BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038037
(798 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 157 bits (398), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 200/650 (30%), Positives = 278/650 (42%), Gaps = 114/650 (17%)
Query: 223 SLKELDLSANILSSELPT--SIGNLSSLKKLDLSQNRFFSELPTSIGN---LGSLKVLDL 277
SL LDLS N LS + T S+G+ S LK L++S N + P + L SL+VLDL
Sbjct: 98 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKVSGGLKLNSLEVLDL 155
Query: 278 SRNG-----------------LFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKV 320
S N L L +S NK SG+ S +L+ LD+ S +F +
Sbjct: 156 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGI 213
Query: 321 PHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALH------VGQIPSSLRNLTQLIV 374
P +G+ + LQ L ++ N SGD +I LK L+ VG IP L L
Sbjct: 214 PF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQY 270
Query: 375 LSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLT 434
LSL++N + G I DFL + L L LS N + S +
Sbjct: 271 LSLAENKFTGEIP-DFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG 329
Query: 435 EFP-NFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLP 493
E P + L L +LDLS N G++P+ L NLS +LLT
Sbjct: 330 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLT----------NLSASLLT---------- 369
Query: 494 GKTFDFSSNNLQGPLPVP-----PPETI--LYLVSNNSLTGEIPSWICNLNTLKNLVLSH 546
D SSNN GP+ +P P T+ LYL NN TG+IP + N + L +L LS
Sbjct: 370 ---LDLSSNNFSGPI-LPNLCQNPKNTLQELYL-QNNGFTGKIPPTLSNCSELVSLHLSF 424
Query: 547 NSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSL 606
N LSG +P LG+ S +L L L N G IP + L + L N G IP L
Sbjct: 425 NYLSGTIPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 483
Query: 607 VNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIID 666
NC+ L ++ L NN+++ P W+G L NL +L L +N+F G I DC L +D
Sbjct: 484 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC--RSLIWLD 541
Query: 667 LSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQ--------------DVIPPYGQVSTDL 712
L+ N F G +P+ F + RY+ +++ G S L
Sbjct: 542 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL 601
Query: 713 ----------ISTYDY----SLTMNSKGRMMTYNKIPDILTGII--------------LS 744
I++ Y S T ++ G MM + ++L+G I L
Sbjct: 602 NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLG 661
Query: 745 SNRFDGVIPTSIANLKGXXXXXXXXXXXXGHIPSCLGNLTNLESLDLSNN 794
N G IP + +L+G G IP + LT L +DLSNN
Sbjct: 662 HNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 711
Score = 135 bits (341), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 194/693 (27%), Positives = 298/693 (43%), Gaps = 86/693 (12%)
Query: 40 KNTGHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFN-----SSEIPPEIINLL 94
K + + LDLS + L G + + +SL L++LN++ N + S + + +L
Sbjct: 94 KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 153
Query: 95 RLSYLNLSGASLSGQIPSEILEFXXXXXXXXXXXXGPGGRLELQKPNLANLVE--KLSNL 152
LS ++SGA++ G + S+ G L + ++ V+ + NL
Sbjct: 154 DLSANSISGANVVGWVLSD--------------GCGELKHLAISGNKISGDVDVSRCVNL 199
Query: 153 ETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGXXXXXXXXXXXXXXXRG 212
E LD+ + + IP L + S+L + + +L G + G
Sbjct: 200 EFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG 258
Query: 213 ELLVSIGNLHSLKELDLSANILSSELPTSI-GNLSSLKKLDLSQNRFFSELPTSIG---- 267
+ L SL+ L L+ N + E+P + G +L LDLS N F+ +P G
Sbjct: 259 P--IPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 316
Query: 268 ---------NLGSLKVLD--LSRNGLFELHLSFNKFSGEFPWSTRNFS-SLKILDLRSCS 315
N +D L GL L LSFN+FSGE P S N S SL LDL S +
Sbjct: 317 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 376
Query: 316 FWGKV-PHSIGN-FTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHV------GQIPSSLR 367
F G + P+ N LQ LYL N F+G + ++ N L +LH+ G IPSSL
Sbjct: 377 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG 436
Query: 368 NLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLS-LLTKATSNTTSQKFRYV 426
+L++L L L N G I + + +K LE L+L N L+ + SN T+ ++
Sbjct: 437 SLSKLRDLKLWLNMLEGEIPQELMY--VKTLETLILDFNDLTGEIPSGLSNCTN--LNWI 492
Query: 427 GLRSCNLT-EFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRF 485
L + LT E P ++ +L IL LS N G IP L D + L L+L+ NL
Sbjct: 493 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD--CRSLIWLDLNTNLFN-- 548
Query: 486 DQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLS 545
+P F S ++ N + G+ +I N K +
Sbjct: 549 ----GTIPAAMFKQSGK-----------------IAANFIAGKRYVYIKNDGMKKECHGA 587
Query: 546 HNSLS--GLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIP 603
N L G+ + L S ++ + G TF + +D+S+N+ G IP
Sbjct: 588 GNLLEFQGIRSEQLNRLSTRNPC-NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 646
Query: 604 RSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLH 663
+ + + L L+LG+N IS + P +G L LN+L L SN G I P+ + L
Sbjct: 647 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI--PQAMSALTMLT 704
Query: 664 IIDLSNNRFTGKLPS-KSFLCWDAMKIVNTTEL 695
IDLSNN +G +P F + K +N L
Sbjct: 705 EIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGL 737
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 142/488 (29%), Positives = 205/488 (42%), Gaps = 84/488 (17%)
Query: 330 LQLLYLTFNNFSGDL--LGSIGNLRSLKALHV--------GQIPSSLRNLTQLIVLSLSQ 379
L L L+ N+ SG + L S+G+ LK L+V G++ L+ L L VL LS
Sbjct: 99 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK-LNSLEVLDLSA 157
Query: 380 NSYRGMIELDFLLT-SLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPN 438
NS G + ++L+ L+ L +S N++S + ++ + S N +
Sbjct: 158 NSISGANVVGWVLSDGCGELKHLAISGNKIS---GDVDVSRCVNLEFLDVSSNNFSTGIP 214
Query: 439 FLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFD 498
FL + L LD+S N++ G + A++ L K +
Sbjct: 215 FLGDCSALQHLDISGNKLSGDFSR-----------AISTCTEL-------------KLLN 250
Query: 499 FSSNNLQGPLPVPPPETILYL-VSNNSLTGEIPSWICN-LNTLKNLVLSHNSLSGLLPQC 556
SSN GP+P P +++ YL ++ N TGEIP ++ +TL L LS N G +P
Sbjct: 251 ISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF 310
Query: 557 LGNFSDELAVLDLQGNNFFGTIP-DTFIKESRLGVIDLSHNLFQGRIPRSLVNCSK-LEF 614
G+ S ++ NNF G +P DT +K L V+DLS N F G +P SL N S L
Sbjct: 311 FGSCSLLESLALSS-NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 369
Query: 615 LDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTG 674
LDL +N S LPNL + P+ + L + L NN FTG
Sbjct: 370 LDLSSNNFSGPI------LPNL-------------CQNPK-----NTLQELYLQNNGFTG 405
Query: 675 KLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKI 734
K+P C + + + YL IP L D L +N M +I
Sbjct: 406 KIPPTLSNCSELVSL--HLSFNYLSGTIP---SSLGSLSKLRDLKLWLN-----MLEGEI 455
Query: 735 PD------ILTGIILSSNRFDGVIPTSIANLKGXXXXXXXXXXXXGHIPSCLGNLTNLES 788
P L +IL N G IP+ ++N G IP +G L NL
Sbjct: 456 PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI 515
Query: 789 LDLSNNRF 796
L LSNN F
Sbjct: 516 LKLSNNSF 523
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 157 bits (398), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 200/650 (30%), Positives = 278/650 (42%), Gaps = 114/650 (17%)
Query: 223 SLKELDLSANILSSELPT--SIGNLSSLKKLDLSQNRFFSELPTSIGN---LGSLKVLDL 277
SL LDLS N LS + T S+G+ S LK L++S N + P + L SL+VLDL
Sbjct: 101 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKVSGGLKLNSLEVLDL 158
Query: 278 SRNG-----------------LFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKV 320
S N L L +S NK SG+ S +L+ LD+ S +F +
Sbjct: 159 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGI 216
Query: 321 PHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALH------VGQIPSSLRNLTQLIV 374
P +G+ + LQ L ++ N SGD +I LK L+ VG IP L L
Sbjct: 217 PF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQY 273
Query: 375 LSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLT 434
LSL++N + G I DFL + L L LS N + S +
Sbjct: 274 LSLAENKFTGEIP-DFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG 332
Query: 435 EFP-NFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLP 493
E P + L L +LDLS N G++P+ L NLS +LLT
Sbjct: 333 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLT----------NLSASLLT---------- 372
Query: 494 GKTFDFSSNNLQGPLPVP-----PPETI--LYLVSNNSLTGEIPSWICNLNTLKNLVLSH 546
D SSNN GP+ +P P T+ LYL NN TG+IP + N + L +L LS
Sbjct: 373 ---LDLSSNNFSGPI-LPNLCQNPKNTLQELYL-QNNGFTGKIPPTLSNCSELVSLHLSF 427
Query: 547 NSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSL 606
N LSG +P LG+ S +L L L N G IP + L + L N G IP L
Sbjct: 428 NYLSGTIPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 486
Query: 607 VNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIID 666
NC+ L ++ L NN+++ P W+G L NL +L L +N+F G I DC L +D
Sbjct: 487 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC--RSLIWLD 544
Query: 667 LSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQ--------------DVIPPYGQVSTDL 712
L+ N F G +P+ F + RY+ +++ G S L
Sbjct: 545 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL 604
Query: 713 ----------ISTYDY----SLTMNSKGRMMTYNKIPDILTGII--------------LS 744
I++ Y S T ++ G MM + ++L+G I L
Sbjct: 605 NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLG 664
Query: 745 SNRFDGVIPTSIANLKGXXXXXXXXXXXXGHIPSCLGNLTNLESLDLSNN 794
N G IP + +L+G G IP + LT L +DLSNN
Sbjct: 665 HNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714
Score = 135 bits (341), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 190/674 (28%), Positives = 292/674 (43%), Gaps = 85/674 (12%)
Query: 40 KNTGHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFN-----SSEIPPEIINLL 94
K + + LDLS + L G + + +SL L++LN++ N + S + + +L
Sbjct: 97 KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 156
Query: 95 RLSYLNLSGASLSGQIPSEILEFXXXXXXXXXXXXGPGGRLELQKPNLANLVE--KLSNL 152
LS ++SGA++ G + S+ G L + ++ V+ + NL
Sbjct: 157 DLSANSISGANVVGWVLSD--------------GCGELKHLAISGNKISGDVDVSRCVNL 202
Query: 153 ETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGXXXXXXXXXXXXXXXRG 212
E LD+ + + IP L + S+L + + +L G + G
Sbjct: 203 EFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG 261
Query: 213 ELLVSIGNLHSLKELDLSANILSSELPTSI-GNLSSLKKLDLSQNRFFSELPTSIG---- 267
+ L SL+ L L+ N + E+P + G +L LDLS N F+ +P G
Sbjct: 262 P--IPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 319
Query: 268 ---------NLGSLKVLD--LSRNGLFELHLSFNKFSGEFPWSTRNFS-SLKILDLRSCS 315
N +D L GL L LSFN+FSGE P S N S SL LDL S +
Sbjct: 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 379
Query: 316 FWGKV-PHSIGN-FTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHV------GQIPSSLR 367
F G + P+ N LQ LYL N F+G + ++ N L +LH+ G IPSSL
Sbjct: 380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG 439
Query: 368 NLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLS-LLTKATSNTTSQKFRYV 426
+L++L L L N G I + + +K LE L+L N L+ + SN T+ ++
Sbjct: 440 SLSKLRDLKLWLNMLEGEIPQELMY--VKTLETLILDFNDLTGEIPSGLSNCTN--LNWI 495
Query: 427 GLRSCNLT-EFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRF 485
L + LT E P ++ +L IL LS N G IP L D + L L+L+ NL
Sbjct: 496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD--CRSLIWLDLNTNLFN-- 551
Query: 486 DQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLS 545
+P F S ++ N + G+ +I N K +
Sbjct: 552 ----GTIPAAMFKQSGK-----------------IAANFIAGKRYVYIKNDGMKKECHGA 590
Query: 546 HNSLS--GLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIP 603
N L G+ + L S ++ + G TF + +D+S+N+ G IP
Sbjct: 591 GNLLEFQGIRSEQLNRLSTRNPC-NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649
Query: 604 RSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLH 663
+ + + L L+LG+N IS + P +G L LN+L L SN G I P+ + L
Sbjct: 650 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI--PQAMSALTMLT 707
Query: 664 IIDLSNNRFTGKLP 677
IDLSNN +G +P
Sbjct: 708 EIDLSNNNLSGPIP 721
Score = 103 bits (258), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 163/592 (27%), Positives = 243/592 (41%), Gaps = 117/592 (19%)
Query: 43 GHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLS 102
G + L +S + + G ++ S + V+LE+L+++ N+F++ P + + L +L++S
Sbjct: 178 GELKHLAISGNKISGDVDVS----RCVNLEFLDVSSNNFSTGI--PFLGDCSALQHLDIS 231
Query: 103 GASLSGQIPSEILEFXXXX--XXXXXXXXGPGGRLELQKPNLANLVEKLSNLETLDLGDA 160
G LSG I GP L L+ L+ L L +
Sbjct: 232 GNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKS------------LQYLSLAEN 279
Query: 161 SIRSTIPHNLAN-LSSLSFVSLRNCELEGRILSSFGXXXXXXXXXXXXXXXRGEL-LVSI 218
IP L+ +L+ + L G + FG GEL + ++
Sbjct: 280 KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTL 339
Query: 219 GNLHSLKELDLSANILSSELPTSIGNLS-SLKKLDLSQNRFFSE-LPTSIGN-LGSLKVL 275
+ LK LDLS N S ELP S+ NLS SL LDLS N F LP N +L+ L
Sbjct: 340 LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 399
Query: 276 DLSRNG--------------LFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVP 321
L NG L LHLSFN SG P S + S L+ L L G++P
Sbjct: 400 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 459
Query: 322 HSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHV------GQIPSSLRNLTQLIVL 375
+ L+ L L FN+ +G++ + N +L + + G+IP + L L +L
Sbjct: 460 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 519
Query: 376 SLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKF--------RYV- 426
LS NS+ G I + L ++L L L++N + A S K RYV
Sbjct: 520 KLSNNSFSGNIPAE--LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVY 577
Query: 427 --------------------GLRS-----------CNLTE-------FPNFLKNQHHLVI 448
G+RS CN+T P F N ++
Sbjct: 578 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF-DNNGSMMF 636
Query: 449 LDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPL 508
LD+S N + G IPK + SM YL LNL HN ++ +P + D N+
Sbjct: 637 LDMSYNMLSGYIPKEI--GSMPYLFILNLGHNDIS------GSIPDEVGDLRGLNILD-- 686
Query: 509 PVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNF 560
+S+N L G IP + L L + LS+N+LSG +P+ +G F
Sbjct: 687 -----------LSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE-MGQF 726
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 143/489 (29%), Positives = 207/489 (42%), Gaps = 86/489 (17%)
Query: 330 LQLLYLTFNNFSGDL--LGSIGNLRSLKALHV--------GQIPSSLRNLTQLIVLSLSQ 379
L L L+ N+ SG + L S+G+ LK L+V G++ L+ L L VL LS
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK-LNSLEVLDLSA 160
Query: 380 NSYRGMIELDFLLT-SLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPN 438
NS G + ++L+ L+ L +S N++S + ++ + S N +
Sbjct: 161 NSISGANVVGWVLSDGCGELKHLAISGNKIS---GDVDVSRCVNLEFLDVSSNNFSTGIP 217
Query: 439 FLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFD 498
FL + L LD+S N++ G + A++ L K +
Sbjct: 218 FLGDCSALQHLDISGNKLSGDFSR-----------AISTCTEL-------------KLLN 253
Query: 499 FSSNNLQGPLPVPPPETILYL-VSNNSLTGEIPSWICN-LNTLKNLVLSHNSLSGLLPQC 556
SSN GP+P P +++ YL ++ N TGEIP ++ +TL L LS N G +P
Sbjct: 254 ISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF 313
Query: 557 LGNFSDELAVLDLQGNNFFGTIP-DTFIKESRLGVIDLSHNLFQGRIPRSLVNCSK-LEF 614
G+ S ++ NNF G +P DT +K L V+DLS N F G +P SL N S L
Sbjct: 314 FGSCSLLESLALSS-NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 372
Query: 615 LDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTG 674
LDL +N S LPNL + P+ + L + L NN FTG
Sbjct: 373 LDLSSNNFSGPI------LPNL-------------CQNPK-----NTLQELYLQNNGFTG 408
Query: 675 KLPSKSFLCWDAMKIVNTTELRYLQDVIPP-YGQVSTDLISTYDYSLTMNSKGRMMTYNK 733
K+P C + + + YL IP G +S D L +N M +
Sbjct: 409 KIPPTLSNCSELVSL--HLSFNYLSGTIPSSLGSLS----KLRDLKLWLN-----MLEGE 457
Query: 734 IPD------ILTGIILSSNRFDGVIPTSIANLKGXXXXXXXXXXXXGHIPSCLGNLTNLE 787
IP L +IL N G IP+ ++N G IP +G L NL
Sbjct: 458 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 517
Query: 788 SLDLSNNRF 796
L LSNN F
Sbjct: 518 ILKLSNNSF 526
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 82/331 (24%), Positives = 138/331 (41%), Gaps = 76/331 (22%)
Query: 19 ASWKPEEGDVDCC--SWDGVHCDKNTG--HVIKLDLSNSCLFGSINSSSSLFKLVHLEWL 74
+SW P DCC +W GV CD +T V LDLS L SSL L +L +L
Sbjct: 25 SSWLPT---TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFL 81
Query: 75 NLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFXXXXXXXXXXXXGPGGR 134
+ + IPP I L +L YL ++ ++SG IP
Sbjct: 82 YIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP----------------------- 118
Query: 135 LELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSF 194
+ + ++ L TLD ++ T+P ++++L +L ++ + G I S+
Sbjct: 119 ---------DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169
Query: 195 GXXXXXXXXXXXXXXXRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLS 254
G S L + + +S N L+ ++P + NL +L +DLS
Sbjct: 170 G---------------------SFSKLFT--SMTISRNRLTGKIPPTFANL-NLAFVDLS 205
Query: 255 QNRFFSELPTSIGNLGSLKVLDLSRNGL-FELHLSFNKFSGEFPWSTRNFSSLKILDLRS 313
+N + G+ + + + L++N L F+L G+ S +L LDLR+
Sbjct: 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL--------GKVGLS----KNLNGLDLRN 253
Query: 314 CSFWGKVPHSIGNFTRLQLLYLTFNNFSGDL 344
+G +P + L L ++FNN G++
Sbjct: 254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 74/157 (47%), Gaps = 4/157 (2%)
Query: 521 SNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPD 580
S N+L+G +P I +L L + N +SG +P G+FS + + N G IP
Sbjct: 133 SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP 192
Query: 581 TFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLI 640
TF L +DLS N+ +G + + + L N ++ +G NLN L
Sbjct: 193 TF-ANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLD 250
Query: 641 LRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLP 677
LR+N YG + + T F LH +++S N G++P
Sbjct: 251 LRNNRIYGTLPQGLTQLKF--LHSLNVSFNNLCGEIP 285
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 89/212 (41%), Gaps = 36/212 (16%)
Query: 497 FDFSSNNLQGPLPVP------PPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLS 550
D S NL P P+P P LY+ N+L G IP I L L L ++H ++S
Sbjct: 55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114
Query: 551 GLLPQCLG--------NFS---------------DELAVLDLQGNNFFGTIPDTFIKESR 587
G +P L +FS L + GN G IPD++ S+
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK 174
Query: 588 LGV-IDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTF 646
L + +S N G+IP + N + L F+DL N + G+ N + L N+
Sbjct: 175 LFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233
Query: 647 YGIIKEPRTDCGFSK-LHIIDLSNNRFTGKLP 677
+ + G SK L+ +DL NNR G LP
Sbjct: 234 AFDLGK----VGLSKNLNGLDLRNNRIYGTLP 261
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 92/225 (40%), Gaps = 10/225 (4%)
Query: 572 NNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLG 631
NN G IP K ++L + ++H G IP L L LD N +S T P +
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 632 TLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHI-IDLSNNRFTGKLPSKSFLCWDAMKIV 690
+LPNL + N G I P + FSKL + +S NR TGK+P +F + + V
Sbjct: 147 SLPNLVGITFDGNRISGAI--PDSYGSFSKLFTSMTISRNRLTGKIP-PTFANLN-LAFV 202
Query: 691 NTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDG 750
+ + D +G +T L NS + + L G+ L +NR G
Sbjct: 203 DLSRNMLEGDASVLFGSDK----NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYG 258
Query: 751 VIPTSIANLKGXXXXXXXXXXXXGHIPSCLGNLTNLESLDLSNNR 795
+P + LK G IP GNL + +NN+
Sbjct: 259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 107/269 (39%), Gaps = 50/269 (18%)
Query: 222 HSLKELDLSANILSSE--LPTSIGNLSSLKKLDLSQ-NRFFSELPTSIGNLGSLKVLDLS 278
+ + LDLS L +P+S+ NL L L + N +P +I L L L
Sbjct: 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL--- 106
Query: 279 RNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFN 338
+++ SG P +L LD + G +P SI + L + N
Sbjct: 107 -------YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159
Query: 339 NFSGDLLGSIGNLRSL-------KALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFL 391
SG + S G+ L + G+IP + NL L + LS+N G + L
Sbjct: 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEG--DASVL 216
Query: 392 LTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDL 451
S KN + + L+ N L+ VGL +L LDL
Sbjct: 217 FGSDKNTQKIHLAKNSLAF-----------DLGKVGL--------------SKNLNGLDL 251
Query: 452 SANRIHGKIPKWLLDPSMQYLNALNLSHN 480
NRI+G +P+ L +++L++LN+S N
Sbjct: 252 RNNRIYGTLPQGLTQ--LKFLHSLNVSFN 278
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 12/138 (8%)
Query: 626 FPSWLGTLPNLNVLILRS-NTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCW 684
PS L LP LN L + N G I P ++LH + +++ +G +P FL
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPI--PPAIAKLTQLHYLYITHTNVSGAIPD--FL-- 121
Query: 685 DAMKIVNTTELRY--LQDVIPPYGQVSTDLIS-TYDYSLTMNSKGRMMTYNKIPDILTGI 741
+K + T + Y L +PP +L+ T+D + S +Y + T +
Sbjct: 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI--SGAIPDSYGSFSKLFTSM 179
Query: 742 ILSSNRFDGVIPTSIANL 759
+S NR G IP + ANL
Sbjct: 180 TISRNRLTGKIPPTFANL 197
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 86/284 (30%), Positives = 123/284 (43%), Gaps = 33/284 (11%)
Query: 224 LKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRN--- 280
L+ELDL+A LS ELP+ + LS+LKKL LS N+F + S N SL L + N
Sbjct: 280 LQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338
Query: 281 ------------GLFELHLSFNKF--SGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGN 326
L EL LS + S RN S L+ L+L +
Sbjct: 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE 398
Query: 327 FTRLQLLYLTFNNFS-GDLLGSIGNLRSLKALHVGQ----IPSS--LRNLTQLIVLSLSQ 379
+L+LL L F D NL LK L++ I S L L L+L
Sbjct: 399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQG 458
Query: 380 NSY-RGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPN 438
N + +G I+ L +L LE LVLS LS + + + T+ + +V L LT +
Sbjct: 459 NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH-AFTSLKMMNHVDLSHNRLTS--S 515
Query: 439 FLKNQHHL--VILDLSANRIHGKIPKWLLDPSMQYLNALNLSHN 480
++ HL + L+L++N I +P L P + +NL N
Sbjct: 516 SIEALSHLKGIYLNLASNHISIILPSLL--PILSQQRTINLRQN 557
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 103/393 (26%), Positives = 145/393 (36%), Gaps = 98/393 (24%)
Query: 286 HLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLL 345
H FN S F FS L+ LDL + + ++P + + L+ L L+ N F
Sbjct: 264 HYFFNISSNTF----HCFSGLQELDL-TATHLSELPSGLVGLSTLKKLVLSANKFENLCQ 318
Query: 346 GSIGNLRSL---------KALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLK 396
S N SL K L +G L NL L L LS + + L +L
Sbjct: 319 ISASNFPSLTHLSIKGNTKRLELG--TGCLENLENLRELDLSHDDIETSDCCNLQLRNLS 376
Query: 397 NLEALVLSSNR-LSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANR 455
+L++L LS N LSL T+A E P L +LDL+ R
Sbjct: 377 HLQSLNLSYNEPLSLKTEA------------------FKECP-------QLELLDLAFTR 411
Query: 456 IHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPET 515
+ K + ++ L LNLSH+LL D SS L LP
Sbjct: 412 LKVKDAQSPFQ-NLHLLKVLNLSHSLL---------------DISSEQLFDGLPALQH-- 453
Query: 516 ILYLVSNNSLTGEIPSW--ICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNN 573
L L N+ G I + L L+ LVLS LS + D+ A L+ N
Sbjct: 454 -LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI---------DQHAFTSLKMMN 503
Query: 574 FFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTL 633
+DLSHN +L + + +L+L +N IS PS L L
Sbjct: 504 H----------------VDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPIL 546
Query: 634 PNLNVLILRSNTFYGIIKEPRTDCGFSKLHIID 666
+ LR N DC S ++ ++
Sbjct: 547 SQQRTINLRQNPL---------DCTCSNIYFLE 570
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 64/167 (38%), Gaps = 28/167 (16%)
Query: 527 GEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKES 586
E+PS + L+TLK LVLS N L NF L L ++GN K
Sbjct: 291 SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPS-LTHLSIKGNT----------KRL 339
Query: 587 RLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQI--SDTFPSWLGTLPNLNVLILRSN 644
LG L N L LDL ++ I SD L L +L L L N
Sbjct: 340 ELGT-------------GCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN 386
Query: 645 TFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVN 691
+ E +C +L ++DL+ R K F +K++N
Sbjct: 387 EPLSLKTEAFKEC--PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 84/328 (25%), Positives = 132/328 (40%), Gaps = 45/328 (13%)
Query: 285 LHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDL 344
++L ++FS + R F+ ++ LDL + G +P I L+ L L N+F
Sbjct: 258 INLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSFDQLC 316
Query: 345 LGSIGNLRSLKALHV-GQI------PSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKN 397
+ + SL+ L++ G + L L L L LS + + L +L++
Sbjct: 317 QINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRH 376
Query: 398 LEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIH 457
L+ L LS N +GL E P L +LD++ +H
Sbjct: 377 LQYLNLSYNE-----------------PLGLEDQAFKECP-------QLELLDVAFTHLH 412
Query: 458 GKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAV---------LPGKTFDFSSNNLQGPL 508
K P ++ L LNLSH LL +QH L G +F S + L
Sbjct: 413 VKAPHSPFQ-NLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLL 471
Query: 509 PVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLD 568
+ IL L S N L+ + ++ L + +L LSHNSL+G L + L+
Sbjct: 472 QMVGSLEILILSSCNLLSIDQQAFH-GLRNVNHLDLSHNSLTGDSMDALSHLKG--LYLN 528
Query: 569 LQGNNFFGTIPDTFIKESRLGVIDLSHN 596
+ NN P S+ +I+LSHN
Sbjct: 529 MASNNIRIIPPHLLPALSQQSIINLSHN 556
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 97/239 (40%), Gaps = 37/239 (15%)
Query: 146 VEKLSNLETLDLGDASIRSTIPHNLA--NLSSLSFVSLRNCELEGRILSSFGXXXXXXXX 203
+EKL NL+ LDL + I ++ NL NL L +++L E G +F
Sbjct: 345 LEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELL 404
Query: 204 XXXXXXXRGELLVS-IGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSEL 262
+ S NLH L+ L+LS +L + + L L+ L+L N F
Sbjct: 405 DVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQD-- 462
Query: 263 PTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPH 322
GS+ S+ L ++ SL+IL L SC+
Sbjct: 463 -------GSI-----SKTNLLQM-----------------VGSLEILILSSCNLLSIDQQ 493
Query: 323 SIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNS 381
+ + L L+ N+ +GD S+ L LK L++ +++R + ++ +LSQ S
Sbjct: 494 AFHGLRNVNHLDLSHNSLTGD---SMDALSHLKGLYLNMASNNIRIIPPHLLPALSQQS 549
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 128/290 (44%), Gaps = 56/290 (19%)
Query: 218 IGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPT-SIGNLGSLKVLD 276
I ++SLK+L L+AN + + SL+ L + N +L T + L +L+ LD
Sbjct: 296 IEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLD 355
Query: 277 LSRNG----------------LFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKV 320
LS + L L+LS+N+ G + + L++LD+ K
Sbjct: 356 LSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKA 415
Query: 321 PHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQN 380
PHS F L LL + N S LL + H+ L L L L+L N
Sbjct: 416 PHSP--FQNLHLLRVL--NLSHCLLDTSNQ-------HL------LAGLQDLRHLNLQGN 458
Query: 381 SYR-GMIELDFLLTSLKNLEALVLSS-NRLSLLTKATSNTTSQKFRYVGLRSCNLTEFP- 437
S++ G I LL + +LE L+LSS N LS+ +A + GLR+ N +
Sbjct: 459 SFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQA----------FHGLRNVNHLDLSH 508
Query: 438 -----NFLKNQHHL--VILDLSANRIHGKIPKWLLDPSMQYLNALNLSHN 480
+ + HL + L++++N I IP LL P++ + +NLSHN
Sbjct: 509 NSLTGDSMDALSHLKGLYLNMASNNIR-IIPPHLL-PALSQQSIINLSHN 556
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 70/165 (42%), Gaps = 28/165 (16%)
Query: 529 IPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRL 588
+PS I +N+LK LVL+ NS D+L ++ F ++ D +IK +
Sbjct: 292 LPSGIEGMNSLKKLVLNANSF------------DQLCQINAAS---FPSLRDLYIK-GNM 335
Query: 589 GVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQI--SDTFPSWLGTLPNLNVLILRSNTF 646
+DL R L L+ LDL ++ I SD L L +L L L N
Sbjct: 336 RKLDLG--------TRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEP 387
Query: 647 YGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVN 691
G+ + +C +L ++D++ K P F ++++N
Sbjct: 388 LGLEDQAFKEC--PQLELLDVAFTHLHVKAPHSPFQNLHLLRVLN 430
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 7 LDAWKFD--CRPKAASWKPEEGDV----DCCSWD-GVHCDKNTGHVIKLDLSNSCLFGSI 59
L+A FD C+ AAS+ P D+ + D G C + ++ KLDLS+S + S
Sbjct: 307 LNANSFDQLCQINAASF-PSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASD 365
Query: 60 NSSSSLFKLVHLEWLNLAFND 80
+ L L HL++LNL++N+
Sbjct: 366 CCNLQLKNLRHLQYLNLSYNE 386
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 55/133 (41%), Gaps = 8/133 (6%)
Query: 536 LNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSH 595
L L L LSHN L L LG L VLD+ N L + L
Sbjct: 76 LPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 596 NLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRT 655
N + P L KLE L L NNQ+++ L L NL+ L+L+ N+ Y I K
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPK---- 189
Query: 656 DCGFSKLHIIDLS 668
GF H++ +
Sbjct: 190 --GFFGSHLLPFA 200
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 55/133 (41%), Gaps = 8/133 (6%)
Query: 536 LNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSH 595
L L L LSHN L L LG L VLD+ N L + L
Sbjct: 76 LPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 596 NLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRT 655
N + P L KLE L L NNQ+++ L L NL+ L+L+ N+ Y I K
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPK---- 189
Query: 656 DCGFSKLHIIDLS 668
GF H++ +
Sbjct: 190 --GFFGSHLLPFA 200
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 55/133 (41%), Gaps = 8/133 (6%)
Query: 536 LNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSH 595
L L L LSHN L L LG L VLD+ N L + L
Sbjct: 76 LPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 596 NLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRT 655
N + P L KLE L L NNQ+++ L L NL+ L+L+ N+ Y I K
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPK---- 189
Query: 656 DCGFSKLHIIDLS 668
GF H++ +
Sbjct: 190 --GFFGSHLLPFA 200
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 55/133 (41%), Gaps = 8/133 (6%)
Query: 536 LNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSH 595
L L L LSHN L L LG L VLD+ N L + L
Sbjct: 76 LPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 596 NLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRT 655
N + P L KLE L L NNQ+++ L L NL+ L+L+ N+ Y I K
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPK---- 189
Query: 656 DCGFSKLHIIDLS 668
GF H++ +
Sbjct: 190 --GFFGSHLLPFA 200
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 82/292 (28%), Positives = 125/292 (42%), Gaps = 49/292 (16%)
Query: 224 LKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGN--------------- 268
L+ELDL+A L LP+ + L+ LKKL LS N F S N
Sbjct: 277 LQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKK 335
Query: 269 ----------LGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWG 318
LG+L+ LDLS N + + S +N S L+ L+L G
Sbjct: 336 LHLGVGCLEKLGNLQTLDLSHNDI--------EASDCCSLQLKNLSHLQTLNLSHNEPLG 387
Query: 319 KVPHSIGNFTRLQLLYLTFNNFSGDLLGS-IGNLRSLKALHVGQI------PSSLRNLTQ 371
+ +L+LL L F + S NL L+ L++ L L
Sbjct: 388 LQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPV 447
Query: 372 LIVLSLSQNSYR-GMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRS 430
L L+L N ++ G I LL ++ +LE L+LSS L + + ++ K +V L
Sbjct: 448 LRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLG-KMSHVDLSH 506
Query: 431 CNLTEFPNFLKNQHHL--VILDLSANRIHGKIPKWLLDPSMQYLNALNLSHN 480
+LT + + + HL + L+L+AN I+ P+ L P + + +NLSHN
Sbjct: 507 NSLT--CDSIDSLSHLKGIYLNLAANSINIISPRLL--PILSQQSTINLSHN 554
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 72/175 (41%), Gaps = 38/175 (21%)
Query: 621 QISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKS 680
Q S T WLGT +++ + S G+ C S + ++L +RF+ + S +
Sbjct: 220 QNSTTQSLWLGTFEDIDDEDISSAMLKGL-------CEMS-VESLNLQEHRFS-DISSTT 270
Query: 681 FLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTG 740
F C+ T+L+ L DL +T+ L KG ++L
Sbjct: 271 FQCF--------TQLQEL------------DLTATHLKGLPSGMKGL--------NLLKK 302
Query: 741 IILSSNRFDGVIPTSIANLKGXXXXXXXXXXXXGHI-PSCLGNLTNLESLDLSNN 794
++LS N FD + S AN H+ CL L NL++LDLS+N
Sbjct: 303 LVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHN 357
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 104/400 (26%), Positives = 157/400 (39%), Gaps = 75/400 (18%)
Query: 222 HSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNG 281
H L L L+ N L TS+ SLK L L Q + + NL +L+ L L N
Sbjct: 78 HQLSTLVLTGNPLIFMAETSLNGPKSLKHLFLIQTGISNLEFIPVHNLENLESLYLGSN- 136
Query: 282 LFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFN--N 339
H+S KF +FP RN LK+LD ++ + + + + L L FN N
Sbjct: 137 ----HISSIKFPKDFP--ARN---LKVLDFQNNAIHYISREDMRSLEQAINLSLNFNGNN 187
Query: 340 FSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLE 399
G LG+ + ++L+ G P+ LS+ N + L + ++++
Sbjct: 188 VKGIELGAFDS-TIFQSLNFGGTPN----------LSVIFNGLQNSTTQSLWLGTFEDID 236
Query: 400 ALVLSSNRLSLLTKATSNTTS-QKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHG 458
+SS L L + + + + Q+ R+ + S T F F + Q LDL+A + G
Sbjct: 237 DEDISSAMLKGLCEMSVESLNLQEHRFSDISS---TTFQCFTQLQE----LDLTATHLKG 289
Query: 459 KIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILY 518
+P + + L L LS N FDQ + S+ N P T LY
Sbjct: 290 -LPSGM--KGLNLLKKLVLSVN---HFDQLCQI--------SAANF-------PSLTHLY 328
Query: 519 LVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTI 578
+ N + L L+ L LSHN + SD LQ N
Sbjct: 329 IRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEA---------SD---CCSLQLKNL---- 372
Query: 579 PDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLG 618
S L ++LSHN G ++ C +LE LDL
Sbjct: 373 -------SHLQTLNLSHNEPLGLQSQAFKECPQLELLDLA 405
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 62/146 (42%), Gaps = 6/146 (4%)
Query: 146 VEKLSNLETLDLGDASIRST--IPHNLANLSSLSFVSLRNCELEGRILSSFGXXXXXXXX 203
+EKL NL+TLDL I ++ L NLS L ++L + E G +F
Sbjct: 343 LEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELL 402
Query: 204 XXXXXXXRGELLVS-IGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSEL 262
S NLH L+ L+L+ L + + L L+ L+L N F
Sbjct: 403 DLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGT 462
Query: 263 PTS---IGNLGSLKVLDLSRNGLFEL 285
T + +GSL+VL LS GL +
Sbjct: 463 ITKTNLLQTVGSLEVLILSSCGLLSI 488
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 57/123 (46%), Gaps = 12/123 (9%)
Query: 221 LHSLKELDLSANILSSE-LPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSR 279
L SL+ L ++ N LP L +L LDLSQ + PT+ +L SL+VL++S
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503
Query: 280 NGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNF-TRLQLLYLTFN 338
N F L FP+ N SL++LD + +F + L L LT N
Sbjct: 504 NNFFSL--------DTFPYKCLN--SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 553
Query: 339 NFS 341
+F+
Sbjct: 554 DFA 556
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Query: 152 LETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGXXXXXXXXXXXXXXXR 211
L+ LDL I++ +LS LS + L ++ L +F
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113
Query: 212 GELLVSIGNLHSLKELDLSANILSS-ELPTSIGNLSSLKKLDLSQNR 257
IG+L +LKEL+++ N++ S +LP NL++L+ LDLS N+
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 95/357 (26%), Positives = 133/357 (37%), Gaps = 110/357 (30%)
Query: 245 LSSLKKLDLSQNR---FFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTR 301
L SLK+L + N+ FSE+ +L SL+ LDLSRNGL F G S
Sbjct: 324 LKSLKRLTFTSNKGGNAFSEV-----DLPSLEFLDLSRNGL--------SFKGCCSQSDF 370
Query: 302 NFSSLKILDLRSCSFWGKVPHSIGNFTRL-QLLYLTFNNFSGDLLGSIGNLRSLKALHVG 360
+SLK LDL SF G + S NF L QL +L F + NL+ + V
Sbjct: 371 GTTSLKYLDL---SFNGVITMS-SNFLGLEQLEHLDFQH---------SNLKQMSEFSVF 417
Query: 361 QIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTS 420
SLRNL I L +S R + + + L +LE L K N+
Sbjct: 418 L---SLRNL---IYLDISHTHTR--VAFNGIFNGLSSLEVL-----------KMAGNSFQ 458
Query: 421 QKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHN 480
+ F P+ +L LDLS ++ P S+ L LN+SHN
Sbjct: 459 ENF------------LPDIFTELRNLTFLDLSQCQLEQLSPTAF--NSLSSLQVLNMSHN 504
Query: 481 LLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLK 540
D P + C LN+L+
Sbjct: 505 NFFSLDTFP------------------------------------------YKC-LNSLQ 521
Query: 541 NLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPD----TFIKESRLGVIDL 593
L S N + Q L +F LA L+L N+F T +IK+ R ++++
Sbjct: 522 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEV 578
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 60/131 (45%), Gaps = 7/131 (5%)
Query: 285 LHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDL 344
L LSFN +S +F L++LDL C + + + L L LT N
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 345 LGSIGNLRSLKALHVGQIP-SSLRN-----LTQLIVLSLSQNSYRGMIELDFLLTSLKNL 398
LG+ L SL+ L + +SL N L L L+++ N + +L ++L NL
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS-FKLPEYFSNLTNL 151
Query: 399 EALVLSSNRLS 409
E L LSSN++
Sbjct: 152 EHLDLSSNKIQ 162
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 57/123 (46%), Gaps = 12/123 (9%)
Query: 221 LHSLKELDLSANILSSE-LPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSR 279
L SL+ L ++ N LP L +L LDLSQ + PT+ +L SL+VL++S
Sbjct: 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527
Query: 280 NGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNF-TRLQLLYLTFN 338
N F L FP+ N SL++LD + +F + L L LT N
Sbjct: 528 NNFFSL--------DTFPYKCLN--SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 577
Query: 339 NFS 341
+F+
Sbjct: 578 DFA 580
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Query: 152 LETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGXXXXXXXXXXXXXXXR 211
L+ LDL I++ +LS LS + L ++ L +F
Sbjct: 78 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 137
Query: 212 GELLVSIGNLHSLKELDLSANILSS-ELPTSIGNLSSLKKLDLSQNR 257
IG+L +LKEL+++ N++ S +LP NL++L+ LDLS N+
Sbjct: 138 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 184
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 7/130 (5%)
Query: 285 LHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDL 344
L LSFN +S +F L++LDL C + + + L L LT N
Sbjct: 57 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 116
Query: 345 LGSIGNLRSLKALHVGQIP-SSLRN-----LTQLIVLSLSQNSYRGMIELDFLLTSLKNL 398
LG+ L SL+ L + +SL N L L L+++ N + +L ++L NL
Sbjct: 117 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS-FKLPEYFSNLTNL 175
Query: 399 EALVLSSNRL 408
E L LSSN++
Sbjct: 176 EHLDLSSNKI 185
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 88/236 (37%), Gaps = 58/236 (24%)
Query: 48 LDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLS 107
LDLS + L S S F + L++L+L+FN + + + L +L +L+ ++L
Sbjct: 376 LDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT--MSSNFLGLEQLEHLDFQHSNLK 433
Query: 108 GQIPSEILEFXXXXXXXXXXXXGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRST-I 166
SE F R+ + LS+LE L + S + +
Sbjct: 434 QM--SEFSVFLSLRNLIYLDISHTHTRVAFN-----GIFNGLSSLEVLKMAGNSFQENFL 486
Query: 167 PHNLANLSSLSFVSLRNCELEGRILSSFGXXXXXXXXXXXXXXXRGELLVSIGNLHSLKE 226
P L +L+F+ L C+LE
Sbjct: 487 PDIFTELRNLTFLDLSQCQLE--------------------------------------- 507
Query: 227 LDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGL 282
LS PT+ +LSSL+ L++S N FFS L SL+VLD S N +
Sbjct: 508 -QLS--------PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 554
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 129/580 (22%), Positives = 224/580 (38%), Gaps = 87/580 (15%)
Query: 150 SNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGXXXXXXXXXXXXXX 209
S+ + +DL ++ ++ +N S L ++ L CE+E ++
Sbjct: 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91
Query: 210 XRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFS-ELPTSIGN 268
+ S L SL+ L L+S IG L +LKKL+++ N S +LP N
Sbjct: 92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151
Query: 269 LGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFS-SLKILD-LRSCSFWGKVPHSI-- 324
L +L +DLS N + + ++ +F E P + SL +D ++ +F G H +
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTL 211
Query: 325 -GNFTRLQLLYLTFNNFSG-----DLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLS 378
GNF ++ N +G +LG + R+L+ PS + L + +
Sbjct: 212 RGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFE----PSIMEGLCDVTI---- 263
Query: 379 QNSYRGMIELDF-----LLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNL 433
+ +R DF L N+ A+ L+ + L + K++ + + C L
Sbjct: 264 -DEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHF---KWQSLSIIRCQL 319
Query: 434 TEFPN----FLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHP 489
+FP FLK+ L L+ N+ K L PS+ Y L+LS N L+
Sbjct: 320 KQFPTLDLPFLKS------LTLTMNKGSISFKKVAL-PSLSY---LDLSRNALS------ 363
Query: 490 AVLPG--KTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHN 547
G D +N+L+ L L N ++ + + L L++L H+
Sbjct: 364 --FSGCCSYSDLGTNSLRH----------LDLSFNGAII--MSANFMGLEELQHLDFQHS 409
Query: 548 SLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQ-GRIPRSL 606
+L + ++L LD+ N F+ + L + ++ N F+ +
Sbjct: 410 TLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF 469
Query: 607 VNCSKLEFLDLGNNQISDTFPSWLGTLPNL--------NVLILRSNTFYGIIKEPRTDCG 658
N + L FLDL Q+ TL L N+L L S+ + + DC
Sbjct: 470 ANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCS 529
Query: 659 FSK--------------LHIIDLSNNRFTGKLPSKSFLCW 684
F++ L +L+NN + FL W
Sbjct: 530 FNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQW 569
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 57/123 (46%), Gaps = 12/123 (9%)
Query: 221 LHSLKELDLSANILSSE-LPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSR 279
L SL+ L ++ N LP L +L LDLSQ + PT+ +L SL+VL++S
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
Query: 280 NGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNF-TRLQLLYLTFN 338
N F L FP+ N SL++LD + +F + L L LT N
Sbjct: 209 NNFFSL--------DTFPYKCLN--SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258
Query: 339 NFS 341
+F+
Sbjct: 259 DFA 261
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 115/285 (40%), Gaps = 44/285 (15%)
Query: 211 RGELLVSIGNLHSLKELDLSANILSSELPTSI-GNLSSLKKLDLSQNRFFSELPTSIGNL 269
+G V G S L+L +N L S LP + L+ L KL LS N + S +
Sbjct: 17 KGLTSVPTGIPSSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDF 75
Query: 270 G--SLKVLDLSRNGLFEL-----------HLSFN----KFSGEFP--WSTRNFSSLKILD 310
G SLK LDLS NG+ + HL F K EF S RN L I
Sbjct: 76 GTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 135
Query: 311 LRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSI-GNLRSLKALHVGQI------P 363
+ + + + L++L + N+F + L I LR+L L + Q P
Sbjct: 136 THTRVAFNGI---FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 192
Query: 364 SSLRNLTQLIVLSLSQNSYRGMIELD-FLLTSLKNLEALVLSSNRLSLLTKATSNTTSQK 422
++ +L+ L VL++S N++ LD F L +L+ L S N + K
Sbjct: 193 TAFNSLSSLQVLNMSHNNF---FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS 249
Query: 423 FRYVGLR------SCNLTEFPNFLKNQHHLVILDLSANRIHGKIP 461
++ L +C F ++K+Q L++ R+ P
Sbjct: 250 LAFLNLTQNDFACTCEHQSFLQWIKDQRQLLV---EVERMECATP 291
Score = 32.7 bits (73), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 586 SRLGVIDLSHNLFQGR-IPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSN 644
S L V+ ++ N FQ +P L FLDL Q+ P+ +L +L VL + N
Sbjct: 150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209
Query: 645 TFYGIIKEPRTDCGFSKLHIIDLSNNR 671
F+ + P + L ++D S N
Sbjct: 210 NFFSLDTFPYK--CLNSLQVLDYSLNH 234
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 94/364 (25%), Positives = 132/364 (36%), Gaps = 106/364 (29%)
Query: 236 SELPTSIGNLSSLKKLDLSQNRFFSELPTSI-GNLGSLKVLDLSRNGLFELHLSFNKFSG 294
+ +PT I SS +L+L N+ S LP + L L L LS NGL F G
Sbjct: 20 TSVPTGIP--SSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSSNGL--------SFKG 68
Query: 295 EFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRL-QLLYLTFNNFSGDLLGSIGNLRS 353
S +SLK LDL SF G + S NF L QL +L F + NL+
Sbjct: 69 CCSQSDFGTTSLKYLDL---SFNGVITMS-SNFLGLEQLEHLDFQH---------SNLKQ 115
Query: 354 LKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTK 413
+ V SLRNL I L +S R + + + L +LE L K
Sbjct: 116 MSEFSVFL---SLRNL---IYLDISHTHTR--VAFNGIFNGLSSLEVL-----------K 156
Query: 414 ATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLN 473
N+ + F P+ +L LDLS ++ P S+ L
Sbjct: 157 MAGNSFQENF------------LPDIFTELRNLTFLDLSQCQLEQLSPTAF--NSLSSLQ 202
Query: 474 ALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWI 533
LN+SHN D P +
Sbjct: 203 VLNMSHNNFFSLDTFP------------------------------------------YK 220
Query: 534 CNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPD----TFIKESRLG 589
C LN+L+ L S N + Q L +F LA L+L N+F T +IK+ R
Sbjct: 221 C-LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQL 279
Query: 590 VIDL 593
++++
Sbjct: 280 LVEV 283
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 129/580 (22%), Positives = 224/580 (38%), Gaps = 87/580 (15%)
Query: 150 SNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGXXXXXXXXXXXXXX 209
S+ + +DL ++ ++ +N S L ++ L CE+E ++
Sbjct: 27 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 86
Query: 210 XRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFS-ELPTSIGN 268
+ S L SL+ L L+S IG L +LKKL+++ N S +LP N
Sbjct: 87 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 146
Query: 269 LGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFS-SLKILD-LRSCSFWGKVPHSI-- 324
L +L +DLS N + + ++ +F E P + SL +D ++ +F G H +
Sbjct: 147 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTL 206
Query: 325 -GNFTRLQLLYLTFNNFSG-----DLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLS 378
GNF ++ N +G +LG + R+L+ PS + L + +
Sbjct: 207 RGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFE----PSIMEGLCDVTI---- 258
Query: 379 QNSYRGMIELDF-----LLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNL 433
+ +R DF L N+ A+ L+ + L + K++ + + C L
Sbjct: 259 -DEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHF---KWQSLSIIRCQL 314
Query: 434 TEFPN----FLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHP 489
+FP FLK+ L L+ N+ K L PS+ Y L+LS N L+
Sbjct: 315 KQFPTLDLPFLKS------LTLTMNKGSISFKKVAL-PSLSY---LDLSRNALS------ 358
Query: 490 AVLPG--KTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHN 547
G D +N+L+ L L N ++ + + L L++L H+
Sbjct: 359 --FSGCCSYSDLGTNSLRH----------LDLSFNGAII--MSANFMGLEELQHLDFQHS 404
Query: 548 SLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQ-GRIPRSL 606
+L + ++L LD+ N F+ + L + ++ N F+ +
Sbjct: 405 TLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF 464
Query: 607 VNCSKLEFLDLGNNQISDTFPSWLGTLPNL--------NVLILRSNTFYGIIKEPRTDCG 658
N + L FLDL Q+ TL L N+L L S+ + + DC
Sbjct: 465 ANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCS 524
Query: 659 FSK--------------LHIIDLSNNRFTGKLPSKSFLCW 684
F++ L +L+NN + FL W
Sbjct: 525 FNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQW 564
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 88/354 (24%), Positives = 133/354 (37%), Gaps = 51/354 (14%)
Query: 301 RNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVG 360
RN +L+ILDL S + P + L L L F S +L G R+LKAL
Sbjct: 70 RNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKD-GYFRNLKALTRL 128
Query: 361 QIPSSLRNLTQLIVLSLSQNSYRGMIELDF-----LLTSLKNLEALVLSSNRLSLLTKAT 415
+ +N + + L S + +DF L LE L LS + A
Sbjct: 129 DLS---KNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL--QGKTLSFFSLAA 183
Query: 416 SNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNAL 475
++ S+ V C + F N + L ILD+S N W +D + + NA+
Sbjct: 184 NSLYSRV--SVDWGKC-MNPFRNMV-----LEILDVSGN-------GWTVDITGNFSNAI 228
Query: 476 NLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICN 535
+ S H + G F F +N++ P N+ G S
Sbjct: 229 SKSQAFSLILAHH---IMGAGFGF--HNIKDP-------------DQNTFAGLARS---- 266
Query: 536 LNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSH 595
++++L LSH + L + D L VL+L N + F L V++LS+
Sbjct: 267 --SVRHLDLSHGFVFSLNSRVFETLKD-LKVLNLAYNKINKIADEAFYGLDNLQVLNLSY 323
Query: 596 NLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGI 649
NL + K+ ++DL N I+ L L L LR N I
Sbjct: 324 NLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI 377
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 128/524 (24%), Positives = 186/524 (35%), Gaps = 110/524 (20%)
Query: 149 LSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGXXXXXXXXXXXXX 208
L NL LDLG + I P L L + L C L +L
Sbjct: 72 LPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKD--------------- 116
Query: 209 XXRGELLVSIGNLHSLKELDLSAN-ILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIG 267
NL +L LDLS N I S L S G L+SLK +D S N+ F +
Sbjct: 117 -------GYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELE 169
Query: 268 NL--GSLKVLDLSRNGLF-ELHLSFNKFSGEFPWSTRNFSSLKILDLR----SCSFWGKV 320
L +L L+ N L+ + + + K F RN L+ILD+ + G
Sbjct: 170 PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF----RNM-VLEILDVSGNGWTVDITGNF 224
Query: 321 PHSIGNFTRLQLLYLTF----------------NNFSGDLLGSIGNLRSLKALHVGQIPS 364
++I L+ N F+G S+ +L
Sbjct: 225 SNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR 284
Query: 365 SLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTS-QKF 423
L L VL+L+ N + + F L NL+ L LS N L L +SN K
Sbjct: 285 VFETLKDLKVLNLAYNKINKIADEAFY--GLDNLQVLNLSYNLLGEL--YSSNFYGLPKV 340
Query: 424 RYVGLRSCNLTEFPN----FLKNQHHLVILDLSANRIH--GKIPKWLLD-------PSMQ 470
Y+ L+ ++ + FL+ L + D + IH IP L P +
Sbjct: 341 AYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKIN 400
Query: 471 Y-LNALNLSHNLLTRFD--------QHPAVLPGKTFDFSS-NNLQGPLPVPPPETILYLV 520
N ++LS N L D H +L FSS + Q P P E + +
Sbjct: 401 LTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQL--FL 458
Query: 521 SNNSLTGEIPSWIC-----NLNTLKNLVLSHNSLSGLLPQCLGNFS-------------- 561
N L + +C L+ L+ L L+HN L+ L P + +
Sbjct: 459 GENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV 518
Query: 562 -------DELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLF 598
L +LD+ N PD F+ L V+D++HN F
Sbjct: 519 LSHNDLPANLEILDISRNQLLAPNPDVFVS---LSVLDITHNKF 559
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 53/130 (40%), Gaps = 8/130 (6%)
Query: 536 LNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSH 595
L L L LSHN L L LG L VLD+ N L + L
Sbjct: 76 LPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 596 NLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRT 655
N + P L KLE L L NN +++ L L NL+ L+L+ N+ Y I K
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPK---- 189
Query: 656 DCGFSKLHII 665
GF H++
Sbjct: 190 --GFFGSHLL 197
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 54/133 (40%), Gaps = 8/133 (6%)
Query: 536 LNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSH 595
L L L LSHN L L LG L VLD+ N L + L
Sbjct: 77 LPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 134
Query: 596 NLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRT 655
N + P L KLE L L NN +++ L L NL+ L+L+ N+ Y I K
Sbjct: 135 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK---- 190
Query: 656 DCGFSKLHIIDLS 668
GF H++ +
Sbjct: 191 --GFFGSHLLPFA 201
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 54/133 (40%), Gaps = 8/133 (6%)
Query: 536 LNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSH 595
L L L LSHN L L LG L VLD+ N L + L
Sbjct: 76 LPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 596 NLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRT 655
N + P L KLE L L NN +++ L L NL+ L+L+ N+ Y I K
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK---- 189
Query: 656 DCGFSKLHIIDLS 668
GF H++ +
Sbjct: 190 --GFFGSHLLPFA 200
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 105/254 (41%), Gaps = 42/254 (16%)
Query: 221 LHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRN 280
L L+ L++ N + S + L SLK L LS+ TS+ L + + L+ +
Sbjct: 328 LKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTF------TSLQTLTNETFVSLAHS 381
Query: 281 GLFELHLSFNKFS----GEFPWSTRNFSSLKILDLRSCSFWGKVP-HSIGNFTRLQLLYL 335
L L+L+ N S G F W L+ILDL K+ + +YL
Sbjct: 382 PLLTLNLTKNHISKIANGTFSW----LGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYL 437
Query: 336 TFNNFSGDLLGSIGNLRSLKALHVGQI--------PSSLRNLTQLIVLSLSQNSYRGMIE 387
++N + S + SL+ L + ++ PS R L L +L LS N+ + E
Sbjct: 438 SYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANINE 497
Query: 388 LDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLV 447
LL L+NLE L N L+ L K N NFLK HL
Sbjct: 498 --DLLEGLENLEILDFQHNNLARLWKR----------------ANPGGPVNFLKGLSHLH 539
Query: 448 ILDLSANRIHGKIP 461
IL+L +N + +IP
Sbjct: 540 ILNLESNGL-DEIP 552
Score = 37.0 bits (84), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 578 IPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLN 637
IPD S + V++L+HN + P + S+L LD G N IS P LP L
Sbjct: 19 IPDDL--PSNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLK 76
Query: 638 VLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNN 670
VL L+ N I + C + L +DL +N
Sbjct: 77 VLNLQHNELSQISDQTFVFC--TNLTELDLMSN 107
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Query: 528 EIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESR 587
++PS I LN L+HN L L P +S +LA+LD N+ P+
Sbjct: 22 DLPSNITVLN------LTHNQLRRLPPTNFTRYS-QLAILDAGFNSISKLEPELCQILPL 74
Query: 588 LGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQI 622
L V++L HN ++ V C+ L LDL +N I
Sbjct: 75 LKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSI 109
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 54/133 (40%), Gaps = 8/133 (6%)
Query: 536 LNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSH 595
L L L LSHN L L LG L VLD+ N L + L
Sbjct: 76 LPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 596 NLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRT 655
N + P L KLE L L NN +++ L L NL+ L+L+ N+ Y I K
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK---- 189
Query: 656 DCGFSKLHIIDLS 668
GF H++ +
Sbjct: 190 --GFFGSHLLPFA 200
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 54/133 (40%), Gaps = 8/133 (6%)
Query: 536 LNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSH 595
L L L LSHN L L LG L VLD+ N L + L
Sbjct: 76 LPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 596 NLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRT 655
N + P L KLE L L NN +++ L L NL+ L+L+ N+ Y I K
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK---- 189
Query: 656 DCGFSKLHIIDLS 668
GF H++ +
Sbjct: 190 --GFFGSHLLPFA 200
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 84/348 (24%), Positives = 124/348 (35%), Gaps = 55/348 (15%)
Query: 347 SIGNLRSLKALHVGQIPSSL-------RNLTQLIVLSLSQN--------SYRGMIELDFL 391
S L+ L+ L V Q L R L+ LI+L L N ++ G+ L+ L
Sbjct: 49 SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108
Query: 392 LTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEF--PNFLKNQHHLVIL 449
+ NL+ VLS N LT + LR N+ + +F N +L
Sbjct: 109 TLTQCNLDGAVLSGNFFKPLT---------SLEMLVLRDNNIKKIQPASFFLNMRRFHVL 159
Query: 450 DLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQH-----PAVLPGK-----TFDF 499
DL+ N++ + LL+ ++ L LS L +++ P K T D
Sbjct: 160 DLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDL 219
Query: 500 SSNNLQGPLP-----VPPPETILYLVSNNSLTGEIPSWICNLNT-------------LKN 541
S N + + I L+ +NS N +K
Sbjct: 220 SGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKT 279
Query: 542 LVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGR 601
LS + + LL +F+D L L L N + F + L ++LS N
Sbjct: 280 CDLSKSKIFALLKSVFSHFTD-LEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSI 338
Query: 602 IPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGI 649
R N KLE LDL N I LPNL L L +N +
Sbjct: 339 DSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSV 386
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 106/446 (23%), Positives = 169/446 (37%), Gaps = 84/446 (18%)
Query: 221 LHSLKEL-------DLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELP------TSIG 267
LH + EL DLS N ++ TS L L+ L + Q + P +
Sbjct: 22 LHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQ-----QTPGLVIRNNTFR 76
Query: 268 NLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNF 327
L SL +L L N +L +G F ++L++L L C+ G V GNF
Sbjct: 77 GLSSLIILKLDYNQFLQLE------TGAF----NGLANLEVLTLTQCNLDGAVLS--GNF 124
Query: 328 ----TRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYR 383
T L++L L NN +K + Q S N+ + VL L+ N +
Sbjct: 125 FKPLTSLEMLVLRDNN--------------IKKI---QPASFFLNMRRFHVLDLTFNKVK 167
Query: 384 GMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQ 443
+ E D L K+ L LSS L + + ++G C N KN
Sbjct: 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEY----------WLGWEKCG-----NPFKNT 212
Query: 444 HHLVILDLSANRIHGKIPKWLLDP----SMQYLNALNLSHNLLTRFDQHPAVLPGKTFDF 499
+ LDLS N + K D +Q L L+ S+N+ + F H F F
Sbjct: 213 S-ITTLDLSGNGFKESMAKRFFDAIAGTKIQSL-ILSNSYNMGSSFG-HTNFKDPDNFTF 269
Query: 500 SSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGN 559
G ++ ++ + + S + L+ L L+ N ++ +
Sbjct: 270 KGLEASGVKTCDLSKSKIFAL--------LKSVFSHFTDLEQLTLAQNEINKIDDNAFWG 321
Query: 560 FSDELAVLDLQGNNFFGTIPDTFIKE-SRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLG 618
+ L L+L NF G+I + +L V+DLS+N + +S + L+ L L
Sbjct: 322 LT-HLLKLNL-SQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALD 379
Query: 619 NNQISDTFPSWLGTLPNLNVLILRSN 644
NQ+ L +L + L +N
Sbjct: 380 TNQLKSVPDGIFDRLTSLQKIWLHTN 405
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 1/110 (0%)
Query: 152 LETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGXXXXXXXXXXXXXXXR 211
L+ LDL I++ +LS LS + L ++ L +F
Sbjct: 55 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 114
Query: 212 GELLVSIGNLHSLKELDLSANILSS-ELPTSIGNLSSLKKLDLSQNRFFS 260
IG+L +LKEL+++ N++ S +LP NL++L+ LDLS N+ S
Sbjct: 115 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 63/148 (42%), Gaps = 25/148 (16%)
Query: 285 LHLSFNKFSGEFPWSTRN------------------FSSLKILDLRSCSFWGKVPHSIGN 326
+ L+F K P+ST+N F L++LDL C + +
Sbjct: 16 MELNFYKIPDNLPFSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 75
Query: 327 FTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIP-SSLRN-----LTQLIVLSLSQN 380
+ L L LT N LG+ L SL+ L + +SL N L L L+++ N
Sbjct: 76 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 135
Query: 381 SYRGMIELDFLLTSLKNLEALVLSSNRL 408
+ +L ++L NLE L LSSN++
Sbjct: 136 LIQSF-KLPEYFSNLTNLEHLDLSSNKI 162
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 54/133 (40%), Gaps = 8/133 (6%)
Query: 536 LNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSH 595
L L L LSHN L L LG L VLD+ N L + L
Sbjct: 76 LPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 596 NLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRT 655
N + P L KLE L L NN +++ L L NL+ L+L+ N+ Y I K
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK---- 189
Query: 656 DCGFSKLHIIDLS 668
GF H++ +
Sbjct: 190 --GFFGSHLLPFA 200
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 1/110 (0%)
Query: 152 LETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGXXXXXXXXXXXXXXXR 211
L+ LDL I++ +LS LS + L ++ L +F
Sbjct: 56 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 115
Query: 212 GELLVSIGNLHSLKELDLSANILSS-ELPTSIGNLSSLKKLDLSQNRFFS 260
IG+L +LKEL+++ N++ S +LP NL++L+ LDLS N+ S
Sbjct: 116 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 71/164 (43%), Gaps = 26/164 (15%)
Query: 270 GSLKVLDLSRNGLFE-LHLSFNKFSGEFPWSTRN------------------FSSLKILD 310
GS +++ N ++ + L+F K P+ST+N F L++LD
Sbjct: 1 GSEPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSWNPLRHLGSYSFFSFPELQVLD 60
Query: 311 LRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIP-SSLRN- 368
L C + + + L L LT N LG+ L SL+ L + +SL N
Sbjct: 61 LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF 120
Query: 369 ----LTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRL 408
L L L+++ N + +L ++L NLE L LSSN++
Sbjct: 121 PIGHLKTLKELNVAHNLIQSF-KLPEYFSNLTNLEHLDLSSNKI 163
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 1/110 (0%)
Query: 152 LETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGXXXXXXXXXXXXXXXR 211
L+ LDL I++ +LS LS + L ++ L +F
Sbjct: 55 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 114
Query: 212 GELLVSIGNLHSLKELDLSANILSS-ELPTSIGNLSSLKKLDLSQNRFFS 260
IG+L +LKEL+++ N++ S +LP NL++L+ LDLS N+ S
Sbjct: 115 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 7/130 (5%)
Query: 285 LHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDL 344
L LSFN +S +F L++LDL C + + + L L LT N
Sbjct: 34 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 93
Query: 345 LGSIGNLRSLKALHVGQIP-SSLRN-----LTQLIVLSLSQNSYRGMIELDFLLTSLKNL 398
LG+ L SL+ L + +SL N L L L+++ N + +L ++L NL
Sbjct: 94 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF-KLPEYFSNLTNL 152
Query: 399 EALVLSSNRL 408
E L LSSN++
Sbjct: 153 EHLDLSSNKI 162
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 1/110 (0%)
Query: 152 LETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGXXXXXXXXXXXXXXXR 211
L+ LDL I++ +LS LS + L ++ L +F
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113
Query: 212 GELLVSIGNLHSLKELDLSANILSS-ELPTSIGNLSSLKKLDLSQNRFFS 260
IG+L +LKEL+++ N++ S +LP NL++L+ LDLS N+ S
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 7/130 (5%)
Query: 285 LHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDL 344
L LSFN +S +F L++LDL C + + + L L LT N
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 345 LGSIGNLRSLKALHVGQIP-SSLRN-----LTQLIVLSLSQNSYRGMIELDFLLTSLKNL 398
LG+ L SL+ L + +SL N L L L+++ N + +L ++L NL
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF-KLPEYFSNLTNL 151
Query: 399 EALVLSSNRL 408
E L LSSN++
Sbjct: 152 EHLDLSSNKI 161
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 1/110 (0%)
Query: 152 LETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGXXXXXXXXXXXXXXXR 211
L+ LDL I++ +LS LS + L ++ L +F
Sbjct: 56 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLA 115
Query: 212 GELLVSIGNLHSLKELDLSANILSS-ELPTSIGNLSSLKKLDLSQNRFFS 260
IG+L +LKEL+++ N++ S +LP NL++L+ LDLS N+ S
Sbjct: 116 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 7/130 (5%)
Query: 285 LHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDL 344
L LSFN +S +F L++LDL C + + + L L LT N
Sbjct: 35 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 94
Query: 345 LGSIGNLRSLKALHVGQIP-SSLRN-----LTQLIVLSLSQNSYRGMIELDFLLTSLKNL 398
LG+ L SL+ L + +SL N L L L+++ N + +L ++L NL
Sbjct: 95 LGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSF-KLPEYFSNLTNL 153
Query: 399 EALVLSSNRL 408
E L LSSN++
Sbjct: 154 EHLDLSSNKI 163
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Query: 152 LETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGXXXXXXXXXXXXXXXR 211
L+ LDL I++ +LS LS + L ++ L +F
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113
Query: 212 GELLVSIGNLHSLKELDLSANILSS-ELPTSIGNLSSLKKLDLSQNR 257
IG+L +LKEL+++ N++ S +LP NL++L+ LDLS N+
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 7/130 (5%)
Query: 285 LHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDL 344
L LSFN +S +F L++LDL C + + + L L LT N
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 345 LGSIGNLRSLKALHVGQIP-SSLRN-----LTQLIVLSLSQNSYRGMIELDFLLTSLKNL 398
LG+ L SL+ L + +SL N L L L+++ N + +L ++L NL
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF-KLPEYFSNLTNL 151
Query: 399 EALVLSSNRL 408
E L LSSN++
Sbjct: 152 EHLDLSSNKI 161
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 221 LHSLKELDLSANILSSE-LPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSR 279
L SL+ L ++ N LP L +L LDLSQ + PT+ +L SL+VL+++
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503
Query: 280 NGL 282
N L
Sbjct: 504 NQL 506
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 40/86 (46%), Gaps = 13/86 (15%)
Query: 224 LKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLF 283
L L L+ N L+ ELP I NLS+L+ LDLS NR S LP +G+ LK
Sbjct: 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYF------ 300
Query: 284 ELHLSFNKFSGEFPWSTRNFSSLKIL 309
F+ PW N +L+ L
Sbjct: 301 -----FDNMVTTLPWEFGNLCNLQFL 321
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 13/124 (10%)
Query: 268 NLGSLKVLDLSRN-----GLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPH 322
+L +L++ ++S N L L+L+ N + E P +N S+L++LDL S + +P
Sbjct: 230 DLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDL-SHNRLTSLPA 287
Query: 323 SIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSY 382
+G+ +L+ Y F+N L GNL +L+ L V P L + + L++ S
Sbjct: 288 ELGSCFQLKYFYF-FDNMVTTLPWEFGNLCNLQFLGVEGNP-----LEKQFLKILTEKSV 341
Query: 383 RGMI 386
G+I
Sbjct: 342 TGLI 345
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 562 DELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQ 621
D L L L GN+ +P S L V+DLSHN +P L +C +L++ +N
Sbjct: 247 DFLTRLYLNGNSL-TELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNM 304
Query: 622 ISDTFPSWLGTLPNLNVLILRSN 644
++ T P G L NL L + N
Sbjct: 305 VT-TLPWEFGNLCNLQFLGVEGN 326
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 30/44 (68%), Gaps = 3/44 (6%)
Query: 515 TILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLG 558
T LYL + NSLT E+P+ I NL+ L+ L LSHN L+ LP LG
Sbjct: 250 TRLYL-NGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELG 290
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 69/164 (42%), Gaps = 34/164 (20%)
Query: 224 LKELDLSANILSSELPTSIGN------------------------LSSLKKLDLSQNRFF 259
L+EL+L+ NI+S+ P + N LS+L KLD+S+N+
Sbjct: 58 LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV 117
Query: 260 SELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGK 319
L +L +LK L++ N L +++S FSG +SL+ L L C+
Sbjct: 118 ILLDYMFQDLYNLKSLEVGDNDL--VYISHRAFSG--------LNSLEQLTLEKCNLTSI 167
Query: 320 VPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIP 363
++ + L +L L N + S L LK L + P
Sbjct: 168 PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP 211
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 71/290 (24%), Positives = 121/290 (41%), Gaps = 44/290 (15%)
Query: 151 NLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGXXXXXXXXXXXXXXX 210
+LE L+L + + + P NL +L + LR+ L+ L F
Sbjct: 57 HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI 116
Query: 211 RGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLG 270
L +L++LK L++ N L + L+SL++L L + S ++ +L
Sbjct: 117 VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLH 176
Query: 271 SLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSF---------WG--- 318
L VL L HL+ N +S + LK+L++ + +G
Sbjct: 177 GLIVLRLR-------HLNINAIRD---YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL 226
Query: 319 -----------KVPH-SIGNFTRLQLLYLTFNNFS---GDLLGSIGNLRSLKALHVGQI- 362
VP+ ++ + L+ L L++N S G +L + L+ ++ L GQ+
Sbjct: 227 TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQ-LVGGQLA 285
Query: 363 ---PSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLS 409
P + R L L VL++S N + E F S+ NLE L+L SN L+
Sbjct: 286 VVEPYAFRGLNYLRVLNVSGNQLTTLEESVF--HSVGNLETLILDSNPLA 333
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 79/185 (42%), Gaps = 19/185 (10%)
Query: 229 LSANILSSELPTSIGNLSSLKKLDLSQN-RFFSELPTSIGNLGSLKVLDLSRNGLFELHL 287
L +N+L+ + L+ L++LDLS N + S P + LG L L L R GL EL
Sbjct: 63 LHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG- 121
Query: 288 SFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGS 347
P R ++L+ L L+ + + + L L+L N S +
Sbjct: 122 ---------PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA 172
Query: 348 IGNLRSLKA--LHVGQI----PSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEAL 401
L SL LH ++ P + R+L +L+ L L N+ + L L+ L+ L
Sbjct: 173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT--EALAPLRALQYL 230
Query: 402 VLSSN 406
L+ N
Sbjct: 231 RLNDN 235
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 59/155 (38%), Gaps = 15/155 (9%)
Query: 224 LKELDLSANI-LSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGL 282
L++LDLS N L S P + L L L L + P L +L+ L L N L
Sbjct: 82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 141
Query: 283 --------------FELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFT 328
L L N+ S + R SL L L PH+ +
Sbjct: 142 QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201
Query: 329 RLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIP 363
RL LYL NN S ++ LR+L+ L + P
Sbjct: 202 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 53/141 (37%), Gaps = 7/141 (4%)
Query: 149 LSNLETLDLGD-ASIRSTIPHNLANLSSLSFVSLRNC---ELEGRILSSFGXXXXXXXXX 204
L+ LE LDL D A +RS P L L + L C EL +
Sbjct: 79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 138
Query: 205 XXXXXXRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPT 264
+ +GNL L L N +SS + L SL +L L QNR P
Sbjct: 139 NALQALPDDTFRDLGNL---THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 195
Query: 265 SIGNLGSLKVLDLSRNGLFEL 285
+ +LG L L L N L L
Sbjct: 196 AFRDLGRLMTLYLFANNLSAL 216
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 79/185 (42%), Gaps = 19/185 (10%)
Query: 229 LSANILSSELPTSIGNLSSLKKLDLSQN-RFFSELPTSIGNLGSLKVLDLSRNGLFELHL 287
L +N+L+ + L+ L++LDLS N + S P + LG L L L R GL EL
Sbjct: 62 LHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG- 120
Query: 288 SFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGS 347
P R ++L+ L L+ + + + L L+L N S +
Sbjct: 121 ---------PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA 171
Query: 348 IGNLRSLKA--LHVGQI----PSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEAL 401
L SL LH ++ P + R+L +L+ L L N+ + L L+ L+ L
Sbjct: 172 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT--EALAPLRALQYL 229
Query: 402 VLSSN 406
L+ N
Sbjct: 230 RLNDN 234
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 59/155 (38%), Gaps = 15/155 (9%)
Query: 224 LKELDLSANI-LSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGL 282
L++LDLS N L S P + L L L L + P L +L+ L L N L
Sbjct: 81 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 140
Query: 283 --------------FELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFT 328
L L N+ S + R SL L L PH+ +
Sbjct: 141 QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 200
Query: 329 RLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIP 363
RL LYL NN S ++ LR+L+ L + P
Sbjct: 201 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 235
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 53/141 (37%), Gaps = 7/141 (4%)
Query: 149 LSNLETLDLGD-ASIRSTIPHNLANLSSLSFVSLRNC---ELEGRILSSFGXXXXXXXXX 204
L+ LE LDL D A +RS P L L + L C EL +
Sbjct: 78 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 137
Query: 205 XXXXXXRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPT 264
+ +GNL L L N +SS + L SL +L L QNR P
Sbjct: 138 NALQALPDDTFRDLGNL---THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 194
Query: 265 SIGNLGSLKVLDLSRNGLFEL 285
+ +LG L L L N L L
Sbjct: 195 AFRDLGRLMTLYLFANNLSAL 215
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 55/131 (41%), Gaps = 26/131 (19%)
Query: 147 EKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGXXXXXXXXXXX 206
+ L NL++L L IRS +P ++ANL +L + +RN L S+ G
Sbjct: 180 QGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPL-----SALGP---------- 223
Query: 207 XXXXRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSI 266
+I +L L+ELDL P G + LK+L L LP I
Sbjct: 224 ----------AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDI 273
Query: 267 GNLGSLKVLDL 277
L L+ LDL
Sbjct: 274 HRLTQLEKLDL 284
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 56/131 (42%), Gaps = 21/131 (16%)
Query: 214 LLVSIGNLHSLKELDLSANILSSELPTSIGN---------LSSLKKLDLSQNRFFSELPT 264
L SI +L+ L+EL + A +ELP + + L +L+ L L S LP
Sbjct: 142 LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LPA 200
Query: 265 SIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSI 324
SI NL +LK L + + L L + + + L+ LDLR C+ P
Sbjct: 201 SIANLQNLKSLKIRNSPLSALGPAIH-----------HLPKLEELDLRGCTALRNYPPIF 249
Query: 325 GNFTRLQLLYL 335
G L+ L L
Sbjct: 250 GGRAPLKRLIL 260
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 66/152 (43%), Gaps = 26/152 (17%)
Query: 226 ELDLSANILSSELPTSIGNLSSLKKLDLSQNRF--FSELPTSIGNLGSLKVLDLSRNGLF 283
LD S N+L+ + + G+L+ L+ L L N+ S++ + SL+ LD+S+N
Sbjct: 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS-- 385
Query: 284 ELHLSFNKFSGEFPWS----TRNFSS--------------LKILDLRSCSFWGKVPHSIG 325
+S+++ G+ W+ + N SS +K+LDL S +P +
Sbjct: 386 ---VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKI-KSIPKQVV 441
Query: 326 NFTRLQLLYLTFNNFSGDLLGSIGNLRSLKAL 357
LQ L + N G L SL+ +
Sbjct: 442 KLEALQELNVASNQLKSVPDGIFDRLTSLQKI 473
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 107/462 (23%), Positives = 187/462 (40%), Gaps = 77/462 (16%)
Query: 251 LDLSQNRFFSELPTS-IGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPW----------- 298
L++SQN + SEL TS I +L L++L +S N + L +S KF+ E +
Sbjct: 26 LNISQN-YISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKI 84
Query: 299 STRNFSSLKILDLRSCSFWG-KVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKAL 357
S +LK LDL +F + GN ++L+ L L+ + + I +L K L
Sbjct: 85 SCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVL 144
Query: 358 HV-------GQIPSSLRNL-TQLIVLSLSQNSYRGMIELDFLLTSLKNLE----ALVLSS 405
V + P L++ T+ + + N I LD + ++ NLE VL
Sbjct: 145 LVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFI-LDVSVKTVANLELSNIKCVLED 203
Query: 406 NR----LSLLTKATSNTTSQKFRYVGLRSCNLT--EFPNFLKNQHHLVI--LDLSANRIH 457
N+ LS+L K +N K + L + T F L+ H + +S ++
Sbjct: 204 NKCSYFLSILAKLQTNP---KLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQ 260
Query: 458 GKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPA-------------------------VL 492
G++ D S L AL++ H +++ P +
Sbjct: 261 GQLDFRDFDYSGTSLKALSI-HQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC 319
Query: 493 PGKT-----FDFSSNNLQGPL-----PVPPPETILYLVSNNSLTGEIPSWICNLNTLKNL 542
P K DFS+N L + + ET++ ++ +I + +L+ L
Sbjct: 320 PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQL 379
Query: 543 VLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRI 602
+S NS+S + +++ L L++ N TI R+ V+DL N + I
Sbjct: 380 DISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIKS-I 436
Query: 603 PRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSN 644
P+ +V L+ L++ +NQ+ L +L + L +N
Sbjct: 437 PKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 8/103 (7%)
Query: 544 LSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIP 603
+S + L G LP L L+L+ N G P+ F S + + L N +
Sbjct: 44 ISSDGLFGRLPH--------LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISN 95
Query: 604 RSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTF 646
+ + +L+ L+L +NQIS P L +L L L SN F
Sbjct: 96 KMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%)
Query: 224 LKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLF 283
L+EL+LS N L P S L+SL+KL L + + + +L SL+ L+LS N L
Sbjct: 180 LEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLM 239
Query: 284 EL 285
L
Sbjct: 240 SL 241
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%)
Query: 224 LKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLF 283
L+EL+LS N L P S L+SL+KL L + + + +L SL+ L+LS N L
Sbjct: 180 LEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLM 239
Query: 284 EL 285
L
Sbjct: 240 SL 241
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
Query: 578 IPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLN 637
+PD + + V++L+HN + + S+L LD+G N IS P LP L
Sbjct: 19 VPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLK 76
Query: 638 VLILRSNTFYGIIKEPRTDC-GFSKLHII-----DLSNNRFTGK 675
VL L+ N + + C ++LH++ + NN F +
Sbjct: 77 VLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 520 VSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIP 579
V N+++ P L LK L L HN LS L + F L L L N+
Sbjct: 56 VGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA-FCTNLTELHLMSNSIQKIKN 114
Query: 580 DTFIKESRLGVIDLSHN 596
+ F+K+ L +DLSHN
Sbjct: 115 NPFVKQKNLITLDLSHN 131
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 67/153 (43%), Gaps = 10/153 (6%)
Query: 239 PTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPW 298
P+ L +L LDLS N + + L L++LDL N L L N G +
Sbjct: 473 PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHAN--PGGPIY 530
Query: 299 STRNFSSLKILDLRSCSFWGKVPHSI-GNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKAL 357
+ S L IL+L S F ++P + + L+++ L NN + N SLK+L
Sbjct: 531 FLKGLSHLHILNLESNGF-DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSL 589
Query: 358 HVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDF 390
++ +NL + + ++R + ELD
Sbjct: 590 NLQ------KNLITSVEKKVFGPAFRNLTELDM 616
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
Query: 578 IPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLN 637
+PD + + V++L+HN + + S+L LD+G N IS P LP L
Sbjct: 29 VPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLK 86
Query: 638 VLILRSNTFYGIIKEPRTDC-GFSKLHII-----DLSNNRFTGK 675
VL L+ N + + C ++LH++ + NN F +
Sbjct: 87 VLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 130
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 520 VSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIP 579
V N+++ P L LK L L HN LS L + F L L L N+
Sbjct: 66 VGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA-FCTNLTELHLMSNSIQKIKN 124
Query: 580 DTFIKESRLGVIDLSHN 596
+ F+K+ L +DLSHN
Sbjct: 125 NPFVKQKNLITLDLSHN 141
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
Query: 578 IPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLN 637
+PD + + V++L+HN + + S+L LD+G N IS P LP L
Sbjct: 24 VPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLK 81
Query: 638 VLILRSNTFYGIIKEPRTDC-GFSKLHII-----DLSNNRFTGK 675
VL L+ N + + C ++LH++ + NN F +
Sbjct: 82 VLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 125
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 520 VSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIP 579
V N+++ P L LK L L HN LS L + F L L L N+
Sbjct: 61 VGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA-FCTNLTELHLMSNSIQKIKN 119
Query: 580 DTFIKESRLGVIDLSHN 596
+ F+K+ L +DLSHN
Sbjct: 120 NPFVKQKNLITLDLSHN 136
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 80/189 (42%), Gaps = 20/189 (10%)
Query: 225 KELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSI-GNLGSLKVLDLSRNGLF 283
K+LDL +N LSS + L+ L+ L L+ N+ + LP I L +L+ L ++ N L
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKLQ 98
Query: 284 ELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGD 343
L + G F +L L L P + T+L L L +N
Sbjct: 99 ALPI------GVFD----QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL 148
Query: 344 LLGSIGNLRSLKAL-----HVGQIPS-SLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKN 397
G L SLK L + ++P + LT+L L L N + + E F SL+
Sbjct: 149 PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAF--DSLEK 206
Query: 398 LEALVLSSN 406
L+ L L N
Sbjct: 207 LKMLQLQEN 215
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 65/159 (40%), Gaps = 26/159 (16%)
Query: 347 SIGNLRSLKALHVGQIPSSL-------RNLTQLIVLSLSQN--------SYRGMIELDFL 391
S L+ L+ L V Q L R L+ LI+L L N ++ G+ L+ L
Sbjct: 49 SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108
Query: 392 LTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEF--PNFLKNQHHLVIL 449
+ NL+ VLS N LT + LR N+ + +F N +L
Sbjct: 109 TLTQCNLDGAVLSGNFFKPLT---------SLEMLVLRDNNIKKIQPASFFLNMRRFHVL 159
Query: 450 DLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQH 488
DL+ N++ + LL+ ++ L LS L +++
Sbjct: 160 DLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEY 198
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 224 LKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLF 283
+KELDLS N LS + + L+ L+LS N + L + +L +L+ LDL+ N +
Sbjct: 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--DLESLSTLRTLDLNNNYVQ 93
Query: 284 EL 285
EL
Sbjct: 94 EL 95
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 28/61 (45%)
Query: 591 IDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGII 650
I L N + P + KL +DL NNQIS+ P L +LN L+L N +
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELP 96
Query: 651 K 651
K
Sbjct: 97 K 97
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 15/115 (13%)
Query: 606 LVNCS------KLEFLDLGNNQISDTF---PSWLGTLPNLNVLILRSNTFYGIIKEPRTD 656
LV CS LEFLDL N + + + + G P+L L+L N + K
Sbjct: 324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL 383
Query: 657 CGFSKLHIIDLSNNRFTGKLPSKSFLCW-DAMKIVN--TTELRYLQDVIPPYGQV 708
L +D+S N F P W + M+ +N +T +R ++ IP +V
Sbjct: 384 LTLKNLTSLDISRNTFH---PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEV 435
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 108/452 (23%), Positives = 180/452 (39%), Gaps = 83/452 (18%)
Query: 211 RGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSI-GNL 269
G+ S+G SL+ LDLS N LSS + G LSSLK L+L N + + TS+ NL
Sbjct: 66 EGDAFYSLG---SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122
Query: 270 GSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTR 329
+L+ L + F + F+G +SL L++++ S S+ +
Sbjct: 123 TNLQTLRIGNVETFS-EIRRIDFAG--------LTSLNELEIKALSLRNYQSQSLKSIRD 173
Query: 330 LQLLYLTFNNFS------GDLLGSIGNLR---------SLKALHVGQIPSSLRNLTQLIV 374
+ L L + + D+L S+ L L V ++ S ++ L
Sbjct: 174 IHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS 233
Query: 375 LSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQ--KFRYVGLRSCN 432
+ L+ S+ +++L + L +E + N L + S+ S+ K V +R +
Sbjct: 234 V-LTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLH 292
Query: 433 LTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVL 492
+ +F F +L+ RI + K L P F QH L
Sbjct: 293 IPQFYLFYDLSTVYSLLE-KVKRITVENSKVFLVP---------------CSFSQHLKSL 336
Query: 493 PGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGL 552
+ D S N + + + N++ G PS L+ LVLS N L +
Sbjct: 337 --EFLDLSENLM-----------VEEYLKNSACKGAWPS-------LQTLVLSQNHLRSM 376
Query: 553 LPQCLGNF---SDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHN---LFQGRIPRSL 606
Q G L LD+ N F +PD+ ++ ++LS + + IP++
Sbjct: 377 --QKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQT- 432
Query: 607 VNCSKLEFLDLGNNQISDTFPSWLGTLPNLNV 638
LE LD+ NN + D+F +L L L +
Sbjct: 433 -----LEVLDVSNNNL-DSFSLFLPRLQELYI 458
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 28/61 (45%)
Query: 591 IDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGII 650
I L N + P + KL +DL NNQIS+ P L +LN L+L N +
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELP 96
Query: 651 K 651
K
Sbjct: 97 K 97
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 15/115 (13%)
Query: 606 LVNCS------KLEFLDLGNNQISDTF---PSWLGTLPNLNVLILRSNTFYGIIKEPRTD 656
LV CS LEFLDL N + + + + G P+L L+L N + K
Sbjct: 350 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL 409
Query: 657 CGFSKLHIIDLSNNRFTGKLPSKSFLCW-DAMKIVN--TTELRYLQDVIPPYGQV 708
L +D+S N F P W + M+ +N +T +R ++ IP +V
Sbjct: 410 LTLKNLTSLDISRNTFH---PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEV 461
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 108/452 (23%), Positives = 180/452 (39%), Gaps = 83/452 (18%)
Query: 211 RGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSI-GNL 269
G+ S+G SL+ LDLS N LSS + G LSSLK L+L N + + TS+ NL
Sbjct: 92 EGDAFYSLG---SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 148
Query: 270 GSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTR 329
+L+ L + F + F+G +SL L++++ S S+ +
Sbjct: 149 TNLQTLRIGNVETFS-EIRRIDFAG--------LTSLNELEIKALSLRNYQSQSLKSIRD 199
Query: 330 LQLLYLTFNNFS------GDLLGSIGNLR---------SLKALHVGQIPSSLRNLTQLIV 374
+ L L + + D+L S+ L L V ++ S ++ L
Sbjct: 200 IHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS 259
Query: 375 LSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQ--KFRYVGLRSCN 432
+ L+ S+ +++L + L +E + N L + S+ S+ K V +R +
Sbjct: 260 V-LTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLH 318
Query: 433 LTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVL 492
+ +F F +L+ RI + K L P F QH L
Sbjct: 319 IPQFYLFYDLSTVYSLLE-KVKRITVENSKVFLVP---------------CSFSQHLKSL 362
Query: 493 PGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGL 552
+ D S N + + + N++ G PS L+ LVLS N L +
Sbjct: 363 --EFLDLSENLM-----------VEEYLKNSACKGAWPS-------LQTLVLSQNHLRSM 402
Query: 553 LPQCLGNF---SDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHN---LFQGRIPRSL 606
Q G L LD+ N F +PD+ ++ ++LS + + IP++
Sbjct: 403 --QKTGEILLTLKNLTSLDISRNT-FHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQT- 458
Query: 607 VNCSKLEFLDLGNNQISDTFPSWLGTLPNLNV 638
LE LD+ NN + D+F +L L L +
Sbjct: 459 -----LEVLDVSNNNL-DSFSLFLPRLQELYI 484
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 224 LKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLF 283
+KELDLS N LS + + L+ L+LS N + L + +L +L+ LDL+ N +
Sbjct: 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--DLESLSTLRTLDLNNNYVQ 93
Query: 284 EL 285
EL
Sbjct: 94 EL 95
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 14/137 (10%)
Query: 426 VGLRSC-NLTEFPNFLKNQHHLVILDLSANR-IHGKIPK--W--LLD-PSMQYLNALNLS 478
V + +C NLT+ P FLK +++++ NR I G+ K W L D P + + + +
Sbjct: 254 VEVYNCPNLTKLPTFLKALPEXQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIG 313
Query: 479 HNLLTRFDQHPAVLPGKT---FDFSSNNLQGPLPVPPPETILYL--VSNNSLTGEIPSWI 533
+N L F ++ K + N L+G LP E L ++ N +T EIP+
Sbjct: 314 YNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT-EIPANF 372
Query: 534 CNL-NTLKNLVLSHNSL 549
C ++NL +HN L
Sbjct: 373 CGFTEQVENLSFAHNKL 389
>pdb|3NNF|A Chain A, Halogenase Domain From Cura Module With Fe, Chloride, And
Alpha- Ketoglutarate
pdb|3NNL|A Chain A, Halogenase Domain From Cura Module (Crystal Form Iii)
pdb|3NNL|B Chain B, Halogenase Domain From Cura Module (Crystal Form Iii)
pdb|3NNM|A Chain A, Halogenase Domain From Cura Module (Crystal Form Iv)
pdb|3NNM|B Chain B, Halogenase Domain From Cura Module (Crystal Form Iv)
Length = 344
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 53/129 (41%), Gaps = 17/129 (13%)
Query: 533 ICNLNTLKNLVLSHNSLSGLLPQCLG-NFSDELAVLDLQGNNFFGT---IP-DTFIKESR 587
+ N T KNL++ HN+L + P G + + FG IP D KE R
Sbjct: 110 LLNYITGKNLMIMHNALFSVEPNHKGLPWHVGVGSFSFTKTEDFGASIWIPLDKITKEHR 169
Query: 588 LGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFY 647
G+ +S +F G+ S+ + L L NN W + +LN + +NT Y
Sbjct: 170 GGMQYVSTKIFPGQFYYSVFD------LHLKNN------IKWDESQGDLNEYVANANTIY 217
Query: 648 GIIKEPRTD 656
I E D
Sbjct: 218 NKITEDVID 226
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 71/183 (38%), Gaps = 19/183 (10%)
Query: 222 HSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGN---------LGSL 272
+ L +LD+S N L + L + ++L ++D+S N +EL + L
Sbjct: 116 NKLTKLDVSQNPLLTYLNCA---RNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQL 172
Query: 273 KVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKI-----LDLRSCSFWGKVPHSIGNF 327
LD S N + EL +S NK T N + L + L CS +
Sbjct: 173 TTLDCSFNKITELDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEIDVTPL 232
Query: 328 TRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIE 387
T+L + N + + ++ L +L + + L + TQLI R + E
Sbjct: 233 TQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAE--GCRKIKE 290
Query: 388 LDF 390
LD
Sbjct: 291 LDV 293
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 102/231 (44%), Gaps = 36/231 (15%)
Query: 217 SIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLD 276
++ L SL++L+ S+N ++ P + NL++L++LD+S N+ + I L L L+
Sbjct: 146 ALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKV-----SDISVLAKLTNLE 198
Query: 277 LSRNGLFELHLSFNKFSGEFPWSTRNFSSLKIL-DLRSCSFWGKVPHSIG---NFTRLQL 332
L + N+ S P L IL +L S G IG + T L
Sbjct: 199 -------SLIATNNQISDITP--------LGILTNLDELSLNGNQLKDIGTLASLTNLTD 243
Query: 333 LYLTFNNFSGDLLGSIGNLRSLKALHVG--QIP--SSLRNLTQLIVLSLSQNSYRGMIEL 388
L L N S L + L L L +G QI S L LT L L L++N +
Sbjct: 244 LDLANNQISN--LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP- 300
Query: 389 DFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNF 439
+++LKNL L L N +S ++ +S T Q+ + + +++ N
Sbjct: 301 ---ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANL 348
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 71/199 (35%), Gaps = 58/199 (29%)
Query: 606 LVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHII 665
L N + L L L NNQI+D P L L NLN L L SNT I G + L +
Sbjct: 103 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI----SALSGLTSLQQL 156
Query: 666 DLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSK 725
+ S+N+ T D + N T L L
Sbjct: 157 NFSSNQVT-----------DLKPLANLTTLERLD-------------------------- 179
Query: 726 GRMMTYNKIPDI--------LTGIILSSNRFDGVIPTSIANLKGXXXXXXXXXXXXGHIP 777
++ NK+ DI L +I ++N+ + P I G
Sbjct: 180 ---ISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG--- 233
Query: 778 SCLGNLTNLESLDLSNNRF 796
L +LTNL LDL+NN+
Sbjct: 234 -TLASLTNLTDLDLANNQI 251
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 48/112 (42%), Gaps = 13/112 (11%)
Query: 221 LHSLKELDLSANILSSELPTSI-GNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSR 279
L +L ELDLS N L S LP + L+ LK L L QN+ S L SL+ + L
Sbjct: 156 LTNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD 214
Query: 280 N-------GLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSI 324
N G+ L NK SG RN + D CS GK SI
Sbjct: 215 NPWDCTCPGIRYLSEWINKHSG----VVRNSAGSVAPDSAKCSGSGKPVRSI 262
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 10/133 (7%)
Query: 538 TLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNL 597
++ L SHNS++ + G + EL +L LQ NN T + L +DLS+N
Sbjct: 206 AVEELDASHNSINVVR----GPVNVELTILKLQHNNLTDTA--WLLNYPGLVEVDLSYNE 259
Query: 598 FQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDC 657
+ + V +LE L + NN++ + +P L VL L N ++ R
Sbjct: 260 LEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHN---HLLHVERNQP 315
Query: 658 GFSKLHIIDLSNN 670
F +L + L +N
Sbjct: 316 QFDRLENLYLDHN 328
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 224 LKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLF 283
L E+DLS N L + + L++L +S NR + L + +LKVLDLS N L
Sbjct: 250 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHL- 307
Query: 284 ELHLSFNK 291
LH+ N+
Sbjct: 308 -LHVERNQ 314
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 70/182 (38%), Gaps = 42/182 (23%)
Query: 530 PSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTF------- 582
P N+ L LVL N LS L P+ + + + +L L + NN DTF
Sbjct: 110 PHVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 168
Query: 583 ---IKESRLGVIDLS--HNLFQGRIPRSLVNC-------------------------SKL 612
+ +RL +DLS +LF + +L++ +L
Sbjct: 169 NLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVEL 228
Query: 613 EFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRF 672
L L +N ++DT +WL P L + L N I+ P +L + +SNNR
Sbjct: 229 TILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV--KMQRLERLYISNNRL 284
Query: 673 TG 674
Sbjct: 285 VA 286
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 58/133 (43%), Gaps = 10/133 (7%)
Query: 538 TLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNL 597
++ L SHNS++ + G + EL +L LQ NN T + L +DLS+N
Sbjct: 212 AVEELDASHNSINVVR----GPVNVELTILKLQHNNLTDTA--WLLNYPGLVEVDLSYNE 265
Query: 598 FQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDC 657
+ + V +LE L + NN++ + +P L VL L N + R
Sbjct: 266 LEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHV---ERNQP 321
Query: 658 GFSKLHIIDLSNN 670
F +L + L +N
Sbjct: 322 QFDRLENLYLDHN 334
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 14/108 (12%)
Query: 446 LVILDLSANRIHGKIPKWLLDP--SMQYLNALNLSHNLLTRFDQHPAVLPG-KTFDFSSN 502
LV +DLS N ++ K + P MQ L L +S+N L + + +P K D S N
Sbjct: 256 LVEVDLSYN----ELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN 311
Query: 503 NL---QGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHN 547
+L + P LYL N+ +T ++ + +TLKNL LSHN
Sbjct: 312 HLLHVERNQPQFDRLENLYLDHNSIVTLKLSTH----HTLKNLTLSHN 355
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 65/187 (34%), Gaps = 39/187 (20%)
Query: 216 VSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSEL-PTSIGNLGSLKV 274
S + +L L L +N L+ + L+ L++LDLS N + PT+ LG L
Sbjct: 49 ASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHT 108
Query: 275 LDLSRNGLFEL--------------------------------------HLSFNKFSGEF 296
L L R GL EL L N+
Sbjct: 109 LHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVP 168
Query: 297 PWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKA 356
+ R SL L L PH+ + RL LYL NN S + LRSL+
Sbjct: 169 EHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQY 228
Query: 357 LHVGQIP 363
L + P
Sbjct: 229 LRLNDNP 235
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 101/231 (43%), Gaps = 36/231 (15%)
Query: 217 SIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLD 276
++ L SL++L S+N ++ P + NL++L++LD+S N+ + I L L L+
Sbjct: 146 ALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKV-----SDISVLAKLTNLE 198
Query: 277 LSRNGLFELHLSFNKFSGEFPWSTRNFSSLKIL-DLRSCSFWGKVPHSIG---NFTRLQL 332
L + N+ S P L IL +L S G IG + T L
Sbjct: 199 -------SLIATNNQISDITP--------LGILTNLDELSLNGNQLKDIGTLASLTNLTD 243
Query: 333 LYLTFNNFSGDLLGSIGNLRSLKALHVG--QIP--SSLRNLTQLIVLSLSQNSYRGMIEL 388
L L N S L + L L L +G QI S L LT L L L++N +
Sbjct: 244 LDLANNQISN--LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP- 300
Query: 389 DFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNF 439
+++LKNL L L N +S ++ +S T Q+ + + +++ N
Sbjct: 301 ---ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANL 348
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 68 LVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGA 104
+ L L+L+FNDF+ + E NL +L++L LS A
Sbjct: 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA 156
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 15/93 (16%)
Query: 612 LEFLDLGNNQISDTF---PSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLS 668
LE+LDL N + + + + P+L LILR N + K T L ID+S
Sbjct: 336 LEYLDLSENLMVEEYLKNSACEDAWPSLQTLILRQNHLASLEKTGETLLTLKNLTNIDIS 395
Query: 669 NNRF-----TGKLPSKSFLCWDAMKIVNTTELR 696
N F T + P K MK +N + R
Sbjct: 396 KNSFHSMPETCQWPEK-------MKYLNLSSTR 421
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 101/231 (43%), Gaps = 36/231 (15%)
Query: 217 SIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLD 276
++ L SL++L S+N ++ P + NL++L++LD+S N+ + I L L L+
Sbjct: 146 ALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKV-----SDISVLAKLTNLE 198
Query: 277 LSRNGLFELHLSFNKFSGEFPWSTRNFSSLKIL-DLRSCSFWGKVPHSIG---NFTRLQL 332
L + N+ S P L IL +L S G IG + T L
Sbjct: 199 -------SLIATNNQISDITP--------LGILTNLDELSLNGNQLKDIGTLASLTNLTD 243
Query: 333 LYLTFNNFSGDLLGSIGNLRSLKALHVG--QIP--SSLRNLTQLIVLSLSQNSYRGMIEL 388
L L N S L + L L L +G QI S L LT L L L++N +
Sbjct: 244 LDLANNQISN--LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP- 300
Query: 389 DFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNF 439
+++LKNL L L N +S ++ +S T Q+ + + +++ N
Sbjct: 301 ---ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDVSSLANL 348
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 104/248 (41%), Gaps = 45/248 (18%)
Query: 508 LPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVL 567
LP PP + S NSLT E+P +LK+L++ +N+L L SD +L
Sbjct: 86 LPELPPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLKAL--------SDLPPLL 133
Query: 568 DLQG--NNFFGTIPDTFIKESRLGVIDLSHNLFQG--RIPRSLVNCSKLEFLDLGNNQIS 623
+ G NN +P+ S L +ID+ +N + +P SL EF+ GNNQ+
Sbjct: 134 EYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLKKLPDLPPSL------EFIAAGNNQLE 186
Query: 624 DTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLC 683
+ L LP L + +N+ + D S I+ + N +LP L
Sbjct: 187 EL--PELQNLPFLTAIYADNNSLKKL-----PDLPLSLESIV--AGNNILEELPELQNLP 237
Query: 684 WDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIIL 743
+ + L+ L D+ P S + ++ D LT ++P LT + +
Sbjct: 238 FLTTIYADNNLLKTLPDLPP-----SLEALNVRDNYLT--------DLPELPQSLTFLDV 284
Query: 744 SSNRFDGV 751
S N F G+
Sbjct: 285 SENIFSGL 292
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 78/190 (41%), Gaps = 33/190 (17%)
Query: 323 SIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHV-----GQIPS-SLRNLTQLIVLS 376
S + L++L L+ N+ +G+ L +L L + IP+ + L++L L
Sbjct: 83 SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142
Query: 377 LSQNSYRGMIELDF-LLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTE 435
L N + F + SL+ L+ L RLS +++ S RY+ L CNL E
Sbjct: 143 LRNNPIESIPSYAFNRIPSLRRLDLGELK--RLSYISEGAFEGLS-NLRYLNLAMCNLRE 199
Query: 436 FPNFLKNQHHLVILDLSANRIHGKIPK-----------WLLDPSMQYLN----------- 473
PN L L LDLS N + P W++ +Q +
Sbjct: 200 IPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLV 258
Query: 474 ALNLSHNLLT 483
+NL+HN LT
Sbjct: 259 EINLAHNNLT 268
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 76/193 (39%), Gaps = 31/193 (16%)
Query: 221 LHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRN 280
L L+ L LS N L ELP + +L++L + +N + L + V++L N
Sbjct: 99 LVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN 155
Query: 281 GLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSI------GN-------- 326
L + F G + S ++I D + +P S+ GN
Sbjct: 156 PLKSSGIENGAFQG-----MKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAA 210
Query: 327 ----FTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVG-----QIPSSLRNLTQLIVLSL 377
L L L+FN+ S GS+ N L+ LH+ ++P L + + V+ L
Sbjct: 211 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYL 270
Query: 378 SQNSYRGMIELDF 390
N+ + DF
Sbjct: 271 HNNNISAIGSNDF 283
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 76/193 (39%), Gaps = 31/193 (16%)
Query: 221 LHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRN 280
L L+ L LS N L ELP + +L++L + +N + L + V++L N
Sbjct: 99 LVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN 155
Query: 281 GLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSI------GN-------- 326
L + F G + S ++I D + +P S+ GN
Sbjct: 156 PLKSSGIENGAFQG-----MKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAA 210
Query: 327 ----FTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVG-----QIPSSLRNLTQLIVLSL 377
L L L+FN+ S GS+ N L+ LH+ ++P L + + V+ L
Sbjct: 211 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYL 270
Query: 378 SQNSYRGMIELDF 390
N+ + DF
Sbjct: 271 HNNNISAIGSNDF 283
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,038,361
Number of Sequences: 62578
Number of extensions: 882217
Number of successful extensions: 2715
Number of sequences better than 100.0: 108
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 1689
Number of HSP's gapped (non-prelim): 517
length of query: 798
length of database: 14,973,337
effective HSP length: 107
effective length of query: 691
effective length of database: 8,277,491
effective search space: 5719746281
effective search space used: 5719746281
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)