W G + N+F
Sbjct: 396 IESDAF------------------SWLGH---LEVLDLGLNEIGQELTGQEWRG-LENIF 433
Query: 439 YIDLSYNSISGEFPKEFC--------GLRALALQEVKNRADGSQLQLPLFVPK------- 483
I LSYN F LR +AL+ V + Q L +
Sbjct: 434 EIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA 493
Query: 484 ----------TKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNN 533
K+ + + Q+N L A ++ + G I G L LH+L+L N
Sbjct: 494 NINDDMLEGLEKLEILDLQHNNL-----ARLWKHANPGGPIYFLKG-LSHLHILNLESNG 547
Query: 534 FSGEIPDQI-SQLTNLEGLDLSENNLHGEIPLSIID 568
F EIP ++ L L+ +DL NNL +P S+ +
Sbjct: 548 F-DEIPVEVFKDLFELKIIDLGLNNL-NTLPASVFN 581
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 394 IGDCEIKG--QIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEF 451
I DC KG +IPT L + + + L N I PG L IDLS N IS
Sbjct: 15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA 72
Query: 452 PKEFCGLRAL 461
P F GLR+L
Sbjct: 73 PDAFQGLRSL 82
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 78/210 (37%), Gaps = 13/210 (6%)
Query: 90 LDLSYNXXXXXXXXXXXXXAENLITLNVSHNMFSG-SIPSFTSWNNKSLSSLKILDFSYN 148
LDLS+N NL +L +SHN + S +F + +L+ LD S N
Sbjct: 44 LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVP-----VPNLRYLDLSSN 98
Query: 149 DFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSG----AISD 204
+ L+ N++ + LQ++ L NQ+S I D
Sbjct: 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKD 158
Query: 205 GVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNL--KSLQLHTNSLSGFLPQSLMXXXXXXX 262
G L L +LDL SNK L D+ KL L LH N L +
Sbjct: 159 G-NKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYR 217
Query: 263 XXXXXXXFRGDLSAYNFSTLHNLHTIDLGN 292
F+ DL + LHN+ ++D N
Sbjct: 218 QLSSVMDFQEDLYCMHSKKLHNIFSLDFFN 247
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 394 IGDCEIKG--QIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEF 451
I DC KG +IPT L + + + L N I PG L IDLS N IS
Sbjct: 15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA 72
Query: 452 PKEFCGLRAL 461
P F GLR+L
Sbjct: 73 PDAFQGLRSL 82
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 62/160 (38%), Gaps = 7/160 (4%)
Query: 170 GFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQD 229
G + ++P+ I+ EI L N + L +DL +N+ S L P
Sbjct: 22 GLTEIPTNLPETIT------EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDA 75
Query: 230 IGKLTNLKSLQLHTNSLSGFLPQSLMXXXXXXXXXXXXXXFRGDLSAYNFSTLHNLHTID 289
L +L SL L+ N ++ LP+SL L F LHNL+ +
Sbjct: 76 FQGLRSLNSLVLYGNKITE-LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLS 134
Query: 290 LGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILA 329
L +N T + + + + L++N + + LA
Sbjct: 135 LYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLA 174
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 54/132 (40%)
Query: 117 VSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSG 176
VSH + S T + +++ +L+ ++N S+L + GFN +S
Sbjct: 9 VSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 68
Query: 177 SIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNL 236
P+ L+ ++L N+LS T+L+ L L SN + K NL
Sbjct: 69 LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 128
Query: 237 KSLQLHTNSLSG 248
+L L N LS
Sbjct: 129 ITLDLSHNGLSS 140
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 92/236 (38%), Gaps = 54/236 (22%)
Query: 330 LESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNL 389
L+ L +L++ +N+ I + G NL+ L L F ++ S A L
Sbjct: 333 LKCLEHLNMEDNDIPGIKS--NMFTGLINLKYLSLSNSF--TSLRTLTNETFVSLAHSPL 388
Query: 390 LVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPG--WLGNMPNLFYIDLSYNSI 447
+L + +I + L L+VLDLG N+I + G W G + N+F I LSYN
Sbjct: 389 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG-LENIFEIYLSYNKY 447
Query: 448 SGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAI---Y 504
LQ +N F+L P++
Sbjct: 448 ---------------LQLTRNS---------------------------FALVPSLQRLM 465
Query: 505 LRNNSLNG--SIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNL 558
LR +L S P L+ L +LDLS NN + D + L LE LDL NNL
Sbjct: 466 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 521
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 125/516 (24%), Positives = 191/516 (37%), Gaps = 112/516 (21%)
Query: 110 ENLITLNVSHNMFSGS----------IPSFTSWNNK------------SLSSLKILDFSY 147
+NLITL++SHN S + + NNK + SSLK L+ S
Sbjct: 126 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 185
Query: 148 NDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDIS---AATSLQEISLPGNQLSGAISD 204
N P +L L S+ + + A TS++ +SL +QLS +
Sbjct: 186 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 245
Query: 205 GVGNL--TSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMXXXXXXX 262
L T+L+MLDL N + + L L+ L N++ SL
Sbjct: 246 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRY 305
Query: 263 XXXXXXXFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQ 322
+ +S L +L ID + K L + + N I G
Sbjct: 306 LNLKRSFTKQSIS------LASLPKID----------DFSFQWLKCLEHLNMEDNDIPGI 349
Query: 323 ISPEILALESLSYLSITNN--NFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRA 380
S L +L YLS++N+ + +T + + L +L L K +
Sbjct: 350 KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISK--------- 400
Query: 381 ISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPG--WLGNMPNLF 438
I S AF +WL L+VLDLG N+I + G W G + N+F
Sbjct: 401 IESDAF------------------SWLGH---LEVLDLGLNEIGQELTGQEWRG-LENIF 438
Query: 439 YIDLSYNSISGEFPKEFC--------GLRALALQEVKNRADGSQ---------------- 474
I LSYN F LR +AL+ V + Q
Sbjct: 439 EIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA 498
Query: 475 -LQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNN 533
+ + K+ + + Q+N L A ++ + G I G L LH+L+L N
Sbjct: 499 NINDDMLEGLEKLEILDLQHNNL-----ARLWKHANPGGPIYFLKG-LSHLHILNLESNG 552
Query: 534 FSGEIPDQI-SQLTNLEGLDLSENNLHGEIPLSIID 568
F EIP ++ L L+ +DL NNL +P S+ +
Sbjct: 553 F-DEIPVEVFKDLFELKIIDLGLNNL-NTLPASVFN 586
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 54/132 (40%)
Query: 117 VSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSG 176
VSH + S T + +++ +L+ ++N S+L + GFN +S
Sbjct: 14 VSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 73
Query: 177 SIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNL 236
P+ L+ ++L N+LS T+L+ L L SN + K NL
Sbjct: 74 LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 133
Query: 237 KSLQLHTNSLSG 248
+L L N LS
Sbjct: 134 ITLDLSHNGLSS 145
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 92/236 (38%), Gaps = 54/236 (22%)
Query: 330 LESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNL 389
L+ L +L++ +N+ I + G NL+ L L F ++ S A L
Sbjct: 338 LKCLEHLNMEDNDIPGIKS--NMFTGLINLKYLSLSNSF--TSLRTLTNETFVSLAHSPL 393
Query: 390 LVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPG--WLGNMPNLFYIDLSYNSI 447
+L + +I + L L+VLDLG N+I + G W G + N+F I LSYN
Sbjct: 394 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG-LENIFEIYLSYNKY 452
Query: 448 SGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAI---Y 504
LQ +N F+L P++
Sbjct: 453 ---------------LQLTRNS---------------------------FALVPSLQRLM 470
Query: 505 LRNNSLNG--SIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNL 558
LR +L S P L+ L +LDLS NN + D + L LE LDL NNL
Sbjct: 471 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 526
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 125/516 (24%), Positives = 191/516 (37%), Gaps = 112/516 (21%)
Query: 110 ENLITLNVSHNMFSGS----------IPSFTSWNNK------------SLSSLKILDFSY 147
+NLITL++SHN S + + NNK + SSLK L+ S
Sbjct: 131 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 190
Query: 148 NDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDIS---AATSLQEISLPGNQLSGAISD 204
N P +L L S+ + + A TS++ +SL +QLS +
Sbjct: 191 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 250
Query: 205 GVGNL--TSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMXXXXXXX 262
L T+L+MLDL N + + L L+ L N++ SL
Sbjct: 251 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRY 310
Query: 263 XXXXXXXFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQ 322
+ +S L +L ID + K L + + N I G
Sbjct: 311 LNLKRSFTKQSIS------LASLPKID----------DFSFQWLKCLEHLNMEDNDIPGI 354
Query: 323 ISPEILALESLSYLSITNN--NFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRA 380
S L +L YLS++N+ + +T + + L +L L K +
Sbjct: 355 KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISK--------- 405
Query: 381 ISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPG--WLGNMPNLF 438
I S AF +WL L+VLDLG N+I + G W G + N+F
Sbjct: 406 IESDAF------------------SWLGH---LEVLDLGLNEIGQELTGQEWRG-LENIF 443
Query: 439 YIDLSYNSISGEFPKEFC--------GLRALALQEVKNRADGSQ---------------- 474
I LSYN F LR +AL+ V + Q
Sbjct: 444 EIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA 503
Query: 475 -LQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNN 533
+ + K+ + + Q+N L A ++ + G I G L LH+L+L N
Sbjct: 504 NINDDMLEGLEKLEILDLQHNNL-----ARLWKHANPGGPIYFLKG-LSHLHILNLESNG 557
Query: 534 FSGEIPDQI-SQLTNLEGLDLSENNLHGEIPLSIID 568
F EIP ++ L L+ +DL NNL +P S+ +
Sbjct: 558 F-DEIPVEVFKDLFELKIIDLGLNNL-NTLPASVFN 591
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 177 SIPDDI-SAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTN 235
S+PD + T+L ++L NQL LT+L+ LDL N+ L KLT
Sbjct: 123 SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQ 182
Query: 236 LKSLQLHTNSLS 247
LK L+L+ N L
Sbjct: 183 LKDLRLYQNQLK 194
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 177 SIPDDI-SAATSLQEISLPGNQLSGAISDGV-GNLTSLSMLDLQSNKFSGLIPQDIGKLT 234
S+P+ + T+L+E+ L NQL ++ DGV LT+L+ L+L N+ L KLT
Sbjct: 99 SLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLT 157
Query: 235 NLKSLQLHTNSLSGFLPQSL 254
NL L L N L LP+ +
Sbjct: 158 NLTELDLSYNQLQS-LPEGV 176
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 66/183 (36%), Gaps = 28/183 (15%)
Query: 174 LSGSIPDDISAATSLQEIS---LPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDI 230
L G+ DISA L ++ L GNQL + LT+L L L N+ L
Sbjct: 70 LGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVF 129
Query: 231 GKLTNLKSLQLHTNSLSGFLPQSLMXXXXXXXXXXXXXXFRGDLSAYNFSTLHNLHTIDL 290
KLTNL L L N L LP+ + F L NL +DL
Sbjct: 130 DKLTNLTYLNLAHNQLQS-LPKGV------------------------FDKLTNLTELDL 164
Query: 291 GNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAI 350
N L +RL +N++ L SL Y+ + +N + I
Sbjct: 165 SYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGI 224
Query: 351 RIL 353
R L
Sbjct: 225 RYL 227
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 81/198 (40%), Gaps = 38/198 (19%)
Query: 408 ARLKKLQVLDLGSNQITGSIPGWLGN------------MPNLFYIDLSYNSISG-EFPKE 454
A LKK V D + SI + N +PN+ Y+ L N + KE
Sbjct: 24 ANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKE 83
Query: 455 FCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNN--SLNG 512
L L L G+QLQ +L N ++KL +L + + N SL
Sbjct: 84 LTNLTYLILT-------GNQLQ----------SLPNGVFDKLTNLKELVLVENQLQSLPD 126
Query: 513 SIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIID-LHF 571
+ ++ NL +L++ L + + D+ LTNL LDLS N L +P + D L
Sbjct: 127 GVFDKLTNLTYLNLAHNQLQSLPKGVFDK---LTNLTELDLSYNQLQS-LPEGVFDKLTQ 182
Query: 572 LSSFSVANNDLQGQIPSG 589
L + N L+ +P G
Sbjct: 183 LKDLRLYQNQLKS-VPDG 199
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 135 KSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLP 194
K+LS+L++LD S+N + LP LG+C +L+ F F+ + ++P + +LQ + +
Sbjct: 267 KNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYF-FDNMVTTLPWEFGNLCNLQFLGVE 324
Query: 195 GNQLS 199
GN L
Sbjct: 325 GNPLE 329
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 402 QIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEF---CGL 458
++P + L L+VLDL N++T S+P LG+ L Y ++++ P EF C L
Sbjct: 261 ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYF-FDNMVTTLPWEFGNLCNL 318
Query: 459 RALALQ 464
+ L ++
Sbjct: 319 QFLGVE 324
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 97/400 (24%), Positives = 153/400 (38%), Gaps = 44/400 (11%)
Query: 203 SDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQS--LMXXXXX 260
+ NL +L +LDL S+K L P L +L L+L+ LS + +
Sbjct: 66 KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKAL 125
Query: 261 XXXXXXXXXFRGDLSAYNFSTLHNLHTIDLGNNN--FTGSFPLTLTSCKVLTAIRLSRNK 318
R +F L++L +ID +N L K L+ L+ N
Sbjct: 126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS 185
Query: 319 IVGQISPEILALES------LSYLSITNNNFS-NITGAIRILMGCKNLRMLLLCKKF--- 368
+ ++S + + L L ++ N ++ +ITG + L+L
Sbjct: 186 LYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA 245
Query: 369 ---FHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITG 425
FH I D +Q + A ++ L + + LK L+VL+L N+I
Sbjct: 246 GFGFHN-IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK 304
Query: 426 SIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEV-KNRADGSQLQLPLFVPKT 484
+ NL ++LSYN + + F GL +A ++ KN Q Q F+ K
Sbjct: 305 IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKL 364
Query: 485 KI------ALYNQQY-----------NKLFSLPPA------IYLRNNSL-NGSIPIEIGN 520
+ AL + NKL +LP I+L N L N I +
Sbjct: 365 QTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLR 424
Query: 521 LKFLHVLDLSLNNFSGEIPDQI-SQLTNLEGLDLSENNLH 559
+ L +L L+ N FS DQ S+ +LE L L EN L
Sbjct: 425 VPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQ 464
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 2/116 (1%)
Query: 138 SSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQ 197
SS++ LD S+ L+ +N ++ + +LQ ++L N
Sbjct: 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL 325
Query: 198 LSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSG--FLP 251
L S L ++ +DLQ N + + Q L L++L L N+L+ F+P
Sbjct: 326 LGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIP 381
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 42/111 (37%), Gaps = 4/111 (3%)
Query: 115 LNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYL 174
L++SH G + S S ++L LK+L+ +YN + LQ +N L
Sbjct: 271 LDLSH----GFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326
Query: 175 SGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGL 225
+ + I L N ++ L L LDL+ N + +
Sbjct: 327 GELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI 377
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 66/148 (44%), Gaps = 13/148 (8%)
Query: 86 HLETLDLSYNXXXXXXXXXXXXXAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDF 145
LE LD ++ NLI L++SH + + +F N LSSL++L
Sbjct: 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH---THTRVAFNGIFN-GLSSLEVLKM 452
Query: 146 SYNDFSGQLPPG----LGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGA 201
+ N F P L N + L + LS P ++ +SLQ +++ NQL +
Sbjct: 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS---PTAFNSLSSLQVLNMASNQLK-S 508
Query: 202 ISDGV-GNLTSLSMLDLQSNKFSGLIPQ 228
+ DG+ LTSL + L +N + P+
Sbjct: 509 VPDGIFDRLTSLQKIWLHTNPWDCSCPR 536
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 1/110 (0%)
Query: 136 SLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFR-AGFNYLSGSIPDDISAATSLQEISLP 194
SL +L LD S+ S L+ + AG ++ +PD + +L + L
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478
Query: 195 GNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTN 244
QL +L+SL +L++ SN+ + +LT+L+ + LHTN
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 93/210 (44%), Gaps = 18/210 (8%)
Query: 392 LGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEF 451
L + +C+ GQ PT +LK L+ L SN+ G ++P+L ++DLS N +S +
Sbjct: 309 LELVNCKF-GQFPTL--KLKSLKRLTFTSNK--GGNAFSEVDLPSLEFLDLSRNGLSFKG 363
Query: 452 PKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKL---------FSLPPA 502
+L+ + +G F+ ++ + Q++ L SL
Sbjct: 364 CCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423
Query: 503 IYLRNNSLNGSIPIE--IGNLKFLHVLDLSLNNFSGE-IPDQISQLTNLEGLDLSENNLH 559
IYL + + + L L VL ++ N+F +PD ++L NL LDLS+ L
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483
Query: 560 GEIPLSIIDLHFLSSFSVANNDLQGQIPSG 589
P + L L ++A+N L+ +P G
Sbjct: 484 QLSPTAFNSLSSLQVLNMASNQLKS-VPDG 512
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 9/127 (7%)
Query: 328 LALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEA-IPDENQRAISSYAF 386
L+L +L YL I++ + I G +L +L + F E +PD
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGI--FNGLSSLEVLKMAGNSFQENFLPD------IFTEL 469
Query: 387 QNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNS 446
+NL L + C+++ PT L LQVL++ SNQ+ G + +L I L N
Sbjct: 470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529
Query: 447 ISGEFPK 453
P+
Sbjct: 530 WDCSCPR 536
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 518 IGNLKFLHVLDLSLNNF-SGEIPDQISQLTNLEGLDLSENNLH 559
IG+LK L L+++ N S ++P+ S LTNLE LDLS N +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 120/503 (23%), Positives = 206/503 (40%), Gaps = 69/503 (13%)
Query: 126 IPSFTSWNNKSLSSLKILD-FSYNDFSGQLPPGLGNCSKLQTFR----AGFNYLSGSI-- 178
IPS T + S + LKIL +S+++FS L C +++T G ++LS I
Sbjct: 30 IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILT 88
Query: 179 --------PDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKF-SGLIPQD 229
P S TSL+ + +L+ S +G L +L L++ N S +P
Sbjct: 89 GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY 148
Query: 230 IGKLTNLKSLQLHTNSLSGFLPQSLMXXXXXXXXXXXXXXFRGDLSAYNFSTLHN----- 284
LTNL + L N + Q++ D+S + +
Sbjct: 149 FSNLTNLVHVDLSYNYI-----QTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG 203
Query: 285 --LHTIDL-GNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILA---LESLSYLSI 338
LH + L GN N + L + L RL + + + EI +E L ++I
Sbjct: 204 IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTI 263
Query: 339 T------NNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVL 392
N+FS+ L + + + K+ E +P + +Q+L
Sbjct: 264 DEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL-EDVPKH-------FKWQSL--- 312
Query: 393 GIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFP 452
I C++K Q PT L L+ L L N+ GSI +P+L Y+DLS N++S
Sbjct: 313 SIIRCQLK-QFPT--LDLPFLKSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGC 367
Query: 453 KEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKL---------FSLPPAI 503
+ L +L+ + +G+ + F+ ++ + Q++ L SL +
Sbjct: 368 CSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL 427
Query: 504 YLRNNSLNGSIPIE--IGNLKFLHVLDLSLNNFS-GEIPDQISQLTNLEGLDLSENNLHG 560
YL + N I + L L+ L ++ N+F + + + TNL LDLS+ L
Sbjct: 428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE- 486
Query: 561 EIPLSIID-LHFLSSFSVANNDL 582
+I + D LH L ++++N+L
Sbjct: 487 QISWGVFDTLHRLQLLNMSHNNL 509
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 63/135 (46%), Gaps = 19/135 (14%)
Query: 309 LTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKF 368
L + LS N+I +SP + L L LS+ N N+ G I C L + F
Sbjct: 65 LKELHLSHNQI-SDLSP-LKDLTKLEELSVNRNRLKNLNG---IPSAC-------LSRLF 112
Query: 369 FHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIP 428
+E + S +NL +L I + ++K + L L KL+VLDL N+IT +
Sbjct: 113 LDN---NELRDTDSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT-- 165
Query: 429 GWLGNMPNLFYIDLS 443
G L + + +IDL+
Sbjct: 166 GGLTRLKKVNWIDLT 180
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 65/287 (22%), Positives = 111/287 (38%), Gaps = 13/287 (4%)
Query: 187 SLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSL 246
S++ I+L ++ S S T + LDL + +GL P I + +LK L L+ NS
Sbjct: 254 SVESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNGL-PSGIEGMNSLKKLVLNANSF 312
Query: 247 SGFLPQSLMXXXXXXXXXXXXXXFRGDLSAYNFSTLHNLHTIDLGNNNFTGS--FPLTLT 304
+ + DL L NL +DL +++ S L L
Sbjct: 313 DQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLK 372
Query: 305 SCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLL 364
+ + L + LS N+ +G L L + + ++ LR+L L
Sbjct: 373 NLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHL-HVKAPHSPFQNLHLLRVLNL 431
Query: 365 CKKFFHEAIPDENQRAISSYAFQNLLVLGI-GDCEIKGQI--PTWLARLKKLQVLDLGSN 421
H + NQ ++ Q+L L + G+ G I L + L++L L S
Sbjct: 432 S----HCLLDTSNQHLLA--GLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSC 485
Query: 422 QITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKN 468
+ + N+ ++DLS+NS++G+ L+ L L N
Sbjct: 486 NLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGLYLNMASN 532
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 64/146 (43%), Gaps = 12/146 (8%)
Query: 407 LARLKKLQVLDLGSNQI-TGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQE 465
+ +L L+ L++ N I + +P + N+ NL ++DLSYN I + + + +
Sbjct: 119 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI-----------QTITVND 167
Query: 466 VKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLH 525
++ + Q+ L L + I Q + L N + + + + NL LH
Sbjct: 168 LQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLH 227
Query: 526 VLDLSLNNFSGEIPDQISQLTNLEGL 551
V L L F E +I + + +EGL
Sbjct: 228 VHRLILGEFKDERNLEIFEPSIMEGL 253
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 120/503 (23%), Positives = 206/503 (40%), Gaps = 69/503 (13%)
Query: 126 IPSFTSWNNKSLSSLKILD-FSYNDFSGQLPPGLGNCSKLQTFR----AGFNYLSGSI-- 178
IPS T + S + LKIL +S+++FS L C +++T G ++LS I
Sbjct: 25 IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILT 83
Query: 179 --------PDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKF-SGLIPQD 229
P S TSL+ + +L+ S +G L +L L++ N S +P
Sbjct: 84 GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY 143
Query: 230 IGKLTNLKSLQLHTNSLSGFLPQSLMXXXXXXXXXXXXXXFRGDLSAYNFSTLHN----- 284
LTNL + L N + Q++ D+S + +
Sbjct: 144 FSNLTNLVHVDLSYNYI-----QTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG 198
Query: 285 --LHTIDL-GNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILA---LESLSYLSI 338
LH + L GN N + L + L RL + + + EI +E L ++I
Sbjct: 199 IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTI 258
Query: 339 TN------NNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVL 392
N+FS+ L + + + K+ E +P + +Q+L
Sbjct: 259 DEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL-EDVPKH-------FKWQSL--- 307
Query: 393 GIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFP 452
I C++K Q PT L L+ L L N+ GSI +P+L Y+DLS N++S
Sbjct: 308 SIIRCQLK-QFPT--LDLPFLKSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGC 362
Query: 453 KEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKL---------FSLPPAI 503
+ L +L+ + +G+ + F+ ++ + Q++ L SL +
Sbjct: 363 CSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL 422
Query: 504 YLRNNSLNGSIPIE--IGNLKFLHVLDLSLNNFS-GEIPDQISQLTNLEGLDLSENNLHG 560
YL + N I + L L+ L ++ N+F + + + TNL LDLS+ L
Sbjct: 423 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE- 481
Query: 561 EIPLSIID-LHFLSSFSVANNDL 582
+I + D LH L ++++N+L
Sbjct: 482 QISWGVFDTLHRLQLLNMSHNNL 504
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%)
Query: 172 NYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIG 231
N L+G P+ A+ +QE+ L N++ + L L L+L N+ S ++P
Sbjct: 64 NQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFE 123
Query: 232 KLTNLKSLQLHTN 244
L +L SL L +N
Sbjct: 124 HLNSLTSLNLASN 136
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 27/102 (26%)
Query: 177 SIPDDISAATSLQEISLPGNQLSGAISDGV-GNLTSLSMLDLQSNKFSGLIPQ------- 228
IP DI T+ E+ L N+L SDG+ G L L L+L+ N+ +G+ P
Sbjct: 22 EIPRDIPLHTT--ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79
Query: 229 ---------DIGKLTN--------LKSLQLHTNSLSGFLPQS 253
I +++N LK+L L+ N +S +P S
Sbjct: 80 IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGS 121
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 114 TLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPG-LGNCSKLQTFRAGFN 172
TL++SHN S+P ++L +L +LD S+N + LP G L +LQ N
Sbjct: 81 TLDLSHNQLQ-SLPLL----GQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGN 134
Query: 173 YLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKF 222
L P ++ L+++SL N L+ + + L +L L LQ N
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 114 TLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPG-LGNCSKLQTFRAGFN 172
TL++SHN S+P ++L +L +LD S+N + LP G L +LQ N
Sbjct: 81 TLDLSHNQLQ-SLPLL----GQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGN 134
Query: 173 YLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKF 222
L P ++ L+++SL N L+ + + L +L L LQ N
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 63/155 (40%), Gaps = 25/155 (16%)
Query: 439 YIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFS 498
Y+DLS NSI+ F L+ L +V+ + G ++ F + + + YN+
Sbjct: 34 YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ 93
Query: 499 LPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEI--PDQISQLTNLEGLDLSEN 556
L + NG L L VL L+ N G + + LT+LE L L +N
Sbjct: 94 LETGAF------NG--------LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139
Query: 557 NLHGEIPLS---------IIDLHFLSSFSVANNDL 582
N+ P S ++DL F S+ DL
Sbjct: 140 NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDL 174
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 35/70 (50%)
Query: 183 SAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLH 242
S T L++++L N+++ + LT L L L +N+ + +LT+L+ + LH
Sbjct: 296 SHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 355
Query: 243 TNSLSGFLPQ 252
TN P+
Sbjct: 356 TNPWDCSCPR 365
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 114 TLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPG-LGNCSKLQTFRAGFN 172
TL++SHN S+P ++L +L +LD S+N + LP G L +LQ N
Sbjct: 81 TLDLSHNQLQ-SLPLL----GQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGN 134
Query: 173 YLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKF 222
L P ++ L+++SL N L+ + + L +L L LQ N
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 114 TLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPG-LGNCSKLQTFRAGFN 172
TL++SHN S+P ++L +L +LD S+N + LP G L +LQ N
Sbjct: 82 TLDLSHNQLQ-SLPLL----GQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGN 135
Query: 173 YLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKF 222
L P ++ L+++SL N L+ + + L +L L LQ N
Sbjct: 136 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 185
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 15/122 (12%)
Query: 133 NNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAA---TSLQ 189
N L+SLKI + D S L N S+L G N +S DI+A T L+
Sbjct: 219 NXTRLNSLKIGNNKITDLSP-----LANLSQLTWLEIGTNQIS-----DINAVKDLTKLK 268
Query: 190 EISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGF 249
+++ NQ+S + NL+ L+ L L +N+ + IG LTNL +L L N ++
Sbjct: 269 XLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDI 326
Query: 250 LP 251
P
Sbjct: 327 RP 328
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 78/293 (26%), Positives = 123/293 (41%), Gaps = 52/293 (17%)
Query: 182 ISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQL 241
I T+L+ ++L GNQ++ + NL L+ L + +NK + + + LTNL+ L L
Sbjct: 62 IEYLTNLEYLNLNGNQITDI--SPLSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYL 117
Query: 242 HTNSLSGFLPQSLMXXXXXXXXXXXXXXFRGDLSAYNFSTLHNLHTIDLGN-NNFTGSFP 300
+ +++S P + + + N HNL DL +N TG
Sbjct: 118 NEDNISDISPLANLTKXY----------------SLNLGANHNLS--DLSPLSNXTGLNY 159
Query: 301 LTLTSCKV-----------LTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGA 349
LT+T KV L ++ L+ N+I ISP + +L SL Y + N ++IT
Sbjct: 160 LTVTESKVKDVTPIANLTDLYSLSLNYNQI-EDISP-LASLTSLHYFTAYVNQITDITP- 216
Query: 350 IRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLAR 409
+ L L + + P N L L IG +I +
Sbjct: 217 ---VANXTRLNSLKIGNNKITDLSPLAN--------LSQLTWLEIGTNQISD--INAVKD 263
Query: 410 LKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALA 462
L KL+ L++GSNQI S L N+ L + L+ N + E + GL L
Sbjct: 264 LTKLKXLNVGSNQI--SDISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLT 314
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 114 TLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPG-LGNCSKLQTFRAGFN 172
TL++SHN S+P ++L +L +LD S+N + LP G L +LQ N
Sbjct: 81 TLDLSHNQLQ-SLPLL----GQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGN 134
Query: 173 YLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKF 222
L P ++ L+++SL N L+ + + L +L L LQ N
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 114 TLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPG-LGNCSKLQTFRAGFN 172
TL++SHN S+P ++L +L +LD S+N + LP G L +LQ N
Sbjct: 81 TLDLSHNQLQ-SLPLL----GQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGN 134
Query: 173 YLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKF 222
L P ++ L+++SL N L+ + + L +L L LQ N
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 63/155 (40%), Gaps = 25/155 (16%)
Query: 439 YIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFS 498
Y+DLS NSI+ F L+ L +V+ + G ++ F + + + YN+
Sbjct: 34 YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ 93
Query: 499 LPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEI--PDQISQLTNLEGLDLSEN 556
L + NG L L VL L+ N G + + LT+LE L L +N
Sbjct: 94 LETGAF------NG--------LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139
Query: 557 NLHGEIPLS---------IIDLHFLSSFSVANNDL 582
N+ P S ++DL F S+ DL
Sbjct: 140 NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDL 174
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 43/109 (39%)
Query: 138 SSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQ 197
S +K D S + L + + L+ N ++ + T L +++L N
Sbjct: 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF 334
Query: 198 LSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSL 246
L S NL L +LDL N L Q L NLK L L TN L
Sbjct: 335 LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL 383
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 73/175 (41%), Gaps = 18/175 (10%)
Query: 278 NFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLS 337
+F L NLHT+ L NN + P L + LS+N++ + PE + ++L L
Sbjct: 71 DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL--KELPEKMP-KTLQELR 127
Query: 338 ITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLG---I 394
+ N + + + + G + ++ L + I + AFQ + L I
Sbjct: 128 VHENEITKVRKS--VFNGLNQMIVVELGTNPLKSS-------GIENGAFQGMKKLSYIRI 178
Query: 395 GDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISG 449
D I IP L L L L N+IT L + NL + LS+NSIS
Sbjct: 179 ADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 230
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 89/246 (36%), Gaps = 18/246 (7%)
Query: 213 SMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMXXXXXXXXXXXXXXFRG 272
++LDLQ+NK + + D L NL +L L N +S P + +
Sbjct: 55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK- 113
Query: 273 DLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRN--KIVGQISPEILAL 330
+L TL L + N T + + L N K G + +
Sbjct: 114 ELPEKMPKTLQELRVHE---NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170
Query: 331 ESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLL 390
+ LSY+ I + N + I + + +L + K A S NL
Sbjct: 171 KKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITK-----------VDAASLKGLNNLA 219
Query: 391 VLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGE 450
LG+ I LA L+ L L +N++ +PG L + + + L N+IS
Sbjct: 220 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAI 278
Query: 451 FPKEFC 456
+FC
Sbjct: 279 GSNDFC 284
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Query: 415 VLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALA-LQEVKNRADGS 473
+LDL +N+IT G N+ NL + L N IS P F L L L KN+
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-- 113
Query: 474 QLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIG 519
+LP +PKT L + N++ + +++ N LN I +E+G
Sbjct: 114 --ELPEKMPKTLQELRVHE-NEITKVRKSVF---NGLNQMIVVELG 153
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 73/175 (41%), Gaps = 18/175 (10%)
Query: 278 NFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLS 337
+F L NLHT+ L NN + P L + LS+N++ + PE + ++L L
Sbjct: 71 DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL--KELPEKMP-KTLQELR 127
Query: 338 ITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLG---I 394
+ N + + + + G + ++ L + I + AFQ + L I
Sbjct: 128 VHENEITKVRKS--VFNGLNQMIVVELGTNPLKSS-------GIENGAFQGMKKLSYIRI 178
Query: 395 GDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISG 449
D I IP L L L L N+IT L + NL + LS+NSIS
Sbjct: 179 ADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 230
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 89/246 (36%), Gaps = 18/246 (7%)
Query: 213 SMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMXXXXXXXXXXXXXXFRG 272
++LDLQ+NK + + D L NL +L L N +S P + +
Sbjct: 55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK- 113
Query: 273 DLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRN--KIVGQISPEILAL 330
+L TL L + N T + + L N K G + +
Sbjct: 114 ELPEKMPKTLQELRVHE---NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170
Query: 331 ESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLL 390
+ LSY+ I + N + I + + +L + K A S NL
Sbjct: 171 KKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITK-----------VDAASLKGLNNLA 219
Query: 391 VLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGE 450
LG+ I LA L+ L L +N++ +PG L + + + L N+IS
Sbjct: 220 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAI 278
Query: 451 FPKEFC 456
+FC
Sbjct: 279 GSNDFC 284
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Query: 415 VLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALA-LQEVKNRADGS 473
+LDL +N+IT G N+ NL + L N IS P F L L L KN+
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-- 113
Query: 474 QLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIG 519
+LP +PKT L + N++ + +++ N LN I +E+G
Sbjct: 114 --ELPEKMPKTLQELRVHE-NEITKVRKSVF---NGLNQMIVVELG 153
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 177 SIPDDI-SAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTN 235
S+PD + T+L + L NQL LT+L+ LDL +N+ L KLT
Sbjct: 123 SLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQ 182
Query: 236 LKSLQLHTNSLS 247
LK L L+ N L
Sbjct: 183 LKQLSLNDNQLK 194
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 177 SIPDDI-SAATSLQEISLPGNQLSGAISDGV-GNLTSLSMLDLQSNKFSGLIPQDIGKLT 234
S+P+ + T+L+E+ L NQL ++ DGV LT+L+ L L N+ L KLT
Sbjct: 99 SLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLT 157
Query: 235 NLKSLQLHTNSLSGFLPQSL 254
NL L L N L LP+ +
Sbjct: 158 NLTRLDLDNNQLQS-LPEGV 176
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 64/171 (37%), Gaps = 28/171 (16%)
Query: 174 LSGSIPDDISAATSLQEIS---LPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDI 230
L G+ DISA L ++ L GNQL + LT+L L L N+ L
Sbjct: 70 LGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVF 129
Query: 231 GKLTNLKSLQLHTNSLSGFLPQSLMXXXXXXXXXXXXXXFRGDLSAYNFSTLHNLHTIDL 290
KLTNL L L+ N L LP+ + F L NL +DL
Sbjct: 130 DKLTNLTYLYLYHNQLQS-LPKGV------------------------FDKLTNLTRLDL 164
Query: 291 GNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNN 341
NN L + L+ N++ L SL+++ + NN
Sbjct: 165 DNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNN 215
>pdb|4FR0|A Chain A, Arsm Arsenic(Iii) S-Adenosylmethionine Methyltransferase
With Sam
pdb|4FS8|A Chain A, The Structure Of An As(Iii) S-Adenosylmethionine
Methyltransferase: Insights Into The Mechanism Of
Arsenic Biotransformation
pdb|4FSD|A Chain A, Arsm Arsenic(Iii) S-Adenosylmethionine Methyltransferase
With As(Iii)
Length = 383
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 2/86 (2%)
Query: 286 HTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSN 345
H D S L ++CK+ A+ S KI+ I+ E+ LE T +
Sbjct: 24 HVADYYGKTLQSSADLKTSACKLAAAVPESHRKILADIADEV--LEKFYGCGSTLPADGS 81
Query: 346 ITGAIRILMGCKNLRMLLLCKKFFHE 371
+ GA + +GC R + L K E
Sbjct: 82 LEGATVLDLGCGTGRDVYLASKLVGE 107
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 188 LQEISLPGNQLSGAISDGV-GNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSL 246
L+E+ L NQL GA+ GV +LT L++LDL +N+ + L +L +LK L + N L
Sbjct: 66 LKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL 124
Query: 247 S 247
+
Sbjct: 125 T 125
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 518 IGNLKFLHVLDLSLNNF-SGEIPDQISQLTNLEGLDLSENNLHG 560
IG+LK L L+++ N S ++P+ S LTNLE LDLS N +
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 518 IGNLKFLHVLDLSLNNF-SGEIPDQISQLTNLEGLDLSENNLHG 560
IG+LK L L+++ N S ++P+ S LTNLE LDLS N +
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 32.0 bits (71), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 518 IGNLKFLHVLDLSLNNF-SGEIPDQISQLTNLEGLDLSENNLHG 560
IG+LK L L+++ N S ++P+ S LTNLE LDLS N +
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 518 IGNLKFLHVLDLSLNNF-SGEIPDQISQLTNLEGLDLSENNLHG 560
IG+LK L L+++ N S ++P+ S LTNLE LDLS N +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 518 IGNLKFLHVLDLSLNNF-SGEIPDQISQLTNLEGLDLSENNLHG 560
IG+LK L L+++ N S ++P+ S LTNLE LDLS N +
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Query: 158 LGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDL 217
+ N S L+ RA + + DD+ +L+ I N+L G + L L+L
Sbjct: 146 MRNLSHLE-LRANIEEMPSHLFDDLE---NLESIEFGSNKLRQMPRGIFGKMPKLKQLNL 201
Query: 218 QSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQ 252
SN+ + +LT+L+ + LHTN P+
Sbjct: 202 ASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 236
>pdb|2L9L|A Chain A, Nmr Structure Of The Mouse Mfg-e8 C2 Domain
Length = 170
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Query: 373 IPDENQRAISSYAFQNLLVLG----IGDCEIKGQIPTWLAR---LKKLQVLDLGS-NQIT 424
IPD A SSY NL G +G + +G+I W A+ K+ +DLG+ Q+T
Sbjct: 18 IPDSQMSASSSYKTWNLRAFGWYPHLGRLDNQGKINAWTAQSNSAKEWLQVDLGTQRQVT 77
Query: 425 GSI 427
G I
Sbjct: 78 GII 80
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 518 IGNLKFLHVLDLSLNNF-SGEIPDQISQLTNLEGLDLSENNLHG 560
IG+LK L L+++ N S ++P+ S LTNLE LDLS N +
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 90/203 (44%), Gaps = 17/203 (8%)
Query: 392 LGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEF 451
L + +C+ GQ PT +LK L+ L SN+ G ++P+L ++DLS N +S +
Sbjct: 333 LELVNCKF-GQFPTL--KLKSLKRLTFTSNK--GGNAFSEVDLPSLEFLDLSRNGLSFKG 387
Query: 452 PKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKL---------FSLPPA 502
++L+ + +G F+ ++ + Q++ L SL
Sbjct: 388 CCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 447
Query: 503 IYLRNNSLNGSIPIE--IGNLKFLHVLDLSLNNFSGE-IPDQISQLTNLEGLDLSENNLH 559
IYL + + + L L VL ++ N+F +PD ++L NL LDLS+ L
Sbjct: 448 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 507
Query: 560 GEIPLSIIDLHFLSSFSVANNDL 582
P + L L ++++N+
Sbjct: 508 QLSPTAFNSLSSLQVLNMSHNNF 530
>pdb|1JQB|A Chain A, Alcohol Dehydrogenase From Clostridium Beijerinckii:
Crystal Structure Of Mutant With Enhanced Thermal
Stability
pdb|1JQB|B Chain B, Alcohol Dehydrogenase From Clostridium Beijerinckii:
Crystal Structure Of Mutant With Enhanced Thermal
Stability
pdb|1JQB|C Chain C, Alcohol Dehydrogenase From Clostridium Beijerinckii:
Crystal Structure Of Mutant With Enhanced Thermal
Stability
pdb|1JQB|D Chain D, Alcohol Dehydrogenase From Clostridium Beijerinckii:
Crystal Structure Of Mutant With Enhanced Thermal
Stability
Length = 351
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 512 GSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLD 552
GS PI + KF D+ LN +G I DQ+ +LTN +G+D
Sbjct: 198 GSRPICVEAAKFYGATDI-LNYKNGHIEDQVMKLTNGKGVD 237
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 518 IGNLKFLHVLDLSLNNF-SGEIPDQISQLTNLEGLDLSENNLHG 560
IG+LK L L+++ N S ++P+ S LTNLE LDLS N +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
Query: 135 KSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLP 194
+ LS+L+ L+ + + + P L KL N+LS P LQ++ +
Sbjct: 182 EGLSNLRYLNLAMCNL--REIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMI 239
Query: 195 GNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDI-GKLTNLKSLQLHTN 244
+Q+ + NL SL ++L N + L+P D+ L +L+ + LH N
Sbjct: 240 QSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 68/159 (42%), Gaps = 38/159 (23%)
Query: 411 KKLQVLDLGSNQITG--SIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKN 468
+ L LD+ N +G +P PNL+Y++ S N I + C L +L+E+ N
Sbjct: 277 QSLTFLDVSENIFSGLSELP------PNLYYLNASSNEI-----RSLCDLPP-SLEEL-N 323
Query: 469 RADGSQLQLPLFVPKTK--IALYNQ----------------QYNKLFSLP--PAIY--LR 506
++ ++LP P+ + IA +N +YN L P P LR
Sbjct: 324 VSNNKLIELPALPPRLERLIASFNHLAEVPELPQNLKQLHVEYNPLREFPDIPESVEDLR 383
Query: 507 NNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQL 545
NS +P NLK LHV L F +IP+ + L
Sbjct: 384 MNSHLAEVPELPQNLKQLHVETNPLREF-PDIPESVEDL 421
>pdb|1PED|A Chain A, Bacterial Secondary Alcohol Dehydrogenase (Apo-Form)
pdb|1PED|B Chain B, Bacterial Secondary Alcohol Dehydrogenase (Apo-Form)
pdb|1PED|C Chain C, Bacterial Secondary Alcohol Dehydrogenase (Apo-Form)
pdb|1PED|D Chain D, Bacterial Secondary Alcohol Dehydrogenase (Apo-Form)
pdb|1KEV|A Chain A, Structure Of Nadp-Dependent Alcohol Dehydrogenase
pdb|1KEV|B Chain B, Structure Of Nadp-Dependent Alcohol Dehydrogenase
pdb|1KEV|C Chain C, Structure Of Nadp-Dependent Alcohol Dehydrogenase
pdb|1KEV|D Chain D, Structure Of Nadp-Dependent Alcohol Dehydrogenase
Length = 351
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 512 GSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLD 552
GS PI + KF D+ LN +G I DQ+ +LTN +G+D
Sbjct: 198 GSRPICVEAAKFYGATDI-LNYKNGHIVDQVMKLTNGKGVD 237
>pdb|2SQC|A Chain A, Squalene-Hopene Cyclase From Alicyclobacillus
Acidocaldarius
pdb|2SQC|B Chain B, Squalene-Hopene Cyclase From Alicyclobacillus
Acidocaldarius
Length = 631
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 43/104 (41%), Gaps = 13/104 (12%)
Query: 378 QRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNL 437
+RA A LL GD G P W L L++LD+ Q I GW G L
Sbjct: 237 RRAAEIRALDWLLERQAGDGSWGGIQPPWFYALIALKILDM--TQHPAFIKGWEGL--EL 292
Query: 438 FYIDLSYN------SISGEFPKEFCGLRALALQEVKNRADGSQL 475
+ ++L Y SIS P GL LAL+ AD +L
Sbjct: 293 YGVELDYGGWMFQASIS---PVWDTGLAVLALRAAGLPADHDRL 333
>pdb|2B83|A Chain A, A Single Amino Acid Substitution In The Clostridium
Beijerinckii Alcohol Dehydrogenase Is Critical For
Thermostabilization
pdb|2B83|B Chain B, A Single Amino Acid Substitution In The Clostridium
Beijerinckii Alcohol Dehydrogenase Is Critical For
Thermostabilization
pdb|2B83|C Chain C, A Single Amino Acid Substitution In The Clostridium
Beijerinckii Alcohol Dehydrogenase Is Critical For
Thermostabilization
pdb|2B83|D Chain D, A Single Amino Acid Substitution In The Clostridium
Beijerinckii Alcohol Dehydrogenase Is Critical For
Thermostabilization
Length = 351
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 512 GSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLD 552
GS PI + KF D+ LN +G I DQ+ +LTN +G+D
Sbjct: 198 GSRPICVEAAKFYGATDI-LNYKNGHIVDQVMKLTNGKGVD 237
>pdb|3SQC|A Chain A, Squalene-Hopene Cyclase
pdb|3SQC|B Chain B, Squalene-Hopene Cyclase
pdb|3SQC|C Chain C, Squalene-Hopene Cyclase
Length = 631
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 43/104 (41%), Gaps = 13/104 (12%)
Query: 378 QRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNL 437
+RA A LL GD G P W L L++LD+ Q I GW G L
Sbjct: 237 RRAAEIRALDWLLERQAGDGSWGGIQPPWFYALIALKILDM--TQHPAFIKGWEGL--EL 292
Query: 438 FYIDLSYN------SISGEFPKEFCGLRALALQEVKNRADGSQL 475
+ ++L Y SIS P GL LAL+ AD +L
Sbjct: 293 YGVELDYGGWMFQASIS---PVWDTGLAVLALRAAGLPADHDRL 333
>pdb|3FSR|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The
Cofactor Binding Domain Res 153-295 Of T. Brockii Adh By
C. Beijerinckii Adh
pdb|3FSR|B Chain B, Chimera Of Alcohol Dehydrogenase By Exchange Of The
Cofactor Binding Domain Res 153-295 Of T. Brockii Adh By
C. Beijerinckii Adh
pdb|3FSR|C Chain C, Chimera Of Alcohol Dehydrogenase By Exchange Of The
Cofactor Binding Domain Res 153-295 Of T. Brockii Adh By
C. Beijerinckii Adh
pdb|3FSR|D Chain D, Chimera Of Alcohol Dehydrogenase By Exchange Of The
Cofactor Binding Domain Res 153-295 Of T. Brockii Adh By
C. Beijerinckii Adh
Length = 352
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 512 GSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLD 552
GS PI + KF D+ LN +G I DQ+ +LTN +G+D
Sbjct: 198 GSRPICVEAAKFYGATDI-LNYKNGHIVDQVMKLTNGKGVD 237
>pdb|1GSZ|A Chain A, Crystal Structure Of A Squalene Cyclase In Complex With
The Potential Anticholesteremic Drug Ro48-8071
pdb|1GSZ|B Chain B, Crystal Structure Of A Squalene Cyclase In Complex With
The Potential Anticholesteremic Drug Ro48-8071
pdb|1GSZ|C Chain C, Crystal Structure Of A Squalene Cyclase In Complex With
The Potential Anticholesteremic Drug Ro48-8071
pdb|1H35|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H35|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H35|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H36|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H36|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H36|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H37|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H37|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H37|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H39|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H39|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H39|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3A|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3A|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3A|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3B|A Chain A, Squalene-Hopene Cyclase
pdb|1H3B|B Chain B, Squalene-Hopene Cyclase
pdb|1H3B|C Chain C, Squalene-Hopene Cyclase
pdb|1H3C|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3C|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3C|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6H|A Chain A, Squalene-Hopene Cyclase
pdb|1O6H|B Chain B, Squalene-Hopene Cyclase
pdb|1O6H|C Chain C, Squalene-Hopene Cyclase
pdb|1O6Q|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6Q|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6Q|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6R|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6R|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6R|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O79|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O79|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O79|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1UMP|A Chain A, Geometry Of Triterpene Conversion To Pentacarbocyclic
Hopene
pdb|1UMP|B Chain B, Geometry Of Triterpene Conversion To Pentacarbocyclic
Hopene
pdb|1UMP|C Chain C, Geometry Of Triterpene Conversion To Pentacarbocyclic
Hopene
pdb|1SQC|A Chain A, Squalene-Hopene-Cyclase From Alicyclobacillus
Acidocaldarius
Length = 631
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 43/104 (41%), Gaps = 13/104 (12%)
Query: 378 QRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNL 437
+RA A LL GD G P W L L++LD+ Q I GW G L
Sbjct: 237 RRAAEIRALDWLLERQAGDGSWGGIQPPWFYALIALKILDM--TQHPAFIKGWEGL--EL 292
Query: 438 FYIDLSYN------SISGEFPKEFCGLRALALQEVKNRADGSQL 475
+ ++L Y SIS P GL LAL+ AD +L
Sbjct: 293 YGVELDYGGWMFQASIS---PVWDTGLAVLALRAAGLPADHDRL 333
>pdb|3FTN|A Chain A, Q165eS254K DOUBLE MUTANT CHIMERA OF ALCOHOL DEHYDROGENASE
BY EXCHANGE Of The Cofactor Binding Domain Res 153-295
Of T. Brockii Adh By C. Beijerinckii Adh
pdb|3FTN|B Chain B, Q165eS254K DOUBLE MUTANT CHIMERA OF ALCOHOL DEHYDROGENASE
BY EXCHANGE Of The Cofactor Binding Domain Res 153-295
Of T. Brockii Adh By C. Beijerinckii Adh
pdb|3FTN|C Chain C, Q165eS254K DOUBLE MUTANT CHIMERA OF ALCOHOL DEHYDROGENASE
BY EXCHANGE Of The Cofactor Binding Domain Res 153-295
Of T. Brockii Adh By C. Beijerinckii Adh
pdb|3FTN|D Chain D, Q165eS254K DOUBLE MUTANT CHIMERA OF ALCOHOL DEHYDROGENASE
BY EXCHANGE Of The Cofactor Binding Domain Res 153-295
Of T. Brockii Adh By C. Beijerinckii Adh
Length = 352
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 512 GSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLD 552
GS PI + KF D+ LN +G I DQ+ +LTN +G+D
Sbjct: 198 GSRPICVEAAKFYGATDI-LNYKNGHIVDQVMKLTNGKGVD 237
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 41/100 (41%)
Query: 483 KTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQI 542
K +I NQ F + L N ++ P NL L L L N
Sbjct: 41 KNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVF 100
Query: 543 SQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDL 582
+ L+NL LD+SEN + + DL+ L S V +NDL
Sbjct: 101 TGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL 140
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 42/209 (20%), Positives = 76/209 (36%), Gaps = 1/209 (0%)
Query: 138 SSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQ 197
+ ++LD N + L+ N +S P + +L+ + L N+
Sbjct: 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91
Query: 198 LSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMXX 257
L L++L+ LD+ NK L+ L NLKSL++ N L ++
Sbjct: 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSG 150
Query: 258 XXXXXXXXXXXXFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRN 317
+ S LH L + L + N + L + +S
Sbjct: 151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW 210
Query: 318 KIVGQISPEILALESLSYLSITNNNFSNI 346
+ ++P L +L+ LSIT+ N + +
Sbjct: 211 PYLDTMTPNCLYGLNLTSLSITHCNLTAV 239
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 176 GSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTN 235
S+P I T+ Q + L NQ++ +LT L+ L+L N+ + L KLT
Sbjct: 32 ASVPAGI--PTTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTK 89
Query: 236 LKSLQLHTNSLSGF 249
L L LH N L
Sbjct: 90 LTHLALHINQLKSI 103
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 9/111 (8%)
Query: 87 LETLDLSYNXXXXXXXXXXXXXAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFS 146
L+ LD+S N ++L++LN+S N+ + +I +K+LD
Sbjct: 376 LQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP------PRIKVLDLH 429
Query: 147 YNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDI-SAATSLQEISLPGN 196
N +P + LQ N L S+PD I TSLQ+I L N
Sbjct: 430 SNKIKS-IPKQVVKLEALQELNVASNQL-KSVPDGIFDRLTSLQKIWLHTN 478
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 177 SIPDDISAATSLQEISLPGNQLSGAISDGV-GNLTSLSMLDLQSNKFSGLIPQ 228
SIP + +LQE+++ NQL ++ DG+ LTSL + L +N + P+
Sbjct: 435 SIPKQVVKLEALQELNVASNQL-KSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 6/118 (5%)
Query: 137 LSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAAT--SLQEISLP 194
+ SL+ LD S N S G+CS ++ N S + D I ++ + L
Sbjct: 373 MKSLQQLDISQNSVS--YDEKKGDCSWTKSL-LSLNMSSNILTDTIFRCLPPRIKVLDLH 429
Query: 195 GNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQ 252
N++ +I V L +L L++ SN+ + +LT+L+ + LHTN P+
Sbjct: 430 SNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 88/230 (38%), Gaps = 46/230 (20%)
Query: 200 GAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMXXXX 259
G S G +S + L+L+SNK L KLT L L L +N LS
Sbjct: 18 GLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS------------ 65
Query: 260 XXXXXXXXXXFRGDLSAYNFSTLHNLHTIDLGNN-------NFTGSFPLTLTSCKVLTAI 312
F+G S +F T +L +DL N NF G L +
Sbjct: 66 ----------FKGCCSQSDFGTT-SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK 114
Query: 313 RLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEA 372
++S + L+L +L YL I++ + I G +L +L + F E
Sbjct: 115 QMSEFSV-------FLSLRNLIYLDISHTH--TRVAFNGIFNGLSSLEVLKMAGNSFQEN 165
Query: 373 -IPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSN 421
+PD +NL L + C+++ PT L LQVL++ N
Sbjct: 166 FLPD------IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 10/91 (10%)
Query: 374 PDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGN 433
P +N AI+ Q++ L + +I P LA L LQVL L NQIT P L
Sbjct: 102 PLKNVSAIA--GLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAG 155
Query: 434 MPNLFYIDLSYNSISGEFP----KEFCGLRA 460
+ NL Y+ + N ++ P + LRA
Sbjct: 156 LTNLQYLSIGNNQVNDLTPLANLSKLTTLRA 186
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Query: 525 HVLDLSLNNF--SGEIPDQISQLTNLEGLDLSENNLHGE 561
V LSL F SG +PD I QLT LE L L HGE
Sbjct: 82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGS---HGE 117
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 106/275 (38%), Gaps = 52/275 (18%)
Query: 80 SFSFVIHLETLDLSYNXXXXXXXXXXXXXAENLITLNVSHNMFSGSIPSFTSWNNKSLSS 139
+F I L +L+L+YN E + L+ +HN IP+ ++ KS+S
Sbjct: 348 AFGSEIKLASLNLAYNQITEIPANFCGF-TEQVENLSFAHNKLK-YIPNI--FDAKSVSV 403
Query: 140 LKILDFSYNDFSG-------QLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEIS 192
+DFSYN+ L P + + N +S + S + L I+
Sbjct: 404 XSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSIN 463
Query: 193 LPGNQLS----GAISDGVGNLTS---LSMLDLQSNKFSGLIPQDIGKLTNLKSL---QLH 242
L GN L+ ++ D N + L+ +DL+ NK + L D + T L L L
Sbjct: 464 LXGNXLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKL--SDDFRATTLPYLVGIDLS 521
Query: 243 TNSLSGFLPQSLMXXXXXXXXXXXXXXFRGDLSAYNFSTLHNL---HTIDLGNNNFTGSF 299
NS S F Q L N STL + D N +
Sbjct: 522 YNSFSKFPTQPL-----------------------NSSTLKGFGIRNQRDAQGNRTLREW 558
Query: 300 PLTLTSCKVLTAIRLSRN---KIVGQISPEILALE 331
P +T C LT +++ N K+ +I+P I L+
Sbjct: 559 PEGITLCPSLTQLQIGSNDIRKVNEKITPNISVLD 593
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 101/248 (40%), Gaps = 73/248 (29%)
Query: 204 DGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMXXXXXXXX 263
+GV L +L L+L+ N+ + L P + LT + L+L N L
Sbjct: 57 EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK---------------- 98
Query: 264 XXXXXXFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLT-LTSCKVLTAIRLSRNKIVGQ 322
++SA + L ++ T+DL + T PL L++ +VL L N+I
Sbjct: 99 ---------NVSA--IAGLQSIKTLDLTSTQITDVTPLAGLSNLQVL---YLDLNQIT-N 143
Query: 323 ISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAIS 382
ISP + L +L YLSI N S++T NL L K D+N+
Sbjct: 144 ISP-LAGLTNLQYLSIGNAQVSDLT-------PLANLSKLTTLKA-------DDNK---- 184
Query: 383 SYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDL 442
I D + LA L L + L +NQI+ P L N NLF + L
Sbjct: 185 -----------ISDI-------SPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224
Query: 443 SYNSISGE 450
+ +I+ +
Sbjct: 225 TNQTITNQ 232
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
Query: 161 CSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSN 220
CS QT N S+P I T Q + L NQ++ +L +L L SN
Sbjct: 10 CSCDQTLVNCQNIRLASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN 67
Query: 221 KFSGLIPQDIGKLTNLKSLQLHTNSLSGF 249
K + + KLT L L L+ N L
Sbjct: 68 KLTAIPTGVFDKLTQLTQLDLNDNHLKSI 96
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 176 GSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTN 235
S+P I T+ Q + L NQ++ LT L+ LDL +N+ + L KLT
Sbjct: 22 ASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 79
Query: 236 LKSLQLHTNSL 246
L L L+ N L
Sbjct: 80 LTQLSLNDNQL 90
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 176 GSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTN 235
S+P I T+ Q + L NQ++ LT L+ LDL +N+ + L KLT
Sbjct: 30 ASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 87
Query: 236 LKSLQLHTNSL 246
L L L+ N L
Sbjct: 88 LTQLSLNDNQL 98
>pdb|1EFY|A Chain A, Crystal Structure Of The Catalytic Fragment Of Poly (Adp-
Ribose) Polymerase Complexed With A Benzimidazole
Inhibitor
Length = 350
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 9/60 (15%)
Query: 196 NQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGK-----LTNLKSLQLHTNSLSGFL 250
N++ A+SDG + +LDL SN+F LIP D G L+NL+ +Q L L
Sbjct: 53 NEVQQAVSDGG---SESQILDL-SNRFYTLIPHDFGMKKPPLLSNLEYIQAKVQMLDNLL 108
>pdb|1A26|A Chain A, The Catalytic Fragment Of Poly(Adp-Ribose) Polymerase
Complexed With Carba-Nad
pdb|1PAX|A Chain A, The Catalytic Fragment Of Poly(Adp-Ribose) Polymerase
Complexed With 3,4-Dihydro-5-Methyl-Isoquinolinone
pdb|2PAW|A Chain A, The Catalytic Fragment Of Poly(Adp-Ribose) Polymerase
pdb|2PAX|A Chain A, The Catalytic Fragment Of Poly(Adp-Ribose) Polymerase
Complexed With 4-Amino-1,8-Naphthalimide
pdb|3PAX|A Chain A, The Catalytic Fragment Of Poly(Adp-Ribose) Polymerase
Complexed With 3-Methoxybenzamide
pdb|4PAX|A Chain A, The Catalytic Fragment Of Poly(Adp-Ribose) Polymerase
Complexed With
8-Hydroxy-2-Methyl-3-Hydro-Quinazolin-4-One
Length = 361
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 9/60 (15%)
Query: 196 NQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGK-----LTNLKSLQLHTNSLSGFL 250
N++ A+SDG + +LDL SN+F LIP D G L+NL+ +Q L L
Sbjct: 61 NEVQQAVSDGG---SESQILDL-SNRFYTLIPHDFGMKKPPLLSNLEYIQAKVQMLDNLL 116
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 69/280 (24%), Positives = 111/280 (39%), Gaps = 33/280 (11%)
Query: 212 LSMLDLQSNKFSGLIPQDIGKL---TNLKSLQLHTNSLSGFLP----QSLMXXXXXXXXX 264
L +LD Q+N L +D+ L TNL SL L+ N ++G P ++
Sbjct: 155 LKVLDFQNNAIHYLSKEDMSSLQQATNL-SLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ 213
Query: 265 XXXXXFRG----DLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIV 320
F+G + + T ++ D+ F G +++ S I L ++
Sbjct: 214 NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVES------INLQKHYFF 267
Query: 321 GQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRA 380
S L L +T + S + L+G L+ L+L F EN
Sbjct: 268 NISSNTFHCFSGLQELDLTATHLSELPSG---LVGLSTLKKLVLSANKF------ENLCQ 318
Query: 381 ISSYAFQNLLVLGIGDCEIKGQIPT-WLARLKKLQVLDLGSNQITGS--IPGWLGNMPNL 437
IS+ F +L L I + ++ T L L+ L+ LDL + I S L N+ +L
Sbjct: 319 ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHL 378
Query: 438 FYIDLSYN---SISGEFPKEFCGLRALALQEVKNRADGSQ 474
++LSYN S+ E KE L L L + + +Q
Sbjct: 379 QSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQ 418
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,472,241
Number of Sequences: 62578
Number of extensions: 686581
Number of successful extensions: 2277
Number of sequences better than 100.0: 101
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 1435
Number of HSP's gapped (non-prelim): 485
length of query: 638
length of database: 14,973,337
effective HSP length: 105
effective length of query: 533
effective length of database: 8,402,647
effective search space: 4478610851
effective search space used: 4478610851
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)