Query 038036
Match_columns 638
No_of_seqs 489 out of 4351
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 11:26:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038036.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038036hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.7E-72 5.9E-77 634.1 46.0 600 8-622 23-753 (768)
2 3rgz_A Protein brassinosteroid 100.0 5.8E-58 2E-62 515.9 36.1 536 58-611 75-721 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 3.5E-54 1.2E-58 481.0 43.7 565 35-610 24-626 (680)
4 3t6q_A CD180 antigen; protein- 100.0 5.2E-53 1.8E-57 465.3 36.1 514 35-608 32-562 (606)
5 3t6q_A CD180 antigen; protein- 100.0 2.1E-52 7.1E-57 460.5 38.6 495 34-587 55-564 (606)
6 3vq2_A TLR4, TOLL-like recepto 100.0 4.6E-52 1.6E-56 457.8 33.3 486 60-610 32-562 (606)
7 1ziw_A TOLL-like receptor 3; i 100.0 7.9E-51 2.7E-55 454.0 41.0 534 35-588 48-627 (680)
8 3vq2_A TLR4, TOLL-like recepto 100.0 3E-51 1E-55 451.3 33.9 491 35-588 31-563 (606)
9 4eco_A Uncharacterized protein 100.0 2.2E-52 7.5E-57 459.8 21.3 484 13-585 55-602 (636)
10 3j0a_A TOLL-like receptor 5; m 100.0 3.1E-50 1E-54 457.7 31.5 521 25-610 14-564 (844)
11 3j0a_A TOLL-like receptor 5; m 100.0 3.3E-49 1.1E-53 449.2 34.6 501 39-605 7-538 (844)
12 4ecn_A Leucine-rich repeat pro 100.0 5.7E-48 1.9E-52 430.9 32.0 469 17-583 285-864 (876)
13 2z63_A TOLL-like receptor 4, v 100.0 1.7E-47 6E-52 418.4 33.7 489 37-588 29-536 (570)
14 2z63_A TOLL-like receptor 4, v 100.0 2.4E-46 8.2E-51 409.3 33.4 469 35-564 51-536 (570)
15 2z81_A CD282 antigen, TOLL-lik 100.0 2.2E-45 7.7E-50 399.6 34.6 485 24-588 3-515 (549)
16 2z81_A CD282 antigen, TOLL-lik 100.0 7.2E-45 2.5E-49 395.6 29.5 464 86-610 27-514 (549)
17 2z7x_B TOLL-like receptor 1, v 100.0 1.1E-44 3.6E-49 391.3 24.3 454 39-587 3-485 (520)
18 2z7x_B TOLL-like receptor 1, v 100.0 4E-44 1.4E-48 386.8 25.0 464 63-609 3-484 (520)
19 4g8a_A TOLL-like receptor 4; l 100.0 1.6E-42 5.5E-47 384.3 35.8 514 36-609 52-583 (635)
20 4eco_A Uncharacterized protein 100.0 3.3E-43 1.1E-47 386.8 27.0 358 196-609 193-603 (636)
21 4ecn_A Leucine-rich repeat pro 100.0 5.6E-43 1.9E-47 390.7 25.7 384 172-607 435-865 (876)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.1E-41 3.6E-46 370.9 22.8 457 37-588 32-515 (562)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 9.5E-41 3.3E-45 363.4 26.5 461 59-609 30-513 (562)
24 3v47_A TOLL-like receptor 5B a 100.0 1.7E-38 5.8E-43 337.0 31.0 383 113-589 13-414 (455)
25 4g8a_A TOLL-like receptor 4; l 100.0 3.2E-38 1.1E-42 349.8 32.6 500 41-605 36-554 (635)
26 3v47_A TOLL-like receptor 5B a 100.0 2.1E-38 7.2E-43 336.3 29.2 384 87-563 12-412 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 4.7E-37 1.6E-41 323.0 25.8 281 35-370 10-290 (454)
28 1jl5_A Outer protein YOPM; leu 100.0 2.2E-36 7.4E-41 317.9 26.0 416 59-607 10-430 (454)
29 1o6v_A Internalin A; bacterial 100.0 1.1E-34 3.8E-39 307.8 33.0 279 109-449 45-323 (466)
30 1o6v_A Internalin A; bacterial 100.0 3.1E-34 1.1E-38 304.4 35.2 300 84-448 45-344 (466)
31 3bz5_A Internalin-J, INLJ; leu 100.0 1.3E-34 4.6E-39 304.6 29.8 355 82-589 39-393 (457)
32 2id5_A Lingo-1, leucine rich r 100.0 6.3E-35 2.2E-39 311.2 26.1 321 165-560 14-334 (477)
33 3bz5_A Internalin-J, INLJ; leu 100.0 8.9E-34 3.1E-38 298.3 29.9 360 53-542 35-394 (457)
34 1ogq_A PGIP-2, polygalacturona 100.0 2.4E-35 8.1E-40 295.4 17.0 276 9-294 18-302 (313)
35 3o6n_A APL1; leucine-rich repe 100.0 6.9E-34 2.4E-38 294.8 26.3 335 161-610 44-378 (390)
36 2id5_A Lingo-1, leucine rich r 100.0 3E-33 1E-37 298.3 30.5 353 140-568 13-365 (477)
37 3o6n_A APL1; leucine-rich repe 100.0 1E-32 3.4E-37 286.1 29.6 350 15-449 3-353 (390)
38 3oja_B Anopheles plasmodium-re 100.0 1.7E-33 5.8E-38 307.8 24.9 335 161-610 50-384 (597)
39 4fmz_A Internalin; leucine ric 100.0 1.2E-31 4.1E-36 273.5 30.9 78 502-583 269-346 (347)
40 3oja_B Anopheles plasmodium-re 100.0 9.2E-32 3.2E-36 294.1 30.3 349 14-450 8-360 (597)
41 4fmz_A Internalin; leucine ric 100.0 4.5E-31 1.5E-35 269.3 32.1 305 136-559 42-346 (347)
42 1ogq_A PGIP-2, polygalacturona 100.0 1.6E-32 5.6E-37 274.8 20.4 256 284-612 51-310 (313)
43 1z7x_W Ribonuclease inhibitor; 100.0 2.7E-33 9.3E-38 297.5 2.4 396 61-457 4-449 (461)
44 1xku_A Decorin; proteoglycan, 100.0 1.2E-29 4.2E-34 256.6 28.0 268 211-581 53-330 (330)
45 2ft3_A Biglycan; proteoglycan, 100.0 5E-30 1.7E-34 259.6 24.3 287 188-581 35-331 (332)
46 1z7x_W Ribonuclease inhibitor; 100.0 1.3E-32 4.4E-37 292.3 4.1 386 138-583 3-440 (461)
47 1xku_A Decorin; proteoglycan, 100.0 1.4E-28 4.9E-33 248.7 27.6 267 39-344 34-306 (330)
48 2ft3_A Biglycan; proteoglycan, 100.0 1.3E-28 4.4E-33 249.2 25.5 244 85-345 33-278 (332)
49 3ogk_B Coronatine-insensitive 100.0 3.7E-32 1.3E-36 298.3 -1.6 260 24-291 41-326 (592)
50 4fcg_A Uncharacterized protein 100.0 4.9E-28 1.7E-32 243.6 17.9 249 15-270 47-313 (328)
51 3ogk_B Coronatine-insensitive 100.0 5.3E-30 1.8E-34 281.1 3.4 408 35-450 72-528 (592)
52 2z80_A TOLL-like receptor 2, v 99.9 2.4E-27 8.1E-32 242.1 18.6 287 17-324 22-318 (353)
53 2z80_A TOLL-like receptor 2, v 99.9 9.4E-27 3.2E-31 237.6 20.1 283 137-452 30-318 (353)
54 2z66_A Variable lymphocyte rec 99.9 3.5E-27 1.2E-31 235.8 15.1 280 25-329 7-296 (306)
55 2p1m_B Transport inhibitor res 99.9 7.8E-30 2.7E-34 280.0 -5.8 458 24-581 34-542 (594)
56 2z66_A Variable lymphocyte rec 99.9 1.4E-26 4.8E-31 231.4 15.1 248 63-321 10-262 (306)
57 3zyi_A Leucine-rich repeat-con 99.9 6E-25 2.1E-29 232.0 25.2 245 62-318 56-301 (452)
58 4fcg_A Uncharacterized protein 99.9 3E-25 1E-29 223.2 21.8 227 110-346 81-316 (328)
59 1ozn_A Reticulon 4 receptor; N 99.9 8.3E-26 2.8E-30 223.3 16.6 225 39-272 14-239 (285)
60 3zyj_A Leucine-rich repeat-con 99.9 5E-25 1.7E-29 231.7 23.4 246 38-295 45-291 (440)
61 1ozn_A Reticulon 4 receptor; N 99.9 2.3E-25 7.9E-30 220.1 19.5 206 138-344 32-238 (285)
62 2o6q_A Variable lymphocyte rec 99.9 6.1E-25 2.1E-29 215.0 20.4 216 22-246 2-217 (270)
63 2p1m_B Transport inhibitor res 99.9 6.1E-28 2.1E-32 264.9 -1.5 420 35-463 65-535 (594)
64 3zyi_A Leucine-rich repeat-con 99.9 1.7E-24 5.9E-29 228.5 24.3 246 87-343 56-302 (452)
65 3zyj_A Leucine-rich repeat-con 99.9 1.5E-24 5.1E-29 228.1 23.7 248 61-344 44-292 (440)
66 3g06_A SSPH2 (leucine-rich rep 99.9 1.4E-24 4.8E-29 234.8 23.9 279 16-345 13-298 (622)
67 3o53_A Protein LRIM1, AGAP0063 99.9 1.4E-26 4.7E-31 232.4 6.5 265 238-588 14-281 (317)
68 1wwl_A Monocyte differentiatio 99.9 4.4E-26 1.5E-30 228.2 7.8 203 137-345 94-310 (312)
69 3g06_A SSPH2 (leucine-rich rep 99.9 4.2E-23 1.4E-27 223.3 30.0 271 110-461 40-310 (622)
70 1wwl_A Monocyte differentiatio 99.9 2.5E-26 8.5E-31 229.9 3.8 252 56-321 39-310 (312)
71 3o53_A Protein LRIM1, AGAP0063 99.9 4.2E-25 1.4E-29 221.5 12.4 238 183-467 31-270 (317)
72 3oja_A Leucine-rich immune mol 99.9 1.6E-24 5.3E-29 230.0 10.2 234 259-578 35-270 (487)
73 3oja_A Leucine-rich immune mol 99.9 1.4E-23 4.9E-28 222.6 15.8 235 186-467 34-270 (487)
74 2z62_A TOLL-like receptor 4, v 99.9 8.7E-23 3E-27 200.6 17.0 211 52-271 22-237 (276)
75 2z62_A TOLL-like receptor 4, v 99.9 3.5E-22 1.2E-26 196.2 20.2 183 136-320 50-237 (276)
76 1p9a_G Platelet glycoprotein I 99.9 4.6E-22 1.6E-26 196.2 18.1 202 328-583 7-208 (290)
77 2o6q_A Variable lymphocyte rec 99.9 2.5E-21 8.6E-26 189.3 23.1 181 139-344 38-218 (270)
78 1p9a_G Platelet glycoprotein I 99.9 1.9E-21 6.6E-26 191.7 21.4 203 56-271 6-208 (290)
79 2ast_B S-phase kinase-associat 99.9 3.6E-24 1.2E-28 217.1 1.1 237 22-268 34-282 (336)
80 3rfs_A Internalin B, repeat mo 99.9 7E-22 2.4E-26 193.4 15.9 161 136-304 83-243 (272)
81 3rfs_A Internalin B, repeat mo 99.9 5.8E-22 2E-26 194.0 14.0 229 84-331 18-246 (272)
82 3goz_A Leucine-rich repeat-con 99.9 1.2E-22 4.1E-27 207.7 6.4 229 40-269 2-264 (362)
83 3m19_A Variable lymphocyte rec 99.9 4.3E-21 1.5E-25 185.5 16.9 192 22-248 2-193 (251)
84 3goz_A Leucine-rich repeat-con 99.9 3.5E-22 1.2E-26 204.2 9.4 256 239-563 3-301 (362)
85 2ast_B S-phase kinase-associat 99.9 1.1E-21 3.8E-26 198.7 11.8 251 236-589 49-312 (336)
86 2ca6_A RAN GTPase-activating p 99.9 2.4E-22 8.1E-27 207.6 6.7 245 278-587 27-320 (386)
87 3m19_A Variable lymphocyte rec 99.8 5.9E-21 2E-25 184.4 14.7 162 387-587 35-196 (251)
88 2ca6_A RAN GTPase-activating p 99.8 2.1E-22 7.1E-27 208.1 3.6 186 159-345 91-317 (386)
89 2xwt_C Thyrotropin receptor; s 99.8 3.6E-20 1.2E-24 177.6 17.3 195 139-340 32-235 (239)
90 4glp_A Monocyte differentiatio 99.8 2E-21 6.7E-26 194.2 8.5 228 86-321 65-308 (310)
91 4glp_A Monocyte differentiatio 99.8 2.4E-20 8.2E-25 186.3 16.1 200 138-344 91-307 (310)
92 2xwt_C Thyrotropin receptor; s 99.8 7.9E-20 2.7E-24 175.2 17.1 205 150-367 23-236 (239)
93 1h6u_A Internalin H; cell adhe 99.8 1.1E-19 3.7E-24 181.0 16.4 191 84-296 40-230 (308)
94 1h6u_A Internalin H; cell adhe 99.8 2E-19 6.8E-24 179.1 17.9 173 159-346 60-232 (308)
95 4ay9_X Follicle-stimulating ho 99.8 1.8E-19 6.2E-24 183.1 16.4 244 25-293 9-256 (350)
96 4ay9_X Follicle-stimulating ho 99.8 1.1E-18 3.6E-23 177.4 18.4 203 141-348 12-219 (350)
97 2o6s_A Variable lymphocyte rec 99.8 7.9E-19 2.7E-23 164.3 14.3 183 25-234 7-189 (208)
98 3cvr_A Invasion plasmid antige 99.8 4.2E-19 1.4E-23 189.7 11.1 207 15-256 33-252 (571)
99 2o6s_A Variable lymphocyte rec 99.8 3.7E-18 1.3E-22 159.8 15.8 161 138-306 28-188 (208)
100 2v70_A SLIT-2, SLIT homolog 2 99.8 1.4E-18 4.9E-23 163.7 9.1 156 390-587 14-170 (220)
101 2v9t_B SLIT homolog 2 protein 99.7 8.7E-18 3E-22 158.3 13.2 153 390-584 14-166 (220)
102 3cvr_A Invasion plasmid antige 99.7 4.8E-17 1.6E-21 173.8 19.1 179 61-273 60-245 (571)
103 3e6j_A Variable lymphocyte rec 99.7 3.4E-17 1.2E-21 155.4 15.2 164 15-199 9-172 (229)
104 2xot_A Amphoterin-induced prot 99.7 1.3E-17 4.4E-22 170.1 12.9 156 389-583 41-202 (361)
105 1h6t_A Internalin B; cell adhe 99.7 4.4E-17 1.5E-21 160.7 16.0 75 503-583 139-213 (291)
106 1h6t_A Internalin B; cell adhe 99.7 7.7E-17 2.6E-21 158.9 16.2 128 158-296 86-213 (291)
107 3e6j_A Variable lymphocyte rec 99.7 3.5E-17 1.2E-21 155.3 13.3 156 389-587 21-176 (229)
108 2v70_A SLIT-2, SLIT homolog 2 99.7 7.2E-17 2.5E-21 152.0 14.5 111 137-247 56-166 (220)
109 4ezg_A Putative uncharacterize 99.7 4.9E-17 1.7E-21 150.5 12.7 153 385-584 42-195 (197)
110 2v9t_B SLIT homolog 2 protein 99.7 2E-16 6.9E-21 148.9 16.8 131 163-294 33-163 (220)
111 2xot_A Amphoterin-induced prot 99.7 1.5E-16 5.3E-21 162.1 15.6 88 160-247 62-149 (361)
112 1m9s_A Internalin B; cell inva 99.7 9.5E-17 3.3E-21 173.5 13.0 190 60-271 21-210 (605)
113 1m9s_A Internalin B; cell inva 99.7 1.7E-16 5.7E-21 171.5 14.4 188 40-249 25-212 (605)
114 4ezg_A Putative uncharacterize 99.7 2.2E-16 7.4E-21 146.2 12.6 64 182-245 84-147 (197)
115 1w8a_A SLIT protein; signaling 99.7 6.7E-17 2.3E-21 148.8 8.5 129 390-560 11-140 (192)
116 1dce_A Protein (RAB geranylger 99.7 8E-19 2.7E-23 188.6 -7.0 122 412-577 442-567 (567)
117 1xeu_A Internalin C; cellular 99.6 8.9E-16 3.1E-20 148.7 11.5 167 60-247 19-185 (263)
118 3sb4_A Hypothetical leucine ri 99.6 2.6E-16 8.8E-21 158.3 7.9 126 386-576 201-327 (329)
119 1w8a_A SLIT protein; signaling 99.6 9.6E-16 3.3E-20 141.0 10.2 155 414-610 11-166 (192)
120 2ell_A Acidic leucine-rich nuc 99.6 1.2E-15 4.1E-20 137.3 9.8 85 502-587 75-163 (168)
121 3sb4_A Hypothetical leucine ri 99.6 1.8E-15 6E-20 152.2 11.9 102 257-363 225-327 (329)
122 1xeu_A Internalin C; cellular 99.6 1.5E-15 5.2E-20 147.1 10.3 123 138-271 19-141 (263)
123 4b8c_D Glucose-repressible alc 99.6 1.8E-16 6.1E-21 175.8 3.7 209 17-244 154-369 (727)
124 2ell_A Acidic leucine-rich nuc 99.6 2.6E-15 9E-20 135.0 10.3 139 385-565 22-165 (168)
125 2je0_A Acidic leucine-rich nuc 99.6 2.3E-15 7.7E-20 132.5 9.0 76 503-578 69-148 (149)
126 4fdw_A Leucine rich hypothetic 99.6 1.3E-13 4.3E-18 141.6 23.0 269 59-368 112-381 (401)
127 4fdw_A Leucine rich hypothetic 99.6 9E-14 3.1E-18 142.7 21.5 246 53-317 129-380 (401)
128 2je0_A Acidic leucine-rich nuc 99.6 4.7E-15 1.6E-19 130.4 9.7 130 385-555 15-149 (149)
129 2wfh_A SLIT homolog 2 protein 99.6 1.6E-14 5.5E-19 132.7 13.6 128 414-584 13-140 (193)
130 1dce_A Protein (RAB geranylger 99.6 6.7E-17 2.3E-21 173.6 -3.7 198 159-363 346-566 (567)
131 4b8c_D Glucose-repressible alc 99.5 1.1E-15 3.8E-20 169.4 3.8 191 85-293 173-369 (727)
132 2o6r_A Variable lymphocyte rec 99.5 2.3E-14 8E-19 130.0 11.6 86 502-587 56-141 (177)
133 2wfh_A SLIT homolog 2 protein 99.5 1.4E-13 4.8E-18 126.4 14.6 127 141-271 13-139 (193)
134 4fs7_A Uncharacterized protein 99.5 9.3E-13 3.2E-17 135.8 20.8 234 182-462 158-391 (394)
135 1a9n_A U2A', U2A'; complex (nu 99.5 4.3E-14 1.5E-18 128.0 8.9 81 502-584 68-154 (176)
136 2o6r_A Variable lymphocyte rec 99.5 4.5E-13 1.6E-17 121.4 14.6 108 163-270 29-136 (177)
137 1ds9_A Outer arm dynein; leuci 99.5 2.5E-15 8.5E-20 139.1 -2.3 135 403-583 40-185 (198)
138 4fs7_A Uncharacterized protein 99.5 5.7E-12 1.9E-16 129.9 22.6 63 515-579 313-375 (394)
139 1a9n_A U2A', U2A'; complex (nu 99.4 2.5E-13 8.6E-18 122.9 9.9 132 385-560 17-154 (176)
140 1ds9_A Outer arm dynein; leuci 99.3 8.3E-15 2.8E-19 135.6 -6.6 138 407-588 14-158 (198)
141 3g39_A Variable lymphocyte rec 99.3 5.6E-12 1.9E-16 113.1 10.5 69 515-583 47-115 (170)
142 4gt6_A Cell surface protein; l 99.3 4.3E-10 1.5E-14 115.8 25.6 322 188-582 66-390 (394)
143 4gt6_A Cell surface protein; l 99.3 2.4E-10 8.1E-15 117.7 23.3 319 52-399 55-390 (394)
144 2r9u_A Variable lymphocyte rec 99.3 9.8E-12 3.4E-16 111.9 10.4 57 503-559 62-118 (174)
145 3g39_A Variable lymphocyte rec 99.3 3.1E-11 1E-15 108.2 12.4 104 141-247 12-115 (170)
146 3un9_A NLR family member X1; l 99.3 8.9E-14 3E-18 141.3 -5.1 188 59-247 71-283 (372)
147 3un9_A NLR family member X1; l 99.2 3.4E-13 1.2E-17 137.0 -1.7 170 84-256 71-261 (372)
148 2r9u_A Variable lymphocyte rec 99.2 5E-11 1.7E-15 107.2 12.3 104 141-247 15-118 (174)
149 2ifg_A High affinity nerve gro 99.1 9.5E-11 3.3E-15 118.6 9.5 106 502-609 12-119 (347)
150 2ifg_A High affinity nerve gro 99.1 3.1E-10 1.1E-14 114.8 9.4 106 414-561 11-118 (347)
151 4h09_A Hypothetical leucine ri 99.0 4.3E-08 1.5E-12 100.3 24.7 284 36-339 46-341 (379)
152 4h09_A Hypothetical leucine ri 98.9 3.5E-07 1.2E-11 93.4 26.2 82 181-267 41-122 (379)
153 2ra8_A Uncharacterized protein 98.8 1.6E-08 5.6E-13 101.6 10.8 64 386-449 192-266 (362)
154 2ra8_A Uncharacterized protein 98.7 1.5E-08 5.1E-13 101.9 6.9 43 403-448 164-206 (362)
155 1io0_A Tropomodulin; LRR prote 98.6 3.6E-08 1.2E-12 89.3 4.9 47 403-449 28-79 (185)
156 1io0_A Tropomodulin; LRR prote 98.5 8E-09 2.7E-13 93.7 -1.9 102 50-151 26-136 (185)
157 3rw6_A Nuclear RNA export fact 98.5 2.8E-09 9.5E-14 101.5 -5.5 146 23-177 76-235 (267)
158 3rw6_A Nuclear RNA export fact 98.2 7.2E-07 2.4E-11 84.8 3.9 84 503-588 148-238 (267)
159 3e4g_A ATP synthase subunit S, 98.0 2.7E-06 9.2E-11 74.8 3.1 34 235-268 115-149 (176)
160 3e4g_A ATP synthase subunit S, 97.9 5.4E-06 1.9E-10 72.9 3.1 83 163-245 62-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.3 4E-05 1.4E-09 68.7 0.6 92 55-146 36-134 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.2 4.6E-05 1.6E-09 68.3 0.0 116 83-198 39-169 (197)
163 3rfe_A Platelet glycoprotein I 96.5 0.0031 1.1E-07 52.6 5.5 56 502-559 12-68 (130)
164 3rfe_A Platelet glycoprotein I 96.4 0.004 1.4E-07 51.9 5.3 57 525-583 11-68 (130)
165 2lz0_A Uncharacterized protein 39.1 42 0.0014 25.7 4.7 47 509-556 7-53 (100)
166 2lz0_A Uncharacterized protein 35.9 1E+02 0.0034 23.5 6.5 35 182-217 16-50 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.7e-72 Score=634.11 Aligned_cols=600 Identities=31% Similarity=0.464 Sum_probs=448.8
Q ss_pred cccCCCCCCCCCCCCCCcCccceEECCCCCeEEEECCCCCceee---cc-----------------------ccCcCCCC
Q 038036 8 NFSASNPPLNWSFSTDCCFWEGIKCDSKARVTHLWLPYRGLSGS---IY-----------------------PFIGNLTH 61 (638)
Q Consensus 8 ~~~~~~~~~~w~~~~~~~~w~g~~c~~~~~v~~L~l~~~~~~~~---~~-----------------------~~l~~l~~ 61 (638)
++.|..++++|..+.+||+|.||.|+ .++|++|+|+++.+.|. ++ +.++.+++
T Consensus 23 ~~~~~~~l~~W~~~~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~ 101 (768)
T 3rgz_A 23 VLPDKNLLPDWSSNKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSAS 101 (768)
T ss_dssp TCSCTTSSTTCCTTSCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTT
T ss_pred hCCCcccccCCCCCCCCcCCcceEEC-CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCC
Confidence 35455589999888999999999998 78999999999888775 33 46777788
Q ss_pred CCEEECCCCCCCCCCcc-ccccccceecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCc---cc------
Q 038036 62 LCHLNLSHNHLSGPLAI-NSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSF---TS------ 131 (638)
Q Consensus 62 L~~L~Ls~n~l~~~~~~-~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~---~~------ 131 (638)
|++|+|++|.+.|.+|. ..+..+++|++|+|++|.+++.+|..++..+++|++|++++|.+++..+.. +.
T Consensus 102 L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~ 181 (768)
T 3rgz_A 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELK 181 (768)
T ss_dssp CCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCC
T ss_pred CCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCC
Confidence 88888888888765554 145566677777777776665555444344555555555555554332211 00
Q ss_pred ------------cCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCc
Q 038036 132 ------------WNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLS 199 (638)
Q Consensus 132 ------------~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~ 199 (638)
.....+++|++|++++|.+.+.+|. +.++++|++|++++|.+.+.+|..+..+++|++|++++|.+.
T Consensus 182 ~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 260 (768)
T 3rgz_A 182 HLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 260 (768)
T ss_dssp EEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCE
T ss_pred EEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCccc
Confidence 0013677788888888887766665 788888888888888887777777888888888888888777
Q ss_pred cccCccccCCCCCCEEEeecCcCcccCCcccCCC-CCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCccc
Q 038036 200 GAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKL-TNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYN 278 (638)
Q Consensus 200 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 278 (638)
+..|.. .+++|++|++++|.+++.+|..+... ++|++|++++|.+++..|..+.++++|+.|++++|.+.+.++...
T Consensus 261 ~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~ 338 (768)
T 3rgz_A 261 GPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDT 338 (768)
T ss_dssp ESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHH
T ss_pred CccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHH
Confidence 655543 66777777777777776667666654 778888888887777777777777888888888777776666555
Q ss_pred ccCCCCccEEecCCCcccccccccCcC---------------------------CCCCCEEEcCCCcccccCchhhhcCC
Q 038036 279 FSTLHNLHTIDLGNNNFTGSFPLTLTS---------------------------CKVLTAIRLSRNKIVGQISPEILALE 331 (638)
Q Consensus 279 ~~~~~~L~~L~l~~n~i~~~~~~~l~~---------------------------~~~L~~L~L~~n~i~~~~~~~l~~l~ 331 (638)
+..+++|++|++++|.+++.+|..+.. +++|++|++++|.+++.+|..+..++
T Consensus 339 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~ 418 (768)
T 3rgz_A 339 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS 418 (768)
T ss_dssp HTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCT
T ss_pred HhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCC
Confidence 677777777777777766555544433 44566666666666666666677777
Q ss_pred CCCEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchHHhhcCC
Q 038036 332 SLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLK 411 (638)
Q Consensus 332 ~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~ 411 (638)
+|+.|++++|.++...+ ..+..+++|+.|++++|.+.+..+.... .+++|++|++++|.+.+.+|..+..++
T Consensus 419 ~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~L~~n~l~~~~p~~~~------~l~~L~~L~L~~N~l~~~~p~~l~~l~ 490 (768)
T 3rgz_A 419 ELVSLHLSFNYLSGTIP--SSLGSLSKLRDLKLWLNMLEGEIPQELM------YVKTLETLILDFNDLTGEIPSGLSNCT 490 (768)
T ss_dssp TCCEEECCSSEEESCCC--GGGGGCTTCCEEECCSSCCCSCCCGGGG------GCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred CCCEEECcCCcccCccc--HHHhcCCCCCEEECCCCcccCcCCHHHc------CCCCceEEEecCCcccCcCCHHHhcCC
Confidence 77777777776663222 3456677788888888777766665443 578899999999999988999999999
Q ss_pred CCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhhccchhhhccccCCCCCCcccccccc--------
Q 038036 412 KLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPK-------- 483 (638)
Q Consensus 412 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~-------- 483 (638)
+|++|++++|++++.+|.++..+++|++|++++|++.+.+|..++.+++|+.+++..+.-....+...+...
T Consensus 491 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~ 570 (768)
T 3rgz_A 491 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFI 570 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTT
T ss_pred CCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcc
Confidence 999999999999999999999999999999999999999999999999999888875532211110000000
Q ss_pred -------------------------------------cchhhhhcccccc----------cCCCCeEEccCCcccccCch
Q 038036 484 -------------------------------------TKIALYNQQYNKL----------FSLPPAIYLRNNSLNGSIPI 516 (638)
Q Consensus 484 -------------------------------------~~l~~~~~~~~~l----------~~~~~~L~ls~n~l~~~~~~ 516 (638)
......++..+.+ ......|++++|+++|.+|.
T Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~ 650 (768)
T 3rgz_A 571 AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK 650 (768)
T ss_dssp CSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCG
T ss_pred ccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCH
Confidence 0000000010100 12345899999999999999
Q ss_pred hhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecccCceeecCCCCCcCCCcC
Q 038036 517 EIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPSGGQFLTFP 596 (638)
Q Consensus 517 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~ 596 (638)
.++++++|+.|+|++|.+++.+|+.|+++++|+.|||++|++++.+|..+..+++|++|++++|+++|.||.++++.+++
T Consensus 651 ~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~ 730 (768)
T 3rgz_A 651 EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFP 730 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSC
T ss_pred HHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCCCCCCCCCCCCCCCCCC
Q 038036 597 SSSFEGNPRFCGDIVERQSSCYFIHP 622 (638)
Q Consensus 597 ~~~~~~n~~lc~~~~~~~~~c~~~~~ 622 (638)
..+|.|||++||+++. .|...+.
T Consensus 731 ~~~~~gN~~Lcg~~l~---~C~~~~~ 753 (768)
T 3rgz_A 731 PAKFLNNPGLCGYPLP---RCDPSNA 753 (768)
T ss_dssp GGGGCSCTEEESTTSC---CCCSCC-
T ss_pred HHHhcCCchhcCCCCc---CCCCCcc
Confidence 9999999999999874 6866544
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.8e-58 Score=515.91 Aligned_cols=536 Identities=28% Similarity=0.403 Sum_probs=381.8
Q ss_pred CCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccH-HHHhcCCCCcEEEcccCcCcccCCCccccCCCC
Q 038036 58 NLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLS-SFFQLAENLITLNVSHNMFSGSIPSFTSWNNKS 136 (638)
Q Consensus 58 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 136 (638)
++++|+.++++.+.+. .++ ..|..+++|++|+|++|.+++.+|. ..+..+++|++|++++|.+.+..+... +.+
T Consensus 75 ~L~~L~~l~~~~~~~~-~l~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~---~~~ 149 (768)
T 3rgz_A 75 SLTGLESLFLSNSHIN-GSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSG---GLK 149 (768)
T ss_dssp TCTTCCEEECTTSCEE-ECC-CCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCS---CCC
T ss_pred ccCcccccCCcCCCcC-CCc-hhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHH---hcc
Confidence 3567777777777654 233 3577899999999999999987776 135679999999999999987766533 127
Q ss_pred CCCcCEEEccCCcCCccCCcc---CCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCC
Q 038036 137 LSSLKILDFSYNDFSGQLPPG---LGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLS 213 (638)
Q Consensus 137 l~~L~~L~ls~n~i~~~~~~~---l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~ 213 (638)
+++|++|++++|.+++..+.. +.++++|++|++++|.+.+..+. ..+++|++|++++|.+.+..|. +..+++|+
T Consensus 150 l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~ 226 (768)
T 3rgz_A 150 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQ 226 (768)
T ss_dssp CTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCC
T ss_pred CCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCC
Confidence 899999999999998777666 77888888888888888765443 6778888888888888766665 77888888
Q ss_pred EEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCC
Q 038036 214 MLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNN 293 (638)
Q Consensus 214 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n 293 (638)
+|++++|.+++..|..+..+++|++|++++|.+++..|.. .+++|++|++++|.+.+.++......+++|++|++++|
T Consensus 227 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n 304 (768)
T 3rgz_A 227 HLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN 304 (768)
T ss_dssp EEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSS
T ss_pred EEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCC
Confidence 8888888887777777888888888888888777655543 67777777777777776666533334477777777777
Q ss_pred cccccccccCcCCCCCCEEEcCCCcccccCchh-hhcCCCCCEEEccCCcCC-CCcccccc-------------------
Q 038036 294 NFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPE-ILALESLSYLSITNNNFS-NITGAIRI------------------- 352 (638)
Q Consensus 294 ~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~-l~~l~~L~~L~L~~n~l~-~~~~~~~~------------------- 352 (638)
.+++.+|..+..+++|++|++++|.+.+.+|.. +..+++|+.|++++|.+. .++..+..
T Consensus 305 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~ 384 (768)
T 3rgz_A 305 HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 384 (768)
T ss_dssp EEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEEC
T ss_pred cCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCc
Confidence 777777777777777777777777776666554 667777777777777665 23322111
Q ss_pred ---ccC--CCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCc
Q 038036 353 ---LMG--CKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSI 427 (638)
Q Consensus 353 ---~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 427 (638)
+.. +++|+.|++++|.+.+..+.... .+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+
T Consensus 385 ~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~------~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 458 (768)
T 3rgz_A 385 LPNLCQNPKNTLQELYLQNNGFTGKIPPTLS------NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 458 (768)
T ss_dssp CTTTTCSTTCCCCEEECCSSEEEEECCGGGG------GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred ChhhhhcccCCccEEECCCCccccccCHHHh------cCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcC
Confidence 111 34455555555555544443322 4566667777777666666666666666777777666666666
Q ss_pred CccccCCCCCCEEEccCCcCccccchhhhhhccchhhhccccCCCCCCcccccccccchhhhhccccccc----------
Q 038036 428 PGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLF---------- 497 (638)
Q Consensus 428 ~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~---------- 497 (638)
|..+..+++|++|++++|.+.+.+|..+.++++|+.+++..+.-....+ ..+....+++.++++.+.+.
T Consensus 459 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 537 (768)
T 3rgz_A 459 PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP-KWIGRLENLAILKLSNNSFSGNIPAELGDC 537 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC-GGGGGCTTCCEEECCSSCCEEECCGGGGGC
T ss_pred CHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCC-hHHhcCCCCCEEECCCCcccCcCCHHHcCC
Confidence 6666666677777777776666666666666666666666554321111 11222334555555555443
Q ss_pred CCCCeEEccCCcccccCchh------------------------------------------------------------
Q 038036 498 SLPPAIYLRNNSLNGSIPIE------------------------------------------------------------ 517 (638)
Q Consensus 498 ~~~~~L~ls~n~l~~~~~~~------------------------------------------------------------ 517 (638)
.-.+.|++++|.++|.+|..
T Consensus 538 ~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 617 (768)
T 3rgz_A 538 RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 617 (768)
T ss_dssp TTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTS
T ss_pred CCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccccc
Confidence 12246777777776655543
Q ss_pred ----------hhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecccCceeecCC
Q 038036 518 ----------IGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIP 587 (638)
Q Consensus 518 ----------l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p 587 (638)
+..+++|+.|||++|++++.+|..++.++.|+.|+|++|++++.+|..+..+++|+.|||++|+++|.+|
T Consensus 618 ~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip 697 (768)
T 3rgz_A 618 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 697 (768)
T ss_dssp CEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCC
T ss_pred ceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCC
Confidence 3446789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CcCCCcCCCccCCCCCCCCCCC
Q 038036 588 SG-GQFLTFPSSSFEGNPRFCGDIV 611 (638)
Q Consensus 588 ~~-~~~~~l~~~~~~~n~~lc~~~~ 611 (638)
.. ..+.++..+++++|+ +.|.++
T Consensus 698 ~~l~~l~~L~~L~ls~N~-l~g~iP 721 (768)
T 3rgz_A 698 QAMSALTMLTEIDLSNNN-LSGPIP 721 (768)
T ss_dssp GGGGGCCCCSEEECCSSE-EEEECC
T ss_pred hHHhCCCCCCEEECcCCc-ccccCC
Confidence 76 457788899999994 455554
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.5e-54 Score=481.03 Aligned_cols=565 Identities=21% Similarity=0.214 Sum_probs=355.5
Q ss_pred CCCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcE
Q 038036 35 KARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLIT 114 (638)
Q Consensus 35 ~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~ 114 (638)
..++++|++++|.+++..+.+++++++|++|++++|.++ .++...|..+++|++|+|++|.++ .+|...+..+++|++
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~ 101 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS-KLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTE 101 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCC-CCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSE
T ss_pred CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccC-ccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCE
Confidence 468999999999998877778999999999999999998 466677888999999999999998 566656677999999
Q ss_pred EEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCcccc--CCCCCCEEE
Q 038036 115 LNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDIS--AATSLQEIS 192 (638)
Q Consensus 115 L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~ 192 (638)
|++++|.+.+..+..+. ++++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+. .+++|++|+
T Consensus 102 L~L~~n~l~~~~~~~~~----~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 177 (680)
T 1ziw_A 102 LHLMSNSIQKIKNNPFV----KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE 177 (680)
T ss_dssp EECCSSCCCCCCSCTTT----TCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEE
T ss_pred EECCCCccCccChhHcc----ccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEE
Confidence 99999999876655444 799999999999999988888899999999999999999866665553 568899999
Q ss_pred ccCCCCccccCccccCCCCCCEEEeecCcCcccCCccc---CCCCCCCEEEccCCCCCCCcchhhcCCCC--CcEEEccC
Q 038036 193 LPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDI---GKLTNLKSLQLHTNSLSGFLPQSLMNCTN--LITLNLRI 267 (638)
Q Consensus 193 L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l---~~l~~L~~L~L~~n~i~~~~~~~l~~l~~--L~~L~L~~ 267 (638)
+++|.+.+..+..+..+.+|+.|++.++.+.......+ ...++|++|++++|.+.+..+..+.+++. |+.|++++
T Consensus 178 L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~ 257 (680)
T 1ziw_A 178 LSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSY 257 (680)
T ss_dssp CTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTT
T ss_pred CCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCC
Confidence 99999988877777776665555555444332111000 01244555555555555444444444432 55555555
Q ss_pred cccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCccccc-----Cc----hhhhcCCCCCEEEc
Q 038036 268 NNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQ-----IS----PEILALESLSYLSI 338 (638)
Q Consensus 268 n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~-----~~----~~l~~l~~L~~L~L 338 (638)
|.+.+ ++...+..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+. +| ..+..+++|+.|++
T Consensus 258 n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l 336 (680)
T 1ziw_A 258 NNLNV-VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNM 336 (680)
T ss_dssp SCCCE-ECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEEC
T ss_pred CCcCc-cCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEEC
Confidence 55442 2222444555555555555555544444555555555555554432210 11 13444455555555
Q ss_pred cCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchHHhhcCCCCCEEec
Q 038036 339 TNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDL 418 (638)
Q Consensus 339 ~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L 418 (638)
++|.+..++. ..+.++++|++|++++|.+........ .......++|+.|++++|.+.+..+..+..+++|+.|++
T Consensus 337 ~~n~l~~~~~--~~~~~l~~L~~L~Ls~n~~~~~~l~~~--~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 412 (680)
T 1ziw_A 337 EDNDIPGIKS--NMFTGLINLKYLSLSNSFTSLRTLTNE--TFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDL 412 (680)
T ss_dssp CSCCBCCCCT--TTTTTCTTCCEEECTTCBSCCCEECTT--TTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCccCCCCh--hHhccccCCcEEECCCCchhhhhcchh--hhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeC
Confidence 5555444322 223444555555555443221100000 000001134445555555444444444444455555555
Q ss_pred CCCccccCcC-ccccCCCCCCEEEccCCcCccccchhhhhhccchhhhccccCCCCCCccc-ccccccchhhhhcccccc
Q 038036 419 GSNQITGSIP-GWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLP-LFVPKTKIALYNQQYNKL 496 (638)
Q Consensus 419 ~~n~l~~~~~-~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~l 496 (638)
++|.+.+.++ ..+..+++|++|++++|++.+..+..|..+++|+.+++..+........| .+....+++.++++++.+
T Consensus 413 ~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l 492 (680)
T 1ziw_A 413 GLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNI 492 (680)
T ss_dssp CSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCC
T ss_pred CCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCC
Confidence 5554443322 34444445555555555444444444444444444444333221111111 112222333334433333
Q ss_pred cC----------CCCeEEccCCcccccCc--------hhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcc
Q 038036 497 FS----------LPPAIYLRNNSLNGSIP--------IEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNL 558 (638)
Q Consensus 497 ~~----------~~~~L~ls~n~l~~~~~--------~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l 558 (638)
.. -.+.|++++|.+++..+ ..+.++++|++|+|++|.++...+..|..+++|+.|++++|++
T Consensus 493 ~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l 572 (680)
T 1ziw_A 493 ANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNL 572 (680)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCC
Confidence 22 12479999999986422 2378899999999999999955556799999999999999999
Q ss_pred eecCCccccccCCCCeEecccCceeecCCCCC--cCCCcCCCccCCCCCCCCCC
Q 038036 559 HGEIPLSIIDLHFLSSFSVANNDLQGQIPSGG--QFLTFPSSSFEGNPRFCGDI 610 (638)
Q Consensus 559 ~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~--~~~~l~~~~~~~n~~lc~~~ 610 (638)
++..+..|..+++|+.|++++|++++..|... .+.++..+.++|||+.|+..
T Consensus 573 ~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 573 NTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred CcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 97777778999999999999999997666432 46788899999999999865
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.2e-53 Score=465.27 Aligned_cols=514 Identities=19% Similarity=0.172 Sum_probs=300.1
Q ss_pred CCCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcE
Q 038036 35 KARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLIT 114 (638)
Q Consensus 35 ~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~ 114 (638)
...+++|++++|.+++..+.+++++++|++|++++|.+. .+....|..+++|++|+|++|.+++..|. .+..+++|++
T Consensus 32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~ 109 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVLTANPLIFMAET-ALSGPKALKH 109 (606)
T ss_dssp CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCSEECTT-TTSSCTTCCE
T ss_pred CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccc-eeChhhccCccccCeeeCCCCcccccChh-hhcccccccE
Confidence 357888888888888877888888888888888888887 46666778888888888888888854444 4566888888
Q ss_pred EEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCC--EEE
Q 038036 115 LNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQ--EIS 192 (638)
Q Consensus 115 L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~--~L~ 192 (638)
|++++|.+++..+..+. ++++|++|++++|.+.+.....+..+++|++|++++|.+.+..+..+..+++|+ +|+
T Consensus 110 L~L~~n~i~~l~~~~~~----~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~ 185 (606)
T 3t6q_A 110 LFFIQTGISSIDFIPLH----NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLN 185 (606)
T ss_dssp EECTTSCCSCGGGSCCT----TCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEE
T ss_pred eeccccCcccCCcchhc----cCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEe
Confidence 88888888765444333 788888888888888864434445588888888888888877777788888888 888
Q ss_pred ccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCC-----CCCcchhhcCCC--CCcEEEc
Q 038036 193 LPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSL-----SGFLPQSLMNCT--NLITLNL 265 (638)
Q Consensus 193 L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i-----~~~~~~~l~~l~--~L~~L~L 265 (638)
+++|.+.+..+..+.. ..|++|++++|... +..+..+.++....+....+ ....+..+..+. +|+.|++
T Consensus 186 l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~~---~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l 261 (606)
T 3t6q_A 186 LNGNDIAGIEPGAFDS-AVFQSLNFGGTQNL---LVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINL 261 (606)
T ss_dssp CTTCCCCEECTTTTTT-CEEEEEECTTCSCH---HHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEEC
T ss_pred cCCCccCccChhHhhh-ccccccccCCchhH---HHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEe
Confidence 8888888766665544 57888888877521 11222222222111111100 011112222221 4555555
Q ss_pred cCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCCcCC-
Q 038036 266 RINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFS- 344 (638)
Q Consensus 266 ~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~- 344 (638)
++|.+. .++...+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 262 ~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 339 (606)
T 3t6q_A 262 QKHYFF-NISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL 339 (606)
T ss_dssp TTCCCS-SCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCC
T ss_pred ecCccC-ccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCccc
Confidence 555554 233334555555555555555555 44555555555555555555555444555555555555555555544
Q ss_pred CCccccccccCCCCCcEEEcCCCcccccC--CcchhhhccccCCCCccEEEeeCCcccccchHHhhcCCCCCEEecCCCc
Q 038036 345 NITGAIRILMGCKNLRMLLLCKKFFHEAI--PDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQ 422 (638)
Q Consensus 345 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~ 422 (638)
.++. ..+..+++|+.|++++|.+.... +.. ...+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 340 ~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 411 (606)
T 3t6q_A 340 ELGT--GCLENLENLRELDLSHDDIETSDCCNLQ------LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411 (606)
T ss_dssp BCCS--STTTTCTTCCEEECCSSCCCEEEESTTT------TTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC
T ss_pred ccch--hhhhccCcCCEEECCCCccccccCcchh------cccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCc
Confidence 1111 12445555555555555554332 111 1244556666666665555555555556666666666665
Q ss_pred cccCcCc-cccCCCCCCEEEccCCcCccccchhhhhhccchhhhccccCCCCCCcccccccccchhhhhcccccccCCCC
Q 038036 423 ITGSIPG-WLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPP 501 (638)
Q Consensus 423 l~~~~~~-~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~ 501 (638)
+.+..+. .+..+++|++|++++|.+.+..|..+..+++|+
T Consensus 412 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~--------------------------------------- 452 (606)
T 3t6q_A 412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQ--------------------------------------- 452 (606)
T ss_dssp EECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCC---------------------------------------
T ss_pred CCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCC---------------------------------------
Confidence 5544332 355556666666666665555555555555554
Q ss_pred eEEccCCccccc---CchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecc
Q 038036 502 AIYLRNNSLNGS---IPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVA 578 (638)
Q Consensus 502 ~L~ls~n~l~~~---~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~ 578 (638)
.|++++|.+++. .+..+..+++|++|+|++|.+++..|..|..+++|+.|++++|++++..|..+..++.| .|+++
T Consensus 453 ~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~ 531 (606)
T 3t6q_A 453 HLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLA 531 (606)
T ss_dssp EEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECC
T ss_pred EEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECc
Confidence 344555554431 12334555555555555555554445555555555555555555555555555555555 55555
Q ss_pred cCceeecCCCC-CcCCCcCCCccCCCCCCCC
Q 038036 579 NNDLQGQIPSG-GQFLTFPSSSFEGNPRFCG 608 (638)
Q Consensus 579 ~n~l~~~~p~~-~~~~~l~~~~~~~n~~lc~ 608 (638)
+|++++..|.. ..+.++..+.++|||+.|.
T Consensus 532 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 562 (606)
T 3t6q_A 532 SNHISIILPSLLPILSQQRTINLRQNPLDCT 562 (606)
T ss_dssp SSCCCCCCGGGHHHHHTSSEEECTTCCEECS
T ss_pred CCcccccCHhhcccCCCCCEEeCCCCCcccc
Confidence 55555433332 2234444555555555553
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.1e-52 Score=460.48 Aligned_cols=495 Identities=18% Similarity=0.175 Sum_probs=407.6
Q ss_pred CCCCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCc
Q 038036 34 SKARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLI 113 (638)
Q Consensus 34 ~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~ 113 (638)
...++++|++++|.+.+..|.+|+++++|++|++++|.++ .++...|..+++|++|++++|.+++..+. .+..+++|+
T Consensus 55 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~l~~~-~~~~l~~L~ 132 (606)
T 3t6q_A 55 RLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI-FMAETALSGPKALKHLFFIQTGISSIDFI-PLHNQKTLE 132 (606)
T ss_dssp TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCS-EECTTTTSSCTTCCEEECTTSCCSCGGGS-CCTTCTTCC
T ss_pred cCccceEEECCCCccceeChhhccCccccCeeeCCCCccc-ccChhhhcccccccEeeccccCcccCCcc-hhccCCccc
Confidence 3568999999999999988999999999999999999998 56566788999999999999999853333 456799999
Q ss_pred EEEcccCcCcccC-CCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCc--EEEcccccccccCCccccCCCCCCE
Q 038036 114 TLNVSHNMFSGSI-PSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQ--TFRAGFNYLSGSIPDDISAATSLQE 190 (638)
Q Consensus 114 ~L~Ls~n~l~~~~-~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~--~L~l~~n~~~~~~~~~~~~l~~L~~ 190 (638)
+|++++|++.+.. +... .+++|++|++++|.+++..+..+..+++|+ +|++++|.+.+..|..+ ...+|++
T Consensus 133 ~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~-~~~~L~~ 206 (606)
T 3t6q_A 133 SLYLGSNHISSIKLPKGF-----PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF-DSAVFQS 206 (606)
T ss_dssp EEECCSSCCCCCCCCTTC-----CCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTT-TTCEEEE
T ss_pred EEECCCCcccccCccccc-----CCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHh-hhccccc
Confidence 9999999998743 4433 489999999999999987788899999999 99999999997666655 4478999
Q ss_pred EEccCCCCccccCccccCCCCCCEEEeecCcCc-----ccCCcccCCCC--CCCEEEccCCCCCCCcchhhcCCCCCcEE
Q 038036 191 ISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFS-----GLIPQDIGKLT--NLKSLQLHTNSLSGFLPQSLMNCTNLITL 263 (638)
Q Consensus 191 L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~-----~~~~~~l~~l~--~L~~L~L~~n~i~~~~~~~l~~l~~L~~L 263 (638)
|++++|.. .+..+..+..++...+....+. ...+..+..+. +|+.|++++|.+++..+..+..+++|+.|
T Consensus 207 L~l~~~~~---~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 283 (606)
T 3t6q_A 207 LNFGGTQN---LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQEL 283 (606)
T ss_dssp EECTTCSC---HHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEE
T ss_pred cccCCchh---HHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEE
Confidence 99999862 3344444544444443332222 11122333332 68889999999987777778889999999
Q ss_pred EccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCch-hhhcCCCCCEEEccCCc
Q 038036 264 NLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISP-EILALESLSYLSITNNN 342 (638)
Q Consensus 264 ~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~-~l~~l~~L~~L~L~~n~ 342 (638)
++++|.+. .++. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.++. .+..+++|+.|++++|.
T Consensus 284 ~l~~n~l~-~lp~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 361 (606)
T 3t6q_A 284 DLTATHLS-ELPS-GLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD 361 (606)
T ss_dssp ECTTSCCS-CCCS-SCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC
T ss_pred eccCCccC-CCCh-hhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCc
Confidence 99999887 5654 578888999999999998877788888899999999999988755544 47888999999999998
Q ss_pred CCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchH-HhhcCCCCCEEecCCC
Q 038036 343 FSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPT-WLARLKKLQVLDLGSN 421 (638)
Q Consensus 343 l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~L~~n 421 (638)
+..+......+..+++|+.|++++|.+....+.... .+++|++|++++|.+.+..+. .+..+++|++|++++|
T Consensus 362 l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~------~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 435 (606)
T 3t6q_A 362 IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK------ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS 435 (606)
T ss_dssp CCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTT------TCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTC
T ss_pred cccccCcchhcccCCCCCEEECCCCcCCcCCHHHhc------CCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCC
Confidence 886653345677889999999999988766554432 578999999999999876554 4889999999999999
Q ss_pred ccccCcCccccCCCCCCEEEccCCcCccc---cchhhhhhccchhhhccccCCCCCCcccccccccchhhhhcccccccC
Q 038036 422 QITGSIPGWLGNMPNLFYIDLSYNSISGE---FPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFS 498 (638)
Q Consensus 422 ~l~~~~~~~l~~l~~L~~L~L~~n~i~~~---~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~ 498 (638)
.+.+..+..+..+++|++|++++|++.+. .+..+..+++|+
T Consensus 436 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~------------------------------------ 479 (606)
T 3t6q_A 436 LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLE------------------------------------ 479 (606)
T ss_dssp CCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCC------------------------------------
T ss_pred ccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCcc------------------------------------
Confidence 99988889999999999999999999763 235567777666
Q ss_pred CCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecc
Q 038036 499 LPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVA 578 (638)
Q Consensus 499 ~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~ 578 (638)
.|++++|.+++..|..+.++++|++|+|++|++++..|+.+..++.| .|++++|++++..|..+..+++|+.|+++
T Consensus 480 ---~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 555 (606)
T 3t6q_A 480 ---ILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLR 555 (606)
T ss_dssp ---EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECT
T ss_pred ---EEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCC
Confidence 79999999998889999999999999999999999999999999999 99999999998888899999999999999
Q ss_pred cCceeecCC
Q 038036 579 NNDLQGQIP 587 (638)
Q Consensus 579 ~n~l~~~~p 587 (638)
+|++.+..+
T Consensus 556 ~N~~~c~c~ 564 (606)
T 3t6q_A 556 QNPLDCTCS 564 (606)
T ss_dssp TCCEECSGG
T ss_pred CCCccccCC
Confidence 999997665
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.6e-52 Score=457.75 Aligned_cols=486 Identities=21% Similarity=0.205 Sum_probs=283.0
Q ss_pred CCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCC
Q 038036 60 THLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSS 139 (638)
Q Consensus 60 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~ 139 (638)
+++++|++++|.++ .++...|.++++|++|++++|.+++..| ..+..+++|++|++++|++.+..|..+. ++++
T Consensus 32 ~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~i~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~----~l~~ 105 (606)
T 3vq2_A 32 SSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIED-KAWHGLHHLSNLILTGNPIQSFSPGSFS----GLTS 105 (606)
T ss_dssp TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCCCCCCTTSST----TCTT
T ss_pred CCcCEEECCCCCcC-EeChhhccCCccCcEEeCCCCcccccCH-HHhhchhhcCEeECCCCcccccChhhcC----Cccc
Confidence 45555555555554 3444444455555555555555542222 2233455555555555555444343332 4555
Q ss_pred cCEEEccCCcCCccCCccCCCCCCCcEEEcccccccc-cCCccccCCCCCCEEEccCCCCccccCccccCCCCCC----E
Q 038036 140 LKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSG-SIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLS----M 214 (638)
Q Consensus 140 L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~----~ 214 (638)
|++|++++|.+++..+..++++++|++|++++|.+.+ .+|..+.++++|++|++++|.+++..+..++.+.+|+ +
T Consensus 106 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~ 185 (606)
T 3vq2_A 106 LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS 185 (606)
T ss_dssp CCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCE
T ss_pred CCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccce
Confidence 5555555555554444445555555555555555543 2355555555555555555555544444444443332 4
Q ss_pred EEeecCcCcccCCcccCCCCCCCEEEccCCCCC-CCcchhhcCCCCCcEEEc----------------------------
Q 038036 215 LDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLS-GFLPQSLMNCTNLITLNL---------------------------- 265 (638)
Q Consensus 215 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~-~~~~~~l~~l~~L~~L~L---------------------------- 265 (638)
|++++|.+++..+..+... +|++|++++|.+. +..|..+.+++.|+.+++
T Consensus 186 L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~ 264 (606)
T 3vq2_A 186 LDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTID 264 (606)
T ss_dssp EECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEE
T ss_pred eeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHh
Confidence 5555555554433333322 4555555555443 233444444555544444
Q ss_pred -----cCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccC
Q 038036 266 -----RINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITN 340 (638)
Q Consensus 266 -----~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~ 340 (638)
..+.+.+.++. +..+++|+.|++++|.+. .++ .+..+++|++|++++|.+ +.+| .+ .+++|+.|++++
T Consensus 265 ~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~ 337 (606)
T 3vq2_A 265 EFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTM 337 (606)
T ss_dssp EEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEES
T ss_pred heeccccccccccccc--cccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccC
Confidence 33333333332 455566666666666654 333 555556666666666666 3444 23 556666666666
Q ss_pred CcCCCCccccccccCCCCCcEEEcCCCcccccC--CcchhhhccccCCCCccEEEeeCCcccccchHHhhcCCCCCEEec
Q 038036 341 NNFSNITGAIRILMGCKNLRMLLLCKKFFHEAI--PDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDL 418 (638)
Q Consensus 341 n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L 418 (638)
|..... ..+..+++|+.|++++|.+.... +... ..+++|++|++++|.+.+ +|..+..+++|++|++
T Consensus 338 n~~~~~----~~~~~l~~L~~L~ls~n~l~~~~~~~~~~------~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l 406 (606)
T 3vq2_A 338 NKGSIS----FKKVALPSLSYLDLSRNALSFSGCCSYSD------LGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDF 406 (606)
T ss_dssp CSSCEE----CCCCCCTTCCEEECCSSCEEEEEECCHHH------HCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEEC
T ss_pred CcCccc----hhhccCCCCCEEECcCCccCCCcchhhhh------ccCCcccEeECCCCcccc-chhhccCCCCCCeeEC
Confidence 633211 12345566666666666554431 2211 245566666666666553 3345555666666666
Q ss_pred CCCccccCcC-ccccCCCCCCEEEccCCcCccccchhhhhhccchhhhccccCCCCCCcccccccccchhhhhccccccc
Q 038036 419 GSNQITGSIP-GWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLF 497 (638)
Q Consensus 419 ~~n~l~~~~~-~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~ 497 (638)
++|.+.+..+ ..+..+++|++|++++|.+.+..|..+.++++|+
T Consensus 407 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~----------------------------------- 451 (606)
T 3vq2_A 407 QHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLN----------------------------------- 451 (606)
T ss_dssp TTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC-----------------------------------
T ss_pred CCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCC-----------------------------------
Confidence 6666665544 4555666666666666666655555555555554
Q ss_pred CCCCeEEccCCcccc-cCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEe
Q 038036 498 SLPPAIYLRNNSLNG-SIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFS 576 (638)
Q Consensus 498 ~~~~~L~ls~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 576 (638)
.|++++|.+++ .+|..+..+++|++|+|++|.+++..|..|..+++|++|++++|++++..|..+..+++|++|+
T Consensus 452 ----~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 527 (606)
T 3vq2_A 452 ----TLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLD 527 (606)
T ss_dssp ----EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEE
T ss_pred ----EEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEE
Confidence 68899999887 4688888999999999999999988888899999999999999999988888999999999999
Q ss_pred cccCceeecCCCC-CcCC-CcCCCccCCCCCCCCCC
Q 038036 577 VANNDLQGQIPSG-GQFL-TFPSSSFEGNPRFCGDI 610 (638)
Q Consensus 577 l~~n~l~~~~p~~-~~~~-~l~~~~~~~n~~lc~~~ 610 (638)
+++|+++ .+|.. ..+. ++..+.+++||+.|+..
T Consensus 528 l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 528 CSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp CTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred CCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 9999988 56655 2333 47788899999998654
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=7.9e-51 Score=453.96 Aligned_cols=534 Identities=22% Similarity=0.234 Sum_probs=433.3
Q ss_pred CCCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcE
Q 038036 35 KARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLIT 114 (638)
Q Consensus 35 ~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~ 114 (638)
..++++|++++|.+.+..+.+++++++|++|++++|.++ .++...|..+++|++|++++|.+++ ++...+..+++|++
T Consensus 48 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~ 125 (680)
T 1ziw_A 48 YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLIT 125 (680)
T ss_dssp GTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCC-CCSCTTTTCTTCCE
T ss_pred CCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEEECCCCccCc-cChhHccccCCCCE
Confidence 468999999999999888889999999999999999998 6888889999999999999999984 44445677999999
Q ss_pred EEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCC--CCCCCcEEEcccccccccCCccccCC-------
Q 038036 115 LNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLG--NCSKLQTFRAGFNYLSGSIPDDISAA------- 185 (638)
Q Consensus 115 L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~--~l~~L~~L~l~~n~~~~~~~~~~~~l------- 185 (638)
|++++|.+.+..+..+. ++++|++|++++|.+++..+..+. .+++|++|++++|.+.+..|..+..+
T Consensus 126 L~Ls~n~l~~~~~~~~~----~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 201 (680)
T 1ziw_A 126 LDLSHNGLSSTKLGTQV----QLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLF 201 (680)
T ss_dssp EECCSSCCSCCCCCSSS----CCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEE
T ss_pred EECCCCcccccCchhhc----ccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhh
Confidence 99999999887766554 799999999999999876665543 56899999999999987777665543
Q ss_pred --------------------CCCCEEEccCCCCccccCccccCCCC--CCEEEeecCcCcccCCcccCCCCCCCEEEccC
Q 038036 186 --------------------TSLQEISLPGNQLSGAISDGVGNLTS--LSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHT 243 (638)
Q Consensus 186 --------------------~~L~~L~L~~n~i~~~~~~~l~~l~~--L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~ 243 (638)
++|++|++++|.+.+..+..+..++. |++|++++|.+++..+..+..+++|++|++++
T Consensus 202 l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 281 (680)
T 1ziw_A 202 LNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 281 (680)
T ss_dssp CTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCC
Confidence 56788888888888777888887755 99999999999988888899999999999999
Q ss_pred CCCCCCcchhhcCCCCCcEEEccCccccc--------ccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcC
Q 038036 244 NSLSGFLPQSLMNCTNLITLNLRINNFRG--------DLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLS 315 (638)
Q Consensus 244 n~i~~~~~~~l~~l~~L~~L~L~~n~l~~--------~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~ 315 (638)
|.+.+..+..+.++++|+.|++++|...+ .+....+..+++|+.|++++|.+.+..+..+..+++|++|+++
T Consensus 282 n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 361 (680)
T 1ziw_A 282 NNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS 361 (680)
T ss_dssp CCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECT
T ss_pred CccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECC
Confidence 99998888889999999999998875442 1222357788999999999999998888889999999999999
Q ss_pred CCccccc--Cchhhhc--CCCCCEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccE
Q 038036 316 RNKIVGQ--ISPEILA--LESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLV 391 (638)
Q Consensus 316 ~n~i~~~--~~~~l~~--l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 391 (638)
+|.+... ....+.. .++|+.|++++|.++.+.. ..+..+++|+.|++++|.+.+..+.... ..+++|++
T Consensus 362 ~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~~~~~~-----~~l~~L~~ 434 (680)
T 1ziw_A 362 NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES--DAFSWLGHLEVLDLGLNEIGQELTGQEW-----RGLENIFE 434 (680)
T ss_dssp TCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECT--TTTTTCTTCCEEECCSSCCEEECCSGGG-----TTCTTCCE
T ss_pred CCchhhhhcchhhhcccccCcCceEECCCCCCCeECh--hhhhCCCCCCEEeCCCCcCccccCcccc-----cCcccccE
Confidence 9875422 2223332 3689999999999886643 4567889999999999998876664333 36789999
Q ss_pred EEeeCCcccccchHHhhcCCCCCEEecCCCccc--cCcCccccCCCCCCEEEccCCcCccccchhhhhhccchhhhcccc
Q 038036 392 LGIGDCEIKGQIPTWLARLKKLQVLDLGSNQIT--GSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNR 469 (638)
Q Consensus 392 L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~ 469 (638)
|++++|.+.+..+..+..+++|+.|++++|.+. +..|..+..+++|++|++++|.+++..+..|.++++|+.++++.+
T Consensus 435 L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N 514 (680)
T 1ziw_A 435 IYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHN 514 (680)
T ss_dssp EECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCC
Confidence 999999998888888999999999999999886 467888999999999999999999888888999999998888765
Q ss_pred CCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCC
Q 038036 470 ADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLE 549 (638)
Q Consensus 470 ~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 549 (638)
.-....... + +... ...-.-..-.+.|++++|+++...+..|.++++|++|+|++|++++..+..|..+++|+
T Consensus 515 ~l~~~~~~~-~-~~~~-----~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~ 587 (680)
T 1ziw_A 515 NLARLWKHA-N-PGGP-----IYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLK 587 (680)
T ss_dssp CCGGGGSTT-S-TTSC-----CCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred Cccccchhh-c-cCCc-----chhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCC
Confidence 422110000 0 0000 00000011234899999999955555799999999999999999977777789999999
Q ss_pred eeeCCCCcceecCCcccc-ccCCCCeEecccCceeecCCC
Q 038036 550 GLDLSENNLHGEIPLSII-DLHFLSSFSVANNDLQGQIPS 588 (638)
Q Consensus 550 ~L~Ls~n~l~~~~p~~l~-~l~~L~~L~l~~n~l~~~~p~ 588 (638)
.|++++|++++..|..+. .+++|+.+++++|++....+.
T Consensus 588 ~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 588 SLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp EEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred EEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 999999999988777777 789999999999999976664
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3e-51 Score=451.27 Aligned_cols=491 Identities=20% Similarity=0.188 Sum_probs=419.8
Q ss_pred CCCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcE
Q 038036 35 KARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLIT 114 (638)
Q Consensus 35 ~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~ 114 (638)
..++++|++++|.+++..+.+++++++|++|++++|.++ .++...|..+++|++|+|++|.+++..|. .+..+++|++
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~ 108 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGNPIQSFSPG-SFSGLTSLEN 108 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCCCCTT-SSTTCTTCCE
T ss_pred CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc-ccCHHHhhchhhcCEeECCCCcccccChh-hcCCcccCCE
Confidence 468999999999999888889999999999999999998 57777889999999999999999955555 4567999999
Q ss_pred EEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCc-cCCccCCCCCCCcEEEcccccccccCCccccCCCCCC----
Q 038036 115 LNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSG-QLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQ---- 189 (638)
Q Consensus 115 L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~---- 189 (638)
|++++|.+.+..+..+. ++++|++|++++|.+.+ .+|..++++++|++|++++|.+.+..+..+..+++|+
T Consensus 109 L~L~~n~l~~~~~~~~~----~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~ 184 (606)
T 3vq2_A 109 LVAVETKLASLESFPIG----QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNL 184 (606)
T ss_dssp EECTTSCCCCSSSSCCT----TCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCC
T ss_pred EEccCCccccccccccC----CCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccc
Confidence 99999999876655444 89999999999999986 5799999999999999999999987787777766554
Q ss_pred EEEccCCCCccccCccccCCCCCCEEEeecCcCc-ccCCcccCCCCCCCEEEc---------------------------
Q 038036 190 EISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFS-GLIPQDIGKLTNLKSLQL--------------------------- 241 (638)
Q Consensus 190 ~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~L--------------------------- 241 (638)
+|++++|.+....+..+... +|++|++++|.+. +..+..+..++.++.+++
T Consensus 185 ~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l 263 (606)
T 3vq2_A 185 SLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTI 263 (606)
T ss_dssp EEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEE
T ss_pred eeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccH
Confidence 89999999996666655554 8999999999876 334455666666665554
Q ss_pred ------cCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcC
Q 038036 242 ------HTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLS 315 (638)
Q Consensus 242 ------~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~ 315 (638)
..+.+.+..|. +..+++|+.|++++|.+. .++ .+..+++|+.|++++|.+ +.+| .+ .+++|++|+++
T Consensus 264 ~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~--~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~ 336 (606)
T 3vq2_A 264 DEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE--DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLT 336 (606)
T ss_dssp EEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC--CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEE
T ss_pred hheeccccccccccccc-cccCCCCCEEEecCccch-hhh--hccccccCCEEEcccccC-cccc-cC-CCCccceeecc
Confidence 45566655565 888999999999999986 555 688899999999999999 4777 44 89999999999
Q ss_pred CCcccccCchhhhcCCCCCEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEee
Q 038036 316 RNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIG 395 (638)
Q Consensus 316 ~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 395 (638)
+|...+.. .+..+++|+.|++++|.++.+......+..+++|+.|++++|.+.... .. ...+++|+.|+++
T Consensus 337 ~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~------~~~l~~L~~L~l~ 407 (606)
T 3vq2_A 337 MNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-AN------FMGLEELQHLDFQ 407 (606)
T ss_dssp SCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-CC------CTTCTTCCEEECT
T ss_pred CCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch-hh------ccCCCCCCeeECC
Confidence 99655443 567899999999999998876444456788999999999999877633 21 1367899999999
Q ss_pred CCcccccch-HHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCcc-ccchhhhhhccchhhhccccCCCC
Q 038036 396 DCEIKGQIP-TWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISG-EFPKEFCGLRALALQEVKNRADGS 473 (638)
Q Consensus 396 ~~~~~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~l~~~~~~~~~ 473 (638)
+|.+.+..+ ..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+ .+|..+..+++|+
T Consensus 408 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~----------- 476 (606)
T 3vq2_A 408 HSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLT----------- 476 (606)
T ss_dssp TSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC-----------
T ss_pred CCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCC-----------
Confidence 999998877 688999999999999999999899999999999999999999987 4788888888887
Q ss_pred CCcccccccccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeC
Q 038036 474 QLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDL 553 (638)
Q Consensus 474 ~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 553 (638)
.|++++|.+++..|..+.++++|++|+|++|++++..|..|..+++|+.|++
T Consensus 477 ----------------------------~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l 528 (606)
T 3vq2_A 477 ----------------------------FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC 528 (606)
T ss_dssp ----------------------------EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEEC
T ss_pred ----------------------------EEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEEC
Confidence 7999999999999999999999999999999999888999999999999999
Q ss_pred CCCcceecCCccccccC-CCCeEecccCceeecCCC
Q 038036 554 SENNLHGEIPLSIIDLH-FLSSFSVANNDLQGQIPS 588 (638)
Q Consensus 554 s~n~l~~~~p~~l~~l~-~L~~L~l~~n~l~~~~p~ 588 (638)
++|+++ .+|..+..++ +|+.|++++|++.+..+.
T Consensus 529 ~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 529 SFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp TTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred CCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 999999 6777799997 599999999999976664
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.2e-52 Score=459.75 Aligned_cols=484 Identities=20% Similarity=0.267 Sum_probs=365.8
Q ss_pred CCCCCCCCCCCCcCc---cceEECCCCCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCC------C------CCc
Q 038036 13 NPPLNWSFSTDCCFW---EGIKCDSKARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLS------G------PLA 77 (638)
Q Consensus 13 ~~~~~w~~~~~~~~w---~g~~c~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~------~------~~~ 77 (638)
+...+|+.+.+||.| .||.|+..+||++|+|+++++.|.+|++++++++|++|+|++|.+. + .+|
T Consensus 55 ~~~~~W~~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~ 134 (636)
T 4eco_A 55 QPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMS 134 (636)
T ss_dssp ---CCCCCSSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCC
T ss_pred ccCCCCCCCCCcccccCCCCeEEcCCCCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCch
Confidence 456789999999999 9999988899999999999999999999999999999999999752 1 222
Q ss_pred cccccccceecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEc--cCCcCCccCC
Q 038036 78 INSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDF--SYNDFSGQLP 155 (638)
Q Consensus 78 ~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~l--s~n~i~~~~~ 155 (638)
.. .+..|+ ++++++.+.+.++..+...+..+..+++....+... ....++.+.+ ..|.+++ +|
T Consensus 135 ~~---~~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~----------~~~~l~~l~l~~~~n~l~~-ip 199 (636)
T 4eco_A 135 DE---QKQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKS----------SRITLKDTQIGQLSNNITF-VS 199 (636)
T ss_dssp HH---HHHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCC----------CCCCCCTTTTTCCSCEEEE-EC
T ss_pred HH---HHHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccccccccc----------cccchhhhhhccccCCCcc-CC
Confidence 21 134466 777777777666554433333333333332222100 1122222222 2467776 78
Q ss_pred ccCCCCCCCcEEEccccccccc-----------------CCcccc--CCCCCCEEEccCCCCccccCccccCCCCCCEEE
Q 038036 156 PGLGNCSKLQTFRAGFNYLSGS-----------------IPDDIS--AATSLQEISLPGNQLSGAISDGVGNLTSLSMLD 216 (638)
Q Consensus 156 ~~l~~l~~L~~L~l~~n~~~~~-----------------~~~~~~--~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ 216 (638)
..++++++|++|++++|.+++. +|..+. ++++|++|++++|.+.+.+|..+.++++|++|+
T Consensus 200 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 279 (636)
T 4eco_A 200 KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLIN 279 (636)
T ss_dssp GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEE
T ss_pred HHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEE
Confidence 8888888999999998888864 888888 899999999999998888888899999999999
Q ss_pred eecCc-Ccc-cCCcccCCC------CCCCEEEccCCCCCCCcch--hhcCCCCCcEEEccCcccccccCcccccCCCCcc
Q 038036 217 LQSNK-FSG-LIPQDIGKL------TNLKSLQLHTNSLSGFLPQ--SLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLH 286 (638)
Q Consensus 217 l~~n~-l~~-~~~~~l~~l------~~L~~L~L~~n~i~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~ 286 (638)
+++|+ +++ .+|..++.+ ++|++|++++|.++ .+|. .+.++++|+.|++++|.+.+.++ .+..+++|+
T Consensus 280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~ 356 (636)
T 4eco_A 280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLA 356 (636)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEES
T ss_pred CcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh--hhCCCCCCC
Confidence 99998 887 677777765 89999999999998 7777 89999999999999999987777 678888999
Q ss_pred EEecCCCcccccccccCcCCCC-CCEEEcCCCcccccCchhhhcCC--CCCEEEccCCcCCCCccccccccCCCCCcEEE
Q 038036 287 TIDLGNNNFTGSFPLTLTSCKV-LTAIRLSRNKIVGQISPEILALE--SLSYLSITNNNFSNITGAIRILMGCKNLRMLL 363 (638)
Q Consensus 287 ~L~l~~n~i~~~~~~~l~~~~~-L~~L~L~~n~i~~~~~~~l~~l~--~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 363 (638)
.|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+...+ +|+.|++++|.+....+. .+..+
T Consensus 357 ~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~--~l~~~------- 425 (636)
T 4eco_A 357 SLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGK--NFDPL------- 425 (636)
T ss_dssp EEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTC--SSCTT-------
T ss_pred EEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchh--hhccc-------
Confidence 9999999998 78888888888 999999999988 6777766544 899999999988754321 01100
Q ss_pred cCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCccccCC-------CC
Q 038036 364 LCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNM-------PN 436 (638)
Q Consensus 364 l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l-------~~ 436 (638)
......+++|++|++++|.+....+..+..+++|++|++++|.++...+..+... ++
T Consensus 426 ----------------~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~ 489 (636)
T 4eco_A 426 ----------------DPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYL 489 (636)
T ss_dssp ----------------CSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGG
T ss_pred ----------------ccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCC
Confidence 0000134567778888887775555556678888888888888884333333333 28
Q ss_pred CCEEEccCCcCccccchhhh--hhccchhhhccccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccC
Q 038036 437 LFYIDLSYNSISGEFPKEFC--GLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSI 514 (638)
Q Consensus 437 L~~L~L~~n~i~~~~~~~~~--~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~ 514 (638)
|++|++++|.++ .+|..+. .+++|+ .|++++|++++ +
T Consensus 490 L~~L~Ls~N~l~-~lp~~~~~~~l~~L~---------------------------------------~L~Ls~N~l~~-i 528 (636)
T 4eco_A 490 LTSIDLRFNKLT-KLSDDFRATTLPYLV---------------------------------------GIDLSYNSFSK-F 528 (636)
T ss_dssp CCEEECCSSCCC-BCCGGGSTTTCTTCC---------------------------------------EEECCSSCCSS-C
T ss_pred ccEEECcCCcCC-ccChhhhhccCCCcC---------------------------------------EEECCCCCCCC-c
Confidence 888888888887 6776665 666665 68888888886 7
Q ss_pred chhhhcCcCCCeeeC------CCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecccCceeec
Q 038036 515 PIEIGNLKFLHVLDL------SLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQ 585 (638)
Q Consensus 515 ~~~l~~l~~L~~L~L------s~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~ 585 (638)
|..+.++++|++|+| ++|.+.+.+|..+..+++|+.|+|++|++ +.+|..+. ++|+.|++++|++...
T Consensus 529 p~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 529 PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISI 602 (636)
T ss_dssp CCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred ChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCccc
Confidence 888888888999988 45777778888899999999999999999 47777665 7899999999988743
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.1e-50 Score=457.69 Aligned_cols=521 Identities=19% Similarity=0.190 Sum_probs=421.3
Q ss_pred cCccceEECCCCCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHH
Q 038036 25 CFWEGIKCDSKARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSS 104 (638)
Q Consensus 25 ~~w~g~~c~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~ 104 (638)
++|..|.+ ...++++|+|++|.+++..+..++++++|++|+|++|...+.++...|..+++|++|+|++|.+++..|.
T Consensus 14 ~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~- 91 (844)
T 3j0a_A 14 CNLTQVPQ-VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD- 91 (844)
T ss_dssp CCSSCCCS-SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT-
T ss_pred CCCCCCCC-CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh-
Confidence 56888887 6789999999999999988999999999999999999777788888899999999999999999955554
Q ss_pred HHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCC-ccCCCCCCCcEEEcccccccccCCcccc
Q 038036 105 FFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLP-PGLGNCSKLQTFRAGFNYLSGSIPDDIS 183 (638)
Q Consensus 105 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 183 (638)
.+..+++|++|+|++|.+.+..+.. ..+..+++|++|++++|.+++..+ ..|+++++|++|++++|.+.+..+..+.
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~ 169 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKD--GYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELE 169 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTT--CCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGH
T ss_pred HccCCcccCEeeCcCCCCCcccccC--ccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcc
Confidence 5567999999999999998755432 113389999999999999986644 5789999999999999999988888888
Q ss_pred CC--CCCCEEEccCCCCccccCccccCCCC------CCEEEeecCcCcccCCcccCC---CCCCCEEEccCC--------
Q 038036 184 AA--TSLQEISLPGNQLSGAISDGVGNLTS------LSMLDLQSNKFSGLIPQDIGK---LTNLKSLQLHTN-------- 244 (638)
Q Consensus 184 ~l--~~L~~L~L~~n~i~~~~~~~l~~l~~------L~~L~l~~n~l~~~~~~~l~~---l~~L~~L~L~~n-------- 244 (638)
.+ ++|++|++++|.+.+..+..+..+.+ |++|++++|.+++..+..+.. ..+++.+.+..+
T Consensus 170 ~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~ 249 (844)
T 3j0a_A 170 PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGF 249 (844)
T ss_dssp HHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSC
T ss_pred cccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccc
Confidence 77 89999999999999877777766665 999999999988776665543 256777877633
Q ss_pred -CCCCCcchhhcCC--CCCcEEEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccc
Q 038036 245 -SLSGFLPQSLMNC--TNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVG 321 (638)
Q Consensus 245 -~i~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~ 321 (638)
.+.+.....+.++ ++|+.|++++|.+.+ +....+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus 250 ~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 328 (844)
T 3j0a_A 250 HNIKDPDQNTFAGLARSSVRHLDLSHGFVFS-LNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGE 328 (844)
T ss_dssp SSSTTGGGTTTTTTTTSCCCEEECTTCCCCE-ECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSC
T ss_pred cccCCCChhhhhccccCCccEEECCCCcccc-cChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCc
Confidence 3333334445544 689999999998874 444578889999999999999988888888899999999999999987
Q ss_pred cCchhhhcCCCCCEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccc
Q 038036 322 QISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKG 401 (638)
Q Consensus 322 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 401 (638)
..+..+..+++|+.|++++|.+..++. ..+..+++|+.|++++|.+.... .+++|+.|++++|.+..
T Consensus 329 ~~~~~~~~l~~L~~L~L~~N~i~~~~~--~~~~~l~~L~~L~Ls~N~l~~i~-----------~~~~L~~L~l~~N~l~~ 395 (844)
T 3j0a_A 329 LYSSNFYGLPKVAYIDLQKNHIAIIQD--QTFKFLEKLQTLDLRDNALTTIH-----------FIPSIPDIFLSGNKLVT 395 (844)
T ss_dssp CCSCSCSSCTTCCEEECCSCCCCCCCS--SCSCSCCCCCEEEEETCCSCCCS-----------SCCSCSEEEEESCCCCC
T ss_pred cCHHHhcCCCCCCEEECCCCCCCccCh--hhhcCCCCCCEEECCCCCCCccc-----------CCCCcchhccCCCCccc
Confidence 778888899999999999998887664 34677899999999998876421 36789999999998874
Q ss_pred cchHHhhcCCCCCEEecCCCccccCcC-ccccCCCCCCEEEccCCcCccccch-hhhhhccchhhhccccCCCCCCcccc
Q 038036 402 QIPTWLARLKKLQVLDLGSNQITGSIP-GWLGNMPNLFYIDLSYNSISGEFPK-EFCGLRALALQEVKNRADGSQLQLPL 479 (638)
Q Consensus 402 ~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~l~~~~~~~~~~~~~~~ 479 (638)
+|. ...+++.|++++|.+.+... ..+..+++|++|++++|++++..+. .+..+++|+
T Consensus 396 -l~~---~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~----------------- 454 (844)
T 3j0a_A 396 -LPK---INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLE----------------- 454 (844)
T ss_dssp -CCC---CCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCC-----------------
T ss_pred -ccc---cccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccc-----------------
Confidence 333 25678999999999886432 3456889999999999998754432 233344443
Q ss_pred cccccchhhhhcccccccCCCCeEEccCCccc-----ccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCC
Q 038036 480 FVPKTKIALYNQQYNKLFSLPPAIYLRNNSLN-----GSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLS 554 (638)
Q Consensus 480 ~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~-----~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 554 (638)
.|++++|.++ +..+..|.++++|++|+|++|.+++..|..|..+++|+.|+|+
T Consensus 455 ----------------------~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 512 (844)
T 3j0a_A 455 ----------------------QLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLN 512 (844)
T ss_dssp ----------------------BCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEE
T ss_pred ----------------------cccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECC
Confidence 5778888876 3444568889999999999999998888889999999999999
Q ss_pred CCcceecCCccccccCCCCeEecccCceeecCCCCCcCCCcCCCccCCCCCCCCCC
Q 038036 555 ENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPSGGQFLTFPSSSFEGNPRFCGDI 610 (638)
Q Consensus 555 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~ 610 (638)
+|++++..|..+. ++|+.|++++|++++.+|.. +.++..+.+.|||+.|+..
T Consensus 513 ~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 513 SNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECE 564 (844)
T ss_dssp SCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSS
T ss_pred CCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCcccccc
Confidence 9999976666665 78999999999999888854 5578888999999999543
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.3e-49 Score=449.19 Aligned_cols=501 Identities=19% Similarity=0.164 Sum_probs=411.1
Q ss_pred EEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEEcc
Q 038036 39 THLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVS 118 (638)
Q Consensus 39 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls 118 (638)
...+.++++++. +|. -.+++++|+|++|.++ .+....|..+.+|++|+|++|.+.+.++...+..+++|++|+|+
T Consensus 7 ~~~dcs~~~L~~-vP~---lp~~l~~LdLs~N~i~-~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 7 RIAFYRFCNLTQ-VPQ---VLNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp EEEEESCCCSSC-CCS---SCTTCCEEEEESCCCC-EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred eEEEccCCCCCC-CCC---CCCCcCEEECCCCcCC-ccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence 345667777764 565 4589999999999998 56667789999999999999976667766667889999999999
Q ss_pred cCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCcc--CCCCCCCcEEEcccccccccCC-ccccCCCCCCEEEccC
Q 038036 119 HNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPG--LGNCSKLQTFRAGFNYLSGSIP-DDISAATSLQEISLPG 195 (638)
Q Consensus 119 ~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~--l~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~ 195 (638)
+|.+.+..|..+. ++++|++|++++|.+++..+.. +.++++|++|++++|.+.+..+ ..|.++++|++|++++
T Consensus 82 ~N~l~~~~p~~~~----~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~ 157 (844)
T 3j0a_A 82 SSKIYFLHPDAFQ----GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS 157 (844)
T ss_dssp TCCCCEECTTSSC----SCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEES
T ss_pred CCcCcccCHhHcc----CCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCC
Confidence 9999988777665 8999999999999998766654 8999999999999999986654 5789999999999999
Q ss_pred CCCccccCccccCC--CCCCEEEeecCcCcccCCcccCCCCC------CCEEEccCCCCCCCcchhhcCC---CCCcEEE
Q 038036 196 NQLSGAISDGVGNL--TSLSMLDLQSNKFSGLIPQDIGKLTN------LKSLQLHTNSLSGFLPQSLMNC---TNLITLN 264 (638)
Q Consensus 196 n~i~~~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~l~~l~~------L~~L~L~~n~i~~~~~~~l~~l---~~L~~L~ 264 (638)
|.+.+..+..+..+ ++|+.|++++|.+.+..+..+..+++ |++|++++|.+++..+..+... ..++.+.
T Consensus 158 N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~ 237 (844)
T 3j0a_A 158 NQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI 237 (844)
T ss_dssp SCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEE
T ss_pred CcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccccccee
Confidence 99998888888877 89999999999999887777766655 9999999999887777666543 6788888
Q ss_pred ccCccccc--------ccCcccccCC--CCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCC
Q 038036 265 LRINNFRG--------DLSAYNFSTL--HNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLS 334 (638)
Q Consensus 265 L~~n~l~~--------~~~~~~~~~~--~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~ 334 (638)
+..+.... ......+..+ ++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+
T Consensus 238 l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 317 (844)
T 3j0a_A 238 LAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQ 317 (844)
T ss_dssp CCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCC
T ss_pred cccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCC
Confidence 87443221 1222234443 6899999999999988889999999999999999999988888999999999
Q ss_pred EEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchHHhhcCCCCC
Q 038036 335 YLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQ 414 (638)
Q Consensus 335 ~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 414 (638)
.|++++|.+..+.. ..+..+++|+.|++++|.+....+..+ ..+++|+.|++++|.+.+. ..+++|+
T Consensus 318 ~L~Ls~N~l~~~~~--~~~~~l~~L~~L~L~~N~i~~~~~~~~------~~l~~L~~L~Ls~N~l~~i-----~~~~~L~ 384 (844)
T 3j0a_A 318 VLNLSYNLLGELYS--SNFYGLPKVAYIDLQKNHIAIIQDQTF------KFLEKLQTLDLRDNALTTI-----HFIPSIP 384 (844)
T ss_dssp EEEEESCCCSCCCS--CSCSSCTTCCEEECCSCCCCCCCSSCS------CSCCCCCEEEEETCCSCCC-----SSCCSCS
T ss_pred EEECCCCCCCccCH--HHhcCCCCCCEEECCCCCCCccChhhh------cCCCCCCEEECCCCCCCcc-----cCCCCcc
Confidence 99999999986643 457789999999999998866554432 3678999999999998853 2388999
Q ss_pred EEecCCCccccCcCccccCCCCCCEEEccCCcCccccc-hhhhhhccchhhhccccCCCCCCcccccccccchhhhhccc
Q 038036 415 VLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFP-KEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQY 493 (638)
Q Consensus 415 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 493 (638)
.|++++|+++ .+|.. ..+++.|++++|.+.+... ..+.++++|+
T Consensus 385 ~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~------------------------------- 429 (844)
T 3j0a_A 385 DIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQ------------------------------- 429 (844)
T ss_dssp EEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCC-------------------------------
T ss_pred hhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccc-------------------------------
Confidence 9999999998 44543 5689999999999985422 2233555554
Q ss_pred ccccCCCCeEEccCCcccccCch-hhhcCcCCCeeeCCCCeee-----ecCChhhhCCCCCCeeeCCCCcceecCCcccc
Q 038036 494 NKLFSLPPAIYLRNNSLNGSIPI-EIGNLKFLHVLDLSLNNFS-----GEIPDQISQLTNLEGLDLSENNLHGEIPLSII 567 (638)
Q Consensus 494 ~~l~~~~~~L~ls~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~-----~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~ 567 (638)
.|++++|++++..+. .+..+++|+.|+|++|.++ +..++.|..+++|+.|+|++|++++..|..+.
T Consensus 430 --------~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 501 (844)
T 3j0a_A 430 --------ILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFS 501 (844)
T ss_dssp --------EEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSS
T ss_pred --------eeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHcc
Confidence 799999999865443 4567899999999999997 44557789999999999999999988889999
Q ss_pred ccCCCCeEecccCceeecCCCCCcCCCcCCCccCCCCC
Q 038036 568 DLHFLSSFSVANNDLQGQIPSGGQFLTFPSSSFEGNPR 605 (638)
Q Consensus 568 ~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~n~~ 605 (638)
.+++|+.|+|++|++++..|... ..++..+.+++|..
T Consensus 502 ~l~~L~~L~Ls~N~l~~l~~~~~-~~~L~~L~Ls~N~l 538 (844)
T 3j0a_A 502 HLTALRGLSLNSNRLTVLSHNDL-PANLEILDISRNQL 538 (844)
T ss_dssp SCCSCSEEEEESCCCSSCCCCCC-CSCCCEEEEEEECC
T ss_pred chhhhheeECCCCCCCccChhhh-hccccEEECCCCcC
Confidence 99999999999999996554433 37788888888843
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.7e-48 Score=430.90 Aligned_cols=469 Identities=18% Similarity=0.201 Sum_probs=248.0
Q ss_pred CCCCCC-----CC--cCc------------cceEECCCCCeEEEECCCCCceeeccccCcCCCCCCEEEC-CCCCCCCCC
Q 038036 17 NWSFST-----DC--CFW------------EGIKCDSKARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNL-SHNHLSGPL 76 (638)
Q Consensus 17 ~w~~~~-----~~--~~w------------~g~~c~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L-s~n~l~~~~ 76 (638)
+|+.+. ++ |.| .||.|+..++|++|+|+++++.|.+|++++++++|++|+| ++|.+.|..
T Consensus 285 ~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~ 364 (876)
T 4ecn_A 285 NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGR 364 (876)
T ss_dssp GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTT
T ss_pred CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCcCchHHhccccceEeeecccccccccc
Confidence 786543 55 899 9999998899999999999999999999999999999999 888776543
Q ss_pred ccccccc--------------------------------------------------cceecEEEcC--CccccccccHH
Q 038036 77 AINSFSF--------------------------------------------------VIHLETLDLS--YNSFSGQFLSS 104 (638)
Q Consensus 77 ~~~~~~~--------------------------------------------------~~~L~~L~Ls--~n~i~~~~~~~ 104 (638)
+...... ...++.+.+. +|++++ +|..
T Consensus 365 ~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~ 443 (876)
T 4ecn_A 365 LFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKA 443 (876)
T ss_dssp CBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGG
T ss_pred cccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHH
Confidence 3221100 0112222222 245554 4443
Q ss_pred HHhcCCCCcEEEcccCcCccc-----------------CCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEE
Q 038036 105 FFQLAENLITLNVSHNMFSGS-----------------IPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTF 167 (638)
Q Consensus 105 ~~~~~~~L~~L~Ls~n~l~~~-----------------~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L 167 (638)
+..+++|++|+|++|.+++. +|..+. +.++++|++|++++|.+.+.+|..+.++++|++|
T Consensus 444 -l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~--f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L 520 (876)
T 4ecn_A 444 -IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELS--WSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL 520 (876)
T ss_dssp -GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCC--GGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEE
T ss_pred -HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhh--hccCCCCCEEECcCCCCCccChHHHhCCCCCCEE
Confidence 33456666666666665551 222110 1134555555555555555555555555555555
Q ss_pred Eccccc-ccc-cCCccccCCC-------CCCEEEccCCCCccccCc--cccCCCCCCEEEeecCcCcccCCcccCCCCCC
Q 038036 168 RAGFNY-LSG-SIPDDISAAT-------SLQEISLPGNQLSGAISD--GVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNL 236 (638)
Q Consensus 168 ~l~~n~-~~~-~~~~~~~~l~-------~L~~L~L~~n~i~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 236 (638)
++++|. +++ .+|..+..++ +|++|++++|.+. .+|. .+..+++|++|++++|.++ .+| .+..+++|
T Consensus 521 ~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L 597 (876)
T 4ecn_A 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKL 597 (876)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEE
T ss_pred ECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcc
Confidence 555554 444 3444333332 5555555555555 4444 4555555555555555554 334 45555555
Q ss_pred CEEEccCCCCCCCcchhhcCCCC-CcEEEccCcccccccCcccccCCC--CccEEecCCCcccccccccC---c--CCCC
Q 038036 237 KSLQLHTNSLSGFLPQSLMNCTN-LITLNLRINNFRGDLSAYNFSTLH--NLHTIDLGNNNFTGSFPLTL---T--SCKV 308 (638)
Q Consensus 237 ~~L~L~~n~i~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~~~~~~~--~L~~L~l~~n~i~~~~~~~l---~--~~~~ 308 (638)
++|++++|.++ .+|..+.++++ |+.|++++|.+. .++. .+...+ +|+.|++++|.+.+.+|... . .+++
T Consensus 598 ~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~-~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~ 674 (876)
T 4ecn_A 598 TDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPN-IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN 674 (876)
T ss_dssp SEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCS-CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCC
T ss_pred eEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCch-hhhccccCCCCEEECcCCcCCCccccchhhhccccCCC
Confidence 55555555555 44444555554 555555555544 3332 222222 25555555555544332111 1 1224
Q ss_pred CCEEEcCCCcccccCchh-hhcCCCCCEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCC
Q 038036 309 LTAIRLSRNKIVGQISPE-ILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQ 387 (638)
Q Consensus 309 L~~L~L~~n~i~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 387 (638)
|+.|++++|.+. .+|.. +..+++|+.|++++|.+..++...... .. .....++
T Consensus 675 L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~--~~-----------------------~~l~nl~ 728 (876)
T 4ecn_A 675 ASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKP--KD-----------------------GNYKNTY 728 (876)
T ss_dssp EEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSC--TT-----------------------SCCTTGG
T ss_pred cCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhcc--cc-----------------------ccccccC
Confidence 444444444444 22222 224444444444444444333211000 00 0000112
Q ss_pred CccEEEeeCCcccccchHHhh--cCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhhccchhhh
Q 038036 388 NLLVLGIGDCEIKGQIPTWLA--RLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQE 465 (638)
Q Consensus 388 ~L~~L~l~~~~~~~~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~ 465 (638)
+|+.|++++|.+. .+|..+. .+++|+.|+|++|.+++ +|..+..+++|+.|+|++|+
T Consensus 729 ~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~------------------- 787 (876)
T 4ecn_A 729 LLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR------------------- 787 (876)
T ss_dssp GCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB-------------------
T ss_pred CccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC-------------------
Confidence 3444444444444 2333333 44444444444444443 34344444444444444443
Q ss_pred ccccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCC
Q 038036 466 VKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQL 545 (638)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l 545 (638)
++++|.+.+.+|..+.++++|++|+|++|.+ +.+|..+.
T Consensus 788 --------------------------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~-- 826 (876)
T 4ecn_A 788 --------------------------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT-- 826 (876)
T ss_dssp --------------------------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--
T ss_pred --------------------------------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--
Confidence 1345667777788888888888888888888 47777655
Q ss_pred CCCCeeeCCCCcceecCCccccccCCCCeEecccCcee
Q 038036 546 TNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQ 583 (638)
Q Consensus 546 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 583 (638)
++|+.|+|++|++....+..+.....+..+.+.+|+.+
T Consensus 827 ~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 827 PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred CCCCEEECCCCCCCccChHHccccccchheeecCCCcc
Confidence 58888888888887666666655555556666665544
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.7e-47 Score=418.38 Aligned_cols=489 Identities=19% Similarity=0.192 Sum_probs=215.2
Q ss_pred CeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEE
Q 038036 37 RVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLN 116 (638)
Q Consensus 37 ~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~ 116 (638)
++++|++++|.+++..+.+++++++|++|++++|+++ .++...|..+++|++|+|++|.+++ ++...+..+++|++|+
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLV 106 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEE
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCcCCc-cCHhhhcCcccccccc
Confidence 4555555555554444444555555555555555544 3444444445555555555555442 2222333344455555
Q ss_pred cccCcCcccCCCccccCCCCCCCcCEEEccCCcCCc-cCCccCCCCCCCcEEEcccccccccCCccccCCCCC----CEE
Q 038036 117 VSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSG-QLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSL----QEI 191 (638)
Q Consensus 117 Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L----~~L 191 (638)
+++|.+.+..+..+ ..+++|++|++++|.+++ .+|..++++++|++|++++|.+.+..+..+..+++| ++|
T Consensus 107 L~~n~l~~l~~~~~----~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L 182 (570)
T 2z63_A 107 AVETNLASLENFPI----GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182 (570)
T ss_dssp CTTSCCCCSTTCSC----TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEE
T ss_pred ccccccccCCCccc----cccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhc
Confidence 55544443222111 144444555554444443 234444444444444444444443333444444444 444
Q ss_pred EccCCCCccccCccccCCCCCCEEEeecCcCcc-cCCcccCCCCCCCEEEccCCCC------CCCcchhhcCCC--CCcE
Q 038036 192 SLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSG-LIPQDIGKLTNLKSLQLHTNSL------SGFLPQSLMNCT--NLIT 262 (638)
Q Consensus 192 ~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~i------~~~~~~~l~~l~--~L~~ 262 (638)
++++|.+.+..+..+... +|++|++++|.... ..+..+..++.++.+.+....+ .......+..++ .++.
T Consensus 183 ~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~ 261 (570)
T 2z63_A 183 DLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261 (570)
T ss_dssp ECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEE
T ss_pred ccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhh
Confidence 444444444433333332 34444444442211 1122223333333332221110 000011111111 1223
Q ss_pred EEccCc-ccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCC
Q 038036 263 LNLRIN-NFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNN 341 (638)
Q Consensus 263 L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n 341 (638)
++++.+ .+.+..+ ..+..+++|+.|++++|.+. .+|..+..+ +|++|++++|.+. .+|. ..+++|+.|++++|
T Consensus 262 l~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n 335 (570)
T 2z63_A 262 FRLAYLDYYLDDII-DLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSN 335 (570)
T ss_dssp EEEEETTEEESCST-TTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESC
T ss_pred hhhhcchhhhhhch-hhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCC
Confidence 333333 2221111 23444445555555555444 344444444 4555555555444 2222 23444555555544
Q ss_pred cCCCCccccccccCCCCCcEEEcCCCcccccC--CcchhhhccccCCCCccEEEeeCCcccccchHHhhcCCCCCEEecC
Q 038036 342 NFSNITGAIRILMGCKNLRMLLLCKKFFHEAI--PDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLG 419 (638)
Q Consensus 342 ~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~ 419 (638)
.+...... ..+++|+.|++++|.+.... +... ..+++|++|++++|.+.+..+. +..+++|++|+++
T Consensus 336 ~~~~~~~~----~~~~~L~~L~l~~n~l~~~~~~~~~~------~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~ 404 (570)
T 2z63_A 336 KGGNAFSE----VDLPSLEFLDLSRNGLSFKGCCSQSD------FGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQ 404 (570)
T ss_dssp BSCCBCCC----CBCTTCCEEECCSSCCBEEEEEEHHH------HTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECT
T ss_pred cccccccc----ccCCCCCEEeCcCCccCccccccccc------cccCccCEEECCCCcccccccc-ccccCCCCEEEcc
Confidence 44322111 33444555555444443221 1100 1344444555554444433222 4444445555555
Q ss_pred CCccccCcC-ccccCCCCCCEEEccCCcCccccchhhhhhccchhhhccccCCCCCCcccccccccchhhhhcccccccC
Q 038036 420 SNQITGSIP-GWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFS 498 (638)
Q Consensus 420 ~n~l~~~~~-~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~ 498 (638)
+|.+.+..+ ..+..+++|++|++++|.+.+..|..+.++++|+
T Consensus 405 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~------------------------------------ 448 (570)
T 2z63_A 405 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE------------------------------------ 448 (570)
T ss_dssp TSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC------------------------------------
T ss_pred CCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCc------------------------------------
Confidence 544443333 2344444455555555544444444444444443
Q ss_pred CCCeEEccCCccc-ccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEec
Q 038036 499 LPPAIYLRNNSLN-GSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSV 577 (638)
Q Consensus 499 ~~~~L~ls~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l 577 (638)
.|++++|.++ +.+|..+..+++|++|+|++|++++..|..|..+++|++|++++|++++..|..+..+++|+.|++
T Consensus 449 ---~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 525 (570)
T 2z63_A 449 ---VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWL 525 (570)
T ss_dssp ---EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred ---EEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEe
Confidence 4555555554 345555555556666666666555555555555556666666666555555555555555666666
Q ss_pred ccCceeecCCC
Q 038036 578 ANNDLQGQIPS 588 (638)
Q Consensus 578 ~~n~l~~~~p~ 588 (638)
++|++++..|.
T Consensus 526 ~~N~~~~~~~~ 536 (570)
T 2z63_A 526 HTNPWDCSCPR 536 (570)
T ss_dssp CSSCBCCCTTT
T ss_pred cCCcccCCCcc
Confidence 66665555554
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.4e-46 Score=409.35 Aligned_cols=469 Identities=20% Similarity=0.230 Sum_probs=366.4
Q ss_pred CCCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcE
Q 038036 35 KARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLIT 114 (638)
Q Consensus 35 ~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~ 114 (638)
..++++|++++|.+.+..+.+++++++|++|++++|.++ .++...|.++.+|++|++++|.+++ ++...+..+++|++
T Consensus 51 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~ 128 (570)
T 2z63_A 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKE 128 (570)
T ss_dssp CSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTSCCCC-STTCSCTTCTTCCE
T ss_pred CCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC-ccCHhhhcCcccccccccccccccc-CCCccccccccccE
Confidence 568999999999999887888999999999999999998 6777789999999999999999984 44333667999999
Q ss_pred EEcccCcCcc-cCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCC----cEEEcccccccccCCccccCCCCCC
Q 038036 115 LNVSHNMFSG-SIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKL----QTFRAGFNYLSGSIPDDISAATSLQ 189 (638)
Q Consensus 115 L~Ls~n~l~~-~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L----~~L~l~~n~~~~~~~~~~~~l~~L~ 189 (638)
|++++|.+.+ .+|..+. ++++|++|++++|.+++..+..+..+++| +.+++++|.+.+..+..+... +|+
T Consensus 129 L~L~~n~l~~~~lp~~~~----~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~ 203 (570)
T 2z63_A 129 LNVAHNLIQSFKLPEYFS----NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLH 203 (570)
T ss_dssp EECCSSCCCCCCCCGGGG----GCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEE
T ss_pred EecCCCccceecChhhhc----ccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cce
Confidence 9999999986 3465554 79999999999999998778888888888 899999999997777777655 899
Q ss_pred EEEccCCCCcc-ccCccccCCCCCCEEEeecCcCc------ccCCcccCCCC--CCCEEEccCC-CCCCCcchhhcCCCC
Q 038036 190 EISLPGNQLSG-AISDGVGNLTSLSMLDLQSNKFS------GLIPQDIGKLT--NLKSLQLHTN-SLSGFLPQSLMNCTN 259 (638)
Q Consensus 190 ~L~L~~n~i~~-~~~~~l~~l~~L~~L~l~~n~l~------~~~~~~l~~l~--~L~~L~L~~n-~i~~~~~~~l~~l~~ 259 (638)
+|++++|.... ..+..+..++.++.+.+....+. ......+..++ .++.+++.++ .+.+..+..+..+++
T Consensus 204 ~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~ 283 (570)
T 2z63_A 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN 283 (570)
T ss_dssp EEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTT
T ss_pred eEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCc
Confidence 99999885331 23445566666666555432221 11112222222 2455666665 555566677777788
Q ss_pred CcEEEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEcc
Q 038036 260 LITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSIT 339 (638)
Q Consensus 260 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~ 339 (638)
|+.|++++|.+. .++. .+..+ +|+.|++++|.+. .+|. ..+++|+.|++++|.+.+..+. ..+++|+.|+++
T Consensus 284 L~~L~l~~~~l~-~l~~-~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~ 355 (570)
T 2z63_A 284 VSSFSLVSVTIE-RVKD-FSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLS 355 (570)
T ss_dssp CSEEEEESCEEC-SCCB-CCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECC
T ss_pred ccEEEecCccch-hhhh-hhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCc
Confidence 888888877776 4443 44555 7888888887776 4444 3567788888888777655443 567778888888
Q ss_pred CCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccch-HHhhcCCCCCEEec
Q 038036 340 NNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIP-TWLARLKKLQVLDL 418 (638)
Q Consensus 340 ~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~L 418 (638)
+|.+.........+..+++|+.|++++|.+....+. ...+++|+.|++++|.+.+..+ ..+..+++|++|++
T Consensus 356 ~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-------~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 428 (570)
T 2z63_A 356 RNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-------FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428 (570)
T ss_dssp SSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-------EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEEC
T ss_pred CCccCccccccccccccCccCEEECCCCcccccccc-------ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeC
Confidence 887765543334566778888888888776653322 1357889999999998887655 56889999999999
Q ss_pred CCCccccCcCccccCCCCCCEEEccCCcCc-cccchhhhhhccchhhhccccCCCCCCcccccccccchhhhhccccccc
Q 038036 419 GSNQITGSIPGWLGNMPNLFYIDLSYNSIS-GEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLF 497 (638)
Q Consensus 419 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~ 497 (638)
++|.+.+..+..+..+++|++|++++|.+. +.+|..+..+++|+
T Consensus 429 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~----------------------------------- 473 (570)
T 2z63_A 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT----------------------------------- 473 (570)
T ss_dssp TTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC-----------------------------------
T ss_pred cCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCC-----------------------------------
Confidence 999999989999999999999999999997 57888888888876
Q ss_pred CCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCc
Q 038036 498 SLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPL 564 (638)
Q Consensus 498 ~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~ 564 (638)
.|++++|++++..|..+.++++|++|+|++|++++..|..|..+++|+.|++++|++++..|.
T Consensus 474 ----~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 474 ----FLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp ----EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred ----EEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 799999999988899999999999999999999988888899999999999999999987663
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.2e-45 Score=399.60 Aligned_cols=485 Identities=19% Similarity=0.182 Sum_probs=299.0
Q ss_pred CcCccceEECC------------CCCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEE
Q 038036 24 CCFWEGIKCDS------------KARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLD 91 (638)
Q Consensus 24 ~~~w~g~~c~~------------~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~ 91 (638)
.|.|.|+ |+. ..++++|++++|.+++..+.+++++++|++|++++|.++ .++...|..+++|++|+
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~ 80 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLD 80 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEE
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcC-ccChhhccccccCCEEE
Confidence 4778877 642 135666666666666555556666666666666666665 34444555666666666
Q ss_pred cCCccccccccHHHHhcCCCCcEEEcccCcCccc-CCCccccCCCCCCCcCEEEccCCcC-CccCCccCCCCCCCcEEEc
Q 038036 92 LSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGS-IPSFTSWNNKSLSSLKILDFSYNDF-SGQLPPGLGNCSKLQTFRA 169 (638)
Q Consensus 92 Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~~~~~~~~l~~L~~L~ls~n~i-~~~~~~~l~~l~~L~~L~l 169 (638)
|++|.+++ .+...+..+++|++|++++|.+.+. .+..+. ++++|++|++++|.+ ....+..+..+++|++|++
T Consensus 81 Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~----~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L 155 (549)
T 2z81_A 81 LSDNHLSS-LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP----NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEI 155 (549)
T ss_dssp CTTSCCCS-CCHHHHTTCTTCCEEECTTCCCSSSCSSCSCT----TCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEE
T ss_pred CCCCccCc-cCHHHhccCCCCcEEECCCCcccccchhhhhh----ccCCccEEECCCCccccccCHhhhhcccccCeeec
Confidence 66666663 3333345566666666666665532 222222 556666666666653 3222345566666666666
Q ss_pred ccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccC--C-cccCCCCCCCEEEccCCCC
Q 038036 170 GFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLI--P-QDIGKLTNLKSLQLHTNSL 246 (638)
Q Consensus 170 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~--~-~~l~~l~~L~~L~L~~n~i 246 (638)
++|.+.+..|..+..+++|++|++++|.+.......+..+++|++|++++|.+++.. + .....+++|+.|++++|.+
T Consensus 156 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l 235 (549)
T 2z81_A 156 KALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVL 235 (549)
T ss_dssp EETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEE
T ss_pred cCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceecccccc
Confidence 666666555666666666666666666554222222344566666666666655431 1 1122345556666665555
Q ss_pred CCCcch----hhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCccccc
Q 038036 247 SGFLPQ----SLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQ 322 (638)
Q Consensus 247 ~~~~~~----~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~ 322 (638)
++..+. .+..+++|+.+++++|.+.+...... .....+..+++++.+.+.++.+...
T Consensus 236 ~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~-------------------~~~~~~~~l~~L~~L~l~~~~i~~~ 296 (549)
T 2z81_A 236 TDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNP-------------------SESDVVSELGKVETVTIRRLHIPQF 296 (549)
T ss_dssp EHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCC-------------------CTTTCCCCCTTCCEEEEESCBCSCG
T ss_pred chhHHHHHHHHhhhhccccccccccccccccccccc-------------------cchhhhhhhcccccccccccccchh
Confidence 433222 22344555555555554432100000 0011223344555555555544321
Q ss_pred -----CchhhhcCCCCCEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCC
Q 038036 323 -----ISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDC 397 (638)
Q Consensus 323 -----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 397 (638)
++..+...++|+.|++++|.+..++..+ +..+++|+.|++++|.+.+..+... .....+++|++|++++|
T Consensus 297 ~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~---~~~~~l~~L~~L~Ls~N 371 (549)
T 2z81_A 297 YLFYDLSTVYSLLEKVKRITVENSKVFLVPCSF--SQHLKSLEFLDLSENLMVEEYLKNS---ACKGAWPSLQTLVLSQN 371 (549)
T ss_dssp GGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHH--HHHCTTCCEEECCSSCCCHHHHHHH---TCTTSSTTCCEEECTTS
T ss_pred hhcccchhhhhhcccceEEEeccCccccCCHHH--HhcCccccEEEccCCccccccccch---hhhhccccCcEEEccCC
Confidence 1222334456666666666666554321 2346667777777666654332110 01135688899999999
Q ss_pred cccccch--HHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhhccchhhhccccCCCCCC
Q 038036 398 EIKGQIP--TWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQL 475 (638)
Q Consensus 398 ~~~~~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~~~~~~~ 475 (638)
.+.+..+ ..+..+++|++|++++|+++ .+|..+..+++|++|++++|.+.. +|..+. ++|
T Consensus 372 ~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~~--~~L-------------- 433 (549)
T 2z81_A 372 HLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCIP--QTL-------------- 433 (549)
T ss_dssp CCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTSC--TTC--------------
T ss_pred cccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchhc--CCc--------------
Confidence 8876533 56889999999999999998 678888899999999999999873 332211 122
Q ss_pred cccccccccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCC
Q 038036 476 QLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSE 555 (638)
Q Consensus 476 ~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 555 (638)
+.|++++|++++.. ..+++|++|+|++|+++ .+|+ ...+++|+.|++++
T Consensus 434 -------------------------~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~ 482 (549)
T 2z81_A 434 -------------------------EVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISR 482 (549)
T ss_dssp -------------------------SEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCS
T ss_pred -------------------------eEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCC
Confidence 27999999998643 57899999999999998 6776 56799999999999
Q ss_pred CcceecCCccccccCCCCeEecccCceeecCCC
Q 038036 556 NNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPS 588 (638)
Q Consensus 556 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~ 588 (638)
|++++..|..+..+++|+.|++++|++.+..|.
T Consensus 483 N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 483 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp SCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred CccCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence 999988888899999999999999999987774
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=7.2e-45 Score=395.61 Aligned_cols=464 Identities=18% Similarity=0.150 Sum_probs=296.3
Q ss_pred eecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCc
Q 038036 86 HLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQ 165 (638)
Q Consensus 86 ~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~ 165 (638)
.|++|++++|++++..+. .+..+++|++|++++|++.+..+..+. .+++|++|++++|.+++..+..++.+++|+
T Consensus 27 ~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~----~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 101 (549)
T 2z81_A 27 AMKSLDLSFNKITYIGHG-DLRACANLQVLILKSSRINTIEGDAFY----SLGSLEHLDLSDNHLSSLSSSWFGPLSSLK 101 (549)
T ss_dssp TCCEEECCSSCCCEECSS-TTSSCTTCCEEECTTSCCCEECTTTTT----TCTTCCEEECTTSCCCSCCHHHHTTCTTCC
T ss_pred CccEEECcCCccCccChh-hhhcCCcccEEECCCCCcCccChhhcc----ccccCCEEECCCCccCccCHHHhccCCCCc
Confidence 344444444444422222 223344455555555544443333222 455555555555555544444455556666
Q ss_pred EEEcccccccc-cCCccccCCCCCCEEEccCCC-CccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccC
Q 038036 166 TFRAGFNYLSG-SIPDDISAATSLQEISLPGNQ-LSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHT 243 (638)
Q Consensus 166 ~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~ 243 (638)
+|++++|.+.+ ..|..+..+++|++|++++|. +....+..+..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus 102 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 181 (549)
T 2z81_A 102 YLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181 (549)
T ss_dssp EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred EEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEeccc
Confidence 66666665553 234455566666666666665 3322234566666666666666666666666666666666666666
Q ss_pred CCCCCCcchh-hcCCCCCcEEEccCccccccc--CcccccCCCCccEEecCCCccccccc----ccCcCCCCCCEEEcCC
Q 038036 244 NSLSGFLPQS-LMNCTNLITLNLRINNFRGDL--SAYNFSTLHNLHTIDLGNNNFTGSFP----LTLTSCKVLTAIRLSR 316 (638)
Q Consensus 244 n~i~~~~~~~-l~~l~~L~~L~L~~n~l~~~~--~~~~~~~~~~L~~L~l~~n~i~~~~~----~~l~~~~~L~~L~L~~ 316 (638)
|.+.. .+.. +..+++|+.|++++|.+.+.. +......+++|+.|++++|.+++..+ ..+..+++|+.+++++
T Consensus 182 n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~ 260 (549)
T 2z81_A 182 SESAF-LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD 260 (549)
T ss_dssp SBSTT-HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEES
T ss_pred Ccccc-cchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccc
Confidence 66653 3333 345667777777777665321 11123445677777777776665332 3345567777888877
Q ss_pred CcccccC------chhhhcCCCCCEEEccCCcCCCCccc---cccccCCCCCcEEEcCCCcccccCCcchhhhccccCCC
Q 038036 317 NKIVGQI------SPEILALESLSYLSITNNNFSNITGA---IRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQ 387 (638)
Q Consensus 317 n~i~~~~------~~~l~~l~~L~~L~L~~n~l~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 387 (638)
|.+.+.. ...+..+++++.|++.++.+...... .......++|+.+++++|.+. .+|.... ..++
T Consensus 261 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~-----~~l~ 334 (549)
T 2z81_A 261 CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFS-----QHLK 334 (549)
T ss_dssp CEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHH-----HHCT
T ss_pred ccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHH-----hcCc
Confidence 7765421 12345677888888888876543211 011233567888888887765 3443322 1467
Q ss_pred CccEEEeeCCcccccchHH---hhcCCCCCEEecCCCccccCcC--ccccCCCCCCEEEccCCcCccccchhhhhhccch
Q 038036 388 NLLVLGIGDCEIKGQIPTW---LARLKKLQVLDLGSNQITGSIP--GWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALA 462 (638)
Q Consensus 388 ~L~~L~l~~~~~~~~~~~~---l~~l~~L~~L~L~~n~l~~~~~--~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 462 (638)
+|++|++++|.+.+..|.. +..+++|++|++++|++++..+ ..+..+++|++|++++|+++ .+|..+..+++|+
T Consensus 335 ~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~ 413 (549)
T 2z81_A 335 SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMR 413 (549)
T ss_dssp TCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCC
T ss_pred cccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhccccccc
Confidence 8888888888887765433 5677888888888888875432 45777888888888888887 5666665555554
Q ss_pred hhhccccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhh
Q 038036 463 LQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQI 542 (638)
Q Consensus 463 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~ 542 (638)
.|++++|.++ .+|..+ .++|++|++++|++++..
T Consensus 414 ---------------------------------------~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~~---- 447 (549)
T 2z81_A 414 ---------------------------------------FLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSFS---- 447 (549)
T ss_dssp ---------------------------------------EEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCCC----
T ss_pred ---------------------------------------EEECCCCCcc-cccchh--cCCceEEECCCCChhhhc----
Confidence 6899999987 344433 268999999999998643
Q ss_pred hCCCCCCeeeCCCCcceecCCccccccCCCCeEecccCceeecCCCC-CcCCCcCCCccCCCCCCCCCC
Q 038036 543 SQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPSG-GQFLTFPSSSFEGNPRFCGDI 610 (638)
Q Consensus 543 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~~ 610 (638)
..+++|++|++++|+++ .+|. ...+++|+.|++++|++++.+|.. ..+.++..+.+++||+.|+.+
T Consensus 448 ~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 448 LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 57899999999999999 6776 567999999999999999877763 567888999999999999754
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.1e-44 Score=391.33 Aligned_cols=454 Identities=20% Similarity=0.225 Sum_probs=284.3
Q ss_pred EEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEEcc
Q 038036 39 THLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVS 118 (638)
Q Consensus 39 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls 118 (638)
+.|+++++.++ .+|..+. ++|++|++++|.++ .++...|..+++|++|+|++|++++..|. .+..+++|++|+++
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls 77 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDIS-VFKFNQELEYLDLS 77 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGG-GGTTCTTCCEEECC
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCccc-ccChhhccccccccEEecCCCccCCcChH-HhhcccCCCEEecC
Confidence 46778888877 4666555 78888888888877 45555677778888888888888744443 44567788888888
Q ss_pred cCcCcccCCCccccCCCCCCCcCEEEccCCcCCc-cCCccCCCCCCCcEEEcccccccccCCccccCCCCC--CEEEccC
Q 038036 119 HNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSG-QLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSL--QEISLPG 195 (638)
Q Consensus 119 ~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L--~~L~L~~ 195 (638)
+|+++. +|.. .+++|++|++++|.+++ .+|..++++++|++|++++|.+.+ ..+..+++| ++|++++
T Consensus 78 ~N~l~~-lp~~------~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~ 147 (520)
T 2z7x_B 78 HNKLVK-ISCH------PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVL 147 (520)
T ss_dssp SSCCCE-EECC------CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEE
T ss_pred CCceee-cCcc------ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeec
Confidence 887763 2222 46778888888887775 356777778888888888777764 345566666 7788877
Q ss_pred CCC--ccccCccccCCC-CCCEEEeecCcCcccCC-cccCCCCCCCEEEccCCC-------CCCCcchhhcCCCCCcEEE
Q 038036 196 NQL--SGAISDGVGNLT-SLSMLDLQSNKFSGLIP-QDIGKLTNLKSLQLHTNS-------LSGFLPQSLMNCTNLITLN 264 (638)
Q Consensus 196 n~i--~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~-------i~~~~~~~l~~l~~L~~L~ 264 (638)
|.+ .+..|..+..+. ....+++++|.+.+.++ ..+..+++|+.|++++|. +.+.++ .+..+++|+.|+
T Consensus 148 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~ 226 (520)
T 2z7x_B 148 GETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLT 226 (520)
T ss_dssp CTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEE
T ss_pred ccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcc
Confidence 777 556666665554 23345566666554433 245567777777777775 443333 566777777777
Q ss_pred ccCcccccccCcccc--cCCCCccEEecCCCcccccccccC-----cCCCCCCEEEcCCCcccccCc-hhhhcC---CCC
Q 038036 265 LRINNFRGDLSAYNF--STLHNLHTIDLGNNNFTGSFPLTL-----TSCKVLTAIRLSRNKIVGQIS-PEILAL---ESL 333 (638)
Q Consensus 265 L~~n~l~~~~~~~~~--~~~~~L~~L~l~~n~i~~~~~~~l-----~~~~~L~~L~L~~n~i~~~~~-~~l~~l---~~L 333 (638)
+++|.+.+....... ...++|+.|++++|.+++.+|..+ ..+++|+.+++++|.+ .+| ..+..+ .+|
T Consensus 227 l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L 304 (520)
T 2z7x_B 227 LNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNI 304 (520)
T ss_dssp EEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCC
T ss_pred ccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCce
Confidence 777766532211110 113467777777777776666666 6666777777777666 333 333333 556
Q ss_pred CEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchHHhhcCCCC
Q 038036 334 SYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKL 413 (638)
Q Consensus 334 ~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L 413 (638)
+.|++++|.+..+.. ... +++|++|++++|.+.+..|..+..+++|
T Consensus 305 ~~L~l~~n~l~~~~~----~~~------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 350 (520)
T 2z7x_B 305 KNFTVSGTRMVHMLC----PSK------------------------------ISPFLHLDFSNNLLTDTVFENCGHLTEL 350 (520)
T ss_dssp SEEEEESSCCCCCCC----CSS------------------------------CCCCCEEECCSSCCCTTTTTTCCCCSSC
T ss_pred eEEEcCCCccccccc----hhh------------------------------CCcccEEEeECCccChhhhhhhccCCCC
Confidence 667666666553321 123 3445555555555555455555555556
Q ss_pred CEEecCCCcccc--CcCccccCCCCCCEEEccCCcCccccchh-hhhhccchhhhccccCCCCCCcccccccccchhhhh
Q 038036 414 QVLDLGSNQITG--SIPGWLGNMPNLFYIDLSYNSISGEFPKE-FCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYN 490 (638)
Q Consensus 414 ~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 490 (638)
++|++++|++++ .+|..+..+++|++|++++|.+.+.+|.. +..+++|+
T Consensus 351 ~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~---------------------------- 402 (520)
T 2z7x_B 351 ETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL---------------------------- 402 (520)
T ss_dssp CEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCC----------------------------
T ss_pred CEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCC----------------------------
Confidence 666666655553 23344555556666666666555433332 33333333
Q ss_pred cccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCcc-cccc
Q 038036 491 QQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLS-IIDL 569 (638)
Q Consensus 491 ~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~-l~~l 569 (638)
.|++++|.+++..|..+. ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +..+
T Consensus 403 -----------~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l 467 (520)
T 2z7x_B 403 -----------SLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRL 467 (520)
T ss_dssp -----------EEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTC
T ss_pred -----------EEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccC
Confidence 455566665555554433 67788888888877 67777777888888888888887 44543 7777
Q ss_pred CCCCeEecccCceeecCC
Q 038036 570 HFLSSFSVANNDLQGQIP 587 (638)
Q Consensus 570 ~~L~~L~l~~n~l~~~~p 587 (638)
++|++|++++|++++..+
T Consensus 468 ~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 468 TSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp TTCCEEECCSSCBCCCHH
T ss_pred CcccEEECcCCCCcccCC
Confidence 888888888888775444
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4e-44 Score=386.83 Aligned_cols=464 Identities=19% Similarity=0.213 Sum_probs=308.4
Q ss_pred CEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCE
Q 038036 63 CHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKI 142 (638)
Q Consensus 63 ~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~ 142 (638)
++|++++|.++ .+|...+ ++|++|+|++|.+++ ++...+..+++|++|++++|++++..+..+. ++++|++
T Consensus 3 ~~l~ls~n~l~-~ip~~~~---~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~----~l~~L~~ 73 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS---QKTTILNISQNYISE-LWTSDILSLSKLRILIISHNRIQYLDISVFK----FNQELEY 73 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC---TTCSEEECCSSCCCC-CCHHHHTTCTTCCEEECCSSCCCEEEGGGGT----TCTTCCE
T ss_pred ceEecCCCCcc-ccccccc---ccccEEECCCCcccc-cChhhccccccccEEecCCCccCCcChHHhh----cccCCCE
Confidence 57888888888 6776543 678888888888884 4434456678888888888877765554444 6777777
Q ss_pred EEccCCcCCccCCccCCCCCCCcEEEcccccccc-cCCccccCCCCCCEEEccCCCCccccCccccCCCCC--CEEEeec
Q 038036 143 LDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSG-SIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSL--SMLDLQS 219 (638)
Q Consensus 143 L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L--~~L~l~~ 219 (638)
|++++|.++ .+|.. .+++|++|++++|.+.+ .+|..++.+++|++|++++|.+.+ ..+..+++| ++|++++
T Consensus 74 L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~ 147 (520)
T 2z7x_B 74 LDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVL 147 (520)
T ss_dssp EECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEE
T ss_pred EecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeec
Confidence 777777777 34444 67777777777777765 356667777777777777776654 234555555 7777777
Q ss_pred CcC--cccCCcccCCCC-CCCEEEccCCCCCCCcch-hhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCcc
Q 038036 220 NKF--SGLIPQDIGKLT-NLKSLQLHTNSLSGFLPQ-SLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNF 295 (638)
Q Consensus 220 n~l--~~~~~~~l~~l~-~L~~L~L~~n~i~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i 295 (638)
|.+ .+..|..+..+. +...+++++|.+.+..+. .+.++++|+.|++++|....... .+
T Consensus 148 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~------------------~~ 209 (520)
T 2z7x_B 148 GETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCS------------------YF 209 (520)
T ss_dssp CTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTH------------------HH
T ss_pred ccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccc------------------ee
Confidence 666 445454444433 122344444444432222 33444555555555543000000 03
Q ss_pred cccccccCcCCCCCCEEEcCCCcccccCchhhh---cCCCCCEEEccCCcCC-CCcccccc--ccCCCCCcEEEcCCCcc
Q 038036 296 TGSFPLTLTSCKVLTAIRLSRNKIVGQISPEIL---ALESLSYLSITNNNFS-NITGAIRI--LMGCKNLRMLLLCKKFF 369 (638)
Q Consensus 296 ~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~---~l~~L~~L~L~~n~l~-~~~~~~~~--~~~~~~L~~L~l~~~~~ 369 (638)
.+.++ .+..+++|+.|++++|.+.+..+..+. ..++|+.|++++|.+. .++..+.. ...++.|+.+++++|.+
T Consensus 210 ~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~ 288 (520)
T 2z7x_B 210 LSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF 288 (520)
T ss_dssp HHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC
T ss_pred ecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce
Confidence 32222 344444555555554444332111111 1235555555555544 23222110 14555666666666555
Q ss_pred cccCCcchhhhccccCCCCccEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCcc
Q 038036 370 HEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISG 449 (638)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~ 449 (638)
.+|....... ....+|+.|++++|.+.... ....+++|++|++++|.+++..|..+..+++|++|++++|.+.+
T Consensus 289 --~~p~~~~~~~--~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 362 (520)
T 2z7x_B 289 --GFPQSYIYEI--FSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKE 362 (520)
T ss_dssp --CSCTHHHHHH--HHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCB
T ss_pred --ecchhhhhcc--cccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCc
Confidence 3332111100 01246889999999876542 12678999999999999998889999999999999999999986
Q ss_pred --ccchhhhhhccchhhhccccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCch-hhhcCcCCCe
Q 038036 450 --EFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPI-EIGNLKFLHV 526 (638)
Q Consensus 450 --~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~-~l~~l~~L~~ 526 (638)
.+|..+..+++|+ .|++++|.+++.+|. .+..+++|++
T Consensus 363 l~~~~~~~~~l~~L~---------------------------------------~L~Ls~N~l~~~l~~~~~~~l~~L~~ 403 (520)
T 2z7x_B 363 LSKIAEMTTQMKSLQ---------------------------------------QLDISQNSVSYDEKKGDCSWTKSLLS 403 (520)
T ss_dssp HHHHHHHHTTCTTCC---------------------------------------EEECCSSCCBCCGGGCSCCCCTTCCE
T ss_pred cccchHHHhhCCCCC---------------------------------------EEECCCCcCCcccccchhccCccCCE
Confidence 5567788888776 799999999975666 4888999999
Q ss_pred eeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecccCceeecCCCC--CcCCCcCCCccCCCC
Q 038036 527 LDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPSG--GQFLTFPSSSFEGNP 604 (638)
Q Consensus 527 L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~--~~~~~l~~~~~~~n~ 604 (638)
|++++|.+++..|..+. ++|+.|++++|+++ .+|..+..+++|++|++++|+++ .+|.. ..+.++..+.+++||
T Consensus 404 L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 404 LNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp EECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred EECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCC
Confidence 99999999888777664 79999999999999 88888889999999999999999 57764 456788889999999
Q ss_pred CCCCC
Q 038036 605 RFCGD 609 (638)
Q Consensus 605 ~lc~~ 609 (638)
+.|+.
T Consensus 480 ~~c~c 484 (520)
T 2z7x_B 480 WDCSC 484 (520)
T ss_dssp BCCCH
T ss_pred CcccC
Confidence 99964
No 19
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.6e-42 Score=384.31 Aligned_cols=514 Identities=19% Similarity=0.156 Sum_probs=329.6
Q ss_pred CCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEE
Q 038036 36 ARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITL 115 (638)
Q Consensus 36 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L 115 (638)
..+++|+|++|.+++..+.+|+++++|++|+|++|+|+ .++.++|.++++|++|+|++|+++ .+|...+..+++|++|
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKL 129 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEE
Confidence 36677777777776655566777777777777777776 566666777777777777777776 4455556667777777
Q ss_pred EcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCc-cCCccCCCCCCCcEEEcccccccccCCccccCCCC----CCE
Q 038036 116 NVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSG-QLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATS----LQE 190 (638)
Q Consensus 116 ~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~----L~~ 190 (638)
++++|++++..+..+. ++++|++|++++|.+++ ..|..+..+++|++|++++|.+.+..+..+..+.+ ...
T Consensus 130 ~Ls~N~l~~l~~~~~~----~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~ 205 (635)
T 4g8a_A 130 VAVETNLASLENFPIG----HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 205 (635)
T ss_dssp ECTTSCCCCSTTCCCT----TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCE
T ss_pred ECCCCcCCCCChhhhh----cCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhh
Confidence 7777777654444333 66777777777777654 34566667777777777777776655555544433 235
Q ss_pred EEccCCCCccccCccccCCCCCCEEEeecCcCcc-cCCcccCCCCCCCEEEccCC------CCCCCcchhhcCCCCCcEE
Q 038036 191 ISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSG-LIPQDIGKLTNLKSLQLHTN------SLSGFLPQSLMNCTNLITL 263 (638)
Q Consensus 191 L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n------~i~~~~~~~l~~l~~L~~L 263 (638)
++++.|.+....+..+ ....++.+++.+|.... ..+..+..+..++...+..+ .+.......+..+..+...
T Consensus 206 ~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 284 (635)
T 4g8a_A 206 LDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 284 (635)
T ss_dssp EECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEE
T ss_pred hhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhh
Confidence 6666666664433333 33345566666654331 11223444555554444322 1122222333444444444
Q ss_pred EccCcccccc--cCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCC
Q 038036 264 NLRINNFRGD--LSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNN 341 (638)
Q Consensus 264 ~L~~n~l~~~--~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n 341 (638)
.+..+..... .....+....+++.+++.++.+.... .+..+..++.|++.+|.+..... ..+..|+.+++..|
T Consensus 285 ~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n 359 (635)
T 4g8a_A 285 EFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSN 359 (635)
T ss_dssp EEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESC
T ss_pred hhhhhhhcccccchhhhhhhhccccccccccccccccc--ccccchhhhhhhcccccccCcCc---ccchhhhhcccccc
Confidence 4443322110 01113444556677777766665322 24455677777777777654332 23566777777777
Q ss_pred cCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchHHhhcCCCCCEEecCCC
Q 038036 342 NFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSN 421 (638)
Q Consensus 342 ~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n 421 (638)
....... ...+++|+.++++.|.+......... .....+|+.+++..+..... +..+..+++|+.+++.++
T Consensus 360 ~~~~~~~----~~~l~~L~~L~ls~n~l~~~~~~~~~----~~~~~~L~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~ 430 (635)
T 4g8a_A 360 KGGNAFS----EVDLPSLEFLDLSRNGLSFKGCCSQS----DFGTISLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHS 430 (635)
T ss_dssp CSCCBCC----CCBCTTCCEEECCSSCCBEEEECCHH----HHSCSCCCEEECCSCSEEEE-CSCCTTCTTCCEEECTTS
T ss_pred cCCCCcc----cccccccccchhhccccccccccccc----hhhhhhhhhhhccccccccc-cccccccccccchhhhhc
Confidence 6554322 33567777777777766432211111 12456777777777766543 334666777888888777
Q ss_pred ccccCcC-ccccCCCCCCEEEccCCcCccccchhhhhhccchhhhccccCCCCCCcccccccccchhhhhcccccccCCC
Q 038036 422 QITGSIP-GWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLP 500 (638)
Q Consensus 422 ~l~~~~~-~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~ 500 (638)
......+ ..+..+++++.+++++|.+.+..+..+..++.++
T Consensus 431 ~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~-------------------------------------- 472 (635)
T 4g8a_A 431 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE-------------------------------------- 472 (635)
T ss_dssp EEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC--------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccchhhh--------------------------------------
Confidence 6654433 4566777888888888887777776666666665
Q ss_pred CeEEccCCcc-cccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEeccc
Q 038036 501 PAIYLRNNSL-NGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVAN 579 (638)
Q Consensus 501 ~~L~ls~n~l-~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~ 579 (638)
.|++++|.+ .+..|..+..+++|++|+|++|++++..|..|..+++|++|+|++|++++..|..|..+++|++|+|++
T Consensus 473 -~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~ 551 (635)
T 4g8a_A 473 -VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 551 (635)
T ss_dssp -EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTT
T ss_pred -hhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCC
Confidence 688888874 445677888899999999999999988888899999999999999999988888899999999999999
Q ss_pred CceeecCCCCCc--CCCcCCCccCCCCCCCCC
Q 038036 580 NDLQGQIPSGGQ--FLTFPSSSFEGNPRFCGD 609 (638)
Q Consensus 580 n~l~~~~p~~~~--~~~l~~~~~~~n~~lc~~ 609 (638)
|++++..|.... +.++..+.+++||+.|+.
T Consensus 552 N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 552 NHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 583 (635)
T ss_dssp SCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred CcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence 999988776532 357888889999999974
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.3e-43 Score=386.77 Aligned_cols=358 Identities=22% Similarity=0.299 Sum_probs=240.7
Q ss_pred CCCccccCccccCCCCCCEEEeecCcCccc-----------------CCcccC--CCCCCCEEEccCCCCCCCcchhhcC
Q 038036 196 NQLSGAISDGVGNLTSLSMLDLQSNKFSGL-----------------IPQDIG--KLTNLKSLQLHTNSLSGFLPQSLMN 256 (638)
Q Consensus 196 n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~-----------------~~~~l~--~l~~L~~L~L~~n~i~~~~~~~l~~ 256 (638)
|.+++ +|..++++++|++|++++|.+++. +|..++ .+++|++|++++|.+.+.+|..+.+
T Consensus 193 n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 271 (636)
T 4eco_A 193 NNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271 (636)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred CCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence 34443 444555555555555555555542 444544 5555555555555555555555555
Q ss_pred CCCCcEEEccCcc-ccc-ccCcccccCC------CCccEEecCCCcccccccc--cCcCCCCCCEEEcCCCcccccCchh
Q 038036 257 CTNLITLNLRINN-FRG-DLSAYNFSTL------HNLHTIDLGNNNFTGSFPL--TLTSCKVLTAIRLSRNKIVGQISPE 326 (638)
Q Consensus 257 l~~L~~L~L~~n~-l~~-~~~~~~~~~~------~~L~~L~l~~n~i~~~~~~--~l~~~~~L~~L~L~~n~i~~~~~~~ 326 (638)
+++|+.|++++|. +.+ .++. .+..+ ++|+.|++++|.++ .+|. .+..+++|++|++++|.+.+.+| .
T Consensus 272 l~~L~~L~Ls~n~~l~~~~lp~-~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~ 348 (636)
T 4eco_A 272 LPEMQLINVACNRGISGEQLKD-DWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-A 348 (636)
T ss_dssp CSSCCEEECTTCTTSCHHHHHH-HHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-C
T ss_pred CCCCCEEECcCCCCCccccchH-HHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-h
Confidence 5555555555554 443 3332 22222 45555555555555 4444 45555555555555555554444 4
Q ss_pred hhcCCCCCEEEccCCcCCCCccccccccCCCC-CcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchH
Q 038036 327 ILALESLSYLSITNNNFSNITGAIRILMGCKN-LRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPT 405 (638)
Q Consensus 327 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 405 (638)
+..+++|+.|++++|.++.++.. +..+++ |+.|++++|.+. .+|.... ...+++|++|++++|.+.+..|.
T Consensus 349 ~~~l~~L~~L~L~~N~l~~lp~~---l~~l~~~L~~L~Ls~N~l~-~lp~~~~----~~~l~~L~~L~Ls~N~l~~~~p~ 420 (636)
T 4eco_A 349 FGSEIKLASLNLAYNQITEIPAN---FCGFTEQVENLSFAHNKLK-YIPNIFD----AKSVSVMSAIDFSYNEIGSVDGK 420 (636)
T ss_dssp CEEEEEESEEECCSSEEEECCTT---SEEECTTCCEEECCSSCCS-SCCSCCC----TTCSSCEEEEECCSSCTTTTTTC
T ss_pred hCCCCCCCEEECCCCccccccHh---hhhhcccCcEEEccCCcCc-ccchhhh----hcccCccCEEECcCCcCCCcchh
Confidence 55555555555555555533322 334444 555555555554 2332111 11345789999999999888888
Q ss_pred Hhh-------cCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhh-hhhc-------cchhhhccccC
Q 038036 406 WLA-------RLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEF-CGLR-------ALALQEVKNRA 470 (638)
Q Consensus 406 ~l~-------~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~-~~l~-------~L~~l~~~~~~ 470 (638)
.+. .+++|++|++++|.++...+..+..+++|++|++++|.++ .+|... .... +|+
T Consensus 421 ~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~-------- 491 (636)
T 4eco_A 421 NFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLT-------- 491 (636)
T ss_dssp SSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCC--------
T ss_pred hhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCcc--------
Confidence 787 7889999999999999655556778999999999999998 555432 2211 333
Q ss_pred CCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCchhhh--cCcCCCeeeCCCCeeeecCChhhhCCCCC
Q 038036 471 DGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIG--NLKFLHVLDLSLNNFSGEIPDQISQLTNL 548 (638)
Q Consensus 471 ~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~--~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 548 (638)
.|++++|.++ .+|..+. .+++|++|+|++|++++ +|..+..+++|
T Consensus 492 -------------------------------~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L 538 (636)
T 4eco_A 492 -------------------------------SIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTL 538 (636)
T ss_dssp -------------------------------EEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSC
T ss_pred -------------------------------EEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCC
Confidence 7999999999 7888886 99999999999999996 89999999999
Q ss_pred CeeeC------CCCcceecCCccccccCCCCeEecccCceeecCCCCCcCCCcCCCccCCCCCCCCC
Q 038036 549 EGLDL------SENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPSGGQFLTFPSSSFEGNPRFCGD 609 (638)
Q Consensus 549 ~~L~L------s~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~n~~lc~~ 609 (638)
+.|++ ++|++.+.+|..+..+++|++|++++|++ +.+|.... .++..+.+++|+..|-+
T Consensus 539 ~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~-~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 539 KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT-PNISVLDIKDNPNISID 603 (636)
T ss_dssp CEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-TTCCEEECCSCTTCEEE
T ss_pred CEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh-CcCCEEECcCCCCcccc
Confidence 99999 56888899999999999999999999999 78998643 78999999999998843
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.6e-43 Score=390.70 Aligned_cols=384 Identities=17% Similarity=0.193 Sum_probs=283.1
Q ss_pred ccccccCCccccCCCCCCEEEccCCCCcc-----------------ccCcccc--CCCCCCEEEeecCcCcccCCcccCC
Q 038036 172 NYLSGSIPDDISAATSLQEISLPGNQLSG-----------------AISDGVG--NLTSLSMLDLQSNKFSGLIPQDIGK 232 (638)
Q Consensus 172 n~~~~~~~~~~~~l~~L~~L~L~~n~i~~-----------------~~~~~l~--~l~~L~~L~l~~n~l~~~~~~~l~~ 232 (638)
|.+++ +|..+.++++|++|++++|.+++ .+|..++ ++++|++|++++|.+.+.+|..+..
T Consensus 435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~ 513 (876)
T 4ecn_A 435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513 (876)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence 55665 66677777777777777777775 2666666 7777888888777777777777777
Q ss_pred CCCCCEEEccCCC-CCC-CcchhhcCCC-------CCcEEEccCcccccccCc-ccccCCCCccEEecCCCccccccccc
Q 038036 233 LTNLKSLQLHTNS-LSG-FLPQSLMNCT-------NLITLNLRINNFRGDLSA-YNFSTLHNLHTIDLGNNNFTGSFPLT 302 (638)
Q Consensus 233 l~~L~~L~L~~n~-i~~-~~~~~l~~l~-------~L~~L~L~~n~l~~~~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~ 302 (638)
+++|++|++++|+ +++ .+|..+.+++ +|+.|++++|.+. .++. ..+..+++|+.|++++|.++ .+| .
T Consensus 514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~ 590 (876)
T 4ecn_A 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-A 590 (876)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-C
T ss_pred CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-h
Confidence 7788888888776 665 5666555444 7888888888777 5553 25677778888888888777 666 7
Q ss_pred CcCCCCCCEEEcCCCcccccCchhhhcCCC-CCEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhc
Q 038036 303 LTSCKVLTAIRLSRNKIVGQISPEILALES-LSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAI 381 (638)
Q Consensus 303 l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 381 (638)
+..+++|+.|++++|.+. .+|..+..+++ |+.|++++|.+..++..+. ....++|+.|++++|.+.+..+... ...
T Consensus 591 ~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~-~~~~~~L~~L~Ls~N~l~g~ip~l~-~~l 667 (876)
T 4ecn_A 591 FGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFN-AKSVYVMGSVDFSYNKIGSEGRNIS-CSM 667 (876)
T ss_dssp CCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCC-TTCSSCEEEEECCSSCTTTTSSSCS-SCT
T ss_pred hcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhh-ccccCCCCEEECcCCcCCCccccch-hhh
Confidence 777778888888888777 66777777777 8888888887776653221 1223448888888887766544321 111
Q ss_pred cccCCCCccEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCccc-cC-------CCCCCEEEccCCcCccccch
Q 038036 382 SSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWL-GN-------MPNLFYIDLSYNSISGEFPK 453 (638)
Q Consensus 382 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l-~~-------l~~L~~L~L~~n~i~~~~~~ 453 (638)
.....++|+.|++++|.+....+..+..+++|+.|+|++|.+. .+|..+ .. +++|+.|+|++|++. .+|.
T Consensus 668 ~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~ 745 (876)
T 4ecn_A 668 DDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSD 745 (876)
T ss_dssp TTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCG
T ss_pred ccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchH
Confidence 1123458999999999999555555668999999999999999 555433 32 239999999999998 7787
Q ss_pred hhh--hhccchhhhccccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCC
Q 038036 454 EFC--GLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSL 531 (638)
Q Consensus 454 ~~~--~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~ 531 (638)
.+. .+++|+ .|++++|.+++ +|..+.++++|+.|+|++
T Consensus 746 ~l~~~~l~~L~---------------------------------------~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 746 DFRATTLPYLS---------------------------------------NMDVSYNCFSS-FPTQPLNSSQLKAFGIRH 785 (876)
T ss_dssp GGSTTTCTTCC---------------------------------------EEECCSSCCSS-CCCGGGGCTTCCEEECCC
T ss_pred HhhhccCCCcC---------------------------------------EEEeCCCCCCc-cchhhhcCCCCCEEECCC
Confidence 776 777776 69999999996 788999999999999977
Q ss_pred ------CeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecccCceeecCCCCCc-CCCcCCCccCCCC
Q 038036 532 ------NNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPSGGQ-FLTFPSSSFEGNP 604 (638)
Q Consensus 532 ------n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~-~~~l~~~~~~~n~ 604 (638)
|.+.+.+|..|..+++|+.|+|++|++ +.+|..+. ++|+.|+|++|++...-+.... ........+.+|+
T Consensus 786 N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~ 862 (876)
T 4ecn_A 786 QRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK 862 (876)
T ss_dssp CBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCT
T ss_pred CCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCC
Confidence 778889999999999999999999999 58888766 6999999999999855443321 1123345566665
Q ss_pred CCC
Q 038036 605 RFC 607 (638)
Q Consensus 605 ~lc 607 (638)
..+
T Consensus 863 ~~~ 865 (876)
T 4ecn_A 863 TQD 865 (876)
T ss_dssp TSE
T ss_pred ccc
Confidence 433
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.1e-41 Score=370.90 Aligned_cols=457 Identities=22% Similarity=0.239 Sum_probs=302.7
Q ss_pred CeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEE
Q 038036 37 RVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLN 116 (638)
Q Consensus 37 ~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~ 116 (638)
..+.++++++++++ +|..+. ++|++|++++|.++ .++...|..+++|++|+|++|.+++..| ..+..+++|++|+
T Consensus 32 ~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~ 106 (562)
T 3a79_B 32 LESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDF-HVFLFNQDLEYLD 106 (562)
T ss_dssp -CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECT-TTTTTCTTCCEEE
T ss_pred CCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCH-HHhCCCCCCCEEE
Confidence 34888999998875 666554 78999999999988 5666778888889999999998885444 3456688899999
Q ss_pred cccCcCcccCCCccccCCCCCCCcCEEEccCCcCCc-cCCccCCCCCCCcEEEcccccccccCCccccCCCCC--CEEEc
Q 038036 117 VSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSG-QLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSL--QEISL 193 (638)
Q Consensus 117 Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L--~~L~L 193 (638)
+++|+++. +|.. .+++|++|++++|.+++ ..|..++++++|++|++++|.+... .+..+++| ++|++
T Consensus 107 Ls~N~l~~-lp~~------~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L 176 (562)
T 3a79_B 107 VSHNRLQN-ISCC------PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILL 176 (562)
T ss_dssp CTTSCCCE-ECSC------CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEE
T ss_pred CCCCcCCc-cCcc------ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEe
Confidence 99888873 3332 47888888888888875 3457888888888888888887743 34455555 88888
Q ss_pred cCCCC--ccccCccccCCC--CCCEEEeecCcCcccCCc-ccCCCCCCCEEEccCCCCC----CCcchhhcCCCCCcEEE
Q 038036 194 PGNQL--SGAISDGVGNLT--SLSMLDLQSNKFSGLIPQ-DIGKLTNLKSLQLHTNSLS----GFLPQSLMNCTNLITLN 264 (638)
Q Consensus 194 ~~n~i--~~~~~~~l~~l~--~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~L~~n~i~----~~~~~~l~~l~~L~~L~ 264 (638)
++|.+ .+..|..+..+. .+ .+++++|.+.+.++. .+..+++|+.+++++|+.. ......+..++.|+.++
T Consensus 177 ~~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~ 255 (562)
T 3a79_B 177 DLVSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVT 255 (562)
T ss_dssp EESSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEE
T ss_pred ecccccccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEE
Confidence 88888 666676666554 22 456677776654433 3556778888888887521 01233567778888888
Q ss_pred ccCcccccccCcc--cccCCCCccEEecCCCcccccccccC-----cCCCCCCEEEcCCCcccccCc-hhhh---cCCCC
Q 038036 265 LRINNFRGDLSAY--NFSTLHNLHTIDLGNNNFTGSFPLTL-----TSCKVLTAIRLSRNKIVGQIS-PEIL---ALESL 333 (638)
Q Consensus 265 L~~n~l~~~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~l-----~~~~~L~~L~L~~n~i~~~~~-~~l~---~l~~L 333 (638)
++++.+.+..... .....++|++|++++|.+++.+|..+ ..++.|+.+++..+.+ .+| ..+. ...+|
T Consensus 256 L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L 333 (562)
T 3a79_B 256 LQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNI 333 (562)
T ss_dssp EEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCC
T ss_pred ecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcc
Confidence 7777654311100 11123478888888888776677665 4455555555555554 222 2222 22556
Q ss_pred CEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchHHhhcCCCC
Q 038036 334 SYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKL 413 (638)
Q Consensus 334 ~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L 413 (638)
+.|++++|.+..+.. .. .+++|++|++++|.+.+..|..+..+++|
T Consensus 334 ~~L~l~~n~~~~~~~----~~------------------------------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 379 (562)
T 3a79_B 334 KMLSISDTPFIHMVC----PP------------------------------SPSSFTFLNFTQNVFTDSVFQGCSTLKRL 379 (562)
T ss_dssp SEEEEESSCCCCCCC----CS------------------------------SCCCCCEEECCSSCCCTTTTTTCCSCSSC
T ss_pred eEEEccCCCcccccC----cc------------------------------CCCCceEEECCCCccccchhhhhcccCCC
Confidence 777777666543221 12 34556666666666665556666666666
Q ss_pred CEEecCCCccccC--cCccccCCCCCCEEEccCCcCccccch-hhhhhccchhhhccccCCCCCCcccccccccchhhhh
Q 038036 414 QVLDLGSNQITGS--IPGWLGNMPNLFYIDLSYNSISGEFPK-EFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYN 490 (638)
Q Consensus 414 ~~L~L~~n~l~~~--~~~~l~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 490 (638)
++|++++|++++. .|..+..+++|++|++++|.+.+.+|. .+..+++|+
T Consensus 380 ~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~---------------------------- 431 (562)
T 3a79_B 380 QTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESIL---------------------------- 431 (562)
T ss_dssp CEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCC----------------------------
T ss_pred CEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCC----------------------------
Confidence 6666666666642 234456666666666666666653333 244444443
Q ss_pred cccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCcc-cccc
Q 038036 491 QQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLS-IIDL 569 (638)
Q Consensus 491 ~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~-l~~l 569 (638)
.|++++|.+++..|..+. ++|++|+|++|+++ .+|..+..+++|+.|++++|+++ .+|.. +..+
T Consensus 432 -----------~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l 496 (562)
T 3a79_B 432 -----------VLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRL 496 (562)
T ss_dssp -----------EEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTC
T ss_pred -----------EEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcC
Confidence 566666666655554333 67888888888887 67777778888888888888888 45554 8888
Q ss_pred CCCCeEecccCceeecCCC
Q 038036 570 HFLSSFSVANNDLQGQIPS 588 (638)
Q Consensus 570 ~~L~~L~l~~n~l~~~~p~ 588 (638)
++|+.|++++|++.+..|.
T Consensus 497 ~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 497 TSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp TTCCCEECCSCCBCCCHHH
T ss_pred CCCCEEEecCCCcCCCcch
Confidence 8888888888888865553
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=9.5e-41 Score=363.37 Aligned_cols=461 Identities=20% Similarity=0.203 Sum_probs=286.1
Q ss_pred CCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCC
Q 038036 59 LTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLS 138 (638)
Q Consensus 59 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~ 138 (638)
+...+++++++|.++ .+|...+ +.|++|++++|.+++ ++...+..+++|++|++++|++++..+..+. .++
T Consensus 30 ~~~~~~l~ls~~~L~-~ip~~~~---~~L~~L~Ls~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~----~l~ 100 (562)
T 3a79_B 30 NELESMVDYSNRNLT-HVPKDLP---PRTKALSLSQNSISE-LRMPDISFLSELRVLRLSHNRIRSLDFHVFL----FNQ 100 (562)
T ss_dssp ---CCEEECTTSCCC-SCCTTSC---TTCCEEECCSSCCCC-CCGGGTTTCTTCCEEECCSCCCCEECTTTTT----TCT
T ss_pred cCCCcEEEcCCCCCc-cCCCCCC---CCcCEEECCCCCccc-cChhhhccCCCccEEECCCCCCCcCCHHHhC----CCC
Confidence 344477888888887 5776542 567777777777773 3333445566677777777666655554433 566
Q ss_pred CcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccc-cCCccccCCCCCCEEEccCCCCccccCccccCCCCC--CEE
Q 038036 139 SLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSG-SIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSL--SML 215 (638)
Q Consensus 139 ~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L--~~L 215 (638)
+|++|++++|.++ .+|.. .+++|++|++++|.+.+ ..|..|.++++|++|++++|.+... .+..+++| ++|
T Consensus 101 ~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L 174 (562)
T 3a79_B 101 DLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCI 174 (562)
T ss_dssp TCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEE
T ss_pred CCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEE
Confidence 6666666666666 34443 56666666666666654 2345566666666666666665532 23333333 666
Q ss_pred EeecCcC--cccCCcccCCCC-CCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCC
Q 038036 216 DLQSNKF--SGLIPQDIGKLT-NLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGN 292 (638)
Q Consensus 216 ~l~~n~l--~~~~~~~l~~l~-~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~ 292 (638)
++++|.+ ++..|..+..+. ..-.+++++|.+.+ .++...+..+++|+.+++++
T Consensus 175 ~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~------------------------~~~~~~~~~l~~L~~L~l~~ 230 (562)
T 3a79_B 175 LLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFS------------------------VQVNMSVNALGHLQLSNIKL 230 (562)
T ss_dssp EEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCC------------------------CCCEEEESSEEEEEEEEEEC
T ss_pred EeecccccccccCcccccccCcceEEEEecCccchh------------------------hhhhhcccccceEEEecccc
Confidence 6666655 444444444332 01133444444443 33333333444444444444
Q ss_pred Cc-----ccccccccCcCCCCCCEEEcCCCcccccC----chhhhcCCCCCEEEccCCcCC-CCcccccc--ccCCCCCc
Q 038036 293 NN-----FTGSFPLTLTSCKVLTAIRLSRNKIVGQI----SPEILALESLSYLSITNNNFS-NITGAIRI--LMGCKNLR 360 (638)
Q Consensus 293 n~-----i~~~~~~~l~~~~~L~~L~L~~n~i~~~~----~~~l~~l~~L~~L~L~~n~l~-~~~~~~~~--~~~~~~L~ 360 (638)
|. +. .....+..++.|+.+++.++.+.+.. +.. ...++|++|++++|.+. .++..+.. ...++.|+
T Consensus 231 n~~~~~~l~-~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~ 308 (562)
T 3a79_B 231 NDENCQRLM-TFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLM 308 (562)
T ss_dssp CSTTHHHHH-HHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEE
T ss_pred cccccchHH-HHHHHHhccCcceEEEecCCcCcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchhee
Confidence 32 11 11122334444444444444333211 111 12235555555555554 23322110 12333333
Q ss_pred EEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEE
Q 038036 361 MLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYI 440 (638)
Q Consensus 361 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 440 (638)
.+++..+.+ .+|....... ....++++|++++|.+.... ....+++|++|++++|.+++..|..+..+++|++|
T Consensus 309 ~~~~~~~~~--~~p~~~~~~~--~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 382 (562)
T 3a79_B 309 IEHVKNQVF--LFSKEALYSV--FAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTL 382 (562)
T ss_dssp EEEEEECCC--SSCHHHHHHH--HHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEE
T ss_pred hhhccccee--ecChhhhhhh--hccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEE
Confidence 444443333 2222111100 01256899999999876432 12678999999999999998889999999999999
Q ss_pred EccCCcCccc--cchhhhhhccchhhhccccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCch-h
Q 038036 441 DLSYNSISGE--FPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPI-E 517 (638)
Q Consensus 441 ~L~~n~i~~~--~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~-~ 517 (638)
++++|.+.+. +|..+.++++|+ .|++++|.+++.+|. .
T Consensus 383 ~L~~N~l~~~~~~~~~~~~l~~L~---------------------------------------~L~l~~N~l~~~~~~~~ 423 (562)
T 3a79_B 383 ILQRNGLKNFFKVALMTKNMSSLE---------------------------------------TLDVSLNSLNSHAYDRT 423 (562)
T ss_dssp ECCSSCCCBTTHHHHTTTTCTTCC---------------------------------------EEECTTSCCBSCCSSCC
T ss_pred ECCCCCcCCcccchhhhcCCCCCC---------------------------------------EEECCCCcCCCccChhh
Confidence 9999999863 345677777776 799999999975655 5
Q ss_pred hhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecccCceeecCCCC--CcCCCc
Q 038036 518 IGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPSG--GQFLTF 595 (638)
Q Consensus 518 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~--~~~~~l 595 (638)
+..+++|++|++++|++++..|..+. ++|+.|++++|+++ .+|..+..+++|++|++++|+++ .+|.. ..+.++
T Consensus 424 ~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L 499 (562)
T 3a79_B 424 CAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSL 499 (562)
T ss_dssp CCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTC
T ss_pred hcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCC
Confidence 88999999999999999877766554 79999999999999 78877779999999999999999 67764 457788
Q ss_pred CCCccCCCCCCCCC
Q 038036 596 PSSSFEGNPRFCGD 609 (638)
Q Consensus 596 ~~~~~~~n~~lc~~ 609 (638)
..+.+++||+.|+.
T Consensus 500 ~~L~l~~N~~~c~c 513 (562)
T 3a79_B 500 QYIWLHDNPWDCTC 513 (562)
T ss_dssp CCEECCSCCBCCCH
T ss_pred CEEEecCCCcCCCc
Confidence 88999999999963
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.7e-38 Score=336.97 Aligned_cols=383 Identities=19% Similarity=0.195 Sum_probs=272.4
Q ss_pred cEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccC-CccccCCCCCCEE
Q 038036 113 ITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSI-PDDISAATSLQEI 191 (638)
Q Consensus 113 ~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L 191 (638)
+.++.+++.++. +|.+ .++|++|++++|.+++..|..+.++++|++|++++|.+.+.+ +..|..+++|++|
T Consensus 13 ~~~~c~~~~l~~-lp~l-------~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L 84 (455)
T 3v47_A 13 YNAICINRGLHQ-VPEL-------PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIIL 84 (455)
T ss_dssp TEEECCSSCCSS-CCCC-------CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEE
T ss_pred cccCcCCCCccc-CCCC-------CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEE
Confidence 456666666653 3331 267888888888888777788888888888888888776444 4567788888888
Q ss_pred EccCCCCccccCccccCCCCCCEEEeecCcCcccCCcc--cCCCCCCCEEEccCCCCCCCcchh-hcCCCCCcEEEccCc
Q 038036 192 SLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQD--IGKLTNLKSLQLHTNSLSGFLPQS-LMNCTNLITLNLRIN 268 (638)
Q Consensus 192 ~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~--l~~l~~L~~L~L~~n~i~~~~~~~-l~~l~~L~~L~L~~n 268 (638)
++++|.+.+..|..+..+++|++|++++|.+++..+.. +..+++|++|++++|.+++..|.. +.++++|+.|++++|
T Consensus 85 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n 164 (455)
T 3v47_A 85 KLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN 164 (455)
T ss_dssp ECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTC
T ss_pred eCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCC
Confidence 88888888777778888888888888888887644433 777888888888888887666655 777888888888888
Q ss_pred ccccccCcccccCC--CCccEEecCCCccccccccc--------CcCCCCCCEEEcCCCcccccCchhhhcC---CCCCE
Q 038036 269 NFRGDLSAYNFSTL--HNLHTIDLGNNNFTGSFPLT--------LTSCKVLTAIRLSRNKIVGQISPEILAL---ESLSY 335 (638)
Q Consensus 269 ~l~~~~~~~~~~~~--~~L~~L~l~~n~i~~~~~~~--------l~~~~~L~~L~L~~n~i~~~~~~~l~~l---~~L~~ 335 (638)
.+.+..+ ..+..+ .+|+.|++++|.+.+..+.. +..+++|++|++++|.+.+..+..+... ++|+.
T Consensus 165 ~l~~~~~-~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~ 243 (455)
T 3v47_A 165 KVKSICE-EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQS 243 (455)
T ss_dssp CBSCCCT-TTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEE
T ss_pred cccccCh-hhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceee
Confidence 8774333 234433 57788888888777543332 2245667777777777776666555433 56666
Q ss_pred EEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchHHhh--cCCCC
Q 038036 336 LSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLA--RLKKL 413 (638)
Q Consensus 336 L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~--~l~~L 413 (638)
|++++|........ .+ .+....+..+. ..++|
T Consensus 244 L~l~~~~~~~~~~~----------------~~------------------------------~~~~~~~~~~~~~~~~~L 277 (455)
T 3v47_A 244 LILSNSYNMGSSFG----------------HT------------------------------NFKDPDNFTFKGLEASGV 277 (455)
T ss_dssp EECTTCTTTSCCTT----------------CC------------------------------SSCCCCTTTTGGGTTSCC
T ss_pred Eeeccccccccccc----------------hh------------------------------hhccCcccccccccccCc
Confidence 66666654321100 00 00000001111 23567
Q ss_pred CEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhhccchhhhccccCCCCCCcccccccccchhhhhccc
Q 038036 414 QVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQY 493 (638)
Q Consensus 414 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 493 (638)
++|++++|.+.+..+..+..+++|++|++++|.+.+..|..|.++++|+
T Consensus 278 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~------------------------------- 326 (455)
T 3v47_A 278 KTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLL------------------------------- 326 (455)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC-------------------------------
T ss_pred eEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCC-------------------------------
Confidence 7777777777766666677777777777777777766666666666665
Q ss_pred ccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCC
Q 038036 494 NKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLS 573 (638)
Q Consensus 494 ~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 573 (638)
.|++++|.+++..|..+.++++|++|+|++|.+++..|..|..+++|++|++++|++++..+..+..+++|+
T Consensus 327 --------~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 398 (455)
T 3v47_A 327 --------KLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQ 398 (455)
T ss_dssp --------EEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred --------EEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCccc
Confidence 577777777767777888899999999999999988899999999999999999999976667788999999
Q ss_pred eEecccCceeecCCCC
Q 038036 574 SFSVANNDLQGQIPSG 589 (638)
Q Consensus 574 ~L~l~~n~l~~~~p~~ 589 (638)
+|++++|++++..|..
T Consensus 399 ~L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 399 KIWLHTNPWDCSCPRI 414 (455)
T ss_dssp EEECCSSCBCCCTTTT
T ss_pred EEEccCCCcccCCCcc
Confidence 9999999999888854
No 25
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.2e-38 Score=349.79 Aligned_cols=500 Identities=19% Similarity=0.176 Sum_probs=386.3
Q ss_pred EECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEEcccC
Q 038036 41 LWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHN 120 (638)
Q Consensus 41 L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n 120 (638)
.+.++.+++ .+|+.+. +++++|||++|.|+ .++...|.++++|++|+|++|.|+ .++...|..+++|++|+|++|
T Consensus 36 ~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N 110 (635)
T 4g8a_A 36 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 110 (635)
T ss_dssp EECTTSCCS-SCCSSSC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTC
T ss_pred EECCCCCcC-ccCCCCC--cCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCC
Confidence 455555665 4666553 58999999999998 788888999999999999999999 566667788999999999999
Q ss_pred cCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccc-cCCccccCCCCCCEEEccCCCCc
Q 038036 121 MFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSG-SIPDDISAATSLQEISLPGNQLS 199 (638)
Q Consensus 121 ~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~i~ 199 (638)
++++..+..+. ++++|++|++++|.+++..+..|+++++|++|++++|.+.. ..|..+..+++|++|++++|.+.
T Consensus 111 ~l~~l~~~~f~----~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 111 PIQSLALGAFS----GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp CCCEECGGGGT----TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred cCCCCCHHHhc----CCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence 99876655554 89999999999999997777789999999999999999875 35778899999999999999999
Q ss_pred cccCccccCCCCC----CEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCC-CcchhhcCCCCCcEEEccCccccc--
Q 038036 200 GAISDGVGNLTSL----SMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSG-FLPQSLMNCTNLITLNLRINNFRG-- 272 (638)
Q Consensus 200 ~~~~~~l~~l~~L----~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~-~~~~~l~~l~~L~~L~L~~n~l~~-- 272 (638)
+..+..+..+.++ ..++++.|.+..+.+..+ ....++.+++.+|.... ..+..+..+..++...+..+....
T Consensus 187 ~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~ 265 (635)
T 4g8a_A 187 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 265 (635)
T ss_dssp EECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSC
T ss_pred ccccccccchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCccccccccccccccccc
Confidence 8877777665544 468888898886655443 44567788888886552 334567778888877765443221
Q ss_pred ---ccCcccccCCCCccEEecCCCccc---ccccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCCcCCCC
Q 038036 273 ---DLSAYNFSTLHNLHTIDLGNNNFT---GSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNI 346 (638)
Q Consensus 273 ---~~~~~~~~~~~~L~~L~l~~n~i~---~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~ 346 (638)
......+.....+...++..+... ......+..+..++.+.+.++.+... ..+.....++.|++.+|.+..+
T Consensus 266 ~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~ 343 (635)
T 4g8a_A 266 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQF 343 (635)
T ss_dssp CCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSC
T ss_pred ccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCc
Confidence 111123334444555544433222 12344556678899999999887643 3456678999999999988766
Q ss_pred ccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccc--cchHHhhcCCCCCEEecCCCccc
Q 038036 347 TGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKG--QIPTWLARLKKLQVLDLGSNQIT 424 (638)
Q Consensus 347 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~L~~n~l~ 424 (638)
+. ..++.|+.+.+..+........ ..+++|+.++++.|.+.. ..+..+..+.+|+.+++..+...
T Consensus 344 ~~-----~~l~~L~~l~l~~n~~~~~~~~--------~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~ 410 (635)
T 4g8a_A 344 PT-----LKLKSLKRLTFTSNKGGNAFSE--------VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI 410 (635)
T ss_dssp CC-----CBCTTCCEEEEESCCSCCBCCC--------CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE
T ss_pred Cc-----ccchhhhhcccccccCCCCccc--------ccccccccchhhccccccccccccchhhhhhhhhhhccccccc
Confidence 53 3467888999888776543322 357899999999998753 45667778899999999999887
Q ss_pred cCcCccccCCCCCCEEEccCCcCccccc-hhhhhhccchhhhccccCCCCCCcccccccccchhhhhcccccccCCCCeE
Q 038036 425 GSIPGWLGNMPNLFYIDLSYNSISGEFP-KEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAI 503 (638)
Q Consensus 425 ~~~~~~l~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L 503 (638)
. .+..+..+++|+.++++++......+ ..+.+++.+. .+
T Consensus 411 ~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~---------------------------------------~l 450 (635)
T 4g8a_A 411 T-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI---------------------------------------YL 450 (635)
T ss_dssp E-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCC---------------------------------------EE
T ss_pred c-ccccccccccccchhhhhccccccccccccccccccc---------------------------------------cc
Confidence 4 45567889999999999988764433 3444555444 68
Q ss_pred EccCCcccccCchhhhcCcCCCeeeCCCCeee-ecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecccCce
Q 038036 504 YLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFS-GEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDL 582 (638)
Q Consensus 504 ~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l 582 (638)
+++.|.+.+..+..+..++.|++|+|++|.+. +..|+.|..+++|+.|+|++|++++..|..|.++++|++|+|++|++
T Consensus 451 ~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l 530 (635)
T 4g8a_A 451 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530 (635)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred cccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcC
Confidence 99999999888999999999999999999854 45788999999999999999999999999999999999999999999
Q ss_pred eecCCCC-CcCCCcCCCccCCCCC
Q 038036 583 QGQIPSG-GQFLTFPSSSFEGNPR 605 (638)
Q Consensus 583 ~~~~p~~-~~~~~l~~~~~~~n~~ 605 (638)
++..|.. ..+.++..+++++|..
T Consensus 531 ~~l~~~~~~~l~~L~~L~Ls~N~l 554 (635)
T 4g8a_A 531 FSLDTFPYKCLNSLQVLDYSLNHI 554 (635)
T ss_dssp CBCCCGGGTTCTTCCEEECTTSCC
T ss_pred CCCChhHHhCCCCCCEEECCCCcC
Confidence 9766653 4467888889999843
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.1e-38 Score=336.26 Aligned_cols=384 Identities=18% Similarity=0.204 Sum_probs=320.2
Q ss_pred ecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCcc-CCccCCCCCCCc
Q 038036 87 LETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQ-LPPGLGNCSKLQ 165 (638)
Q Consensus 87 L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~-~~~~l~~l~~L~ 165 (638)
-+.++.+++.++ .+|. ..++|++|++++|.+.+..+..+. ++++|++|++++|.+.+. .+..|..+++|+
T Consensus 12 ~~~~~c~~~~l~-~lp~----l~~~l~~L~Ls~n~i~~~~~~~~~----~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~ 82 (455)
T 3v47_A 12 GYNAICINRGLH-QVPE----LPAHVNYVDLSLNSIAELNETSFS----RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLI 82 (455)
T ss_dssp TTEEECCSSCCS-SCCC----CCTTCCEEECCSSCCCEECTTTTS----SCTTCCEEECCCCSTTCEECTTTTTTCTTCC
T ss_pred ccccCcCCCCcc-cCCC----CCCccCEEEecCCccCcCChhHhc----cCccccEEECcCCcccceECcccccccccCC
Confidence 457888889888 6665 358999999999999987676555 899999999999998744 467899999999
Q ss_pred EEEcccccccccCCccccCCCCCCEEEccCCCCccccCcc--ccCCCCCCEEEeecCcCcccCCcc-cCCCCCCCEEEcc
Q 038036 166 TFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDG--VGNLTSLSMLDLQSNKFSGLIPQD-IGKLTNLKSLQLH 242 (638)
Q Consensus 166 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~L~ 242 (638)
+|++++|.+.+..|..|.++++|++|++++|.+.+..+.. +..+++|++|++++|.+++..|.. +..+++|++|+++
T Consensus 83 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 162 (455)
T 3v47_A 83 ILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLT 162 (455)
T ss_dssp EEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECT
T ss_pred EEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCC
Confidence 9999999999888999999999999999999998755444 899999999999999999887766 8899999999999
Q ss_pred CCCCCCCcchhhcCC--CCCcEEEccCcccccccCccc--------ccCCCCccEEecCCCcccccccccCcCC---CCC
Q 038036 243 TNSLSGFLPQSLMNC--TNLITLNLRINNFRGDLSAYN--------FSTLHNLHTIDLGNNNFTGSFPLTLTSC---KVL 309 (638)
Q Consensus 243 ~n~i~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~~--------~~~~~~L~~L~l~~n~i~~~~~~~l~~~---~~L 309 (638)
+|.+++..+..+..+ .+|+.|++++|.+.+ ++... +..+++|+.|++++|.+++..+..+... ++|
T Consensus 163 ~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~-~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L 241 (455)
T 3v47_A 163 FNKVKSICEEDLLNFQGKHFTLLRLSSITLQD-MNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKI 241 (455)
T ss_dssp TCCBSCCCTTTSGGGTTCEEEEEECTTCBCTT-CSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCE
T ss_pred CCcccccChhhhhccccccccccccccCcccc-cchhhccccccccccccceeeeEecCCCcccccchhhhhccccccce
Confidence 999998888888776 789999999999874 33212 3356899999999999988777766543 889
Q ss_pred CEEEcCCCcccccCchhhhcCCCCCEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCc
Q 038036 310 TAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNL 389 (638)
Q Consensus 310 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L 389 (638)
+.|++++|...+... ..+.+....... +. ....++|
T Consensus 242 ~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~--~~----------------------------~~~~~~L 277 (455)
T 3v47_A 242 QSLILSNSYNMGSSF--------------GHTNFKDPDNFT--FK----------------------------GLEASGV 277 (455)
T ss_dssp EEEECTTCTTTSCCT--------------TCCSSCCCCTTT--TG----------------------------GGTTSCC
T ss_pred eeEeecccccccccc--------------chhhhccCcccc--cc----------------------------cccccCc
Confidence 999999998754311 112222111100 00 0124678
Q ss_pred cEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhhccchhhhcccc
Q 038036 390 LVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNR 469 (638)
Q Consensus 390 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~ 469 (638)
+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|..+.++++|+
T Consensus 278 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~------- 350 (455)
T 3v47_A 278 KTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLE------- 350 (455)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCC-------
T ss_pred eEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCC-------
Confidence 8888888888888888899999999999999999988888999999999999999999888888888888887
Q ss_pred CCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCC
Q 038036 470 ADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLE 549 (638)
Q Consensus 470 ~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 549 (638)
.|++++|.+++..|..+.++++|++|+|++|++++..+..|..+++|+
T Consensus 351 --------------------------------~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 398 (455)
T 3v47_A 351 --------------------------------VLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQ 398 (455)
T ss_dssp --------------------------------EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred --------------------------------EEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCccc
Confidence 699999999988899999999999999999999977777889999999
Q ss_pred eeeCCCCcceecCC
Q 038036 550 GLDLSENNLHGEIP 563 (638)
Q Consensus 550 ~L~Ls~n~l~~~~p 563 (638)
+|++++|++++..|
T Consensus 399 ~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 399 KIWLHTNPWDCSCP 412 (455)
T ss_dssp EEECCSSCBCCCTT
T ss_pred EEEccCCCcccCCC
Confidence 99999999998776
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=4.7e-37 Score=323.03 Aligned_cols=281 Identities=19% Similarity=0.206 Sum_probs=144.2
Q ss_pred CCCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcE
Q 038036 35 KARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLIT 114 (638)
Q Consensus 35 ~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~ 114 (638)
..++++|+++++.+ +.+|++++++++|++|++++|.+.|.+|.. +..+.+|+.+++..|. ..++++
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~-~~~l~~L~~l~l~~c~------------~~~l~~ 75 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPG-NGEQREMAVSRLRDCL------------DRQAHE 75 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTT-SCCCHHHHHHHHHHHH------------HHTCSE
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcc-cccchhcchhhhhhhh------------ccCCCE
Confidence 35778888888888 678888888888888888888877666654 3455555333332221 123555
Q ss_pred EEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEcc
Q 038036 115 LNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLP 194 (638)
Q Consensus 115 L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~ 194 (638)
|++++|.+++. |.. .++|++|++++|.+++ +|.. .++|++|++++|.+.+ ++.. .++|++|+++
T Consensus 76 L~l~~~~l~~l-p~~-------~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~ 139 (454)
T 1jl5_A 76 LELNNLGLSSL-PEL-------PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVS 139 (454)
T ss_dssp EECTTSCCSCC-CSC-------CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECC
T ss_pred EEecCCccccC-CCC-------cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECc
Confidence 66666655532 211 2456666666666653 3432 2556666666665552 2211 1456666666
Q ss_pred CCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCccccccc
Q 038036 195 GNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDL 274 (638)
Q Consensus 195 ~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 274 (638)
+|.+.+ +| .+..+++|++|++++|++++ +|.. .++|++|++++|.+++ +| .+.++++|+.|++++|.+.+ +
T Consensus 140 ~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l 210 (454)
T 1jl5_A 140 NNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-L 210 (454)
T ss_dssp SSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-C
T ss_pred CCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-C
Confidence 666664 44 36666666666666666654 2322 2366666666666664 34 46666666666666666653 3
Q ss_pred CcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCCcCCCCcccccccc
Q 038036 275 SAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILM 354 (638)
Q Consensus 275 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~ 354 (638)
+. ..++|+.|++++|.++ .+| .+..+++|++|++++|++++ +|. .+++|+.|++++|.++.++..
T Consensus 211 ~~----~~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~l~~~----- 275 (454)
T 1jl5_A 211 PD----LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTDLPEL----- 275 (454)
T ss_dssp CC----CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSCCCCC-----
T ss_pred CC----CcCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccccCcc-----
Confidence 22 1246677777777666 445 36666777777777776664 232 235677777777766654431
Q ss_pred CCCCCcEEEcCCCccc
Q 038036 355 GCKNLRMLLLCKKFFH 370 (638)
Q Consensus 355 ~~~~L~~L~l~~~~~~ 370 (638)
.++|+.|++++|.+.
T Consensus 276 -~~~L~~L~ls~N~l~ 290 (454)
T 1jl5_A 276 -PQSLTFLDVSENIFS 290 (454)
T ss_dssp -CTTCCEEECCSSCCS
T ss_pred -cCcCCEEECcCCccC
Confidence 244555555555443
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.2e-36 Score=317.95 Aligned_cols=416 Identities=20% Similarity=0.256 Sum_probs=214.0
Q ss_pred CCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCC
Q 038036 59 LTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLS 138 (638)
Q Consensus 59 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~ 138 (638)
.++|++|++++|.+ +.+|.. +..+.+|++|++++|.+++.+|..+ ..+++|+.+++..|. ..
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~-i~~L~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~l~l~~c~---------------~~ 71 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVE-AENVKSKTEYYNAWSEWERNAPPGN-GEQREMAVSRLRDCL---------------DR 71 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTS-CCCHHHHHHHHHHHH---------------HH
T ss_pred cccchhhhcccCch-hhCChh-HhcccchhhhhccCCcccccCCccc-ccchhcchhhhhhhh---------------cc
Confidence 45666666666666 455543 4456666666666666655555432 224444444444432 13
Q ss_pred CcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEee
Q 038036 139 SLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQ 218 (638)
Q Consensus 139 ~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~ 218 (638)
++++|++++|.+++ +|.. .++|++|++++|.+++ +|.. +++|++|++++|.+.+. +.. .++|++|+++
T Consensus 72 ~l~~L~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~ 139 (454)
T 1jl5_A 72 QAHELELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVS 139 (454)
T ss_dssp TCSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CSC---CTTCCEEECC
T ss_pred CCCEEEecCCcccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cCC---CCCCCEEECc
Confidence 56889999998874 4442 3688899999988885 6643 47888999988888742 221 2688888888
Q ss_pred cCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCccccc
Q 038036 219 SNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGS 298 (638)
Q Consensus 219 ~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~ 298 (638)
+|.+++ +| .++.+++|++|++++|++++ +|..+ ++|+.|++++|.+.+ ++ .+..+++|+.|++++|.+++
T Consensus 140 ~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~--~~~~l~~L~~L~l~~N~l~~- 209 (454)
T 1jl5_A 140 NNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP--ELQNLPFLTAIYADNNSLKK- 209 (454)
T ss_dssp SSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC--CCTTCTTCCEEECCSSCCSS-
T ss_pred CCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc--cccCCCCCCEEECCCCcCCc-
Confidence 888886 45 58888888888888888874 44433 588888888888874 44 47788888888888888874
Q ss_pred ccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchh
Q 038036 299 FPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQ 378 (638)
Q Consensus 299 ~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 378 (638)
+|.. .++|++|++++|.+. .+| .+..+++|+.|++++|.++.++.. .++|+.|++++|.+.+ ++.
T Consensus 210 l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l~~~------~~~L~~L~l~~N~l~~-l~~--- 274 (454)
T 1jl5_A 210 LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTLPDL------PPSLEALNVRDNYLTD-LPE--- 274 (454)
T ss_dssp CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSCCSC------CTTCCEEECCSSCCSC-CCC---
T ss_pred CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCccccc------ccccCEEECCCCcccc-cCc---
Confidence 4432 257888888888877 455 377788888888888887765532 3567777777666554 221
Q ss_pred hhccccCCCCccEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCccccCC-CCCCEEEccCCcCccccchhhhh
Q 038036 379 RAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNM-PNLFYIDLSYNSISGEFPKEFCG 457 (638)
Q Consensus 379 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~L~~n~i~~~~~~~~~~ 457 (638)
.+++|++|++++|.+.+. +. -.++|+.|++++|++++ ++ .+ ++|++|++++|++.+ +|..
T Consensus 275 ------~~~~L~~L~ls~N~l~~l-~~---~~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~--- 335 (454)
T 1jl5_A 275 ------LPQSLTFLDVSENIFSGL-SE---LPPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL--- 335 (454)
T ss_dssp ------CCTTCCEEECCSSCCSEE-SC---CCTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---
T ss_pred ------ccCcCCEEECcCCccCcc-cC---cCCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---
Confidence 224566666666665541 10 01456666666665553 11 12 356666666665553 2321
Q ss_pred hccchhhhccccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeee-
Q 038036 458 LRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSG- 536 (638)
Q Consensus 458 l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~- 536 (638)
+++|+ .|++++|.++ .+|. .+++|++|++++|++++
T Consensus 336 ~~~L~---------------------------------------~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l 372 (454)
T 1jl5_A 336 PPRLE---------------------------------------RLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREF 372 (454)
T ss_dssp CTTCC---------------------------------------EEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSC
T ss_pred CCcCC---------------------------------------EEECCCCccc-cccc---hhhhccEEECCCCCCCcC
Confidence 11121 3555555555 2333 24555555555555554
Q ss_pred -cCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecccCceee--cCCCCCcCCCcCCCccCCCCCCC
Q 038036 537 -EIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQG--QIPSGGQFLTFPSSSFEGNPRFC 607 (638)
Q Consensus 537 -~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~--~~p~~~~~~~l~~~~~~~n~~lc 607 (638)
.+|.++..+ +.|...+.+|.. +++|+.|++++|++++ .+|. ++..+.+.+|...|
T Consensus 373 ~~ip~~l~~L--------~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~-----sl~~L~~~~~~~~~ 430 (454)
T 1jl5_A 373 PDIPESVEDL--------RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPE-----SVEDLRMNSERVVD 430 (454)
T ss_dssp CCCCTTCCEE--------ECCC----------------------------------------------------
T ss_pred CCChHHHHhh--------hhcccccccccc---cCcCCEEECCCCcCCccccchh-----hHhheeCcCcccCC
Confidence 334333221 123333333332 2788999999999987 6663 46666666665444
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.1e-34 Score=307.82 Aligned_cols=279 Identities=29% Similarity=0.424 Sum_probs=138.8
Q ss_pred CCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCC
Q 038036 109 AENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSL 188 (638)
Q Consensus 109 ~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 188 (638)
++++++|+++++.+.. ++.+ ..+++|++|++++|.+++. +. +..+++|++|++++|.+.+..+ +..+++|
T Consensus 45 l~~l~~L~l~~~~i~~-l~~~-----~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L 114 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS-IDGV-----EYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP--LANLTNL 114 (466)
T ss_dssp HHTCCEEECCSSCCCC-CTTG-----GGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTC
T ss_pred hccccEEecCCCCCcc-Ccch-----hhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh--hcCCCCC
Confidence 4566677776666553 2322 1466666666666666633 22 6666666666666666653322 5666666
Q ss_pred CEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCc
Q 038036 189 QEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRIN 268 (638)
Q Consensus 189 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n 268 (638)
++|++++|.+.+..+ +..+++|++|++++|.+.+. ..+..+++|++|+++ +.+.+.. .+.++++|+.|++++|
T Consensus 115 ~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n 187 (466)
T 1o6v_A 115 TGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSN 187 (466)
T ss_dssp CEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSS
T ss_pred CEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCC
Confidence 666666666654322 55666666666666665543 235555666666654 2333221 2555555555555555
Q ss_pred ccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCCcCCCCcc
Q 038036 269 NFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITG 348 (638)
Q Consensus 269 ~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 348 (638)
.+.+ ++ .+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+++. ..+..+++|+.|++++|.+..++.
T Consensus 188 ~l~~-~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~ 260 (466)
T 1o6v_A 188 KVSD-IS--VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP 260 (466)
T ss_dssp CCCC-CG--GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred cCCC-Ch--hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh
Confidence 5442 21 23444445555555444443222 33344444444444444321 223333334444443333332211
Q ss_pred ccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcC
Q 038036 349 AIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIP 428 (638)
Q Consensus 349 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 428 (638)
+ ..+++|++|++++|.+.+..+ +..+++|+.|++++|++.+..+
T Consensus 261 ----~------------------------------~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~ 304 (466)
T 1o6v_A 261 ----L------------------------------SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 304 (466)
T ss_dssp ----G------------------------------TTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG
T ss_pred ----h------------------------------hcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh
Confidence 0 133444555555554443322 4555555555555555554322
Q ss_pred ccccCCCCCCEEEccCCcCcc
Q 038036 429 GWLGNMPNLFYIDLSYNSISG 449 (638)
Q Consensus 429 ~~l~~l~~L~~L~L~~n~i~~ 449 (638)
+..+++|++|++++|.+.+
T Consensus 305 --~~~l~~L~~L~L~~n~l~~ 323 (466)
T 1o6v_A 305 --ISNLKNLTYLTLYFNNISD 323 (466)
T ss_dssp --GGGCTTCSEEECCSSCCSC
T ss_pred --hcCCCCCCEEECcCCcCCC
Confidence 4455555555555555543
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.1e-34 Score=304.39 Aligned_cols=300 Identities=26% Similarity=0.340 Sum_probs=175.8
Q ss_pred cceecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCC
Q 038036 84 VIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSK 163 (638)
Q Consensus 84 ~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~ 163 (638)
+.+++.|+++++.++ .++. +..+++|++|++++|.+.+..+ + ..+++|++|++++|.+.+..+ +.++++
T Consensus 45 l~~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~~--~----~~l~~L~~L~l~~n~l~~~~~--~~~l~~ 113 (466)
T 1o6v_A 45 LDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP--L----KNLTKLVDILMNNNQIADITP--LANLTN 113 (466)
T ss_dssp HHTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--G----TTCTTCCEEECCSSCCCCCGG--GTTCTT
T ss_pred hccccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccCCchh--h----hccccCCEEECCCCccccChh--hcCCCC
Confidence 455666666666665 3332 3446666777776666664433 1 256666777776666663322 666666
Q ss_pred CcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccC
Q 038036 164 LQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHT 243 (638)
Q Consensus 164 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~ 243 (638)
|++|++++|.+.+. +. +..+++|++|++++|.+.+. + .+..+++|++|+++ +.+.+. ..+..+++|++|++++
T Consensus 114 L~~L~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~ 186 (466)
T 1o6v_A 114 LTGLTLFNNQITDI-DP-LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISS 186 (466)
T ss_dssp CCEEECCSSCCCCC-GG-GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCS
T ss_pred CCEEECCCCCCCCC-hH-HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCc--hhhccCCCCCEEECcC
Confidence 77777766666633 22 66666677777766666532 2 35666666666665 333322 2366666667777766
Q ss_pred CCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccC
Q 038036 244 NSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQI 323 (638)
Q Consensus 244 n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~ 323 (638)
|.+++. ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..
T Consensus 187 n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~ 259 (466)
T 1o6v_A 187 NKVSDI--SVLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA 259 (466)
T ss_dssp SCCCCC--GGGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG
T ss_pred CcCCCC--hhhccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccch
Confidence 666633 236666667777776666653222 45566666777766666532 24556666677777666665443
Q ss_pred chhhhcCCCCCEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccc
Q 038036 324 SPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQI 403 (638)
Q Consensus 324 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 403 (638)
+ +..+++|+.|++++|.+..++. +. .+++|+.|++++|.+.+..
T Consensus 260 ~--~~~l~~L~~L~l~~n~l~~~~~----~~------------------------------~l~~L~~L~L~~n~l~~~~ 303 (466)
T 1o6v_A 260 P--LSGLTKLTELKLGANQISNISP----LA------------------------------GLTALTNLELNENQLEDIS 303 (466)
T ss_dssp G--GTTCTTCSEEECCSSCCCCCGG----GT------------------------------TCTTCSEEECCSSCCSCCG
T ss_pred h--hhcCCCCCEEECCCCccCcccc----cc------------------------------CCCccCeEEcCCCcccCch
Confidence 3 5566666666666666654332 11 2344445555555554433
Q ss_pred hHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCc
Q 038036 404 PTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSIS 448 (638)
Q Consensus 404 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~ 448 (638)
+ +..+++|+.|++++|++++..+ +..+++|++|++++|++.
T Consensus 304 ~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~ 344 (466)
T 1o6v_A 304 P--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVS 344 (466)
T ss_dssp G--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCC
T ss_pred h--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccC
Confidence 3 5566667777777666665443 556666666666666665
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.3e-34 Score=304.60 Aligned_cols=355 Identities=21% Similarity=0.216 Sum_probs=179.0
Q ss_pred cccceecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCC
Q 038036 82 SFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNC 161 (638)
Q Consensus 82 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l 161 (638)
..+++|++|++++|.+++ +| .+..+++|++|++++|.+++. + +..+++|++|++++|.+++. + ++.+
T Consensus 39 ~~l~~L~~L~Ls~n~l~~-~~--~l~~l~~L~~L~Ls~n~l~~~-~------~~~l~~L~~L~Ls~N~l~~~-~--~~~l 105 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSITD-MT--GIEKLTGLTKLICTSNNITTL-D------LSQNTNLTYLACDSNKLTNL-D--VTPL 105 (457)
T ss_dssp HHHTTCCEEECCSSCCCC-CT--TGGGCTTCSEEECCSSCCSCC-C------CTTCTTCSEEECCSSCCSCC-C--CTTC
T ss_pred hHcCCCCEEEccCCCccc-Ch--hhcccCCCCEEEccCCcCCeE-c------cccCCCCCEEECcCCCCcee-e--cCCC
Confidence 344555555555555553 22 133455555555555554432 1 11445555555555554432 1 4444
Q ss_pred CCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEc
Q 038036 162 SKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQL 241 (638)
Q Consensus 162 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 241 (638)
++|++|++++|.+++ ++ +..+++|++|++++|.+++. .+..+++|++|++++|...+
T Consensus 106 ~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~----------------- 162 (457)
T 3bz5_A 106 TKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKIT----------------- 162 (457)
T ss_dssp TTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCC-----------------
T ss_pred CcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccc-----------------
Confidence 455555555544442 22 44444444444444444432 13344444444444443222
Q ss_pred cCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccc
Q 038036 242 HTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVG 321 (638)
Q Consensus 242 ~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~ 321 (638)
.+ .+..+++|+.|++++|.+.+ ++ +..+++|+.|++++|.+++. .+..+++|++|++++|++++
T Consensus 163 -------~~--~~~~l~~L~~L~ls~n~l~~-l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ 226 (457)
T 3bz5_A 163 -------KL--DVTPQTQLTTLDCSFNKITE-LD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE 226 (457)
T ss_dssp -------CC--CCTTCTTCCEEECCSSCCCC-CC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC
T ss_pred -------cc--ccccCCcCCEEECCCCccce-ec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc
Confidence 22 23334444444444444432 21 33444444444444444432 13444445555555555443
Q ss_pred cCchhhhcCCCCCEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccc
Q 038036 322 QISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKG 401 (638)
Q Consensus 322 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 401 (638)
+| +..+++|+.|++++|.++.++ ...+++|+.++++.+ +|+.|++++|.+.+
T Consensus 227 -ip--~~~l~~L~~L~l~~N~l~~~~-----~~~l~~L~~L~l~~n--------------------~L~~L~l~~n~~~~ 278 (457)
T 3bz5_A 227 -ID--VTPLTQLTYFDCSVNPLTELD-----VSTLSKLTTLHCIQT--------------------DLLEIDLTHNTQLI 278 (457)
T ss_dssp -CC--CTTCTTCSEEECCSSCCSCCC-----CTTCTTCCEEECTTC--------------------CCSCCCCTTCTTCC
T ss_pred -cC--ccccCCCCEEEeeCCcCCCcC-----HHHCCCCCEEeccCC--------------------CCCEEECCCCccCC
Confidence 22 344455555555555554432 223344444443321 23344444444444
Q ss_pred cchHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhhccchhhhccccCCCCCCcccccc
Q 038036 402 QIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFV 481 (638)
Q Consensus 402 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~ 481 (638)
.+| +..+++|+.|++++|...+.+|. ..++|+.|++++|+ +|
T Consensus 279 ~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~~-------------~L-------------------- 320 (457)
T 3bz5_A 279 YFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQNP-------------KL-------------------- 320 (457)
T ss_dssp EEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTCT-------------TC--------------------
T ss_pred ccc--ccccccCCEEECCCCcccceecc---CCCcceEechhhcc-------------cC--------------------
Confidence 443 23455555555555554444332 23344444444441 11
Q ss_pred cccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceec
Q 038036 482 PKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGE 561 (638)
Q Consensus 482 ~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ 561 (638)
+.|++++|++++. + +.++++|++|++++|++++ ++.|+.|++++|.+.+.
T Consensus 321 -------------------~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~ 370 (457)
T 3bz5_A 321 -------------------VYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE 370 (457)
T ss_dssp -------------------CEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE
T ss_pred -------------------CEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec
Confidence 2688888888863 3 7888888889998888874 25667778888888875
Q ss_pred CCccccccCCCCeEecccCceeecCCCC
Q 038036 562 IPLSIIDLHFLSSFSVANNDLQGQIPSG 589 (638)
Q Consensus 562 ~p~~l~~l~~L~~L~l~~n~l~~~~p~~ 589 (638)
..+..|+.+++++|+++|.+|..
T Consensus 371 -----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 371 -----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp -----EEEEECCCBCCBTTBEEEECCTT
T ss_pred -----ceeeecCccccccCcEEEEcChh
Confidence 34556788889999999988864
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=6.3e-35 Score=311.23 Aligned_cols=321 Identities=22% Similarity=0.252 Sum_probs=211.9
Q ss_pred cEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCC
Q 038036 165 QTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTN 244 (638)
Q Consensus 165 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n 244 (638)
+.++.+++.++ .+|..+. +++++|++++|.+.+..+..|..+++|++|++++|.+++..|..|..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 46677777666 5665542 57788888888887766777778888888888888877777777777788888888888
Q ss_pred CCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCc
Q 038036 245 SLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQIS 324 (638)
Q Consensus 245 ~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~ 324 (638)
.++...+..+.++++|+.|++++|.+.+ +....+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVI-LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred cCCccCcccccCCCCCCEEECCCCcccc-CChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence 7775555566777777777777777763 333466777777777777777776666667777777777777777765555
Q ss_pred hhhhcCCCCCEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccch
Q 038036 325 PEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIP 404 (638)
Q Consensus 325 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 404 (638)
..+..+++|+.|++++|.+..++.. .+ ..+++|+.|++++|...+.++
T Consensus 170 ~~l~~l~~L~~L~l~~n~i~~~~~~--~~------------------------------~~l~~L~~L~l~~~~~~~~~~ 217 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLNINAIRDY--SF------------------------------KRLYRLKVLEISHWPYLDTMT 217 (477)
T ss_dssp HHHTTCTTCCEEEEESCCCCEECTT--CS------------------------------CSCTTCCEEEEECCTTCCEEC
T ss_pred hHhcccCCCcEEeCCCCcCcEeChh--hc------------------------------ccCcccceeeCCCCccccccC
Confidence 5666667777777766665543221 01 134566666777666665555
Q ss_pred HHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhhccchhhhccccCCCCCCccccccccc
Q 038036 405 TWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKT 484 (638)
Q Consensus 405 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~ 484 (638)
.......+|+.|++++|.+++..+..+..+++|++|++++|.+.+..+..|..+++|+
T Consensus 218 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~---------------------- 275 (477)
T 2id5_A 218 PNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQ---------------------- 275 (477)
T ss_dssp TTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCC----------------------
T ss_pred cccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCC----------------------
Confidence 5555555777777777777744445667777777777777777655555555555444
Q ss_pred chhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCccee
Q 038036 485 KIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHG 560 (638)
Q Consensus 485 ~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~ 560 (638)
.|++++|++++..|..|.++++|++|+|++|.+++..+..|..+++|+.|++++|++..
T Consensus 276 -----------------~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 276 -----------------EIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp -----------------EEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred -----------------EEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 45566666665555566666666666666666654444555556666666666666553
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=8.9e-34 Score=298.31 Aligned_cols=360 Identities=19% Similarity=0.206 Sum_probs=243.3
Q ss_pred cccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCcccc
Q 038036 53 YPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSW 132 (638)
Q Consensus 53 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 132 (638)
+..++++++|++|++++|.+++ +| .+..+++|++|++++|.+++ ++ +..+++|++|++++|.+++. +
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~-~~--~l~~l~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l~~~-~----- 101 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITD-MT--GIEKLTGLTKLICTSNNITT-LD---LSQNTNLTYLACDSNKLTNL-D----- 101 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCC-CT--TGGGCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCC-C-----
T ss_pred ccChhHcCCCCEEEccCCCccc-Ch--hhcccCCCCEEEccCCcCCe-Ec---cccCCCCCEEECcCCCCcee-e-----
Confidence 3356677788888888887774 44 36677778888888888774 33 45577888888888877753 2
Q ss_pred CCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCC
Q 038036 133 NNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSL 212 (638)
Q Consensus 133 ~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L 212 (638)
+..+++|++|++++|.+++ ++ ++.+++|++|++++|.+++ + .+..+++|++|++++|...+.+ .+..+++|
T Consensus 102 -~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l--~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L 172 (457)
T 3bz5_A 102 -VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-I--DVSHNTQLTELDCHLNKKITKL--DVTPQTQL 172 (457)
T ss_dssp -CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-C--CCTTCTTCCEEECTTCSCCCCC--CCTTCTTC
T ss_pred -cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-e--ccccCCcCCEEECCCCCccccc--ccccCCcC
Confidence 2367888888888888775 33 7778888888888888775 3 2677788888888888544343 46677888
Q ss_pred CEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCC
Q 038036 213 SMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGN 292 (638)
Q Consensus 213 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~ 292 (638)
++|++++|.+++. | +..+++|+.|++++|.+++. .+..+++|+.|++++|++.+ ++ +..+++|+.|++++
T Consensus 173 ~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~~ 242 (457)
T 3bz5_A 173 TTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYFDCSV 242 (457)
T ss_dssp CEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCS
T ss_pred CEEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC---ccccCCCCEEEeeC
Confidence 8888888888764 3 67778888888888888754 37777888888888887774 43 56777888888888
Q ss_pred CcccccccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCCcCCCCccccccccCCCCCcEEEcCCCccccc
Q 038036 293 NNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEA 372 (638)
Q Consensus 293 n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 372 (638)
|.+++.. +..+++|+.|+++.| +|+.|++++|.+.. .+. ...+++|+.|++++|...+.
T Consensus 243 N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~---~~~-~~~l~~L~~L~Ls~n~~l~~ 301 (457)
T 3bz5_A 243 NPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLI---YFQ-AEGCRKIKELDVTHNTQLYL 301 (457)
T ss_dssp SCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCC---EEE-CTTCTTCCCCCCTTCTTCCE
T ss_pred CcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCC---ccc-ccccccCCEEECCCCcccce
Confidence 8777532 345667777776654 34555666665432 111 34566777777776654443
Q ss_pred CCcchhhhccccCCCCccEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccc
Q 038036 373 IPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFP 452 (638)
Q Consensus 373 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~ 452 (638)
++. ..++|+.|++++ +++|++|++++|++++. + +..+++|+.|++++|++.+.
T Consensus 302 l~~---------~~~~L~~L~l~~-------------~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~l-- 354 (457)
T 3bz5_A 302 LDC---------QAAGITELDLSQ-------------NPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQDF-- 354 (457)
T ss_dssp EEC---------TTCCCSCCCCTT-------------CTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCBC--
T ss_pred ecc---------CCCcceEechhh-------------cccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCCc--
Confidence 332 223444444433 36788888888888864 2 77888888888888888741
Q ss_pred hhhhhhccchhhhccccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCC
Q 038036 453 KEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLN 532 (638)
Q Consensus 453 ~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n 532 (638)
+.|. .|++++|.+.|. ..+..|+.+++++|
T Consensus 355 ------~~L~---------------------------------------~L~l~~n~l~g~-----~~~~~l~~l~l~~N 384 (457)
T 3bz5_A 355 ------SSVG---------------------------------------KIPALNNNFEAE-----GQTITMPKETLTNN 384 (457)
T ss_dssp ------TTGG---------------------------------------GSSGGGTSEEEE-----EEEEECCCBCCBTT
T ss_pred ------cccc---------------------------------------cccccCCcEEec-----ceeeecCccccccC
Confidence 1222 234555666543 34566777788888
Q ss_pred eeeecCChhh
Q 038036 533 NFSGEIPDQI 542 (638)
Q Consensus 533 ~l~~~~p~~~ 542 (638)
+++|.+|..+
T Consensus 385 ~l~g~ip~~~ 394 (457)
T 3bz5_A 385 SLTIAVSPDL 394 (457)
T ss_dssp BEEEECCTTC
T ss_pred cEEEEcChhH
Confidence 8887777654
No 34
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.4e-35 Score=295.41 Aligned_cols=276 Identities=29% Similarity=0.437 Sum_probs=214.4
Q ss_pred ccCCCCCCCCCCCCCCcC--ccceEECCC---CCeEEEECCCCCcee--eccccCcCCCCCCEEECCC-CCCCCCCcccc
Q 038036 9 FSASNPPLNWSFSTDCCF--WEGIKCDSK---ARVTHLWLPYRGLSG--SIYPFIGNLTHLCHLNLSH-NHLSGPLAINS 80 (638)
Q Consensus 9 ~~~~~~~~~w~~~~~~~~--w~g~~c~~~---~~v~~L~l~~~~~~~--~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~~ 80 (638)
+.|...+.+|..+.+||. |.||.|+.. ++|++|+++++.+.+ .+|+.++++++|++|++++ |.+.+.+|. .
T Consensus 18 ~~~~~~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~-~ 96 (313)
T 1ogq_A 18 LGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP-A 96 (313)
T ss_dssp TTCCGGGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCG-G
T ss_pred cCCcccccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCCh-h
Confidence 344446889988889998 999999854 799999999999998 8999999999999999995 888876664 4
Q ss_pred ccccceecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCC
Q 038036 81 FSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGN 160 (638)
Q Consensus 81 ~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~ 160 (638)
|..+++|++|+|++|.+++.+|.. +..+++|++|++++|.+.+..|..+. .+++|++|++++|.+++.+|..+..
T Consensus 97 l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~----~l~~L~~L~L~~N~l~~~~p~~l~~ 171 (313)
T 1ogq_A 97 IAKLTQLHYLYITHTNVSGAIPDF-LSQIKTLVTLDFSYNALSGTLPPSIS----SLPNLVGITFDGNRISGAIPDSYGS 171 (313)
T ss_dssp GGGCTTCSEEEEEEECCEEECCGG-GGGCTTCCEEECCSSEEESCCCGGGG----GCTTCCEEECCSSCCEEECCGGGGC
T ss_pred HhcCCCCCEEECcCCeeCCcCCHH-HhCCCCCCEEeCCCCccCCcCChHHh----cCCCCCeEECcCCcccCcCCHHHhh
Confidence 677888899999888888666664 44578888888888888776666554 6788888888888887777777777
Q ss_pred CC-CCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEE
Q 038036 161 CS-KLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSL 239 (638)
Q Consensus 161 l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 239 (638)
++ .|++|++++|.+.+.+|..+..++ |++|++++|.+.+..+..+..+++|++|++++|.+++..+. +..+++|++|
T Consensus 172 l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L 249 (313)
T 1ogq_A 172 FSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGL 249 (313)
T ss_dssp CCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEE
T ss_pred hhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEE
Confidence 77 788888888888777777777776 88888888877777777777777788888877777755443 6667777777
Q ss_pred EccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCc
Q 038036 240 QLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNN 294 (638)
Q Consensus 240 ~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~ 294 (638)
++++|.+++..|..+..+++|+.|++++|.+.+.++. ...+++|+.+++++|+
T Consensus 250 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~--~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNK 302 (313)
T ss_dssp ECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC--STTGGGSCGGGTCSSS
T ss_pred ECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC--CccccccChHHhcCCC
Confidence 7777777766777777777777777777777766654 2566667777777665
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=6.9e-34 Score=294.82 Aligned_cols=335 Identities=18% Similarity=0.187 Sum_probs=194.5
Q ss_pred CCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEE
Q 038036 161 CSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQ 240 (638)
Q Consensus 161 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 240 (638)
++++++|+++++.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 45666666666666533333345566666666666666655555566666666666666666655555555566666666
Q ss_pred ccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCccc
Q 038036 241 LHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIV 320 (638)
Q Consensus 241 L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~ 320 (638)
+++|.++...+..+.++++|++|++++|.+.+ ++...+..+++|+.|++++|.+++
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~----------------------- 179 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTH----------------------- 179 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTSSCTTCCEEECCSSCCSB-----------------------
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCc-cChhhccCCCCCCEEECCCCcCCc-----------------------
Confidence 66665553333334555555555555555542 222234445555555555554442
Q ss_pred ccCchhhhcCCCCCEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCccc
Q 038036 321 GQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIK 400 (638)
Q Consensus 321 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 400 (638)
. .+..+++|+.|++++|.+..++ ..+.|+.|++++|.+..... ..+++|+.|++++|.+.
T Consensus 180 -~---~~~~l~~L~~L~l~~n~l~~~~-------~~~~L~~L~l~~n~l~~~~~---------~~~~~L~~L~l~~n~l~ 239 (390)
T 3o6n_A 180 -V---DLSLIPSLFHANVSYNLLSTLA-------IPIAVEELDASHNSINVVRG---------PVNVELTILKLQHNNLT 239 (390)
T ss_dssp -C---CGGGCTTCSEEECCSSCCSEEE-------CCSSCSEEECCSSCCCEEEC---------CCCSSCCEEECCSSCCC
T ss_pred -c---ccccccccceeecccccccccC-------CCCcceEEECCCCeeeeccc---------cccccccEEECCCCCCc
Confidence 2 1233344444444444443221 11233333333333322100 12244555555555554
Q ss_pred ccchHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhhccchhhhccccCCCCCCccccc
Q 038036 401 GQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLF 480 (638)
Q Consensus 401 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~ 480 (638)
+. ..+..+++|++|++++|.+++..|..+..+++|++|++++|++.
T Consensus 240 ~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-------------------------------- 285 (390)
T 3o6n_A 240 DT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-------------------------------- 285 (390)
T ss_dssp CC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC--------------------------------
T ss_pred cc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc--------------------------------
Confidence 32 34555556666666666655555555555556666665555554
Q ss_pred ccccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCccee
Q 038036 481 VPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHG 560 (638)
Q Consensus 481 ~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~ 560 (638)
.+|..+..+++|++|+|++|+++ .+|..+..+++|+.|++++|+++.
T Consensus 286 --------------------------------~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~ 332 (390)
T 3o6n_A 286 --------------------------------ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT 332 (390)
T ss_dssp --------------------------------EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC
T ss_pred --------------------------------ccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccce
Confidence 23334466888999999999988 677778889999999999999984
Q ss_pred cCCccccccCCCCeEecccCceeecCCCCCcCCCcCCCccCCCCCCCCCC
Q 038036 561 EIPLSIIDLHFLSSFSVANNDLQGQIPSGGQFLTFPSSSFEGNPRFCGDI 610 (638)
Q Consensus 561 ~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~ 610 (638)
. | +..+++|+.|++++|++.+.- ....+..+....+.+++..|+.+
T Consensus 333 ~-~--~~~~~~L~~L~l~~N~~~~~~-~~~~~~~~~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 333 L-K--LSTHHTLKNLTLSHNDWDCNS-LRALFRNVARPAVDDADQHCKID 378 (390)
T ss_dssp C-C--CCTTCCCSEEECCSSCEEHHH-HHHHTTTCCTTTBCCCCSCCCTT
T ss_pred e-C--chhhccCCEEEcCCCCccchh-HHHHHHHHHhhcccccCceeccc
Confidence 4 3 677889999999999998542 22335667777788888888753
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3e-33 Score=298.28 Aligned_cols=353 Identities=21% Similarity=0.201 Sum_probs=294.0
Q ss_pred cCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeec
Q 038036 140 LKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQS 219 (638)
Q Consensus 140 L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~ 219 (638)
-+.++.+++.++ .+|..+. +++++|++++|.+.+..+..|..+++|++|++++|.+.+..|..|.++++|++|++++
T Consensus 13 ~~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 13 DRAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TTEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 357888888887 5676553 6899999999999987788999999999999999999988899999999999999999
Q ss_pred CcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCcccccc
Q 038036 220 NKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSF 299 (638)
Q Consensus 220 n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~ 299 (638)
|.++...+..|..+++|++|++++|.+.+..+..+.++++|+.|++++|.+.+ +....|..+++|+.|++++|.+++..
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~ 168 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY-ISHRAFSGLNSLEQLTLEKCNLTSIP 168 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCE-ECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccce-eChhhccCCCCCCEEECCCCcCcccC
Confidence 99998777778999999999999999998888899999999999999999984 44457899999999999999999777
Q ss_pred cccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchhh
Q 038036 300 PLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQR 379 (638)
Q Consensus 300 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 379 (638)
+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|....... ...
T Consensus 169 ~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--------------------------~~~-- 220 (477)
T 2id5_A 169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT--------------------------PNC-- 220 (477)
T ss_dssp HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEEC--------------------------TTT--
T ss_pred hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccC--------------------------ccc--
Confidence 7788999999999999999998888889999999999999876542110 000
Q ss_pred hccccCCCCccEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhhc
Q 038036 380 AISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLR 459 (638)
Q Consensus 380 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 459 (638)
....+|++|++++|.+....+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+..|..|.+++
T Consensus 221 ----~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 296 (477)
T 2id5_A 221 ----LYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLN 296 (477)
T ss_dssp ----TTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCT
T ss_pred ----ccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcc
Confidence 0234788888888888876667888999999999999999887778889999999999999999988888888888
Q ss_pred cchhhhccccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCC
Q 038036 460 ALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIP 539 (638)
Q Consensus 460 ~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p 539 (638)
+|+ .|++++|.+++..+..|..+++|++|+|++|++...-+
T Consensus 297 ~L~---------------------------------------~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 297 YLR---------------------------------------VLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR 337 (477)
T ss_dssp TCC---------------------------------------EEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred cCC---------------------------------------EEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence 876 68999999987777788999999999999999873322
Q ss_pred hhhhCCCCCCeeeCCCCcceecCCccccc
Q 038036 540 DQISQLTNLEGLDLSENNLHGEIPLSIID 568 (638)
Q Consensus 540 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~ 568 (638)
...-...+..+.+.++......|..+.+
T Consensus 338 -~~~~~~~~~~~~~~~~~~~C~~p~~~~g 365 (477)
T 2id5_A 338 -LLWVFRRRWRLNFNRQQPTCATPEFVQG 365 (477)
T ss_dssp -GHHHHTTTTSSCCTTCCCBEEESGGGTT
T ss_pred -hHhHHhhhhccccCccCceeCCchHHcC
Confidence 1111233445666677666656655443
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1e-32 Score=286.09 Aligned_cols=350 Identities=18% Similarity=0.133 Sum_probs=204.6
Q ss_pred CCCCCCCCCCcC-ccceEECCCCCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcC
Q 038036 15 PLNWSFSTDCCF-WEGIKCDSKARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLS 93 (638)
Q Consensus 15 ~~~w~~~~~~~~-w~g~~c~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls 93 (638)
+++|..+.+||. |.+..|.... +.+............-..++++++|++++|.++ .+|...|..+++|++|+++
T Consensus 3 ~~~~~~~~~C~~~~~~~~c~~~~----~~i~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~ 77 (390)
T 3o6n_A 3 VKPRQPEYKCIDSNLQYDCVFYD----VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLN 77 (390)
T ss_dssp ----CCEECBCC------EEEES----CEECSSCCCCEESCSSGGGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECT
T ss_pred cCCCCCccceehhhhhhccceee----eeeecccccccccccccccCCceEEEecCCchh-hCChhHhcccccCcEEECC
Confidence 578988888875 5555452111 111111111111111223466666666666655 4554444444445555555
Q ss_pred CccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEccccc
Q 038036 94 YNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNY 173 (638)
Q Consensus 94 ~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~ 173 (638)
+|.++ +..+..+. .+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 78 ~n~i~-------------------------~~~~~~~~----~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 128 (390)
T 3o6n_A 78 DLQIE-------------------------EIDTYAFA----YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND 128 (390)
T ss_dssp TSCCC-------------------------EECTTTTT----TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccc-------------------------ccChhhcc----CCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCc
Confidence 44444 33332222 45555555555555555445555566666666666666
Q ss_pred ccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchh
Q 038036 174 LSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQS 253 (638)
Q Consensus 174 ~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~ 253 (638)
+....+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++. .+..+++|++|++++|.++.
T Consensus 129 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~----- 200 (390)
T 3o6n_A 129 LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST----- 200 (390)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-----
T ss_pred cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-----
Confidence 5532222345566666666666666655555566666666666666666543 24455666666666666552
Q ss_pred hcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCchhhhcCCCC
Q 038036 254 LMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESL 333 (638)
Q Consensus 254 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L 333 (638)
+...+.|+.|++++|.+.. ++. ...++|+.|++++|.+++. ..+..+++|++|++++|.+.+..+..+..+++|
T Consensus 201 ~~~~~~L~~L~l~~n~l~~-~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 274 (390)
T 3o6n_A 201 LAIPIAVEELDASHNSINV-VRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 274 (390)
T ss_dssp EECCSSCSEEECCSSCCCE-EEC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC
T ss_pred cCCCCcceEEECCCCeeee-ccc---cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccC
Confidence 2233567777777776653 222 2246677777777777642 456777778888888887777667777777788
Q ss_pred CEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchHHhhcCCCC
Q 038036 334 SYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKL 413 (638)
Q Consensus 334 ~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L 413 (638)
+.|++++|.++.++... . .+++|++|++++|.+. .+|..+..+++|
T Consensus 275 ~~L~L~~n~l~~~~~~~---~------------------------------~l~~L~~L~L~~n~l~-~~~~~~~~l~~L 320 (390)
T 3o6n_A 275 ERLYISNNRLVALNLYG---Q------------------------------PIPTLKVLDLSHNHLL-HVERNQPQFDRL 320 (390)
T ss_dssp CEEECCSSCCCEEECSS---S------------------------------CCTTCCEEECCSSCCC-CCGGGHHHHTTC
T ss_pred CEEECCCCcCcccCccc---C------------------------------CCCCCCEEECCCCcce-ecCccccccCcC
Confidence 88888877776543211 1 3466777777777666 345567788999
Q ss_pred CEEecCCCccccCcCccccCCCCCCEEEccCCcCcc
Q 038036 414 QVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISG 449 (638)
Q Consensus 414 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~ 449 (638)
++|++++|+++.. + +..+++|++|++++|++..
T Consensus 321 ~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 321 ENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp SEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred CEEECCCCcccee-C--chhhccCCEEEcCCCCccc
Confidence 9999999999854 3 6778999999999999874
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.7e-33 Score=307.79 Aligned_cols=335 Identities=18% Similarity=0.164 Sum_probs=188.9
Q ss_pred CCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEE
Q 038036 161 CSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQ 240 (638)
Q Consensus 161 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 240 (638)
+.+++.++++++.+....+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..|+.+++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 34555566665555533333345555556666655555554444555555555555555555555444455555555555
Q ss_pred ccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCccc
Q 038036 241 LHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIV 320 (638)
Q Consensus 241 L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~ 320 (638)
+++|.++...+..+.++++|+.|++++|.+ ++..|..+..+++|++|++++|.++
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l-------------------------~~~~~~~~~~l~~L~~L~L~~N~l~ 184 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNL-------------------------ERIEDDTFQATTSLQNLQLSSNRLT 184 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCC-------------------------CBCCTTTTTTCTTCCEEECTTSCCS
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcC-------------------------CCCChhhhhcCCcCcEEECcCCCCC
Confidence 555555533333344455555555555544 4434444444444444444444444
Q ss_pred ccCchhhhcCCCCCEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCccc
Q 038036 321 GQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIK 400 (638)
Q Consensus 321 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 400 (638)
+.. +..+++|+.|++++|.+..++ ..+.|+.|++++|.+....+ ..+++|+.|++++|.+.
T Consensus 185 ~~~---~~~l~~L~~L~l~~n~l~~l~-------~~~~L~~L~ls~n~l~~~~~---------~~~~~L~~L~L~~n~l~ 245 (597)
T 3oja_B 185 HVD---LSLIPSLFHANVSYNLLSTLA-------IPIAVEELDASHNSINVVRG---------PVNVELTILKLQHNNLT 245 (597)
T ss_dssp BCC---GGGCTTCSEEECCSSCCSEEE-------CCTTCSEEECCSSCCCEEEC---------SCCSCCCEEECCSSCCC
T ss_pred CcC---hhhhhhhhhhhcccCcccccc-------CCchhheeeccCCccccccc---------ccCCCCCEEECCCCCCC
Confidence 321 233445555555555443221 12233333333333321111 01234445555555444
Q ss_pred ccchHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhhccchhhhccccCCCCCCccccc
Q 038036 401 GQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLF 480 (638)
Q Consensus 401 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~ 480 (638)
+. ..+..+++|+.|++++|.+.+..|..+..+++|+.|+|++|.+
T Consensus 246 ~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l--------------------------------- 290 (597)
T 3oja_B 246 DT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL--------------------------------- 290 (597)
T ss_dssp CC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCC---------------------------------
T ss_pred CC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCC---------------------------------
Confidence 32 3344455555555555555544455555555555555555544
Q ss_pred ccccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCccee
Q 038036 481 VPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHG 560 (638)
Q Consensus 481 ~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~ 560 (638)
++ +|..+..+++|++|+|++|.++ .+|..+..+++|+.|+|++|.+++
T Consensus 291 ------------------------------~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~ 338 (597)
T 3oja_B 291 ------------------------------VA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT 338 (597)
T ss_dssp ------------------------------CE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC
T ss_pred ------------------------------CC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCC
Confidence 42 3445567889999999999998 688888999999999999999985
Q ss_pred cCCccccccCCCCeEecccCceeecCCCCCcCCCcCCCccCCCCCCCCCC
Q 038036 561 EIPLSIIDLHFLSSFSVANNDLQGQIPSGGQFLTFPSSSFEGNPRFCGDI 610 (638)
Q Consensus 561 ~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~ 610 (638)
. | +..+++|+.|++++|++.+..+ ...+..+....+.+++..|+..
T Consensus 339 ~-~--~~~~~~L~~L~l~~N~~~~~~~-~~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 339 L-K--LSTHHTLKNLTLSHNDWDCNSL-RALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp C-C--CCTTCCCSEEECCSSCEEHHHH-HHHTTTCCTTTBCCCCCCCCTT
T ss_pred c-C--hhhcCCCCEEEeeCCCCCChhH-HHHHHHHhhhccccccccCCcc
Confidence 4 3 6778899999999999986532 2345667777888999999863
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.2e-31 Score=273.54 Aligned_cols=78 Identities=28% Similarity=0.317 Sum_probs=55.4
Q ss_pred eEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecccCc
Q 038036 502 AIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANND 581 (638)
Q Consensus 502 ~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~ 581 (638)
.|++++|.+++. ..+..+++|++|++++|.+++..|..+..+++|+.|++++|++++..| +..+++|++|++++|+
T Consensus 269 ~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 269 MLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQV 344 (347)
T ss_dssp EEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC-
T ss_pred EEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhc
Confidence 344555544432 246677888888888888887777788888888888888888886655 7778888888888888
Q ss_pred ee
Q 038036 582 LQ 583 (638)
Q Consensus 582 l~ 583 (638)
++
T Consensus 345 i~ 346 (347)
T 4fmz_A 345 IK 346 (347)
T ss_dssp --
T ss_pred cc
Confidence 75
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=9.2e-32 Score=294.07 Aligned_cols=349 Identities=18% Similarity=0.143 Sum_probs=206.2
Q ss_pred CCCCCCCCCCCcC----ccceEECCCCCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecE
Q 038036 14 PPLNWSFSTDCCF----WEGIKCDSKARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLET 89 (638)
Q Consensus 14 ~~~~w~~~~~~~~----w~g~~c~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~ 89 (638)
.+++|..+.+||. |.++.|+ ..++........ ...-..+++++.+++++|.+. .+|...|
T Consensus 8 ~l~~~~~~~~C~~~~~~~~c~~~~-----~~i~~~~~~~~~--~~~~l~l~~l~~l~l~~~~l~-~lp~~~~-------- 71 (597)
T 3oja_B 8 NVKPRQPEYKCIDSNLQYDCVFYD-----VHIDMQTQDVYF--GFEDITLNNQKIVTFKNSTMR-KLPAALL-------- 71 (597)
T ss_dssp ---CCCSEECCCCC--CCSEEECS-----CEECSSCCCCEE--SCSSGGGCCCSEEEESSCEES-EECTHHH--------
T ss_pred cccCCCCCCcCcccCcCceeEecC-----ceeccccccccc--CcccccCCCceEEEeeCCCCC-CcCHHHH--------
Confidence 4678988888874 5554443 111111111111 111123455666666665554 3444444
Q ss_pred EEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEc
Q 038036 90 LDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRA 169 (638)
Q Consensus 90 L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l 169 (638)
..+++|++|+|++|.+.+..+..+. .+++|++|++++|.+++..+..|+.+++|++|++
T Consensus 72 -----------------~~l~~L~~L~L~~n~l~~~~~~~~~----~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 72 -----------------DSFRQVELLNLNDLQIEEIDTYAFA----YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp -----------------HHCCCCSEEECTTSCCCEECTTTTT----TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred -----------------ccCCCCcEEECCCCCCCCCChHHhc----CCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 4445555555555554443333222 4555556666655555555555556666666666
Q ss_pred ccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCC
Q 038036 170 GFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGF 249 (638)
Q Consensus 170 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~ 249 (638)
++|.+....+..|..+++|++|++++|.+.+..|..+..+++|++|++++|.+++. .+..+++|+.|++++|.+++
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~- 206 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST- 206 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSE-
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcccc-
Confidence 66665533333345566666666666666655555566666666666666665543 23445666666666665552
Q ss_pred cchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCchhhhc
Q 038036 250 LPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILA 329 (638)
Q Consensus 250 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 329 (638)
+...+.|+.|++++|.+.. ++. ...++|+.|++++|.+++ +..+..+++|+.|++++|.+.+..|..+..
T Consensus 207 ----l~~~~~L~~L~ls~n~l~~-~~~---~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 276 (597)
T 3oja_B 207 ----LAIPIAVEELDASHNSINV-VRG---PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVK 276 (597)
T ss_dssp ----EECCTTCSEEECCSSCCCE-EEC---SCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred ----ccCCchhheeeccCCcccc-ccc---ccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcC
Confidence 2334566677777766652 221 122567777777777764 356677777777777777777777777777
Q ss_pred CCCCCEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchHHhhc
Q 038036 330 LESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLAR 409 (638)
Q Consensus 330 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 409 (638)
+++|+.|++++|.++.++... . .+++|+.|++++|.+. .+|..+..
T Consensus 277 l~~L~~L~Ls~N~l~~l~~~~---~------------------------------~l~~L~~L~Ls~N~l~-~i~~~~~~ 322 (597)
T 3oja_B 277 MQRLERLYISNNRLVALNLYG---Q------------------------------PIPTLKVLDLSHNHLL-HVERNQPQ 322 (597)
T ss_dssp CSSCCEEECTTSCCCEEECSS---S------------------------------CCTTCCEEECCSSCCC-CCGGGHHH
T ss_pred ccCCCEEECCCCCCCCCCccc---c------------------------------cCCCCcEEECCCCCCC-ccCccccc
Confidence 777888888777776543211 1 3456667777777666 45666778
Q ss_pred CCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccc
Q 038036 410 LKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGE 450 (638)
Q Consensus 410 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~ 450 (638)
+++|+.|++++|.+.+. + +..+++|+.|++++|++.+.
T Consensus 323 l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 323 FDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp HTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred CCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCCh
Confidence 88999999999998754 2 66788999999999988743
No 41
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=4.5e-31 Score=269.30 Aligned_cols=305 Identities=26% Similarity=0.365 Sum_probs=163.2
Q ss_pred CCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEE
Q 038036 136 SLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSML 215 (638)
Q Consensus 136 ~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L 215 (638)
.+++|++|+++++.+.. ++ .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.+... ..+..+++|++|
T Consensus 42 ~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L 115 (347)
T 4fmz_A 42 ELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITDI--SALQNLTNLREL 115 (347)
T ss_dssp HHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred hcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEE
Confidence 45666666666666652 22 25555666666666665552 222 55555566666655555532 234555555555
Q ss_pred EeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCcc
Q 038036 216 DLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNF 295 (638)
Q Consensus 216 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i 295 (638)
++++|.+.+..+ +..+++|++|++++|...... ..+..+++|+.|++++|.+.
T Consensus 116 ~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~------------------------ 168 (347)
T 4fmz_A 116 YLNEDNISDISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVK------------------------ 168 (347)
T ss_dssp ECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCC------------------------
T ss_pred ECcCCcccCchh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcC------------------------
Confidence 555555543311 444455555555554333222 22444444444444444443
Q ss_pred cccccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCc
Q 038036 296 TGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPD 375 (638)
Q Consensus 296 ~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 375 (638)
+..+ +..+++|++|++++|.+.+..+ +..+++|+.+++++|.+..++. +.
T Consensus 169 -~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~----~~--------------------- 218 (347)
T 4fmz_A 169 -DVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP----VA--------------------- 218 (347)
T ss_dssp -CCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG----GG---------------------
T ss_pred -Cchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch----hh---------------------
Confidence 2111 3333444444444444432211 3344444444444444433221 11
Q ss_pred chhhhccccCCCCccEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhh
Q 038036 376 ENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEF 455 (638)
Q Consensus 376 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~ 455 (638)
.+++|++|++++|.+.+..+ +..+++|++|++++|.+++. ..+..+++|++|++++|.+.+. ..+
T Consensus 219 ---------~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~ 283 (347)
T 4fmz_A 219 ---------NMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVL 283 (347)
T ss_dssp ---------GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGG
T ss_pred ---------cCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhh
Confidence 23344444444444443322 55566666666666666543 3466666777777777766543 234
Q ss_pred hhhccchhhhccccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeee
Q 038036 456 CGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFS 535 (638)
Q Consensus 456 ~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 535 (638)
..+++|+ .|++++|.+++..+..+..+++|++|++++|+++
T Consensus 284 ~~l~~L~---------------------------------------~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 324 (347)
T 4fmz_A 284 NNLSQLN---------------------------------------SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324 (347)
T ss_dssp GGCTTCS---------------------------------------EEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC
T ss_pred cCCCCCC---------------------------------------EEECcCCcCCCcChhHhhccccCCEEEccCCccc
Confidence 4444444 5677777777677777888889999999999988
Q ss_pred ecCChhhhCCCCCCeeeCCCCcce
Q 038036 536 GEIPDQISQLTNLEGLDLSENNLH 559 (638)
Q Consensus 536 ~~~p~~~~~l~~L~~L~Ls~n~l~ 559 (638)
+..| +..+++|++|++++|.++
T Consensus 325 ~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 325 DIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCGG--GGGCTTCSEESSSCC---
T ss_pred cccC--hhhhhccceeehhhhccc
Confidence 6555 788899999999999876
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.6e-32 Score=274.77 Aligned_cols=256 Identities=30% Similarity=0.532 Sum_probs=204.0
Q ss_pred CccEEecCCCcccc--cccccCcCCCCCCEEEcCC-CcccccCchhhhcCCCCCEEEccCCcCCCCccccccccCCCCCc
Q 038036 284 NLHTIDLGNNNFTG--SFPLTLTSCKVLTAIRLSR-NKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLR 360 (638)
Q Consensus 284 ~L~~L~l~~n~i~~--~~~~~l~~~~~L~~L~L~~-n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~ 360 (638)
+++.|++++|.+.+ .+|..+..+++|++|++++ |.+.+.+|..+..+++|++|++++|.++.
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~--------------- 115 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG--------------- 115 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE---------------
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC---------------
Confidence 45555555555555 4555555566666666653 55555555555556666666665555541
Q ss_pred EEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCccccCCC-CCCE
Q 038036 361 MLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMP-NLFY 439 (638)
Q Consensus 361 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~ 439 (638)
..+... ..+++|++|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..++ +|++
T Consensus 116 -----------~~p~~~------~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~ 178 (313)
T 1ogq_A 116 -----------AIPDFL------SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTS 178 (313)
T ss_dssp -----------ECCGGG------GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCE
T ss_pred -----------cCCHHH------hCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcE
Confidence 111111 1345666667777777777778888899999999999999988898898888 9999
Q ss_pred EEccCCcCccccchhhhhhccchhhhccccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCchhhh
Q 038036 440 IDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIG 519 (638)
Q Consensus 440 L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~ 519 (638)
|++++|.+.+.+|..+..++ |+ .|++++|.+++..|..+.
T Consensus 179 L~L~~N~l~~~~~~~~~~l~-L~---------------------------------------~L~Ls~N~l~~~~~~~~~ 218 (313)
T 1ogq_A 179 MTISRNRLTGKIPPTFANLN-LA---------------------------------------FVDLSRNMLEGDASVLFG 218 (313)
T ss_dssp EECCSSEEEEECCGGGGGCC-CS---------------------------------------EEECCSSEEEECCGGGCC
T ss_pred EECcCCeeeccCChHHhCCc-cc---------------------------------------EEECcCCcccCcCCHHHh
Confidence 99999999988888887765 54 699999999999999999
Q ss_pred cCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecccCceeecCCCCCcCCCcCCCc
Q 038036 520 NLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPSGGQFLTFPSSS 599 (638)
Q Consensus 520 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~ 599 (638)
.+++|++|+|++|.+++.+|. +..+++|++|++++|++++.+|..+..+++|+.|++++|+++|.+|..+.+.++..+.
T Consensus 219 ~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~ 297 (313)
T 1ogq_A 219 SDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSA 297 (313)
T ss_dssp TTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGG
T ss_pred cCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHH
Confidence 999999999999999966665 8899999999999999999999999999999999999999999999998899999999
Q ss_pred cCCCCCCCCCCCC
Q 038036 600 FEGNPRFCGDIVE 612 (638)
Q Consensus 600 ~~~n~~lc~~~~~ 612 (638)
+.+||++||.++.
T Consensus 298 l~~N~~lc~~p~~ 310 (313)
T 1ogq_A 298 YANNKCLCGSPLP 310 (313)
T ss_dssp TCSSSEEESTTSS
T ss_pred hcCCCCccCCCCC
Confidence 9999999998775
No 43
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=2.7e-33 Score=297.52 Aligned_cols=396 Identities=16% Similarity=0.106 Sum_probs=249.7
Q ss_pred CCCEEECCCCCCCCCCccccccccceecEEEcCCccccccc---cHHHHhcCCCCcEEEcccCcCcccCCCccccCCCC-
Q 038036 61 HLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQF---LSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKS- 136 (638)
Q Consensus 61 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~---~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~- 136 (638)
+|++|++++|.+++......|..+++|++|++++|.+++.. ....+..+++|++|++++|.+.+..+..+...+..
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 83 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence 44555555555542222223445555666666666555321 11233445666666666666554322211111111
Q ss_pred CCCcCEEEccCCcCCc----cCCccCCCCCCCcEEEcccccccccCCcccc-----CCCCCCEEEccCCCCcccc----C
Q 038036 137 LSSLKILDFSYNDFSG----QLPPGLGNCSKLQTFRAGFNYLSGSIPDDIS-----AATSLQEISLPGNQLSGAI----S 203 (638)
Q Consensus 137 l~~L~~L~ls~n~i~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~-----~l~~L~~L~L~~n~i~~~~----~ 203 (638)
.++|++|++++|.++. .++..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.++... +
T Consensus 84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 163 (461)
T 1z7x_W 84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence 1157777777777663 3466677777777777777776644333322 2456888888888777532 4
Q ss_pred ccccCCCCCCEEEeecCcCcccCCcccC-----CCCCCCEEEccCCCCCCC----cchhhcCCCCCcEEEccCccccccc
Q 038036 204 DGVGNLTSLSMLDLQSNKFSGLIPQDIG-----KLTNLKSLQLHTNSLSGF----LPQSLMNCTNLITLNLRINNFRGDL 274 (638)
Q Consensus 204 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~L~~n~l~~~~ 274 (638)
..+..+++|++|++++|.+....+..+. ..++|++|++++|.++.. ++..+..+++|++|++++|.+.+..
T Consensus 164 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 243 (461)
T 1z7x_W 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 243 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHH
Confidence 4556677888888888877654333332 256888888888888753 4667778888999999888876421
Q ss_pred ----CcccccCCCCccEEecCCCccccc----ccccCcCCCCCCEEEcCCCcccccCchhhhc-----CCCCCEEEccCC
Q 038036 275 ----SAYNFSTLHNLHTIDLGNNNFTGS----FPLTLTSCKVLTAIRLSRNKIVGQISPEILA-----LESLSYLSITNN 341 (638)
Q Consensus 275 ----~~~~~~~~~~L~~L~l~~n~i~~~----~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~-----l~~L~~L~L~~n 341 (638)
....+..+++|+.|++++|.+++. ++..+..+++|++|++++|.+.+..+..+.. .++|+.|++++|
T Consensus 244 ~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 323 (461)
T 1z7x_W 244 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC 323 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCC
Confidence 122334578889999999888753 5666777888999999999887654444432 268999999998
Q ss_pred cCCCCcc--ccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccc----cchHHhhcCCCCCE
Q 038036 342 NFSNITG--AIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKG----QIPTWLARLKKLQV 415 (638)
Q Consensus 342 ~l~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~ 415 (638)
.++.... ....+..+++|+.|++++|.+.+..+......+. ...++|++|++++|.+++ .++..+..+++|++
T Consensus 324 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~-~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~ 402 (461)
T 1z7x_W 324 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLG-QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE 402 (461)
T ss_dssp CCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHT-STTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCE
T ss_pred CCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHc-CCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccE
Confidence 8775421 2244566788888888888776543332222111 125689999999998886 67788888999999
Q ss_pred EecCCCccccCcCcc----cc-CCCCCCEEEccCCcCccccchhhhh
Q 038036 416 LDLGSNQITGSIPGW----LG-NMPNLFYIDLSYNSISGEFPKEFCG 457 (638)
Q Consensus 416 L~L~~n~l~~~~~~~----l~-~l~~L~~L~L~~n~i~~~~~~~~~~ 457 (638)
|++++|++++..... +. ..++|+.|++.++.+....++.+..
T Consensus 403 L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~ 449 (461)
T 1z7x_W 403 LDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQA 449 (461)
T ss_dssp EECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHH
T ss_pred EECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHHHHH
Confidence 999999887542211 21 2457888888888776554444433
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.2e-29 Score=256.57 Aligned_cols=268 Identities=22% Similarity=0.293 Sum_probs=141.1
Q ss_pred CCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEec
Q 038036 211 SLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDL 290 (638)
Q Consensus 211 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l 290 (638)
.+++|++++|.+++..+..|..+++|++|++++|.+++..|..+.++++|++|++++|.+. .++... .++|+.|++
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~---~~~L~~L~l 128 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM---PKTLQELRV 128 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSC---CTTCCEEEC
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhh---cccccEEEC
Confidence 4455555555554444444555555555555555555444555555555555555555554 233211 145566666
Q ss_pred CCCcccccccccCcCCCCCCEEEcCCCcccc--cCchhhhcCCCCCEEEccCCcCCCCccccccccCCCCCcEEEcCCCc
Q 038036 291 GNNNFTGSFPLTLTSCKVLTAIRLSRNKIVG--QISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKF 368 (638)
Q Consensus 291 ~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~ 368 (638)
++|.+++..+..+..+++|++|++++|.+.. ..+..+..+++|+.|++++|.++.++..
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~------------------- 189 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG------------------- 189 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS-------------------
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcc-------------------
Confidence 6666555444555556666666666665542 3445566666666666666665544321
Q ss_pred ccccCCcchhhhccccCCCCccEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCc
Q 038036 369 FHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSIS 448 (638)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~ 448 (638)
.+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 190 ----------------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 253 (330)
T 1xku_A 190 ----------------LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253 (330)
T ss_dssp ----------------CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS
T ss_pred ----------------ccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc
Confidence 1133444444444444333444444445555555555544444444444444444444444443
Q ss_pred cccchhhhhhccchhhhccccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeee
Q 038036 449 GEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLD 528 (638)
Q Consensus 449 ~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~ 528 (638)
.+|..+..+++|++|+
T Consensus 254 ----------------------------------------------------------------~lp~~l~~l~~L~~L~ 269 (330)
T 1xku_A 254 ----------------------------------------------------------------KVPGGLADHKYIQVVY 269 (330)
T ss_dssp ----------------------------------------------------------------SCCTTTTTCSSCCEEE
T ss_pred ----------------------------------------------------------------cCChhhccCCCcCEEE
Confidence 3444555666677777
Q ss_pred CCCCeeeecCChhhhC------CCCCCeeeCCCCccee--cCCccccccCCCCeEecccCc
Q 038036 529 LSLNNFSGEIPDQISQ------LTNLEGLDLSENNLHG--EIPLSIIDLHFLSSFSVANND 581 (638)
Q Consensus 529 Ls~n~l~~~~p~~~~~------l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~l~~n~ 581 (638)
+++|.+++..+..|.. .+.|+.|++++|.+.. ..|..+..+..++.+++++|+
T Consensus 270 l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 270 LHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 7777766554444432 3567777777777653 445667777777777777764
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=5e-30 Score=259.56 Aligned_cols=287 Identities=22% Similarity=0.254 Sum_probs=145.8
Q ss_pred CCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccC
Q 038036 188 LQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRI 267 (638)
Q Consensus 188 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~ 267 (638)
++.++++++.+. .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+.++++|++|++++
T Consensus 35 l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 35 LRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp TTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred CCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 444444444444 223322 13455555555555444444455555555555555555544445555555555555555
Q ss_pred cccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccc--cCchhhhcCCCCCEEEccCCcCCC
Q 038036 268 NNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVG--QISPEILALESLSYLSITNNNFSN 345 (638)
Q Consensus 268 n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~--~~~~~l~~l~~L~~L~L~~n~l~~ 345 (638)
|.+. .++...+ ++|++|++++|.+.+..+..+..+++|++|++++|.++. ..+..+..+ +|+.|++++|.++.
T Consensus 112 n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 112 NHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 5554 2332111 455555555555554444445555666666666665542 333444444 56666666665554
Q ss_pred CccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchHHhhcCCCCCEEecCCCcccc
Q 038036 346 ITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITG 425 (638)
Q Consensus 346 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~ 425 (638)
++.. .+++|++|++++|.+.+..+..+..+++|++|++++|.+++
T Consensus 187 l~~~-----------------------------------~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~ 231 (332)
T 2ft3_A 187 IPKD-----------------------------------LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM 231 (332)
T ss_dssp CCSS-----------------------------------SCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC
T ss_pred cCcc-----------------------------------ccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCc
Confidence 3321 11233333333333333333334444444444444444444
Q ss_pred CcCccccCCCCCCEEEccCCcCccccchhhhhhccchhhhccccCCCCCCcccccccccchhhhhcccccccCCCCeEEc
Q 038036 426 SIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYL 505 (638)
Q Consensus 426 ~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~l 505 (638)
..+..+..+++|++|++++|+
T Consensus 232 ~~~~~~~~l~~L~~L~L~~N~----------------------------------------------------------- 252 (332)
T 2ft3_A 232 IENGSLSFLPTLRELHLDNNK----------------------------------------------------------- 252 (332)
T ss_dssp CCTTGGGGCTTCCEEECCSSC-----------------------------------------------------------
T ss_pred CChhHhhCCCCCCEEECCCCc-----------------------------------------------------------
Confidence 333344444444444444444
Q ss_pred cCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhC------CCCCCeeeCCCCcce--ecCCccccccCCCCeEec
Q 038036 506 RNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQ------LTNLEGLDLSENNLH--GEIPLSIIDLHFLSSFSV 577 (638)
Q Consensus 506 s~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~------l~~L~~L~Ls~n~l~--~~~p~~l~~l~~L~~L~l 577 (638)
++ .+|..+..+++|++|++++|.+++..+..|.. ...|+.|++++|++. ...|..+..++.|+.+++
T Consensus 253 ----l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l 327 (332)
T 2ft3_A 253 ----LS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQF 327 (332)
T ss_dssp ----CC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC
T ss_pred ----Ce-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhc
Confidence 43 44555666677777777777776555555543 356777777777776 456667777777777777
Q ss_pred ccCc
Q 038036 578 ANND 581 (638)
Q Consensus 578 ~~n~ 581 (638)
++|+
T Consensus 328 ~~n~ 331 (332)
T 2ft3_A 328 GNYK 331 (332)
T ss_dssp ----
T ss_pred cccc
Confidence 7764
No 46
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.3e-32 Score=292.31 Aligned_cols=386 Identities=19% Similarity=0.156 Sum_probs=194.0
Q ss_pred CCcCEEEccCCcCCccCCc-cCCCCCCCcEEEcccccccc----cCCccccCCCCCCEEEccCCCCccccCccc-cCCC-
Q 038036 138 SSLKILDFSYNDFSGQLPP-GLGNCSKLQTFRAGFNYLSG----SIPDDISAATSLQEISLPGNQLSGAISDGV-GNLT- 210 (638)
Q Consensus 138 ~~L~~L~ls~n~i~~~~~~-~l~~l~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l-~~l~- 210 (638)
++|++|+++++.++..... .+..+++|++|++++|.+.. .++..+..+++|++|++++|.+....+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 4566666666666532222 24455666666666665552 223444555666666666665543222111 1222
Q ss_pred ---CCCEEEeecCcCcc----cCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCC
Q 038036 211 ---SLSMLDLQSNKFSG----LIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLH 283 (638)
Q Consensus 211 ---~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 283 (638)
+|++|++++|.++. .++..+..+++|++|++++|.+++..+..+.. ......+
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~--------------------~l~~~~~ 142 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE--------------------GLLDPQC 142 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHH--------------------HHTSTTC
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHH--------------------HHhcCCC
Confidence 35555555555442 22334444444555555544443222221111 0111233
Q ss_pred CccEEecCCCccccc----ccccCcCCCCCCEEEcCCCcccccCchhhh-----cCCCCCEEEccCCcCCCCcc--cccc
Q 038036 284 NLHTIDLGNNNFTGS----FPLTLTSCKVLTAIRLSRNKIVGQISPEIL-----ALESLSYLSITNNNFSNITG--AIRI 352 (638)
Q Consensus 284 ~L~~L~l~~n~i~~~----~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~-----~l~~L~~L~L~~n~l~~~~~--~~~~ 352 (638)
+|++|++++|.+++. ++..+..+++|++|++++|.+.+..+..+. ..++|+.|++++|.++.... ....
T Consensus 143 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 222 (461)
T 1z7x_W 143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI 222 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH
T ss_pred cceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHH
Confidence 455555555544432 233334445555555555555433222222 13455555555555543210 1122
Q ss_pred ccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCccccc----chHHhhcCCCCCEEecCCCccccCcC
Q 038036 353 LMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQ----IPTWLARLKKLQVLDLGSNQITGSIP 428 (638)
Q Consensus 353 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~ 428 (638)
+..+++|+.|++++|.+.+......... ....+++|++|++++|.++.. ++..+..+++|++|++++|.+.+..+
T Consensus 223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~-~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 301 (461)
T 1z7x_W 223 VASKASLRELALGSNKLGDVGMAELCPG-LLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHH-HTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH
T ss_pred HHhCCCccEEeccCCcCChHHHHHHHHH-HhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHH
Confidence 3344555555555554433211110000 001356677777777766653 45566667777788887777764333
Q ss_pred cccc-----CCCCCCEEEccCCcCccc----cchhhhhhccchhhhccccCCCCCCcccccccccchhhhhcccccccCC
Q 038036 429 GWLG-----NMPNLFYIDLSYNSISGE----FPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSL 499 (638)
Q Consensus 429 ~~l~-----~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~ 499 (638)
..+. ..++|++|++++|.+++. ++..+..++.|+
T Consensus 302 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~------------------------------------- 344 (461)
T 1z7x_W 302 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLL------------------------------------- 344 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCC-------------------------------------
T ss_pred HHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCcc-------------------------------------
Confidence 2222 235777788877777654 233344444444
Q ss_pred CCeEEccCCcccccCchhhhc-----CcCCCeeeCCCCeeee----cCChhhhCCCCCCeeeCCCCcceecCCcccc---
Q 038036 500 PPAIYLRNNSLNGSIPIEIGN-----LKFLHVLDLSLNNFSG----EIPDQISQLTNLEGLDLSENNLHGEIPLSII--- 567 (638)
Q Consensus 500 ~~~L~ls~n~l~~~~~~~l~~-----l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~--- 567 (638)
.|++++|.+++..+..+.. .++|++|+|++|.+++ .+|..+..+++|++|++++|++++.....+.
T Consensus 345 --~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l 422 (461)
T 1z7x_W 345 --ELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 422 (461)
T ss_dssp --EEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHH
T ss_pred --EEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHh
Confidence 5677777766554444432 5677777777777765 5666777777777777777777643211111
Q ss_pred --ccCCCCeEecccCcee
Q 038036 568 --DLHFLSSFSVANNDLQ 583 (638)
Q Consensus 568 --~l~~L~~L~l~~n~l~ 583 (638)
....|+.|++.++...
T Consensus 423 ~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 423 RQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp TSTTCCCCEEECTTCCCC
T ss_pred ccCCcchhheeecccccC
Confidence 1234666666665554
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.4e-28 Score=248.68 Aligned_cols=267 Identities=21% Similarity=0.242 Sum_probs=116.7
Q ss_pred EEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEEcc
Q 038036 39 THLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVS 118 (638)
Q Consensus 39 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls 118 (638)
+.++++++.+. .+|..+. +.+++|++++|.++ .++...|..+++|++|+|++|.+++..|. .+..+++|++|+++
T Consensus 34 ~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 34 RVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPG-AFAPLVKLERLYLS 108 (330)
T ss_dssp TEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEECC
T ss_pred eEEEecCCCcc-ccCccCC--CCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHH-HhcCCCCCCEEECC
Confidence 34444444443 2333332 45566666666655 34444455555555555555555533232 22334555555555
Q ss_pred cCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCC
Q 038036 119 HNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQL 198 (638)
Q Consensus 119 ~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i 198 (638)
+|.++.. +... .++|++|++++|.+++..+..+..+++|++|++++|.+..
T Consensus 109 ~n~l~~l-~~~~------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---------------------- 159 (330)
T 1xku_A 109 KNQLKEL-PEKM------PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS---------------------- 159 (330)
T ss_dssp SSCCSBC-CSSC------CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG----------------------
T ss_pred CCcCCcc-Chhh------cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc----------------------
Confidence 5544421 1111 1344444444444443333334444444444444444421
Q ss_pred ccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCccc
Q 038036 199 SGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYN 278 (638)
Q Consensus 199 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 278 (638)
.+..+..+..+++|++|++++|.++.. |..+. ++|++|++++|.+++..+..+.++++|+.|++++|.+.+ ++...
T Consensus 160 ~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~ 235 (330)
T 1xku_A 160 SGIENGAFQGMKKLSYIRIADTNITTI-PQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA-VDNGS 235 (330)
T ss_dssp GGBCTTGGGGCTTCCEEECCSSCCCSC-CSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE-ECTTT
T ss_pred cCcChhhccCCCCcCEEECCCCccccC-Ccccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce-eChhh
Confidence 012233344444444444444444322 22221 344444444444443334444444444444444444442 22223
Q ss_pred ccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCchhhhc------CCCCCEEEccCCcCC
Q 038036 279 FSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILA------LESLSYLSITNNNFS 344 (638)
Q Consensus 279 ~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~------l~~L~~L~L~~n~l~ 344 (638)
+..+++|+.|++++|.++ .+|..+..+++|++|++++|.+++..+..|.. .+.++.+++++|++.
T Consensus 236 ~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 236 LANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp GGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred ccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccc
Confidence 444444444444444444 34444444455555555555444333333321 234455555555544
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=1.3e-28 Score=249.21 Aligned_cols=244 Identities=20% Similarity=0.277 Sum_probs=135.2
Q ss_pred ceecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCC
Q 038036 85 IHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKL 164 (638)
Q Consensus 85 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L 164 (638)
..++.++++++.++ .+|..+ .++|++|++++|.+.+..+..+. ++++|++|++++|.+++..|..+..+++|
T Consensus 33 c~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~----~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 104 (332)
T 2ft3_A 33 CHLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFK----GLQHLYALVLVNNKISKIHEKAFSPLRKL 104 (332)
T ss_dssp EETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTT----TCTTCCEEECCSSCCCEECGGGSTTCTTC
T ss_pred ccCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhh----CCCCCcEEECCCCccCccCHhHhhCcCCC
Confidence 45777777777776 455433 35666777777666654443333 56666666666666665556666666666
Q ss_pred cEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcc--cCCcccCCCCCCCEEEcc
Q 038036 165 QTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSG--LIPQDIGKLTNLKSLQLH 242 (638)
Q Consensus 165 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~ 242 (638)
++|++++|.+. .+|..+. ++|++|++++|.+....+..+..+++|++|++++|.++. ..+..+..+ +|++|+++
T Consensus 105 ~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~ 180 (332)
T 2ft3_A 105 QKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRIS 180 (332)
T ss_dssp CEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCC
T ss_pred CEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECc
Confidence 66666666665 4444433 566666666666665544556666666666666666542 344445554 56666666
Q ss_pred CCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCccccc
Q 038036 243 TNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQ 322 (638)
Q Consensus 243 ~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~ 322 (638)
+|.+++ +|..+. ++|+.|++++|.+.+ ++...+..+++|+.|++++|.+++..+..+..+++|++|++++|.++ .
T Consensus 181 ~n~l~~-l~~~~~--~~L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~ 255 (332)
T 2ft3_A 181 EAKLTG-IPKDLP--ETLNELHLDHNKIQA-IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-R 255 (332)
T ss_dssp SSBCSS-CCSSSC--SSCSCCBCCSSCCCC-CCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-B
T ss_pred CCCCCc-cCcccc--CCCCEEECCCCcCCc-cCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-e
Confidence 666553 333322 455555555555542 22224445555555555555555444444445555555555555554 3
Q ss_pred CchhhhcCCCCCEEEccCCcCCC
Q 038036 323 ISPEILALESLSYLSITNNNFSN 345 (638)
Q Consensus 323 ~~~~l~~l~~L~~L~L~~n~l~~ 345 (638)
+|..+..+++|+.|++++|.++.
T Consensus 256 lp~~l~~l~~L~~L~l~~N~l~~ 278 (332)
T 2ft3_A 256 VPAGLPDLKLLQVVYLHTNNITK 278 (332)
T ss_dssp CCTTGGGCTTCCEEECCSSCCCB
T ss_pred cChhhhcCccCCEEECCCCCCCc
Confidence 44444445555555555554443
No 49
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=3.7e-32 Score=298.31 Aligned_cols=260 Identities=12% Similarity=0.044 Sum_probs=137.7
Q ss_pred CcCccceEECCCCCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCC---CCCccc-----------cccccceecE
Q 038036 24 CCFWEGIKCDSKARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLS---GPLAIN-----------SFSFVIHLET 89 (638)
Q Consensus 24 ~~~w~g~~c~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~---~~~~~~-----------~~~~~~~L~~ 89 (638)
|+.|.++.+... ..+.+.++ .....+..+..+++|++|+++++... +.+|.. .+..++.|++
T Consensus 41 ck~W~~~~~~~~---~~l~~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~ 116 (592)
T 3ogk_B 41 CRRWFKIDSETR---EHVTMALC-YTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKS 116 (592)
T ss_dssp CHHHHHHHHHHC---CEEEESCG-GGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCE
T ss_pred hHHHHHhhhccc---cEEEEeec-cccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCe
Confidence 447888754222 22333332 22233445667889999999875421 112211 1114566778
Q ss_pred EEcCCccccccccHHHHhcCCC-CcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCcc----CCccCCCCCCC
Q 038036 90 LDLSYNSFSGQFLSSFFQLAEN-LITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQ----LPPGLGNCSKL 164 (638)
Q Consensus 90 L~Ls~n~i~~~~~~~~~~~~~~-L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~----~~~~l~~l~~L 164 (638)
|+|++|.+++..+..+...++. |++|++++|.-. ....+......+++|++|++++|.+++. ++..+..+++|
T Consensus 117 L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~--~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L 194 (592)
T 3ogk_B 117 VHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGF--TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSL 194 (592)
T ss_dssp EEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEE--EHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCC
T ss_pred EEeeccEecHHHHHHHHHhccccCcEEECcCCCCc--CHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCc
Confidence 8888777775555544443444 777777776511 0000111112467777777777766543 22233456677
Q ss_pred cEEEccccccc----ccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCc---ccCCcccCCCCCCC
Q 038036 165 QTFRAGFNYLS----GSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFS---GLIPQDIGKLTNLK 237 (638)
Q Consensus 165 ~~L~l~~n~~~----~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~---~~~~~~l~~l~~L~ 237 (638)
++|+++.|.+. ..++..+..+++|++|++++|.+.+ ++..+..+++|++|+++.+... ...+..+..+++|+
T Consensus 195 ~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~ 273 (592)
T 3ogk_B 195 EVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLC 273 (592)
T ss_dssp CEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCC
T ss_pred cEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhcccccc
Confidence 77777777665 2333344566777777777776663 4456666677777776643221 12223444555666
Q ss_pred EEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecC
Q 038036 238 SLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLG 291 (638)
Q Consensus 238 ~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~ 291 (638)
.|+++++... .+|..+..+++|++|++++|.+.+......+..+++|+.|+++
T Consensus 274 ~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 274 RLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp EEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred ccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 6666554322 3444455555555555555554322221123444455555444
No 50
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=4.9e-28 Score=243.65 Aligned_cols=249 Identities=20% Similarity=0.194 Sum_probs=195.3
Q ss_pred CCCC----CCCCCCcCccceEEC---------CCCCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccc
Q 038036 15 PLNW----SFSTDCCFWEGIKCD---------SKARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSF 81 (638)
Q Consensus 15 ~~~w----~~~~~~~~w~g~~c~---------~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 81 (638)
..+| ....++|.|.|+.|. ...+|++|+++++.++ .+|+.++++++|++|+|++|.++ .+|. .|
T Consensus 47 ~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~-~~ 123 (328)
T 4fcg_A 47 HSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPD-TM 123 (328)
T ss_dssp HHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCS-CG
T ss_pred hhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhH-HH
Confidence 4568 457889999999984 3579999999999997 68888999999999999999998 7775 46
Q ss_pred cccceecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccc-----cCCCCCCCcCEEEccCCcCCccCCc
Q 038036 82 SFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTS-----WNNKSLSSLKILDFSYNDFSGQLPP 156 (638)
Q Consensus 82 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~-----~~~~~l~~L~~L~ls~n~i~~~~~~ 156 (638)
..+++|++|+|++|.++ .+|.. +..+++|++|++++|.+.+.+|..+. ..+..+++|++|++++|.++ .+|.
T Consensus 124 ~~l~~L~~L~Ls~n~l~-~lp~~-l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~ 200 (328)
T 4fcg_A 124 QQFAGLETLTLARNPLR-ALPAS-IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPA 200 (328)
T ss_dssp GGGTTCSEEEEESCCCC-CCCGG-GGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCG
T ss_pred hccCCCCEEECCCCccc-cCcHH-HhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchH
Confidence 78899999999999998 67765 45689999999999888877776432 11224777888888888777 6777
Q ss_pred cCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCC
Q 038036 157 GLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNL 236 (638)
Q Consensus 157 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 236 (638)
.+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|
T Consensus 201 ~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L 279 (328)
T 4fcg_A 201 SIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQL 279 (328)
T ss_dssp GGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTC
T ss_pred hhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCC
Confidence 7777788888888888777 456667777788888888777777777777777778888887777777777777777777
Q ss_pred CEEEccCCCCCCCcchhhcCCCCCcEEEccCccc
Q 038036 237 KSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNF 270 (638)
Q Consensus 237 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l 270 (638)
++|++++|.+.+.+|..+.++++|+.+++..+.+
T Consensus 280 ~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 280 EKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp CEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred CEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 7777777777777777777777777777776544
No 51
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=5.3e-30 Score=281.13 Aligned_cols=408 Identities=17% Similarity=0.125 Sum_probs=295.7
Q ss_pred CCCeEEEECCCCCce---eeccccC------------cCCCCCCEEECCCCCCCCCCccccccccce-ecEEEcCCcc-c
Q 038036 35 KARVTHLWLPYRGLS---GSIYPFI------------GNLTHLCHLNLSHNHLSGPLAINSFSFVIH-LETLDLSYNS-F 97 (638)
Q Consensus 35 ~~~v~~L~l~~~~~~---~~~~~~l------------~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~-L~~L~Ls~n~-i 97 (638)
.+++++|+++++... +.+|..+ ..+++|++|+|++|.+++.........++. |++|+|++|. +
T Consensus 72 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~ 151 (592)
T 3ogk_B 72 FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGF 151 (592)
T ss_dssp CTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEE
T ss_pred CCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCc
Confidence 457999999875321 2222222 278999999999998875433322222445 9999999987 4
Q ss_pred cccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCC----ccCCccCCCCCCCcEEEccccc
Q 038036 98 SGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFS----GQLPPGLGNCSKLQTFRAGFNY 173 (638)
Q Consensus 98 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~----~~~~~~l~~l~~L~~L~l~~n~ 173 (638)
+......+...+++|++|+|++|.+++.....+......+++|++|++++|.++ ..++..+.++++|++|++++|.
T Consensus 152 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 231 (592)
T 3ogk_B 152 TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE 231 (592)
T ss_dssp EHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB
T ss_pred CHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc
Confidence 433344556679999999999998876533322222236899999999999987 2344455689999999999999
Q ss_pred ccccCCccccCCCCCCEEEccCCCCc---cccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCc
Q 038036 174 LSGSIPDDISAATSLQEISLPGNQLS---GAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFL 250 (638)
Q Consensus 174 ~~~~~~~~~~~l~~L~~L~L~~n~i~---~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~ 250 (638)
+.+ ++..+..+++|++|+++..... ...+..+..+++|+.|+++++... .+|..+..+++|++|++++|.+++..
T Consensus 232 ~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~ 309 (592)
T 3ogk_B 232 ILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETED 309 (592)
T ss_dssp GGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHH
T ss_pred HHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHH
Confidence 884 7788899999999999864322 233456778899999999886433 45667788899999999999976443
Q ss_pred c-hhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCC-----------Cccccc-ccccCcCCCCCCEEEcCCC
Q 038036 251 P-QSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGN-----------NNFTGS-FPLTLTSCKVLTAIRLSRN 317 (638)
Q Consensus 251 ~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~-----------n~i~~~-~~~~l~~~~~L~~L~L~~n 317 (638)
. ..+..+++|+.|+++ +.+.+.........+++|++|++++ +.+++. ++.....+++|++|+++.+
T Consensus 310 ~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 388 (592)
T 3ogk_B 310 HCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVS 388 (592)
T ss_dssp HHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEES
T ss_pred HHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecC
Confidence 3 346889999999999 4444332233446789999999993 566543 2233456899999999999
Q ss_pred cccccCchhhhc-CCCCCEEEcc----CCcCCCCcc---ccccccCCCCCcEEEcCCCc--ccccCCcchhhhccccCCC
Q 038036 318 KIVGQISPEILA-LESLSYLSIT----NNNFSNITG---AIRILMGCKNLRMLLLCKKF--FHEAIPDENQRAISSYAFQ 387 (638)
Q Consensus 318 ~i~~~~~~~l~~-l~~L~~L~L~----~n~l~~~~~---~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~~~~~~ 387 (638)
.+++..+..+.. +++|+.|+++ .+.++..+. ....+.++++|+.|+++.|. +.+....... ..++
T Consensus 389 ~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~-----~~~~ 463 (592)
T 3ogk_B 389 DITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG-----QYSP 463 (592)
T ss_dssp CCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHH-----HSCT
T ss_pred CccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHH-----HhCc
Confidence 998777777765 8999999996 556665421 22335679999999997643 3322211111 2478
Q ss_pred CccEEEeeCCcccc-cchHHhhcCCCCCEEecCCCccccC-cCccccCCCCCCEEEccCCcCccc
Q 038036 388 NLLVLGIGDCEIKG-QIPTWLARLKKLQVLDLGSNQITGS-IPGWLGNMPNLFYIDLSYNSISGE 450 (638)
Q Consensus 388 ~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~i~~~ 450 (638)
+|++|++++|.+++ .++..+..+++|++|++++|.+++. ++..+..+++|++|++++|+++..
T Consensus 464 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 464 NVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp TCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred cceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 99999999999886 3566678899999999999998754 344556789999999999998754
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=2.4e-27 Score=242.07 Aligned_cols=287 Identities=20% Similarity=0.222 Sum_probs=169.3
Q ss_pred CCCCCCCCcCccceEECCCCCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCcc
Q 038036 17 NWSFSTDCCFWEGIKCDSKARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNS 96 (638)
Q Consensus 17 ~w~~~~~~~~w~g~~c~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~ 96 (638)
.|......|.|.++ |+ ++++.++ .+|..+. ++|++|++++|.++ .++...|..+++|++|++++|.
T Consensus 22 ~~~~~~~~C~~~~~-c~---------~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~ 87 (353)
T 2z80_A 22 SSNQASLSCDRNGI-CK---------GSSGSLN-SIPSGLT--EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNG 87 (353)
T ss_dssp -----CCEECTTSE-EE---------CCSTTCS-SCCTTCC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSC
T ss_pred CCCccCCCCCCCeE-ee---------CCCCCcc-ccccccc--ccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCc
Confidence 45555667888876 53 3444443 3444333 36666666666665 4555556666666666666666
Q ss_pred ccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCC-ccCCCCCCCcEEEcccc-cc
Q 038036 97 FSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLP-PGLGNCSKLQTFRAGFN-YL 174 (638)
Q Consensus 97 i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~-~~l~~l~~L~~L~l~~n-~~ 174 (638)
+++..+ ..+..+++|++|++++|++++..+..+. .+++|++|++++|.++...+ ..+..+++|++|++++| .+
T Consensus 88 l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~ 162 (353)
T 2z80_A 88 INTIEE-DSFSSLGSLEHLDLSYNYLSNLSSSWFK----PLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTF 162 (353)
T ss_dssp CCEECT-TTTTTCTTCCEEECCSSCCSSCCHHHHT----TCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSC
T ss_pred cCccCH-hhcCCCCCCCEEECCCCcCCcCCHhHhC----CCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccc
Confidence 663322 2344566666666666666643333222 56666666666666663222 35666666777776666 34
Q ss_pred cccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhh
Q 038036 175 SGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSL 254 (638)
Q Consensus 175 ~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l 254 (638)
....+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.......+..+++|++|++++|.+++..+..+
T Consensus 163 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 242 (353)
T 2z80_A 163 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSEL 242 (353)
T ss_dssp CEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC--
T ss_pred cccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccc
Confidence 44445556666667777777776666666666666777777777766654322233346667777777776665433322
Q ss_pred ---cCCCCCcEEEccCccccc----ccCcccccCCCCccEEecCCCccccccccc-CcCCCCCCEEEcCCCcccccCc
Q 038036 255 ---MNCTNLITLNLRINNFRG----DLSAYNFSTLHNLHTIDLGNNNFTGSFPLT-LTSCKVLTAIRLSRNKIVGQIS 324 (638)
Q Consensus 255 ---~~l~~L~~L~L~~n~l~~----~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~-l~~~~~L~~L~L~~n~i~~~~~ 324 (638)
.....++.++++++.+.+ .++ ..+..+++|+.|++++|+++ .+|.. +..+++|++|++++|.+.+..+
T Consensus 243 ~~~~~~~~l~~l~L~~~~l~~~~l~~l~-~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 243 STGETNSLIKKFTFRNVKITDESLFQVM-KLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp ----CCCCCCEEEEESCBCCHHHHHHHH-HHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccccccchhhccccccccccCcchhhhH-HHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 234566777777766653 122 24567778888888888877 44444 4777888888888887775543
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=9.4e-27 Score=237.61 Aligned_cols=283 Identities=18% Similarity=0.195 Sum_probs=195.0
Q ss_pred CCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEE
Q 038036 137 LSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLD 216 (638)
Q Consensus 137 l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ 216 (638)
|+.....+.+++.++ .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++|+
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 444455666666666 4454443 3677777777777654444667777777777777777766666677777777777
Q ss_pred eecCcCcccCCcccCCCCCCCEEEccCCCCCCCcc-hhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCcc
Q 038036 217 LQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLP-QSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNF 295 (638)
Q Consensus 217 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i 295 (638)
+++|.+++..+..+..+++|++|++++|.++...+ ..+.++++|+.|++++|...+.++...+..+++|+.|++++|.+
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence 77777765544446777777777777777774333 35677777777777777432345445677777888888888887
Q ss_pred cccccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCCcCCCCcccc-ccccCCCCCcEEEcCCCcccccCC
Q 038036 296 TGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAI-RILMGCKNLRMLLLCKKFFHEAIP 374 (638)
Q Consensus 296 ~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~ 374 (638)
++..+..+..+++|++|++++|.+.......+..+++|+.|++++|.++.++... ...
T Consensus 187 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~--------------------- 245 (353)
T 2z80_A 187 QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTG--------------------- 245 (353)
T ss_dssp CEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC--------------------------
T ss_pred CccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccc---------------------
Confidence 7777777778888888888888876443344456788888888888777543210 000
Q ss_pred cchhhhccccCCCCccEEEeeCCcccc----cchHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccc
Q 038036 375 DENQRAISSYAFQNLLVLGIGDCEIKG----QIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGE 450 (638)
Q Consensus 375 ~~~~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~ 450 (638)
.....++.++++++.+.+ .+|..+..+++|++|++++|+++...+..+..+++|++|++++|++.+.
T Consensus 246 ---------~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 246 ---------ETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp ----------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ---------cccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 123456677777776664 3678899999999999999999954444568999999999999999865
Q ss_pred cc
Q 038036 451 FP 452 (638)
Q Consensus 451 ~~ 452 (638)
.|
T Consensus 317 ~~ 318 (353)
T 2z80_A 317 CP 318 (353)
T ss_dssp HH
T ss_pred CC
Confidence 44
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=3.5e-27 Score=235.82 Aligned_cols=280 Identities=19% Similarity=0.240 Sum_probs=220.8
Q ss_pred cCccceEECCCCCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCcccccc--cc
Q 038036 25 CFWEGIKCDSKARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQ--FL 102 (638)
Q Consensus 25 ~~w~g~~c~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~--~~ 102 (638)
|.|.++.|. +++++ .+|..+. ++|++|++++|.++ .++...|..+++|++|+|++|.++.. .+
T Consensus 7 C~~~~l~c~-----------~~~l~-~ip~~~~--~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 71 (306)
T 2z66_A 7 CSGTEIRCN-----------SKGLT-SVPTGIP--SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCS 71 (306)
T ss_dssp EETTEEECC-----------SSCCS-SCCSCCC--TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEE
T ss_pred eCCCEEEcC-----------CCCcc-cCCCCCC--CCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcc
Confidence 677777774 33333 3454333 68999999999998 78888888999999999999998733 24
Q ss_pred HHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCC-ccCCCCCCCcEEEcccccccccCCcc
Q 038036 103 SSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLP-PGLGNCSKLQTFRAGFNYLSGSIPDD 181 (638)
Q Consensus 103 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~ 181 (638)
..+. .+++|++|++++|.+...... +. .+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..
T Consensus 72 ~~~~-~~~~L~~L~Ls~n~i~~l~~~-~~----~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 145 (306)
T 2z66_A 72 QSDF-GTTSLKYLDLSFNGVITMSSN-FL----GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 145 (306)
T ss_dssp HHHH-SCSCCCEEECCSCSEEEEEEE-EE----TCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTT
T ss_pred cccc-cccccCEEECCCCccccChhh-cC----CCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhh
Confidence 4444 589999999999988753322 22 78999999999999985544 57889999999999999999888888
Q ss_pred ccCCCCCCEEEccCCCCcc-ccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCC
Q 038036 182 ISAATSLQEISLPGNQLSG-AISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNL 260 (638)
Q Consensus 182 ~~~l~~L~~L~L~~n~i~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L 260 (638)
+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|
T Consensus 146 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 225 (306)
T 2z66_A 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 225 (306)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTC
T ss_pred cccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccC
Confidence 9999999999999999886 578889999999999999999998888889999999999999999997777788999999
Q ss_pred cEEEccCcccccccCcccccCC-CCccEEecCCCcccccc-----cccCcCCCCCCEEEcCCCcccccCchhhhc
Q 038036 261 ITLNLRINNFRGDLSAYNFSTL-HNLHTIDLGNNNFTGSF-----PLTLTSCKVLTAIRLSRNKIVGQISPEILA 329 (638)
Q Consensus 261 ~~L~L~~n~l~~~~~~~~~~~~-~~L~~L~l~~n~i~~~~-----~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 329 (638)
+.|++++|.+.+..+ ..+..+ ++|+.|++++|.++... +.++. ..+.+.+..+.+....|..+.+
T Consensus 226 ~~L~L~~N~l~~~~~-~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~---~~~~~~~~~~~~~C~~p~~~~g 296 (306)
T 2z66_A 226 QVLDYSLNHIMTSKK-QELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIK---DQRQLLVEVERMECATPSDKQG 296 (306)
T ss_dssp CEEECTTSCCCBCSS-SSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHH---HTGGGBSCGGGCBEEESGGGTT
T ss_pred CEeECCCCCCcccCH-HHHHhhhccCCEEEccCCCeecccChHHHHHHHH---hhhhhhccccccccCCchhhCC
Confidence 999999999986544 366777 48999999999987532 23333 2334444555565555655543
No 55
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=7.8e-30 Score=279.97 Aligned_cols=458 Identities=13% Similarity=0.075 Sum_probs=227.4
Q ss_pred CcCccceEECCCCCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCc---c-----------ccccccceecE
Q 038036 24 CCFWEGIKCDSKARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLA---I-----------NSFSFVIHLET 89 (638)
Q Consensus 24 ~~~w~g~~c~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~---~-----------~~~~~~~~L~~ 89 (638)
|+.|.++.. ...+.+++..+... .....+..+++|++|+++++.....+. . ..+..+++|++
T Consensus 34 ck~W~~~~~---~~~~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~ 109 (594)
T 2p1m_B 34 CKSWYEIER---WCRRKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEE 109 (594)
T ss_dssp CHHHHHHHH---HHCCEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCE
T ss_pred HHHHHHhhh---hhceEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCe
Confidence 446887722 23345566554322 122345678899999999875321111 0 11234566888
Q ss_pred EEcCCccccccccHHHHhcCCCCcEEEcccC-cCccc-CCCccccCCCCCCCcCEEEccCCcCCccCCc----cCCCCCC
Q 038036 90 LDLSYNSFSGQFLSSFFQLAENLITLNVSHN-MFSGS-IPSFTSWNNKSLSSLKILDFSYNDFSGQLPP----GLGNCSK 163 (638)
Q Consensus 90 L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~-~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~----~l~~l~~ 163 (638)
|+|++|.+++..+..+...+++|++|++++| .++.. ++.+.. .+++|++|++++|.+++..+. ....+++
T Consensus 110 L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~----~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~ 185 (594)
T 2p1m_B 110 IRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAA----TCRNLKELDLRESDVDDVSGHWLSHFPDTYTS 185 (594)
T ss_dssp EEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHH----HCTTCCEEECTTCEEECCCGGGGGGSCTTCCC
T ss_pred EEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHH----hCCCCCEEeCcCCccCCcchHHHHHHhhcCCc
Confidence 8888887776666666556778888888777 33321 122222 467777777777776543222 2235566
Q ss_pred CcEEEccccc--ccc-cCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEE
Q 038036 164 LQTFRAGFNY--LSG-SIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQ 240 (638)
Q Consensus 164 L~~L~l~~n~--~~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 240 (638)
|++|+++++. +.. .++..+..+++|++|++++|.....++..+..+++|++|++..+...
T Consensus 186 L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~----------------- 248 (594)
T 2p1m_B 186 LVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAE----------------- 248 (594)
T ss_dssp CCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCC-----------------
T ss_pred CcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCc-----------------
Confidence 7777776664 111 11111233566666666666222224444555566666654433210
Q ss_pred ccCCCCCCCcchhhcCCCCCcEE-EccCcccccccCcccccCCCCccEEecCCCcccccc-cccCcCCCCCCEEEcCCCc
Q 038036 241 LHTNSLSGFLPQSLMNCTNLITL-NLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSF-PLTLTSCKVLTAIRLSRNK 318 (638)
Q Consensus 241 L~~n~i~~~~~~~l~~l~~L~~L-~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~-~~~l~~~~~L~~L~L~~n~ 318 (638)
+..+.+. .++..+.++++|+.| .+...... .++ ..+..+++|+.|++++|.+++.. ...+..+++|++|++++|
T Consensus 249 ~~~~~~~-~l~~~l~~~~~L~~Ls~~~~~~~~-~l~-~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~- 324 (594)
T 2p1m_B 249 VRPDVYS-GLSVALSGCKELRCLSGFWDAVPA-YLP-AVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY- 324 (594)
T ss_dssp CCHHHHH-HHHHHHHTCTTCCEEECCBTCCGG-GGG-GGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-
T ss_pred cchhhHH-HHHHHHhcCCCcccccCCcccchh-hHH-HHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-
Confidence 0111111 122344555555555 22221111 111 12224556666666666544322 222345666677766666
Q ss_pred cccc-CchhhhcCCCCCEEEccCC---------cCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCC
Q 038036 319 IVGQ-ISPEILALESLSYLSITNN---------NFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQN 388 (638)
Q Consensus 319 i~~~-~~~~l~~l~~L~~L~L~~n---------~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 388 (638)
+.+. ++.....+++|+.|++.++ .++.. ....... .+++
T Consensus 325 ~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~-~l~~l~~------------------------------~~~~ 373 (594)
T 2p1m_B 325 IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQ-GLVSVSM------------------------------GCPK 373 (594)
T ss_dssp GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHH-HHHHHHH------------------------------HCTT
T ss_pred cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHH-HHHHHHH------------------------------hchh
Confidence 3322 1222234666777766432 11100 0000011 2345
Q ss_pred ccEEEeeCCcccccchHHhh-cCCCCCEEecC--C----CccccC-----cCccccCCCCCCEEEccCCcCccccchhhh
Q 038036 389 LLVLGIGDCEIKGQIPTWLA-RLKKLQVLDLG--S----NQITGS-----IPGWLGNMPNLFYIDLSYNSISGEFPKEFC 456 (638)
Q Consensus 389 L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~L~--~----n~l~~~-----~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~ 456 (638)
|+.|.+..+.+++.....+. .+++|+.|+++ + +.+++. ++..+..+++|++|++++ .++...+..+.
T Consensus 374 L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~ 452 (594)
T 2p1m_B 374 LESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIG 452 (594)
T ss_dssp CCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHH
T ss_pred HHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHH
Confidence 55555544444443333333 35666666665 2 233311 111244556666666655 44433333333
Q ss_pred h-hccchhhhccccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCchhh-hcCcCCCeeeCCCCee
Q 038036 457 G-LRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEI-GNLKFLHVLDLSLNNF 534 (638)
Q Consensus 457 ~-l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l 534 (638)
. +++|+ .|++++|.+++..+..+ ..+++|++|+|++|.+
T Consensus 453 ~~~~~L~---------------------------------------~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 453 TYAKKME---------------------------------------MLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp HHCTTCC---------------------------------------EEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred Hhchhcc---------------------------------------EeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 2 33333 46666666654444444 5577777777777777
Q ss_pred eecCCh-hhhCCCCCCeeeCCCCcceecCCccc-cccCCCCeEecccCc
Q 038036 535 SGEIPD-QISQLTNLEGLDLSENNLHGEIPLSI-IDLHFLSSFSVANND 581 (638)
Q Consensus 535 ~~~~p~-~~~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~l~~n~ 581 (638)
++..+. .+..+++|+.|++++|+++......+ ..++.|+...+..+.
T Consensus 494 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 494 GDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp CHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred cHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence 543332 34456777778887777754333333 345566554454443
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=1.4e-26 Score=231.44 Aligned_cols=248 Identities=21% Similarity=0.271 Sum_probs=165.0
Q ss_pred CEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccC--CCccccCCCCCCCc
Q 038036 63 CHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSI--PSFTSWNNKSLSSL 140 (638)
Q Consensus 63 ~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~--~~~~~~~~~~l~~L 140 (638)
+.++.+++.++ .+|... .++|++|++++|.++ .++..++..+++|++|++++|.+.... +.... .+++|
T Consensus 10 ~~l~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~----~~~~L 80 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDF----GTTSL 80 (306)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHH----SCSCC
T ss_pred CEEEcCCCCcc-cCCCCC---CCCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccc----ccccc
Confidence 46788888777 677643 256888888888887 566666667788888888888776331 12111 46777
Q ss_pred CEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCC-ccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeec
Q 038036 141 KILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIP-DDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQS 219 (638)
Q Consensus 141 ~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~ 219 (638)
++|++++|.+. .++..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 81 ~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 159 (306)
T 2z66_A 81 KYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 159 (306)
T ss_dssp CEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTT
T ss_pred CEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCC
Confidence 77777777776 455556677777777777777764333 3566777777777777777666666677777777777777
Q ss_pred CcCcc-cCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCccccc
Q 038036 220 NKFSG-LIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGS 298 (638)
Q Consensus 220 n~l~~-~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~ 298 (638)
|.+.+ ..|..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+.+ ++...+..+++|+.|++++|.+++.
T Consensus 160 n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~ 238 (306)
T 2z66_A 160 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-LDTFPYKCLNSLQVLDYSLNHIMTS 238 (306)
T ss_dssp CEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB-CCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred CccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc-cChhhccCcccCCEeECCCCCCccc
Confidence 77665 456666677777777777777765556666667777777777776653 3333456666666666666666665
Q ss_pred ccccCcCCC-CCCEEEcCCCcccc
Q 038036 299 FPLTLTSCK-VLTAIRLSRNKIVG 321 (638)
Q Consensus 299 ~~~~l~~~~-~L~~L~L~~n~i~~ 321 (638)
.+..+..++ +|++|++++|.+.+
T Consensus 239 ~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 239 KKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp SSSSCCCCCTTCCEEECTTCCEEC
T ss_pred CHHHHHhhhccCCEEEccCCCeec
Confidence 565565553 66666666666553
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=6e-25 Score=232.00 Aligned_cols=245 Identities=18% Similarity=0.178 Sum_probs=122.3
Q ss_pred CCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcC
Q 038036 62 LCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLK 141 (638)
Q Consensus 62 L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~ 141 (638)
.+.++.++..++ .+|... ...+++|+|++|+|++..+ ..+..+++|++|+|++|.+.+..+..+. ++++|+
T Consensus 56 ~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~----~l~~L~ 126 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQA-DTFRHLHHLEVLQLGRNSIRQIEVGAFN----GLASLN 126 (452)
T ss_dssp SCEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCEECTTTTT----TCTTCC
T ss_pred CcEEEECCCCcC-ccCCCC---CCCccEEECcCCcCceECH-HHcCCCCCCCEEECCCCccCCcChhhcc----CcccCC
Confidence 456666666665 565432 2456666666666663322 2334456666666666655544443332 455666
Q ss_pred EEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCC-CCccccCccccCCCCCCEEEeecC
Q 038036 142 ILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGN-QLSGAISDGVGNLTSLSMLDLQSN 220 (638)
Q Consensus 142 ~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~l~~l~~L~~L~l~~n 220 (638)
+|++++|.++...+..+..+++|++|++++|.+....+..|..+++|++|++++| .+....+..|..+++|++|++++|
T Consensus 127 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n 206 (452)
T 3zyi_A 127 TLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC 206 (452)
T ss_dssp EEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS
T ss_pred EEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC
Confidence 6666666655444444555555666666555555444444555555555555553 233222234455555555555555
Q ss_pred cCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCccccccc
Q 038036 221 KFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFP 300 (638)
Q Consensus 221 ~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~ 300 (638)
.+++. | .+..+++|++|++++|.+++..|..+.++++|+.|++++|.+.+ +....|..+++|+.|++++|++++..+
T Consensus 207 ~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~ 283 (452)
T 3zyi_A 207 NIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL-IERNAFDGLASLVELNLAHNNLSSLPH 283 (452)
T ss_dssp CCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred ccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCce-ECHHHhcCCCCCCEEECCCCcCCccCh
Confidence 55433 2 34444555555555555554444444445555555555544442 222234444444444444444443333
Q ss_pred ccCcCCCCCCEEEcCCCc
Q 038036 301 LTLTSCKVLTAIRLSRNK 318 (638)
Q Consensus 301 ~~l~~~~~L~~L~L~~n~ 318 (638)
..+..+++|+.|++++|.
T Consensus 284 ~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 284 DLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TSSTTCTTCCEEECCSSC
T ss_pred HHhccccCCCEEEccCCC
Confidence 333444444444444443
No 58
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=3e-25 Score=223.24 Aligned_cols=227 Identities=19% Similarity=0.266 Sum_probs=161.9
Q ss_pred CCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCC
Q 038036 110 ENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQ 189 (638)
Q Consensus 110 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 189 (638)
.++++|++++|.+. .+|..+. ++++|++|++++|.++ .+|..+..+++|++|++++|.+. .+|..+..+++|+
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~----~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~ 153 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAF----RLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLR 153 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGG----GGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCC
T ss_pred cceeEEEccCCCch-hcChhhh----hCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCC
Confidence 45555555555555 2232222 3556666666666665 55556666666666666666665 5566666666666
Q ss_pred EEEccCCCCccccCcccc---------CCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCC
Q 038036 190 EISLPGNQLSGAISDGVG---------NLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNL 260 (638)
Q Consensus 190 ~L~L~~n~i~~~~~~~l~---------~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L 260 (638)
+|++++|.+.+.+|..+. .+++|++|++++|.++ .+|..+..+++|++|++++|.+++ +|..+..+++|
T Consensus 154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L 231 (328)
T 4fcg_A 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKL 231 (328)
T ss_dssp EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTC
T ss_pred EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCC
Confidence 666666655555555443 4788888888888887 567778888888888888888884 55668888888
Q ss_pred cEEEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccC
Q 038036 261 ITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITN 340 (638)
Q Consensus 261 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~ 340 (638)
+.|++++|.+.+.++. .+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++++.+++..
T Consensus 232 ~~L~Ls~n~~~~~~p~-~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 232 EELDLRGCTALRNYPP-IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp CEEECTTCTTCCBCCC-CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred CEEECcCCcchhhhHH-HhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 8888888887766654 677888888888888888888888888888888888888888888888888888888888887
Q ss_pred CcCCCC
Q 038036 341 NNFSNI 346 (638)
Q Consensus 341 n~l~~~ 346 (638)
+.+..+
T Consensus 311 ~~~~~l 316 (328)
T 4fcg_A 311 HLQAQL 316 (328)
T ss_dssp GGSCC-
T ss_pred HHHHHH
Confidence 765543
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=8.3e-26 Score=223.31 Aligned_cols=225 Identities=23% Similarity=0.201 Sum_probs=157.5
Q ss_pred EEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEEcc
Q 038036 39 THLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVS 118 (638)
Q Consensus 39 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls 118 (638)
+.++.++++++. +|..+ .++|++|++++|.++ .++...|..+++|++|++++|.+++..+. .+..+++|++|+++
T Consensus 14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~ 88 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAA-AFTGLALLEQLDLS 88 (285)
T ss_dssp CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECC
T ss_pred eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHh-hcCCccCCCEEeCC
Confidence 567777777653 45433 468888888888887 56666777788888888888888744343 44557778888887
Q ss_pred cCc-CcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCC
Q 038036 119 HNM-FSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQ 197 (638)
Q Consensus 119 ~n~-l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 197 (638)
+|. +....+..+. .+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 89 ~n~~l~~~~~~~~~----~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 164 (285)
T 1ozn_A 89 DNAQLRSVDPATFH----GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR 164 (285)
T ss_dssp SCTTCCCCCTTTTT----TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCccccCHHHhc----CCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc
Confidence 776 5544444433 67777777777777776666677777777777777777775555556777777777777777
Q ss_pred CccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCccccc
Q 038036 198 LSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRG 272 (638)
Q Consensus 198 i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~ 272 (638)
+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus 165 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 165 ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred ccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 775555567777777777777777776666677777777777777777776555567777777777777776654
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=5e-25 Score=231.74 Aligned_cols=246 Identities=25% Similarity=0.269 Sum_probs=145.5
Q ss_pred eEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEEc
Q 038036 38 VTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNV 117 (638)
Q Consensus 38 v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L 117 (638)
...++..+..++ .+|..+. +++++|+|++|.++ .++...|..+++|++|+|++|.++ .++...+..+++|++|+|
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCC-EECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEEC
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCC-eeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEEC
Confidence 345566666654 3555443 57777777777776 455566777777777777777776 333344555677777777
Q ss_pred ccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEccccc-ccccCCccccCCCCCCEEEccCC
Q 038036 118 SHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNY-LSGSIPDDISAATSLQEISLPGN 196 (638)
Q Consensus 118 s~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~L~~n 196 (638)
++|+++...+..+. .+++|++|++++|.++...+..|..+++|++|++++|. +....+..|..+++|++|++++|
T Consensus 120 ~~n~l~~~~~~~~~----~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n 195 (440)
T 3zyj_A 120 FDNRLTTIPNGAFV----YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC 195 (440)
T ss_dssp CSSCCSSCCTTTSC----SCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS
T ss_pred CCCcCCeeCHhHhh----ccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC
Confidence 77776654443333 56677777777777665555566666666666666633 33222334556666666666666
Q ss_pred CCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCc
Q 038036 197 QLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSA 276 (638)
Q Consensus 197 ~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 276 (638)
.++. +| .+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+.++++|+.|++++|.+. .++.
T Consensus 196 ~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~ 272 (440)
T 3zyj_A 196 NLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPH 272 (440)
T ss_dssp CCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC-CCCT
T ss_pred cCcc-cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC-ccCh
Confidence 6652 22 3555556666666666665555555555566666666666555554555555555555555555555 3333
Q ss_pred ccccCCCCccEEecCCCcc
Q 038036 277 YNFSTLHNLHTIDLGNNNF 295 (638)
Q Consensus 277 ~~~~~~~~L~~L~l~~n~i 295 (638)
..+..+++|+.|++++|.+
T Consensus 273 ~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 273 DLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp TTTSSCTTCCEEECCSSCE
T ss_pred hHhccccCCCEEEcCCCCc
Confidence 3444555555555555544
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=2.3e-25 Score=220.13 Aligned_cols=206 Identities=20% Similarity=0.252 Sum_probs=118.2
Q ss_pred CCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCC-CccccCccccCCCCCCEEE
Q 038036 138 SSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQ-LSGAISDGVGNLTSLSMLD 216 (638)
Q Consensus 138 ~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~l~~l~~L~~L~ 216 (638)
++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|. +....+..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 345555555555554444445555555555555555554444555555555555555554 4444445555555555555
Q ss_pred eecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCccc
Q 038036 217 LQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFT 296 (638)
Q Consensus 217 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~ 296 (638)
+++|.+++..+..+..+++|++|++++|.++...+..+..+++|+.|++++|.+. .++...+..+++|+.|++++|.++
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc-ccCHHHhcCccccCEEECCCCccc
Confidence 5555555554555555566666666666665444444556666666666666655 333334556666666666666666
Q ss_pred ccccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCCcCC
Q 038036 297 GSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFS 344 (638)
Q Consensus 297 ~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~ 344 (638)
+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 191 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 555666666666666666666666555555666666666666666654
No 62
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=6.1e-25 Score=215.02 Aligned_cols=216 Identities=25% Similarity=0.295 Sum_probs=142.2
Q ss_pred CCCcCccceEECCCCCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccc
Q 038036 22 TDCCFWEGIKCDSKARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQF 101 (638)
Q Consensus 22 ~~~~~w~g~~c~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~ 101 (638)
.++|.|.|+.|...++++.++++++.++. +|..+. +++++|++++|.++ .++...|..+++|++|++++|.++ .+
T Consensus 2 ~~~C~~~~~~C~c~~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~-~i 76 (270)
T 2o6q_A 2 EALCKKDGGVCSCNNNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TL 76 (270)
T ss_dssp CCCBGGGTCSBEEETTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCS-CC
T ss_pred CccCCCCCCCCEeCCCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccC-ee
Confidence 57999999998766778899999999874 665554 68999999999998 577777888888888888888887 55
Q ss_pred cHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCcc
Q 038036 102 LSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDD 181 (638)
Q Consensus 102 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 181 (638)
+...+..+++|++|++++|++.+..+..+. .+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..
T Consensus 77 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 152 (270)
T 2o6q_A 77 PAGIFKELKNLETLWVTDNKLQALPIGVFD----QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGV 152 (270)
T ss_dssp CTTTTSSCTTCCEEECCSSCCCCCCTTTTT----TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred ChhhhcCCCCCCEEECCCCcCCcCCHhHcc----cccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhH
Confidence 555556677777777777776654443333 5666666666666666555555566666666666666665433334
Q ss_pred ccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCC
Q 038036 182 ISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSL 246 (638)
Q Consensus 182 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i 246 (638)
+..+++|++|++++|.+....+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+
T Consensus 153 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 153 FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 55555666666665555544444455555555555555555544333444455555555555544
No 63
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=6.1e-28 Score=264.88 Aligned_cols=420 Identities=15% Similarity=0.099 Sum_probs=290.9
Q ss_pred CCCeEEEECCCCCceeec---c------------ccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCc-ccc
Q 038036 35 KARVTHLWLPYRGLSGSI---Y------------PFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYN-SFS 98 (638)
Q Consensus 35 ~~~v~~L~l~~~~~~~~~---~------------~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n-~i~ 98 (638)
.+++++|+++++.....+ | .....+++|++|+|++|.+++.........+++|++|+|++| .++
T Consensus 65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~ 144 (594)
T 2p1m_B 65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS 144 (594)
T ss_dssp CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEE
T ss_pred CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCC
Confidence 367899999887532111 1 113468899999999999875444433336789999999999 676
Q ss_pred ccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCc--CCc-cCCccCCCCCCCcEEEccccccc
Q 038036 99 GQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYND--FSG-QLPPGLGNCSKLQTFRAGFNYLS 175 (638)
Q Consensus 99 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~--i~~-~~~~~l~~l~~L~~L~l~~n~~~ 175 (638)
+.....+...+++|++|++++|.+++..+..+......+++|++|++++|. +.. .+...+..+++|++|++++|...
T Consensus 145 ~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~ 224 (594)
T 2p1m_B 145 TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPL 224 (594)
T ss_dssp HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCH
T ss_pred HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcH
Confidence 555666777899999999999998766555444444578999999999997 321 12222345799999999998433
Q ss_pred ccCCccccCCCCCCEEEccCCC-------CccccCccccCCCCCCEE-EeecCcCcccCCcccCCCCCCCEEEccCCCCC
Q 038036 176 GSIPDDISAATSLQEISLPGNQ-------LSGAISDGVGNLTSLSML-DLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLS 247 (638)
Q Consensus 176 ~~~~~~~~~l~~L~~L~L~~n~-------i~~~~~~~l~~l~~L~~L-~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~ 247 (638)
..++..+..+++|++|++..+. +. .++..+.++++|+.| .+.+... ..++..+..+++|++|++++|.++
T Consensus 225 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~ 302 (594)
T 2p1m_B 225 EKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQ 302 (594)
T ss_dssp HHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCC
T ss_pred HHHHHHHhcCCcceEcccccccCccchhhHH-HHHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCC
Confidence 3477778899999999977654 22 233467889999999 4433322 233444456789999999999976
Q ss_pred CCc-chhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecC---------CCcccccccccC-cCCCCCCEEEcCC
Q 038036 248 GFL-PQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLG---------NNNFTGSFPLTL-TSCKVLTAIRLSR 316 (638)
Q Consensus 248 ~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~---------~n~i~~~~~~~l-~~~~~L~~L~L~~ 316 (638)
+.. ...+..+++|+.|++++| +...........+++|+.|++. .+.+++.....+ ..+++|+.|.+..
T Consensus 303 ~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~ 381 (594)
T 2p1m_B 303 SYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFC 381 (594)
T ss_dssp HHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEE
T ss_pred HHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhc
Confidence 432 233568999999999988 4422222233458999999983 345554333333 3489999999998
Q ss_pred CcccccCchhhh-cCCCCCEEEcc--C----CcCCCCcc---ccccccCCCCCcEEEcCCCcccccCCcchhhhccccCC
Q 038036 317 NKIVGQISPEIL-ALESLSYLSIT--N----NNFSNITG---AIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAF 386 (638)
Q Consensus 317 n~i~~~~~~~l~-~l~~L~~L~L~--~----n~l~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 386 (638)
+.+++.....+. .+++|+.|+++ + +.++..+. ....+..+++|+.|++++ .+.+....... ..+
T Consensus 382 ~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~-----~~~ 455 (594)
T 2p1m_B 382 RQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIG-----TYA 455 (594)
T ss_dssp SCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHH-----HHC
T ss_pred CCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHH-----Hhc
Confidence 988876666665 58999999999 3 44543321 112356789999999976 33332211111 147
Q ss_pred CCccEEEeeCCcccccchHHh-hcCCCCCEEecCCCccccCcCc-cccCCCCCCEEEccCCcCccccchhh-hhhccchh
Q 038036 387 QNLLVLGIGDCEIKGQIPTWL-ARLKKLQVLDLGSNQITGSIPG-WLGNMPNLFYIDLSYNSISGEFPKEF-CGLRALAL 463 (638)
Q Consensus 387 ~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~ 463 (638)
++|+.|++++|.+++.....+ ..+++|++|++++|.+++.... .+..+++|++|++++|+++......+ ..++.+.+
T Consensus 456 ~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i 535 (594)
T 2p1m_B 456 KKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNV 535 (594)
T ss_dssp TTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEE
T ss_pred hhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEE
Confidence 899999999999876655555 7799999999999999654333 44568999999999999854333333 33455543
No 64
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=1.7e-24 Score=228.51 Aligned_cols=246 Identities=19% Similarity=0.182 Sum_probs=127.1
Q ss_pred ecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcE
Q 038036 87 LETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQT 166 (638)
Q Consensus 87 L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~ 166 (638)
...++.++..++ .+|..+ .+++++|+|++|.+.+..+..+. ++++|++|++++|.+++..+..|..+++|++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~----~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 127 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFR----HLHHLEVLQLGRNSIRQIEVGAFNGLASLNT 127 (452)
T ss_dssp SCEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTT----TCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred CcEEEECCCCcC-ccCCCC---CCCccEEECcCCcCceECHHHcC----CCCCCCEEECCCCccCCcChhhccCcccCCE
Confidence 445666666666 455432 34566666666666654444333 5666666666666666555555666666666
Q ss_pred EEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecC-cCcccCCcccCCCCCCCEEEccCCC
Q 038036 167 FRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSN-KFSGLIPQDIGKLTNLKSLQLHTNS 245 (638)
Q Consensus 167 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~L~~n~ 245 (638)
|++++|.++...+..|..+++|++|++++|.+....+..|..+++|++|++++| .+....+..|..+++|++|++++|+
T Consensus 128 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~ 207 (452)
T 3zyi_A 128 LELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN 207 (452)
T ss_dssp EECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC
T ss_pred EECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc
Confidence 666666665444444555666666666666655444445555556666665553 2332323345555555555555555
Q ss_pred CCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCch
Q 038036 246 LSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISP 325 (638)
Q Consensus 246 i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~ 325 (638)
+++. | .+..+++|+.|++++|.+.+ +....|..+++|+.|++++|.+++..+..+..+++|+.|++++|++++..+.
T Consensus 208 l~~~-~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 284 (452)
T 3zyi_A 208 IKDM-P-NLTPLVGLEELEMSGNHFPE-IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHD 284 (452)
T ss_dssp CSSC-C-CCTTCTTCCEEECTTSCCSE-ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cccc-c-cccccccccEEECcCCcCcc-cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChH
Confidence 5522 2 24444555555555555442 2223444444555555555544444444444444444444444444433333
Q ss_pred hhhcCCCCCEEEccCCcC
Q 038036 326 EILALESLSYLSITNNNF 343 (638)
Q Consensus 326 ~l~~l~~L~~L~L~~n~l 343 (638)
.+..+++|+.|++++|++
T Consensus 285 ~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 285 LFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp SSTTCTTCCEEECCSSCE
T ss_pred HhccccCCCEEEccCCCc
Confidence 344444444444444443
No 65
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=1.5e-24 Score=228.11 Aligned_cols=248 Identities=18% Similarity=0.171 Sum_probs=134.7
Q ss_pred CCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCc
Q 038036 61 HLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSL 140 (638)
Q Consensus 61 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L 140 (638)
..+.++.++..++ .+|...+ ..+++|+|++|++++ ++...+..+++|++|+|++|.+.+..+..+. .+++|
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~----~l~~L 114 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQI-IKVNSFKHLRHLEILQLSRNHIRTIEIGAFN----GLANL 114 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCE-ECTTTTSSCSSCCEEECCSSCCCEECGGGGT----TCSSC
T ss_pred CCCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCe-eCHHHhhCCCCCCEEECCCCcCCccChhhcc----CCccC
Confidence 4567777777776 6765432 456777777777763 3333345566666666666666544433332 56666
Q ss_pred CEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCC-CccccCccccCCCCCCEEEeec
Q 038036 141 KILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQ-LSGAISDGVGNLTSLSMLDLQS 219 (638)
Q Consensus 141 ~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~l~~l~~L~~L~l~~ 219 (638)
++|++++|.++...+..|..+++|++|++++|.+....+..|..+++|++|++++|. +....+..|..+++|++|++++
T Consensus 115 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~ 194 (440)
T 3zyj_A 115 NTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM 194 (440)
T ss_dssp CEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTT
T ss_pred CEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCC
Confidence 666666666664444456666666666666666654444455556666666666532 3322233455555555555555
Q ss_pred CcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCcccccc
Q 038036 220 NKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSF 299 (638)
Q Consensus 220 n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~ 299 (638)
|.++.. | .+..+++|++|++++|.+++..+..+.++++|+.|++++| .+++..
T Consensus 195 n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n-------------------------~l~~~~ 247 (440)
T 3zyj_A 195 CNLREI-P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS-------------------------QIQVIE 247 (440)
T ss_dssp SCCSSC-C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-------------------------CCCEEC
T ss_pred CcCccc-c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCC-------------------------ceeEEC
Confidence 555432 2 3444555555555555555444444444555555555554 444444
Q ss_pred cccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCCcCC
Q 038036 300 PLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFS 344 (638)
Q Consensus 300 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~ 344 (638)
+..+..+++|+.|++++|+++...+..+..+++|+.|++++|++.
T Consensus 248 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 248 RNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred hhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 444444555555555555554444444445555555555555544
No 66
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=1.4e-24 Score=234.81 Aligned_cols=279 Identities=22% Similarity=0.260 Sum_probs=211.1
Q ss_pred CCCCCCCCCcCccceEE------C-CCCCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceec
Q 038036 16 LNWSFSTDCCFWEGIKC------D-SKARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLE 88 (638)
Q Consensus 16 ~~w~~~~~~~~w~g~~c------~-~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~ 88 (638)
..|....+||.|.+..+ . ....++.|+++++.++ .+|..+. ++|++|++++|.++ .+|. .+++|+
T Consensus 13 ~~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~ 84 (622)
T 3g06_A 13 SAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELR 84 (622)
T ss_dssp HHHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCC
T ss_pred HHHHhcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCC
Confidence 34766788999966422 1 1346899999999987 6777665 89999999999998 5765 467899
Q ss_pred EEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEE
Q 038036 89 TLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFR 168 (638)
Q Consensus 89 ~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~ 168 (638)
+|+|++|.++ .+|. .+++|++|++++|.+++... .+++|++|++++|.++. +|.. +++|++|+
T Consensus 85 ~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l~~--------~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~ 147 (622)
T 3g06_A 85 TLEVSGNQLT-SLPV----LPPGLLELSIFSNPLTHLPA--------LPSGLCKLWIFGNQLTS-LPVL---PPGLQELS 147 (622)
T ss_dssp EEEECSCCCS-CCCC----CCTTCCEEEECSCCCCCCCC--------CCTTCCEEECCSSCCSC-CCCC---CTTCCEEE
T ss_pred EEEcCCCcCC-cCCC----CCCCCCEEECcCCcCCCCCC--------CCCCcCEEECCCCCCCc-CCCC---CCCCCEEE
Confidence 9999999998 4554 57899999999998875332 36789999999999884 5543 47899999
Q ss_pred cccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCC
Q 038036 169 AGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSG 248 (638)
Q Consensus 169 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~ 248 (638)
+++|.+++ +|. .+++|+.|++++|.++. +| ..+++|++|++++|.++++ |. .+++|+.|++++|.++
T Consensus 148 Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~- 214 (622)
T 3g06_A 148 VSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLT- 214 (622)
T ss_dssp CCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS-
T ss_pred CcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCCC-CC---ccchhhEEECcCCccc-
Confidence 99998873 453 34678899999998884 44 4567888999998888753 32 2468888888888888
Q ss_pred CcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCchhhh
Q 038036 249 FLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEIL 328 (638)
Q Consensus 249 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 328 (638)
.+|. .+++|+.|++++|.+.+ ++ ..+++|+.|++++|.++ .+|. .+++|+.|++++|.++ .+|..+.
T Consensus 215 ~l~~---~~~~L~~L~Ls~N~L~~-lp----~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~ 281 (622)
T 3g06_A 215 SLPA---LPSGLKELIVSGNRLTS-LP----VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLI 281 (622)
T ss_dssp SCCC---CCTTCCEEECCSSCCSC-CC----CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGG
T ss_pred ccCC---CCCCCCEEEccCCccCc-CC----CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHh
Confidence 3443 24778888888888873 44 45578888888888887 4554 5677888888888887 5677788
Q ss_pred cCCCCCEEEccCCcCCC
Q 038036 329 ALESLSYLSITNNNFSN 345 (638)
Q Consensus 329 ~l~~L~~L~L~~n~l~~ 345 (638)
.+++|+.|++++|.++.
T Consensus 282 ~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 282 HLSSETTVNLEGNPLSE 298 (622)
T ss_dssp GSCTTCEEECCSCCCCH
T ss_pred hccccCEEEecCCCCCC
Confidence 88888888888887764
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=1.4e-26 Score=232.40 Aligned_cols=265 Identities=21% Similarity=0.180 Sum_probs=173.3
Q ss_pred EEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCC
Q 038036 238 SLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRN 317 (638)
Q Consensus 238 ~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n 317 (638)
..+++.+.+.......+..+++|+.|++++|.+.+ ++...+..+++|+.|++++|.+++..+ +..+++|++|++++|
T Consensus 14 i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 14 IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN 90 (317)
T ss_dssp EESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCC-CCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS
T ss_pred EeeccccchhhhHHHHhccCCCCCEEECcCCccCc-CCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC
Confidence 33444444443333334445566666666666653 333356666666666666666654333 556666666666666
Q ss_pred cccccCchhhhcCCCCCEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCC
Q 038036 318 KIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDC 397 (638)
Q Consensus 318 ~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 397 (638)
.+++.. ..++|+.|++++|.++.++. ..+++|++|++++|
T Consensus 91 ~l~~l~-----~~~~L~~L~l~~n~l~~~~~-----------------------------------~~~~~L~~L~l~~N 130 (317)
T 3o53_A 91 YVQELL-----VGPSIETLHAANNNISRVSC-----------------------------------SRGQGKKNIYLANN 130 (317)
T ss_dssp EEEEEE-----ECTTCCEEECCSSCCSEEEE-----------------------------------CCCSSCEEEECCSS
T ss_pred cccccc-----CCCCcCEEECCCCccCCcCc-----------------------------------cccCCCCEEECCCC
Confidence 665321 22556666666665553321 13456777777777
Q ss_pred cccccchHHhhcCCCCCEEecCCCccccCcCccc-cCCCCCCEEEccCCcCccccchhhhhhccchhhhccccCCCCCCc
Q 038036 398 EIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWL-GNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQ 476 (638)
Q Consensus 398 ~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~~~~~~~~ 476 (638)
.+.+..+..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++. +. ...+++|+
T Consensus 131 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~-------------- 194 (317)
T 3o53_A 131 KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLK-------------- 194 (317)
T ss_dssp CCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCC--------------
T ss_pred CCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCC--------------
Confidence 7776666666777777777777777776555554 3577788888887777643 11 11133332
Q ss_pred ccccccccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCC
Q 038036 477 LPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSEN 556 (638)
Q Consensus 477 ~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n 556 (638)
.|++++|.+++ +|..+..+++|++|++++|.++ .+|..+..+++|+.|++++|
T Consensus 195 -------------------------~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N 247 (317)
T 3o53_A 195 -------------------------TLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGN 247 (317)
T ss_dssp -------------------------EEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTC
T ss_pred -------------------------EEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCC
Confidence 57777777774 4445888999999999999998 57888899999999999999
Q ss_pred cce-ecCCccccccCCCCeEeccc-CceeecCCC
Q 038036 557 NLH-GEIPLSIIDLHFLSSFSVAN-NDLQGQIPS 588 (638)
Q Consensus 557 ~l~-~~~p~~l~~l~~L~~L~l~~-n~l~~~~p~ 588 (638)
+++ +.+|..+..++.|+.+++++ +.+.|..|.
T Consensus 248 ~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 248 GFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp CCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred CccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 998 77788888999999999984 455655554
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=4.4e-26 Score=228.16 Aligned_cols=203 Identities=20% Similarity=0.233 Sum_probs=130.4
Q ss_pred CCCcCEEEccCCcCCccCCccC--CCCCCCcEEEcccccccccCCccccCC-----CCCCEEEccCCCCccccCccccCC
Q 038036 137 LSSLKILDFSYNDFSGQLPPGL--GNCSKLQTFRAGFNYLSGSIPDDISAA-----TSLQEISLPGNQLSGAISDGVGNL 209 (638)
Q Consensus 137 l~~L~~L~ls~n~i~~~~~~~l--~~l~~L~~L~l~~n~~~~~~~~~~~~l-----~~L~~L~L~~n~i~~~~~~~l~~l 209 (638)
+++|++|++++|.+++..|..+ ..+++|++|++++|.+.+. |..+..+ ++|++|++++|.+.+..+..+..+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 4555566666666555555544 5666666666666666644 5555544 677777777777776666667777
Q ss_pred CCCCEEEeecCcCccc--CCccc--CCCCCCCEEEccCCCCCCC--cc-hhhcCCCCCcEEEccCcccccccCcccccCC
Q 038036 210 TSLSMLDLQSNKFSGL--IPQDI--GKLTNLKSLQLHTNSLSGF--LP-QSLMNCTNLITLNLRINNFRGDLSAYNFSTL 282 (638)
Q Consensus 210 ~~L~~L~l~~n~l~~~--~~~~l--~~l~~L~~L~L~~n~i~~~--~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 282 (638)
++|++|++++|++.+. .+..+ ..+++|++|++++|.+++. .+ ..+.++++|+.|++++|.+.+..+...+..+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 7777777777765543 12223 6677777777777777631 11 2335667777888877777754433455566
Q ss_pred CCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCCcCCC
Q 038036 283 HNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSN 345 (638)
Q Consensus 283 ~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~ 345 (638)
++|+.|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|+.|++++|++++
T Consensus 253 ~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 253 SQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp TTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 77777777777777 5565554 6777777777777654 43 6667777777777777653
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=4.2e-23 Score=223.29 Aligned_cols=271 Identities=20% Similarity=0.264 Sum_probs=168.4
Q ss_pred CCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCC
Q 038036 110 ENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQ 189 (638)
Q Consensus 110 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 189 (638)
.++++|++++|.++ .+|..+ .++|++|++++|.++ .+|. .+++|++|++++|.++ .+|. .+++|+
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l------~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~ 104 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCL------PAHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLL 104 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCC------CTTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCC
T ss_pred CCCcEEEecCCCcC-ccChhh------CCCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCC
Confidence 35777888877776 334322 257777777777776 3444 4567777777777766 3444 556677
Q ss_pred EEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcc
Q 038036 190 EISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINN 269 (638)
Q Consensus 190 ~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~ 269 (638)
+|++++|.+++. |. .+++|++|++++|.++.+ |.. +++|++|++++|.+++ +|. .+++|+.|++++|.
T Consensus 105 ~L~Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~l-p~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~ 172 (622)
T 3g06_A 105 ELSIFSNPLTHL-PA---LPSGLCKLWIFGNQLTSL-PVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQ 172 (622)
T ss_dssp EEEECSCCCCCC-CC---CCTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSC
T ss_pred EEECcCCcCCCC-CC---CCCCcCEEECCCCCCCcC-CCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCC
Confidence 777777766633 32 456666677766666643 322 3566666666666653 222 23456666666665
Q ss_pred cccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCCcCCCCccc
Q 038036 270 FRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGA 349 (638)
Q Consensus 270 l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 349 (638)
+.+ ++ ..+++|+.|++++|.+++ +|.. .++|+.|++++|.++. ++. .+++|+.|++++|.++.++
T Consensus 173 l~~-l~----~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~lp-- 237 (622)
T 3g06_A 173 LTS-LP----MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTSLP-- 237 (622)
T ss_dssp CSC-CC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCCC--
T ss_pred CCC-Cc----ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCcCC--
Confidence 552 32 234555556666555552 2221 2445555555555542 221 1244555555554444332
Q ss_pred cccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCc
Q 038036 350 IRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPG 429 (638)
Q Consensus 350 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 429 (638)
..+++|+.|++++|.+.. +|. .+++|+.|++++|+++ .+|.
T Consensus 238 ----------------------------------~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~ 278 (622)
T 3g06_A 238 ----------------------------------VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPE 278 (622)
T ss_dssp ----------------------------------CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCG
T ss_pred ----------------------------------CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCH
Confidence 134677888888887774 343 5688999999999998 6788
Q ss_pred cccCCCCCCEEEccCCcCccccchhhhhhccc
Q 038036 430 WLGNMPNLFYIDLSYNSISGEFPKEFCGLRAL 461 (638)
Q Consensus 430 ~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 461 (638)
.+..+++|+.|+|++|++.+..|..+..++..
T Consensus 279 ~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~~~ 310 (622)
T 3g06_A 279 SLIHLSSETTVNLEGNPLSERTLQALREITSA 310 (622)
T ss_dssp GGGGSCTTCEEECCSCCCCHHHHHHHHHHHHS
T ss_pred HHhhccccCEEEecCCCCCCcCHHHHHhcccc
Confidence 89999999999999999998888888777644
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=2.5e-26 Score=229.93 Aligned_cols=252 Identities=16% Similarity=0.152 Sum_probs=198.8
Q ss_pred CcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCcccc-ccccHHHH------hcCCCCcEEEcccCcCcccCCC
Q 038036 56 IGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFS-GQFLSSFF------QLAENLITLNVSHNMFSGSIPS 128 (638)
Q Consensus 56 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~-~~~~~~~~------~~~~~L~~L~Ls~n~l~~~~~~ 128 (638)
++..++|++|++++|.+ .+|...+.. |++|+|++|.++ ..++..+. ..+++|++|++++|.+++..|.
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 45567889999999988 566654322 888999999884 34555432 1588999999999999877776
Q ss_pred ccccCCCCCCCcCEEEccCCcCCccCCccCCCC-----CCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccc--
Q 038036 129 FTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNC-----SKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGA-- 201 (638)
Q Consensus 129 ~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l-----~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~-- 201 (638)
.+. +..+++|++|++++|.+++. |..+..+ ++|++|++++|.+.+..+..+..+++|++|++++|.+.+.
T Consensus 114 ~~~--~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 190 (312)
T 1wwl_A 114 PLL--EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG 190 (312)
T ss_dssp CSS--SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH
T ss_pred HHH--HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH
Confidence 431 13789999999999999866 7777666 8999999999999977778899999999999999987654
Q ss_pred cCccc--cCCCCCCEEEeecCcCccc---CCcccCCCCCCCEEEccCCCCCCCcc-hhhcCCCCCcEEEccCcccccccC
Q 038036 202 ISDGV--GNLTSLSMLDLQSNKFSGL---IPQDIGKLTNLKSLQLHTNSLSGFLP-QSLMNCTNLITLNLRINNFRGDLS 275 (638)
Q Consensus 202 ~~~~l--~~l~~L~~L~l~~n~l~~~---~~~~l~~l~~L~~L~L~~n~i~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~ 275 (638)
.+..+ ..+++|++|++++|.+++. ....+..+++|++|++++|.+++..| ..+..+++|+.|++++|.+. .++
T Consensus 191 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip 269 (312)
T 1wwl_A 191 LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVP 269 (312)
T ss_dssp HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCC
T ss_pred HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhh
Confidence 23333 7889999999999998832 22334577899999999999987664 45667899999999999998 666
Q ss_pred cccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccc
Q 038036 276 AYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVG 321 (638)
Q Consensus 276 ~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~ 321 (638)
.. +. ++|+.|++++|++++. |. +..+++|++|++++|.+++
T Consensus 270 ~~-~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 270 KG-LP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SS-CC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred hh-cc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 53 32 8999999999999865 55 8889999999999999874
No 71
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=4.2e-25 Score=221.54 Aligned_cols=238 Identities=22% Similarity=0.238 Sum_probs=158.4
Q ss_pred cCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcE
Q 038036 183 SAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLIT 262 (638)
Q Consensus 183 ~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~ 262 (638)
..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+ +..+++|++|++++|.+++. ...++|+.
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-----~~~~~L~~ 103 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIET 103 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-----EECTTCCE
T ss_pred ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-----cCCCCcCE
Confidence 344455566666555555444555555566666666665554332 55566666666666655522 12366666
Q ss_pred EEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCchhhh-cCCCCCEEEccCC
Q 038036 263 LNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEIL-ALESLSYLSITNN 341 (638)
Q Consensus 263 L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~-~l~~L~~L~L~~n 341 (638)
|++++|.+.+. + ...+++|+.|++++|.+++..+..+..+++|++|++++|.+.+..+..+. .+++|+.|++++|
T Consensus 104 L~l~~n~l~~~-~---~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 179 (317)
T 3o53_A 104 LHAANNNISRV-S---CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (317)
T ss_dssp EECCSSCCSEE-E---ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred EECCCCccCCc-C---ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC
Confidence 66666666532 2 12356677777777777766566666677777777777777765555553 5677777777777
Q ss_pred cCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchHHhhcCCCCCEEecCCC
Q 038036 342 NFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSN 421 (638)
Q Consensus 342 ~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n 421 (638)
.++.++.. ..+++|++|++++|.+.+..+ .+..+++|++|++++|
T Consensus 180 ~l~~~~~~----------------------------------~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N 224 (317)
T 3o53_A 180 FIYDVKGQ----------------------------------VVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNN 224 (317)
T ss_dssp CCCEEECC----------------------------------CCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTS
T ss_pred cCcccccc----------------------------------cccccCCEEECCCCcCCcchh-hhcccCcccEEECcCC
Confidence 76654321 124567777777777765433 4788899999999999
Q ss_pred ccccCcCccccCCCCCCEEEccCCcCc-cccchhhhhhccchhhhcc
Q 038036 422 QITGSIPGWLGNMPNLFYIDLSYNSIS-GEFPKEFCGLRALALQEVK 467 (638)
Q Consensus 422 ~l~~~~~~~l~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~l~~~ 467 (638)
+++ .+|..+..+++|+.|++++|++. +.+|..+..++.|+.+++.
T Consensus 225 ~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 225 KLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp CCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred ccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 998 56777889999999999999998 7788888888888877665
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=1.6e-24 Score=229.99 Aligned_cols=234 Identities=22% Similarity=0.191 Sum_probs=141.6
Q ss_pred CCcEEEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEc
Q 038036 259 NLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSI 338 (638)
Q Consensus 259 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L 338 (638)
+|+.|++++|.+.+ ++...+..+++|+.|++++|.+++..+ +..+++|++|++++|.+++.. ..++|+.|++
T Consensus 35 ~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L 106 (487)
T 3oja_A 35 NVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHA 106 (487)
T ss_dssp GCCEEECCSSCCCC-CCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEEC
T ss_pred CccEEEeeCCcCCC-CCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEEC
Confidence 66777777776663 333456666666777776666664443 566666666666666665322 1255666666
Q ss_pred cCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchHHhhcCCCCCEEec
Q 038036 339 TNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDL 418 (638)
Q Consensus 339 ~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L 418 (638)
++|.+..++. ..+++|+.|++++|.+.+..|..+..+++|+.|++
T Consensus 107 ~~N~l~~~~~-----------------------------------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 151 (487)
T 3oja_A 107 ANNNISRVSC-----------------------------------SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL 151 (487)
T ss_dssp CSSCCCCEEE-----------------------------------CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEEC
T ss_pred cCCcCCCCCc-----------------------------------cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEEC
Confidence 6665554321 13456666666666666666666666777777777
Q ss_pred CCCccccCcCcccc-CCCCCCEEEccCCcCccccchhhhhhccchhhhccccCCCCCCcccccccccchhhhhccccccc
Q 038036 419 GSNQITGSIPGWLG-NMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLF 497 (638)
Q Consensus 419 ~~n~l~~~~~~~l~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~ 497 (638)
++|.+++..|..+. .+++|++|+|++|.+++..+. ..++.|+
T Consensus 152 s~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~--~~l~~L~----------------------------------- 194 (487)
T 3oja_A 152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ--VVFAKLK----------------------------------- 194 (487)
T ss_dssp TTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC--CCCTTCC-----------------------------------
T ss_pred CCCCCCCcChHHHhhhCCcccEEecCCCcccccccc--ccCCCCC-----------------------------------
Confidence 77777766665554 567777777777776643111 1122222
Q ss_pred CCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcce-ecCCccccccCCCCeEe
Q 038036 498 SLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLH-GEIPLSIIDLHFLSSFS 576 (638)
Q Consensus 498 ~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~ 576 (638)
.|++++|.+++..| .+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|.+. +.+|..+..++.|+.++
T Consensus 195 ----~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~ 268 (487)
T 3oja_A 195 ----TLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268 (487)
T ss_dssp ----EEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHH
T ss_pred ----EEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEe
Confidence 46666666664333 36666777777777777763 5666666677777777777766 45555666666666666
Q ss_pred cc
Q 038036 577 VA 578 (638)
Q Consensus 577 l~ 578 (638)
++
T Consensus 269 ~~ 270 (487)
T 3oja_A 269 KQ 270 (487)
T ss_dssp HH
T ss_pred cc
Confidence 54
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=1.4e-23 Score=222.57 Aligned_cols=235 Identities=22% Similarity=0.221 Sum_probs=169.5
Q ss_pred CCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEc
Q 038036 186 TSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNL 265 (638)
Q Consensus 186 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L 265 (638)
++|++|++++|.+.+..|..|..+++|++|++++|.+++..| +..+++|++|++++|.+++. + ..++|+.|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~----~~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-E----ECTTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-C----CCCCcCEEEC
Confidence 367777777777776666667777777777777777765543 66677777777777766632 2 2367777777
Q ss_pred cCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCchhhh-cCCCCCEEEccCCcCC
Q 038036 266 RINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEIL-ALESLSYLSITNNNFS 344 (638)
Q Consensus 266 ~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~-~l~~L~~L~L~~n~l~ 344 (638)
++|.+.+..+ ..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+. .+++|+.|++++|.++
T Consensus 107 ~~N~l~~~~~----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 107 ANNNISRVSC----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CSSCCCCEEE----CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred cCCcCCCCCc----cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 7777763222 2356777888888887776677777778888888888888776666665 6778888888888776
Q ss_pred CCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchHHhhcCCCCCEEecCCCccc
Q 038036 345 NITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQIT 424 (638)
Q Consensus 345 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~ 424 (638)
.++.. ..+++|+.|++++|.+.+..+ .+..+++|+.|++++|.++
T Consensus 183 ~~~~~----------------------------------~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~ 227 (487)
T 3oja_A 183 DVKGQ----------------------------------VVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV 227 (487)
T ss_dssp EEECC----------------------------------CCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC
T ss_pred ccccc----------------------------------ccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCc
Confidence 54321 134667777777777776444 4788899999999999998
Q ss_pred cCcCccccCCCCCCEEEccCCcCc-cccchhhhhhccchhhhcc
Q 038036 425 GSIPGWLGNMPNLFYIDLSYNSIS-GEFPKEFCGLRALALQEVK 467 (638)
Q Consensus 425 ~~~~~~l~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~l~~~ 467 (638)
+ +|..+..+++|+.|++++|++. +.+|..+..++.+..+.+.
T Consensus 228 ~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 228 L-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp E-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred c-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 5 6777889999999999999997 6777888888888776653
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=8.7e-23 Score=200.58 Aligned_cols=211 Identities=24% Similarity=0.244 Sum_probs=130.2
Q ss_pred ccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccc
Q 038036 52 IYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTS 131 (638)
Q Consensus 52 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 131 (638)
+|..+. ++|++|++++|.++ .++...|..+++|++|++++|.++ .++...+..+++|++|++++|.+.+..+..+.
T Consensus 22 ip~~l~--~~l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 97 (276)
T 2z62_A 22 IPDNLP--FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97 (276)
T ss_dssp CCSSSC--TTCCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred cCCCCC--CCccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccChhhhc
Confidence 444443 46788888888776 455556667777777777777776 33333445567777777777776655544333
Q ss_pred cCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEccccccccc-CCccccCCCCCCEEEccCCCCccccCccccCCC
Q 038036 132 WNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGS-IPDDISAATSLQEISLPGNQLSGAISDGVGNLT 210 (638)
Q Consensus 132 ~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~ 210 (638)
.+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. +|..+..+++|++|++++|.+++..+..+..++
T Consensus 98 ----~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 173 (276)
T 2z62_A 98 ----GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173 (276)
T ss_dssp ----TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH
T ss_pred ----CCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhh
Confidence 567777777777777655555666777777777777766642 466666677777777777776655555555555
Q ss_pred CCC----EEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccc
Q 038036 211 SLS----MLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFR 271 (638)
Q Consensus 211 ~L~----~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~ 271 (638)
+|+ +|++++|.+++..+..+. ..+|++|++++|.+++..+..+.++++|+.|++++|.+.
T Consensus 174 ~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 174 QMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp TCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred hccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 554 566666666544333332 235666666666665444444455555555555555554
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=3.5e-22 Score=196.20 Aligned_cols=183 Identities=21% Similarity=0.242 Sum_probs=85.8
Q ss_pred CCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEE
Q 038036 136 SLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSML 215 (638)
Q Consensus 136 ~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L 215 (638)
.+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 50 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 129 (276)
T 2z62_A 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129 (276)
T ss_dssp TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEE
T ss_pred cccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEE
Confidence 34455555555555544444445555555555555555544444445555555555555555544433344555555555
Q ss_pred EeecCcCccc-CCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCc----EEEccCcccccccCcccccCCCCccEEec
Q 038036 216 DLQSNKFSGL-IPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLI----TLNLRINNFRGDLSAYNFSTLHNLHTIDL 290 (638)
Q Consensus 216 ~l~~n~l~~~-~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~----~L~L~~n~l~~~~~~~~~~~~~~L~~L~l 290 (638)
++++|.+++. +|..+..+++|++|++++|++++..+..+..+++|+ .|++++|.+.+ ++...+. ..+|+.|++
T Consensus 130 ~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~-~~~~~~~-~~~L~~L~L 207 (276)
T 2z62_A 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFK-EIRLKELAL 207 (276)
T ss_dssp ECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCE-ECTTSSC-SCCEEEEEC
T ss_pred ECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccc-cCccccC-CCcccEEEC
Confidence 5555555432 244455555555555555555543333443333333 45555555442 2221222 224555555
Q ss_pred CCCcccccccccCcCCCCCCEEEcCCCccc
Q 038036 291 GNNNFTGSFPLTLTSCKVLTAIRLSRNKIV 320 (638)
Q Consensus 291 ~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~ 320 (638)
++|.+++..+..+..+++|+.|++++|.+.
T Consensus 208 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 208 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred CCCceeecCHhHhcccccccEEEccCCccc
Confidence 555544333333344444444444444443
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=4.6e-22 Score=196.15 Aligned_cols=202 Identities=24% Similarity=0.284 Sum_probs=123.8
Q ss_pred hcCCCCCEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchHHh
Q 038036 328 LALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWL 407 (638)
Q Consensus 328 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 407 (638)
..++++++++++++.++.++..+ .+.++.|++++|.+....+... ..+++|++|++++|.+.+..+.
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~-----~~~l~~L~L~~N~l~~~~~~~~------~~l~~L~~L~L~~n~l~~~~~~-- 73 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDL-----PKDTTILHLSENLLYTFSLATL------MPYTRLTQLNLDRAELTKLQVD-- 73 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCC-----CTTCCEEECTTSCCSEEEGGGG------TTCTTCCEEECTTSCCCEEECC--
T ss_pred cccCCccEEECCCCCCCcCCCCC-----CCCCCEEEcCCCcCCccCHHHh------hcCCCCCEEECCCCccCcccCC--
Confidence 34566667777766666655432 1455555555555544322221 2456666666666666543321
Q ss_pred hcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhhccchhhhccccCCCCCCcccccccccchh
Q 038036 408 ARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIA 487 (638)
Q Consensus 408 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~ 487 (638)
..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..|.++++|+
T Consensus 74 ~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~------------------------- 127 (290)
T 1p9a_G 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ------------------------- 127 (290)
T ss_dssp SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCC-------------------------
T ss_pred CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCC-------------------------
Confidence 55666777777777666 4555666667777777777777655555666666555
Q ss_pred hhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCcccc
Q 038036 488 LYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSII 567 (638)
Q Consensus 488 ~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~ 567 (638)
.|++++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|+++ .+|..+.
T Consensus 128 --------------~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~ 192 (290)
T 1p9a_G 128 --------------ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFF 192 (290)
T ss_dssp --------------EEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTT
T ss_pred --------------EEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhc
Confidence 5666666666555555666677777777777766444455566677777777777766 5566666
Q ss_pred ccCCCCeEecccCcee
Q 038036 568 DLHFLSSFSVANNDLQ 583 (638)
Q Consensus 568 ~l~~L~~L~l~~n~l~ 583 (638)
....|+.+++++|++.
T Consensus 193 ~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 193 GSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TTCCCSEEECCSCCBC
T ss_pred ccccCCeEEeCCCCcc
Confidence 6666777777766665
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.88 E-value=2.5e-21 Score=189.29 Aligned_cols=181 Identities=22% Similarity=0.249 Sum_probs=82.6
Q ss_pred CcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEee
Q 038036 139 SLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQ 218 (638)
Q Consensus 139 ~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~ 218 (638)
++++|++++|.+++..+..|..+++|++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|+++
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 117 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence 45555555555543333444555555555555554443222233444445555555444443333344444444444444
Q ss_pred cCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCccccc
Q 038036 219 SNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGS 298 (638)
Q Consensus 219 ~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~ 298 (638)
+|.++...+..|..+++|++|++++|.+++..+. .+..+++|+.|++++|.+++.
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-------------------------~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG-------------------------VFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-------------------------TTTTCTTCCEEECCSSCCSCC
T ss_pred CCccCeeCHHHhCcCcCCCEEECCCCcCCccCHh-------------------------HccCCcccceeEecCCcCcEe
Confidence 4444444333344444444444444444433333 344444444444444444433
Q ss_pred ccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCCcCC
Q 038036 299 FPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFS 344 (638)
Q Consensus 299 ~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~ 344 (638)
.+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 3333444445555555555444333333444455555555555443
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=1.9e-21 Score=191.72 Aligned_cols=203 Identities=23% Similarity=0.219 Sum_probs=151.1
Q ss_pred CcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCC
Q 038036 56 IGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNK 135 (638)
Q Consensus 56 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~ 135 (638)
+++++++++++++++.++ .+|...+ ..+++|+|++|.+++. +...+..+++|++|++++|.+++..+. .
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~------~ 74 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTF-SLATLMPYTRLTQLNLDRAELTKLQVD------G 74 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEE-EGGGGTTCTTCCEEECTTSCCCEEECC------S
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC---CCCCEEEcCCCcCCcc-CHHHhhcCCCCCEEECCCCccCcccCC------C
Confidence 567788888888888887 6776543 5688888888888743 334456688888888888887754332 2
Q ss_pred CCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEE
Q 038036 136 SLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSML 215 (638)
Q Consensus 136 ~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L 215 (638)
.+++|++|++++|.++ .+|..+..+++|++|++++|.+++..+..|..+++|++|++++|.+....+..|..+++|++|
T Consensus 75 ~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 153 (290)
T 1p9a_G 75 TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153 (290)
T ss_dssp CCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEE
Confidence 6788888888888887 667777788888888888888876555677788888888888888876666667777888888
Q ss_pred EeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccc
Q 038036 216 DLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFR 271 (638)
Q Consensus 216 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~ 271 (638)
++++|+++...+..+..+++|++|++++|.++ .+|..+...+.|+.+++++|.+.
T Consensus 154 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp ECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred ECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 88888877665556677778888888888777 55666666677777777777654
No 79
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=3.6e-24 Score=217.11 Aligned_cols=237 Identities=20% Similarity=0.218 Sum_probs=150.9
Q ss_pred CCCcCccceEECCCCCeEEEECCCCCceeeccccCcCC--CCCCEEECCCCCCCCCCccccccccceecEEEcCCccccc
Q 038036 22 TDCCFWEGIKCDSKARVTHLWLPYRGLSGSIYPFIGNL--THLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSG 99 (638)
Q Consensus 22 ~~~~~w~g~~c~~~~~v~~L~l~~~~~~~~~~~~l~~l--~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~ 99 (638)
.-|..|.++.|+ ...++.++++++.+. +..+..+ +++++|++++|.+.+..+. . ..+++|++|++++|.+++
T Consensus 34 ~vc~~W~~~~~~-~~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~-~~~~~L~~L~L~~~~l~~ 107 (336)
T 2ast_B 34 GVCKRWYRLASD-ESLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-H-FSPFRVQHMDLSNSVIEV 107 (336)
T ss_dssp SSCHHHHHHHTC-STTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-C-CCCBCCCEEECTTCEECH
T ss_pred HHHHHHHHHhcC-chhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-h-ccCCCCCEEEccCCCcCH
Confidence 445579998876 456889999998776 4456666 8999999999998854443 3 368889999999999875
Q ss_pred cccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCC-cCCc-cCCccCCCCCCCcEEEcccc-cccc
Q 038036 100 QFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYN-DFSG-QLPPGLGNCSKLQTFRAGFN-YLSG 176 (638)
Q Consensus 100 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n-~i~~-~~~~~l~~l~~L~~L~l~~n-~~~~ 176 (638)
......+..+++|++|++++|.+++..+..+. .+++|++|++++| .+++ .++..+..+++|++|++++| .+++
T Consensus 108 ~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~----~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~ 183 (336)
T 2ast_B 108 STLHGILSQCSKLQNLSLEGLRLSDPIVNTLA----KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE 183 (336)
T ss_dssp HHHHHHHTTBCCCSEEECTTCBCCHHHHHHHT----TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH
T ss_pred HHHHHHHhhCCCCCEEeCcCcccCHHHHHHHh----cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcCh
Confidence 53444566788888888888877655444333 5777777777777 4553 24444566677777777776 6653
Q ss_pred c-CCccccCCC-CCCEEEccCC--CCc-cccCccccCCCCCCEEEeecCc-CcccCCcccCCCCCCCEEEccCCC-CCCC
Q 038036 177 S-IPDDISAAT-SLQEISLPGN--QLS-GAISDGVGNLTSLSMLDLQSNK-FSGLIPQDIGKLTNLKSLQLHTNS-LSGF 249 (638)
Q Consensus 177 ~-~~~~~~~l~-~L~~L~L~~n--~i~-~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~L~~n~-i~~~ 249 (638)
. ++..+..++ +|++|++++| .++ ..++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +...
T Consensus 184 ~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 263 (336)
T 2ast_B 184 KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE 263 (336)
T ss_dssp HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGG
T ss_pred HHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHH
Confidence 2 344556666 6677776666 333 2334444555666666666665 444444455555566666665553 2211
Q ss_pred cchhhcCCCCCcEEEccCc
Q 038036 250 LPQSLMNCTNLITLNLRIN 268 (638)
Q Consensus 250 ~~~~l~~l~~L~~L~L~~n 268 (638)
....+.++++|+.|++++|
T Consensus 264 ~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 264 TLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGGGGCTTCCEEECTTS
T ss_pred HHHHHhcCCCCCEEeccCc
Confidence 1123445555555555555
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=7e-22 Score=193.41 Aligned_cols=161 Identities=23% Similarity=0.184 Sum_probs=77.0
Q ss_pred CCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEE
Q 038036 136 SLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSML 215 (638)
Q Consensus 136 ~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L 215 (638)
.+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 83 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 162 (272)
T 3rfs_A 83 ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL 162 (272)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEE
Confidence 44555555555555544444444555555555555555544333334455555555555555554444444455555555
Q ss_pred EeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCcc
Q 038036 216 DLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNF 295 (638)
Q Consensus 216 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i 295 (638)
++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+ .+++++.++++.|.+
T Consensus 163 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--------~~~~l~~l~~~~n~~ 234 (272)
T 3rfs_A 163 DLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWINKH 234 (272)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC--------CTTTTHHHHHHHHHT
T ss_pred ECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc--------cCcHHHHHHHHHHhC
Confidence 555555554444444445555555555555554444444445555555555544331 233344444444444
Q ss_pred cccccccCc
Q 038036 296 TGSFPLTLT 304 (638)
Q Consensus 296 ~~~~~~~l~ 304 (638)
++.+|.++.
T Consensus 235 ~g~ip~~~~ 243 (272)
T 3rfs_A 235 SGVVRNSAG 243 (272)
T ss_dssp GGGBBCTTS
T ss_pred CCcccCccc
Confidence 444444433
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=5.8e-22 Score=194.00 Aligned_cols=229 Identities=21% Similarity=0.224 Sum_probs=176.6
Q ss_pred cceecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCC
Q 038036 84 VIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSK 163 (638)
Q Consensus 84 ~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~ 163 (638)
+.++..+++..+.+.+.... ..+++|+.|++++|.+.. .+.+ ..+++|++|++++|.+++ + ..+..+++
T Consensus 18 ~~~l~~l~l~~~~~~~~~~~---~~l~~L~~L~l~~~~i~~-~~~l-----~~l~~L~~L~l~~n~l~~-~-~~l~~l~~ 86 (272)
T 3rfs_A 18 FAETIKANLKKKSVTDAVTQ---NELNSIDQIIANNSDIKS-VQGI-----QYLPNVRYLALGGNKLHD-I-SALKELTN 86 (272)
T ss_dssp HHHHHHHHHTCSCTTSEECH---HHHTTCCEEECTTSCCCC-CTTG-----GGCTTCCEEECTTSCCCC-C-GGGTTCTT
T ss_pred HHHHHHHHhcCccccccccc---ccccceeeeeeCCCCccc-cccc-----ccCCCCcEEECCCCCCCC-c-hhhcCCCC
Confidence 33455566666666644332 346788888888887763 2222 268889999999988874 2 47788899
Q ss_pred CcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccC
Q 038036 164 LQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHT 243 (638)
Q Consensus 164 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~ 243 (638)
|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 87 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 166 (272)
T 3rfs_A 87 LTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY 166 (272)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCC
Confidence 99999999998876666678889999999999998877777788889999999999988877776778888999999999
Q ss_pred CCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccC
Q 038036 244 NSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQI 323 (638)
Q Consensus 244 n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~ 323 (638)
|++++..+..+..+++|+.|++++|.+.+ ++...+..+++|+.|++++|.+.+ .++.|+.++++.|.+++.+
T Consensus 167 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~i 238 (272)
T 3rfs_A 167 NQLQSLPEGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVV 238 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGB
T ss_pred CCcCccCHHHhcCCccCCEEECCCCcCCc-cCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcc
Confidence 98887766677888899999999988884 444467888888888888887653 4567888888888888888
Q ss_pred chhhhcCC
Q 038036 324 SPEILALE 331 (638)
Q Consensus 324 ~~~l~~l~ 331 (638)
|.+++.++
T Consensus 239 p~~~~~~~ 246 (272)
T 3rfs_A 239 RNSAGSVA 246 (272)
T ss_dssp BCTTSCBC
T ss_pred cCcccccC
Confidence 87766543
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=1.2e-22 Score=207.71 Aligned_cols=229 Identities=21% Similarity=0.238 Sum_probs=141.4
Q ss_pred EEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCcc----ccccccc-eecEEEcCCccccccccHHHHhc----CC
Q 038036 40 HLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAI----NSFSFVI-HLETLDLSYNSFSGQFLSSFFQL----AE 110 (638)
Q Consensus 40 ~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~----~~~~~~~-~L~~L~Ls~n~i~~~~~~~~~~~----~~ 110 (638)
.+.++.+.+.+.+|..+...++|++|+|++|.++ ..+. ..|..++ +|++|+|++|.+++..+..+... ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLY-SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGG-GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCC-hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 4678888888888877777777999999999887 4444 5566677 78899999988886656544432 37
Q ss_pred CCcEEEcccCcCcccCCCccccCCCCC-CCcCEEEccCCcCCccCCccC----CC-CCCCcEEEcccccccccCC----c
Q 038036 111 NLITLNVSHNMFSGSIPSFTSWNNKSL-SSLKILDFSYNDFSGQLPPGL----GN-CSKLQTFRAGFNYLSGSIP----D 180 (638)
Q Consensus 111 ~L~~L~Ls~n~l~~~~~~~~~~~~~~l-~~L~~L~ls~n~i~~~~~~~l----~~-l~~L~~L~l~~n~~~~~~~----~ 180 (638)
+|++|++++|.+++..+..+...+..+ ++|++|++++|.+++..+..+ .. .++|++|++++|.+.+..+ .
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 888888888888766554333233344 678888888888775444332 23 3577777777777764332 2
Q ss_pred cccCCC-CCCEEEccCCCCccccCcc----ccCC-CCCCEEEeecCcCccc----CCcccCC-CCCCCEEEccCCCCCCC
Q 038036 181 DISAAT-SLQEISLPGNQLSGAISDG----VGNL-TSLSMLDLQSNKFSGL----IPQDIGK-LTNLKSLQLHTNSLSGF 249 (638)
Q Consensus 181 ~~~~l~-~L~~L~L~~n~i~~~~~~~----l~~l-~~L~~L~l~~n~l~~~----~~~~l~~-l~~L~~L~L~~n~i~~~ 249 (638)
.+..++ +|++|++++|.+++..+.. +..+ ++|++|++++|.+... ++..+.. .++|++|++++|.+++.
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 334444 6777777777766444332 2333 3666666666666542 1222332 23566666666665543
Q ss_pred cch----hhcCCCCCcEEEccCcc
Q 038036 250 LPQ----SLMNCTNLITLNLRINN 269 (638)
Q Consensus 250 ~~~----~l~~l~~L~~L~L~~n~ 269 (638)
.+. .+..+++|+.|++++|.
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred HHHHHHHHHhcCCCccEEEeccCC
Confidence 332 22344555555555554
No 83
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=4.3e-21 Score=185.47 Aligned_cols=192 Identities=22% Similarity=0.273 Sum_probs=116.3
Q ss_pred CCCcCccceEECCCCCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccc
Q 038036 22 TDCCFWEGIKCDSKARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQF 101 (638)
Q Consensus 22 ~~~~~w~g~~c~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~ 101 (638)
++|+.|.|..|. ...++++++++.++ .+|..+. +.+++|++++|.+. .++...|..+++|++|+|++|.+++.
T Consensus 2 ~~Cp~~~gC~C~--~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~- 74 (251)
T 3m19_A 2 KTCETVTGCTCN--EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQTL- 74 (251)
T ss_dssp --CHHHHSSEEE--GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCC-
T ss_pred ccCCCCCceEcC--CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcC-ccCHhHhcCcccCCEEECCCCcCCcc-
Confidence 468899999994 34567888888876 4565554 57888888888887 45555566666677777777666632
Q ss_pred cHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCcc
Q 038036 102 LSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDD 181 (638)
Q Consensus 102 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 181 (638)
+...+..+++|++|++++ |.+++..+..+..+++|++|++++|.+++..+..
T Consensus 75 ~~~~~~~l~~L~~L~L~~----------------------------n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 126 (251)
T 3m19_A 75 SAGVFDDLTELGTLGLAN----------------------------NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGV 126 (251)
T ss_dssp CTTTTTTCTTCCEEECTT----------------------------SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CHhHhccCCcCCEEECCC----------------------------CcccccChhHhcccCCCCEEEcCCCcCCCcChhH
Confidence 222333344455555544 4444334444455555555555555555333334
Q ss_pred ccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCC
Q 038036 182 ISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSG 248 (638)
Q Consensus 182 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~ 248 (638)
|..+++|++|++++|.+.+..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+..
T Consensus 127 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 127 FDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred hccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 4555666666666666654444456666666666666666665555556666666666666666654
No 84
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=3.5e-22 Score=204.23 Aligned_cols=256 Identities=17% Similarity=0.216 Sum_probs=136.6
Q ss_pred EEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCc----ccccCCC-CccEEecCCCcccccccccCcCC-----CC
Q 038036 239 LQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSA----YNFSTLH-NLHTIDLGNNNFTGSFPLTLTSC-----KV 308 (638)
Q Consensus 239 L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~----~~~~~~~-~L~~L~l~~n~i~~~~~~~l~~~-----~~ 308 (638)
+.++.|.+++.+|..+...++|++|++++|.+.+ ... ..+..++ +|++|++++|.+++..+..+..+ ++
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYS-ISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGG-SCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCCh-HHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 3455555555444444444445555555555542 222 2344455 55566666555554444333332 56
Q ss_pred CCEEEcCCCcccccCchhhh----cC-CCCCEEEccCCcCCCCcccc--ccccCCCCCcEEEcCCCcccccCCcchhhhc
Q 038036 309 LTAIRLSRNKIVGQISPEIL----AL-ESLSYLSITNNNFSNITGAI--RILMGCKNLRMLLLCKKFFHEAIPDENQRAI 381 (638)
Q Consensus 309 L~~L~L~~n~i~~~~~~~l~----~l-~~L~~L~L~~n~l~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 381 (638)
|++|++++|.+++..+..+. .+ ++|+.|++++|.++..+... ..+..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~-------------------------- 135 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSN-------------------------- 135 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTT--------------------------
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHh--------------------------
Confidence 66666666666554444332 22 55666666666554332110 00111
Q ss_pred cccCCCCccEEEeeCCccccc----chHHhhcCC-CCCEEecCCCccccCcCc----cccCC-CCCCEEEccCCcCcccc
Q 038036 382 SSYAFQNLLVLGIGDCEIKGQ----IPTWLARLK-KLQVLDLGSNQITGSIPG----WLGNM-PNLFYIDLSYNSISGEF 451 (638)
Q Consensus 382 ~~~~~~~L~~L~l~~~~~~~~----~~~~l~~l~-~L~~L~L~~n~l~~~~~~----~l~~l-~~L~~L~L~~n~i~~~~ 451 (638)
..++|++|++++|.+.+. ++..+..++ +|++|++++|++++..+. .+..+ ++|++|+|++|.+....
T Consensus 136 ---~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~ 212 (362)
T 3goz_A 136 ---LPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKS 212 (362)
T ss_dssp ---SCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC
T ss_pred ---CCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhH
Confidence 023555555555555532 344455555 888888888888766553 33445 48888888888887532
Q ss_pred ----chhhhhh-ccchhhhccccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCch----hhhcCc
Q 038036 452 ----PKEFCGL-RALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPI----EIGNLK 522 (638)
Q Consensus 452 ----~~~~~~l-~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~----~l~~l~ 522 (638)
+..+... +.|+ .|++++|.+++..+. .+..++
T Consensus 213 ~~~l~~~l~~~~~~L~---------------------------------------~L~Ls~N~l~~~~~~~l~~~~~~l~ 253 (362)
T 3goz_A 213 YAELAYIFSSIPNHVV---------------------------------------SLNLCLNCLHGPSLENLKLLKDSLK 253 (362)
T ss_dssp HHHHHHHHHHSCTTCC---------------------------------------EEECCSSCCCCCCHHHHHHTTTTTT
T ss_pred HHHHHHHHhcCCCCce---------------------------------------EEECcCCCCCcHHHHHHHHHHhcCC
Confidence 2222221 1332 567777777654442 234556
Q ss_pred CCCeeeCCCCeeeec-------CChhhhCCCCCCeeeCCCCcceecCC
Q 038036 523 FLHVLDLSLNNFSGE-------IPDQISQLTNLEGLDLSENNLHGEIP 563 (638)
Q Consensus 523 ~L~~L~Ls~n~l~~~-------~p~~~~~l~~L~~L~Ls~n~l~~~~p 563 (638)
+|++|+|++|.+.+. ++..+..+++|+.||+++|++....+
T Consensus 254 ~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 254 HLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp TCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred CccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 777777777763322 22345566667777777777665433
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=1.1e-21 Score=198.72 Aligned_cols=251 Identities=16% Similarity=0.201 Sum_probs=139.4
Q ss_pred CCEEEccCCCCCCCcchhhcCC--CCCcEEEccCcccccccCcccccCCCCccEEecCCCccccc-ccccCcCCCCCCEE
Q 038036 236 LKSLQLHTNSLSGFLPQSLMNC--TNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGS-FPLTLTSCKVLTAI 312 (638)
Q Consensus 236 L~~L~L~~n~i~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~-~~~~l~~~~~L~~L 312 (638)
++.++++++.+. +..+..+ +.++.|++++|.+.+..+ .+..+++|++|++++|.+++. ++..+..+++|++|
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~--~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLA--EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCC--SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccch--hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 455666655544 3344444 566666666666554333 233455666666666655543 44455555666666
Q ss_pred EcCCCcccccCchhhhcCCCCCEEEccCC-cCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccE
Q 038036 313 RLSRNKIVGQISPEILALESLSYLSITNN-NFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLV 391 (638)
Q Consensus 313 ~L~~n~i~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 391 (638)
++++|.+++..+..+..+++|++|++++| .++..
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~--------------------------------------------- 158 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF--------------------------------------------- 158 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH---------------------------------------------
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHH---------------------------------------------
Confidence 66666555544555555555555555554 22210
Q ss_pred EEeeCCcccccchHHhhcCCCCCEEecCCC-ccccC-cCccccCCC-CCCEEEccCC--cCc-cccchhhhhhccchhhh
Q 038036 392 LGIGDCEIKGQIPTWLARLKKLQVLDLGSN-QITGS-IPGWLGNMP-NLFYIDLSYN--SIS-GEFPKEFCGLRALALQE 465 (638)
Q Consensus 392 L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n-~l~~~-~~~~l~~l~-~L~~L~L~~n--~i~-~~~~~~~~~l~~L~~l~ 465 (638)
.++..+..+++|++|++++| .+++. ++..+..++ +|++|++++| .++ +.++..+..+++|+
T Consensus 159 ----------~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~--- 225 (336)
T 2ast_B 159 ----------ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV--- 225 (336)
T ss_dssp ----------HHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCS---
T ss_pred ----------HHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCC---
Confidence 12333444455555555555 44432 233344455 5555555555 232 23333444444443
Q ss_pred ccccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCc-ccccCchhhhcCcCCCeeeCCCCe-eeecCChhhh
Q 038036 466 VKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNS-LNGSIPIEIGNLKFLHVLDLSLNN-FSGEIPDQIS 543 (638)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~-l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~ 543 (638)
.|++++|. +++..+..+..+++|++|++++|. +.......+.
T Consensus 226 ------------------------------------~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~ 269 (336)
T 2ast_B 226 ------------------------------------HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG 269 (336)
T ss_dssp ------------------------------------EEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGG
T ss_pred ------------------------------------EEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHh
Confidence 45555555 444555667788889999999885 3322223577
Q ss_pred CCCCCCeeeCCCCcceecCCccccccC-CCCeEecccCceeecCCCC
Q 038036 544 QLTNLEGLDLSENNLHGEIPLSIIDLH-FLSSFSVANNDLQGQIPSG 589 (638)
Q Consensus 544 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~l~~n~l~~~~p~~ 589 (638)
.+++|+.|++++| ++. ..+..+. .++.|++++|++++..|..
T Consensus 270 ~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 270 EIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp GCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred cCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCc
Confidence 8889999999988 432 3344443 4777888999999888753
No 86
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=2.4e-22 Score=207.63 Aligned_cols=245 Identities=18% Similarity=0.188 Sum_probs=134.6
Q ss_pred cccCCCCccEEecCCCccccccc----ccCcCCCCCCEEEcCCCc---ccccCchhh-------hcCCCCCEEEccCCcC
Q 038036 278 NFSTLHNLHTIDLGNNNFTGSFP----LTLTSCKVLTAIRLSRNK---IVGQISPEI-------LALESLSYLSITNNNF 343 (638)
Q Consensus 278 ~~~~~~~L~~L~l~~n~i~~~~~----~~l~~~~~L~~L~L~~n~---i~~~~~~~l-------~~l~~L~~L~L~~n~l 343 (638)
.+..+++|+.|++++|.++...+ ..+..+++|++|++++|. +.+.+|..+ ..+++|+.|++++|.+
T Consensus 27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 106 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106 (386)
T ss_dssp HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence 45556777777777777765432 335567777777777753 333444433 4566677777777666
Q ss_pred CCCcc--ccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchHHhhcC---------CC
Q 038036 344 SNITG--AIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARL---------KK 412 (638)
Q Consensus 344 ~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l---------~~ 412 (638)
..... ....+..+++|+.|++++|.+....+.. ++..+..+ ++
T Consensus 107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~--------------------------l~~~l~~l~~~~~~~~~~~ 160 (386)
T 2ca6_A 107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAK--------------------------IARALQELAVNKKAKNAPP 160 (386)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHH--------------------------HHHHHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHH--------------------------HHHHHHHHhhhhhcccCCC
Confidence 54211 1123344455555555555443221111 11122222 55
Q ss_pred CCEEecCCCccc-cCcC---ccccCCCCCCEEEccCCcCcc-----ccchhhhhhccchhhhccccCCCCCCcccccccc
Q 038036 413 LQVLDLGSNQIT-GSIP---GWLGNMPNLFYIDLSYNSISG-----EFPKEFCGLRALALQEVKNRADGSQLQLPLFVPK 483 (638)
Q Consensus 413 L~~L~L~~n~l~-~~~~---~~l~~l~~L~~L~L~~n~i~~-----~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~ 483 (638)
|++|++++|+++ ...+ ..+..+++|++|++++|.+.. ..+..+..+++|+
T Consensus 161 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~--------------------- 219 (386)
T 2ca6_A 161 LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELK--------------------- 219 (386)
T ss_dssp CCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCC---------------------
T ss_pred CcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCcc---------------------
Confidence 555555555554 2222 234445555555555555541 1111233333332
Q ss_pred cchhhhhcccccccCCCCeEEccCCccc----ccCchhhhcCcCCCeeeCCCCeeeec----CChhhhC--CCCCCeeeC
Q 038036 484 TKIALYNQQYNKLFSLPPAIYLRNNSLN----GSIPIEIGNLKFLHVLDLSLNNFSGE----IPDQISQ--LTNLEGLDL 553 (638)
Q Consensus 484 ~~l~~~~~~~~~l~~~~~~L~ls~n~l~----~~~~~~l~~l~~L~~L~Ls~n~l~~~----~p~~~~~--l~~L~~L~L 553 (638)
.|++++|.++ ..+|..+..+++|++|+|++|.+++. ++..+.. +++|+.|+|
T Consensus 220 ------------------~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L 281 (386)
T 2ca6_A 220 ------------------VLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRL 281 (386)
T ss_dssp ------------------EEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEEC
T ss_pred ------------------EEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEEC
Confidence 4555555553 34556667777777777777777654 4555533 777777777
Q ss_pred CCCccee----cCCccc-cccCCCCeEecccCceeecCC
Q 038036 554 SENNLHG----EIPLSI-IDLHFLSSFSVANNDLQGQIP 587 (638)
Q Consensus 554 s~n~l~~----~~p~~l-~~l~~L~~L~l~~n~l~~~~p 587 (638)
++|.+++ .+|..+ .++++|+.|++++|++++..|
T Consensus 282 ~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 282 QYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp CSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred cCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 7777776 366665 556777777777777775543
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=5.9e-21 Score=184.44 Aligned_cols=162 Identities=22% Similarity=0.208 Sum_probs=135.3
Q ss_pred CCccEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhhccchhhhc
Q 038036 387 QNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEV 466 (638)
Q Consensus 387 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~ 466 (638)
++++.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..|..+++|+
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~---- 110 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLD---- 110 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC----
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCC----
Confidence 4677777777777777777788888888888888888877777788888888888888888877667777777766
Q ss_pred cccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCC
Q 038036 467 KNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLT 546 (638)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 546 (638)
.|++++|.+++..+..+..+++|++|+|++|.+++..+..|..++
T Consensus 111 -----------------------------------~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 155 (251)
T 3m19_A 111 -----------------------------------KLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT 155 (251)
T ss_dssp -----------------------------------EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred -----------------------------------EEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCc
Confidence 688888888866666788899999999999999877777899999
Q ss_pred CCCeeeCCCCcceecCCccccccCCCCeEecccCceeecCC
Q 038036 547 NLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIP 587 (638)
Q Consensus 547 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p 587 (638)
+|+.|+|++|++++..+..+..+++|+.|++++|++.+..+
T Consensus 156 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 196 (251)
T 3m19_A 156 NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRC 196 (251)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTST
T ss_pred CCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCcc
Confidence 99999999999997777789999999999999999986543
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=2.1e-22 Score=208.09 Aligned_cols=186 Identities=22% Similarity=0.316 Sum_probs=81.0
Q ss_pred CCCCCCcEEEcccccccc----cCCccccCCCCCCEEEccCCCCccccCccc----cCC---------CCCCEEEeecCc
Q 038036 159 GNCSKLQTFRAGFNYLSG----SIPDDISAATSLQEISLPGNQLSGAISDGV----GNL---------TSLSMLDLQSNK 221 (638)
Q Consensus 159 ~~l~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l----~~l---------~~L~~L~l~~n~ 221 (638)
..+++|++|++++|.+.. .++..+..+++|++|++++|.+....+..+ ..+ ++|++|++++|+
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 344455555555554443 233344445555555555555432222111 112 445555555544
Q ss_pred Ccc-cCC---cccCCCCCCCEEEccCCCCCC-----CcchhhcCCCCCcEEEccCcccc----cccCcccccCCCCccEE
Q 038036 222 FSG-LIP---QDIGKLTNLKSLQLHTNSLSG-----FLPQSLMNCTNLITLNLRINNFR----GDLSAYNFSTLHNLHTI 288 (638)
Q Consensus 222 l~~-~~~---~~l~~l~~L~~L~L~~n~i~~-----~~~~~l~~l~~L~~L~L~~n~l~----~~~~~~~~~~~~~L~~L 288 (638)
++. .++ ..+..+++|++|++++|.++. ..+..+..+++|+.|++++|.+. ..++. .+..+++|+.|
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~-~l~~~~~L~~L 249 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI-ALKSWPNLREL 249 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH-HGGGCTTCCEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH-HHccCCCcCEE
Confidence 431 111 123344455555555554441 11223444455555555555443 12221 33444455555
Q ss_pred ecCCCccccc----ccccCc--CCCCCCEEEcCCCcccc----cCchhh-hcCCCCCEEEccCCcCCC
Q 038036 289 DLGNNNFTGS----FPLTLT--SCKVLTAIRLSRNKIVG----QISPEI-LALESLSYLSITNNNFSN 345 (638)
Q Consensus 289 ~l~~n~i~~~----~~~~l~--~~~~L~~L~L~~n~i~~----~~~~~l-~~l~~L~~L~L~~n~l~~ 345 (638)
++++|.+++. ++..+. .+++|++|++++|.+++ .++..+ ..+++|+.|++++|.++.
T Consensus 250 ~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred ECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 5555554432 233332 24555555555555544 233333 334555555555555543
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=3.6e-20 Score=177.57 Aligned_cols=195 Identities=16% Similarity=0.216 Sum_probs=104.9
Q ss_pred CcCEEEccCCcCCccCCccCCCCCCCcEEEccccc-ccccCCccccCCCCCCEEEccC-CCCccccCccccCCCCCCEEE
Q 038036 139 SLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNY-LSGSIPDDISAATSLQEISLPG-NQLSGAISDGVGNLTSLSMLD 216 (638)
Q Consensus 139 ~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~l~~l~~L~~L~ 216 (638)
+|++|++++|.+++..+..|..+++|++|++++|. +....+..|..+++|++|++++ |.++...+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45555555555554444455555566666666554 5433334555566666666665 555544445555666666666
Q ss_pred eecCcCcccCCcccCCCCCCC---EEEccCC-CCCCCcchhhcCCCCCc-EEEccCcccccccCcccccCCCCccEEecC
Q 038036 217 LQSNKFSGLIPQDIGKLTNLK---SLQLHTN-SLSGFLPQSLMNCTNLI-TLNLRINNFRGDLSAYNFSTLHNLHTIDLG 291 (638)
Q Consensus 217 l~~n~l~~~~~~~l~~l~~L~---~L~L~~n-~i~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~ 291 (638)
+++|.+++ +|. +..+++|+ +|++++| .++...+..+.++++|+ .|++++|.+. .++...+.. ++|+.|+++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEEEECT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEEEcC
Confidence 66666554 232 55555555 6666666 55544444455566666 6666666555 444434443 556666666
Q ss_pred CCc-ccccccccCcCC-CCCCEEEcCCCcccccCchhhhcCCCCCEEEccC
Q 038036 292 NNN-FTGSFPLTLTSC-KVLTAIRLSRNKIVGQISPEILALESLSYLSITN 340 (638)
Q Consensus 292 ~n~-i~~~~~~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~ 340 (638)
+|+ ++...+..+..+ ++|+.|++++|.++.. |.. .+++|+.|++++
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~ 235 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIARN 235 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEECTT
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCceeeccC
Confidence 663 554444445555 5555555555555432 221 344555555544
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=2e-21 Score=194.20 Aligned_cols=228 Identities=16% Similarity=0.161 Sum_probs=140.4
Q ss_pred eecEEEcCCccccccccHHH--HhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCC----ccCC
Q 038036 86 HLETLDLSYNSFSGQFLSSF--FQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLP----PGLG 159 (638)
Q Consensus 86 ~L~~L~Ls~n~i~~~~~~~~--~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~----~~l~ 159 (638)
.++.+.+.++.+++.....+ ...+++|++|++++|.+.+..+..+.. ..+++|++|++++|.+++..+ ..+.
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~--~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLE--ATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSS--CCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhh--ccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 35566666665543211111 112355777777777776655543300 256777777777777765433 2344
Q ss_pred CCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccc--c--CccccCCCCCCEEEeecCcCcccCC--c-ccCC
Q 038036 160 NCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGA--I--SDGVGNLTSLSMLDLQSNKFSGLIP--Q-DIGK 232 (638)
Q Consensus 160 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~--~--~~~l~~l~~L~~L~l~~n~l~~~~~--~-~l~~ 232 (638)
.+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. . +..+..+++|++|++++|.++...+ . .+..
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 567777777777777666666677777777777777765431 1 2223566777777777777753211 1 2355
Q ss_pred CCCCCEEEccCCCCCCCcchhhcCC---CCCcEEEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCC
Q 038036 233 LTNLKSLQLHTNSLSGFLPQSLMNC---TNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVL 309 (638)
Q Consensus 233 l~~L~~L~L~~n~i~~~~~~~l~~l---~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L 309 (638)
+++|++|++++|.+++..|..+..+ ++|++|++++|.+. .++.. + .++|+.|++++|++++. |. +..+++|
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~-~--~~~L~~L~Ls~N~l~~~-~~-~~~l~~L 296 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKG-L--PAKLRVLDLSSNRLNRA-PQ-PDELPEV 296 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSC-C--CSCCSCEECCSCCCCSC-CC-TTSCCCC
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhh-h--cCCCCEEECCCCcCCCC-ch-hhhCCCc
Confidence 6777777777777776656666555 57777777777776 45542 2 26777888888877743 32 5667778
Q ss_pred CEEEcCCCcccc
Q 038036 310 TAIRLSRNKIVG 321 (638)
Q Consensus 310 ~~L~L~~n~i~~ 321 (638)
+.|++++|.+++
T Consensus 297 ~~L~L~~N~l~~ 308 (310)
T 4glp_A 297 DNLTLDGNPFLV 308 (310)
T ss_dssp SCEECSSTTTSC
T ss_pred cEEECcCCCCCC
Confidence 888888887753
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=2.4e-20 Score=186.29 Aligned_cols=200 Identities=19% Similarity=0.209 Sum_probs=101.0
Q ss_pred CCcCEEEccCCcCCccCCccC--CCCCCCcEEEcccccccccCC----ccccCCCCCCEEEccCCCCccccCccccCCCC
Q 038036 138 SSLKILDFSYNDFSGQLPPGL--GNCSKLQTFRAGFNYLSGSIP----DDISAATSLQEISLPGNQLSGAISDGVGNLTS 211 (638)
Q Consensus 138 ~~L~~L~ls~n~i~~~~~~~l--~~l~~L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~ 211 (638)
++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 345555555555555555554 555555555555555554322 22234555555555555555555555555555
Q ss_pred CCEEEeecCcCccc---C-CcccCCCCCCCEEEccCCCCCCCcch----hhcCCCCCcEEEccCcccccccCcccccCC-
Q 038036 212 LSMLDLQSNKFSGL---I-PQDIGKLTNLKSLQLHTNSLSGFLPQ----SLMNCTNLITLNLRINNFRGDLSAYNFSTL- 282 (638)
Q Consensus 212 L~~L~l~~n~l~~~---~-~~~l~~l~~L~~L~L~~n~i~~~~~~----~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~- 282 (638)
|++|++++|++.+. . +..+..+++|++|++++|+++. .+. .+..+++|++|++++|.+.+..+. .+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~-~~~~~~ 248 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNP-SAPRCM 248 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCS-CCSSCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchh-hHHhcc
Confidence 55555555554321 1 1122445555555555555542 222 134455555555555555533222 22222
Q ss_pred --CCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCCcCC
Q 038036 283 --HNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFS 344 (638)
Q Consensus 283 --~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~ 344 (638)
++|++|++++|+++ .+|..+. ++|++|++++|++++. |. +..+++|+.|++++|+++
T Consensus 249 ~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 249 WSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred CcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 45555555555555 3444432 4555555555555532 11 344555555555555554
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.83 E-value=7.9e-20 Score=175.21 Aligned_cols=205 Identities=20% Similarity=0.246 Sum_probs=166.6
Q ss_pred CCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCC-CccccCccccCCCCCCEEEeec-CcCcccCC
Q 038036 150 FSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQ-LSGAISDGVGNLTSLSMLDLQS-NKFSGLIP 227 (638)
Q Consensus 150 i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~ 227 (638)
++ .+|. +. ++|++|++++|.+++..+..|..+++|++|++++|. ++...+..|..+++|++|++++ |.++...+
T Consensus 23 l~-~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 23 IQ-RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp CS-SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred cc-ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 44 4565 33 489999999999997666688999999999999997 8867667899999999999998 99998877
Q ss_pred cccCCCCCCCEEEccCCCCCCCcchhhcCCCCCc---EEEccCc-ccccccCcccccCCCCcc-EEecCCCccccccccc
Q 038036 228 QDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLI---TLNLRIN-NFRGDLSAYNFSTLHNLH-TIDLGNNNFTGSFPLT 302 (638)
Q Consensus 228 ~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~---~L~L~~n-~l~~~~~~~~~~~~~~L~-~L~l~~n~i~~~~~~~ 302 (638)
..|..+++|++|++++|.+++ +|. +..+++|+ .|++++| .+. .++...|..+++|+ .|++++|+++ .+|..
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~-~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~ 174 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMT-SIPVNAFQGLCNETLTLKLYNNGFT-SVQGY 174 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCC-EECTTTTTTTBSSEEEEECCSCCCC-EECTT
T ss_pred HHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchh-hcCcccccchhcceeEEEcCCCCCc-ccCHh
Confidence 788999999999999999985 565 88888888 9999999 777 56666788899999 9999999998 44444
Q ss_pred CcCCCCCCEEEcCCCc-ccccCchhhhcC-CCCCEEEccCCcCCCCccccccccCCCCCcEEEcCCC
Q 038036 303 LTSCKVLTAIRLSRNK-IVGQISPEILAL-ESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKK 367 (638)
Q Consensus 303 l~~~~~L~~L~L~~n~-i~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~ 367 (638)
....++|++|++++|+ ++...+..+..+ ++|+.|++++|.++.++.. .+++|+.|+++++
T Consensus 175 ~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~-----~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 175 AFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK-----GLEHLKELIARNT 236 (239)
T ss_dssp TTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT-----TCTTCSEEECTTC
T ss_pred hcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh-----HhccCceeeccCc
Confidence 3333889999999995 887667778888 8999999999998877642 4566666666553
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.82 E-value=1.1e-19 Score=181.05 Aligned_cols=191 Identities=24% Similarity=0.368 Sum_probs=100.0
Q ss_pred cceecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCC
Q 038036 84 VIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSK 163 (638)
Q Consensus 84 ~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~ 163 (638)
+.+|++|++++|.++ .++. +..+++|++|++++|.+.+..+ + ..+++|++|++++|.+++ + ..+..+++
T Consensus 40 l~~L~~L~l~~~~i~-~l~~--~~~l~~L~~L~L~~n~i~~~~~--~----~~l~~L~~L~L~~n~l~~-~-~~~~~l~~ 108 (308)
T 1h6u_A 40 LDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKDNQITDLAP--L----KNLTKITELELSGNPLKN-V-SAIAGLQS 108 (308)
T ss_dssp HHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--G----TTCCSCCEEECCSCCCSC-C-GGGTTCTT
T ss_pred cCCcCEEEeeCCCcc-Cchh--hhccCCCCEEEccCCcCCCChh--H----ccCCCCCEEEccCCcCCC-c-hhhcCCCC
Confidence 344444444444444 2221 2334455555555554443222 1 145555555555555542 2 23555555
Q ss_pred CcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccC
Q 038036 164 LQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHT 243 (638)
Q Consensus 164 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~ 243 (638)
|++|++++|.+.+ ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|++++
T Consensus 109 L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~ 182 (308)
T 1h6u_A 109 IKTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADD 182 (308)
T ss_dssp CCEEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred CCEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCC
Confidence 5555555555553 22 25555666666666665553322 5556666666666666654322 55666666666666
Q ss_pred CCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCccc
Q 038036 244 NSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFT 296 (638)
Q Consensus 244 n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~ 296 (638)
|.+++..+ +..+++|+.|++++|.+.+ ++ .+..+++|+.|++++|.++
T Consensus 183 n~l~~~~~--l~~l~~L~~L~L~~N~l~~-~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 183 NKISDISP--LASLPNLIEVHLKNNQISD-VS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp SCCCCCGG--GGGCTTCCEEECTTSCCCB-CG--GGTTCTTCCEEEEEEEEEE
T ss_pred CccCcChh--hcCCCCCCEEEccCCccCc-cc--cccCCCCCCEEEccCCeee
Confidence 66654322 5666666666666666653 22 2556666666666666665
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.82 E-value=2e-19 Score=179.14 Aligned_cols=173 Identities=24% Similarity=0.373 Sum_probs=80.3
Q ss_pred CCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCE
Q 038036 159 GNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKS 238 (638)
Q Consensus 159 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 238 (638)
..+++|++|++++|.+.+ ++. +..+++|++|++++|.+.+. ..+..+++|++|++++|.+++. + .+..+++|++
T Consensus 60 ~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~ 133 (308)
T 1h6u_A 60 QYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQV 133 (308)
T ss_dssp GGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCE
T ss_pred hccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCE
Confidence 334444444444444432 221 44444444444444444422 1344444444444444444432 1 2444455555
Q ss_pred EEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCc
Q 038036 239 LQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNK 318 (638)
Q Consensus 239 L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~ 318 (638)
|++++|.+++..+ +..+++|+.|++++|.+.+ ++. +..+++|+.|++++|.+++..+ +..+++|++|++++|.
T Consensus 134 L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~ 206 (308)
T 1h6u_A 134 LYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQ 206 (308)
T ss_dssp EECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSC
T ss_pred EECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCc
Confidence 5555555543221 4455555555555555442 221 4455555555555555543222 4455555555555555
Q ss_pred ccccCchhhhcCCCCCEEEccCCcCCCC
Q 038036 319 IVGQISPEILALESLSYLSITNNNFSNI 346 (638)
Q Consensus 319 i~~~~~~~l~~l~~L~~L~L~~n~l~~~ 346 (638)
+++.. .+..+++|+.|++++|+++..
T Consensus 207 l~~~~--~l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 207 ISDVS--PLANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp CCBCG--GGTTCTTCCEEEEEEEEEECC
T ss_pred cCccc--cccCCCCCCEEEccCCeeecC
Confidence 55332 245555666666666555543
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=1.8e-19 Score=183.06 Aligned_cols=244 Identities=15% Similarity=0.068 Sum_probs=159.6
Q ss_pred cCccceEECCCCCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHH
Q 038036 25 CFWEGIKCDSKARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSS 104 (638)
Q Consensus 25 ~~w~g~~c~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~ 104 (638)
|.|..|.|. +++++ .+|..+ .+++++|+|++|+|+ .++.+.|.++++|++|+|++|++.+.++..
T Consensus 9 C~~~~v~C~-----------~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~ 73 (350)
T 4ay9_X 9 CSNRVFLCQ-----------ESKVT-EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEAD 73 (350)
T ss_dssp EETTEEEEE-----------STTCC-SCCTTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTT
T ss_pred eeCCEEEec-----------CCCCC-ccCcCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChh
Confidence 556666663 44444 456545 367899999999998 788888888999999999999887677776
Q ss_pred HHhcCCCCcE-EEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEccc-ccccccCCccc
Q 038036 105 FFQLAENLIT-LNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGF-NYLSGSIPDDI 182 (638)
Q Consensus 105 ~~~~~~~L~~-L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~~ 182 (638)
.|..++++++ +.+.+|++....+..+. .+++|++|++++|.+....+..+.....+..+++.+ +.+....+..|
T Consensus 74 ~f~~L~~l~~~l~~~~N~l~~l~~~~f~----~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f 149 (350)
T 4ay9_X 74 VFSNLPKLHEIRIEKANNLLYINPEAFQ----NLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 149 (350)
T ss_dssp SBCSCTTCCEEEEEEETTCCEECTTSBC----CCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSS
T ss_pred HhhcchhhhhhhcccCCcccccCchhhh----hccccccccccccccccCCchhhcccchhhhhhhccccccccccccch
Confidence 7777777664 55566777766665544 778888888888888765555666666777777755 34553333445
Q ss_pred cCCC-CCCEEEccCCCCccccCccccCCCCCCEEEeec-CcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCC
Q 038036 183 SAAT-SLQEISLPGNQLSGAISDGVGNLTSLSMLDLQS-NKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNL 260 (638)
Q Consensus 183 ~~l~-~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L 260 (638)
..+. .+++|++++|.++.+ +.......+|+++++.+ |.++.+.+..|..+++|++|++++|+++...+.. +.+|
T Consensus 150 ~~~~~~l~~L~L~~N~i~~i-~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L 225 (350)
T 4ay9_X 150 VGLSFESVILWLNKNGIQEI-HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENL 225 (350)
T ss_dssp TTSBSSCEEEECCSSCCCEE-CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTC
T ss_pred hhcchhhhhhccccccccCC-ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccc
Confidence 5543 577778888877744 33333455677777764 4555444455677777777777777777432222 3455
Q ss_pred cEEEccCcccccccCcccccCCCCccEEecCCC
Q 038036 261 ITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNN 293 (638)
Q Consensus 261 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n 293 (638)
+.|.+.++.-...+| .+..+++|+.+++.++
T Consensus 226 ~~L~~l~~~~l~~lP--~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 226 KKLRARSTYNLKKLP--TLEKLVALMEASLTYP 256 (350)
T ss_dssp CEEECTTCTTCCCCC--CTTTCCSCCEEECSCH
T ss_pred hHhhhccCCCcCcCC--CchhCcChhhCcCCCC
Confidence 555554443333444 3556666777766654
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=1.1e-18 Score=177.40 Aligned_cols=203 Identities=16% Similarity=0.187 Sum_probs=129.6
Q ss_pred CEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccC-ccccCCCCCCE-EEee
Q 038036 141 KILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAIS-DGVGNLTSLSM-LDLQ 218 (638)
Q Consensus 141 ~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~l~~l~~L~~-L~l~ 218 (638)
++++.++++++ .+|..+ .+++++|++++|+++...+.+|.++++|++|+|++|.+.+.++ ..|.+++++++ +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 45666666666 455544 2467777777777764434456777777777777777654433 45666766654 4455
Q ss_pred cCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCc-ccccccCcccccCCC-CccEEecCCCccc
Q 038036 219 SNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRIN-NFRGDLSAYNFSTLH-NLHTIDLGNNNFT 296 (638)
Q Consensus 219 ~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~-~L~~L~l~~n~i~ 296 (638)
+|+++.+.|..|..+++|++|++++|++....+..+....++..|++.++ .+. .++...|..+. .++.|++++|+++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSCCC
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc-cccccchhhcchhhhhhcccccccc
Confidence 57777666667777777777777777777555555555666777777553 343 45544555543 5777888888877
Q ss_pred ccccccCcCCCCCCEEEcCC-CcccccCchhhhcCCCCCEEEccCCcCCCCcc
Q 038036 297 GSFPLTLTSCKVLTAIRLSR-NKIVGQISPEILALESLSYLSITNNNFSNITG 348 (638)
Q Consensus 297 ~~~~~~l~~~~~L~~L~L~~-n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 348 (638)
. ++.......+|+++++.+ |.++...+..|..+++|+.|++++|+++.++.
T Consensus 168 ~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~ 219 (350)
T 4ay9_X 168 E-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS 219 (350)
T ss_dssp E-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS
T ss_pred C-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh
Confidence 4 444444456677777764 55554444556777788888888887776653
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=7.9e-19 Score=164.34 Aligned_cols=183 Identities=24% Similarity=0.255 Sum_probs=120.5
Q ss_pred cCccceEECCCCCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHH
Q 038036 25 CFWEGIKCDSKARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSS 104 (638)
Q Consensus 25 ~~w~g~~c~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~ 104 (638)
|.|.++.|.. ++++ .+|..+ .++|++|++++|.++ .++...|..+++|++|++++|+++ .++..
T Consensus 7 C~~~~v~c~~-----------~~l~-~~p~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~ 70 (208)
T 2o6s_A 7 CSGTTVECYS-----------QGRT-SVPTGI--PAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQ-SLPNG 70 (208)
T ss_dssp EETTEEECCS-----------SCCS-SCCSCC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCC-CCCTT
T ss_pred ECCCEEEecC-----------CCcc-CCCCCC--CCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccC-ccChh
Confidence 6788888853 2222 234333 358889999999887 577777777888888888888887 45555
Q ss_pred HHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccC
Q 038036 105 FFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISA 184 (638)
Q Consensus 105 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 184 (638)
.+..+++|++|++++|.+++..+..+. .+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..
T Consensus 71 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 146 (208)
T 2o6s_A 71 VFNKLTSLTYLNLSTNQLQSLPNGVFD----KLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDR 146 (208)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTT----TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred hcCCCCCcCEEECCCCcCCccCHhHhc----CccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhcc
Confidence 556677777777777777654444333 5677777777777777555555666777777777777766544444666
Q ss_pred CCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCC
Q 038036 185 ATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLT 234 (638)
Q Consensus 185 l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 234 (638)
+++|++|++++|.+.. .++.|++|+++.|.+++.+|..++.++
T Consensus 147 l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 147 LTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp CTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred CCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCcccc
Confidence 6677777777665442 344566666666666666665555443
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.78 E-value=4.2e-19 Score=189.65 Aligned_cols=207 Identities=22% Similarity=0.277 Sum_probs=137.2
Q ss_pred CCCCCCCCCCc-----Cccce-EECCCCCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceec
Q 038036 15 PLNWSFSTDCC-----FWEGI-KCDSKARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLE 88 (638)
Q Consensus 15 ~~~w~~~~~~~-----~w~g~-~c~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~ 88 (638)
+.+|....++| .|.++ .|. ..+++.|+++++.+++ +|..+. ++|++|+|++|.++ .+| ..+++|+
T Consensus 33 l~~W~~~~~~~~~~~~~~~~l~~C~-~~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip----~~l~~L~ 103 (571)
T 3cvr_A 33 WDKWEKQALPGENRNEAVSLLKECL-INQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP----ELPASLE 103 (571)
T ss_dssp HHHHHTTCCTTCCHHHHHHHHHHHH-HTTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC----CCCTTCC
T ss_pred HHHHhccCCccccccchhhhccccc-cCCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc----cccCCCC
Confidence 34576566667 68888 674 3588999999998876 666553 78999999999887 677 2467788
Q ss_pred EEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEE
Q 038036 89 TLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFR 168 (638)
Q Consensus 89 ~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~ 168 (638)
+|+|++|.|++ +|. + ..+|++|++++|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|+
T Consensus 104 ~L~Ls~N~l~~-ip~-l---~~~L~~L~Ls~N~l~~-lp~-------~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~ 166 (571)
T 3cvr_A 104 YLDACDNRLST-LPE-L---PASLKHLDVDNNQLTM-LPE-------LPALLEYINADNNQLTM-LPE---LPTSLEVLS 166 (571)
T ss_dssp EEECCSSCCSC-CCC-C---CTTCCEEECCSSCCSC-CCC-------CCTTCCEEECCSSCCSC-CCC---CCTTCCEEE
T ss_pred EEEccCCCCCC-cch-h---hcCCCEEECCCCcCCC-CCC-------cCccccEEeCCCCccCc-CCC---cCCCcCEEE
Confidence 88888888874 555 2 2278888888887775 333 25777888888887774 444 456777777
Q ss_pred cccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCC-------CEEEeecCcCcccCCcccCCCCCCCEEEc
Q 038036 169 AGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSL-------SMLDLQSNKFSGLIPQDIGKLTNLKSLQL 241 (638)
Q Consensus 169 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L-------~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 241 (638)
+++|.+++ +|. +. ++|++|++++|.++ .+|. +.. +| ++|++++|.++. +|..+..+++|+.|++
T Consensus 167 Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L 237 (571)
T 3cvr_A 167 VRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIIL 237 (571)
T ss_dssp CCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEEC
T ss_pred CCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEe
Confidence 77777774 555 44 67777777777776 4444 333 44 666666666653 3444555666666666
Q ss_pred cCCCCCCCcchhhcC
Q 038036 242 HTNSLSGFLPQSLMN 256 (638)
Q Consensus 242 ~~n~i~~~~~~~l~~ 256 (638)
++|.+++..|..+..
T Consensus 238 ~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 238 EDNPLSSRIRESLSQ 252 (571)
T ss_dssp CSSSCCHHHHHHHHH
T ss_pred eCCcCCCcCHHHHHH
Confidence 666665555555443
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.77 E-value=3.7e-18 Score=159.77 Aligned_cols=161 Identities=24% Similarity=0.201 Sum_probs=87.8
Q ss_pred CCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEe
Q 038036 138 SSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDL 217 (638)
Q Consensus 138 ~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l 217 (638)
++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 34555555555555444444555555555555555555333334455555666666655555444444555566666666
Q ss_pred ecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCcccc
Q 038036 218 QSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTG 297 (638)
Q Consensus 218 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~ 297 (638)
++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+. ..+++|+.|+++.|.+++
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~--------~~~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD--------CTCPGIRYLSEWINKHSG 179 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC--------CCTTTTHHHHHHHHHCTT
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee--------cCCCCHHHHHHHHHhCCc
Confidence 666555544444555566666666666665444444555666666666666443 233455555666666665
Q ss_pred cccccCcCC
Q 038036 298 SFPLTLTSC 306 (638)
Q Consensus 298 ~~~~~l~~~ 306 (638)
.+|.+++.+
T Consensus 180 ~ip~~~~~l 188 (208)
T 2o6s_A 180 VVRNSAGSV 188 (208)
T ss_dssp TBBCTTSSB
T ss_pred eeeccCccc
Confidence 555555443
No 100
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.75 E-value=1.4e-18 Score=163.74 Aligned_cols=156 Identities=22% Similarity=0.248 Sum_probs=122.8
Q ss_pred cEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcC-ccccCCCCCCEEEccCCcCccccchhhhhhccchhhhccc
Q 038036 390 LVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIP-GWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKN 468 (638)
Q Consensus 390 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~ 468 (638)
+.++++++.+.. +|..+ .+.+++|++++|.+++..+ ..|..+++|++|++++|.+++..+..|.++++|+
T Consensus 14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~------ 84 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVN------ 84 (220)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCC------
T ss_pred CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCC------
Confidence 466777776664 34333 2456788888888876644 4577888888888888888877776777777776
Q ss_pred cCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCC
Q 038036 469 RADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNL 548 (638)
Q Consensus 469 ~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 548 (638)
.|++++|.+++..+..|.++++|++|+|++|.+++..|..|..+++|
T Consensus 85 ---------------------------------~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 131 (220)
T 2v70_A 85 ---------------------------------EILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSV 131 (220)
T ss_dssp ---------------------------------EEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTC
T ss_pred ---------------------------------EEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccC
Confidence 68888888887777778889999999999999988778888889999
Q ss_pred CeeeCCCCcceecCCccccccCCCCeEecccCceeecCC
Q 038036 549 EGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIP 587 (638)
Q Consensus 549 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p 587 (638)
+.|+|++|++++..|..|..+++|+.|++++|++.+..+
T Consensus 132 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 132 RLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 999999999988878888889999999999999886554
No 101
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=8.7e-18 Score=158.31 Aligned_cols=153 Identities=27% Similarity=0.285 Sum_probs=108.2
Q ss_pred cEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhhccchhhhcccc
Q 038036 390 LVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNR 469 (638)
Q Consensus 390 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~ 469 (638)
+.++++++.+.. +|..+. ++|+.|++++|.+++..+..|..+++|++|+|++|.+.+..|..|.++++|+
T Consensus 14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~------- 83 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLN------- 83 (220)
T ss_dssp TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCC-------
T ss_pred CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCC-------
Confidence 345555555553 333222 5677777777777766666677777777777777777766677777666665
Q ss_pred CCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCC
Q 038036 470 ADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLE 549 (638)
Q Consensus 470 ~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 549 (638)
.|++++|.++...+..|.++++|++|+|++|.+++..|..|..+++|+
T Consensus 84 --------------------------------~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 131 (220)
T 2v9t_B 84 --------------------------------SLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLN 131 (220)
T ss_dssp --------------------------------EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred --------------------------------EEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCC
Confidence 577777777755555567788888888888888777777788888888
Q ss_pred eeeCCCCcceecCCccccccCCCCeEecccCceee
Q 038036 550 GLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQG 584 (638)
Q Consensus 550 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~ 584 (638)
.|+|++|.+++..+..+..+++|+.|++++|++..
T Consensus 132 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 132 LLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred EEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 88888888886666677778888888888887763
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.74 E-value=4.8e-17 Score=173.76 Aligned_cols=179 Identities=25% Similarity=0.353 Sum_probs=111.9
Q ss_pred CCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCc
Q 038036 61 HLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSL 140 (638)
Q Consensus 61 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L 140 (638)
++++|++++|.+++ +|...+ ++|++|+|++|.|+ .+| ..+++|++|++++|.+++ +|. +. . +|
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~---~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~----~--~L 122 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP---PQITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-LPE-LP----A--SL 122 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC---TTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC-CC----T--TC
T ss_pred CccEEEeCCCCCCc-cCHhHc---CCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-cch-hh----c--CC
Confidence 77788888887774 665543 56777777777777 555 336777777777777775 343 22 2 67
Q ss_pred CEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecC
Q 038036 141 KILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSN 220 (638)
Q Consensus 141 ~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n 220 (638)
++|++++|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|.+++ +|. +. ++|++|++++|
T Consensus 123 ~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N 190 (571)
T 3cvr_A 123 KHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTN 190 (571)
T ss_dssp CEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSS
T ss_pred CEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCC
Confidence 777777777764 444 46677777777777763 454 45667777777777664 444 44 66777777777
Q ss_pred cCcccCCcccCCCCCC-------CEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccc
Q 038036 221 KFSGLIPQDIGKLTNL-------KSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGD 273 (638)
Q Consensus 221 ~l~~~~~~~l~~l~~L-------~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~ 273 (638)
.++ .+|. +.. +| +.|++++|.++ .+|..+..+++|+.|++++|.+.+.
T Consensus 191 ~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 191 LLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp CCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHH
T ss_pred CCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCc
Confidence 666 3343 332 44 66666666666 3455555566666666666665543
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.73 E-value=3.4e-17 Score=155.39 Aligned_cols=164 Identities=23% Similarity=0.243 Sum_probs=95.3
Q ss_pred CCCCCCCCCCcCccceEECCCCCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCC
Q 038036 15 PLNWSFSTDCCFWEGIKCDSKARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSY 94 (638)
Q Consensus 15 ~~~w~~~~~~~~w~g~~c~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~ 94 (638)
...|..+...|+|.++.|.. +.+ +.+|..+. ++|++|+|++|.+. .++...|..+++|++|+|++
T Consensus 9 ~~~~~~~~~~Cs~~~v~c~~-----------~~l-~~ip~~~~--~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~ 73 (229)
T 3e6j_A 9 HSAACPSQCSCSGTTVDCRS-----------KRH-ASVPAGIP--TNAQILYLHDNQIT-KLEPGVFDSLINLKELYLGS 73 (229)
T ss_dssp --CCCCTTCEEETTEEECTT-----------SCC-SSCCSCCC--TTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred hhccCCCCCEEeCCEeEccC-----------CCc-CccCCCCC--CCCCEEEcCCCccC-ccCHHHhhCccCCcEEECCC
Confidence 44566678889999999853 222 23454343 78888999988888 45555667777777777777
Q ss_pred ccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccc
Q 038036 95 NSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYL 174 (638)
Q Consensus 95 n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~ 174 (638)
|.++ .++...+..+++|++|+|++|++++..+..+. .+++|++|++++|.++ .+|..+..+++|++|++++|.+
T Consensus 74 N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~----~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l 147 (229)
T 3e6j_A 74 NQLG-ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFD----RLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL 147 (229)
T ss_dssp SCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT----TCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCC
T ss_pred CCCC-CcChhhcccCCCcCEEECCCCcCCccChhHhC----cchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcC
Confidence 7776 44444455566666666666665544333322 4555555555555555 4444445555555555555555
Q ss_pred cccCCccccCCCCCCEEEccCCCCc
Q 038036 175 SGSIPDDISAATSLQEISLPGNQLS 199 (638)
Q Consensus 175 ~~~~~~~~~~l~~L~~L~L~~n~i~ 199 (638)
.+..+..+..+++|++|++++|.+.
T Consensus 148 ~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 148 KSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CccCHHHHhCCCCCCEEEeeCCCcc
Confidence 4333333444455555555554443
No 104
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=1.3e-17 Score=170.12 Aligned_cols=156 Identities=27% Similarity=0.265 Sum_probs=73.0
Q ss_pred ccEEEeeCCcccccchHHhh-cCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhhccchhhhcc
Q 038036 389 LLVLGIGDCEIKGQIPTWLA-RLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVK 467 (638)
Q Consensus 389 L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~ 467 (638)
++.|++++|.+.+..+..+. .+++|+.|+|++|++++..+..|..+++|++|+|++|.+....+..|.++++|+
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~----- 115 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALE----- 115 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC-----
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCC-----
Confidence 34444444444433333343 445555555555555544444455555555555555555444444444444443
Q ss_pred ccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhh---hC
Q 038036 468 NRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQI---SQ 544 (638)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~---~~ 544 (638)
.|++++|.+++..+..|.++++|++|+|++|.+++..+..| ..
T Consensus 116 ----------------------------------~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~ 161 (361)
T 2xot_A 116 ----------------------------------VLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNK 161 (361)
T ss_dssp ----------------------------------EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----
T ss_pred ----------------------------------EEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCccc
Confidence 34455555544444455555555555555555553222222 34
Q ss_pred CCCCCeeeCCCCcceecCCccccccCC--CCeEecccCcee
Q 038036 545 LTNLEGLDLSENNLHGEIPLSIIDLHF--LSSFSVANNDLQ 583 (638)
Q Consensus 545 l~~L~~L~Ls~n~l~~~~p~~l~~l~~--L~~L~l~~n~l~ 583 (638)
+++|+.|+|++|+++...+..+..++. ++.|++++|++.
T Consensus 162 l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 162 LPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 555555555555555333344444444 245555555543
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.73 E-value=4.4e-17 Score=160.66 Aligned_cols=75 Identities=27% Similarity=0.424 Sum_probs=42.6
Q ss_pred EEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecccCce
Q 038036 503 IYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDL 582 (638)
Q Consensus 503 L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l 582 (638)
|++++|.+++. ..+..+++|++|++++|.+++..+ +..+++|+.|++++|.+++ +| .+..+++|+.|++++|++
T Consensus 139 L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 139 LYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp EECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEE
T ss_pred EEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcc
Confidence 44444444422 345556666666666666654333 6666666666666666663 33 356666666666666666
Q ss_pred e
Q 038036 583 Q 583 (638)
Q Consensus 583 ~ 583 (638)
+
T Consensus 213 ~ 213 (291)
T 1h6t_A 213 L 213 (291)
T ss_dssp E
T ss_pred c
Confidence 5
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=7.7e-17 Score=158.88 Aligned_cols=128 Identities=28% Similarity=0.400 Sum_probs=55.5
Q ss_pred CCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCC
Q 038036 158 LGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLK 237 (638)
Q Consensus 158 l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 237 (638)
+..+++|++|++++|.+.+ ++ .+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++. ..+..+++|+
T Consensus 86 l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~ 159 (291)
T 1h6t_A 86 LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLD 159 (291)
T ss_dssp GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCC
Confidence 3344444444444444332 11 234444444444444444422 2334444444444444444433 2344444444
Q ss_pred EEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCccc
Q 038036 238 SLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFT 296 (638)
Q Consensus 238 ~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~ 296 (638)
+|++++|.+++..+ +..+++|+.|++++|.+. .++ .+..+++|+.|++++|+++
T Consensus 160 ~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~-~l~--~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 160 TLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-DLR--ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-BCG--GGTTCTTCSEEEEEEEEEE
T ss_pred EEEccCCccccchh--hcCCCccCEEECCCCcCC-CCh--hhccCCCCCEEECcCCccc
Confidence 44444444443322 444445555555555444 222 2444455555555555444
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.72 E-value=3.5e-17 Score=155.29 Aligned_cols=156 Identities=24% Similarity=0.211 Sum_probs=118.8
Q ss_pred ccEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhhccchhhhccc
Q 038036 389 LLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKN 468 (638)
Q Consensus 389 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~ 468 (638)
-+.++.+++.+.. +|..+ .++|++|+|++|.+.+..+..+..+++|++|+|++|.+....+..|..++.|+
T Consensus 21 ~~~v~c~~~~l~~-ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~------ 91 (229)
T 3e6j_A 21 GTTVDCRSKRHAS-VPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLT------ 91 (229)
T ss_dssp TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC------
T ss_pred CCEeEccCCCcCc-cCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcC------
Confidence 4456666666553 33322 26788888888888877777777888888888888888655555666666665
Q ss_pred cCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCC
Q 038036 469 RADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNL 548 (638)
Q Consensus 469 ~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 548 (638)
.|++++|.+++..+..|..+++|++|+|++|.++ .+|..+..+++|
T Consensus 92 ---------------------------------~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L 137 (229)
T 3e6j_A 92 ---------------------------------VLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHL 137 (229)
T ss_dssp ---------------------------------EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTC
T ss_pred ---------------------------------EEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCC
Confidence 5778888887666667788889999999999988 778888888999
Q ss_pred CeeeCCCCcceecCCccccccCCCCeEecccCceeecCC
Q 038036 549 EGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIP 587 (638)
Q Consensus 549 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p 587 (638)
+.|+|++|++++..+..+..+++|+.|++++|++.+..+
T Consensus 138 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 138 THLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 999999999986666778888889999999998875544
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.71 E-value=7.2e-17 Score=152.02 Aligned_cols=111 Identities=22% Similarity=0.300 Sum_probs=52.4
Q ss_pred CCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEE
Q 038036 137 LSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLD 216 (638)
Q Consensus 137 l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ 216 (638)
+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|+
T Consensus 56 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 135 (220)
T 2v70_A 56 LPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLS 135 (220)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEE
T ss_pred CCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEE
Confidence 33444444444444433333444444444444444444433333444444555555555554444444445555555555
Q ss_pred eecCcCcccCCcccCCCCCCCEEEccCCCCC
Q 038036 217 LQSNKFSGLIPQDIGKLTNLKSLQLHTNSLS 247 (638)
Q Consensus 217 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~ 247 (638)
+++|.+++..|..|..+++|++|++++|.+.
T Consensus 136 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 136 LYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 5555555444445555555555555555544
No 109
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=4.9e-17 Score=150.50 Aligned_cols=153 Identities=16% Similarity=0.294 Sum_probs=122.7
Q ss_pred CCCCccEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhhccchhh
Q 038036 385 AFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQ 464 (638)
Q Consensus 385 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l 464 (638)
.+++|+.|++++|.+. .++ .+..+++|++|++++|.+.. +..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~-- 115 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT-- 115 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC--
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCC--
Confidence 4567888888888887 444 57888889999999886652 34678888999999999988876777777777776
Q ss_pred hccccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCe-eeecCChhhh
Q 038036 465 EVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNN-FSGEIPDQIS 543 (638)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~ 543 (638)
.|++++|.+++..+..+..+++|++|++++|. ++ .+| .+.
T Consensus 116 -------------------------------------~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~ 156 (197)
T 4ezg_A 116 -------------------------------------LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLK 156 (197)
T ss_dssp -------------------------------------EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGG
T ss_pred -------------------------------------EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhc
Confidence 68888888887788889999999999999998 65 555 688
Q ss_pred CCCCCCeeeCCCCcceecCCccccccCCCCeEecccCceee
Q 038036 544 QLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQG 584 (638)
Q Consensus 544 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~ 584 (638)
.+++|+.|++++|++++ ++ .+..+++|+.|++++|++.+
T Consensus 157 ~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 157 TLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp GCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred CCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 99999999999999985 44 78889999999999999763
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.71 E-value=2e-16 Score=148.93 Aligned_cols=131 Identities=27% Similarity=0.318 Sum_probs=54.1
Q ss_pred CCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEcc
Q 038036 163 KLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLH 242 (638)
Q Consensus 163 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 242 (638)
.+++|++++|.+.+..+..|..+++|++|++++|.+.+..|..|..+++|++|++++|.++.+.+..|..+++|++|+++
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 112 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN 112 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence 34444444444443333334444444444444444443334444444444444444444443333333444444444444
Q ss_pred CCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCc
Q 038036 243 TNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNN 294 (638)
Q Consensus 243 ~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~ 294 (638)
+|.+++..+..+..+++|+.|++++|.+. .++...+..+++|+.|++++|.
T Consensus 113 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 113 ANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCEeCHHHcCCCCCCCEEECCCCcCC-EECHHHHhCCCCCCEEEeCCCC
Confidence 44444333334444444444444444443 1222233334444444444443
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.70 E-value=1.5e-16 Score=162.08 Aligned_cols=88 Identities=19% Similarity=0.208 Sum_probs=34.5
Q ss_pred CCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEE
Q 038036 160 NCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSL 239 (638)
Q Consensus 160 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 239 (638)
.+++|++|++++|.+.+..+..|..+++|++|++++|.+....+..|..+++|++|++++|.++...+..|..+++|++|
T Consensus 62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L 141 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKL 141 (361)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEE
Confidence 33333344443333333333333333444444444444333333333334444444444444433333334444444444
Q ss_pred EccCCCCC
Q 038036 240 QLHTNSLS 247 (638)
Q Consensus 240 ~L~~n~i~ 247 (638)
+|++|.++
T Consensus 142 ~L~~N~l~ 149 (361)
T 2xot_A 142 YLSQNQIS 149 (361)
T ss_dssp ECCSSCCC
T ss_pred ECCCCcCC
Confidence 44444443
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.68 E-value=9.5e-17 Score=173.45 Aligned_cols=190 Identities=22% Similarity=0.304 Sum_probs=125.0
Q ss_pred CCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCC
Q 038036 60 THLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSS 139 (638)
Q Consensus 60 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~ 139 (638)
..+..+.+..+.+.+.++ +..+..|+.|++++|.++ .++. +..+++|++|+|++|++.+..+ + ..+++
T Consensus 21 ~~l~~l~l~~~~i~~~~~---~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~--l----~~l~~ 88 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--L----TNLKN 88 (605)
T ss_dssp HHHHHHHTTCSCTTSEEC---HHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG--G----GGCTT
T ss_pred HHHHHHhccCCCcccccc---hhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh--h----ccCCC
Confidence 344455666666653222 335667777778777776 3332 4557777777777777765443 2 25777
Q ss_pred cCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeec
Q 038036 140 LKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQS 219 (638)
Q Consensus 140 L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~ 219 (638)
|++|+|++|.+.+ ++ .+..+++|++|++++|.+.+ + ..+..+++|+.|+|++|.+.+. ..+..+++|++|++++
T Consensus 89 L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~ 162 (605)
T 1m9s_A 89 LGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLED 162 (605)
T ss_dssp CCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCS
T ss_pred CCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcC
Confidence 7777777777763 23 56777777777777777763 2 3466777777777777777644 4566777777777777
Q ss_pred CcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccc
Q 038036 220 NKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFR 271 (638)
Q Consensus 220 n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~ 271 (638)
|.+.+..| +..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.
T Consensus 163 N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 163 NQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp SCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEE
T ss_pred CcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCc
Confidence 77765544 66777777777777777643 34666777777777777665
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.68 E-value=1.7e-16 Score=171.53 Aligned_cols=188 Identities=23% Similarity=0.279 Sum_probs=134.8
Q ss_pred EEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEEccc
Q 038036 40 HLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSH 119 (638)
Q Consensus 40 ~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~ 119 (638)
.+.+....+.+.++ +..+++|+.|++++|.+. .++ .+..+++|+.|+|++|.+++..+ +..+++|++|+|++
T Consensus 25 ~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 25 KDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ--GIQYLPNVTKLFLNGNKLTDIKP---LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCT--TGGGCTTCCEEECTTSCCCCCGG---GGGCTTCCEEECCS
T ss_pred HHhccCCCcccccc--hhcCCCCCEEECcCCCCC-CCh--HHccCCCCCEEEeeCCCCCCChh---hccCCCCCEEECcC
Confidence 34445554443322 456778888888888876 444 36677888888888888874433 55688888888888
Q ss_pred CcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCc
Q 038036 120 NMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLS 199 (638)
Q Consensus 120 n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~ 199 (638)
|.+.+. +. +..+++|++|++++|.+.+ + ..+..+++|+.|++++|.+.+. ..+..+++|++|+|++|.+.
T Consensus 97 N~l~~l-~~-----l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~ 166 (605)
T 1m9s_A 97 NKIKDL-SS-----LKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 166 (605)
T ss_dssp SCCCCC-TT-----STTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCC
T ss_pred CCCCCC-hh-----hccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCC
Confidence 887742 22 2367888888888888874 2 4577788888888888888743 56778888888888888887
Q ss_pred cccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCC
Q 038036 200 GAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGF 249 (638)
Q Consensus 200 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~ 249 (638)
+..| +..+++|++|++++|.+++. ..+..+++|+.|+|++|.+...
T Consensus 167 ~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 167 DIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred Cchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 6554 77788888888888888764 3577788888888888877643
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=2.2e-16 Score=146.15 Aligned_cols=64 Identities=25% Similarity=0.421 Sum_probs=25.2
Q ss_pred ccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCC
Q 038036 182 ISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNS 245 (638)
Q Consensus 182 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 245 (638)
+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 84 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~ 147 (197)
T 4ezg_A 84 ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG 147 (197)
T ss_dssp GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCT
T ss_pred hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCC
Confidence 3334444444444444433333333334444444444444333333333334444444444443
No 115
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.67 E-value=6.7e-17 Score=148.77 Aligned_cols=129 Identities=22% Similarity=0.327 Sum_probs=63.1
Q ss_pred cEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCc-cccCCCCCCEEEccCCcCccccchhhhhhccchhhhccc
Q 038036 390 LVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPG-WLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKN 468 (638)
Q Consensus 390 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~ 468 (638)
+.++++++.+. .+|..+. ++|++|++++|.+++..+. .+..+++|++|+|++|.+++..|..|.+++.|+
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~------ 81 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQ------ 81 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCC------
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCC------
Confidence 45555555553 2333222 2555555555555544332 355555555555555555544444444444443
Q ss_pred cCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCC
Q 038036 469 RADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNL 548 (638)
Q Consensus 469 ~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 548 (638)
.|++++|++++..+..|.++++|++|+|++|++++..|..|..+++|
T Consensus 82 ---------------------------------~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 128 (192)
T 1w8a_A 82 ---------------------------------ELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSL 128 (192)
T ss_dssp ---------------------------------EEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTC
T ss_pred ---------------------------------EEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCC
Confidence 34444444444444444444445555555554444444444444445
Q ss_pred CeeeCCCCccee
Q 038036 549 EGLDLSENNLHG 560 (638)
Q Consensus 549 ~~L~Ls~n~l~~ 560 (638)
++|++++|++++
T Consensus 129 ~~L~L~~N~l~c 140 (192)
T 1w8a_A 129 TSLNLASNPFNC 140 (192)
T ss_dssp CEEECTTCCBCC
T ss_pred CEEEeCCCCccC
Confidence 555555444443
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.66 E-value=8e-19 Score=188.57 Aligned_cols=122 Identities=25% Similarity=0.279 Sum_probs=83.7
Q ss_pred CCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhhccchhhhccccCCCCCCcccccccccchhhhhc
Q 038036 412 KLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQ 491 (638)
Q Consensus 412 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 491 (638)
.|+.|++++|.+++ +|. +..+++|+.|+|++|.++ .+|..++++++|+
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~----------------------------- 489 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLE----------------------------- 489 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCC-----------------------------
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCC-----------------------------
Confidence 47777787777774 454 777777777777777776 5666666666665
Q ss_pred ccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecC-ChhhhCCCCCCeeeCCCCcceecCCc---ccc
Q 038036 492 QYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEI-PDQISQLTNLEGLDLSENNLHGEIPL---SII 567 (638)
Q Consensus 492 ~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~Ls~n~l~~~~p~---~l~ 567 (638)
.|++++|.+++ +| .++++++|++|+|++|.+++.. |..+..+++|+.|+|++|++++..|. .+.
T Consensus 490 ----------~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~ 557 (567)
T 1dce_A 490 ----------VLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 557 (567)
T ss_dssp ----------EEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHH
T ss_pred ----------EEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHH
Confidence 56677777764 55 6777777777777777777555 77777777777777777777755442 133
Q ss_pred ccCCCCeEec
Q 038036 568 DLHFLSSFSV 577 (638)
Q Consensus 568 ~l~~L~~L~l 577 (638)
.+++|+.|++
T Consensus 558 ~lp~L~~L~l 567 (567)
T 1dce_A 558 MLPSVSSILT 567 (567)
T ss_dssp HCTTCSEEEC
T ss_pred HCcccCccCC
Confidence 4667776653
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.63 E-value=8.9e-16 Score=148.75 Aligned_cols=167 Identities=21% Similarity=0.254 Sum_probs=81.8
Q ss_pred CCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCC
Q 038036 60 THLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSS 139 (638)
Q Consensus 60 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~ 139 (638)
.+++.++++++.++ .++ .+..+++|++|++++|.++ .++ .+..+++|++|++++|++++..+ + ..+++
T Consensus 19 ~~l~~l~l~~~~i~-~~~--~~~~l~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~L~~N~i~~~~~--l----~~l~~ 86 (263)
T 1xeu_A 19 ANAVKQNLGKQSVT-DLV--SQKELSGVQNFNGDNSNIQ-SLA--GMQFFTNLKELHLSHNQISDLSP--L----KDLTK 86 (263)
T ss_dssp HHHHHHHHTCSCTT-SEE--CHHHHTTCSEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCCCGG--G----TTCSS
T ss_pred HHHHHHHhcCCCcc-ccc--chhhcCcCcEEECcCCCcc-cch--HHhhCCCCCEEECCCCccCCChh--h----ccCCC
Confidence 33444444444444 222 2334444555555555544 222 12334555555555555543322 1 14555
Q ss_pred cCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeec
Q 038036 140 LKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQS 219 (638)
Q Consensus 140 L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~ 219 (638)
|++|++++|.+++ ++.. .. ++|++|++++|.+++ ++ .+..+++|++|++++|.+++. ..+..+++|++|++++
T Consensus 87 L~~L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~ 159 (263)
T 1xeu_A 87 LEELSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHG 159 (263)
T ss_dssp CCEEECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTT
T ss_pred CCEEECCCCccCC-cCcc-cc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCC
Confidence 5555555555542 2221 11 555555555555553 22 355555566666665555533 2455555666666666
Q ss_pred CcCcccCCcccCCCCCCCEEEccCCCCC
Q 038036 220 NKFSGLIPQDIGKLTNLKSLQLHTNSLS 247 (638)
Q Consensus 220 n~l~~~~~~~l~~l~~L~~L~L~~n~i~ 247 (638)
|.+++. ..+..+++|+.|++++|.++
T Consensus 160 N~i~~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 160 NEITNT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp SCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred CcCcch--HHhccCCCCCEEeCCCCccc
Confidence 655544 34555566666666666555
No 118
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.63 E-value=2.6e-16 Score=158.35 Aligned_cols=126 Identities=13% Similarity=-0.051 Sum_probs=78.4
Q ss_pred CCCccEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhhccchhhh
Q 038036 386 FQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQE 465 (638)
Q Consensus 386 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~ 465 (638)
..++..+.+.+.-...........+++|+.+++++|+++.+.+.+|.++++|++|++.+| +....
T Consensus 201 ~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~-------------- 265 (329)
T 3sb4_A 201 PRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIG-------------- 265 (329)
T ss_dssp GGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEEC--------------
T ss_pred ccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceeh--------------
Confidence 345556666554222222222234788888888888887666677888888888888776 54332
Q ss_pred ccccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCC-eeeCCCCeeeecCChhhhC
Q 038036 466 VKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLH-VLDLSLNNFSGEIPDQISQ 544 (638)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~-~L~Ls~n~l~~~~p~~~~~ 544 (638)
+.+|.++++|+ .+++.+ .++.+.+..|.+
T Consensus 266 -------------------------------------------------~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~ 295 (329)
T 3sb4_A 266 -------------------------------------------------QRVFSNCGRLAGTLELPA-SVTAIEFGAFMG 295 (329)
T ss_dssp -------------------------------------------------TTTTTTCTTCCEEEEECT-TCCEECTTTTTT
T ss_pred -------------------------------------------------HHHhhCChhccEEEEEcc-cceEEchhhhhC
Confidence 33455666666 666666 555455566666
Q ss_pred CCCCCeeeCCCCcceecCCccccccCCCCeEe
Q 038036 545 LTNLEGLDLSENNLHGEIPLSIIDLHFLSSFS 576 (638)
Q Consensus 545 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 576 (638)
+++|+.+++++|.++...+.+|.++++|+.++
T Consensus 296 c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 296 CDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred CccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 66666666666666655556666666666664
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.62 E-value=9.6e-16 Score=140.98 Aligned_cols=155 Identities=21% Similarity=0.219 Sum_probs=126.9
Q ss_pred CEEecCCCccccCcCccccCCCCCCEEEccCCcCccccch-hhhhhccchhhhccccCCCCCCcccccccccchhhhhcc
Q 038036 414 QVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPK-EFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQ 492 (638)
Q Consensus 414 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 492 (638)
+.++++++.++ .+|..+. ++|++|++++|.+.+..+. .|..++.|+
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~------------------------------ 57 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLV------------------------------ 57 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCC------------------------------
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCC------------------------------
Confidence 78999999997 5665443 4999999999999866654 477777776
Q ss_pred cccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCC
Q 038036 493 YNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFL 572 (638)
Q Consensus 493 ~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 572 (638)
.|++++|.+++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++|++++..|..+..+++|
T Consensus 58 ---------~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 128 (192)
T 1w8a_A 58 ---------KLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSL 128 (192)
T ss_dssp ---------EEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTC
T ss_pred ---------EEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCC
Confidence 79999999998889999999999999999999998888889999999999999999999999999999999
Q ss_pred CeEecccCceeecCCCCCcCCCcCCCccCCCCCCCCCC
Q 038036 573 SSFSVANNDLQGQIPSGGQFLTFPSSSFEGNPRFCGDI 610 (638)
Q Consensus 573 ~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~ 610 (638)
+.|++++|++.+..+.......+....+.++...|+.+
T Consensus 129 ~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 129 TSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp CEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred CEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence 99999999998776632211122233445555667654
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=1.2e-15 Score=137.27 Aligned_cols=85 Identities=21% Similarity=0.202 Sum_probs=58.5
Q ss_pred eEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecC-ChhhhCCCCCCeeeCCCCcceecCC---ccccccCCCCeEec
Q 038036 502 AIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEI-PDQISQLTNLEGLDLSENNLHGEIP---LSIIDLHFLSSFSV 577 (638)
Q Consensus 502 ~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~Ls~n~l~~~~p---~~l~~l~~L~~L~l 577 (638)
.|++++|.+++.+|..+..+++|++|++++|.+++.. +..+..+++|+.|++++|.+++..+ ..+..+++|+.|++
T Consensus 75 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 154 (168)
T 2ell_A 75 KLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDG 154 (168)
T ss_dssp EEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETT
T ss_pred EEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecC
Confidence 3555555555445666666777888888888877432 2677778888888888888875444 36777888888888
Q ss_pred ccCceeecCC
Q 038036 578 ANNDLQGQIP 587 (638)
Q Consensus 578 ~~n~l~~~~p 587 (638)
++|.+. .+|
T Consensus 155 ~~n~~~-~~~ 163 (168)
T 2ell_A 155 YDREDQ-EAP 163 (168)
T ss_dssp EETTSC-BCC
T ss_pred CCCChh-hcc
Confidence 888776 344
No 121
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.61 E-value=1.8e-15 Score=152.22 Aligned_cols=102 Identities=15% Similarity=0.297 Sum_probs=72.5
Q ss_pred CCCCcEEEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCC-EEEcCCCcccccCchhhhcCCCCCE
Q 038036 257 CTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLT-AIRLSRNKIVGQISPEILALESLSY 335 (638)
Q Consensus 257 l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~-~L~L~~n~i~~~~~~~l~~l~~L~~ 335 (638)
+++|+.+++++|.+. .++...|.++++|+.+++.+| +.......|.+|++|+ .+++.+ .++...+.+|..+++|+.
T Consensus 225 ~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred cCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence 677777887777776 566667777777888877776 6555666677777777 777777 565566677777777777
Q ss_pred EEccCCcCCCCccccccccCCCCCcEEE
Q 038036 336 LSITNNNFSNITGAIRILMGCKNLRMLL 363 (638)
Q Consensus 336 L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 363 (638)
+++..|.++.++. ..+.+|++|+.+.
T Consensus 302 l~l~~n~i~~I~~--~aF~~~~~L~~ly 327 (329)
T 3sb4_A 302 VLATGDKITTLGD--ELFGNGVPSKLIY 327 (329)
T ss_dssp EEECSSCCCEECT--TTTCTTCCCCEEE
T ss_pred EEeCCCccCccch--hhhcCCcchhhhc
Confidence 7777777776654 3456666666654
No 122
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.61 E-value=1.5e-15 Score=147.12 Aligned_cols=123 Identities=24% Similarity=0.324 Sum_probs=53.9
Q ss_pred CCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEe
Q 038036 138 SSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDL 217 (638)
Q Consensus 138 ~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l 217 (638)
.++..++++++.+++. + .+..+++|++|++++|.+. .++ .+..+++|++|++++|.+.+..+ +..+++|++|++
T Consensus 19 ~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 3344445555554422 1 3344455555555555544 233 34445555555555555443322 444455555555
Q ss_pred ecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccc
Q 038036 218 QSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFR 271 (638)
Q Consensus 218 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~ 271 (638)
++|++++. + .+.. ++|++|++++|.+++. ..+..+++|+.|++++|.+.
T Consensus 93 ~~N~l~~l-~-~~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~ 141 (263)
T 1xeu_A 93 NRNRLKNL-N-GIPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLK 141 (263)
T ss_dssp CSSCCSCC-T-TCCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCC
T ss_pred CCCccCCc-C-cccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCC
Confidence 55544432 1 1111 4444444444444421 12444444444444444443
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.60 E-value=1.8e-16 Score=175.83 Aligned_cols=209 Identities=20% Similarity=0.210 Sum_probs=104.0
Q ss_pred CCCC-CCCCcCccceEECCCCCeEEEECCCCCceeeccccCcCCCCCCEEE-----CCCCCCCCCCccccccccceecEE
Q 038036 17 NWSF-STDCCFWEGIKCDSKARVTHLWLPYRGLSGSIYPFIGNLTHLCHLN-----LSHNHLSGPLAINSFSFVIHLETL 90 (638)
Q Consensus 17 ~w~~-~~~~~~w~g~~c~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~-----Ls~n~l~~~~~~~~~~~~~~L~~L 90 (638)
.|.. ....+.|.+..+. .++++.|+|.++.+.. .+..+.....|+.+. ++.|.+. ++...|..+..|++|
T Consensus 154 ~~~~~~~~~~~~~~~~~s-~~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~--~~~~~~~~l~~L~~L 229 (727)
T 4b8c_D 154 QPTGDSTPSGTATNSAVS-TPLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV--MPKDSKYDDQLWHAL 229 (727)
T ss_dssp ------------------------------------------------------------------------CCCCCCEE
T ss_pred CCcCCCCccccCCCceec-CCccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee--cChhhhccCCCCcEE
Confidence 4633 4445678777765 4789999999998865 343333333333332 2233332 455667778888888
Q ss_pred EcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcc
Q 038036 91 DLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAG 170 (638)
Q Consensus 91 ~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~ 170 (638)
+|++|.+. .++..++ .+++|++|+|++|.++ .+|..+. .+++|++|+|++|.++ .+|..|..+++|++|+|+
T Consensus 230 ~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~----~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~ 301 (727)
T 4b8c_D 230 DLSNLQIF-NISANIF-KYDFLTRLYLNGNSLT-ELPAEIK----NLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFF 301 (727)
T ss_dssp ECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCS-CCCGGGG----GGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECC
T ss_pred ECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCc-ccChhhh----CCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECC
Confidence 88888887 6666655 5888888888888887 5554433 6788888888888888 678888888888888888
Q ss_pred cccccccCCccccCCCCCCEEEccCCCCccccCccccCCC-CCCEEEeecCcCcccCCcccCCCCCCCEEEccCC
Q 038036 171 FNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLT-SLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTN 244 (638)
Q Consensus 171 ~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n 244 (638)
+|.+. .+|..|..+++|++|+|++|.+.+.+|..+..+. .+..+++++|.+++.+|. .|+.|+++.|
T Consensus 302 ~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n 369 (727)
T 4b8c_D 302 DNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTD 369 (727)
T ss_dssp SSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------
T ss_pred CCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecc
Confidence 88887 6777788888888888888888877776665432 123467778877766654 3444555554
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=2.6e-15 Score=134.99 Aligned_cols=139 Identities=24% Similarity=0.224 Sum_probs=118.4
Q ss_pred CCCCccEEEeeCCccc-ccchHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhhccchh
Q 038036 385 AFQNLLVLGIGDCEIK-GQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALAL 463 (638)
Q Consensus 385 ~~~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 463 (638)
.+++++.|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+..++.|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~- 98 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT- 98 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC-
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC-
Confidence 4578999999999987 66777788899999999999999865 6788999999999999999877888888888887
Q ss_pred hhccccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccC-chhhhcCcCCCeeeCCCCeeeecCC---
Q 038036 464 QEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSI-PIEIGNLKFLHVLDLSLNNFSGEIP--- 539 (638)
Q Consensus 464 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~p--- 539 (638)
.|++++|.+++.. +..+..+++|++|++++|.+++..+
T Consensus 99 --------------------------------------~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~ 140 (168)
T 2ell_A 99 --------------------------------------HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRE 140 (168)
T ss_dssp --------------------------------------EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHH
T ss_pred --------------------------------------EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHH
Confidence 6899999998542 2688999999999999999985544
Q ss_pred hhhhCCCCCCeeeCCCCcceecCCcc
Q 038036 540 DQISQLTNLEGLDLSENNLHGEIPLS 565 (638)
Q Consensus 540 ~~~~~l~~L~~L~Ls~n~l~~~~p~~ 565 (638)
..+..+++|+.|++++|.+. .+|.+
T Consensus 141 ~~~~~l~~L~~L~l~~n~~~-~~~~~ 165 (168)
T 2ell_A 141 SVFKLLPQLTYLDGYDREDQ-EAPDS 165 (168)
T ss_dssp HHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred HHHHhCccCcEecCCCCChh-hcccc
Confidence 48999999999999999998 55543
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=2.3e-15 Score=132.45 Aligned_cols=76 Identities=21% Similarity=0.191 Sum_probs=47.5
Q ss_pred EEccCCcccccCchhhhcCcCCCeeeCCCCeeeec-CChhhhCCCCCCeeeCCCCcceecCC---ccccccCCCCeEecc
Q 038036 503 IYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGE-IPDQISQLTNLEGLDLSENNLHGEIP---LSIIDLHFLSSFSVA 578 (638)
Q Consensus 503 L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~p---~~l~~l~~L~~L~l~ 578 (638)
|++++|.+++.+|..+..+++|++|++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 69 L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 69 LELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 44444444444555555667777777777776642 23566777777777777777765444 356677777777765
No 126
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.59 E-value=1.3e-13 Score=141.60 Aligned_cols=269 Identities=9% Similarity=0.102 Sum_probs=126.1
Q ss_pred CCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCC
Q 038036 59 LTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLS 138 (638)
Q Consensus 59 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~ 138 (638)
+..++.+.+.. .++ .++..+|.+. +|+.+.+..+ ++ .+....|..+ +|+.+.+.+ .+....... |.+|+
T Consensus 112 ~~~l~~i~ip~-~i~-~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~-~l~~I~~~a----F~~c~ 180 (401)
T 4fdw_A 112 LKGYNEIILPN-SVK-SIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS-TLEQLKEDI----FYYCY 180 (401)
T ss_dssp CSSCSEEECCT-TCC-EECTTTTTTC-CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT-TCCEECSST----TTTCT
T ss_pred cCCccEEEECC-ccC-EehHhhcccC-CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC-CccEehHHH----hhCcc
Confidence 45666666654 344 5666666653 5666666554 44 3333334433 466666654 233222222 22556
Q ss_pred CcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEee
Q 038036 139 SLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQ 218 (638)
Q Consensus 139 ~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~ 218 (638)
+|+.+++.+|.++.....+|. +..|+.+.+..+ +......+|..+++|+.+++..+ +..+...+|.+ .+|+.+.+.
T Consensus 181 ~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp 256 (401)
T 4fdw_A 181 NLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP 256 (401)
T ss_dssp TCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE
T ss_pred cCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC
Confidence 666666665555533333333 455555555533 33333444555555555555543 33233344444 445555552
Q ss_pred cCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCccccc
Q 038036 219 SNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGS 298 (638)
Q Consensus 219 ~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~ 298 (638)
+.++.+....|..+++|+.+++.++.+.. +.. ..++...|.++++|+.+++.. .+...
T Consensus 257 -~~i~~I~~~aF~~c~~L~~l~l~~~~~~~-------------------~~~-~~I~~~aF~~c~~L~~l~l~~-~i~~I 314 (401)
T 4fdw_A 257 -NGVTNIASRAFYYCPELAEVTTYGSTFND-------------------DPE-AMIHPYCLEGCPKLARFEIPE-SIRIL 314 (401)
T ss_dssp -TTCCEECTTTTTTCTTCCEEEEESSCCCC-------------------CTT-CEECTTTTTTCTTCCEECCCT-TCCEE
T ss_pred -CCccEEChhHhhCCCCCCEEEeCCccccC-------------------Ccc-cEECHHHhhCCccCCeEEeCC-ceEEE
Confidence 23333334444455555555554443320 000 123334455555555555552 24433
Q ss_pred ccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCCcCCCCccccccccCCC-CCcEEEcCCCc
Q 038036 299 FPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCK-NLRMLLLCKKF 368 (638)
Q Consensus 299 ~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~-~L~~L~l~~~~ 368 (638)
....|.+|++|+.+.+..+ ++.....+|..+ +|+.+++.+|....+.. ..+.+++ .++.+.+..+.
T Consensus 315 ~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~--~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 315 GQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFE--KVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp CTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCC--SSCCCSCTTCCEEEECGGG
T ss_pred hhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccccc--ccccCCCCCccEEEeCHHH
Confidence 4444555555555555333 333334455555 55555555555444332 1233342 45555555443
No 127
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.58 E-value=9e-14 Score=142.70 Aligned_cols=246 Identities=13% Similarity=0.144 Sum_probs=172.0
Q ss_pred cccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCcccc
Q 038036 53 YPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSW 132 (638)
Q Consensus 53 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 132 (638)
..+|.++ +|+.+.+..+ ++ .++..+|.+ ..|+.+.+.. .++ .+....|..|++|+.+++++|.+.......+.
T Consensus 129 ~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~-~~L~~i~lp~-~l~-~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~- 201 (401)
T 4fdw_A 129 KDAFRNS-QIAKVVLNEG-LK-SIGDMAFFN-STVQEIVFPS-TLE-QLKEDIFYYCYNLKKADLSKTKITKLPASTFV- 201 (401)
T ss_dssp TTTTTTC-CCSEEECCTT-CC-EECTTTTTT-CCCCEEECCT-TCC-EECSSTTTTCTTCCEEECTTSCCSEECTTTTT-
T ss_pred HhhcccC-CccEEEeCCC-cc-EECHHhcCC-CCceEEEeCC-Ccc-EehHHHhhCcccCCeeecCCCcceEechhhEe-
Confidence 4567775 7999999876 65 788899988 4799999986 666 56666788899999999999998866555543
Q ss_pred CCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCC
Q 038036 133 NNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSL 212 (638)
Q Consensus 133 ~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L 212 (638)
+.+|+.+.+..+ +......+|.+|++|+.+++..+ +......+|.. .+|+.+.+. +.+..+....|.++++|
T Consensus 202 ----~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L 273 (401)
T 4fdw_A 202 ----YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPEL 273 (401)
T ss_dssp ----TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTC
T ss_pred ----ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCC
Confidence 689999999855 66667789999999999999875 55445556666 789999995 45665777889999999
Q ss_pred CEEEeecCcCc-----ccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccE
Q 038036 213 SMLDLQSNKFS-----GLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHT 287 (638)
Q Consensus 213 ~~L~l~~n~l~-----~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~ 287 (638)
+.+.+.++.+. .+.+..|..+++|+.+.+.. .++.....+|.+|++|+.+.+..+ +. .+...+|.++ +|+.
T Consensus 274 ~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~-~I~~~aF~~~-~L~~ 349 (401)
T 4fdw_A 274 AEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VT-QINFSAFNNT-GIKE 349 (401)
T ss_dssp CEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CC-EECTTSSSSS-CCCE
T ss_pred CEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-cc-EEcHHhCCCC-CCCE
Confidence 99999987664 34445666667777776663 354444455666666666666443 32 3444455555 5666
Q ss_pred EecCCCcccccccccCcCCC-CCCEEEcCCC
Q 038036 288 IDLGNNNFTGSFPLTLTSCK-VLTAIRLSRN 317 (638)
Q Consensus 288 L~l~~n~i~~~~~~~l~~~~-~L~~L~L~~n 317 (638)
+++.+|.........|.+++ .++.+++..+
T Consensus 350 l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 350 VKVEGTTPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp EEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred EEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence 66665554433333444442 3444444443
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=4.7e-15 Score=130.43 Aligned_cols=130 Identities=18% Similarity=0.160 Sum_probs=113.4
Q ss_pred CCCCccEEEeeCCccc-ccchHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhhccchh
Q 038036 385 AFQNLLVLGIGDCEIK-GQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALAL 463 (638)
Q Consensus 385 ~~~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 463 (638)
.+++++.|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+..+++|+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~- 91 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT- 91 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC-
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC-
Confidence 4578999999999988 67787888999999999999999866 6788999999999999999987888888888887
Q ss_pred hhccccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCccccc-CchhhhcCcCCCeeeCCCCeeeecCC---
Q 038036 464 QEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGS-IPIEIGNLKFLHVLDLSLNNFSGEIP--- 539 (638)
Q Consensus 464 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~p--- 539 (638)
.|++++|.+++. .+..+..+++|++|++++|.+++..+
T Consensus 92 --------------------------------------~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 133 (149)
T 2je0_A 92 --------------------------------------HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRE 133 (149)
T ss_dssp --------------------------------------EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHH
T ss_pred --------------------------------------EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHH
Confidence 699999999863 34789999999999999999996655
Q ss_pred hhhhCCCCCCeeeCCC
Q 038036 540 DQISQLTNLEGLDLSE 555 (638)
Q Consensus 540 ~~~~~l~~L~~L~Ls~ 555 (638)
..+..+++|+.|++++
T Consensus 134 ~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 134 NVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HHHHHCTTCCEETTBC
T ss_pred HHHHHCCCcccccCCC
Confidence 5799999999999874
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.58 E-value=1.6e-14 Score=132.70 Aligned_cols=128 Identities=23% Similarity=0.250 Sum_probs=85.4
Q ss_pred CEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhhccchhhhccccCCCCCCcccccccccchhhhhccc
Q 038036 414 QVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQY 493 (638)
Q Consensus 414 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 493 (638)
+.++++++.++ .+|..+ .++|++|++++|.+. .+|..|.+++.|+
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~------------------------------- 57 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLT------------------------------- 57 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCC-------------------------------
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCC-------------------------------
Confidence 45566666665 334332 246666666666665 4555555555554
Q ss_pred ccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCC
Q 038036 494 NKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLS 573 (638)
Q Consensus 494 ~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 573 (638)
.|++++|.+++..+..|.++++|++|+|++|.+++..|..|..+++|+.|+|++|.++...+..|..+++|+
T Consensus 58 --------~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 129 (193)
T 2wfh_A 58 --------LIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALS 129 (193)
T ss_dssp --------EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCC
T ss_pred --------EEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCcccc
Confidence 466666666655566677777777788888777766667777777888888888877755555677777788
Q ss_pred eEecccCceee
Q 038036 574 SFSVANNDLQG 584 (638)
Q Consensus 574 ~L~l~~n~l~~ 584 (638)
.|++++|++..
T Consensus 130 ~L~L~~N~~~C 140 (193)
T 2wfh_A 130 HLAIGANPLYC 140 (193)
T ss_dssp EEECCSSCEEC
T ss_pred EEEeCCCCeec
Confidence 88888777763
No 130
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.57 E-value=6.7e-17 Score=173.64 Aligned_cols=198 Identities=15% Similarity=0.216 Sum_probs=119.9
Q ss_pred CCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCC-------------CccccCccccCCCCCCEEE-eecCcCcc
Q 038036 159 GNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQ-------------LSGAISDGVGNLTSLSMLD-LQSNKFSG 224 (638)
Q Consensus 159 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-------------i~~~~~~~l~~l~~L~~L~-l~~n~l~~ 224 (638)
..+++|+.|++++|.+. .+|..++.+++|++|++++|. ..+..|..+..+++|+.|+ ++.|.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 34555556666666555 455555555566665554442 3334455555556666665 33332211
Q ss_pred cCC-----cccCC--CCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCcccc
Q 038036 225 LIP-----QDIGK--LTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTG 297 (638)
Q Consensus 225 ~~~-----~~l~~--l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~ 297 (638)
... ..+.. ...|+.|++++|.+++ +|. +..+++|+.|++++|.+. .+|. .+..+++|+.|++++|.+++
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~Ls~N~l~~ 500 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPP-ALAALRCLEVLQASDNALEN 500 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCG-GGGGCTTCCEEECCSSCCCC
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccch-hhhcCCCCCEEECCCCCCCC
Confidence 100 00000 1247777777777774 454 777777777777777776 5554 67777777777777777774
Q ss_pred cccccCcCCCCCCEEEcCCCcccccC-chhhhcCCCCCEEEccCCcCCCCccccc-cccCCCCCcEEE
Q 038036 298 SFPLTLTSCKVLTAIRLSRNKIVGQI-SPEILALESLSYLSITNNNFSNITGAIR-ILMGCKNLRMLL 363 (638)
Q Consensus 298 ~~~~~l~~~~~L~~L~L~~n~i~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~~~~~~~L~~L~ 363 (638)
+| .+..+++|+.|++++|.+++.. |..+..+++|+.|++++|.++.+++... ....+++|+.|+
T Consensus 501 -lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 501 -VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp -CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred -Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 55 6777777888888888777665 7777777788888888877776654332 223355555553
No 131
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.55 E-value=1.1e-15 Score=169.42 Aligned_cols=191 Identities=18% Similarity=0.182 Sum_probs=94.3
Q ss_pred ceecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCC-----CccccCCCCCCCcCEEEccCCcCCccCCccCC
Q 038036 85 IHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIP-----SFTSWNNKSLSSLKILDFSYNDFSGQLPPGLG 159 (638)
Q Consensus 85 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-----~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~ 159 (638)
+.++.|+|.+|.+.. .+.. .|+.++|+.|.+.+... ......+..++.|+.|+|++|.+. .+|..+.
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~------~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~ 244 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQA------LLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIF 244 (727)
T ss_dssp --------------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGG
T ss_pred CccceEEeeCCCCCc-chhh------HhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhc
Confidence 457888888888773 3332 23444555554432110 011112236677777777777776 5666666
Q ss_pred CCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEE
Q 038036 160 NCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSL 239 (638)
Q Consensus 160 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 239 (638)
.+++|++|+|++|.++ .+|..|..+++|++|+|++|.++ .+|..|..+++|++|++++|.++ .+|..|..+++|++|
T Consensus 245 ~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L 321 (727)
T 4b8c_D 245 KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFL 321 (727)
T ss_dssp GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCE
T ss_pred CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEE
Confidence 7777777777777777 67777777777777777777777 55777777777777777777776 446667777777777
Q ss_pred EccCCCCCCCcchhhcCCCC-CcEEEccCcccccccCcccccCCCCccEEecCCC
Q 038036 240 QLHTNSLSGFLPQSLMNCTN-LITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNN 293 (638)
Q Consensus 240 ~L~~n~i~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n 293 (638)
+|++|.+++..|..+..+.. +..+++++|.+.+.++ ..|+.|+++.|
T Consensus 322 ~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p-------~~l~~l~l~~n 369 (727)
T 4b8c_D 322 GVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP-------HERRFIEINTD 369 (727)
T ss_dssp ECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC-------CC---------
T ss_pred eCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc-------cccceeEeecc
Confidence 77777777666665544321 1235566666654333 24455555555
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.54 E-value=2.3e-14 Score=129.96 Aligned_cols=86 Identities=21% Similarity=0.166 Sum_probs=60.1
Q ss_pred eEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecccCc
Q 038036 502 AIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANND 581 (638)
Q Consensus 502 ~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~ 581 (638)
.|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|+
T Consensus 56 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 56 KLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 34444444443444456677778888888888876666667778888888888888875555556777888888888888
Q ss_pred eeecCC
Q 038036 582 LQGQIP 587 (638)
Q Consensus 582 l~~~~p 587 (638)
+.+..|
T Consensus 136 ~~~~~~ 141 (177)
T 2o6r_A 136 WDCSCP 141 (177)
T ss_dssp BCCCHH
T ss_pred eeccCc
Confidence 776555
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.52 E-value=1.4e-13 Score=126.38 Aligned_cols=127 Identities=23% Similarity=0.333 Sum_probs=81.0
Q ss_pred CEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecC
Q 038036 141 KILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSN 220 (638)
Q Consensus 141 ~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n 220 (638)
++++++++.++ .+|..+. ++|++|++++|.++ .+|..|..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 45666666665 4444432 46666777766666 55566666677777777777766655566666677777777777
Q ss_pred cCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccc
Q 038036 221 KFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFR 271 (638)
Q Consensus 221 ~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~ 271 (638)
.++.+.+..|..+++|++|++++|.++...+..+..+++|+.|++++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 666665556666666666666666666444445666666666666666554
No 134
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.50 E-value=9.3e-13 Score=135.80 Aligned_cols=234 Identities=12% Similarity=0.132 Sum_probs=107.4
Q ss_pred ccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCc
Q 038036 182 ISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLI 261 (638)
Q Consensus 182 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~ 261 (638)
|..+++|+.+.+..+. .......|..+.+|+.+.+..+ ++.+....|..+..|+.+.+..+... +.........|+
T Consensus 158 F~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~ 233 (394)
T 4fs7_A 158 FATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVK 233 (394)
T ss_dssp TTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCC
T ss_pred hcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCCCc
Confidence 4444444444444322 1123334444444554444333 22233334444445554444333221 112222334555
Q ss_pred EEEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCC
Q 038036 262 TLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNN 341 (638)
Q Consensus 262 ~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n 341 (638)
.+.+.... . .+....+..+..++.+.+..+... .....+..+..++.+......+. ...+..+.+|+.+.+..+
T Consensus 234 ~i~ip~~~-~-~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~ 307 (394)
T 4fs7_A 234 NIIIPDSF-T-ELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS 307 (394)
T ss_dssp EEEECTTC-C-EECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT
T ss_pred eEEECCCc-e-ecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---cccccccccccccccccc
Confidence 55544321 1 233334555555555555544332 33444555555555555443321 233445555555555432
Q ss_pred cCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchHHhhcCCCCCEEecCCC
Q 038036 342 NFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSN 421 (638)
Q Consensus 342 ~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n 421 (638)
++.++. ..+.+|.+|+.+ ++..+ +......+|.+|.+|+.+++..+
T Consensus 308 -i~~I~~--~aF~~c~~L~~i------------------------------~lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 308 -VKFIGE--EAFESCTSLVSI------------------------------DLPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp -CCEECT--TTTTTCTTCCEE------------------------------CCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred -cceech--hhhcCCCCCCEE------------------------------EeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 222221 223334444433 33221 22233455667777777777665
Q ss_pred ccccCcCccccCCCCCCEEEccCCcCccccchhhhhhccch
Q 038036 422 QITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALA 462 (638)
Q Consensus 422 ~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 462 (638)
++.....+|.++++|+.+++..+ +. .+..+|.++++|+
T Consensus 354 -l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~ 391 (394)
T 4fs7_A 354 -LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFK 391 (394)
T ss_dssp -CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEE
T ss_pred -ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCc
Confidence 55455567777777777777654 22 2344566666554
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=4.3e-14 Score=128.00 Aligned_cols=81 Identities=19% Similarity=0.128 Sum_probs=56.7
Q ss_pred eEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCCh--hhhCCCCCCeeeCCCCcceecCCcc----ccccCCCCeE
Q 038036 502 AIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPD--QISQLTNLEGLDLSENNLHGEIPLS----IIDLHFLSSF 575 (638)
Q Consensus 502 ~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~--~~~~l~~L~~L~Ls~n~l~~~~p~~----l~~l~~L~~L 575 (638)
.|++++|.+++..+..+..+++|++|++++|.++ .+|. .+..+++|+.|++++|.++ .+|.. +..+++|+.|
T Consensus 68 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~L 145 (176)
T 1a9n_A 68 TLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVL 145 (176)
T ss_dssp EEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEE
T ss_pred EEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCcccee
Confidence 4555555555443344577788888888888876 4554 6777888888888888887 45553 7788888888
Q ss_pred ecccCceee
Q 038036 576 SVANNDLQG 584 (638)
Q Consensus 576 ~l~~n~l~~ 584 (638)
|+++|....
T Consensus 146 d~~~n~~~~ 154 (176)
T 1a9n_A 146 DFQKVKLKE 154 (176)
T ss_dssp TTEECCHHH
T ss_pred CCCcCCHHH
Confidence 888887764
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.48 E-value=4.5e-13 Score=121.38 Aligned_cols=108 Identities=28% Similarity=0.272 Sum_probs=41.4
Q ss_pred CCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEcc
Q 038036 163 KLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLH 242 (638)
Q Consensus 163 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 242 (638)
+|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD 108 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence 33444444443332222223334444444444444433333333344444444444444443333333334444444444
Q ss_pred CCCCCCCcchhhcCCCCCcEEEccCccc
Q 038036 243 TNSLSGFLPQSLMNCTNLITLNLRINNF 270 (638)
Q Consensus 243 ~n~i~~~~~~~l~~l~~L~~L~L~~n~l 270 (638)
+|.+++..+..+..+++|+.|++++|.+
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 109 TNQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCcceEeCHHHhcCCcccCEEEecCCCe
Confidence 4444332222233334444444444433
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.46 E-value=2.5e-15 Score=139.10 Aligned_cols=135 Identities=25% Similarity=0.286 Sum_probs=111.4
Q ss_pred chHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhhccchhhhccccCCCCCCccccccc
Q 038036 403 IPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVP 482 (638)
Q Consensus 403 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~ 482 (638)
+|..+..+++|++|++++|.+++ +| .+..+++|++|++++|.+. .+|..+..+++|+
T Consensus 40 l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~-------------------- 96 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLE-------------------- 96 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCS--------------------
T ss_pred hhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCC--------------------
Confidence 34488999999999999999986 56 7888999999999999997 6777777777776
Q ss_pred ccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCC-hhhhCCCCCCeeeCCCCcceec
Q 038036 483 KTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIP-DQISQLTNLEGLDLSENNLHGE 561 (638)
Q Consensus 483 ~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~ 561 (638)
.|++++|++++ +| .+..+++|++|++++|.+++..+ +.+..+++|++|++++|.+++.
T Consensus 97 -------------------~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 97 -------------------ELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp -------------------EEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred -------------------EEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 68899999885 45 68889999999999999984332 4788999999999999999877
Q ss_pred CCcc----------ccccCCCCeEecccCcee
Q 038036 562 IPLS----------IIDLHFLSSFSVANNDLQ 583 (638)
Q Consensus 562 ~p~~----------l~~l~~L~~L~l~~n~l~ 583 (638)
.|.. +..+++|+.|| +|+++
T Consensus 156 ~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 156 YKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred cccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 6553 78889999887 66665
No 138
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.46 E-value=5.7e-12 Score=129.91 Aligned_cols=63 Identities=11% Similarity=0.010 Sum_probs=38.3
Q ss_pred chhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEeccc
Q 038036 515 PIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVAN 579 (638)
Q Consensus 515 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~ 579 (638)
..+|.++++|+.++|..+ ++.+...+|.++++|+.+++..+ ++..-..+|.++++|+.+++..
T Consensus 313 ~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 313 EEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred hhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 345666666666666543 44444566666667777766655 5545555666666677666643
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.44 E-value=2.5e-13 Score=122.93 Aligned_cols=132 Identities=20% Similarity=0.133 Sum_probs=102.2
Q ss_pred CCCCccEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhhccchhh
Q 038036 385 AFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQ 464 (638)
Q Consensus 385 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l 464 (638)
.+++|+.|++++|.+... +......++|+.|++++|.+++. ..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 17 ~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~-- 91 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT-- 91 (176)
T ss_dssp CTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC--
T ss_pred CcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC--
Confidence 456777777777777643 43333344888889888888854 5678888899999999988866555567777776
Q ss_pred hccccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCch--hhhcCcCCCeeeCCCCeeeecCChh-
Q 038036 465 EVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPI--EIGNLKFLHVLDLSLNNFSGEIPDQ- 541 (638)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~--~l~~l~~L~~L~Ls~n~l~~~~p~~- 541 (638)
.|++++|.++ .+|. .+..+++|++|++++|.++ .+|..
T Consensus 92 -------------------------------------~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~ 132 (176)
T 1a9n_A 92 -------------------------------------ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYR 132 (176)
T ss_dssp -------------------------------------EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHH
T ss_pred -------------------------------------EEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHH
Confidence 6888888886 4555 7889999999999999998 56664
Q ss_pred ---hhCCCCCCeeeCCCCccee
Q 038036 542 ---ISQLTNLEGLDLSENNLHG 560 (638)
Q Consensus 542 ---~~~l~~L~~L~Ls~n~l~~ 560 (638)
+..+++|+.||+++|.+..
T Consensus 133 ~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 133 LYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp HHHHHHCTTCSEETTEECCHHH
T ss_pred HHHHHHCCccceeCCCcCCHHH
Confidence 8999999999999998763
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.35 E-value=8.3e-15 Score=135.56 Aligned_cols=138 Identities=22% Similarity=0.232 Sum_probs=118.5
Q ss_pred hhcCCCCCEEecCCCccccCcCc------cccCCCCCCEEEccCCcCccccchhhhhhccchhhhccccCCCCCCccccc
Q 038036 407 LARLKKLQVLDLGSNQITGSIPG------WLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLF 480 (638)
Q Consensus 407 l~~l~~L~~L~L~~n~l~~~~~~------~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~ 480 (638)
+.....++.++++++.+.+..|. .+..+++|++|++++|.+.+ +| .+..++.|+
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~------------------ 73 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLR------------------ 73 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCC------------------
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCC------------------
Confidence 55567788888888888877665 88899999999999999986 66 788888877
Q ss_pred ccccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCccee
Q 038036 481 VPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHG 560 (638)
Q Consensus 481 ~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~ 560 (638)
.|++++|.++ .+|..+..+++|++|++++|.+++ +| .+..+++|+.|++++|+++.
T Consensus 74 ---------------------~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~ 129 (198)
T 1ds9_A 74 ---------------------ILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITN 129 (198)
T ss_dssp ---------------------EEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCC
T ss_pred ---------------------EEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCc
Confidence 6899999998 678888889999999999999985 45 68999999999999999985
Q ss_pred cCC-ccccccCCCCeEecccCceeecCCC
Q 038036 561 EIP-LSIIDLHFLSSFSVANNDLQGQIPS 588 (638)
Q Consensus 561 ~~p-~~l~~l~~L~~L~l~~n~l~~~~p~ 588 (638)
..+ ..+..+++|++|++++|++.+.+|.
T Consensus 130 ~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 130 WGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp HHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred hhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 433 4788999999999999999988776
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.32 E-value=5.6e-12 Score=113.08 Aligned_cols=69 Identities=26% Similarity=0.250 Sum_probs=35.4
Q ss_pred chhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecccCcee
Q 038036 515 PIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQ 583 (638)
Q Consensus 515 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 583 (638)
|..|.++++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++.
T Consensus 47 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 47 PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp TTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred hhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 334444555555555555555444444455555555555555555444444555555555555555554
No 142
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.31 E-value=4.3e-10 Score=115.78 Aligned_cols=322 Identities=16% Similarity=0.156 Sum_probs=148.1
Q ss_pred CCEEEccCCCCccccCccccCCCCCCEEEeecCc---CcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEE
Q 038036 188 LQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNK---FSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLN 264 (638)
Q Consensus 188 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~---l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ 264 (638)
|+.+.+..+ ++.+...+|.++.+|+.+.+..+. ++.+...+|..+.+|+.+.+..+ ++.....++..+.+|+.+.
T Consensus 66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~ 143 (394)
T 4gt6_A 66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVT 143 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEE
T ss_pred CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccc
Confidence 444444322 332333444444445544444332 23233334444555555444332 2223334455556666665
Q ss_pred ccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCCcCC
Q 038036 265 LRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFS 344 (638)
Q Consensus 265 L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~ 344 (638)
+..+. . .+....|..+.+|+.+.+..+ ++..-...|. ...|+.+.+..+... ....++..+.++...........
T Consensus 144 lp~~~-~-~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~~~ 218 (394)
T 4gt6_A 144 IPEGV-T-SVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTR-IGTNAFSECFALSTITSDSESYP 218 (394)
T ss_dssp CCTTC-C-EECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECCSSSC
T ss_pred cccee-e-eecccceecccccccccccce-eeEecccccc-ccceeEEEECCcccc-cccchhhhccccceecccccccc
Confidence 54322 1 334445555666666665543 2212222232 244566655543221 33344555555655555444433
Q ss_pred CCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchHHhhcCCCCCEEecCCCccc
Q 038036 345 NITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQIT 424 (638)
Q Consensus 345 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~ 424 (638)
.+......-........... .....+..+.+.. .+......+|..|..|+.+.+.++...
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~ 278 (394)
T 4gt6_A 219 AIDNVLYEKSANGDYALIRY-------------------PSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS 278 (394)
T ss_dssp BSSSCEEEECTTSCEEEEEC-------------------CTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE
T ss_pred cccceeeccccccccccccc-------------------ccccccceEEcCC-cceEcccceeeecccccEEecccccce
Confidence 32221110000000000000 0111222332221 122223445677777777777655433
Q ss_pred cCcCccccCCCCCCEEEccCCcCccccchhhhhhccchhhhccccCCCCCCcccccccccchhhhhcccccccCCCCeEE
Q 038036 425 GSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIY 504 (638)
Q Consensus 425 ~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ 504 (638)
....+|.+++.|+.+.+. +.+......+|.++.+|+ .++
T Consensus 279 -I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~---------------------------------------~i~ 317 (394)
T 4gt6_A 279 -IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLK---------------------------------------SID 317 (394)
T ss_dssp -ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCC---------------------------------------EEE
T ss_pred -ecCcccccccccccccCC-CcccccCceeecCCCCcC---------------------------------------EEE
Confidence 445567777777777775 334444445566666555 233
Q ss_pred ccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecccCce
Q 038036 505 LRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDL 582 (638)
Q Consensus 505 ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l 582 (638)
+..+ ++.....+|.++.+|+.+.|..+ ++.+...+|.++++|+.+++.++.... ..+.....|+.+.+..+.+
T Consensus 318 lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 318 IPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred eCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 3322 33334456777777777777654 444455667777777777777765442 3455666677776655443
No 143
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.31 E-value=2.4e-10 Score=117.73 Aligned_cols=319 Identities=12% Similarity=0.154 Sum_probs=206.8
Q ss_pred ccccCcCCC-CCCEEECCCCCCCCCCccccccccceecEEEcCCcc---ccccccHHHHhcCCCCcEEEcccCcCcccCC
Q 038036 52 IYPFIGNLT-HLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNS---FSGQFLSSFFQLAENLITLNVSHNMFSGSIP 127 (638)
Q Consensus 52 ~~~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~---i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 127 (638)
-..+|.+++ .|+.+.+.. .++ .+...+|.++.+|+.+.+..+. ++ .+....|..+.+|+.+.+..+ +....
T Consensus 55 g~~aF~~~~~~L~sI~iP~-svt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~- 129 (394)
T 4gt6_A 55 GDRVFCNYKYVLTSVQIPD-TVT-EIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEID- 129 (394)
T ss_dssp CTTTTTTCCSCCCEEEECT-TCC-EECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEEC-
T ss_pred CHhhccCCCCcCEEEEECC-Cee-EEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceeh-
Confidence 345677774 599999975 365 7888999999999999998764 55 556667778899998887654 33222
Q ss_pred CccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCcccc
Q 038036 128 SFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVG 207 (638)
Q Consensus 128 ~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~ 207 (638)
..++..+.+|+.+.+..+. .......|..+..|+.+.+..+ +.......|. ...|+.+.+..+-.. .....|.
T Consensus 130 ---~~aF~~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~-i~~~af~ 202 (394)
T 4gt6_A 130 ---SEAFHHCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTR-IGTNAFS 202 (394)
T ss_dssp ---TTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCE-ECTTTTT
T ss_pred ---hhhhhhhccccccccccee-eeecccceecccccccccccce-eeEecccccc-ccceeEEEECCcccc-cccchhh
Confidence 2334478999999997553 3355667889999999998765 3323333443 467888888765433 5556777
Q ss_pred CCCCCCEEEeecCcCcccCCcc-------------cCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCccccccc
Q 038036 208 NLTSLSMLDLQSNKFSGLIPQD-------------IGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDL 274 (638)
Q Consensus 208 ~l~~L~~L~l~~n~l~~~~~~~-------------l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 274 (638)
.+..++................ +.....+..+.+.. .++.....+|.++..|+.+.+..+.. .+
T Consensus 203 ~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~--~I 279 (394)
T 4gt6_A 203 ECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVV--SI 279 (394)
T ss_dssp TCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCC--EE
T ss_pred hccccceecccccccccccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccc--ee
Confidence 8888888776554433211100 11122333343322 22223345788889999998876543 35
Q ss_pred CcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCCcCCCCcccccccc
Q 038036 275 SAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILM 354 (638)
Q Consensus 275 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~ 354 (638)
....|..+++|+.+.+.. .++......|.+|.+|+.+.+..+ ++.....+|..+.+|+.+.+..+ ++.+.. ..+.
T Consensus 280 ~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~--~aF~ 354 (394)
T 4gt6_A 280 GTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPE--SAFS 354 (394)
T ss_dssp CTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCG--GGGT
T ss_pred cCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhH--hHhh
Confidence 566788889999999864 455455667888999999999765 55456678888999999998654 555543 5688
Q ss_pred CCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcc
Q 038036 355 GCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEI 399 (638)
Q Consensus 355 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 399 (638)
+|.+|+.+++.++..... ....+..|+.+.+..+.+
T Consensus 355 ~C~~L~~i~~~~~~~~~~---------~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 355 NCTALNNIEYSGSRSQWN---------AISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TCTTCCEEEESSCHHHHH---------TCBCCCCC----------
T ss_pred CCCCCCEEEECCceeehh---------hhhccCCCCEEEeCCCCE
Confidence 899999999887643211 113456788877765543
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.29 E-value=9.8e-12 Score=111.85 Aligned_cols=57 Identities=23% Similarity=0.257 Sum_probs=26.8
Q ss_pred EEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcce
Q 038036 503 IYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLH 559 (638)
Q Consensus 503 L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~ 559 (638)
|++++|+|++..+..|.++++|++|+|++|.+++..+..|..+++|+.|+|++|++.
T Consensus 62 L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 62 LYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred EECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 334444443333333444555555555555555333333555555555555555554
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.27 E-value=3.1e-11 Score=108.23 Aligned_cols=104 Identities=22% Similarity=0.277 Sum_probs=50.0
Q ss_pred CEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecC
Q 038036 141 KILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSN 220 (638)
Q Consensus 141 ~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n 220 (638)
+.++++++.++ .+|..+. ++|++|++++|.+++..|..|..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 44555555554 2333331 44555555555555444444455555555555555555444444444555555555555
Q ss_pred cCcccCCcccCCCCCCCEEEccCCCCC
Q 038036 221 KFSGLIPQDIGKLTNLKSLQLHTNSLS 247 (638)
Q Consensus 221 ~l~~~~~~~l~~l~~L~~L~L~~n~i~ 247 (638)
++++..+..|..+++|++|++++|.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 554443334444455555555555444
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.26 E-value=8.9e-14 Score=141.34 Aligned_cols=188 Identities=16% Similarity=0.155 Sum_probs=118.6
Q ss_pred CCCCCEEECCCCCCCCCCccccccc-----cceecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccC
Q 038036 59 LTHLCHLNLSHNHLSGPLAINSFSF-----VIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWN 133 (638)
Q Consensus 59 l~~L~~L~Ls~n~l~~~~~~~~~~~-----~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~ 133 (638)
.++|++|+|++|.+++ .....+.. ...|++|+|++|.+++.....+...+++|++|+|++|.+++.....+...
T Consensus 71 ~~~L~~L~Ls~n~l~~-~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTP-VKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCCCH-HHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCH-HHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 3678888888888763 22222222 25688888888888765555566666778888888888765433322211
Q ss_pred C-CCCCCcCEEEccCCcCCc----cCCccCCCCCCCcEEEccccccccc----CCccccCCCCCCEEEccCCCCccc---
Q 038036 134 N-KSLSSLKILDFSYNDFSG----QLPPGLGNCSKLQTFRAGFNYLSGS----IPDDISAATSLQEISLPGNQLSGA--- 201 (638)
Q Consensus 134 ~-~~l~~L~~L~ls~n~i~~----~~~~~l~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~i~~~--- 201 (638)
+ ...++|++|++++|.++. .++..+..+++|++|++++|.+.+. ++..+...++|++|++++|.++..
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 1 246778888888888764 2334446778888888888887643 244566677899999999888743
Q ss_pred -cCccccCCCCCCEEEeecCcCcccCCcccCCC---C--CCCEEE--ccCCCCC
Q 038036 202 -ISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKL---T--NLKSLQ--LHTNSLS 247 (638)
Q Consensus 202 -~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l---~--~L~~L~--L~~n~i~ 247 (638)
++..+...++|++|++++|.++......+..+ . .++.+. +..+.+.
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 23344566889999999998875433333322 1 155665 5555444
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.25 E-value=3.4e-13 Score=137.00 Aligned_cols=170 Identities=16% Similarity=0.138 Sum_probs=123.7
Q ss_pred cceecEEEcCCccccccccHHHHh----cCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccC-
Q 038036 84 VIHLETLDLSYNSFSGQFLSSFFQ----LAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGL- 158 (638)
Q Consensus 84 ~~~L~~L~Ls~n~i~~~~~~~~~~----~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l- 158 (638)
...|++|+|++|.+++.....+.. ..++|++|+|++|.+++.....+. ..+++|++|++++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~---~~L~~L~~L~Ls~n~l~~~~~~~L~ 147 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLL---PVFLRARKLGLQLNSLGPEACKDLR 147 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTH---HHHHTEEEEECCSSCCCHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHH---HHHHhccHhhcCCCCCCHHHHHHHH
Confidence 456999999999998544443332 236899999999998754332211 135689999999999875433333
Q ss_pred ----CCCCCCcEEEccccccccc----CCccccCCCCCCEEEccCCCCccc----cCccccCCCCCCEEEeecCcCccc-
Q 038036 159 ----GNCSKLQTFRAGFNYLSGS----IPDDISAATSLQEISLPGNQLSGA----ISDGVGNLTSLSMLDLQSNKFSGL- 225 (638)
Q Consensus 159 ----~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~l~~n~l~~~- 225 (638)
...+.|++|++++|.++.. ++..+..+++|++|+|++|.+... ++..+...++|++|++++|.++..
T Consensus 148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g 227 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA 227 (372)
T ss_dssp HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH
T ss_pred HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH
Confidence 3568899999999998742 344457789999999999998743 245667788999999999998753
Q ss_pred ---CCcccCCCCCCCEEEccCCCCCCCcchhhcC
Q 038036 226 ---IPQDIGKLTNLKSLQLHTNSLSGFLPQSLMN 256 (638)
Q Consensus 226 ---~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~ 256 (638)
++..+...++|++|+|++|.+++.....+..
T Consensus 228 ~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~ 261 (372)
T 3un9_A 228 ALALARAAREHPSLELLHLYFNELSSEGRQVLRD 261 (372)
T ss_dssp HHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence 2334456689999999999998655555543
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.24 E-value=5e-11 Score=107.19 Aligned_cols=104 Identities=19% Similarity=0.301 Sum_probs=48.9
Q ss_pred CEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecC
Q 038036 141 KILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSN 220 (638)
Q Consensus 141 ~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n 220 (638)
+.++++++.++ .+|..+. ++|++|++++|.+.+..|..|..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 34555555554 3343332 44555555555554444444445555555555555554433333444455555555555
Q ss_pred cCcccCCcccCCCCCCCEEEccCCCCC
Q 038036 221 KFSGLIPQDIGKLTNLKSLQLHTNSLS 247 (638)
Q Consensus 221 ~l~~~~~~~l~~l~~L~~L~L~~n~i~ 247 (638)
++++..+..|..+++|++|++++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 444433333444444444444444444
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.13 E-value=9.5e-11 Score=118.58 Aligned_cols=106 Identities=18% Similarity=0.162 Sum_probs=85.5
Q ss_pred eEEccCC-cccccCchhhhcCcCCCeeeCCC-CeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEeccc
Q 038036 502 AIYLRNN-SLNGSIPIEIGNLKFLHVLDLSL-NNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVAN 579 (638)
Q Consensus 502 ~L~ls~n-~l~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~ 579 (638)
.++++++ .++ .+|. +..+++|++|+|++ |.+++..+..|..+++|+.|+|++|+|++..|..|..+++|+.|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4778887 787 5777 88888899999986 888877778888899999999999999888888888899999999999
Q ss_pred CceeecCCCCCcCCCcCCCccCCCCCCCCC
Q 038036 580 NDLQGQIPSGGQFLTFPSSSFEGNPRFCGD 609 (638)
Q Consensus 580 n~l~~~~p~~~~~~~l~~~~~~~n~~lc~~ 609 (638)
|+|++..|.......+..+.+.+|++.|..
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c 119 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNPLHCSC 119 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSCCCCCG
T ss_pred CccceeCHHHcccCCceEEEeeCCCccCCC
Confidence 998855544444344778888888888864
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.05 E-value=3.1e-10 Score=114.82 Aligned_cols=106 Identities=22% Similarity=0.197 Sum_probs=85.8
Q ss_pred CEEecCCC-ccccCcCccccCCCCCCEEEccC-CcCccccchhhhhhccchhhhccccCCCCCCcccccccccchhhhhc
Q 038036 414 QVLDLGSN-QITGSIPGWLGNMPNLFYIDLSY-NSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQ 491 (638)
Q Consensus 414 ~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 491 (638)
..++++++ .++ .+|. +..+++|++|+|++ |.+.+..+..|.++++|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~----------------------------- 59 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELR----------------------------- 59 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCS-----------------------------
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCC-----------------------------
Confidence 35688887 887 4676 88899999999996 999877778888888776
Q ss_pred ccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceec
Q 038036 492 QYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGE 561 (638)
Q Consensus 492 ~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ 561 (638)
.|+|++|+|++..|..|.++++|++|+|++|++++..+..|..++ |+.|+|.+|.+...
T Consensus 60 ----------~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 60 ----------NLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp ----------EEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred ----------EEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 688888888888888888888899999999988865555666555 88888888888743
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.04 E-value=4.3e-08 Score=100.25 Aligned_cols=284 Identities=15% Similarity=0.147 Sum_probs=144.2
Q ss_pred CCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEE
Q 038036 36 ARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITL 115 (638)
Q Consensus 36 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L 115 (638)
.+++.+.+.. +++..-..+|.+|.+|+.++|..+ ++ .++..+|.++ +|+.+.+..+ ++ .+....|..+ +|+.+
T Consensus 46 ~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~-~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~~-~L~~i 118 (379)
T 4h09_A 46 DRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VT-SIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQGT-DLDDF 118 (379)
T ss_dssp GGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CC-EECTTTTTTC-CCCEEEECTT-CC-EECTTTTTTC-CCSEE
T ss_pred cCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ce-EechhhhcCC-CCceEECCce-ee-EeccceeccC-Ccccc
Confidence 3556666643 344444566777778888777543 54 5777777665 5666666543 33 3333444433 67777
Q ss_pred EcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEccccccccc------------CCcccc
Q 038036 116 NVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGS------------IPDDIS 183 (638)
Q Consensus 116 ~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~------------~~~~~~ 183 (638)
.+..+ +.......+ .. .+++.+.+..+ ++......+..+..++...+........ ....+.
T Consensus 119 ~lp~~-~~~i~~~~F----~~-~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (379)
T 4h09_A 119 EFPGA-TTEIGNYIF----YN-SSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYP 191 (379)
T ss_dssp ECCTT-CCEECTTTT----TT-CCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECC
T ss_pred cCCCc-ccccccccc----cc-ceeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccc
Confidence 77654 221222222 12 34555555433 3323445566677777766654332210 111222
Q ss_pred CCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEE
Q 038036 184 AATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITL 263 (638)
Q Consensus 184 ~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L 263 (638)
....+..+.+...... .....+..+..|+.+.+..+ +..+....+..+..|+.+.+..+ ++.....++.++..|+.+
T Consensus 192 ~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i 268 (379)
T 4h09_A 192 AAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTL 268 (379)
T ss_dssp TTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEE
T ss_pred ccccccccccccceeE-Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccc
Confidence 3334444444332211 23334455555666655433 23233345555566666666543 332334455566666666
Q ss_pred EccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEcc
Q 038036 264 NLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSIT 339 (638)
Q Consensus 264 ~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~ 339 (638)
.+..+ +. .+....|..+.+|+.+.+.++.++......|.+|.+|+.+.+..+ ++.....+|.++.+|+.+.+.
T Consensus 269 ~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 269 NFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp EECCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred ccccc-ce-eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 65433 22 344445666666666666655555444555666666666666533 333344555556666665554
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.92 E-value=3.5e-07 Score=93.43 Aligned_cols=82 Identities=9% Similarity=0.077 Sum_probs=43.1
Q ss_pred cccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCC
Q 038036 181 DISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNL 260 (638)
Q Consensus 181 ~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L 260 (638)
++....+|+.+.+.. .++.+...+|.++.+|+.+.+..+ ++.+...+|... +|+.+.+..+ ++.....+|.. .+|
T Consensus 41 ~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L 115 (379)
T 4h09_A 41 WYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDL 115 (379)
T ss_dssp TGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCC
T ss_pred ccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCc
Confidence 344556677777754 344455566777777777777543 444444555554 4555555432 22222233333 245
Q ss_pred cEEEccC
Q 038036 261 ITLNLRI 267 (638)
Q Consensus 261 ~~L~L~~ 267 (638)
+.+.+..
T Consensus 116 ~~i~lp~ 122 (379)
T 4h09_A 116 DDFEFPG 122 (379)
T ss_dssp SEEECCT
T ss_pred ccccCCC
Confidence 5555543
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.80 E-value=1.6e-08 Score=101.57 Aligned_cols=64 Identities=17% Similarity=0.118 Sum_probs=38.6
Q ss_pred CCCccEEEeeCCcccccchHHhh--cCCCCCEEecCCC--ccccC-----cCccc--cCCCCCCEEEccCCcCcc
Q 038036 386 FQNLLVLGIGDCEIKGQIPTWLA--RLKKLQVLDLGSN--QITGS-----IPGWL--GNMPNLFYIDLSYNSISG 449 (638)
Q Consensus 386 ~~~L~~L~l~~~~~~~~~~~~l~--~l~~L~~L~L~~n--~l~~~-----~~~~l--~~l~~L~~L~L~~n~i~~ 449 (638)
.++|+.|++..|.+.......+. .+|+|+.|+|+.+ ...+. +...+ ..+|+|+.|+|++|.+..
T Consensus 192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~ 266 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQN 266 (362)
T ss_dssp CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHH
T ss_pred CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCch
Confidence 46777788777776654444443 6788888887532 11111 11122 247888888888887763
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.70 E-value=1.5e-08 Score=101.87 Aligned_cols=43 Identities=19% Similarity=0.211 Sum_probs=22.4
Q ss_pred chHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCc
Q 038036 403 IPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSIS 448 (638)
Q Consensus 403 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~ 448 (638)
+...+..+|+|+.|++++|.-. .++. +. +++|+.|+|..|.+.
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~ 206 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLP 206 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCC
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCC
Confidence 3445555666666666655211 1122 22 566666666666554
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.57 E-value=3.6e-08 Score=89.30 Aligned_cols=47 Identities=9% Similarity=-0.021 Sum_probs=32.2
Q ss_pred chHHhhcCCCCCEEecCCC-ccccC----cCccccCCCCCCEEEccCCcCcc
Q 038036 403 IPTWLARLKKLQVLDLGSN-QITGS----IPGWLGNMPNLFYIDLSYNSISG 449 (638)
Q Consensus 403 ~~~~l~~l~~L~~L~L~~n-~l~~~----~~~~l~~l~~L~~L~L~~n~i~~ 449 (638)
+...+...+.|++|+|++| .+... +...+...++|++|+|++|.+..
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~ 79 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSND 79 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCCh
Confidence 3455666778888888887 77532 33445667788888888887763
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.49 E-value=8e-09 Score=93.67 Aligned_cols=102 Identities=17% Similarity=0.131 Sum_probs=57.8
Q ss_pred eeccccCcCCCCCCEEECCCC-CCCCCCc---cccccccceecEEEcCCccccccccHH---HHhcCCCCcEEEcccCcC
Q 038036 50 GSIYPFIGNLTHLCHLNLSHN-HLSGPLA---INSFSFVIHLETLDLSYNSFSGQFLSS---FFQLAENLITLNVSHNMF 122 (638)
Q Consensus 50 ~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~---~~~~~~~~~L~~L~Ls~n~i~~~~~~~---~~~~~~~L~~L~Ls~n~l 122 (638)
..+...+...+.|++|+|++| .+.+.-. ...+...+.|++|+|++|.|++..... .+...++|++|+|++|.+
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI 105 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence 344556677788888888888 7753111 122334556778888888776543322 233445677777777766
Q ss_pred cccCCCccccCCCCCCCcCEEEc--cCCcCC
Q 038036 123 SGSIPSFTSWNNKSLSSLKILDF--SYNDFS 151 (638)
Q Consensus 123 ~~~~~~~~~~~~~~l~~L~~L~l--s~n~i~ 151 (638)
.+.....+...+...+.|++|++ ++|.+.
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 64433323333334555666666 555554
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.47 E-value=2.8e-09 Score=101.46 Aligned_cols=146 Identities=17% Similarity=0.147 Sum_probs=74.8
Q ss_pred CCcCccceEECCC-CCeEEEECCC---CCceeecc-ccCcCCCCCCEEECCCCCCCCCCccccccccceecE--EEcCCc
Q 038036 23 DCCFWEGIKCDSK-ARVTHLWLPY---RGLSGSIY-PFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLET--LDLSYN 95 (638)
Q Consensus 23 ~~~~w~g~~c~~~-~~v~~L~l~~---~~~~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~--L~Ls~n 95 (638)
..|+|.|+.|+.. .+|..+...+ ..+.+.+. ..+..++. .+..+++.-.+.+....|...+.|+. ++++.|
T Consensus 76 ~l~~~~g~i~~~~~~ki~~~v~~~~~~~~~~~~l~~~~~~~Lk~--~l~~ryn~~~~~LdLs~l~~dp~L~~~~l~l~~N 153 (267)
T 3rw6_A 76 ALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKL--IMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLN 153 (267)
T ss_dssp HHHHTTSSCBCTTSCBCCCEEEECCCCHHHHTSCCHHHHHHHHH--HHHHTEETTTTEEECTTGGGCHHHHHTTCCCCTT
T ss_pred HHHhcCcEEECCCCCEEEEEEecCCCcccccccCCHHHHHHHHH--HHHhccchhccccCHHHcCCCcchhhcCccccCC
Confidence 3578999999853 3555443332 12222222 11222211 23333343333334334555566665 667777
Q ss_pred ccccccc---HHHHhcCCCCcEEEcccCcCccc--CCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCC--CCcEEE
Q 038036 96 SFSGQFL---SSFFQLAENLITLNVSHNMFSGS--IPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCS--KLQTFR 168 (638)
Q Consensus 96 ~i~~~~~---~~~~~~~~~L~~L~Ls~n~l~~~--~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~--~L~~L~ 168 (638)
+.. .++ ......+++|++|+|++|++++. ++..+. .+++|+.|+|++|.+++. ..+..+. +|++|+
T Consensus 154 ~~~-~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~----~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~ 226 (267)
T 3rw6_A 154 RRS-CMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQ----KAPNLKILNLSGNELKSE--RELDKIKGLKLEELW 226 (267)
T ss_dssp SHH-HHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHH----HSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEE
T ss_pred HHH-HHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHh----hCCCCCEEECCCCccCCc--hhhhhcccCCcceEE
Confidence 543 222 22234577888888888887752 233332 567777777777777643 2222222 555556
Q ss_pred ccccccccc
Q 038036 169 AGFNYLSGS 177 (638)
Q Consensus 169 l~~n~~~~~ 177 (638)
+++|.+.+.
T Consensus 227 L~~Npl~~~ 235 (267)
T 3rw6_A 227 LDGNSLCDT 235 (267)
T ss_dssp CTTSTTGGG
T ss_pred ccCCcCccc
Confidence 555555543
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.19 E-value=7.2e-07 Score=84.83 Aligned_cols=84 Identities=24% Similarity=0.257 Sum_probs=63.5
Q ss_pred EEccCCccc---ccCchhhhcCcCCCeeeCCCCeeee--cCChhhhCCCCCCeeeCCCCcceecCCccccccC--CCCeE
Q 038036 503 IYLRNNSLN---GSIPIEIGNLKFLHVLDLSLNNFSG--EIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLH--FLSSF 575 (638)
Q Consensus 503 L~ls~n~l~---~~~~~~l~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~--~L~~L 575 (638)
++++.|... ..++....++++|++|+|++|.+++ .+|+.+..+++|+.|+|++|.|++. ..+..+. .|++|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence 445556432 2223334678999999999999987 4567788999999999999999865 3445555 89999
Q ss_pred ecccCceeecCCC
Q 038036 576 SVANNDLQGQIPS 588 (638)
Q Consensus 576 ~l~~n~l~~~~p~ 588 (638)
+|++|++.+.+|.
T Consensus 226 ~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 226 WLDGNSLCDTFRD 238 (267)
T ss_dssp ECTTSTTGGGCSS
T ss_pred EccCCcCccccCc
Confidence 9999999987774
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.99 E-value=2.7e-06 Score=74.83 Aligned_cols=34 Identities=15% Similarity=0.041 Sum_probs=15.0
Q ss_pred CCCEEEccCCC-CCCCcchhhcCCCCCcEEEccCc
Q 038036 235 NLKSLQLHTNS-LSGFLPQSLMNCTNLITLNLRIN 268 (638)
Q Consensus 235 ~L~~L~L~~n~-i~~~~~~~l~~l~~L~~L~L~~n 268 (638)
+|++|++++|. +++..-..+.++++|+.|++++|
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDL 149 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESC
T ss_pred CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCC
Confidence 34444444442 44333333444444555554444
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.88 E-value=5.4e-06 Score=72.88 Aligned_cols=83 Identities=17% Similarity=0.136 Sum_probs=39.7
Q ss_pred CCcEEEcccccccccCCccccCCCCCCEEEccCCC-CccccCccccCC----CCCCEEEeecCc-CcccCCcccCCCCCC
Q 038036 163 KLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQ-LSGAISDGVGNL----TSLSMLDLQSNK-FSGLIPQDIGKLTNL 236 (638)
Q Consensus 163 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~l~~l----~~L~~L~l~~n~-l~~~~~~~l~~l~~L 236 (638)
.|+.|+++++.++..--..+..+++|++|+|++|. ++...-..+..+ ++|++|++++|. ++...-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 44445555444443333334455555555555553 433222233332 245666666553 443322344555666
Q ss_pred CEEEccCCC
Q 038036 237 KSLQLHTNS 245 (638)
Q Consensus 237 ~~L~L~~n~ 245 (638)
++|++++|.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 666666653
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.32 E-value=4e-05 Score=68.71 Aligned_cols=92 Identities=16% Similarity=0.151 Sum_probs=41.3
Q ss_pred cCcCCCCCCEEECCCC-CCCCCC---ccccccccceecEEEcCCcccccccc---HHHHhcCCCCcEEEcccCcCcccCC
Q 038036 55 FIGNLTHLCHLNLSHN-HLSGPL---AINSFSFVIHLETLDLSYNSFSGQFL---SSFFQLAENLITLNVSHNMFSGSIP 127 (638)
Q Consensus 55 ~l~~l~~L~~L~Ls~n-~l~~~~---~~~~~~~~~~L~~L~Ls~n~i~~~~~---~~~~~~~~~L~~L~Ls~n~l~~~~~ 127 (638)
.+.+-+.|++|+|++| .|.+.- -..++.....|+.|+|++|.|++... ...+..-+.|++|+|++|.+.+...
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 3445567777777764 554211 01122233346666666666653221 1222333445555555555544333
Q ss_pred CccccCCCCCCCcCEEEcc
Q 038036 128 SFTSWNNKSLSSLKILDFS 146 (638)
Q Consensus 128 ~~~~~~~~~l~~L~~L~ls 146 (638)
..+..+++....|++|+|+
T Consensus 116 ~ala~aL~~N~tL~~L~L~ 134 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKAD 134 (197)
T ss_dssp HHHHHHTTTTCCCSEEECC
T ss_pred HHHHHHHhhCCceeEEECC
Confidence 3233333333444444444
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.24 E-value=4.6e-05 Score=68.30 Aligned_cols=116 Identities=14% Similarity=0.097 Sum_probs=74.5
Q ss_pred ccceecEEEcCCc-cccccccHHH---HhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCcc----C
Q 038036 83 FVIHLETLDLSYN-SFSGQFLSSF---FQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQ----L 154 (638)
Q Consensus 83 ~~~~L~~L~Ls~n-~i~~~~~~~~---~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~----~ 154 (638)
.-+.|+.|+|++| .|.+.....+ ...-..|+.|+|++|.+.+.....++.+++..+.|++|+|+.|.|... +
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3455888888875 7765433322 234456888888888887665555555555677888888888887632 3
Q ss_pred CccCCCCCCCcEEEccccc---ccc----cCCccccCCCCCCEEEccCCCC
Q 038036 155 PPGLGNCSKLQTFRAGFNY---LSG----SIPDDISAATSLQEISLPGNQL 198 (638)
Q Consensus 155 ~~~l~~l~~L~~L~l~~n~---~~~----~~~~~~~~l~~L~~L~L~~n~i 198 (638)
.+.+..-+.|++|+++++. +.. .+...+..-+.|++|+++.+.+
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 4456666678888887542 232 1333455567788888876654
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.51 E-value=0.0031 Score=52.62 Aligned_cols=56 Identities=21% Similarity=0.213 Sum_probs=39.1
Q ss_pred eEEccCCccc-ccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcce
Q 038036 502 AIYLRNNSLN-GSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLH 559 (638)
Q Consensus 502 ~L~ls~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~ 559 (638)
.++.+++.++ ..+|..+. ++|++|+|++|.|+...+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5777777775 34553322 35788888888887655666777888888888888775
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.37 E-value=0.004 Score=51.93 Aligned_cols=57 Identities=19% Similarity=0.250 Sum_probs=46.5
Q ss_pred CeeeCCCCeee-ecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecccCcee
Q 038036 525 HVLDLSLNNFS-GEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQ 583 (638)
Q Consensus 525 ~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 583 (638)
..++.+++.++ ..+|..+. ++|+.|+|++|+|+...+..|..+++|+.|+|++|++.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47889999886 35665432 47999999999999776778899999999999999875
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=39.13 E-value=42 Score=25.71 Aligned_cols=47 Identities=17% Similarity=0.048 Sum_probs=31.1
Q ss_pred cccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCC
Q 038036 509 SLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSEN 556 (638)
Q Consensus 509 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n 556 (638)
.++..-..+|.++.+|+.+.|-.+- +.+....|.++.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEcCC
Confidence 3444445567778888888877653 3355567777777777777654
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=35.86 E-value=1e+02 Score=23.49 Aligned_cols=35 Identities=23% Similarity=0.240 Sum_probs=13.7
Q ss_pred ccCCCCCCEEEccCCCCccccCccccCCCCCCEEEe
Q 038036 182 ISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDL 217 (638)
Q Consensus 182 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l 217 (638)
|.++.+|+.+.+..+ ++.+....|.++.+|+.+.+
T Consensus 16 F~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~ 50 (100)
T 2lz0_A 16 FAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLIL 50 (100)
T ss_dssp TTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEE
T ss_pred hcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEE
Confidence 334444444444332 22222334444444444444
Done!