Query 038036
Match_columns 638
No_of_seqs 489 out of 4351
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 06:53:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038036.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038036hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 4E-64 8.6E-69 581.6 41.5 567 13-611 46-612 (968)
2 PLN00113 leucine-rich repeat r 100.0 5.4E-54 1.2E-58 497.1 36.3 517 59-607 68-585 (968)
3 KOG4194 Membrane glycoprotein 100.0 5.8E-38 1.2E-42 308.7 9.1 362 141-576 81-445 (873)
4 KOG4194 Membrane glycoprotein 100.0 1.9E-37 4E-42 305.1 7.6 393 87-557 54-450 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 2.8E-40 6E-45 311.3 -17.6 416 137-605 113-540 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 2.5E-38 5.4E-43 298.2 -13.2 478 37-583 46-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 1.3E-33 2.9E-38 292.6 -4.4 466 37-582 22-488 (1081)
8 KOG0618 Serine/threonine phosp 100.0 1.6E-33 3.4E-38 292.1 -4.1 463 37-580 46-510 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 2E-33 4.3E-38 278.6 -3.5 367 137-583 6-375 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 3.9E-32 8.5E-37 269.5 -0.8 385 59-578 6-394 (1255)
11 PLN03210 Resistant to P. syrin 99.9 6.3E-23 1.4E-27 238.1 25.9 323 154-557 580-904 (1153)
12 PLN03210 Resistant to P. syrin 99.9 3.6E-22 7.8E-27 231.9 27.9 287 138-447 611-905 (1153)
13 KOG4237 Extracellular matrix p 99.9 4.6E-25 1E-29 208.6 -3.6 279 35-320 66-359 (498)
14 KOG4237 Extracellular matrix p 99.9 7.7E-24 1.7E-28 200.4 -1.8 148 41-197 51-199 (498)
15 PRK15387 E3 ubiquitin-protein 99.8 1.3E-19 2.9E-24 195.2 16.7 61 522-587 402-462 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 2.8E-19 6E-24 192.8 17.9 43 523-566 423-465 (788)
17 PRK15370 E3 ubiquitin-protein 99.7 1.8E-17 3.8E-22 180.2 13.7 55 388-448 326-380 (754)
18 PRK15370 E3 ubiquitin-protein 99.7 3.9E-17 8.3E-22 177.6 14.0 202 37-271 179-380 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 1E-18 2.2E-23 176.9 1.2 185 136-320 79-291 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 9.2E-19 2E-23 177.2 0.9 236 136-398 49-318 (319)
21 KOG0617 Ras suppressor protein 99.6 2.3E-17 5E-22 138.9 -4.8 162 386-591 32-194 (264)
22 KOG0617 Ras suppressor protein 99.6 3.1E-17 6.7E-22 138.1 -6.9 155 160-320 31-186 (264)
23 PLN03150 hypothetical protein; 99.3 9E-12 1.9E-16 135.5 8.5 116 501-618 421-538 (623)
24 KOG1909 Ran GTPase-activating 99.2 2E-12 4.4E-17 121.9 -1.8 246 34-295 28-310 (382)
25 KOG3207 Beta-tubulin folding c 99.2 5.6E-12 1.2E-16 122.3 0.9 137 281-448 119-259 (505)
26 KOG3207 Beta-tubulin folding c 99.2 6.7E-12 1.4E-16 121.8 0.8 211 58-296 119-339 (505)
27 KOG0532 Leucine-rich repeat (L 99.1 3.2E-12 6.8E-17 127.8 -2.5 149 388-583 99-247 (722)
28 KOG1259 Nischarin, modulator o 99.1 2.2E-11 4.8E-16 112.3 1.7 229 107-347 179-415 (490)
29 KOG1909 Ran GTPase-activating 99.1 4.7E-12 1E-16 119.6 -3.2 185 136-320 90-311 (382)
30 PLN03150 hypothetical protein; 99.1 3.9E-10 8.5E-15 122.8 11.0 128 16-149 390-526 (623)
31 COG4886 Leucine-rich repeat (L 99.1 2.9E-10 6.3E-15 118.4 8.5 69 516-587 226-294 (394)
32 KOG0532 Leucine-rich repeat (L 99.0 8.3E-12 1.8E-16 124.9 -4.4 170 141-320 78-247 (722)
33 PF14580 LRR_9: Leucine-rich r 99.0 2.1E-10 4.5E-15 102.0 4.1 105 187-296 20-126 (175)
34 KOG4658 Apoptotic ATPase [Sign 99.0 2.5E-10 5.5E-15 126.8 5.4 274 57-344 520-807 (889)
35 COG4886 Leucine-rich repeat (L 99.0 9E-10 1.9E-14 114.7 6.7 176 161-345 115-291 (394)
36 PF14580 LRR_9: Leucine-rich r 99.0 3.7E-10 7.9E-15 100.4 3.1 125 160-289 17-146 (175)
37 KOG4658 Apoptotic ATPase [Sign 98.9 7.6E-10 1.6E-14 123.1 5.0 105 138-243 545-651 (889)
38 KOG1259 Nischarin, modulator o 98.9 3.1E-10 6.7E-15 104.9 1.1 129 233-369 283-411 (490)
39 PF13855 LRR_8: Leucine rich r 98.9 1.4E-09 3.1E-14 79.3 3.2 61 522-582 1-61 (61)
40 KOG0531 Protein phosphatase 1, 98.7 2E-09 4.2E-14 112.3 -1.0 128 109-247 71-199 (414)
41 KOG0531 Protein phosphatase 1, 98.7 2.4E-09 5.3E-14 111.6 -0.9 106 109-223 94-199 (414)
42 PF13855 LRR_8: Leucine rich r 98.6 1.8E-08 4E-13 73.4 3.0 61 387-447 1-61 (61)
43 KOG2120 SCF ubiquitin ligase, 98.5 1.8E-09 4E-14 99.8 -5.8 179 87-293 187-373 (419)
44 KOG2120 SCF ubiquitin ligase, 98.5 8.1E-09 1.8E-13 95.7 -2.7 160 284-447 186-350 (419)
45 KOG1859 Leucine-rich repeat pr 98.5 3.6E-09 7.9E-14 109.2 -6.5 102 502-608 191-294 (1096)
46 KOG4579 Leucine-rich repeat (L 98.3 8.5E-08 1.8E-12 78.6 -1.9 87 502-591 81-167 (177)
47 KOG2982 Uncharacterized conser 98.3 2.5E-07 5.3E-12 86.0 0.8 189 185-374 70-266 (418)
48 KOG2982 Uncharacterized conser 98.2 4.1E-07 8.9E-12 84.6 1.9 84 233-317 70-156 (418)
49 KOG1859 Leucine-rich repeat pr 98.2 3.4E-08 7.4E-13 102.2 -5.7 198 137-344 83-292 (1096)
50 COG5238 RNA1 Ran GTPase-activa 98.2 1.4E-07 3.1E-12 86.4 -2.4 140 107-247 89-255 (388)
51 KOG4341 F-box protein containi 98.1 5.7E-08 1.2E-12 94.4 -6.3 106 257-362 345-457 (483)
52 KOG4579 Leucine-rich repeat (L 98.1 3.9E-07 8.5E-12 74.8 -2.0 100 502-605 57-157 (177)
53 COG5238 RNA1 Ran GTPase-activa 98.0 2E-06 4.3E-11 79.1 0.9 93 354-448 211-316 (388)
54 PF12799 LRR_4: Leucine Rich r 97.9 7.3E-06 1.6E-10 54.5 2.2 37 522-559 1-37 (44)
55 KOG4341 F-box protein containi 97.8 1.2E-06 2.5E-11 85.6 -4.1 188 256-447 188-384 (483)
56 PRK15386 type III secretion pr 97.8 7.3E-05 1.6E-09 75.2 7.6 33 522-557 156-188 (426)
57 KOG1644 U2-associated snRNP A' 97.7 8.5E-05 1.8E-09 65.7 6.0 83 212-296 44-126 (233)
58 KOG1644 U2-associated snRNP A' 97.6 7.6E-05 1.7E-09 66.0 5.2 127 38-173 21-151 (233)
59 PF12799 LRR_4: Leucine Rich r 97.6 5.9E-05 1.3E-09 50.1 3.4 37 411-448 1-37 (44)
60 PRK15386 type III secretion pr 97.5 0.00038 8.2E-09 70.1 9.3 54 523-581 133-188 (426)
61 KOG3665 ZYG-1-like serine/thre 97.5 4.6E-05 9.9E-10 83.3 2.8 157 36-198 60-232 (699)
62 KOG3665 ZYG-1-like serine/thre 97.4 5.7E-05 1.2E-09 82.5 2.0 112 257-370 147-263 (699)
63 PF13306 LRR_5: Leucine rich r 97.4 0.00042 9.2E-09 59.3 6.3 36 56-93 8-43 (129)
64 PF13306 LRR_5: Leucine rich r 97.3 0.0011 2.3E-08 56.7 8.1 79 136-217 10-88 (129)
65 KOG1947 Leucine rich repeat pr 96.9 8.3E-05 1.8E-09 79.9 -3.8 116 105-222 183-307 (482)
66 KOG2739 Leucine-rich acidic nu 96.6 0.0016 3.4E-08 60.5 2.9 86 209-296 42-129 (260)
67 KOG2739 Leucine-rich acidic nu 96.5 0.0011 2.4E-08 61.5 1.3 63 159-223 40-104 (260)
68 PF08263 LRRNT_2: Leucine rich 96.4 0.0022 4.8E-08 42.4 2.1 22 12-33 20-43 (43)
69 KOG1947 Leucine rich repeat pr 96.4 0.00078 1.7E-08 72.4 -0.4 63 282-344 242-308 (482)
70 KOG2123 Uncharacterized conser 96.2 0.00014 3E-09 67.6 -6.2 83 35-122 18-100 (388)
71 KOG2123 Uncharacterized conser 96.1 0.00021 4.6E-09 66.4 -5.3 57 187-247 20-76 (388)
72 PF00560 LRR_1: Leucine Rich R 95.4 0.0071 1.5E-07 33.2 1.0 19 524-543 2-20 (22)
73 PF00560 LRR_1: Leucine Rich R 94.8 0.0097 2.1E-07 32.7 0.4 19 548-567 2-20 (22)
74 KOG4308 LRR-containing protein 94.0 0.00037 8E-09 73.0 -12.0 89 62-150 89-184 (478)
75 KOG4308 LRR-containing protein 92.3 0.00047 1E-08 72.2 -14.2 40 112-151 89-128 (478)
76 PF13504 LRR_7: Leucine rich r 92.0 0.074 1.6E-06 27.0 0.8 13 523-535 2-14 (17)
77 smart00369 LRR_TYP Leucine-ric 90.6 0.23 5E-06 28.4 2.1 21 60-81 2-22 (26)
78 smart00370 LRR Leucine-rich re 90.6 0.23 5E-06 28.4 2.1 21 60-81 2-22 (26)
79 KOG0473 Leucine-rich repeat pr 88.2 0.02 4.3E-07 52.2 -5.4 79 502-583 46-124 (326)
80 KOG3864 Uncharacterized conser 87.2 0.14 3E-06 46.0 -0.8 83 36-119 101-185 (221)
81 smart00369 LRR_TYP Leucine-ric 87.0 0.46 1E-05 27.1 1.6 14 546-559 2-15 (26)
82 smart00370 LRR Leucine-rich re 87.0 0.46 1E-05 27.1 1.6 14 546-559 2-15 (26)
83 PF13516 LRR_6: Leucine Rich r 86.7 0.29 6.3E-06 27.4 0.7 17 435-451 2-18 (24)
84 KOG3864 Uncharacterized conser 86.4 0.31 6.8E-06 43.8 1.1 80 388-467 102-184 (221)
85 KOG0473 Leucine-rich repeat pr 82.8 0.11 2.3E-06 47.6 -3.5 55 503-559 70-124 (326)
86 smart00368 LRR_RI Leucine rich 71.5 2.7 6E-05 24.5 1.4 12 87-98 4-15 (28)
87 smart00365 LRR_SD22 Leucine-ri 71.4 3.5 7.5E-05 23.7 1.7 14 546-559 2-15 (26)
88 smart00364 LRR_BAC Leucine-ric 70.3 2.8 6.1E-05 24.0 1.2 13 523-535 3-15 (26)
89 KOG4242 Predicted myosin-I-bin 70.2 34 0.00073 35.5 9.4 15 306-320 439-453 (553)
90 KOG4242 Predicted myosin-I-bin 69.7 17 0.00037 37.5 7.2 67 136-204 163-232 (553)
91 KOG3763 mRNA export factor TAP 67.4 3.8 8.2E-05 42.9 2.3 69 330-402 217-285 (585)
92 KOG3763 mRNA export factor TAP 40.8 21 0.00046 37.6 2.6 66 385-450 216-285 (585)
93 smart00367 LRR_CC Leucine-rich 37.6 23 0.0005 20.0 1.4 13 434-446 1-13 (26)
94 TIGR00864 PCC polycystin catio 21.7 50 0.0011 42.3 1.7 34 528-561 1-34 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4e-64 Score=581.60 Aligned_cols=567 Identities=35% Similarity=0.523 Sum_probs=508.7
Q ss_pred CCCCCCCCCCCCcCccceEECCCCCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEc
Q 038036 13 NPPLNWSFSTDCCFWEGIKCDSKARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDL 92 (638)
Q Consensus 13 ~~~~~w~~~~~~~~w~g~~c~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L 92 (638)
+.+.+|+...+||.|.|+.|+..++|+.|+++++.+.+.+++++..+++|++|+|++|.+.+.+|...|..+.+|++|+|
T Consensus 46 ~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~L 125 (968)
T PLN00113 46 KYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL 125 (968)
T ss_pred ccCCCCCCCCCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEEC
Confidence 45789988889999999999877899999999999999999999999999999999999998999998889999999999
Q ss_pred CCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccc
Q 038036 93 SYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFN 172 (638)
Q Consensus 93 s~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n 172 (638)
++|++++.+|. ..+++|++|++++|.+.+..|..+. .+++|++|++++|.+.+.+|..+.++++|++|++++|
T Consensus 126 s~n~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~----~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 198 (968)
T PLN00113 126 SNNNFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIG----SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN 198 (968)
T ss_pred cCCccccccCc---cccCCCCEEECcCCcccccCChHHh----cCCCCCEEECccCcccccCChhhhhCcCCCeeeccCC
Confidence 99999887775 3478999999999999887776555 7999999999999999899999999999999999999
Q ss_pred cccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcch
Q 038036 173 YLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQ 252 (638)
Q Consensus 173 ~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~ 252 (638)
.+.+.+|..+.++++|++|++++|.+.+.+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|.
T Consensus 199 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 278 (968)
T PLN00113 199 QLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP 278 (968)
T ss_pred CCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCch
Confidence 99989999999999999999999999989999999999999999999999999999999999999999999999988999
Q ss_pred hhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCchhhhcCCC
Q 038036 253 SLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALES 332 (638)
Q Consensus 253 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~ 332 (638)
.+.++++|+.|++++|.+.+.++. .+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+..+++
T Consensus 279 ~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~ 357 (968)
T PLN00113 279 SIFSLQKLISLDLSDNSLSGEIPE-LVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNN 357 (968)
T ss_pred hHhhccCcCEEECcCCeeccCCCh-hHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCC
Confidence 999999999999999999877664 6788999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchHHhhcCCC
Q 038036 333 LSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKK 412 (638)
Q Consensus 333 L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 412 (638)
|+.|++++|.+.... ...+..+++|+.+++++|.+.+..+.... .+++|+.|++++|.+.+..|..+..++.
T Consensus 358 L~~L~Ls~n~l~~~~--p~~~~~~~~L~~L~l~~n~l~~~~p~~~~------~~~~L~~L~L~~n~l~~~~p~~~~~l~~ 429 (968)
T PLN00113 358 LTVLDLSTNNLTGEI--PEGLCSSGNLFKLILFSNSLEGEIPKSLG------ACRSLRRVRLQDNSFSGELPSEFTKLPL 429 (968)
T ss_pred CcEEECCCCeeEeeC--ChhHhCcCCCCEEECcCCEecccCCHHHh------CCCCCCEEECcCCEeeeECChhHhcCCC
Confidence 999999999887432 23456678999999999999887776543 6789999999999999999999999999
Q ss_pred CCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhhccchhhhccccCCCCCCcccccccccchhhhhcc
Q 038036 413 LQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQ 492 (638)
Q Consensus 413 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 492 (638)
|+.|++++|.+++.++..+..+++|+.|++++|.+.+.+|..+. .+.|+.++++.+.-...... .+..
T Consensus 430 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~-~~~L~~L~ls~n~l~~~~~~-~~~~---------- 497 (968)
T PLN00113 430 VYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG-SKRLENLDLSRNQFSGAVPR-KLGS---------- 497 (968)
T ss_pred CCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc-cccceEEECcCCccCCccCh-hhhh----------
Confidence 99999999999998888888999999999999999888887653 46677776665432211100 0000
Q ss_pred cccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCC
Q 038036 493 YNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFL 572 (638)
Q Consensus 493 ~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 572 (638)
......|++++|.+.+.+|..+.++++|++|+|++|.+++.+|..|..+++|+.|+|++|++++.+|..+..+++|
T Consensus 498 ----l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 573 (968)
T PLN00113 498 ----LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESL 573 (968)
T ss_pred ----hhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCccc
Confidence 0112479999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEecccCceeecCCCCCcCCCcCCCccCCCCCCCCCCC
Q 038036 573 SSFSVANNDLQGQIPSGGQFLTFPSSSFEGNPRFCGDIV 611 (638)
Q Consensus 573 ~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~~ 611 (638)
+.|++++|++.|.+|..+++.++....+.|||.+||...
T Consensus 574 ~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~ 612 (968)
T PLN00113 574 VQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDT 612 (968)
T ss_pred CEEeccCCcceeeCCCcchhcccChhhhcCCccccCCcc
Confidence 999999999999999999999999999999999998654
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5.4e-54 Score=497.12 Aligned_cols=517 Identities=31% Similarity=0.477 Sum_probs=465.9
Q ss_pred CCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCC
Q 038036 59 LTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLS 138 (638)
Q Consensus 59 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~ 138 (638)
..+++.|++++|.+.+.++ ..|..++.|++|+|++|++++.+|..++..+++|++|++++|.+++.+|.. .++
T Consensus 68 ~~~v~~L~L~~~~i~~~~~-~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~------~l~ 140 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKIS-SAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG------SIP 140 (968)
T ss_pred CCcEEEEEecCCCccccCC-hHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCcc------ccC
Confidence 3579999999999987665 457789999999999999998999988888999999999999998877752 578
Q ss_pred CcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEee
Q 038036 139 SLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQ 218 (638)
Q Consensus 139 ~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~ 218 (638)
+|++|++++|.+.+..|..++++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+..|..+..+++|++|+++
T Consensus 141 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 220 (968)
T PLN00113 141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLG 220 (968)
T ss_pred CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECc
Confidence 99999999999998999999999999999999999998999999999999999999999998999999999999999999
Q ss_pred cCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCccccc
Q 038036 219 SNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGS 298 (638)
Q Consensus 219 ~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~ 298 (638)
+|.+.+.+|..++.+++|++|++++|.+.+..|..+.++++|+.|++++|.+.+.++. .+..+++|+.|++++|.+.+.
T Consensus 221 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~ 299 (968)
T PLN00113 221 YNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP-SIFSLQKLISLDLSDNSLSGE 299 (968)
T ss_pred CCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCch-hHhhccCcCEEECcCCeeccC
Confidence 9999999999999999999999999999989999999999999999999999876664 678899999999999999999
Q ss_pred ccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchh
Q 038036 299 FPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQ 378 (638)
Q Consensus 299 ~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 378 (638)
+|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.... ...+..+++|+.|++++|.+.+..+....
T Consensus 300 ~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~--p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~ 377 (968)
T PLN00113 300 IPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEI--PKNLGKHNNLTVLDLSTNNLTGEIPEGLC 377 (968)
T ss_pred CChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcC--ChHHhCCCCCcEEECCCCeeEeeCChhHh
Confidence 9999999999999999999999999999999999999999999987432 23567789999999999999887776543
Q ss_pred hhccccCCCCccEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhh
Q 038036 379 RAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGL 458 (638)
Q Consensus 379 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l 458 (638)
.+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++..|..+..++.|+.|++++|.+.+.+|..+..+
T Consensus 378 ------~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 451 (968)
T PLN00113 378 ------SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDM 451 (968)
T ss_pred ------CcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhccccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecC
Q 038036 459 RALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEI 538 (638)
Q Consensus 459 ~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 538 (638)
++|+.+++..+.-... .|..... .-.+.|++++|++++..|..+.++++|+.|+|++|.+.+.+
T Consensus 452 ~~L~~L~L~~n~~~~~--~p~~~~~--------------~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 515 (968)
T PLN00113 452 PSLQMLSLARNKFFGG--LPDSFGS--------------KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEI 515 (968)
T ss_pred CCCcEEECcCceeeee--cCccccc--------------ccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeC
Confidence 9999888876643221 1111111 12347999999999999999999999999999999999999
Q ss_pred ChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecccCceeecCCCC-CcCCCcCCCccCCCCCCC
Q 038036 539 PDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPSG-GQFLTFPSSSFEGNPRFC 607 (638)
Q Consensus 539 p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~~l~~~~~~~n~~lc 607 (638)
|+.+..+++|+.|+|++|.+++.+|..+..+++|+.|++++|++++.+|.. ..+.++..+.+++|+..+
T Consensus 516 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 516 PDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred ChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence 999999999999999999999999999999999999999999999999976 346778899999998665
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=5.8e-38 Score=308.67 Aligned_cols=362 Identities=27% Similarity=0.290 Sum_probs=169.3
Q ss_pred CEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecC
Q 038036 141 KILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSN 220 (638)
Q Consensus 141 ~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n 220 (638)
+.|++++|.+...-+..|.++++|+.+++..|.++ .+|.......+|+.|+|.+|.|..+-.+.+..++.|+.||++.|
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN 159 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN 159 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc
Confidence 34555555555444444555555555555555554 44444334444555555555555444444555555555555555
Q ss_pred cCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCccccccc
Q 038036 221 KFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFP 300 (638)
Q Consensus 221 ~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~ 300 (638)
.++.+.-..|..-.++++|+|++|.|+......|.++.+|..|.|+.|+++ .+|...|..+++|+.|+|..|+|.-.-.
T Consensus 160 ~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ 238 (873)
T KOG4194|consen 160 LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEG 238 (873)
T ss_pred hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehh
Confidence 554443334444445555555555555444444444445555555555544 3444444445555555555544442223
Q ss_pred ccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhh
Q 038036 301 LTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRA 380 (638)
Q Consensus 301 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 380 (638)
..|.++++|+.|.+.+|++.......|..+.++++|+|..|+++.+.... +
T Consensus 239 ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~--l--------------------------- 289 (873)
T KOG4194|consen 239 LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGW--L--------------------------- 289 (873)
T ss_pred hhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccc--c---------------------------
Confidence 33444444444444444444333334444444444444444443322110 0
Q ss_pred ccccCCCCccEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhhcc
Q 038036 381 ISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRA 460 (638)
Q Consensus 381 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~ 460 (638)
.+++.|+.|+++.|.|...-++..+.+++|++|+|++|.++...++.|..+.+|++|+|++|++...-...|..+++
T Consensus 290 ---fgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lss 366 (873)
T KOG4194|consen 290 ---FGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSS 366 (873)
T ss_pred ---cccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhh
Confidence 13344444444444444444444444555555555555555444445555555555555555554333334444444
Q ss_pred chhhhccccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCch---hhhcCcCCCeeeCCCCeeeec
Q 038036 461 LALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPI---EIGNLKFLHVLDLSLNNFSGE 537 (638)
Q Consensus 461 L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~---~l~~l~~L~~L~Ls~n~l~~~ 537 (638)
|+ .|||++|.+...+.+ .|.++++|+.|++-+|++..+
T Consensus 367 L~---------------------------------------~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I 407 (873)
T KOG4194|consen 367 LH---------------------------------------KLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSI 407 (873)
T ss_pred hh---------------------------------------hhcCcCCeEEEEEecchhhhccchhhhheeecCceeeec
Confidence 44 244444444332222 244455555555555555433
Q ss_pred CChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEe
Q 038036 538 IPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFS 576 (638)
Q Consensus 538 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 576 (638)
.-..|..+..|++|||.+|.|..+-|.+|..+ .|++|-
T Consensus 408 ~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv 445 (873)
T KOG4194|consen 408 PKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELV 445 (873)
T ss_pred chhhhccCcccceecCCCCcceeecccccccc-hhhhhh
Confidence 33444555555555555555544444444444 444443
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-37 Score=305.10 Aligned_cols=393 Identities=21% Similarity=0.257 Sum_probs=317.5
Q ss_pred ecEEEcCCccccccccHHHHhc-CCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCc
Q 038036 87 LETLDLSYNSFSGQFLSSFFQL-AENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQ 165 (638)
Q Consensus 87 L~~L~Ls~n~i~~~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~ 165 (638)
-..||.+.+.+...--..+.+. ...-+.|++++|+++.+.+..+. ++++|+.+++..|.++ .+|.......+|+
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~----nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~ 128 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFY----NLPNLQEVNLNKNELT-RIPRFGHESGHLE 128 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHh----cCCcceeeeeccchhh-hccccccccccee
Confidence 5678888887763211111111 23467799999998876665544 8899999999999988 7787777778899
Q ss_pred EEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCC
Q 038036 166 TFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNS 245 (638)
Q Consensus 166 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 245 (638)
.|+|.+|.+...-.+.+..++.|+.|||+.|.|+.+.-..|..-.++++|++++|+|+..-...|..+.+|..|.|+.|+
T Consensus 129 ~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr 208 (873)
T KOG4194|consen 129 KLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR 208 (873)
T ss_pred EEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCc
Confidence 99999999887777778888999999999999886655667777789999999999998877888888899999999999
Q ss_pred CCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCch
Q 038036 246 LSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISP 325 (638)
Q Consensus 246 i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~ 325 (638)
++...+..|.++++|+.|+|..|++. .+....|.++++|+.|.+..|.+...-...|..|.++++|+|+.|++...-..
T Consensus 209 ittLp~r~Fk~L~~L~~LdLnrN~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g 287 (873)
T KOG4194|consen 209 ITTLPQRSFKRLPKLESLDLNRNRIR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEG 287 (873)
T ss_pred ccccCHHHhhhcchhhhhhcccccee-eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcc
Confidence 99766678888999999999999886 44456788999999999999998876677788889999999999999877778
Q ss_pred hhhcCCCCCEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchH
Q 038036 326 EILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPT 405 (638)
Q Consensus 326 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 405 (638)
++.++++|+.|++++|.+..+...-. ..+++|++|+++.|.++...+.
T Consensus 288 ~lfgLt~L~~L~lS~NaI~rih~d~W--------------------------------sftqkL~~LdLs~N~i~~l~~~ 335 (873)
T KOG4194|consen 288 WLFGLTSLEQLDLSYNAIQRIHIDSW--------------------------------SFTQKLKELDLSSNRITRLDEG 335 (873)
T ss_pred cccccchhhhhccchhhhheeecchh--------------------------------hhcccceeEeccccccccCChh
Confidence 88899999999999998876543110 1357888888889999888888
Q ss_pred HhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccch---hhhhhccchhhhccccCCCCCCccccccc
Q 038036 406 WLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPK---EFCGLRALALQEVKNRADGSQLQLPLFVP 482 (638)
Q Consensus 406 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~---~~~~l~~L~~l~~~~~~~~~~~~~~~~~~ 482 (638)
.|..+..|++|+|++|.+.......|..+.+|++|||++|.++..+-+ .|.++++|+
T Consensus 336 sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lr-------------------- 395 (873)
T KOG4194|consen 336 SFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLR-------------------- 395 (873)
T ss_pred HHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhh--------------------
Confidence 899999999999999999877777888999999999999998866543 355555555
Q ss_pred ccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCc
Q 038036 483 KTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENN 557 (638)
Q Consensus 483 ~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~ 557 (638)
.|++.+|++......+|.++++|++|||.+|.|..+.|+.|..+ .|++|-++.-.
T Consensus 396 -------------------kL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSss 450 (873)
T KOG4194|consen 396 -------------------KLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSS 450 (873)
T ss_pred -------------------heeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccc
Confidence 58888999986666689999999999999999988889999988 88888776433
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.8e-40 Score=311.32 Aligned_cols=416 Identities=28% Similarity=0.398 Sum_probs=196.8
Q ss_pred CCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEE
Q 038036 137 LSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLD 216 (638)
Q Consensus 137 l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ 216 (638)
+.+++.+++++|.+. .+++.++.+..+..++..+|.+. ..|..+..+.++..+++.+|++....|..+ +++.|++||
T Consensus 113 ~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld 189 (565)
T KOG0472|consen 113 LISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHI-AMKRLKHLD 189 (565)
T ss_pred hhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHH-HHHHHHhcc
Confidence 344444444444444 34444444444444444444444 344444444445555555555442222222 245555555
Q ss_pred eecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCccc
Q 038036 217 LQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFT 296 (638)
Q Consensus 217 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~ 296 (638)
...|-+. .+|..++.+.+|+.|++..|++. .+| .|.+|..|++|++..|.+. .++.....+++++..||+..|++.
T Consensus 190 ~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk 265 (565)
T KOG0472|consen 190 CNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK 265 (565)
T ss_pred cchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc
Confidence 5444443 33444555555555555555554 334 3555555555555555544 344434445555555555555554
Q ss_pred ccccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCCcCCCCccccccccC---CCCCcEE----EcCCCcc
Q 038036 297 GSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMG---CKNLRML----LLCKKFF 369 (638)
Q Consensus 297 ~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~---~~~L~~L----~l~~~~~ 369 (638)
..|..++-+.+|..||+++|.++ ..|..++++ .|+.|.+.+|++.++...+-.-+. ++.|+.- .++...-
T Consensus 266 -e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~ 342 (565)
T KOG0472|consen 266 -EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEG 342 (565)
T ss_pred -cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcc
Confidence 44555555555555555555554 344445554 555555555554433221100000 0000000 0000000
Q ss_pred cc-cCCc-chhhhccccCCCCccEEEeeCCcccccchHHhhcCC--CCCEEecCCCccccCcCccccCCCCCCE-EEccC
Q 038036 370 HE-AIPD-ENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLK--KLQVLDLGSNQITGSIPGWLGNMPNLFY-IDLSY 444 (638)
Q Consensus 370 ~~-~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~--~L~~L~L~~n~l~~~~~~~l~~l~~L~~-L~L~~ 444 (638)
.. ..++ ............+.+.|++++-.++....+.|..-. -.+..+++.|++. .+|..+..+..+.+ +.+++
T Consensus 343 ~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsn 421 (565)
T KOG0472|consen 343 GTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSN 421 (565)
T ss_pred cccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhc
Confidence 00 0000 000000001112233333333333322222222111 1333444444443 23322222222221 12222
Q ss_pred CcCccccchhhhhhccchhhhccccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCC
Q 038036 445 NSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFL 524 (638)
Q Consensus 445 n~i~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L 524 (638)
|.+ +.+|..++.++.|. .|++++|-+. .+|..++.+..|
T Consensus 422 n~i-sfv~~~l~~l~kLt---------------------------------------~L~L~NN~Ln-~LP~e~~~lv~L 460 (565)
T KOG0472|consen 422 NKI-SFVPLELSQLQKLT---------------------------------------FLDLSNNLLN-DLPEEMGSLVRL 460 (565)
T ss_pred Ccc-ccchHHHHhhhcce---------------------------------------eeecccchhh-hcchhhhhhhhh
Confidence 222 23333333333332 4667777666 677777777777
Q ss_pred CeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecccCceeecCCCCCcCCCcCCCccCCCC
Q 038036 525 HVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPSGGQFLTFPSSSFEGNP 604 (638)
Q Consensus 525 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~n~ 604 (638)
+.||||+|++. .+|+++..+..|+.+-.++|++....|+.+.++..|.+||+.+|.++...|.-|.+.++..+.++|||
T Consensus 461 q~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 461 QTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred heecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCc
Confidence 77777777776 67777777777777777777777555666777777777777777777555555677777777777776
Q ss_pred C
Q 038036 605 R 605 (638)
Q Consensus 605 ~ 605 (638)
+
T Consensus 540 f 540 (565)
T KOG0472|consen 540 F 540 (565)
T ss_pred c
Confidence 4
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.5e-38 Score=298.16 Aligned_cols=478 Identities=26% Similarity=0.366 Sum_probs=369.9
Q ss_pred CeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEE
Q 038036 37 RVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLN 116 (638)
Q Consensus 37 ~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~ 116 (638)
.++.+.+++|.+.. +.+.+.++..+.+|++++|++. +.|+. .+.+..++.|+.++|++. .+|.+.. ...+|+.++
T Consensus 46 ~l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~-~lp~a-ig~l~~l~~l~vs~n~ls-~lp~~i~-s~~~l~~l~ 120 (565)
T KOG0472|consen 46 DLQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLS-QLPAA-IGELEALKSLNVSHNKLS-ELPEQIG-SLISLVKLD 120 (565)
T ss_pred chhhhhhccCchhh-ccHhhhcccceeEEEeccchhh-hCCHH-HHHHHHHHHhhcccchHh-hccHHHh-hhhhhhhhh
Confidence 56778889998864 4455889999999999999998 67764 457888999999999998 7777654 478899999
Q ss_pred cccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCC
Q 038036 117 VSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGN 196 (638)
Q Consensus 117 Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 196 (638)
.++|.+....+++. .+..+..++..+|+++ ..|+.+.++..+..+++.+|.+.. .|...-.++.|++|+...|
T Consensus 121 ~s~n~~~el~~~i~-----~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~-l~~~~i~m~~L~~ld~~~N 193 (565)
T KOG0472|consen 121 CSSNELKELPDSIG-----RLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKA-LPENHIAMKRLKHLDCNSN 193 (565)
T ss_pred ccccceeecCchHH-----HHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhh-CCHHHHHHHHHHhcccchh
Confidence 99999886555554 5888999999999998 788899999999999999999984 5555555999999999999
Q ss_pred CCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcch-hhcCCCCCcEEEccCcccccccC
Q 038036 197 QLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQ-SLMNCTNLITLNLRINNFRGDLS 275 (638)
Q Consensus 197 ~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~ 275 (638)
-+. .+|..++.+.+|..|++..|++. ..| .|..+..|++|+++.|.|. .+|. ...+++++..||+++|++. .+|
T Consensus 194 ~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~P 268 (565)
T KOG0472|consen 194 LLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVP 268 (565)
T ss_pred hhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCc
Confidence 887 77888999999999999999998 456 8999999999999999998 4554 4558999999999999998 566
Q ss_pred cccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCchhhhcCCC---CCEE-------EccCCcCC-
Q 038036 276 AYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALES---LSYL-------SITNNNFS- 344 (638)
Q Consensus 276 ~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~---L~~L-------~L~~n~l~- 344 (638)
. .+.-+.+|..||+++|.++ ..|..++++ .|+.|-+.+|.+... ...+-+.+. |++| -++...-.
T Consensus 269 d-e~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTi-Rr~ii~~gT~~vLKyLrs~~~~dglS~se~~~ 344 (565)
T KOG0472|consen 269 D-EICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTI-RREIISKGTQEVLKYLRSKIKDDGLSQSEGGT 344 (565)
T ss_pred h-HHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHH-HHHHHcccHHHHHHHHHHhhccCCCCCCcccc
Confidence 5 5677899999999999999 678889999 899999999987522 111111110 1111 01111000
Q ss_pred -----CCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchHHhhcCCCCC-EEec
Q 038036 345 -----NITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQ-VLDL 418 (638)
Q Consensus 345 -----~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~-~L~L 418 (638)
..+..........+.+.|++++-+++.. |++.+.. ..-.-....+++.|++. ++|..+..+..+. .+.+
T Consensus 345 e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~V-PdEVfea---~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~l 419 (565)
T KOG0472|consen 345 ETAMTLPSESFPDIYAIITTKILDVSDKQLTLV-PDEVFEA---AKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVL 419 (565)
T ss_pred cccCCCCCCcccchhhhhhhhhhcccccccccC-CHHHHHH---hhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHh
Confidence 0111122333455677777777666543 3322211 11123567888999887 5666666555544 4566
Q ss_pred CCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhhccchhhhccccCCCCCCcccccccccchhhhhcccccccC
Q 038036 419 GSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFS 498 (638)
Q Consensus 419 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~ 498 (638)
++|.+. .+|..+..+++|..|+|++|.+- .+|..++++..|+
T Consensus 420 snn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq------------------------------------ 461 (565)
T KOG0472|consen 420 SNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQ------------------------------------ 461 (565)
T ss_pred hcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhh------------------------------------
Confidence 777665 78888899999999999999875 7899888888877
Q ss_pred CCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecc
Q 038036 499 LPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVA 578 (638)
Q Consensus 499 ~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~ 578 (638)
.++++.|+|. .+|..+-.+..|+.+-.++|++....|+.+.+|..|..|||.+|.+. .+|..+.++++|++|+++
T Consensus 462 ---~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~ 536 (565)
T KOG0472|consen 462 ---TLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELD 536 (565)
T ss_pred ---eecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEec
Confidence 6888888887 78888888888888888889998666777999999999999999998 888899999999999999
Q ss_pred cCcee
Q 038036 579 NNDLQ 583 (638)
Q Consensus 579 ~n~l~ 583 (638)
+|++.
T Consensus 537 gNpfr 541 (565)
T KOG0472|consen 537 GNPFR 541 (565)
T ss_pred CCccC
Confidence 99997
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=1.3e-33 Score=292.59 Aligned_cols=466 Identities=27% Similarity=0.332 Sum_probs=325.6
Q ss_pred CeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEE
Q 038036 37 RVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLN 116 (638)
Q Consensus 37 ~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~ 116 (638)
.++.|+++.|.+.....+++...-+|+.|||++|.+. ..|.. ...+.+|+.|+++.|.|. ..|.+ ...+.+|++++
T Consensus 22 ~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~-it~l~~L~~ln~s~n~i~-~vp~s-~~~~~~l~~ln 97 (1081)
T KOG0618|consen 22 ALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQ-ITLLSHLRQLNLSRNYIR-SVPSS-CSNMRNLQYLN 97 (1081)
T ss_pred HHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCch-hhhHHHHhhcccchhhHh-hCchh-hhhhhcchhhe
Confidence 4666666666554322344444555777777777665 44443 224556777777777666 44432 33466677777
Q ss_pred cccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCC
Q 038036 117 VSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGN 196 (638)
Q Consensus 117 Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 196 (638)
|.+|.+.. .|.-+. .+.+|+.|+++.|.+. ..|..+..+..+..+..++|.-... ++... ++.+++..+
T Consensus 98 L~~n~l~~-lP~~~~----~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n 166 (1081)
T KOG0618|consen 98 LKNNRLQS-LPASIS----ELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLN 166 (1081)
T ss_pred eccchhhc-CchhHH----hhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhh----hcccc-chhhhhhhh
Confidence 77666552 232222 4666777777777666 5666666666666666666622111 22222 677777777
Q ss_pred CCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCc
Q 038036 197 QLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSA 276 (638)
Q Consensus 197 ~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 276 (638)
.+.+.++..+..+.. .|++.+|.+. . ..+..+++|+.+....|++... -..-++|+.|+.++|.+.. ..
T Consensus 167 ~l~~~~~~~i~~l~~--~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls~l----~~~g~~l~~L~a~~n~l~~-~~- 235 (1081)
T KOG0618|consen 167 VLGGSFLIDIYNLTH--QLDLRYNEME-V--LDLSNLANLEVLHCERNQLSEL----EISGPSLTALYADHNPLTT-LD- 235 (1081)
T ss_pred hcccchhcchhhhhe--eeecccchhh-h--hhhhhccchhhhhhhhcccceE----EecCcchheeeeccCccee-ec-
Confidence 777666666666555 6888888876 2 2566777888888888877632 2234788888888888872 22
Q ss_pred ccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCCcCCCCccccccccCC
Q 038036 277 YNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGC 356 (638)
Q Consensus 277 ~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 356 (638)
.-....+|++++++.|+++ .+|.|+..|.+|+.+....|.++ .+|..+....+|+.|.+..|.+..++. ...+.
T Consensus 236 -~~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~---~le~~ 309 (1081)
T KOG0618|consen 236 -VHPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIPP---FLEGL 309 (1081)
T ss_pred -cccccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCC---ccccc
Confidence 1223457899999999998 57799999999999999999995 677788888999999999999887764 35668
Q ss_pred CCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCccccCCCC
Q 038036 357 KNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPN 436 (638)
Q Consensus 357 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 436 (638)
+.|+.|++..|.+.......... ....+..|+.+.+++.......=...+.|+.|++.+|.+++..-..+.++++
T Consensus 310 ~sL~tLdL~~N~L~~lp~~~l~v-----~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~h 384 (1081)
T KOG0618|consen 310 KSLRTLDLQSNNLPSLPDNFLAV-----LNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKH 384 (1081)
T ss_pred ceeeeeeehhccccccchHHHhh-----hhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccc
Confidence 88999999988876543321111 1123566666666665332111123567899999999999887778899999
Q ss_pred CCEEEccCCcCccccchhhhhhccchhhhccccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCch
Q 038036 437 LFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPI 516 (638)
Q Consensus 437 L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~ 516 (638)
|+.|+|++|++.......+.++..|+ .|+||+|+++ .+|+
T Consensus 385 LKVLhLsyNrL~~fpas~~~kle~Le---------------------------------------eL~LSGNkL~-~Lp~ 424 (1081)
T KOG0618|consen 385 LKVLHLSYNRLNSFPASKLRKLEELE---------------------------------------ELNLSGNKLT-TLPD 424 (1081)
T ss_pred eeeeeecccccccCCHHHHhchHHhH---------------------------------------HHhcccchhh-hhhH
Confidence 99999999999755555566677666 6899999999 7889
Q ss_pred hhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecC-CccccccCCCCeEecccCce
Q 038036 517 EIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEI-PLSIIDLHFLSSFSVANNDL 582 (638)
Q Consensus 517 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~l~~n~l 582 (638)
++..++.|++|...+|.+. ..| .+.++++|+.+|+|.|+++... |.... -+.|++||+++|.-
T Consensus 425 tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 425 TVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNTR 488 (1081)
T ss_pred HHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC-CcccceeeccCCcc
Confidence 9999999999999999998 777 7899999999999999998543 33332 27899999999983
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=1.6e-33 Score=292.10 Aligned_cols=463 Identities=26% Similarity=0.300 Sum_probs=339.4
Q ss_pred CeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEE
Q 038036 37 RVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLN 116 (638)
Q Consensus 37 ~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~ 116 (638)
++..|++++|.+. ..|..+..+.+|+.|+++.|.+. .+|.. ...+..|++|+|.+|.+. ..|.++. .+++|+.|+
T Consensus 46 ~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s-~~~~~~l~~lnL~~n~l~-~lP~~~~-~lknl~~Ld 120 (1081)
T KOG0618|consen 46 KLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSS-CSNMRNLQYLNLKNNRLQ-SLPASIS-ELKNLQYLD 120 (1081)
T ss_pred eeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchh-hhhhhcchhheeccchhh-cCchhHH-hhhcccccc
Confidence 4788888888764 57777888889999999999887 66633 446777999999999887 6666554 488899999
Q ss_pred cccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCC
Q 038036 117 VSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGN 196 (638)
Q Consensus 117 Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 196 (638)
+++|.+.. +|..+. .+..+..+..++|.....++.. . ++.+++..+.+.+.++..+..+.+ .|+|+.|
T Consensus 121 lS~N~f~~-~Pl~i~----~lt~~~~~~~s~N~~~~~lg~~----~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N 188 (1081)
T KOG0618|consen 121 LSFNHFGP-IPLVIE----VLTAEEELAASNNEKIQRLGQT----S-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYN 188 (1081)
T ss_pred cchhccCC-CchhHH----hhhHHHHHhhhcchhhhhhccc----c-chhhhhhhhhcccchhcchhhhhe--eeecccc
Confidence 99998873 444333 5777888888888322122222 1 777888888887777777766666 6889888
Q ss_pred CCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCc
Q 038036 197 QLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSA 276 (638)
Q Consensus 197 ~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 276 (638)
.+. . ..+..+++|+.+....|++.... -..++|+.|+.++|.++...+ -.--.+|+.+++++|.+. .++
T Consensus 189 ~~~-~--~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~-~lp- 257 (1081)
T KOG0618|consen 189 EME-V--LDLSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLS-NLP- 257 (1081)
T ss_pred hhh-h--hhhhhccchhhhhhhhcccceEE----ecCcchheeeeccCcceeecc--ccccccceeeecchhhhh-cch-
Confidence 876 2 34567788888888888876431 234788888888888873322 222367889999999887 456
Q ss_pred ccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCCcCCCCccccccccCC
Q 038036 277 YNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGC 356 (638)
Q Consensus 277 ~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 356 (638)
..+..+.+|+.+++.+|.++ .+|..+....+|+.+.+..|.+. .+|+......+|++|++..|.+..++... +...
T Consensus 258 ~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~--l~v~ 333 (1081)
T KOG0618|consen 258 EWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNF--LAVL 333 (1081)
T ss_pred HHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHH--Hhhh
Confidence 47788899999999999886 67777777888889999889887 56777777889999999999988887632 2222
Q ss_pred CC-CcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCccccCCC
Q 038036 357 KN-LRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMP 435 (638)
Q Consensus 357 ~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 435 (638)
.. ++.++.+.+.+.... ......++.|+.|.+.+|.+++..-..+.+.++|+.|+|++|++.......+.+++
T Consensus 334 ~~~l~~ln~s~n~l~~lp------~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle 407 (1081)
T KOG0618|consen 334 NASLNTLNVSSNKLSTLP------SYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLE 407 (1081)
T ss_pred hHHHHHHhhhhccccccc------cccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchH
Confidence 22 555555555544322 12223567788899999999887777788889999999999998855556788889
Q ss_pred CCCEEEccCCcCccccchhhhhhccchhhhccccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCc
Q 038036 436 NLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIP 515 (638)
Q Consensus 436 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~ 515 (638)
.|++|+||||+++ .+|.++..++.|+. |...+|++. ..|
T Consensus 408 ~LeeL~LSGNkL~-~Lp~tva~~~~L~t---------------------------------------L~ahsN~l~-~fP 446 (1081)
T KOG0618|consen 408 ELEELNLSGNKLT-TLPDTVANLGRLHT---------------------------------------LRAHSNQLL-SFP 446 (1081)
T ss_pred HhHHHhcccchhh-hhhHHHHhhhhhHH---------------------------------------HhhcCCcee-ech
Confidence 9999999999887 67888888888874 555666666 566
Q ss_pred hhhhcCcCCCeeeCCCCeeeec-CChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecccC
Q 038036 516 IEIGNLKFLHVLDLSLNNFSGE-IPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANN 580 (638)
Q Consensus 516 ~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n 580 (638)
.+..++.|+.+|+|.|.++.. +|..... ++|++||+++|.-...--..|..+.++..+++.-+
T Consensus 447 -e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 447 -ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred -hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 788899999999999988743 3333322 78999999999854344456666777777776665
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=2e-33 Score=278.63 Aligned_cols=367 Identities=28% Similarity=0.425 Sum_probs=278.3
Q ss_pred CCCcCEEEccCCcCC-ccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEE
Q 038036 137 LSSLKILDFSYNDFS-GQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSML 215 (638)
Q Consensus 137 l~~L~~L~ls~n~i~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L 215 (638)
++-.+-+|+++|.++ +..|.....+..++.|.+....+. .+|+.++.+.+|++|.+++|++. .+...+..++.|+.+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSV 83 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHH
Confidence 455666778888877 457777777888888888887776 67888888888888888888876 344567778888888
Q ss_pred EeecCcCcc-cCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCc
Q 038036 216 DLQSNKFSG-LIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNN 294 (638)
Q Consensus 216 ~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~ 294 (638)
.+..|++.. -+|..+..+..|..|||++|++. ..|..+....++-.|+|++|+|. .+|...|.++..|-.||+++|+
T Consensus 84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNR 161 (1255)
T ss_pred hhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccch
Confidence 888887653 35677778888888888888888 66788888888888888888886 6777677778888888888888
Q ss_pred ccccccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCC
Q 038036 295 FTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIP 374 (638)
Q Consensus 295 i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 374 (638)
+. .+|..+..+..|++|.|++|.+...-...+..+.+|+.|.+++.+-+- ..+|
T Consensus 162 Le-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl-------------------------~N~P 215 (1255)
T KOG0444|consen 162 LE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTL-------------------------DNIP 215 (1255)
T ss_pred hh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchh-------------------------hcCC
Confidence 77 566667777777777777776643222222233444444554432210 1112
Q ss_pred cchhhhccccCCCCccEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchh
Q 038036 375 DENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKE 454 (638)
Q Consensus 375 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~ 454 (638)
... ..+.+|..++++.|.+. ..|+.+..+++|+.|+|++|+++ .+........+|++|++|.|+++ .+|.+
T Consensus 216 tsl------d~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~a 286 (1255)
T KOG0444|consen 216 TSL------DDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDA 286 (1255)
T ss_pred Cch------hhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHH
Confidence 111 25678888888888877 78899999999999999999998 44445566679999999999997 89999
Q ss_pred hhhhccchhhhccccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCccc-ccCchhhhcCcCCCeeeCCCCe
Q 038036 455 FCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLN-GSIPIEIGNLKFLHVLDLSLNN 533 (638)
Q Consensus 455 ~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~-~~~~~~l~~l~~L~~L~Ls~n~ 533 (638)
++.++.|+. |++.+|+++ .-+|..++.+..|+++..++|.
T Consensus 287 vcKL~kL~k---------------------------------------Ly~n~NkL~FeGiPSGIGKL~~Levf~aanN~ 327 (1255)
T KOG0444|consen 287 VCKLTKLTK---------------------------------------LYANNNKLTFEGIPSGIGKLIQLEVFHAANNK 327 (1255)
T ss_pred HhhhHHHHH---------------------------------------HHhccCcccccCCccchhhhhhhHHHHhhccc
Confidence 999999985 445555554 2578889999999999999998
Q ss_pred eeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecccCcee
Q 038036 534 FSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQ 583 (638)
Q Consensus 534 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 583 (638)
+. ..|+.+..+.+|+.|.|++|++. .+|+++.-++.|+.||++.|+-.
T Consensus 328 LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 328 LE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred cc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 86 88999999999999999999998 78899999999999999988866
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=3.9e-32 Score=269.51 Aligned_cols=385 Identities=22% Similarity=0.319 Sum_probs=236.8
Q ss_pred CCCCCEEECCCCCCCCC-CccccccccceecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCC
Q 038036 59 LTHLCHLNLSHNHLSGP-LAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSL 137 (638)
Q Consensus 59 l~~L~~L~Ls~n~l~~~-~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l 137 (638)
++-.+-+|+++|.+.|. .|.+ ...+.+++.|.|....+. .+|..+. .+.+|++|.+++|++......+. .+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~-v~qMt~~~WLkLnrt~L~-~vPeEL~-~lqkLEHLs~~HN~L~~vhGELs-----~L 77 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHD-VEQMTQMTWLKLNRTKLE-QVPEELS-RLQKLEHLSMAHNQLISVHGELS-----DL 77 (1255)
T ss_pred cceeecccccCCcCCCCcCchh-HHHhhheeEEEechhhhh-hChHHHH-HHhhhhhhhhhhhhhHhhhhhhc-----cc
Confidence 44555566666666642 3322 334555666666666665 5666544 37777777787777765444433 47
Q ss_pred CCcCEEEccCCcCC-ccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEE
Q 038036 138 SSLKILDFSYNDFS-GQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLD 216 (638)
Q Consensus 138 ~~L~~L~ls~n~i~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ 216 (638)
+.|+.+++..|++. +.+|..+..+..|+.||+++|++. ..|..+...+++-.|+|++|+|..+.-..|.++..|-.|+
T Consensus 78 p~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLD 156 (1255)
T KOG0444|consen 78 PRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLD 156 (1255)
T ss_pred hhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhc
Confidence 77788888777764 245666666777777777777776 5666666666666777777766644334455566666666
Q ss_pred eecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCccc
Q 038036 217 LQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFT 296 (638)
Q Consensus 217 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~ 296 (638)
+++|++.. +|..+..+..|++|+|++|.+...--..+ ..+++|+.|.+++.+-+
T Consensus 157 LS~NrLe~-LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQL-------------------------PsmtsL~vLhms~TqRT 210 (1255)
T KOG0444|consen 157 LSNNRLEM-LPPQIRRLSMLQTLKLSNNPLNHFQLRQL-------------------------PSMTSLSVLHMSNTQRT 210 (1255)
T ss_pred cccchhhh-cCHHHHHHhhhhhhhcCCChhhHHHHhcC-------------------------ccchhhhhhhcccccch
Confidence 66666552 34445555555555555555442222222 23344444444444322
Q ss_pred -ccccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCc
Q 038036 297 -GSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPD 375 (638)
Q Consensus 297 -~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 375 (638)
..+|..+..+.+|..++++.|.+. .+|+.+..+++|+.|++++|.++.+....
T Consensus 211 l~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~------------------------- 264 (1255)
T KOG0444|consen 211 LDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTE------------------------- 264 (1255)
T ss_pred hhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccH-------------------------
Confidence 246667777777888888888776 67788888888888888888777543211
Q ss_pred chhhhccccCCCCccEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCc-cccchh
Q 038036 376 ENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSIS-GEFPKE 454 (638)
Q Consensus 376 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~-~~~~~~ 454 (638)
....+|++|+++.|+++ .+|+++..++.|+.|.+.+|++. .-+|..
T Consensus 265 --------------------------------~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSG 311 (1255)
T KOG0444|consen 265 --------------------------------GEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSG 311 (1255)
T ss_pred --------------------------------HHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccc
Confidence 11223455555555554 45555555555555555555543 224555
Q ss_pred hhhhccchhhhccccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCee
Q 038036 455 FCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNF 534 (638)
Q Consensus 455 ~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 534 (638)
++.+..|+. +...+|.+. ..|+.+..|+.|+.|.|++|++
T Consensus 312 IGKL~~Lev---------------------------------------f~aanN~LE-lVPEglcRC~kL~kL~L~~NrL 351 (1255)
T KOG0444|consen 312 IGKLIQLEV---------------------------------------FHAANNKLE-LVPEGLCRCVKLQKLKLDHNRL 351 (1255)
T ss_pred hhhhhhhHH---------------------------------------HHhhccccc-cCchhhhhhHHHHHhcccccce
Confidence 555555542 334455554 6788888899999999999998
Q ss_pred eecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecc
Q 038036 535 SGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVA 578 (638)
Q Consensus 535 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~ 578 (638)
. ++|+.+.-++.|+.||+..|.-....|.-=..-++|+.-++.
T Consensus 352 i-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNID 394 (1255)
T KOG0444|consen 352 I-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNID 394 (1255)
T ss_pred e-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecc
Confidence 7 789999999999999999998774555333333456554444
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=6.3e-23 Score=238.13 Aligned_cols=323 Identities=24% Similarity=0.312 Sum_probs=182.1
Q ss_pred CCccCCCCC-CCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCC
Q 038036 154 LPPGLGNCS-KLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGK 232 (638)
Q Consensus 154 ~~~~l~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~ 232 (638)
+|..+..++ .|+.|.+.++.+. .+|..+ ...+|++|++.++.+. .++..+..+++|+.|+++++.....+| .+..
T Consensus 580 lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~ 655 (1153)
T PLN03210 580 LPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSM 655 (1153)
T ss_pred cCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-cccc
Confidence 333343332 3555555555444 344444 3445555555555544 334444555555555555543322333 3444
Q ss_pred CCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEE
Q 038036 233 LTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAI 312 (638)
Q Consensus 233 l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L 312 (638)
+++|+.|++++|.....+|..+.++++|+.|++++|...+.++.. ..+++|+.|++++|.....+|..
T Consensus 656 l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~--i~l~sL~~L~Lsgc~~L~~~p~~---------- 723 (1153)
T PLN03210 656 ATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG--INLKSLYRLNLSGCSRLKSFPDI---------- 723 (1153)
T ss_pred CCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc--CCCCCCCEEeCCCCCCccccccc----------
Confidence 555555555554433344555555555555555554333233321 13444555555544332222221
Q ss_pred EcCCCcccccCchhhhcCCCCCEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcc-hhhhccccCCCCccE
Q 038036 313 RLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDE-NQRAISSYAFQNLLV 391 (638)
Q Consensus 313 ~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~~~~~L~~ 391 (638)
..+|+.|++++|.+..++..+ .+++|+.|.+..+......... .........+++|+.
T Consensus 724 -----------------~~nL~~L~L~~n~i~~lP~~~----~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~ 782 (1153)
T PLN03210 724 -----------------STNISWLDLDETAIEEFPSNL----RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTR 782 (1153)
T ss_pred -----------------cCCcCeeecCCCccccccccc----cccccccccccccchhhccccccccchhhhhccccchh
Confidence 234444444444444433221 2344444444332211000000 000000113568899
Q ss_pred EEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhhccchhhhccccCC
Q 038036 392 LGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRAD 471 (638)
Q Consensus 392 L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~~~ 471 (638)
|++++|.....+|..+.++++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|.... ++
T Consensus 783 L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~---nL---------- 848 (1153)
T PLN03210 783 LFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDIST---NI---------- 848 (1153)
T ss_pred eeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccccc---cc----------
Confidence 9999998887888889999999999999986555677655 688999999999875544443221 12
Q ss_pred CCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCee
Q 038036 472 GSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGL 551 (638)
Q Consensus 472 ~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 551 (638)
..|++++|.++ .+|.++..+++|+.|+|++|.-...+|..+..+++|+.|
T Consensus 849 -----------------------------~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L 898 (1153)
T PLN03210 849 -----------------------------SDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETV 898 (1153)
T ss_pred -----------------------------CEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCee
Confidence 26888899888 688889999999999999865444688888889999999
Q ss_pred eCCCCc
Q 038036 552 DLSENN 557 (638)
Q Consensus 552 ~Ls~n~ 557 (638)
++++|.
T Consensus 899 ~l~~C~ 904 (1153)
T PLN03210 899 DFSDCG 904 (1153)
T ss_pred ecCCCc
Confidence 999885
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=3.6e-22 Score=231.88 Aligned_cols=287 Identities=22% Similarity=0.263 Sum_probs=157.2
Q ss_pred CCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEe
Q 038036 138 SSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDL 217 (638)
Q Consensus 138 ~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l 217 (638)
.+|+.|++.++.+. .++..+..+++|+.|+++++.....+| .++.+++|++|++++|.....+|..+..+++|+.|++
T Consensus 611 ~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L 688 (1153)
T PLN03210 611 ENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM 688 (1153)
T ss_pred cCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence 44455555554444 334444445555555554443222333 2444455555555554433344444455555555555
Q ss_pred ecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCccc-
Q 038036 218 QSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFT- 296 (638)
Q Consensus 218 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~- 296 (638)
++|.....+|..+ .+++|+.|++++|.....+|.. ..+|+.|++++|.+. .+|. . ..+++|+.|++.++...
T Consensus 689 ~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~-~-~~l~~L~~L~l~~~~~~~ 761 (1153)
T PLN03210 689 SRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPS-N-LRLENLDELILCEMKSEK 761 (1153)
T ss_pred CCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccc-c-ccccccccccccccchhh
Confidence 5443333333322 3445555555554333233321 234555555555443 2332 1 13444555544442211
Q ss_pred ------ccccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCC-cCCCCccccccccCCCCCcEEEcCCCcc
Q 038036 297 ------GSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNN-NFSNITGAIRILMGCKNLRMLLLCKKFF 369 (638)
Q Consensus 297 ------~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~l~~~~~ 369 (638)
...+.....+++|+.|++++|.....+|..+..+++|+.|++++| .+..++.. ..+++|+.|++++|..
T Consensus 762 l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~----~~L~sL~~L~Ls~c~~ 837 (1153)
T PLN03210 762 LWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG----INLESLESLDLSGCSR 837 (1153)
T ss_pred ccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC----CCccccCEEECCCCCc
Confidence 011111223456777777777666667777777777777777775 34444432 2567777777777655
Q ss_pred cccCCcchhhhccccCCCCccEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcC
Q 038036 370 HEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSI 447 (638)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i 447 (638)
...++. ...+++.|++++|.+. .+|.++..+++|+.|++++|.-...+|..+..+++|+.+++++|.-
T Consensus 838 L~~~p~---------~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~ 905 (1153)
T PLN03210 838 LRTFPD---------ISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGA 905 (1153)
T ss_pred cccccc---------cccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcc
Confidence 443332 2357888888888887 5677888889999999988754446676777888888888888863
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.88 E-value=4.6e-25 Score=208.60 Aligned_cols=279 Identities=20% Similarity=0.180 Sum_probs=196.9
Q ss_pred CCCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCC-ccccccccHHHHhcCCCCc
Q 038036 35 KARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSY-NSFSGQFLSSFFQLAENLI 113 (638)
Q Consensus 35 ~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~-n~i~~~~~~~~~~~~~~L~ 113 (638)
+...++|.|..|.|+...+.+|+.+++||.||||+|.|+ .|..++|.++..|..|-+.+ |+|+ .+|...|.++..|+
T Consensus 66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slq 143 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQ 143 (498)
T ss_pred CCcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHH
Confidence 457889999999998777788999999999999999998 78888999999977776666 8898 78888899999999
Q ss_pred EEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEccccccc------------ccCCcc
Q 038036 114 TLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLS------------GSIPDD 181 (638)
Q Consensus 114 ~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~------------~~~~~~ 181 (638)
.|.+.-|++.-.....+. .++++..|.+.+|.+...-...|..+..++++.+..|.+. ...|..
T Consensus 144 rLllNan~i~Cir~~al~----dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ie 219 (498)
T KOG4237|consen 144 RLLLNANHINCIRQDALR----DLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIE 219 (498)
T ss_pred HHhcChhhhcchhHHHHH----HhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhh
Confidence 999888877654444443 7889999999999888444447888888888888877632 112222
Q ss_pred ccCCCCCCEEEccCCCCccccCccccC-CCCCCEEEeecCcCcccCC-cccCCCCCCCEEEccCCCCCCCcchhhcCCCC
Q 038036 182 ISAATSLQEISLPGNQLSGAISDGVGN-LTSLSMLDLQSNKFSGLIP-QDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTN 259 (638)
Q Consensus 182 ~~~l~~L~~L~L~~n~i~~~~~~~l~~-l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~ 259 (638)
++......-..+...++....+..|.. +..+..--.+.+....+.| ..|..+++|++|+|++|+++.+.+.+|.+...
T Consensus 220 tsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~ 299 (498)
T KOG4237|consen 220 TSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAE 299 (498)
T ss_pred cccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhh
Confidence 333333333333333333222222211 1112111112222222323 34777888888888888888777788888888
Q ss_pred CcEEEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCccc
Q 038036 260 LITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIV 320 (638)
Q Consensus 260 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~ 320 (638)
++.|.|..|++. .+....|.++..|+.|++.+|+|+...|..|.....|.+|.+-.|.+.
T Consensus 300 l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 300 LQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred hhhhhcCcchHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 888888888886 566667888888888888888888777888888888888888777653
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.87 E-value=7.7e-24 Score=200.41 Aligned_cols=148 Identities=19% Similarity=0.178 Sum_probs=91.7
Q ss_pred EECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEEccc-
Q 038036 41 LWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSH- 119 (638)
Q Consensus 41 L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~- 119 (638)
++-++-+++ .+|..+. .....++|..|+|+ .+|..+|+.+++|+.|||++|.|+...|. .|+++++|..|-+.+
T Consensus 51 VdCr~~GL~-eVP~~LP--~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~-AF~GL~~l~~Lvlyg~ 125 (498)
T KOG4237|consen 51 VDCRGKGLT-EVPANLP--PETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPD-AFKGLASLLSLVLYGN 125 (498)
T ss_pred EEccCCCcc-cCcccCC--CcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChH-hhhhhHhhhHHHhhcC
Confidence 444454554 3444332 35566788888887 78888888888888888888888844444 445566666555544
Q ss_pred CcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCC
Q 038036 120 NMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQ 197 (638)
Q Consensus 120 n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 197 (638)
|+|+......+. ++..|+.|.+.-|++.-...+.|..++.|..|.+.+|.+...-..+|..+..++.+.+..|.
T Consensus 126 NkI~~l~k~~F~----gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 126 NKITDLPKGAFG----GLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred CchhhhhhhHhh----hHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 666644333333 66666666666666665555666666666666666666653222255566666666665554
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.82 E-value=1.3e-19 Score=195.24 Aligned_cols=61 Identities=25% Similarity=0.296 Sum_probs=32.5
Q ss_pred cCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecccCceeecCC
Q 038036 522 KFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIP 587 (638)
Q Consensus 522 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p 587 (638)
++|+.|++++|.++ .+|... .+|+.|++++|+++ .+|..+..++.|+.|+|++|++++.+|
T Consensus 402 s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 402 SELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred cCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHH
Confidence 34555555555555 344322 34555555555555 455555555555555555555555444
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.82 E-value=2.8e-19 Score=192.82 Aligned_cols=43 Identities=19% Similarity=0.292 Sum_probs=24.9
Q ss_pred CCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccc
Q 038036 523 FLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSI 566 (638)
Q Consensus 523 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l 566 (638)
+|+.|++++|+++ .+|+.+.+++.|+.|+|++|++++..|..+
T Consensus 423 ~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 423 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred hhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 3455666666665 455556666666666666666665554444
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.73 E-value=1.8e-17 Score=180.22 Aligned_cols=55 Identities=36% Similarity=0.574 Sum_probs=29.4
Q ss_pred CccEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCc
Q 038036 388 NLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSIS 448 (638)
Q Consensus 388 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~ 448 (638)
+|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+ .++|++|++++|.+.
T Consensus 326 sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt 380 (754)
T PRK15370 326 GLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT 380 (754)
T ss_pred cceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC
Confidence 44555555555443 333332 46666666666665 344433 246666666666665
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.72 E-value=3.9e-17 Score=177.61 Aligned_cols=202 Identities=23% Similarity=0.372 Sum_probs=89.4
Q ss_pred CeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEE
Q 038036 37 RVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLN 116 (638)
Q Consensus 37 ~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~ 116 (638)
+.+.|++++++++. +|..+. ++|+.|+|++|+++ .+|...+ .+|++|++++|.++ .+|..+ .++|+.|+
T Consensus 179 ~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lt-sLP~~l---~~~L~~L~ 247 (754)
T PRK15370 179 NKTELRLKILGLTT-IPACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLT-SIPATL---PDTIQEME 247 (754)
T ss_pred CceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccc-cCChhh---hccccEEE
Confidence 44555555555542 343332 34555555555555 4444332 24555555555555 344332 23455555
Q ss_pred cccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCC
Q 038036 117 VSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGN 196 (638)
Q Consensus 117 Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 196 (638)
|++|.+. .+|..+ ..+|+.|++++|.++ .+|..+. ++|++|++++|.++ .+|..+. ++|++|++++|
T Consensus 248 Ls~N~L~-~LP~~l------~s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N 314 (754)
T PRK15370 248 LSINRIT-ELPERL------PSALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSN 314 (754)
T ss_pred CcCCccC-cCChhH------hCCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCC
Confidence 5555554 222211 124555555555554 3343332 34555555555544 2333221 23445555555
Q ss_pred CCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccc
Q 038036 197 QLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFR 271 (638)
Q Consensus 197 ~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~ 271 (638)
.+.. +|..+ .++|+.|++++|.++. +|..+. ++|+.|++++|+++ .+|..+. +.|+.|++++|.+.
T Consensus 315 ~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt 380 (754)
T PRK15370 315 SLTA-LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT 380 (754)
T ss_pred cccc-CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC
Confidence 4442 22221 1344455555544443 232221 34444444444444 2333221 34444444444443
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.72 E-value=1e-18 Score=176.89 Aligned_cols=185 Identities=25% Similarity=0.265 Sum_probs=81.4
Q ss_pred CCCCcCEEEccCCcCCccCCccCCCC---CCCcEEEcccccccc----cCCccccCC-CCCCEEEccCCCCccc----cC
Q 038036 136 SLSSLKILDFSYNDFSGQLPPGLGNC---SKLQTFRAGFNYLSG----SIPDDISAA-TSLQEISLPGNQLSGA----IS 203 (638)
Q Consensus 136 ~l~~L~~L~ls~n~i~~~~~~~l~~l---~~L~~L~l~~n~~~~----~~~~~~~~l-~~L~~L~L~~n~i~~~----~~ 203 (638)
.+++|+.|++++|.+....+..+..+ ++|++|++++|.+.+ .+...+..+ ++|++|++++|.+++. .+
T Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~ 158 (319)
T cd00116 79 KGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALA 158 (319)
T ss_pred hcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHH
Confidence 34455555555555443222222222 225555555555441 112223334 5555566655555421 12
Q ss_pred ccccCCCCCCEEEeecCcCccc----CCcccCCCCCCCEEEccCCCCCCCc----chhhcCCCCCcEEEccCcccccccC
Q 038036 204 DGVGNLTSLSMLDLQSNKFSGL----IPQDIGKLTNLKSLQLHTNSLSGFL----PQSLMNCTNLITLNLRINNFRGDLS 275 (638)
Q Consensus 204 ~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~i~~~~----~~~l~~l~~L~~L~L~~n~l~~~~~ 275 (638)
..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++.. ...+..+++|++|++++|.+.+...
T Consensus 159 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~ 238 (319)
T cd00116 159 KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGA 238 (319)
T ss_pred HHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHH
Confidence 2334445555555555555421 1122333445566666555554221 2233445556666665555542111
Q ss_pred ccc----ccCCCCccEEecCCCcccc----cccccCcCCCCCCEEEcCCCccc
Q 038036 276 AYN----FSTLHNLHTIDLGNNNFTG----SFPLTLTSCKVLTAIRLSRNKIV 320 (638)
Q Consensus 276 ~~~----~~~~~~L~~L~l~~n~i~~----~~~~~l~~~~~L~~L~L~~n~i~ 320 (638)
... ....+.|+.|++++|.+++ .+...+..+++|+.+++++|.+.
T Consensus 239 ~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 239 AALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred HHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 000 0112455555555555541 12223333455555555555554
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.72 E-value=9.2e-19 Score=177.16 Aligned_cols=236 Identities=26% Similarity=0.279 Sum_probs=106.1
Q ss_pred CCCCcCEEEccCCcCCc------cCCccCCCCCCCcEEEcccccccccCCccccCCCC---CCEEEccCCCCcc----cc
Q 038036 136 SLSSLKILDFSYNDFSG------QLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATS---LQEISLPGNQLSG----AI 202 (638)
Q Consensus 136 ~l~~L~~L~ls~n~i~~------~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~---L~~L~L~~n~i~~----~~ 202 (638)
..+.+++++++++.+.+ .++..+..+++|++|++++|.+....+..+..+.. |++|++++|.+.. .+
T Consensus 49 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l 128 (319)
T cd00116 49 PQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLL 128 (319)
T ss_pred hCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHH
Confidence 34455555555554431 12334445666666666666665434444433333 6666666665542 11
Q ss_pred CccccCC-CCCCEEEeecCcCccc----CCcccCCCCCCCEEEccCCCCCCC----cchhhcCCCCCcEEEccCcccccc
Q 038036 203 SDGVGNL-TSLSMLDLQSNKFSGL----IPQDIGKLTNLKSLQLHTNSLSGF----LPQSLMNCTNLITLNLRINNFRGD 273 (638)
Q Consensus 203 ~~~l~~l-~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~L~~n~l~~~ 273 (638)
...+..+ ++|+.|++++|.+++. ++..+..+++|++|++++|.+++. ++..+..+
T Consensus 129 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~---------------- 192 (319)
T cd00116 129 AKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKAN---------------- 192 (319)
T ss_pred HHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhC----------------
Confidence 1223333 4555555555554421 112233334455555554444421 11222333
Q ss_pred cCcccccCCCCccEEecCCCccccc----ccccCcCCCCCCEEEcCCCcccccCchhhhc-----CCCCCEEEccCCcCC
Q 038036 274 LSAYNFSTLHNLHTIDLGNNNFTGS----FPLTLTSCKVLTAIRLSRNKIVGQISPEILA-----LESLSYLSITNNNFS 344 (638)
Q Consensus 274 ~~~~~~~~~~~L~~L~l~~n~i~~~----~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~-----l~~L~~L~L~~n~l~ 344 (638)
++|+.|++++|.+++. +...+..+++|++|++++|.+++.....+.. .+.|++|++++|.++
T Consensus 193 ---------~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 193 ---------CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred ---------CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 4455555555544321 2223344455555555555554322222211 245666666665554
Q ss_pred CC--ccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCC-CCccEEEeeCCc
Q 038036 345 NI--TGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAF-QNLLVLGIGDCE 398 (638)
Q Consensus 345 ~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~ 398 (638)
+. ......+..+++|+.+++++|.+............ ..+ +.++++++.++.
T Consensus 264 ~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 264 DDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESL--LEPGNELESLWVKDDS 318 (319)
T ss_pred cHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHH--hhcCCchhhcccCCCC
Confidence 21 11123334445666666666665543222111111 122 567777766654
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.59 E-value=2.3e-17 Score=138.88 Aligned_cols=162 Identities=30% Similarity=0.477 Sum_probs=101.5
Q ss_pred CCCccEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhhccchhhh
Q 038036 386 FQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQE 465 (638)
Q Consensus 386 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~ 465 (638)
+.+.+.|.+++|+++. +|..+..+.+|+.|++.+|++. .+|..+..++.|+.|+++-|++. .+|..|++++.|++
T Consensus 32 ~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev-- 106 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV-- 106 (264)
T ss_pred hhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhh--
Confidence 3455666666676663 3445666777777777777776 56666777777777777777765 66777777776664
Q ss_pred ccccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCccc-ccCchhhhcCcCCCeeeCCCCeeeecCChhhhC
Q 038036 466 VKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLN-GSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQ 544 (638)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~ 544 (638)
||+..|++. ..+|..|-.++.|+-|+|++|.+. .+|..+++
T Consensus 107 -------------------------------------ldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~ 148 (264)
T KOG0617|consen 107 -------------------------------------LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGK 148 (264)
T ss_pred -------------------------------------hhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhh
Confidence 333334332 234555555666666666666665 56666666
Q ss_pred CCCCCeeeCCCCcceecCCccccccCCCCeEecccCceeecCCCCCc
Q 038036 545 LTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPSGGQ 591 (638)
Q Consensus 545 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~ 591 (638)
+++|+.|.+.+|.+. .+|..+..++.|++|.+.+|+++-..|+.+.
T Consensus 149 lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppel~~ 194 (264)
T KOG0617|consen 149 LTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPELAN 194 (264)
T ss_pred hcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChhhhh
Confidence 666666666666666 5666666666666666666666644444343
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.56 E-value=3.1e-17 Score=138.08 Aligned_cols=155 Identities=25% Similarity=0.475 Sum_probs=84.5
Q ss_pred CCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEE
Q 038036 160 NCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSL 239 (638)
Q Consensus 160 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 239 (638)
++.+++.|.+++|.++ .+|..+..+.+|+.|++.+|+|. .+|..+..++.|++|++.-|++. ..|..|+.+|.|+.|
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 4455566666666666 45556666666666666666665 45555666666666666666554 445566666666666
Q ss_pred EccCCCCCC-CcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCc
Q 038036 240 QLHTNSLSG-FLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNK 318 (638)
Q Consensus 240 ~L~~n~i~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~ 318 (638)
|+.+|++.. .+|..|..+..|+.|++++|.+. -+|. ..+.+++|+.|.+..|.+. ..|..++.+..|++|++.+|+
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~-dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPP-DVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCCh-hhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccce
Confidence 666655542 34444555555555555555543 2222 3444555555555554444 344444444444444444444
Q ss_pred cc
Q 038036 319 IV 320 (638)
Q Consensus 319 i~ 320 (638)
++
T Consensus 185 l~ 186 (264)
T KOG0617|consen 185 LT 186 (264)
T ss_pred ee
Confidence 44
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.26 E-value=9e-12 Score=135.54 Aligned_cols=116 Identities=35% Similarity=0.554 Sum_probs=104.7
Q ss_pred CeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecccC
Q 038036 501 PAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANN 580 (638)
Q Consensus 501 ~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n 580 (638)
..|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|..+..+++|+.|+|++|
T Consensus 421 ~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N 500 (623)
T PLN03150 421 DGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500 (623)
T ss_pred EEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeecCCCCC--cCCCcCCCccCCCCCCCCCCCCCCCCCC
Q 038036 581 DLQGQIPSGG--QFLTFPSSSFEGNPRFCGDIVERQSSCY 618 (638)
Q Consensus 581 ~l~~~~p~~~--~~~~l~~~~~~~n~~lc~~~~~~~~~c~ 618 (638)
+++|.+|... ....+..+.+.+|+.+||.+... .|.
T Consensus 501 ~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~--~C~ 538 (623)
T PLN03150 501 SLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLR--ACG 538 (623)
T ss_pred cccccCChHHhhccccCceEEecCCccccCCCCCC--CCc
Confidence 9999999752 23445677899999999976434 675
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.17 E-value=2e-12 Score=121.94 Aligned_cols=246 Identities=20% Similarity=0.260 Sum_probs=132.9
Q ss_pred CCCCeEEEECCCCCcee----eccccCcCCCCCCEEECCCCCCCCC----Cccc------cccccceecEEEcCCccccc
Q 038036 34 SKARVTHLWLPYRGLSG----SIYPFIGNLTHLCHLNLSHNHLSGP----LAIN------SFSFVIHLETLDLSYNSFSG 99 (638)
Q Consensus 34 ~~~~v~~L~l~~~~~~~----~~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~------~~~~~~~L~~L~Ls~n~i~~ 99 (638)
....+++|+|++|.+.. .+.+.+.+.+.|+..++|.. ++|. +|.. +..++++|++||||.|-+..
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 35678888898888754 23445667778888888763 2232 2221 12244567777777776654
Q ss_pred cccH---HHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccc
Q 038036 100 QFLS---SFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSG 176 (638)
Q Consensus 100 ~~~~---~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~ 176 (638)
..++ .+...+..|++|.|.+|.+.-.....++. .|..|. .......-+.|+++..++|++..
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~------al~~l~---------~~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR------ALFELA---------VNKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH------HHHHHH---------HHhccCCCcceEEEEeecccccc
Confidence 4443 33445666666666666554222221110 000000 11122233456666666665542
Q ss_pred c----CCccccCCCCCCEEEccCCCCcc----ccCccccCCCCCCEEEeecCcCccc----CCcccCCCCCCCEEEccCC
Q 038036 177 S----IPDDISAATSLQEISLPGNQLSG----AISDGVGNLTSLSMLDLQSNKFSGL----IPQDIGKLTNLKSLQLHTN 244 (638)
Q Consensus 177 ~----~~~~~~~l~~L~~L~L~~n~i~~----~~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n 244 (638)
. +...|...+.|+.+.+..|.|.. .+...+..+++|++||+.+|.++.. +...+..+++|+.|++++|
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC 251 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence 1 12224445566666666665542 1223455666777777777666532 2234555667777777777
Q ss_pred CCCCCcchhh-----cCCCCCcEEEccCcccccccC---cccccCCCCccEEecCCCcc
Q 038036 245 SLSGFLPQSL-----MNCTNLITLNLRINNFRGDLS---AYNFSTLHNLHTIDLGNNNF 295 (638)
Q Consensus 245 ~i~~~~~~~l-----~~l~~L~~L~L~~n~l~~~~~---~~~~~~~~~L~~L~l~~n~i 295 (638)
.+......++ ...|.|+.|.+.+|.++.+.. .......+.|+.|++++|.+
T Consensus 252 ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 252 LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 6664433322 235677777777777653211 11234467777788888777
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=5.6e-12 Score=122.27 Aligned_cols=137 Identities=23% Similarity=0.220 Sum_probs=68.3
Q ss_pred CCCCccEEecCCCccccccc-ccCcCCCCCCEEEcCCCccccc--CchhhhcCCCCCEEEccCCcCCCCccccccccCCC
Q 038036 281 TLHNLHTIDLGNNNFTGSFP-LTLTSCKVLTAIRLSRNKIVGQ--ISPEILALESLSYLSITNNNFSNITGAIRILMGCK 357 (638)
Q Consensus 281 ~~~~L~~L~l~~n~i~~~~~-~~l~~~~~L~~L~L~~n~i~~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 357 (638)
++.+|+.+.+.++.+..... .....|++++.|+|++|-+... +.....++|+|+.|+++.|.+....+
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~--------- 189 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS--------- 189 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcc---------
Confidence 34455556666555542111 2344555556666665554432 12233355555555555555442221
Q ss_pred CCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCccccc-chHHhhcCCCCCEEecCCCccccCcCccccCCCC
Q 038036 358 NLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQ-IPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPN 436 (638)
Q Consensus 358 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 436 (638)
... ...++.|+.|.++.|+++-. +...+..+|+|+.|++..|............+..
T Consensus 190 -----------------s~~-----~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~ 247 (505)
T KOG3207|consen 190 -----------------SNT-----TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQT 247 (505)
T ss_pred -----------------ccc-----hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhH
Confidence 100 01455666777777766532 2333455677777777766422222223334556
Q ss_pred CCEEEccCCcCc
Q 038036 437 LFYIDLSYNSIS 448 (638)
Q Consensus 437 L~~L~L~~n~i~ 448 (638)
|++|||++|++.
T Consensus 248 L~~LdLs~N~li 259 (505)
T KOG3207|consen 248 LQELDLSNNNLI 259 (505)
T ss_pred HhhccccCCccc
Confidence 666666666654
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=6.7e-12 Score=121.77 Aligned_cols=211 Identities=26% Similarity=0.269 Sum_probs=89.8
Q ss_pred CCCCCCEEECCCCCCCCCCcc-ccccccceecEEEcCCcccccc-ccHHHHhcCCCCcEEEcccCcCcccCCCccccCCC
Q 038036 58 NLTHLCHLNLSHNHLSGPLAI-NSFSFVIHLETLDLSYNSFSGQ-FLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNK 135 (638)
Q Consensus 58 ~l~~L~~L~Ls~n~l~~~~~~-~~~~~~~~L~~L~Ls~n~i~~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~ 135 (638)
++++|+.+.|.++.+.. .+. .....++.++.|||+.|-+..- ....+...+++|+.|+++.|++.....+... .
T Consensus 119 n~kkL~~IsLdn~~V~~-~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~---~ 194 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVED-AGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT---L 194 (505)
T ss_pred hHHhhhheeecCccccc-cchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch---h
Confidence 34555555555554431 111 2333455555555555544321 1223344455555555555554422221111 0
Q ss_pred CCCCcCEEEccCCcCCcc-CCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCE
Q 038036 136 SLSSLKILDFSYNDFSGQ-LPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSM 214 (638)
Q Consensus 136 ~l~~L~~L~ls~n~i~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~ 214 (638)
.+++|+.|.++.|.++.. +...+..+ ++|+.|++..|....+......-+..|+.
T Consensus 195 ~l~~lK~L~l~~CGls~k~V~~~~~~f------------------------Psl~~L~L~~N~~~~~~~~~~~i~~~L~~ 250 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKDVQWILLTF------------------------PSLEVLYLEANEIILIKATSTKILQTLQE 250 (505)
T ss_pred hhhhhheEEeccCCCCHHHHHHHHHhC------------------------CcHHHhhhhcccccceecchhhhhhHHhh
Confidence 234455555555544421 11122334 44444554444311122222233444555
Q ss_pred EEeecCcCcccC-CcccCCCCCCCEEEccCCCCCCCc-chh-----hcCCCCCcEEEccCcccccccCcccccCCCCccE
Q 038036 215 LDLQSNKFSGLI-PQDIGKLTNLKSLQLHTNSLSGFL-PQS-----LMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHT 287 (638)
Q Consensus 215 L~l~~n~l~~~~-~~~l~~l~~L~~L~L~~n~i~~~~-~~~-----l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~ 287 (638)
|+|++|.+-... -...+.++.|+.|.++.+++...- |+. ...+++|+.|++..|++.+--....+..+++|+.
T Consensus 251 LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~ 330 (505)
T KOG3207|consen 251 LDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKH 330 (505)
T ss_pred ccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhh
Confidence 555554443221 012344455555555555444221 111 2344666666666666642111123334455666
Q ss_pred EecCCCccc
Q 038036 288 IDLGNNNFT 296 (638)
Q Consensus 288 L~l~~n~i~ 296 (638)
|.+..|.+.
T Consensus 331 l~~~~n~ln 339 (505)
T KOG3207|consen 331 LRITLNYLN 339 (505)
T ss_pred hhccccccc
Confidence 666666554
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.13 E-value=3.2e-12 Score=127.84 Aligned_cols=149 Identities=30% Similarity=0.470 Sum_probs=83.5
Q ss_pred CccEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhhccchhhhcc
Q 038036 388 NLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVK 467 (638)
Q Consensus 388 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~ 467 (638)
.|+.+.+..|.+. .+|..+.++..|+.|+|+.|++. ..|..+..+| |+.|-+++|+++ .+|+.++.+..|.
T Consensus 99 ~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~----- 169 (722)
T KOG0532|consen 99 SLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLA----- 169 (722)
T ss_pred HHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHH-----
Confidence 3444444445444 44555666666666666666665 4555555444 566666666664 4555555444333
Q ss_pred ccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCC
Q 038036 468 NRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTN 547 (638)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 547 (638)
.||.+.|.+. .+|..++++.+|+.|.+..|++. .+|+.+. --.
T Consensus 170 ----------------------------------~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~Lp 212 (722)
T KOG0532|consen 170 ----------------------------------HLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLP 212 (722)
T ss_pred ----------------------------------Hhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCc
Confidence 3445555554 45555666666666666666655 4455454 334
Q ss_pred CCeeeCCCCcceecCCccccccCCCCeEecccCcee
Q 038036 548 LEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQ 583 (638)
Q Consensus 548 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 583 (638)
|..||+|+|+++ .+|..|..|..|++|-|.+|+++
T Consensus 213 Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 213 LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 556666666666 56666666666666666666665
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.10 E-value=2.2e-11 Score=112.34 Aligned_cols=229 Identities=23% Similarity=0.238 Sum_probs=106.4
Q ss_pred hcCCCCcEEEcccCc--C--cccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccc
Q 038036 107 QLAENLITLNVSHNM--F--SGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDI 182 (638)
Q Consensus 107 ~~~~~L~~L~Ls~n~--l--~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~ 182 (638)
..+..|..|.++... + +.+++..+.+.+.-+++|+.+.++.+.-. .+.+....-|.|+++.+.+..+. ..| .+
T Consensus 179 df~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~-~i~~~~~~kptl~t~~v~~s~~~-~~~-~l 255 (490)
T KOG1259|consen 179 DFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTE-NIVDIELLKPTLQTICVHNTTIQ-DVP-SL 255 (490)
T ss_pred HhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchh-heeceeecCchhheeeeeccccc-ccc-cc
Confidence 345566666665442 1 22344444444445666677777666433 11222223355666665554333 111 11
Q ss_pred cCCCCCCEEEccCC---CCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCC
Q 038036 183 SAATSLQEISLPGN---QLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTN 259 (638)
Q Consensus 183 ~~l~~L~~L~L~~n---~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~ 259 (638)
-....+. |.... -..|..-..+.....|+++|+++|.|+.+ .++..-.|.++.|++++|.+... ..+..+++
T Consensus 256 ~pe~~~~--D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~i-DESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~ 330 (490)
T KOG1259|consen 256 LPETILA--DPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQI-DESVKLAPKLRRLILSQNRIRTV--QNLAELPQ 330 (490)
T ss_pred cchhhhc--CccCCCCCccCCceEEecchHhhhhhccccccchhhh-hhhhhhccceeEEeccccceeee--hhhhhccc
Confidence 0111111 11110 01111112222334555566666655522 33444455566666666655522 23555566
Q ss_pred CcEEEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCccccc-CchhhhcCCCCCEEEc
Q 038036 260 LITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQ-ISPEILALESLSYLSI 338 (638)
Q Consensus 260 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~-~~~~l~~l~~L~~L~L 338 (638)
|+.|++++|.+.. +.. .-..+.+++.|.+.+|.+.. -..+..+-+|..|++++|+|... -...++++|.|+.+.+
T Consensus 331 L~~LDLS~N~Ls~-~~G-wh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L 406 (490)
T KOG1259|consen 331 LQLLDLSGNLLAE-CVG-WHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRL 406 (490)
T ss_pred ceEeecccchhHh-hhh-hHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhh
Confidence 6666666665542 211 11234555666666665541 22344455556666666665421 1234556666777777
Q ss_pred cCCcCCCCc
Q 038036 339 TNNNFSNIT 347 (638)
Q Consensus 339 ~~n~l~~~~ 347 (638)
.+|++..++
T Consensus 407 ~~NPl~~~v 415 (490)
T KOG1259|consen 407 TGNPLAGSV 415 (490)
T ss_pred cCCCccccc
Confidence 777666544
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.09 E-value=4.7e-12 Score=119.55 Aligned_cols=185 Identities=18% Similarity=0.223 Sum_probs=125.5
Q ss_pred CCCCcCEEEccCCcCCccCCc----cCCCCCCCcEEEccccccccc-------------CCccccCCCCCCEEEccCCCC
Q 038036 136 SLSSLKILDFSYNDFSGQLPP----GLGNCSKLQTFRAGFNYLSGS-------------IPDDISAATSLQEISLPGNQL 198 (638)
Q Consensus 136 ~l~~L~~L~ls~n~i~~~~~~----~l~~l~~L~~L~l~~n~~~~~-------------~~~~~~~l~~L~~L~L~~n~i 198 (638)
.+++|++|+||+|-+....+. -+.++..|++|.+.+|.+.-. .......-+.|+++...+|.+
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 445555555555555422222 223455666666666654411 112234457899999999987
Q ss_pred ccc----cCccccCCCCCCEEEeecCcCccc----CCcccCCCCCCCEEEccCCCCCCC----cchhhcCCCCCcEEEcc
Q 038036 199 SGA----ISDGVGNLTSLSMLDLQSNKFSGL----IPQDIGKLTNLKSLQLHTNSLSGF----LPQSLMNCTNLITLNLR 266 (638)
Q Consensus 199 ~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~L~ 266 (638)
... +...|+..+.|+.+.+..|.|... ....+..+++|++|||..|.++.. +...+..+++|+.|+++
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 633 234567789999999999987532 234577899999999999988743 33456778999999999
Q ss_pred CcccccccC----cccccCCCCccEEecCCCccccc----ccccCcCCCCCCEEEcCCCccc
Q 038036 267 INNFRGDLS----AYNFSTLHNLHTIDLGNNNFTGS----FPLTLTSCKVLTAIRLSRNKIV 320 (638)
Q Consensus 267 ~n~l~~~~~----~~~~~~~~~L~~L~l~~n~i~~~----~~~~l~~~~~L~~L~L~~n~i~ 320 (638)
+|.+...-. ...-...|+|+.+.+.+|.++.. +...+...+.|..|++++|.+.
T Consensus 250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred ccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 998863221 11223478999999999998752 2334456789999999999993
No 30
>PLN03150 hypothetical protein; Provisional
Probab=99.09 E-value=3.9e-10 Score=122.81 Aligned_cols=128 Identities=34% Similarity=0.518 Sum_probs=98.5
Q ss_pred CCCCCCCCCc----CccceEECC-----CCCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccce
Q 038036 16 LNWSFSTDCC----FWEGIKCDS-----KARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIH 86 (638)
Q Consensus 16 ~~w~~~~~~~----~w~g~~c~~-----~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 86 (638)
.+|+ +..|+ .|.|+.|.. ...|+.|+|+++.+.|.+|+.++.+++|++|+|++|.+.|.+|.. +..++.
T Consensus 390 ~~W~-g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~-~~~l~~ 467 (623)
T PLN03150 390 FGWN-GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS-LGSITS 467 (623)
T ss_pred CCCC-CCCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChH-HhCCCC
Confidence 4797 33442 699999952 235999999999999999999999999999999999999877754 567888
Q ss_pred ecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCc
Q 038036 87 LETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYND 149 (638)
Q Consensus 87 L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~ 149 (638)
|+.|+|++|++++.+|..+ ..+++|++|+|++|.+++.+|..+.. ...++..+++.+|.
T Consensus 468 L~~LdLs~N~lsg~iP~~l-~~L~~L~~L~Ls~N~l~g~iP~~l~~---~~~~~~~l~~~~N~ 526 (623)
T PLN03150 468 LEVLDLSYNSFNGSIPESL-GQLTSLRILNLNGNSLSGRVPAALGG---RLLHRASFNFTDNA 526 (623)
T ss_pred CCEEECCCCCCCCCCchHH-hcCCCCCEEECcCCcccccCChHHhh---ccccCceEEecCCc
Confidence 9999999998887777654 45888888888888888777764431 12345566666664
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.07 E-value=2.9e-10 Score=118.42 Aligned_cols=69 Identities=35% Similarity=0.536 Sum_probs=32.4
Q ss_pred hhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecccCceeecCC
Q 038036 516 IEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIP 587 (638)
Q Consensus 516 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p 587 (638)
..+..+..+..+.+.+|++. ..+..++.++.++.|++++|.++.. +. +..+.+++.|++++|.+...+|
T Consensus 226 ~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 226 SSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred hhhhhcccccccccCCceee-eccchhccccccceecccccccccc-cc-ccccCccCEEeccCccccccch
Confidence 33444444555555555544 2244444555555555555555422 22 4444555555555555443333
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.04 E-value=8.3e-12 Score=124.91 Aligned_cols=170 Identities=29% Similarity=0.467 Sum_probs=107.0
Q ss_pred CEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecC
Q 038036 141 KILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSN 220 (638)
Q Consensus 141 ~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n 220 (638)
...|++.|++. .+|..++.|..|+.+.+..|.+. .+|..+.++..|++++++.|++. .+|..+..++ |+.|-+++|
T Consensus 78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecC
Confidence 34556666665 56666666666666666666665 56666666666666666666666 5555565554 666666666
Q ss_pred cCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCccccccc
Q 038036 221 KFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFP 300 (638)
Q Consensus 221 ~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~ 300 (638)
+++ .+|..++.++.|.+||.+.|.+. .+|..+..+.+|+.|.++.|.+. +++. .+. .-.|..||++.|++. .+|
T Consensus 154 kl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~-El~-~LpLi~lDfScNkis-~iP 227 (722)
T KOG0532|consen 154 KLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPE-ELC-SLPLIRLDFSCNKIS-YLP 227 (722)
T ss_pred ccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCH-HHh-CCceeeeecccCcee-ecc
Confidence 666 44556666666666777766666 45566666666777766666665 3443 223 234566677777666 566
Q ss_pred ccCcCCCCCCEEEcCCCccc
Q 038036 301 LTLTSCKVLTAIRLSRNKIV 320 (638)
Q Consensus 301 ~~l~~~~~L~~L~L~~n~i~ 320 (638)
..|..++.|++|.|.+|.+.
T Consensus 228 v~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 228 VDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhhhhhhheeeeeccCCCC
Confidence 66666777777777766665
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.02 E-value=2.1e-10 Score=101.97 Aligned_cols=105 Identities=32% Similarity=0.468 Sum_probs=23.5
Q ss_pred CCCEEEccCCCCccccCcccc-CCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhh-cCCCCCcEEE
Q 038036 187 SLQEISLPGNQLSGAISDGVG-NLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSL-MNCTNLITLN 264 (638)
Q Consensus 187 ~L~~L~L~~n~i~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l-~~l~~L~~L~ 264 (638)
.+++|+|++|.|..+ +.+. .+.+|+.|++++|.++.+ +.+..+++|++|++++|.|+.. ...+ ..+++|+.|+
T Consensus 20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--EEE
T ss_pred ccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcc-ccchHHhCCcCCEEE
Confidence 445555555554422 2232 344455555555555433 2344455555555555555532 2222 2345555555
Q ss_pred ccCcccccccCcccccCCCCccEEecCCCccc
Q 038036 265 LRINNFRGDLSAYNFSTLHNLHTIDLGNNNFT 296 (638)
Q Consensus 265 L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~ 296 (638)
+++|++...-....+..+++|+.|++.+|+++
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 55555542111123334444455555444443
No 34
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.01 E-value=2.5e-10 Score=126.82 Aligned_cols=274 Identities=26% Similarity=0.273 Sum_probs=146.9
Q ss_pred cCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCcc--ccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCC
Q 038036 57 GNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNS--FSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNN 134 (638)
Q Consensus 57 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~--i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~ 134 (638)
.+....+.+.+.+|.+. .++... ..++|++|-+..|. +. .++..+|..++.|++|||++|.-.+..|...+
T Consensus 520 ~~~~~~rr~s~~~~~~~-~~~~~~--~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~--- 592 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKIE-HIAGSS--ENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIG--- 592 (889)
T ss_pred cchhheeEEEEeccchh-hccCCC--CCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHh---
Confidence 34466777777777665 343322 45568888887775 44 66777777788888888887765556666555
Q ss_pred CCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCc--cccCccccCCCCC
Q 038036 135 KSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLS--GAISDGVGNLTSL 212 (638)
Q Consensus 135 ~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~--~~~~~~l~~l~~L 212 (638)
.+-+|++|+++++.+. .+|..+.+++.|.+|++..+.....+|.....+.+|++|.+...... ...-..+.++.+|
T Consensus 593 -~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L 670 (889)
T KOG4658|consen 593 -ELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHL 670 (889)
T ss_pred -hhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccch
Confidence 6778888888888877 77778888888888888777655455555566788888877655421 1122333444555
Q ss_pred CEEEeecCcCcccCCcccCCCCCCC----EEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccC------C
Q 038036 213 SMLDLQSNKFSGLIPQDIGKLTNLK----SLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFST------L 282 (638)
Q Consensus 213 ~~L~l~~n~l~~~~~~~l~~l~~L~----~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~------~ 282 (638)
+.+....... .+...+..+++|. .+.+.++... ..+..+..+.+|+.|.+.++.+.. +....... +
T Consensus 671 ~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e-~~~~~~~~~~~~~~f 746 (889)
T KOG4658|consen 671 ENLSITISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISE-IVIEWEESLIVLLCF 746 (889)
T ss_pred hhheeecchh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCch-hhcccccccchhhhH
Confidence 5554433222 0111222222222 2222222222 334456666677777776665542 11000000 1
Q ss_pred CCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCCcCC
Q 038036 283 HNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFS 344 (638)
Q Consensus 283 ~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~ 344 (638)
+++..+.+.++..- ..+.+.-..++|+.|.+..+.....+.+....+..+..+.+..+.+.
T Consensus 747 ~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~ 807 (889)
T KOG4658|consen 747 PNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLE 807 (889)
T ss_pred HHHHHHHhhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccc
Confidence 12222222222111 12222233466666666666555444444444444554444444443
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.95 E-value=9e-10 Score=114.74 Aligned_cols=176 Identities=31% Similarity=0.445 Sum_probs=84.1
Q ss_pred CCCCcEEEcccccccccCCccccCCC-CCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEE
Q 038036 161 CSKLQTFRAGFNYLSGSIPDDISAAT-SLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSL 239 (638)
Q Consensus 161 l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 239 (638)
++.++.|++..+.++ .++....... +|++|++++|.+. .++..+..+++|+.|++++|++... +......+.|+.|
T Consensus 115 ~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~l-~~~~~~~~~L~~L 191 (394)
T COG4886 115 LTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDL-PKLLSNLSNLNNL 191 (394)
T ss_pred ccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhhh-hhhhhhhhhhhhe
Confidence 344555555555554 3444444442 5555555555554 3333445555555555555555532 2222244555555
Q ss_pred EccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcc
Q 038036 240 QLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKI 319 (638)
Q Consensus 240 ~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i 319 (638)
++++|++. .+|........|+.+.+++|.+...+. .+..+.++..+.+.+|++. ..+..+..++.+++|++++|.+
T Consensus 192 ~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~--~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i 267 (394)
T COG4886 192 DLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLS--SLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQI 267 (394)
T ss_pred eccCCccc-cCchhhhhhhhhhhhhhcCCcceecch--hhhhcccccccccCCceee-eccchhccccccceeccccccc
Confidence 55555555 334333334445555555553221111 3344445555555555544 2244445555555555555555
Q ss_pred cccCchhhhcCCCCCEEEccCCcCCC
Q 038036 320 VGQISPEILALESLSYLSITNNNFSN 345 (638)
Q Consensus 320 ~~~~~~~l~~l~~L~~L~L~~n~l~~ 345 (638)
+.... +....+++.|+++++.+..
T Consensus 268 ~~i~~--~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 268 SSISS--LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred ccccc--ccccCccCEEeccCccccc
Confidence 43222 4455555555555555543
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.95 E-value=3.7e-10 Score=100.40 Aligned_cols=125 Identities=26% Similarity=0.377 Sum_probs=35.0
Q ss_pred CCCCCcEEEcccccccccCCcccc-CCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCccc-CCCCCCC
Q 038036 160 NCSKLQTFRAGFNYLSGSIPDDIS-AATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDI-GKLTNLK 237 (638)
Q Consensus 160 ~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~ 237 (638)
++..+++|++++|.+.. + +.++ .+.+|+.|++++|.|+.. +.+..++.|++|++++|+++.+. ..+ ..+++|+
T Consensus 17 n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-C-HHHHHH-TT--
T ss_pred ccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccc-cchHHhCCcCC
Confidence 33445555555555542 2 2233 345556666666665532 34555566666666666665432 222 2356666
Q ss_pred EEEccCCCCCCCc-chhhcCCCCCcEEEccCcccccccC--cccccCCCCccEEe
Q 038036 238 SLQLHTNSLSGFL-PQSLMNCTNLITLNLRINNFRGDLS--AYNFSTLHNLHTID 289 (638)
Q Consensus 238 ~L~L~~n~i~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~--~~~~~~~~~L~~L~ 289 (638)
+|++++|+|.... -..+..+++|+.|++.+|++...-. ...+..+|+|+.||
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 6666666654321 1345566777777777776653211 12344556666655
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.92 E-value=7.6e-10 Score=123.07 Aligned_cols=105 Identities=22% Similarity=0.262 Sum_probs=48.6
Q ss_pred CCcCEEEccCCc--CCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEE
Q 038036 138 SSLKILDFSYND--FSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSML 215 (638)
Q Consensus 138 ~~L~~L~ls~n~--i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L 215 (638)
+.|++|-+..|. +.....+.|..++.|+.||+++|.-.+.+|+.++.+-+||+|+++++.+. .+|..++++..|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 344444444443 22222233444555555555544444445555555555555555555554 444555555555555
Q ss_pred EeecCcCcccCCcccCCCCCCCEEEccC
Q 038036 216 DLQSNKFSGLIPQDIGKLTNLKSLQLHT 243 (638)
Q Consensus 216 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~ 243 (638)
++..+.....+|.....+++|++|.+..
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred ccccccccccccchhhhcccccEEEeec
Confidence 5554443333333333345555554443
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.91 E-value=3.1e-10 Score=104.89 Aligned_cols=129 Identities=22% Similarity=0.253 Sum_probs=81.6
Q ss_pred CCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEE
Q 038036 233 LTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAI 312 (638)
Q Consensus 233 l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L 312 (638)
...|+++||++|.|+ .+.+++.-.|.++.|++++|.+. .+. .+..+++|+.||+++|.++ .+..|-..+-++++|
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~--nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ--NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTL 357 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh--hhhhcccceEeecccchhH-hhhhhHhhhcCEeee
Confidence 346777777777777 44566666777777777777776 333 3666777777777777776 344455566677777
Q ss_pred EcCCCcccccCchhhhcCCCCCEEEccCCcCCCCccccccccCCCCCcEEEcCCCcc
Q 038036 313 RLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFF 369 (638)
Q Consensus 313 ~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~ 369 (638)
.+++|.+.. ...+..+-+|..||+++|++..+.. ....+.+|.|+.+.+.+|.+
T Consensus 358 ~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~lde-V~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 358 KLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDE-VNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred ehhhhhHhh--hhhhHhhhhheeccccccchhhHHH-hcccccccHHHHHhhcCCCc
Confidence 777777642 2445666677777777777765542 23344444444444444443
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.87 E-value=1.4e-09 Score=79.26 Aligned_cols=61 Identities=43% Similarity=0.512 Sum_probs=50.6
Q ss_pred cCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecccCce
Q 038036 522 KFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDL 582 (638)
Q Consensus 522 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l 582 (638)
|+|++|++++|+++...++.|..+++|++|++++|.++...|..|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4678888888888866667888888888888888888877778888888888888888875
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.70 E-value=2e-09 Score=112.29 Aligned_cols=128 Identities=29% Similarity=0.447 Sum_probs=57.4
Q ss_pred CCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCC
Q 038036 109 AENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSL 188 (638)
Q Consensus 109 ~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 188 (638)
+..++.+++..|.+....... ..+.+|+.|++.+|.|. .+...+..+++|++|++++|.++.. ..+..++.|
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l-----~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L 142 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHL-----SKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLL 142 (414)
T ss_pred hHhHHhhccchhhhhhhhccc-----ccccceeeeeccccchh-hcccchhhhhcchheeccccccccc--cchhhccch
Confidence 444555555555544311111 13455556666666555 2222244455555555555555422 123344445
Q ss_pred CEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCC-cccCCCCCCCEEEccCCCCC
Q 038036 189 QEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIP-QDIGKLTNLKSLQLHTNSLS 247 (638)
Q Consensus 189 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~i~ 247 (638)
+.|++++|.|... ..+..++.|+.+++++|++...-+ . ...+.+++.+.+.+|.+.
T Consensus 143 ~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 143 KELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred hhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 5555555554422 233334455555555555443321 0 233444444444444444
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.68 E-value=2.4e-09 Score=111.57 Aligned_cols=106 Identities=25% Similarity=0.343 Sum_probs=46.1
Q ss_pred CCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCC
Q 038036 109 AENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSL 188 (638)
Q Consensus 109 ~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 188 (638)
+++|+.|++.+|++....... ..+++|++|++++|.|+.. ..+..++.|+.|++++|.+.. ...+..+..|
T Consensus 94 ~~~l~~l~l~~n~i~~i~~~l-----~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~--~~~~~~l~~L 164 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKIENLL-----SSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISD--ISGLESLKSL 164 (414)
T ss_pred ccceeeeeccccchhhcccch-----hhhhcchheeccccccccc--cchhhccchhhheeccCcchh--ccCCccchhh
Confidence 445555555555544222211 1345555555555555422 223344445555555555441 1223334455
Q ss_pred CEEEccCCCCccccCccccCCCCCCEEEeecCcCc
Q 038036 189 QEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFS 223 (638)
Q Consensus 189 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~ 223 (638)
+.+++++|.+....+.....+.+++.+.+.+|.+.
T Consensus 165 ~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 165 KLLDLSYNRIVDIENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred hcccCCcchhhhhhhhhhhhccchHHHhccCCchh
Confidence 55555555544322200234445555555555443
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.64 E-value=1.8e-08 Score=73.37 Aligned_cols=61 Identities=34% Similarity=0.550 Sum_probs=54.8
Q ss_pred CCccEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcC
Q 038036 387 QNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSI 447 (638)
Q Consensus 387 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i 447 (638)
++|++|++++|.+....+.+|..+++|++|++++|.++...++.|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4688999999998877778899999999999999999988888999999999999999975
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=1.8e-09 Score=99.85 Aligned_cols=179 Identities=16% Similarity=0.096 Sum_probs=78.7
Q ss_pred ecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcE
Q 038036 87 LETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQT 166 (638)
Q Consensus 87 L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~ 166 (638)
|++|||+...|+......+...|.+|+.|.+.++++.+. +...+..-.+|+.
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~----------------------------I~~~iAkN~~L~~ 238 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDP----------------------------IVNTIAKNSNLVR 238 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcH----------------------------HHHHHhcccccee
Confidence 666777666666444444444455555555555554443 3333333344444
Q ss_pred EEccccccccc--CCccccCCCCCCEEEccCCCCccccCccc-c-CCCCCCEEEeecCcCcc---cCCcccCCCCCCCEE
Q 038036 167 FRAGFNYLSGS--IPDDISAATSLQEISLPGNQLSGAISDGV-G-NLTSLSMLDLQSNKFSG---LIPQDIGKLTNLKSL 239 (638)
Q Consensus 167 L~l~~n~~~~~--~~~~~~~l~~L~~L~L~~n~i~~~~~~~l-~-~l~~L~~L~l~~n~l~~---~~~~~l~~l~~L~~L 239 (638)
|+++.+.--.. ..--+..++.|.+|++++|.+.......+ . --++|+.|++++++-.- .+..-...+++|.+|
T Consensus 239 lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~L 318 (419)
T KOG2120|consen 239 LNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHL 318 (419)
T ss_pred eccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeee
Confidence 44443321101 11123455666666666665442211110 0 01345555555543210 000111244556666
Q ss_pred EccCCC-CCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCC
Q 038036 240 QLHTNS-LSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNN 293 (638)
Q Consensus 240 ~L~~n~-i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n 293 (638)
||++|. ++......+.+++.|++|.++.|.....-....+...|+|.+|++.++
T Consensus 319 DLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 319 DLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred ccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 665542 333333445555666666666554321111112344555555555543
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=8.1e-09 Score=95.65 Aligned_cols=160 Identities=19% Similarity=0.158 Sum_probs=95.0
Q ss_pred CccEEecCCCccccc-ccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCCcCCCCccccccccCCCCCcEE
Q 038036 284 NLHTIDLGNNNFTGS-FPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRML 362 (638)
Q Consensus 284 ~L~~L~l~~n~i~~~-~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L 362 (638)
.++.+|++...++.. ....+..|.+|+.|.+.++++.+.+...+..-.+|+.|+++.+.--+-.+.--.+..|..|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 366666666655432 2223455667777777777776666666666677777777766433222233445667777777
Q ss_pred EcCCCcccccCCcchhhhccccCCCCccEEEeeCCccc---ccchHHhhcCCCCCEEecCCCc-cccCcCccccCCCCCC
Q 038036 363 LLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIK---GQIPTWLARLKKLQVLDLGSNQ-ITGSIPGWLGNMPNLF 438 (638)
Q Consensus 363 ~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~ 438 (638)
++++|............ ..-++|+.|+++++.-. ..+......||+|..|||++|. ++......|..++.|+
T Consensus 266 NlsWc~l~~~~Vtv~V~----hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~ 341 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVA----HISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ 341 (419)
T ss_pred CchHhhccchhhhHHHh----hhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence 77777665544322222 22356777777776321 1223334568888888888773 4433334556677888
Q ss_pred EEEccCCcC
Q 038036 439 YIDLSYNSI 447 (638)
Q Consensus 439 ~L~L~~n~i 447 (638)
+|.++.|..
T Consensus 342 ~lSlsRCY~ 350 (419)
T KOG2120|consen 342 HLSLSRCYD 350 (419)
T ss_pred eeehhhhcC
Confidence 888887764
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.47 E-value=3.6e-09 Score=109.15 Aligned_cols=102 Identities=25% Similarity=0.266 Sum_probs=65.1
Q ss_pred eEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecccCc
Q 038036 502 AIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANND 581 (638)
Q Consensus 502 ~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~ 581 (638)
.|+|++|+++... .+..++.|++|||++|.+. .+|..-..--+|+.|++++|.++.. ..+.++.+|+.||+++|-
T Consensus 191 ~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNl 265 (1096)
T KOG1859|consen 191 SLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTTL--RGIENLKSLYGLDLSYNL 265 (1096)
T ss_pred hhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHhh--hhHHhhhhhhccchhHhh
Confidence 4777777776322 6777888888888888876 4443211112388888888887743 467777888888888887
Q ss_pred eeecCC--CCCcCCCcCCCccCCCCCCCC
Q 038036 582 LQGQIP--SGGQFLTFPSSSFEGNPRFCG 608 (638)
Q Consensus 582 l~~~~p--~~~~~~~l~~~~~~~n~~lc~ 608 (638)
+.+--- .-..+..+..+.++|||..|.
T Consensus 266 l~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 266 LSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred hhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 764221 112233455667788887775
No 46
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.26 E-value=8.5e-08 Score=78.62 Aligned_cols=87 Identities=25% Similarity=0.364 Sum_probs=60.2
Q ss_pred eEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecccCc
Q 038036 502 AIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANND 581 (638)
Q Consensus 502 ~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~ 581 (638)
.+++++|.|. .+|+++..++.|+.|+++.|.+. ..|..+..+.+|-.|+..+|.+. .+|..+-.-+.....++.+++
T Consensus 81 ~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnep 157 (177)
T KOG4579|consen 81 TLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEP 157 (177)
T ss_pred hhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCc
Confidence 3555666665 67777888888888888888887 66777777888888888888876 555443333334445567777
Q ss_pred eeecCCCCCc
Q 038036 582 LQGQIPSGGQ 591 (638)
Q Consensus 582 l~~~~p~~~~ 591 (638)
+.+.-|.++|
T Consensus 158 l~~~~~~klq 167 (177)
T KOG4579|consen 158 LGDETKKKLQ 167 (177)
T ss_pred ccccCccccc
Confidence 7776666544
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.26 E-value=2.5e-07 Score=86.02 Aligned_cols=189 Identities=20% Similarity=0.159 Sum_probs=93.2
Q ss_pred CCCCCEEEccCCCCcc--ccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCC-CcchhhcCCCCCc
Q 038036 185 ATSLQEISLPGNQLSG--AISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSG-FLPQSLMNCTNLI 261 (638)
Q Consensus 185 l~~L~~L~L~~n~i~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~-~~~~~l~~l~~L~ 261 (638)
++.++++||.+|.|+. .+...+.++|.|+.|+++.|.+...+...-....+|+.|.|.+..+.- .....+..+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 4556666666666552 122234566666777776666653322111234567777777666542 2223456667777
Q ss_pred EEEccCccccccc-Ccccc-cCCCCccEEecCCCcccc--cccccCcCCCCCCEEEcCCCccccc-CchhhhcCCCCCEE
Q 038036 262 TLNLRINNFRGDL-SAYNF-STLHNLHTIDLGNNNFTG--SFPLTLTSCKVLTAIRLSRNKIVGQ-ISPEILALESLSYL 336 (638)
Q Consensus 262 ~L~L~~n~l~~~~-~~~~~-~~~~~L~~L~l~~n~i~~--~~~~~l~~~~~L~~L~L~~n~i~~~-~~~~l~~l~~L~~L 336 (638)
.|.++.|.+.... ..... ...+.++++....|.... .....-.-++++..+.+..|.+... ....+..++.+.-|
T Consensus 150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L 229 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL 229 (418)
T ss_pred hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence 7777777433100 00001 112244444444443210 0000111234555666666655432 12334455566666
Q ss_pred EccCCcCCCCccccccccCCCCCcEEEcCCCcccccCC
Q 038036 337 SITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIP 374 (638)
Q Consensus 337 ~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 374 (638)
+++.+++.++. .+..+.+++.|..|.++++.+.+...
T Consensus 230 nL~~~~idswa-svD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 230 NLGANNIDSWA-SVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred hhcccccccHH-HHHHHcCCchhheeeccCCccccccc
Confidence 66666665543 23455666666666666666555443
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=4.1e-07 Score=84.57 Aligned_cols=84 Identities=26% Similarity=0.332 Sum_probs=46.7
Q ss_pred CCCCCEEEccCCCCCC--CcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCcccc-cccccCcCCCCC
Q 038036 233 LTNLKSLQLHTNSLSG--FLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTG-SFPLTLTSCKVL 309 (638)
Q Consensus 233 l~~L~~L~L~~n~i~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~-~~~~~l~~~~~L 309 (638)
.+.++.+||.+|.|++ .+...+.++|.|+.|+++.|++...+.... ....+|+.|-+.+..+.= .....+..+|.+
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp-~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP-LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc-ccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 4567777777777763 223345667777777777777664443211 345566666666654431 122233445555
Q ss_pred CEEEcCCC
Q 038036 310 TAIRLSRN 317 (638)
Q Consensus 310 ~~L~L~~n 317 (638)
++++++.|
T Consensus 149 telHmS~N 156 (418)
T KOG2982|consen 149 TELHMSDN 156 (418)
T ss_pred hhhhhccc
Confidence 56665555
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.24 E-value=3.4e-08 Score=102.19 Aligned_cols=198 Identities=20% Similarity=0.245 Sum_probs=114.2
Q ss_pred CCCcCEEEccCCcCCccC-CccCCCCCCCcEEEcccccccccCCccccCC-CCCCEEEccCCCCc---cccC---cccc-
Q 038036 137 LSSLKILDFSYNDFSGQL-PPGLGNCSKLQTFRAGFNYLSGSIPDDISAA-TSLQEISLPGNQLS---GAIS---DGVG- 207 (638)
Q Consensus 137 l~~L~~L~ls~n~i~~~~-~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~L~~n~i~---~~~~---~~l~- 207 (638)
+.+++.|.+-.-.-.+-. |-.+..+..|++|.+.++.+.. ...+..+ .+|++|.-.+. +. ..+. ..+.
T Consensus 83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~S-l~Al~~v~ascggd~~n 159 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHNS-LDALRHVFASCGGDISN 159 (1096)
T ss_pred HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhcc-HHHHHHHHHHhcccccc
Confidence 445555555443322211 5566678888888888887763 1111111 22333332211 10 0000 0011
Q ss_pred --CCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCc
Q 038036 208 --NLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNL 285 (638)
Q Consensus 208 --~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L 285 (638)
..-.|...+.++|.+. .+..++.-++.++.|+|++|++++. +.+..+++|++|||++|.+. .++......+. |
T Consensus 160 s~~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L 234 (1096)
T KOG1859|consen 160 SPVWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-L 234 (1096)
T ss_pred chhhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-h
Confidence 1234666677777766 3344666677778888888877744 36777788888888888776 45543333444 7
Q ss_pred cEEecCCCcccccccccCcCCCCCCEEEcCCCcccccC-chhhhcCCCCCEEEccCCcCC
Q 038036 286 HTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQI-SPEILALESLSYLSITNNNFS 344 (638)
Q Consensus 286 ~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~-~~~l~~l~~L~~L~L~~n~l~ 344 (638)
..|.+++|.++. -..+.++.+|+.||+++|-+.+.- ...+..+..|..|+|.+|++-
T Consensus 235 ~~L~lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 235 QLLNLRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eeeeecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 778888877762 345677777788888877665431 223445667777777777664
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.18 E-value=1.4e-07 Score=86.39 Aligned_cols=140 Identities=22% Similarity=0.246 Sum_probs=72.7
Q ss_pred hcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCcc----CC---------ccCCCCCCCcEEEccccc
Q 038036 107 QLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQ----LP---------PGLGNCSKLQTFRAGFNY 173 (638)
Q Consensus 107 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~----~~---------~~l~~l~~L~~L~l~~n~ 173 (638)
..|+.|+.++||.|-|....+..+.....+-..|.+|.+++|.+... +. ....+-|.|++.....|+
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR 168 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR 168 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence 34677777777777766555543333333566777777777765311 11 112344667777777776
Q ss_pred ccccCCcc-----ccCCCCCCEEEccCCCCccc-----cCccccCCCCCCEEEeecCcCccc----CCcccCCCCCCCEE
Q 038036 174 LSGSIPDD-----ISAATSLQEISLPGNQLSGA-----ISDGVGNLTSLSMLDLQSNKFSGL----IPQDIGKLTNLKSL 239 (638)
Q Consensus 174 ~~~~~~~~-----~~~l~~L~~L~L~~n~i~~~-----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L 239 (638)
+. ..+.. +..-..|+++.+..|.|... .-..+..+++|+.|+++.|.++.. +...+...+.|+.|
T Consensus 169 le-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 169 LE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred hc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 65 22221 22224566666666665421 011233455666666666655422 11223333445555
Q ss_pred EccCCCCC
Q 038036 240 QLHTNSLS 247 (638)
Q Consensus 240 ~L~~n~i~ 247 (638)
.+..|-++
T Consensus 248 ~lnDClls 255 (388)
T COG5238 248 RLNDCLLS 255 (388)
T ss_pred cccchhhc
Confidence 55555444
No 51
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.13 E-value=5.7e-08 Score=94.42 Aligned_cols=106 Identities=13% Similarity=0.137 Sum_probs=50.6
Q ss_pred CCCCcEEEccCcccccccCc-ccccCCCCccEEecCCCcc-ccc----ccccCcCCCCCCEEEcCCCcc-cccCchhhhc
Q 038036 257 CTNLITLNLRINNFRGDLSA-YNFSTLHNLHTIDLGNNNF-TGS----FPLTLTSCKVLTAIRLSRNKI-VGQISPEILA 329 (638)
Q Consensus 257 l~~L~~L~L~~n~l~~~~~~-~~~~~~~~L~~L~l~~n~i-~~~----~~~~l~~~~~L~~L~L~~n~i-~~~~~~~l~~ 329 (638)
++.|+.+++..+....+... ..-.+++.|+.+.++++.. ++. +...-.....|..+.++++.. ++.....+..
T Consensus 345 ~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~ 424 (483)
T KOG4341|consen 345 CPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSI 424 (483)
T ss_pred ChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhh
Confidence 45555555555443211111 1122455566666655532 111 111223445667777777653 3334455566
Q ss_pred CCCCCEEEccCCcCCCCccccccccCCCCCcEE
Q 038036 330 LESLSYLSITNNNFSNITGAIRILMGCKNLRML 362 (638)
Q Consensus 330 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L 362 (638)
+++|+.+++.++....-.+.-.....+|++++.
T Consensus 425 c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 425 CRNLERIELIDCQDVTKEAISRFATHLPNIKVH 457 (483)
T ss_pred CcccceeeeechhhhhhhhhHHHHhhCccceeh
Confidence 777777777766544333333333445555443
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.05 E-value=3.9e-07 Score=74.81 Aligned_cols=100 Identities=23% Similarity=0.327 Sum_probs=77.7
Q ss_pred eEEccCCcccccCchhh-hcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecccC
Q 038036 502 AIYLRNNSLNGSIPIEI-GNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANN 580 (638)
Q Consensus 502 ~L~ls~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n 580 (638)
..++++|.+. ..|..| ..++..+.|+|++|.+. .+|+.+..++.|+.|+++.|.+. ..|..+..+.+|..|+.-+|
T Consensus 57 ~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 57 KISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred EEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCC
Confidence 3566666666 344444 44568999999999998 78888999999999999999998 77788888999999999999
Q ss_pred ceeecCCCCCcCCCcCCCccCCCCC
Q 038036 581 DLQGQIPSGGQFLTFPSSSFEGNPR 605 (638)
Q Consensus 581 ~l~~~~p~~~~~~~l~~~~~~~n~~ 605 (638)
.+. +||......+.+...--||..
T Consensus 134 a~~-eid~dl~~s~~~al~~lgnep 157 (177)
T KOG4579|consen 134 ARA-EIDVDLFYSSLPALIKLGNEP 157 (177)
T ss_pred ccc-cCcHHHhccccHHHHHhcCCc
Confidence 886 788775566666554335533
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.98 E-value=2e-06 Score=79.09 Aligned_cols=93 Identities=19% Similarity=0.125 Sum_probs=48.5
Q ss_pred cCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchHH----hh--cCCCCCEEecCCCccccCc
Q 038036 354 MGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTW----LA--RLKKLQVLDLGSNQITGSI 427 (638)
Q Consensus 354 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----l~--~l~~L~~L~L~~n~l~~~~ 427 (638)
..+.+|+.|++.+|.++........... ..++.|++|.+.+|-+...-... |. ..|+|..|-..+|.+.+.+
T Consensus 211 ~y~~~LevLDlqDNtft~~gS~~La~al--~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~ 288 (388)
T COG5238 211 FYSHSLEVLDLQDNTFTLEGSRYLADAL--CEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGI 288 (388)
T ss_pred HHhCcceeeeccccchhhhhHHHHHHHh--cccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCce
Confidence 3445555555555554432222111111 13345677777777665432221 11 2577777777777655322
Q ss_pred Ccc-------ccCCCCCCEEEccCCcCc
Q 038036 428 PGW-------LGNMPNLFYIDLSYNSIS 448 (638)
Q Consensus 428 ~~~-------l~~l~~L~~L~L~~n~i~ 448 (638)
-.. =..+|-|..|.+.+|++.
T Consensus 289 i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 289 ILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred eeeechhhhhhcccHHHHHHHHccCcch
Confidence 111 124677888888888876
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.89 E-value=7.3e-06 Score=54.46 Aligned_cols=37 Identities=46% Similarity=0.671 Sum_probs=23.7
Q ss_pred cCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcce
Q 038036 522 KFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLH 559 (638)
Q Consensus 522 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~ 559 (638)
++|++|++++|+|+ .+|..++++++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 35677777777776 45555677777777777777766
No 55
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.80 E-value=1.2e-06 Score=85.57 Aligned_cols=188 Identities=19% Similarity=0.155 Sum_probs=90.6
Q ss_pred CCCCCcEEEccCcc-cccccCcccccCCCCccEEecCCCc-ccc-cccccCcCCCCCCEEEcCCCccccc--CchhhhcC
Q 038036 256 NCTNLITLNLRINN-FRGDLSAYNFSTLHNLHTIDLGNNN-FTG-SFPLTLTSCKVLTAIRLSRNKIVGQ--ISPEILAL 330 (638)
Q Consensus 256 ~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-i~~-~~~~~l~~~~~L~~L~L~~n~i~~~--~~~~l~~l 330 (638)
.|++|++|++..|. ++...-...-..+++|++++++++. +++ .+.....++..++.+.+.+|.-.+. +...-..+
T Consensus 188 ~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~ 267 (483)
T KOG4341|consen 188 YCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYC 267 (483)
T ss_pred hcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccC
Confidence 45666666665532 2211111123456666666666653 222 1222334555566665555532110 01111234
Q ss_pred CCCCEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCccccc-chHHh-h
Q 038036 331 ESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQ-IPTWL-A 408 (638)
Q Consensus 331 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l-~ 408 (638)
..+.++++..|...+..+.+..-.++..|+.+..+++...+..+.+... ...++|+.+.+..|+..+. -...+ .
T Consensus 268 ~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg----~~~~~L~~l~l~~c~~fsd~~ft~l~r 343 (483)
T KOG4341|consen 268 LEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALG----QHCHNLQVLELSGCQQFSDRGFTMLGR 343 (483)
T ss_pred hHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHh----cCCCceEEEeccccchhhhhhhhhhhc
Confidence 4566666666644433334444455667777777665543322222111 2446677777777653221 11112 3
Q ss_pred cCCCCCEEecCCCcccc--CcCccccCCCCCCEEEccCCcC
Q 038036 409 RLKKLQVLDLGSNQITG--SIPGWLGNMPNLFYIDLSYNSI 447 (638)
Q Consensus 409 ~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~i 447 (638)
+++.|+.+++..+.... .+...-.+++.|+.|.+++|..
T Consensus 344 n~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~ 384 (483)
T KOG4341|consen 344 NCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCEL 384 (483)
T ss_pred CChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhh
Confidence 46677777777664431 1222234566777777776653
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.75 E-value=7.3e-05 Score=75.16 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=22.7
Q ss_pred cCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCc
Q 038036 522 KFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENN 557 (638)
Q Consensus 522 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~ 557 (638)
++|++|++++|... ..|+.+. .+|+.|+++.+.
T Consensus 156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred CcccEEEecCCCcc-cCccccc--ccCcEEEecccc
Confidence 56888888888765 4454433 578888887763
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.68 E-value=8.5e-05 Score=65.74 Aligned_cols=83 Identities=23% Similarity=0.253 Sum_probs=34.5
Q ss_pred CCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecC
Q 038036 212 LSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLG 291 (638)
Q Consensus 212 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~ 291 (638)
...+|+++|.+... ..|..++.|.+|.+++|+|+...|.--.-+++|+.|.+.+|.+..-.....+..+|.|++|.+-
T Consensus 44 ~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred cceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 33444444444322 2344444444555555544433333223334445555554444321111123344444444444
Q ss_pred CCccc
Q 038036 292 NNNFT 296 (638)
Q Consensus 292 ~n~i~ 296 (638)
+|.++
T Consensus 122 ~Npv~ 126 (233)
T KOG1644|consen 122 GNPVE 126 (233)
T ss_pred CCchh
Confidence 44443
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.65 E-value=7.6e-05 Score=66.01 Aligned_cols=127 Identities=20% Similarity=0.137 Sum_probs=83.8
Q ss_pred eEEEECCCCCceeeccccCcC-CCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEE
Q 038036 38 VTHLWLPYRGLSGSIYPFIGN-LTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLN 116 (638)
Q Consensus 38 v~~L~l~~~~~~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~ 116 (638)
-+++++.+..+.. ...++. +.....+||+.|.+. .+ ..|..++.|.+|.|.+|+|+ .+...+-..+++|+.|.
T Consensus 21 e~e~~LR~lkip~--ienlg~~~d~~d~iDLtdNdl~-~l--~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~ 94 (233)
T KOG1644|consen 21 ERELDLRGLKIPV--IENLGATLDQFDAIDLTDNDLR-KL--DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLI 94 (233)
T ss_pred ccccccccccccc--hhhccccccccceecccccchh-hc--ccCCCccccceEEecCCcce-eeccchhhhccccceEE
Confidence 4455666554421 111222 356678899988875 23 34678888999999999998 44444566688899999
Q ss_pred cccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccC---CccCCCCCCCcEEEccccc
Q 038036 117 VSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQL---PPGLGNCSKLQTFRAGFNY 173 (638)
Q Consensus 117 Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~---~~~l~~l~~L~~L~l~~n~ 173 (638)
|.+|++... .++-. +..|++|++|.+-+|.++..- .-.+..+|+|+.||+..-.
T Consensus 95 LtnNsi~~l-~dl~p--La~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 95 LTNNSIQEL-GDLDP--LASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ecCcchhhh-hhcch--hccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 999887632 22111 126889999999999886321 1345678999999987654
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.63 E-value=5.9e-05 Score=50.11 Aligned_cols=37 Identities=54% Similarity=0.726 Sum_probs=25.2
Q ss_pred CCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCc
Q 038036 411 KKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSIS 448 (638)
Q Consensus 411 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~ 448 (638)
++|++|++++|+++ .+|..+..+++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 35777777777777 45555777777777777777776
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.55 E-value=0.00038 Score=70.11 Aligned_cols=54 Identities=19% Similarity=0.148 Sum_probs=34.3
Q ss_pred CCCeeeCCCCe-ee-ecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecccCc
Q 038036 523 FLHVLDLSLNN-FS-GEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANND 581 (638)
Q Consensus 523 ~L~~L~Ls~n~-l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~ 581 (638)
+|+.|.+.++. .. ..+|.. -.++|++|++++|... .+|..+. .+|+.|+++.|.
T Consensus 133 sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 133 GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred hHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEecccc
Confidence 56677775433 21 011211 1268999999999977 4555444 589999998763
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.53 E-value=4.6e-05 Score=83.28 Aligned_cols=157 Identities=19% Similarity=0.155 Sum_probs=89.6
Q ss_pred CCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCC-----cccccc---------ccceecEEEcCCcc-cccc
Q 038036 36 ARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPL-----AINSFS---------FVIHLETLDLSYNS-FSGQ 100 (638)
Q Consensus 36 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-----~~~~~~---------~~~~L~~L~Ls~n~-i~~~ 100 (638)
=.++.+++.+..........+.... |+.+.|.+-...... ..+.+. .-.+|++||+++.. +...
T Consensus 60 f~ltki~l~~~~~~~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~ 138 (699)
T KOG3665|consen 60 FNLTKIDLKNVTLQHQTLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNG 138 (699)
T ss_pred heeEEeeccceecchhHHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhcc
Confidence 3677777777665544444344333 777777653221100 000000 12238888887764 3334
Q ss_pred ccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccc-cCC
Q 038036 101 FLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSG-SIP 179 (638)
Q Consensus 101 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~ 179 (638)
.+......+|+|++|.+++-.+.... +.....++++|+.||+|+++++.. ..++++++|+.|.+.+-.+.. ..-
T Consensus 139 W~~kig~~LPsL~sL~i~~~~~~~~d---F~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l 213 (699)
T KOG3665|consen 139 WPKKIGTMLPSLRSLVISGRQFDNDD---FSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDL 213 (699)
T ss_pred HHHHHhhhCcccceEEecCceecchh---HHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhH
Confidence 55556666788888888775553221 112223678888888888877633 566777777777776655542 112
Q ss_pred ccccCCCCCCEEEccCCCC
Q 038036 180 DDISAATSLQEISLPGNQL 198 (638)
Q Consensus 180 ~~~~~l~~L~~L~L~~n~i 198 (638)
..+..+++|+.||+|....
T Consensus 214 ~~LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 214 IDLFNLKKLRVLDISRDKN 232 (699)
T ss_pred HHHhcccCCCeeecccccc
Confidence 2455677777777776543
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.43 E-value=5.7e-05 Score=82.53 Aligned_cols=112 Identities=19% Similarity=0.196 Sum_probs=57.5
Q ss_pred CCCCcEEEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccc-cCchhhhcCCCCCE
Q 038036 257 CTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVG-QISPEILALESLSY 335 (638)
Q Consensus 257 l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~-~~~~~l~~l~~L~~ 335 (638)
+|.|+.|.+.+-.+..+--.....++|+|..||++++.++.. ..+..+++|+.|.+.+-.+.. .....+..+++|+.
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 466666666554443221112345566666666666666532 455566666666666555542 22234556666677
Q ss_pred EEccCCcCCCCcccc----ccccCCCCCcEEEcCCCccc
Q 038036 336 LSITNNNFSNITGAI----RILMGCKNLRMLLLCKKFFH 370 (638)
Q Consensus 336 L~L~~n~l~~~~~~~----~~~~~~~~L~~L~l~~~~~~ 370 (638)
||+|.......+..+ ..-..+|.|+.||.++..+.
T Consensus 225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred eeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 776665544333111 22233555555555544443
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.36 E-value=0.00042 Score=59.25 Aligned_cols=36 Identities=17% Similarity=0.340 Sum_probs=11.2
Q ss_pred CcCCCCCCEEECCCCCCCCCCccccccccceecEEEcC
Q 038036 56 IGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLS 93 (638)
Q Consensus 56 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls 93 (638)
+..+++|+.+.+.. .+. .++...|..+.+|+.+++.
T Consensus 8 F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~ 43 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFP 43 (129)
T ss_dssp TTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEES
T ss_pred HhCCCCCCEEEECC-Cee-EeChhhccccccccccccc
Confidence 33444444444432 222 3344444444344444443
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.30 E-value=0.0011 Score=56.71 Aligned_cols=79 Identities=23% Similarity=0.344 Sum_probs=25.2
Q ss_pred CCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEE
Q 038036 136 SLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSML 215 (638)
Q Consensus 136 ~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L 215 (638)
++.+|+.+.+.. .+......+|..++.|+.+.+..+ +.......|..+++++.+.+.+ .+.......|..+++++.+
T Consensus 10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i 86 (129)
T PF13306_consen 10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI 86 (129)
T ss_dssp T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred CCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccc
Confidence 344444444442 232233334444444444444432 2222222334444444444433 2221222334444444444
Q ss_pred Ee
Q 038036 216 DL 217 (638)
Q Consensus 216 ~l 217 (638)
.+
T Consensus 87 ~~ 88 (129)
T PF13306_consen 87 DI 88 (129)
T ss_dssp EE
T ss_pred cc
Confidence 44
No 65
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.87 E-value=8.3e-05 Score=79.90 Aligned_cols=116 Identities=18% Similarity=0.045 Sum_probs=51.6
Q ss_pred HHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCC-cCCcc----CCccCCCCCCCcEEEccccc-ccccC
Q 038036 105 FFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYN-DFSGQ----LPPGLGNCSKLQTFRAGFNY-LSGSI 178 (638)
Q Consensus 105 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n-~i~~~----~~~~l~~l~~L~~L~l~~n~-~~~~~ 178 (638)
+...+++|+.+.+..+.-..... .......++.|+.|+++++ ..... .......+++|+.|+++.+. +++..
T Consensus 183 l~~~~~~L~~l~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~ 260 (482)
T KOG1947|consen 183 LLSSCPLLKRLSLSGCSKITDDS--LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIG 260 (482)
T ss_pred HHhhCchhhHhhhcccccCChhh--HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchh
Confidence 33345666666665553221100 0011124566666666552 11101 11223345566666666655 33222
Q ss_pred Ccccc-CCCCCCEEEccCCC-CccccC-ccccCCCCCCEEEeecCcC
Q 038036 179 PDDIS-AATSLQEISLPGNQ-LSGAIS-DGVGNLTSLSMLDLQSNKF 222 (638)
Q Consensus 179 ~~~~~-~l~~L~~L~L~~n~-i~~~~~-~~l~~l~~L~~L~l~~n~l 222 (638)
-..+. .+++|++|.+.+|. ++...- .....++.|++|+++++..
T Consensus 261 l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 261 LSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred HHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 22222 25566666655555 332211 2223456666666666543
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.58 E-value=0.0016 Score=60.52 Aligned_cols=86 Identities=30% Similarity=0.358 Sum_probs=42.3
Q ss_pred CCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCC--CCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCcc
Q 038036 209 LTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTN--SLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLH 286 (638)
Q Consensus 209 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n--~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~ 286 (638)
+..|+.+.+.+..++.. ..+..+++|+.|.++.| ++...++.....+++|+++++++|++...-....+..+.+|.
T Consensus 42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred ccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 34444444444444433 24455566666666666 444444434445566666666666654211111233344555
Q ss_pred EEecCCCccc
Q 038036 287 TIDLGNNNFT 296 (638)
Q Consensus 287 ~L~l~~n~i~ 296 (638)
.|++.+|..+
T Consensus 120 ~Ldl~n~~~~ 129 (260)
T KOG2739|consen 120 SLDLFNCSVT 129 (260)
T ss_pred hhhcccCCcc
Confidence 5555555443
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.48 E-value=0.0011 Score=61.49 Aligned_cols=63 Identities=19% Similarity=0.256 Sum_probs=31.4
Q ss_pred CCCCCCcEEEcccccccccCCccccCCCCCCEEEccCC--CCccccCccccCCCCCCEEEeecCcCc
Q 038036 159 GNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGN--QLSGAISDGVGNLTSLSMLDLQSNKFS 223 (638)
Q Consensus 159 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n--~i~~~~~~~l~~l~~L~~L~l~~n~l~ 223 (638)
..+..|+.|.+.+..++. -..+-.+++|++|.++.| .+.+.++-....+++|+++++++|++.
T Consensus 40 d~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred ccccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 344455555555544441 123344566666666666 333333333334456666666666554
No 68
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=96.40 E-value=0.0022 Score=42.42 Aligned_cols=22 Identities=41% Similarity=0.954 Sum_probs=15.6
Q ss_pred CCCCCCCCCC--CCCcCccceEEC
Q 038036 12 SNPPLNWSFS--TDCCFWEGIKCD 33 (638)
Q Consensus 12 ~~~~~~w~~~--~~~~~w~g~~c~ 33 (638)
.+.+.+|+.. .+||+|.||.|+
T Consensus 20 ~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 20 SGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp -CCCTT--TT--S-CCCSTTEEE-
T ss_pred CcccccCCCcCCCCCeeeccEEeC
Confidence 4789999986 799999999995
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.38 E-value=0.00078 Score=72.35 Aligned_cols=63 Identities=19% Similarity=0.153 Sum_probs=27.3
Q ss_pred CCCccEEecCCCc-ccccccccCc-CCCCCCEEEcCCCc-ccccCchh-hhcCCCCCEEEccCCcCC
Q 038036 282 LHNLHTIDLGNNN-FTGSFPLTLT-SCKVLTAIRLSRNK-IVGQISPE-ILALESLSYLSITNNNFS 344 (638)
Q Consensus 282 ~~~L~~L~l~~n~-i~~~~~~~l~-~~~~L~~L~L~~n~-i~~~~~~~-l~~l~~L~~L~L~~n~l~ 344 (638)
+++|+.++++++. +++..-..+. .|++|+.|.+.+|. +++..... ...++.|++|+++++...
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 3445555555444 3322222222 24555555555454 33322222 223455666666555443
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.18 E-value=0.00014 Score=67.57 Aligned_cols=83 Identities=24% Similarity=0.161 Sum_probs=34.2
Q ss_pred CCCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcE
Q 038036 35 KARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLIT 114 (638)
Q Consensus 35 ~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~ 114 (638)
...|+.|++-++++.++ .....++.|++|.||=|+|+. +. .|..+..|+.|.|..|.|.+.---....++++|+.
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIss-L~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISS-LA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeecccccc-ch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 34444444444444321 112344455555555554441 11 13344444444444444442222223334444444
Q ss_pred EEcccCcC
Q 038036 115 LNVSHNMF 122 (638)
Q Consensus 115 L~Ls~n~l 122 (638)
|-|..|.-
T Consensus 93 LWL~ENPC 100 (388)
T KOG2123|consen 93 LWLDENPC 100 (388)
T ss_pred HhhccCCc
Confidence 44444433
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.12 E-value=0.00021 Score=66.37 Aligned_cols=57 Identities=26% Similarity=0.360 Sum_probs=23.7
Q ss_pred CCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCC
Q 038036 187 SLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLS 247 (638)
Q Consensus 187 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~ 247 (638)
+.+.|+..+|.+..+ ....+|+.|++|.|+-|+|+.. ..+..+++|++|+|..|.|.
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~ 76 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE 76 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccc
Confidence 334444444444422 2233444444444444444433 22334444444444444443
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.41 E-value=0.0071 Score=33.24 Aligned_cols=19 Identities=53% Similarity=0.712 Sum_probs=10.2
Q ss_pred CCeeeCCCCeeeecCChhhh
Q 038036 524 LHVLDLSLNNFSGEIPDQIS 543 (638)
Q Consensus 524 L~~L~Ls~n~l~~~~p~~~~ 543 (638)
|++|||++|.++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455566666555 4444444
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.84 E-value=0.0097 Score=32.70 Aligned_cols=19 Identities=63% Similarity=0.704 Sum_probs=10.9
Q ss_pred CCeeeCCCCcceecCCcccc
Q 038036 548 LEGLDLSENNLHGEIPLSII 567 (638)
Q Consensus 548 L~~L~Ls~n~l~~~~p~~l~ 567 (638)
|++|||++|+++ .+|..|.
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 566666666666 4554444
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.95 E-value=0.00037 Score=72.96 Aligned_cols=89 Identities=22% Similarity=0.169 Sum_probs=37.5
Q ss_pred CCEEECCCCCCCCCC---ccccccccceecEEEcCCccccccccHHHHhcCC----CCcEEEcccCcCcccCCCccccCC
Q 038036 62 LCHLNLSHNHLSGPL---AINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAE----NLITLNVSHNMFSGSIPSFTSWNN 134 (638)
Q Consensus 62 L~~L~Ls~n~l~~~~---~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~----~L~~L~Ls~n~l~~~~~~~~~~~~ 134 (638)
+.+|.|.+|.+.+.. -...+...+.|+.|++++|.+.+.....+...++ .+++|.+..|.+++.........+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 555666666555321 1112233444666666666655433332222222 234444444444433332222222
Q ss_pred CCCCCcCEEEccCCcC
Q 038036 135 KSLSSLKILDFSYNDF 150 (638)
Q Consensus 135 ~~l~~L~~L~ls~n~i 150 (638)
.....++.++++.|.+
T Consensus 169 ~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGL 184 (478)
T ss_pred hcccchhHHHHHhccc
Confidence 2344444444444443
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.26 E-value=0.00047 Score=72.19 Aligned_cols=40 Identities=25% Similarity=0.291 Sum_probs=18.1
Q ss_pred CcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCC
Q 038036 112 LITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFS 151 (638)
Q Consensus 112 L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~ 151 (638)
+..|.|.+|.+.......+...++....|..|++++|.+.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~ 128 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG 128 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc
Confidence 4444444444443333333333334455555555555544
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.97 E-value=0.074 Score=27.01 Aligned_cols=13 Identities=46% Similarity=0.539 Sum_probs=4.9
Q ss_pred CCCeeeCCCCeee
Q 038036 523 FLHVLDLSLNNFS 535 (638)
Q Consensus 523 ~L~~L~Ls~n~l~ 535 (638)
+|+.|+|++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3455555555543
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.61 E-value=0.23 Score=28.44 Aligned_cols=21 Identities=43% Similarity=0.618 Sum_probs=12.8
Q ss_pred CCCCEEECCCCCCCCCCccccc
Q 038036 60 THLCHLNLSHNHLSGPLAINSF 81 (638)
Q Consensus 60 ~~L~~L~Ls~n~l~~~~~~~~~ 81 (638)
++|++|+|++|+++ .+|.+.|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666666666665 5555554
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.61 E-value=0.23 Score=28.44 Aligned_cols=21 Identities=43% Similarity=0.618 Sum_probs=12.8
Q ss_pred CCCCEEECCCCCCCCCCccccc
Q 038036 60 THLCHLNLSHNHLSGPLAINSF 81 (638)
Q Consensus 60 ~~L~~L~Ls~n~l~~~~~~~~~ 81 (638)
++|++|+|++|+++ .+|.+.|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666666666665 5555554
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.21 E-value=0.02 Score=52.19 Aligned_cols=79 Identities=20% Similarity=0.148 Sum_probs=65.1
Q ss_pred eEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecccCc
Q 038036 502 AIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANND 581 (638)
Q Consensus 502 ~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~ 581 (638)
.||++.|++. ..-..|+-++.|..||++.|.+. ..|..++++..+..+++..|..+ ..|.++...++++.+++..|+
T Consensus 46 vld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 46 VLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTE 122 (326)
T ss_pred eehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCc
Confidence 5778888775 34445677788888999999987 78888999999999999888887 788888999999999998888
Q ss_pred ee
Q 038036 582 LQ 583 (638)
Q Consensus 582 l~ 583 (638)
+.
T Consensus 123 ~~ 124 (326)
T KOG0473|consen 123 FF 124 (326)
T ss_pred ch
Confidence 65
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.21 E-value=0.14 Score=46.03 Aligned_cols=83 Identities=14% Similarity=0.142 Sum_probs=49.7
Q ss_pred CCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccc-cccceecEEEcCCc-cccccccHHHHhcCCCCc
Q 038036 36 ARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSF-SFVIHLETLDLSYN-SFSGQFLSSFFQLAENLI 113 (638)
Q Consensus 36 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~-~~~~~L~~L~Ls~n-~i~~~~~~~~~~~~~~L~ 113 (638)
-.|+.++-+++.+...-.+-+.+++.++.|.+.+|+-.+.-..+.. ...++|+.|++++| +|++....- ...+++|+
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~-L~~lknLr 179 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLAC-LLKLKNLR 179 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHH-HHHhhhhH
Confidence 3577788888877666666677778888888877754332211111 13455777777766 466444432 33466666
Q ss_pred EEEccc
Q 038036 114 TLNVSH 119 (638)
Q Consensus 114 ~L~Ls~ 119 (638)
.|.+.+
T Consensus 180 ~L~l~~ 185 (221)
T KOG3864|consen 180 RLHLYD 185 (221)
T ss_pred HHHhcC
Confidence 666543
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.96 E-value=0.46 Score=27.14 Aligned_cols=14 Identities=57% Similarity=0.752 Sum_probs=6.5
Q ss_pred CCCCeeeCCCCcce
Q 038036 546 TNLEGLDLSENNLH 559 (638)
Q Consensus 546 ~~L~~L~Ls~n~l~ 559 (638)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34444444444444
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.96 E-value=0.46 Score=27.14 Aligned_cols=14 Identities=57% Similarity=0.752 Sum_probs=6.5
Q ss_pred CCCCeeeCCCCcce
Q 038036 546 TNLEGLDLSENNLH 559 (638)
Q Consensus 546 ~~L~~L~Ls~n~l~ 559 (638)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34444444444444
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=86.70 E-value=0.29 Score=27.38 Aligned_cols=17 Identities=53% Similarity=0.587 Sum_probs=8.9
Q ss_pred CCCCEEEccCCcCcccc
Q 038036 435 PNLFYIDLSYNSISGEF 451 (638)
Q Consensus 435 ~~L~~L~L~~n~i~~~~ 451 (638)
++|++|+|++|+|+...
T Consensus 2 ~~L~~L~l~~n~i~~~g 18 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEG 18 (24)
T ss_dssp TT-SEEE-TSSBEHHHH
T ss_pred CCCCEEEccCCcCCHHH
Confidence 56666666666665433
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.43 E-value=0.31 Score=43.80 Aligned_cols=80 Identities=20% Similarity=0.154 Sum_probs=54.9
Q ss_pred CccEEEeeCCcccccchHHhhcCCCCCEEecCCCccccC-cCcccc-CCCCCCEEEccCCc-Cccccchhhhhhccchhh
Q 038036 388 NLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGS-IPGWLG-NMPNLFYIDLSYNS-ISGEFPKEFCGLRALALQ 464 (638)
Q Consensus 388 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~-~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~l 464 (638)
.++.++-+++.|..+--+.+..++.++.|.+.+|.--+. --+.+. -.++|+.|++++|+ |+..--..+..+++|+.+
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 467788888888877777788888899999988853211 001111 35799999999987 665545566667777766
Q ss_pred hcc
Q 038036 465 EVK 467 (638)
Q Consensus 465 ~~~ 467 (638)
.+.
T Consensus 182 ~l~ 184 (221)
T KOG3864|consen 182 HLY 184 (221)
T ss_pred Hhc
Confidence 553
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=82.79 E-value=0.11 Score=47.61 Aligned_cols=55 Identities=13% Similarity=0.132 Sum_probs=37.4
Q ss_pred EEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcce
Q 038036 503 IYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLH 559 (638)
Q Consensus 503 L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~ 559 (638)
|+++.|.+. ..|..+..+..++.+++-.|... ..|.+++..+.++++++.+|.++
T Consensus 70 l~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 70 LDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred HhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence 455555554 55666666666777777777665 67777777777777777777765
No 86
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=71.46 E-value=2.7 Score=24.50 Aligned_cols=12 Identities=50% Similarity=0.670 Sum_probs=6.0
Q ss_pred ecEEEcCCcccc
Q 038036 87 LETLDLSYNSFS 98 (638)
Q Consensus 87 L~~L~Ls~n~i~ 98 (638)
|++|+|++|.|+
T Consensus 4 L~~LdL~~N~i~ 15 (28)
T smart00368 4 LRELDLSNNKLG 15 (28)
T ss_pred cCEEECCCCCCC
Confidence 445555555544
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=71.38 E-value=3.5 Score=23.65 Aligned_cols=14 Identities=64% Similarity=0.897 Sum_probs=8.4
Q ss_pred CCCCeeeCCCCcce
Q 038036 546 TNLEGLDLSENNLH 559 (638)
Q Consensus 546 ~~L~~L~Ls~n~l~ 559 (638)
++|+.|++++|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45666666666665
No 88
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=70.26 E-value=2.8 Score=23.95 Aligned_cols=13 Identities=31% Similarity=0.388 Sum_probs=6.5
Q ss_pred CCCeeeCCCCeee
Q 038036 523 FLHVLDLSLNNFS 535 (638)
Q Consensus 523 ~L~~L~Ls~n~l~ 535 (638)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 3445555555554
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=70.19 E-value=34 Score=35.48 Aligned_cols=15 Identities=20% Similarity=0.304 Sum_probs=9.1
Q ss_pred CCCCCEEEcCCCccc
Q 038036 306 CKVLTAIRLSRNKIV 320 (638)
Q Consensus 306 ~~~L~~L~L~~n~i~ 320 (638)
-+.+..|++++|...
T Consensus 439 tqtl~kldisgn~mg 453 (553)
T KOG4242|consen 439 TQTLAKLDISGNGMG 453 (553)
T ss_pred CcccccccccCCCcc
Confidence 355666666666554
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=69.69 E-value=17 Score=37.52 Aligned_cols=67 Identities=19% Similarity=0.162 Sum_probs=33.2
Q ss_pred CCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccc---cCCCCCCEEEccCCCCccccCc
Q 038036 136 SLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDI---SAATSLQEISLPGNQLSGAISD 204 (638)
Q Consensus 136 ~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~---~~l~~L~~L~L~~n~i~~~~~~ 204 (638)
..+.+++++++.|.+....|-.+..-.. -+.++.+..+...-..+ ..-..+.+++++.|.....+|.
T Consensus 163 pnpr~r~~dls~npi~dkvpihl~~p~~--pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~ 232 (553)
T KOG4242|consen 163 PNPRARQHDLSPNPIGDKVPIHLPQPGN--PLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPR 232 (553)
T ss_pred CcchhhhhccCCCcccccCCccccCCCC--ccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchh
Confidence 4566778888888777665555532111 14444444432111100 0113466666666665544443
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=67.41 E-value=3.8 Score=42.91 Aligned_cols=69 Identities=14% Similarity=0.097 Sum_probs=31.9
Q ss_pred CCCCCEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCccccc
Q 038036 330 LESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQ 402 (638)
Q Consensus 330 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 402 (638)
.+.+..+.+++|++..+...-......|+|+.|++++|...-....+ +.......|++|-+.+|++...
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~e----l~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESE----LDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhh----hhhhcCCCHHHeeecCCccccc
Confidence 34455555555555554444344444555555555555111100000 0111334566666777766643
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=40.80 E-value=21 Score=37.64 Aligned_cols=66 Identities=21% Similarity=0.178 Sum_probs=41.0
Q ss_pred CCCCccEEEeeCCccccc--chHHhhcCCCCCEEecCCCccccCcCcccc--CCCCCCEEEccCCcCccc
Q 038036 385 AFQNLLVLGIGDCEIKGQ--IPTWLARLKKLQVLDLGSNQITGSIPGWLG--NMPNLFYIDLSYNSISGE 450 (638)
Q Consensus 385 ~~~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~L~~n~i~~~ 450 (638)
.++.+..+.+++|++... +...-...|.|+.|+|++|...-....++. ...-|++|-+.||++...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccc
Confidence 566777777888776532 233334578899999999832211122222 234578888999988644
No 93
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=37.55 E-value=23 Score=19.98 Aligned_cols=13 Identities=46% Similarity=0.462 Sum_probs=11.1
Q ss_pred CCCCCEEEccCCc
Q 038036 434 MPNLFYIDLSYNS 446 (638)
Q Consensus 434 l~~L~~L~L~~n~ 446 (638)
+++|+.|+|++|.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 4789999999986
No 94
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=21.69 E-value=50 Score=42.33 Aligned_cols=34 Identities=32% Similarity=0.354 Sum_probs=29.5
Q ss_pred eCCCCeeeecCChhhhCCCCCCeeeCCCCcceec
Q 038036 528 DLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGE 561 (638)
Q Consensus 528 ~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ 561 (638)
||++|+|+...+..|..+++|+.|+|++|.+...
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CD 34 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECD 34 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccc
Confidence 6899999977778889999999999999998753
Done!