Query 038037
Match_columns 798
No_of_seqs 648 out of 4500
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 06:54:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038037.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038037hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 5.3E-58 1.2E-62 551.7 41.9 527 3-677 37-564 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.7E-53 3.7E-58 512.7 38.4 535 95-795 70-605 (968)
3 KOG4194 Membrane glycoprotein 100.0 2.2E-40 4.8E-45 334.3 9.0 403 178-684 56-463 (873)
4 KOG4194 Membrane glycoprotein 100.0 1.2E-38 2.6E-43 321.7 6.6 389 200-693 54-447 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 1.5E-39 3.3E-44 314.2 -14.8 475 69-673 45-541 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 1.2E-38 2.6E-43 308.0 -13.0 497 169-797 40-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 2.6E-35 5.6E-40 314.0 -4.6 461 176-771 47-511 (1081)
8 KOG0618 Serine/threonine phosp 100.0 9.9E-34 2.1E-38 302.0 -4.7 467 69-645 21-487 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 7.1E-32 1.5E-36 274.7 -4.1 365 303-795 6-373 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 6.2E-31 1.4E-35 267.8 -2.0 383 151-667 8-393 (1255)
11 KOG4237 Extracellular matrix p 99.9 4.8E-28 1E-32 234.7 -2.0 209 580-794 268-498 (498)
12 PLN03210 Resistant to P. syrin 99.9 2.1E-21 4.6E-26 233.9 27.3 368 42-481 531-904 (1153)
13 KOG4237 Extracellular matrix p 99.9 8.2E-25 1.8E-29 212.4 -3.9 281 152-482 69-358 (498)
14 PLN03210 Resistant to P. syrin 99.9 1.4E-20 3.1E-25 226.7 26.3 347 215-645 551-904 (1153)
15 PRK15387 E3 ubiquitin-protein 99.9 1.7E-21 3.6E-26 216.7 16.6 264 397-780 202-465 (788)
16 PRK15387 E3 ubiquitin-protein 99.9 6.4E-21 1.4E-25 212.1 17.7 257 423-798 203-459 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 1.5E-18 3.2E-23 194.9 11.9 227 397-678 179-405 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 2.5E-18 5.4E-23 193.1 13.5 203 444-673 178-380 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 6.2E-18 1.3E-22 177.6 5.3 183 74-258 3-205 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 1.7E-17 3.7E-22 174.2 3.5 158 98-259 2-178 (319)
21 KOG0617 Ras suppressor protein 99.6 3.6E-17 7.9E-22 140.9 -3.8 162 563-783 34-195 (264)
22 KOG0617 Ras suppressor protein 99.6 2.7E-17 5.9E-22 141.7 -6.2 147 530-680 72-219 (264)
23 KOG1909 Ran GTPase-activating 99.2 2.2E-12 4.8E-17 125.0 0.3 257 64-341 25-311 (382)
24 KOG0532 Leucine-rich repeat (L 99.2 7.8E-13 1.7E-17 135.7 -3.7 133 531-673 115-247 (722)
25 KOG0532 Leucine-rich repeat (L 99.1 5.9E-12 1.3E-16 129.4 -2.2 180 536-780 74-253 (722)
26 KOG3207 Beta-tubulin folding c 99.1 2.6E-11 5.5E-16 121.0 1.7 218 92-343 119-341 (505)
27 PF14580 LRR_9: Leucine-rich r 99.1 2.5E-11 5.5E-16 111.0 1.4 107 535-647 17-126 (175)
28 KOG1909 Ran GTPase-activating 99.1 1.5E-11 3.2E-16 119.5 -0.5 259 88-382 24-310 (382)
29 KOG1259 Nischarin, modulator o 99.1 2.5E-11 5.5E-16 114.8 0.8 134 535-677 282-415 (490)
30 KOG3207 Beta-tubulin folding c 99.1 6.3E-11 1.4E-15 118.3 3.0 122 365-488 141-264 (505)
31 PF13855 LRR_8: Leucine rich r 99.1 1E-10 2.3E-15 87.8 3.4 61 736-796 1-61 (61)
32 KOG1259 Nischarin, modulator o 99.0 8.1E-11 1.8E-15 111.4 2.4 232 141-410 173-413 (490)
33 COG4886 Leucine-rich repeat (L 99.0 8.2E-10 1.8E-14 119.3 8.2 139 531-678 157-295 (394)
34 PF14580 LRR_9: Leucine-rich r 99.0 2.4E-10 5.1E-15 104.7 3.3 107 563-674 20-127 (175)
35 PLN03150 hypothetical protein; 99.0 3.3E-09 7.2E-14 119.7 12.6 104 19-129 390-501 (623)
36 KOG4658 Apoptotic ATPase [Sign 99.0 9.8E-10 2.1E-14 126.3 7.7 271 43-341 523-807 (889)
37 COG4886 Leucine-rich repeat (L 98.9 2.8E-09 6E-14 115.2 9.4 112 535-652 184-295 (394)
38 PF13855 LRR_8: Leucine rich r 98.9 1.4E-09 3E-14 81.7 3.6 58 564-621 3-60 (61)
39 PLN03150 hypothetical protein; 98.9 3.5E-09 7.7E-14 119.5 8.3 106 539-645 420-526 (623)
40 KOG0531 Protein phosphatase 1, 98.9 4.4E-10 9.5E-15 121.3 0.2 249 393-677 69-322 (414)
41 KOG4658 Apoptotic ATPase [Sign 98.8 2.8E-09 6.2E-14 122.6 4.9 226 43-284 545-784 (889)
42 KOG0531 Protein phosphatase 1, 98.7 1.9E-09 4.1E-14 116.4 -0.3 246 367-650 69-321 (414)
43 KOG2120 SCF ubiquitin ligase, 98.6 1.3E-09 2.9E-14 103.4 -5.1 232 32-280 127-373 (419)
44 KOG2982 Uncharacterized conser 98.4 5.6E-08 1.2E-12 92.5 1.2 212 174-410 45-263 (418)
45 KOG4341 F-box protein containi 98.4 7.8E-09 1.7E-13 103.1 -4.7 39 220-258 292-332 (483)
46 KOG1859 Leucine-rich repeat pr 98.4 6E-09 1.3E-13 110.5 -7.1 84 170-258 183-266 (1096)
47 KOG2982 Uncharacterized conser 98.4 1.9E-07 4.1E-12 89.1 3.5 232 199-478 46-287 (418)
48 KOG2120 SCF ubiquitin ligase, 98.3 5.4E-08 1.2E-12 92.7 -2.1 182 43-233 185-374 (419)
49 COG5238 RNA1 Ran GTPase-activa 98.3 4.1E-07 8.9E-12 85.6 3.3 193 64-260 25-256 (388)
50 KOG1859 Leucine-rich repeat pr 98.1 6E-08 1.3E-12 103.2 -7.1 129 538-674 165-293 (1096)
51 KOG1644 U2-associated snRNP A' 98.0 7.8E-06 1.7E-10 74.0 4.9 131 539-673 21-153 (233)
52 PF12799 LRR_4: Leucine Rich r 98.0 5.9E-06 1.3E-10 56.4 2.8 38 737-775 2-39 (44)
53 COG5238 RNA1 Ran GTPase-activa 97.9 5.2E-06 1.1E-10 78.4 2.5 148 88-235 24-198 (388)
54 KOG4579 Leucine-rich repeat (L 97.9 3.7E-07 7.9E-12 76.8 -4.7 107 539-649 29-138 (177)
55 KOG4579 Leucine-rich repeat (L 97.9 8.6E-07 1.9E-11 74.7 -3.1 131 611-798 28-160 (177)
56 PF12799 LRR_4: Leucine Rich r 97.9 1E-05 2.2E-10 55.2 2.6 37 760-797 1-37 (44)
57 PRK15386 type III secretion pr 97.9 7.2E-05 1.6E-09 77.5 9.8 34 560-596 154-187 (426)
58 KOG3665 ZYG-1-like serine/thre 97.7 2.1E-05 4.5E-10 88.8 2.6 151 69-229 122-282 (699)
59 KOG1644 U2-associated snRNP A' 97.7 7.4E-05 1.6E-09 67.8 5.5 107 564-674 21-127 (233)
60 KOG3665 ZYG-1-like serine/thre 97.7 2.4E-05 5.1E-10 88.3 3.0 199 44-254 61-283 (699)
61 PRK15386 type III secretion pr 97.7 0.00017 3.8E-09 74.7 8.8 35 734-771 154-188 (426)
62 KOG4341 F-box protein containi 97.6 3.8E-06 8.2E-11 84.4 -3.4 85 305-406 139-226 (483)
63 PF13306 LRR_5: Leucine rich r 97.5 0.00017 3.8E-09 63.8 5.8 105 532-642 7-111 (129)
64 PF13306 LRR_5: Leucine rich r 97.4 0.00048 1E-08 61.0 7.6 124 554-687 5-128 (129)
65 KOG2739 Leucine-rich acidic nu 96.8 0.00076 1.7E-08 64.3 2.6 84 368-451 63-150 (260)
66 KOG2739 Leucine-rich acidic nu 96.7 0.00071 1.5E-08 64.5 1.7 64 585-648 64-130 (260)
67 KOG2123 Uncharacterized conser 96.7 5.4E-05 1.2E-09 72.0 -5.8 81 564-648 21-102 (388)
68 KOG2123 Uncharacterized conser 96.7 0.00015 3.3E-09 69.0 -3.1 79 43-129 19-99 (388)
69 KOG1947 Leucine rich repeat pr 96.6 0.00034 7.4E-09 78.1 -1.0 237 146-406 184-437 (482)
70 KOG1947 Leucine rich repeat pr 96.6 0.00056 1.2E-08 76.4 0.2 135 66-206 185-329 (482)
71 PF08263 LRRNT_2: Leucine rich 95.6 0.0051 1.1E-07 41.8 1.1 34 2-39 10-43 (43)
72 PF00560 LRR_1: Leucine Rich R 95.3 0.0058 1.3E-07 34.5 0.4 21 761-782 1-21 (22)
73 PF00560 LRR_1: Leucine Rich R 94.0 0.027 5.8E-07 31.7 1.1 11 589-599 3-13 (22)
74 smart00370 LRR Leucine-rich re 93.8 0.041 8.9E-07 32.5 1.7 23 759-781 1-23 (26)
75 smart00369 LRR_TYP Leucine-ric 93.8 0.041 8.9E-07 32.5 1.7 23 759-781 1-23 (26)
76 KOG4308 LRR-containing protein 92.1 0.0024 5.3E-08 69.2 -9.6 186 71-260 89-304 (478)
77 KOG4308 LRR-containing protein 91.8 0.0018 4E-08 70.1 -10.8 36 176-211 89-128 (478)
78 PF13504 LRR_7: Leucine rich r 90.6 0.21 4.5E-06 26.0 1.7 14 423-436 3-16 (17)
79 KOG3864 Uncharacterized conser 90.6 0.044 9.4E-07 50.5 -1.5 82 44-127 102-185 (221)
80 smart00369 LRR_TYP Leucine-ric 90.6 0.21 4.5E-06 29.4 1.9 19 610-628 2-20 (26)
81 smart00370 LRR Leucine-rich re 90.6 0.21 4.5E-06 29.4 1.9 19 610-628 2-20 (26)
82 smart00365 LRR_SD22 Leucine-ri 82.1 0.97 2.1E-05 26.6 1.5 17 759-775 1-17 (26)
83 KOG0473 Leucine-rich repeat pr 81.8 0.082 1.8E-06 49.6 -4.7 87 533-623 38-124 (326)
84 KOG0473 Leucine-rich repeat pr 81.1 0.058 1.2E-06 50.6 -5.9 83 563-648 43-125 (326)
85 KOG3864 Uncharacterized conser 80.9 0.36 7.7E-06 44.7 -0.9 61 328-406 101-161 (221)
86 PF13516 LRR_6: Leucine Rich r 78.8 0.55 1.2E-05 26.9 -0.3 15 537-551 2-16 (24)
87 smart00368 LRR_RI Leucine rich 71.3 3.2 7E-05 24.9 1.7 13 784-796 2-14 (28)
88 smart00364 LRR_BAC Leucine-ric 66.6 3.8 8.3E-05 24.0 1.2 18 421-438 2-19 (26)
89 KOG4242 Predicted myosin-I-bin 62.1 36 0.00078 36.3 8.1 38 305-342 414-454 (553)
90 KOG3763 mRNA export factor TAP 52.6 8.2 0.00018 41.8 1.8 66 367-433 215-282 (585)
91 TIGR00864 PCC polycystin catio 48.7 9.4 0.0002 49.8 1.8 32 616-647 1-32 (2740)
92 KOG3763 mRNA export factor TAP 36.8 26 0.00056 38.2 2.6 65 92-164 216-284 (585)
93 smart00367 LRR_CC Leucine-rich 31.4 33 0.00071 20.0 1.4 11 118-128 2-12 (26)
94 TIGR00864 PCC polycystin catio 24.9 43 0.00093 44.2 2.1 33 592-624 1-33 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5.3e-58 Score=551.69 Aligned_cols=527 Identities=35% Similarity=0.539 Sum_probs=288.3
Q ss_pred cccccccCcCCCCCCCCCCCCCCCCCCCceeeeeEecCCCCeEEEEEcCCCCccCcccCcccccccCCCCeEEcCCCCCC
Q 038037 3 INRDLDAWKFDCRPKAASWKPEEGDVDCCSWDGVHCDKNTGHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFN 82 (798)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~w~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~ 82 (798)
|++.+.++. ...++|.. ..+||.|.|+.|+. .++|+.|+++++.+.+..+. .+..+++|++|+|++|.+.
T Consensus 37 ~~~~~~~~~----~~~~~w~~---~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~--~~~~l~~L~~L~Ls~n~~~ 106 (968)
T PLN00113 37 FKSSINDPL----KYLSNWNS---SADVCLWQGITCNN-SSRVVSIDLSGKNISGKISS--AIFRLPYIQTINLSNNQLS 106 (968)
T ss_pred HHHhCCCCc----ccCCCCCC---CCCCCcCcceecCC-CCcEEEEEecCCCccccCCh--HHhCCCCCCEEECCCCccC
Confidence 556664332 35689976 67999999999985 46899999999988777654 7788888888888888876
Q ss_pred CCCCchhcc-CCCCCcEEEccCCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCCchHHHHhcCCCCCEEEccCCc
Q 038037 83 SSEIPPEII-NLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDAS 161 (798)
Q Consensus 83 ~~~l~~~~~-~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~ 161 (798)
.. +|..+. .+.+|++|+|++|.+++..|. +.+++|++|++++|.+. ..++..+..+++|++|++++|.
T Consensus 107 ~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~--------~~~p~~~~~l~~L~~L~L~~n~ 175 (968)
T PLN00113 107 GP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLS--------GEIPNDIGSFSSLKVLDLGGNV 175 (968)
T ss_pred Cc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCccc--------ccCChHHhcCCCCCEEECccCc
Confidence 54 565544 788888888888888766664 34667777777776521 2334445556666666666665
Q ss_pred cCCCCchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCEEecCCCcCCCccccc
Q 038037 162 IRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTS 241 (798)
Q Consensus 162 ~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 241 (798)
+.+..|..++++++|++|++++|.+.+..+..++++++|++|++++|.+.+..|..+..+++|++|++++|.+++..|..
T Consensus 176 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 255 (968)
T PLN00113 176 LVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS 255 (968)
T ss_pred ccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh
Confidence 55555555555555555555555555545555555555555555555555444555555555555555555554444444
Q ss_pred ccCCCCCCEEECcCCcCCCCCccccccCCCCceeecCCCCcceEecCCccccccCCccccCCCCCCEEEcCCCCccccCC
Q 038037 242 IGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVP 321 (798)
Q Consensus 242 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~ 321 (798)
+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..|
T Consensus 256 l~~l~~L~~L~L~~n~l~~~~p~~l----------------------------------~~l~~L~~L~Ls~n~l~~~~p 301 (968)
T PLN00113 256 LGNLKNLQYLFLYQNKLSGPIPPSI----------------------------------FSLQKLISLDLSDNSLSGEIP 301 (968)
T ss_pred HhCCCCCCEEECcCCeeeccCchhH----------------------------------hhccCcCEEECcCCeeccCCC
Confidence 4445555555555544444444444 444444444555444444445
Q ss_pred CCcCCCCCCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCcccCccchHHHhhcCCCCCeE
Q 038037 322 HSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEAL 401 (798)
Q Consensus 322 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L 401 (798)
..+..+++|+.|++++|.+.+..+. .+..+++|+.|++++|.+.+..+. .+..+++|+.|
T Consensus 302 ~~~~~l~~L~~L~l~~n~~~~~~~~------------------~~~~l~~L~~L~L~~n~l~~~~p~--~l~~~~~L~~L 361 (968)
T PLN00113 302 ELVIQLQNLEILHLFSNNFTGKIPV------------------ALTSLPRLQVLQLWSNKFSGEIPK--NLGKHNNLTVL 361 (968)
T ss_pred hhHcCCCCCcEEECCCCccCCcCCh------------------hHhcCCCCCEEECcCCCCcCcCCh--HHhCCCCCcEE
Confidence 5555555555555555555443332 344444555555555544332221 12333333333
Q ss_pred EcccccccccccCCCCCCccCccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCcccccccCcccceeeCCCCc
Q 038037 402 VLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNL 481 (798)
Q Consensus 402 ~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~ 481 (798)
++++|++.. .+|.++..+++|+.|++++|.+.+..|..+. .+++|+.|++++|+
T Consensus 362 ~Ls~n~l~~------------------------~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~--~~~~L~~L~L~~n~ 415 (968)
T PLN00113 362 DLSTNNLTG------------------------EIPEGLCSSGNLFKLILFSNSLEGEIPKSLG--ACRSLRRVRLQDNS 415 (968)
T ss_pred ECCCCeeEe------------------------eCChhHhCcCCCCEEECcCCEecccCCHHHh--CCCCCCEEECcCCE
Confidence 333332211 1233444455566666666665555544433 33333333333332
Q ss_pred cccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccc
Q 038037 482 LTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFS 561 (798)
Q Consensus 482 l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~ 561 (798)
+++..|..|..++.|+.|++++|.+++.++..+..++
T Consensus 416 -------------------------------------------l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 452 (968)
T PLN00113 416 -------------------------------------------FSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMP 452 (968)
T ss_pred -------------------------------------------eeeECChhHhcCCCCCEEECcCCcccCccChhhccCC
Confidence 2223444455555555555555555555554444444
Q ss_pred cccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEc
Q 038037 562 DELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLIL 641 (798)
Q Consensus 562 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 641 (798)
+|++|++++|++.+..|..+ ..++|+.|++++|++++..|..|.++++|+.|++++|++.+..|..+..+++|++|+|
T Consensus 453 -~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 530 (968)
T PLN00113 453 -SLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDL 530 (968)
T ss_pred -CCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEEC
Confidence 45555555555554444433 2345555555555555555555555555555555555555555555555555555555
Q ss_pred cCcccccccCCCCCcCCCCcccEEEccCCcCcCCCC
Q 038037 642 RSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLP 677 (798)
Q Consensus 642 ~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p 677 (798)
++|.+++..|..+ ..+++|+.|++++|++++.+|
T Consensus 531 s~N~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~p 564 (968)
T PLN00113 531 SHNQLSGQIPASF--SEMPVLSQLDLSQNQLSGEIP 564 (968)
T ss_pred CCCcccccCChhH--hCcccCCEEECCCCcccccCC
Confidence 5555554443322 344455555555555544444
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.7e-53 Score=512.65 Aligned_cols=535 Identities=34% Similarity=0.497 Sum_probs=382.1
Q ss_pred CCcEEEccCCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCCchHHH-HhcCCCCCEEEccCCccCCCCchhccCC
Q 038037 95 RLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANL-VEKLSNLETLDLGDASIRSTIPHNLANL 173 (798)
Q Consensus 95 ~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l 173 (798)
+++.|+|+++.+.+..+..+..+++|++|++++|.+. ..+|.. +..+++|++|++++|.+.+..|. +.+
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~--------~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l 139 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLS--------GPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSI 139 (968)
T ss_pred cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccC--------CcCChHHhccCCCCCEEECcCCccccccCc--ccc
Confidence 4555555555555555555555555555555555421 122222 23555555555555555544443 345
Q ss_pred CCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCEEecCCCcCCCcccccccCCCCCCEEEC
Q 038037 174 SSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDL 253 (798)
Q Consensus 174 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 253 (798)
++|++|++++|.+.+..+..++.+++|++|++++|.+.+..|..+.++++|++|++++|.+.+..|..+.++++|++|++
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 219 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL 219 (968)
T ss_pred CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence 66666777666666666666666777777777777666666666777777777777777776666777777777777777
Q ss_pred cCCcCCCCCccccccCCCCceeecCCCCcceEecCCccccccCCccccCCCCCCEEEcCCCCccccCCCCcCCCCCCcEE
Q 038037 254 SQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLL 333 (798)
Q Consensus 254 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 333 (798)
++|.+.+..|..++.+++|++|++++|.+ .+.+|..+..+++|+.|++++|.+.+..|..+..+++|++|
T Consensus 220 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l----------~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 289 (968)
T PLN00113 220 GYNNLSGEIPYEIGGLTSLNHLDLVYNNL----------TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISL 289 (968)
T ss_pred cCCccCCcCChhHhcCCCCCEEECcCcee----------ccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEE
Confidence 77777666676677777776555555443 23446666777777777777777777777777888888888
Q ss_pred eccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCcccCccchHHHhhcCCCCCeEEccccccccccc
Q 038037 334 YLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTK 413 (798)
Q Consensus 334 ~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~ 413 (798)
++++|.+.+..|. .+..+++|+.|++++|.+.+..+. .+..+++|+.|++++|.+..
T Consensus 290 ~Ls~n~l~~~~p~------------------~~~~l~~L~~L~l~~n~~~~~~~~--~~~~l~~L~~L~L~~n~l~~--- 346 (968)
T PLN00113 290 DLSDNSLSGEIPE------------------LVIQLQNLEILHLFSNNFTGKIPV--ALTSLPRLQVLQLWSNKFSG--- 346 (968)
T ss_pred ECcCCeeccCCCh------------------hHcCCCCCcEEECCCCccCCcCCh--hHhcCCCCCEEECcCCCCcC---
Confidence 8888877765544 566677777888887777654433 24556666666665554321
Q ss_pred CCCCCCccCccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCcccccccCcccceeeCCCCccccccCCCCCCC
Q 038037 414 ATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLP 493 (798)
Q Consensus 414 ~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~ 493 (798)
.+|..+..+++|+.|++++|.+.+..|..+. .++.++.+++++|
T Consensus 347 ---------------------~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~--~~~~L~~L~l~~n------------- 390 (968)
T PLN00113 347 ---------------------EIPKNLGKHNNLTVLDLSTNNLTGEIPEGLC--SSGNLFKLILFSN------------- 390 (968)
T ss_pred ---------------------cCChHHhCCCCCcEEECCCCeeEeeCChhHh--CcCCCCEEECcCC-------------
Confidence 2456667777788888888877776666554 3445555555444
Q ss_pred CcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCc
Q 038037 494 GKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNN 573 (798)
Q Consensus 494 l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~ 573 (798)
.+.+.+|..+..+++|+.|++++|++++..|..+..++ .|+.|++++|.
T Consensus 391 ------------------------------~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~Ls~N~ 439 (968)
T PLN00113 391 ------------------------------SLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLP-LVYFLDISNNN 439 (968)
T ss_pred ------------------------------EecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCC-CCCEEECcCCc
Confidence 44446677888899999999999999988888888887 79999999999
Q ss_pred cccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCC
Q 038037 574 FFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEP 653 (798)
Q Consensus 574 i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 653 (798)
+++..+..+..+++|+.|++++|++.+..|..+ ..++|+.|++++|++++..|..|..+++|+.|+|++|.+.+..|..
T Consensus 440 l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 518 (968)
T PLN00113 440 LQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDE 518 (968)
T ss_pred ccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChH
Confidence 998888888889999999999999988888765 4588999999999999888988999999999999999998877664
Q ss_pred CCcCCCCcccEEEccCCcCcCCCChhhhhcchhchhccccccccccCCCCCCCCccccchhccccceeeeccCcccccCC
Q 038037 654 RTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNK 733 (798)
Q Consensus 654 ~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (798)
+ ..+++|+.|++++|.+++.+|..+ ..
T Consensus 519 ~--~~l~~L~~L~Ls~N~l~~~~p~~~-~~-------------------------------------------------- 545 (968)
T PLN00113 519 L--SSCKKLVSLDLSHNQLSGQIPASF-SE-------------------------------------------------- 545 (968)
T ss_pred H--cCccCCCEEECCCCcccccCChhH-hC--------------------------------------------------
Confidence 4 678899999999999988777542 10
Q ss_pred ccCceeEEEcCCCcccccCchhhhcccCCCeEeCcCCccccCCCccccCCCCCCeEeCCCCc
Q 038037 734 IPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNR 795 (798)
Q Consensus 734 ~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 795 (798)
.+.|+.|+|++|++++.+|..+.++++|+.|++++|++.+.+|.. +.+..+....+.+|+
T Consensus 546 -l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~ 605 (968)
T PLN00113 546 -MPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNI 605 (968)
T ss_pred -cccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCc
Confidence 356889999999999999999999999999999999999888854 444555555666665
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-40 Score=334.30 Aligned_cols=403 Identities=26% Similarity=0.263 Sum_probs=302.9
Q ss_pred EEeccccccCccCcccccCC--CCCcEEEccCCCCCCccchhccCCCCCCEEecCCCcCCCcccccccCCCCCCEEECcC
Q 038037 178 FVSLRNCELEGRILSSFGNL--SKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQ 255 (798)
Q Consensus 178 ~L~l~~~~l~~~~~~~~~~l--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 255 (798)
.|+.+++.+..+....+.+. +.-+.|++++|.+....+..|.++++|+++++.+|.++ .+|.......+|++|+|.+
T Consensus 56 lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~ 134 (873)
T KOG4194|consen 56 LLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRH 134 (873)
T ss_pred eeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeec
Confidence 34555555543333333322 33456888888888777778888888888888888877 5666555556788888888
Q ss_pred CcCCCCCccccccCCCCceeecCCCCcceEecCCccccccCCccccCCCCCCEEEcCCCCccccCCCCcCCCCCCcEEec
Q 038037 256 NRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYL 335 (798)
Q Consensus 256 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 335 (798)
|.|.+...+.++.++.|+.|||+.|.|.++. ...|..-.++++|+|++|.|+......|..+.+|.+|.|
T Consensus 135 N~I~sv~se~L~~l~alrslDLSrN~is~i~----------~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkL 204 (873)
T KOG4194|consen 135 NLISSVTSEELSALPALRSLDLSRNLISEIP----------KPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKL 204 (873)
T ss_pred cccccccHHHHHhHhhhhhhhhhhchhhccc----------CCCCCCCCCceEEeeccccccccccccccccchheeeec
Confidence 8887777778888888888888888877764 223444467888888888888777788888888888888
Q ss_pred cCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCcccCccchHHHhhcCCCCCeEEcccccccccccCC
Q 038037 336 TFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKAT 415 (798)
Q Consensus 336 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~ 415 (798)
+.|+++...+. .|+++++|+.|++..|.+...... .|.++++|+.|.+..|.|..+.++.
T Consensus 205 srNrittLp~r------------------~Fk~L~~L~~LdLnrN~irive~l--tFqgL~Sl~nlklqrN~I~kL~DG~ 264 (873)
T KOG4194|consen 205 SRNRITTLPQR------------------SFKRLPKLESLDLNRNRIRIVEGL--TFQGLPSLQNLKLQRNDISKLDDGA 264 (873)
T ss_pred ccCcccccCHH------------------Hhhhcchhhhhhccccceeeehhh--hhcCchhhhhhhhhhcCcccccCcc
Confidence 88888866555 677788888888888887765444 3578888888888888777666543
Q ss_pred CCCCccCccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCcccccccCcccceeeCCCCccccccCCCCCCCCc
Q 038037 416 SNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGK 495 (798)
Q Consensus 416 ~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~ 495 (798)
|..+.++++|+|+.|++...-..+++ +++.|+.|++|+|.|..+.
T Consensus 265 ------------------------Fy~l~kme~l~L~~N~l~~vn~g~lf--gLt~L~~L~lS~NaI~rih--------- 309 (873)
T KOG4194|consen 265 ------------------------FYGLEKMEHLNLETNRLQAVNEGWLF--GLTSLEQLDLSYNAIQRIH--------- 309 (873)
T ss_pred ------------------------eeeecccceeecccchhhhhhccccc--ccchhhhhccchhhhheee---------
Confidence 55677777777887777777777776 6777777777777766543
Q ss_pred EEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccc
Q 038037 496 TFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFF 575 (798)
Q Consensus 496 ~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~ 575 (798)
+..+..+++|++|+|++|+|+...++.|..+. .|++|.|++|.|+
T Consensus 310 ----------------------------------~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~-~Le~LnLs~Nsi~ 354 (873)
T KOG4194|consen 310 ----------------------------------IDSWSFTQKLKELDLSSNRITRLDEGSFRVLS-QLEELNLSHNSID 354 (873)
T ss_pred ----------------------------------cchhhhcccceeEeccccccccCChhHHHHHH-HhhhhcccccchH
Confidence 34555677888888888888888888888877 6888888888888
Q ss_pred cccccccccCCCccEEEcCCCcccccCC---ccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCC
Q 038037 576 GTIPDTFIKESRLGVIDLSHNLFQGRIP---RSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKE 652 (798)
Q Consensus 576 ~~~~~~~~~l~~L~~L~Ls~N~i~~~~~---~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 652 (798)
.+...+|.++++|++|||++|.++..+. ..|.++++|+.|.|.+|++..+.-.+|.++++|+.|+|.+|.|..+.++
T Consensus 355 ~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~n 434 (873)
T KOG4194|consen 355 HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPN 434 (873)
T ss_pred HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccc
Confidence 8888888888888888888888876554 3477888888888888888877777888888888888888888888777
Q ss_pred CCCcCCCCcccEEEccCCcCcCCCChhhhhcc
Q 038037 653 PRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCW 684 (798)
Q Consensus 653 ~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~ 684 (798)
+| ..+ .|++|-+..-.+.|.+.-.|+..|
T Consensus 435 AF--e~m-~Lk~Lv~nSssflCDCql~Wl~qW 463 (873)
T KOG4194|consen 435 AF--EPM-ELKELVMNSSSFLCDCQLKWLAQW 463 (873)
T ss_pred cc--ccc-hhhhhhhcccceEEeccHHHHHHH
Confidence 65 444 788888877777777777776655
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-38 Score=321.74 Aligned_cols=389 Identities=25% Similarity=0.272 Sum_probs=304.5
Q ss_pred CcEEEccCCCCCCccchhccCC--CCCCEEecCCCcCCCcccccccCCCCCCEEECcCCcCCCCCccccccCCCCceeec
Q 038037 200 LLHLDLSLNELRGELLVSIGNL--HSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDL 277 (798)
Q Consensus 200 L~~L~Ls~n~i~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 277 (798)
-+.|+.+++.+.......+.+. ..-+.|++++|+++.+-+..|.++++|+.+++.+|.+ ..+|.......+|+.|+|
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~L-t~IP~f~~~sghl~~L~L 132 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNEL-TRIPRFGHESGHLEKLDL 132 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchh-hhcccccccccceeEEee
Confidence 3567777777765443333332 3455688888888877777788888888888888887 456665555566877777
Q ss_pred CCCCcceEecCCccccccCCccccCCCCCCEEEcCCCCccccCCCCcCCCCCCcEEeccCccCcCCcchhcccccCCccc
Q 038037 278 SRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKAL 357 (798)
Q Consensus 278 ~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l 357 (798)
.+|.|.++. .+.++.++.|+.|||+.|.+.......|..-.++++|+|++|.|+.....
T Consensus 133 ~~N~I~sv~----------se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~----------- 191 (873)
T KOG4194|consen 133 RHNLISSVT----------SEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETG----------- 191 (873)
T ss_pred ecccccccc----------HHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccc-----------
Confidence 777776653 44566778888888888888666556677667788888888888765555
Q ss_pred ccCCCChhhhcCCCCcEEeccCCcccCccchHHHhhcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcc
Q 038037 358 HVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFP 437 (798)
Q Consensus 358 ~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~ 437 (798)
.|..+.+|..|.++.|+++.++.. .|+.+++|+.|++..|+|..+..
T Consensus 192 -------~F~~lnsL~tlkLsrNrittLp~r--~Fk~L~~L~~LdLnrN~irive~------------------------ 238 (873)
T KOG4194|consen 192 -------HFDSLNSLLTLKLSRNRITTLPQR--SFKRLPKLESLDLNRNRIRIVEG------------------------ 238 (873)
T ss_pred -------cccccchheeeecccCcccccCHH--Hhhhcchhhhhhccccceeeehh------------------------
Confidence 566666777788888888777654 35777778877777776654432
Q ss_pred hhhhCCCCccEEECCCCcccCCCCcccccccCcccceeeCCCCccccccCCCCCCCCcEEeccCCccCCCCCCCCccceE
Q 038037 438 NFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETIL 517 (798)
Q Consensus 438 ~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~ 517 (798)
-.|.++++|+.|.+..|+|.......|+ .+.++++|+|+.|++..+
T Consensus 239 ltFqgL~Sl~nlklqrN~I~kL~DG~Fy--~l~kme~l~L~~N~l~~v-------------------------------- 284 (873)
T KOG4194|consen 239 LTFQGLPSLQNLKLQRNDISKLDDGAFY--GLEKMEHLNLETNRLQAV-------------------------------- 284 (873)
T ss_pred hhhcCchhhhhhhhhhcCcccccCccee--eecccceeecccchhhhh--------------------------------
Confidence 2367788888888888888877777776 788888888888777653
Q ss_pred EEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCc
Q 038037 518 YLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNL 597 (798)
Q Consensus 518 l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~ 597 (798)
-.+++.+++.|+.|++|+|.|..+.+..|...+ +|++|+|+.|+|+...++.|..+..|++|+|++|.
T Consensus 285 -----------n~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftq-kL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns 352 (873)
T KOG4194|consen 285 -----------NEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQ-KLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS 352 (873)
T ss_pred -----------hcccccccchhhhhccchhhhheeecchhhhcc-cceeEeccccccccCChhHHHHHHHhhhhcccccc
Confidence 346778899999999999999988888888777 79999999999999999999999999999999999
Q ss_pred ccccCCccccCCCCCcEEeCCCCcCCccCC---cccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcC
Q 038037 598 FQGRIPRSLVNCSKLEFLDLGNNQISDTFP---SWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTG 674 (798)
Q Consensus 598 i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~---~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~ 674 (798)
|+.+...+|.++++|++|||++|.++..+. ..|.++++|+.|.+.+|++..+...++ .++..|+.|||.+|.|.
T Consensus 353 i~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAf--sgl~~LE~LdL~~Naia- 429 (873)
T KOG4194|consen 353 IDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAF--SGLEALEHLDLGDNAIA- 429 (873)
T ss_pred hHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhh--ccCcccceecCCCCcce-
Confidence 999888999999999999999999987654 468899999999999999999976654 89999999999999998
Q ss_pred CCChhhhhcchhchhcccc
Q 038037 675 KLPSKSFLCWDAMKIVNTT 693 (798)
Q Consensus 675 ~~p~~~~~~~~~l~~~~~~ 693 (798)
++....|..+ .|+.+...
T Consensus 430 SIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 430 SIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred eecccccccc-hhhhhhhc
Confidence 6666667665 55544433
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.5e-39 Score=314.24 Aligned_cols=475 Identities=30% Similarity=0.406 Sum_probs=280.1
Q ss_pred CCCCeEEcCCCCCCCCCCchhccCCCCCcEEEccCCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCCchHHHHhc
Q 038037 69 VHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEK 148 (798)
Q Consensus 69 ~~L~~L~L~~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~ 148 (798)
..+..+.+++|.+.. +.+.+.++..|.+|++++|++. ++|.+++.+..++.++.++|.+ ..+|+.+..
T Consensus 45 v~l~~lils~N~l~~--l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~l---------s~lp~~i~s 112 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEV--LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKL---------SELPEQIGS 112 (565)
T ss_pred cchhhhhhccCchhh--ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchH---------hhccHHHhh
Confidence 345666777776654 4556677777777777777776 6777777777777777777752 456677777
Q ss_pred CCCCCEEEccCCccCCCCchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCEEe
Q 038037 149 LSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELD 228 (798)
Q Consensus 149 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 228 (798)
+.+|+++++++|.+. ..+..++.+-.++.++..+|+++. .|.++..+.+|..+++.+|.+....+..+. ++.|++||
T Consensus 113 ~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~s-lp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld 189 (565)
T KOG0472|consen 113 LISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQISS-LPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLD 189 (565)
T ss_pred hhhhhhhhcccccee-ecCchHHHHhhhhhhhcccccccc-CchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcc
Confidence 777777777777765 345566777777777777777773 455666777777777777777765555554 77777777
Q ss_pred cCCCcCCCcccccccCCCCCCEEECcCCcCCCCCccccccCCCCceeecCCCCcceEecCCccccccCCccccCCCCCCE
Q 038037 229 LSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKI 308 (798)
Q Consensus 229 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~ 308 (798)
...|-+. .+|..++.+.+|..|++..|++ ...| .|.++..|+++.++.|+|+.+. .+....++++.+
T Consensus 190 ~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki-~~lP-ef~gcs~L~Elh~g~N~i~~lp----------ae~~~~L~~l~v 256 (565)
T KOG0472|consen 190 CNSNLLE-TLPPELGGLESLELLYLRRNKI-RFLP-EFPGCSLLKELHVGENQIEMLP----------AEHLKHLNSLLV 256 (565)
T ss_pred cchhhhh-cCChhhcchhhhHHHHhhhccc-ccCC-CCCccHHHHHHHhcccHHHhhH----------HHHhccccccee
Confidence 7777766 5666677777777777777777 4455 5777777777777777665552 223346777777
Q ss_pred EEcCCCCccccCCCCcCCCCCCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCcccCccch
Q 038037 309 LDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIEL 388 (798)
Q Consensus 309 L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 388 (798)
||+.+|++ ...|..+.-+.+|+.||+++|.+++. |..++++ .|+.|.+.+|.+..+...
T Consensus 257 LDLRdNkl-ke~Pde~clLrsL~rLDlSNN~is~L-------------------p~sLgnl-hL~~L~leGNPlrTiRr~ 315 (565)
T KOG0472|consen 257 LDLRDNKL-KEVPDEICLLRSLERLDLSNNDISSL-------------------PYSLGNL-HLKFLALEGNPLRTIRRE 315 (565)
T ss_pred eecccccc-ccCchHHHHhhhhhhhcccCCccccC-------------------Ccccccc-eeeehhhcCCchHHHHHH
Confidence 88887777 45666677777778888888777642 3356666 677777777776544321
Q ss_pred HH------HhhcCCCCCeEEcccccccccccC------------CCCCCccCccEEeeCCCCCCCcchhhhCCCC---cc
Q 038037 389 DF------LLTSLKNLEALVLSSNRLSLLTKA------------TSNTTSQKFRYVGLRSCNLTEFPNFLKNQHH---LV 447 (798)
Q Consensus 389 ~~------~~~~l~~L~~L~l~~n~i~~~~~~------------~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~---L~ 447 (798)
.. .++.+.+ .+..-+++..... .......+.+.|++++-+++.+|+.++.... .+
T Consensus 316 ii~~gT~~vLKyLrs----~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt 391 (565)
T KOG0472|consen 316 IISKGTQEVLKYLRS----KIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVT 391 (565)
T ss_pred HHcccHHHHHHHHHH----hhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceE
Confidence 10 1111111 0000000000000 0000123344555555555555543332222 44
Q ss_pred EEECCCCcccCCCCcccccccCcccceeeCCCCccccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeec
Q 038037 448 ILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTG 527 (798)
Q Consensus 448 ~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~ 527 (798)
.++++.|++. .+|..
T Consensus 392 ~VnfskNqL~-elPk~---------------------------------------------------------------- 406 (565)
T KOG0472|consen 392 SVNFSKNQLC-ELPKR---------------------------------------------------------------- 406 (565)
T ss_pred EEecccchHh-hhhhh----------------------------------------------------------------
Confidence 4444444443 22222
Q ss_pred ccCccccCCCCC-CEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccc
Q 038037 528 EIPSWICNLNTL-KNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSL 606 (798)
Q Consensus 528 ~~~~~~~~l~~L-~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~ 606 (798)
+..+..+ +.+++++|.+. .+|..+..++ +|..|++++|.+. ..|..+..+..|+.||++.|++. ..|.+.
T Consensus 407 -----L~~lkelvT~l~lsnn~is-fv~~~l~~l~-kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~ 477 (565)
T KOG0472|consen 407 -----LVELKELVTDLVLSNNKIS-FVPLELSQLQ-KLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECL 477 (565)
T ss_pred -----hHHHHHHHHHHHhhcCccc-cchHHHHhhh-cceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHH
Confidence 2112221 12333333333 4444444554 4555555555554 33444555555666666666666 556555
Q ss_pred cCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCc
Q 038037 607 VNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFT 673 (798)
Q Consensus 607 ~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~ 673 (798)
..+..++.+-.++|++..+.|..+.++.+|..|+|.+|.+..++| ..+++++|+.|++++|+|.
T Consensus 478 y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp---~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 478 YELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPP---ILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCCh---hhccccceeEEEecCCccC
Confidence 555556666666666665555556666666666666666666543 2356667777777777764
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.2e-38 Score=308.03 Aligned_cols=497 Identities=30% Similarity=0.376 Sum_probs=332.9
Q ss_pred hccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCEEecCCCcCCCcccccccCCCCC
Q 038037 169 NLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSL 248 (798)
Q Consensus 169 ~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 248 (798)
..+.-..++.+.+++|.++ .....+.++..|.+|++++|++. ..|.+++.+..++.++.++|+++ .+|+.+..+.+|
T Consensus 40 ~wW~qv~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l 116 (565)
T KOG0472|consen 40 NWWEQVDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISL 116 (565)
T ss_pred hhhhhcchhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhh
Confidence 3444456666677776665 33445566666667777776666 34556666666666677776666 456666666666
Q ss_pred CEEECcCCcCCCCCccccccCCCCceeecCCCCcceEecCCccccccCCccccCCCCCCEEEcCCCCccccCCCCcCCCC
Q 038037 249 KKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFT 328 (798)
Q Consensus 249 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~ 328 (798)
+++++++|.+ ...++.++.+-.++.++..+|++.++ |+.+..+.+|..+++.+|.+....|..+. ++
T Consensus 117 ~~l~~s~n~~-~el~~~i~~~~~l~dl~~~~N~i~sl-----------p~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~ 183 (565)
T KOG0472|consen 117 VKLDCSSNEL-KELPDSIGRLLDLEDLDATNNQISSL-----------PEDMVNLSKLSKLDLEGNKLKALPENHIA-MK 183 (565)
T ss_pred hhhhccccce-eecCchHHHHhhhhhhhccccccccC-----------chHHHHHHHHHHhhccccchhhCCHHHHH-HH
Confidence 7777766666 33444566666666666666655443 55556666666666666666444333333 66
Q ss_pred CCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCcccCccchHHHhhcCCCCCeEEcccccc
Q 038037 329 RLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRL 408 (798)
Q Consensus 329 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~i 408 (798)
.|++++...|.+. .+|..++.+.+|..|++..|++...++ |.+|..|++++++.|.|
T Consensus 184 ~L~~ld~~~N~L~-------------------tlP~~lg~l~~L~~LyL~~Nki~~lPe----f~gcs~L~Elh~g~N~i 240 (565)
T KOG0472|consen 184 RLKHLDCNSNLLE-------------------TLPPELGGLESLELLYLRRNKIRFLPE----FPGCSLLKELHVGENQI 240 (565)
T ss_pred HHHhcccchhhhh-------------------cCChhhcchhhhHHHHhhhcccccCCC----CCccHHHHHHHhcccHH
Confidence 6666666666554 455578889999999999999987764 57899999999999988
Q ss_pred cccccCCCCCCccCccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCcccccccCcccceeeCCCCccccccCC
Q 038037 409 SLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQH 488 (798)
Q Consensus 409 ~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~ 488 (798)
+.++... ....+++..||++.|+++++|+.+.-+.+|++||+|+|.|++ .|..+. .+ +|+.|.+.+|++..+...
T Consensus 241 ~~lpae~-~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~-Lp~sLg--nl-hL~~L~leGNPlrTiRr~ 315 (565)
T KOG0472|consen 241 EMLPAEH-LKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISS-LPYSLG--NL-HLKFLALEGNPLRTIRRE 315 (565)
T ss_pred HhhHHHH-hcccccceeeeccccccccCchHHHHhhhhhhhcccCCcccc-CCcccc--cc-eeeehhhcCCchHHHHHH
Confidence 8776432 335678899999999999999988889999999999999985 444444 55 888888899888766532
Q ss_pred CCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCC--CCCEEEeeCcccccccChhhhccccccce
Q 038037 489 PAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLN--TLKNLVLSHNSLSGLLPQCLGNFSDELAV 566 (798)
Q Consensus 489 ~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~--~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~ 566 (798)
...... ..-++++. . ++. ...+..-. +-..-+ ...+..|.. ... .+.+.
T Consensus 316 ii~~gT-----------------~~vLKyLr--s-~~~---~dglS~se~~~e~~~t----~~~~~~~~~-~~~-i~tki 366 (565)
T KOG0472|consen 316 IISKGT-----------------QEVLKYLR--S-KIK---DDGLSQSEGGTETAMT----LPSESFPDI-YAI-ITTKI 366 (565)
T ss_pred HHcccH-----------------HHHHHHHH--H-hhc---cCCCCCCcccccccCC----CCCCcccch-hhh-hhhhh
Confidence 110000 00001110 0 000 00000000 000000 000111111 112 25788
Q ss_pred eecCCCccccccccccccCC--CccEEEcCCCcccccCCccccCCCCCcE-EeCCCCcCCccCCcccCCCCCCCEEEccC
Q 038037 567 LDLQGNNFFGTIPDTFIKES--RLGVIDLSHNLFQGRIPRSLVNCSKLEF-LDLGNNQISDTFPSWLGTLPNLNVLILRS 643 (798)
Q Consensus 567 L~L~~n~i~~~~~~~~~~l~--~L~~L~Ls~N~i~~~~~~~~~~l~~L~~-L~L~~N~i~~~~~~~~~~l~~L~~L~L~~ 643 (798)
|++++-+++.+..++|.... -...++++.|++. .+|..+..+..+.+ +.+++|.+ +.+|..+..+++|..|+|++
T Consensus 367 L~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~N 444 (565)
T KOG0472|consen 367 LDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSN 444 (565)
T ss_pred hcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhcceeeeccc
Confidence 88888888876666665432 3788999999998 67877776665554 45555555 47888899999999999999
Q ss_pred cccccccCCCCCcCCCCcccEEEccCCcCcCCCChhhhhcchhchhccccccccccCCCCCCCCccccchhccccceeee
Q 038037 644 NTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMN 723 (798)
Q Consensus 644 N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (798)
|.+-+++.+ +..+..|+.||+|.|++. .+|.....
T Consensus 445 N~Ln~LP~e---~~~lv~Lq~LnlS~NrFr-~lP~~~y~----------------------------------------- 479 (565)
T KOG0472|consen 445 NLLNDLPEE---MGSLVRLQTLNLSFNRFR-MLPECLYE----------------------------------------- 479 (565)
T ss_pred chhhhcchh---hhhhhhhheecccccccc-cchHHHhh-----------------------------------------
Confidence 999887443 356778999999999886 56654221
Q ss_pred ccCcccccCCccCceeEEEcCCCcccccCchhhhcccCCCeEeCcCCccccCCCccccCCCCCCeEeCCCCcCC
Q 038037 724 SKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFF 797 (798)
Q Consensus 724 ~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 797 (798)
+..++.+-.++|++..+.|..+.++.+|..|||.+|.+.. +|..++++++|++|+|+||+|.
T Consensus 480 -----------lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~-IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 480 -----------LQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQ-IPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred -----------HHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhh-CChhhccccceeEEEecCCccC
Confidence 2334455567799999998889999999999999999985 5667999999999999999984
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=2.6e-35 Score=314.01 Aligned_cols=461 Identities=29% Similarity=0.346 Sum_probs=310.7
Q ss_pred CCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCEEecCCCcCCCcccccccCCCCCCEEECcC
Q 038037 176 LSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQ 255 (798)
Q Consensus 176 L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 255 (798)
|+.|++++|.+. ..|..+..+.+|+.|+++.|.|.. .|....++++|+++.|.+|.+. ..|..+..+.+|+.|+++.
T Consensus 47 L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~~-vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~ 123 (1081)
T KOG0618|consen 47 LKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIRS-VPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSF 123 (1081)
T ss_pred eEEeeccccccc-cCCchhhhHHHHhhcccchhhHhh-Cchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccch
Confidence 555555555444 234444555555555555555552 3345555566666666655554 4555566666666666666
Q ss_pred CcCCCCCccccccCCCCceeecCCCCcceEecCCccccccCCccccCCCCCCEEEcCCCCccccCCCCcCCCCCCcEEec
Q 038037 256 NRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYL 335 (798)
Q Consensus 256 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 335 (798)
|.+ ...|..+..+..++.+..++| ..+. .++. ..++.+++..|.+.+.++.....++. .|++
T Consensus 124 N~f-~~~Pl~i~~lt~~~~~~~s~N--~~~~------------~lg~-~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldL 185 (1081)
T KOG0618|consen 124 NHF-GPIPLVIEVLTAEEELAASNN--EKIQ------------RLGQ-TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDL 185 (1081)
T ss_pred hcc-CCCchhHHhhhHHHHHhhhcc--hhhh------------hhcc-ccchhhhhhhhhcccchhcchhhhhe--eeec
Confidence 665 445555556666655555555 1110 0011 11566666666665656555555544 5888
Q ss_pred cCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCcccCccchHHHhhcCCCCCeEEcccccccccccCC
Q 038037 336 TFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKAT 415 (798)
Q Consensus 336 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~ 415 (798)
++|.+... .+..+++|+.+....|++..... .-++++.|+.++|.++...
T Consensus 186 r~N~~~~~---------------------dls~~~~l~~l~c~rn~ls~l~~------~g~~l~~L~a~~n~l~~~~--- 235 (1081)
T KOG0618|consen 186 RYNEMEVL---------------------DLSNLANLEVLHCERNQLSELEI------SGPSLTALYADHNPLTTLD--- 235 (1081)
T ss_pred ccchhhhh---------------------hhhhccchhhhhhhhcccceEEe------cCcchheeeeccCcceeec---
Confidence 88877611 35566677777777777665432 3477888888888877333
Q ss_pred CCCCccCccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCcccccccCcccceeeCCCCccccccCCCC-CCCC
Q 038037 416 SNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPA-VLPG 494 (798)
Q Consensus 416 ~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~-~~~l 494 (798)
....+.++++++++.++++.+|+|+..+.+|+.++..+|.++ ..|...+ ..++|+.+.+.+|.+..+++... ...+
T Consensus 236 ~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~--~~~~L~~l~~~~nel~yip~~le~~~sL 312 (1081)
T KOG0618|consen 236 VHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLV-ALPLRIS--RITSLVSLSAAYNELEYIPPFLEGLKSL 312 (1081)
T ss_pred cccccccceeeecchhhhhcchHHHHhcccceEecccchhHH-hhHHHHh--hhhhHHHHHhhhhhhhhCCCccccccee
Confidence 233567899999999999999999999999999999999996 4555554 67889999999999888776544 4445
Q ss_pred cEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCC-CCEEEeeCcccccccChhhhccccccceeecCCCc
Q 038037 495 KTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNT-LKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNN 573 (798)
Q Consensus 495 ~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~ 573 (798)
++|++..|++ ....+..+..... |..|..+.|++... |..=....+.|+.|++.+|.
T Consensus 313 ~tLdL~~N~L---------------------~~lp~~~l~v~~~~l~~ln~s~n~l~~l-p~~~e~~~~~Lq~LylanN~ 370 (1081)
T KOG0618|consen 313 RTLDLQSNNL---------------------PSLPDNFLAVLNASLNTLNVSSNKLSTL-PSYEENNHAALQELYLANNH 370 (1081)
T ss_pred eeeeehhccc---------------------cccchHHHhhhhHHHHHHhhhhcccccc-ccccchhhHHHHHHHHhcCc
Confidence 5555555444 3222223333333 77788888887743 32111122369999999999
Q ss_pred cccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCC
Q 038037 574 FFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEP 653 (798)
Q Consensus 574 i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 653 (798)
++...-..+.+..+|++|+|++|++.......+.++..|++|+||||+++ .+|.....+..|++|...+|++...+
T Consensus 371 Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~fP--- 446 (1081)
T KOG0618|consen 371 LTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSFP--- 446 (1081)
T ss_pred ccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeech---
Confidence 98776677888999999999999998555566788999999999999998 56788889999999999999988764
Q ss_pred CCcCCCCcccEEEccCCcCcCC-CChhhhhcchhchhccccccccccCCCCCCCCccccchhccccceeeeccCcccccC
Q 038037 654 RTDCGFSKLHIIDLSNNRFTGK-LPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYN 732 (798)
Q Consensus 654 ~~~~~~~~L~~L~ls~N~l~~~-~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (798)
.+..++.|+.+|+|.|.++.. +|.
T Consensus 447 -e~~~l~qL~~lDlS~N~L~~~~l~~------------------------------------------------------ 471 (1081)
T KOG0618|consen 447 -ELAQLPQLKVLDLSCNNLSEVTLPE------------------------------------------------------ 471 (1081)
T ss_pred -hhhhcCcceEEecccchhhhhhhhh------------------------------------------------------
Confidence 336788999999999988731 111
Q ss_pred Ccc-CceeEEEcCCCcccccCchhhhcccCCCeEeCcCCc
Q 038037 733 KIP-DILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNN 771 (798)
Q Consensus 733 ~~~-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 771 (798)
..| +.|++|||++|.=....-..|..++.+...++.-|+
T Consensus 472 ~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~~ 511 (1081)
T KOG0618|consen 472 ALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLNN 511 (1081)
T ss_pred hCCCcccceeeccCCcccccchhhhHHhhhhhheecccCC
Confidence 113 789999999997555666677777888888877773
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=9.9e-34 Score=302.00 Aligned_cols=467 Identities=28% Similarity=0.338 Sum_probs=276.0
Q ss_pred CCCCeEEcCCCCCCCCCCchhccCCCCCcEEEccCCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCCchHHHHhc
Q 038037 69 VHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEK 148 (798)
Q Consensus 69 ~~L~~L~L~~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~ 148 (798)
..+..|++..|.+...- .+.+.+..+|+.|++++|.+. ..|..+..+.+|+.|+++.|.+ ...+....+
T Consensus 21 ~~~~~ln~~~N~~l~~p-l~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i---------~~vp~s~~~ 89 (1081)
T KOG0618|consen 21 EALQILNLRRNSLLSRP-LEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYI---------RSVPSSCSN 89 (1081)
T ss_pred HHHHhhhccccccccCc-hHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhH---------hhCchhhhh
Confidence 34777888877665421 234445556888888888876 7788888888888888888863 234456777
Q ss_pred CCCCCEEEccCCccCCCCchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCEEe
Q 038037 149 LSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELD 228 (798)
Q Consensus 149 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 228 (798)
+.+|++|.+.+|... ..|..+..+++|+.|+++.|.+.. .|..+..+..++.+..++|.-. ..++... ++.++
T Consensus 90 ~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~~-~Pl~i~~lt~~~~~~~s~N~~~----~~lg~~~-ik~~~ 162 (1081)
T KOG0618|consen 90 MRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFGP-IPLVIEVLTAEEELAASNNEKI----QRLGQTS-IKKLD 162 (1081)
T ss_pred hhcchhheeccchhh-cCchhHHhhhcccccccchhccCC-CchhHHhhhHHHHHhhhcchhh----hhhcccc-chhhh
Confidence 888888888877664 567778888888888888887763 4556677777777777777211 1222222 67777
Q ss_pred cCCCcCCCcccccccCCCCCCEEECcCCcCCCCCccccccCCCCceeecCCCCcceEecCCccccccCCccccCCCCCCE
Q 038037 229 LSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKI 308 (798)
Q Consensus 229 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~ 308 (798)
+..|.+.+.++..+..+.. .|+|.+|.+. ...+..+++|+.+....|++.++++++ ++|+.
T Consensus 163 l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~~~g--------------~~l~~ 223 (1081)
T KOG0618|consen 163 LRLNVLGGSFLIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELEISG--------------PSLTA 223 (1081)
T ss_pred hhhhhcccchhcchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceEEecC--------------cchhe
Confidence 7777777666666665555 6888888774 234566777888888888777776432 46777
Q ss_pred EEcCCCCccccCCCCcCCCCCCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCcccCccch
Q 038037 309 LDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIEL 388 (798)
Q Consensus 309 L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 388 (798)
|+.++|.+....+... -.+|++++++.|++++ +|.++..+.+|+.+...+|.++..+..
T Consensus 224 L~a~~n~l~~~~~~p~--p~nl~~~dis~n~l~~-------------------lp~wi~~~~nle~l~~n~N~l~~lp~r 282 (1081)
T KOG0618|consen 224 LYADHNPLTTLDVHPV--PLNLQYLDISHNNLSN-------------------LPEWIGACANLEALNANHNRLVALPLR 282 (1081)
T ss_pred eeeccCcceeeccccc--cccceeeecchhhhhc-------------------chHHHHhcccceEecccchhHHhhHHH
Confidence 7777777753332211 2467777777776653 333666777777777777776544332
Q ss_pred HHHhhcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCccccccc
Q 038037 389 DFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPS 468 (798)
Q Consensus 389 ~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~ 468 (798)
+....+|+.|.+ ..|.+..+|.......+|++|++..|.+. ..|..++...
T Consensus 283 ---i~~~~~L~~l~~-------------------------~~nel~yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~ 333 (1081)
T KOG0618|consen 283 ---ISRITSLVSLSA-------------------------AYNELEYIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVL 333 (1081)
T ss_pred ---HhhhhhHHHHHh-------------------------hhhhhhhCCCcccccceeeeeeehhcccc-ccchHHHhhh
Confidence 233344444444 44444555555555666666666666665 3333333212
Q ss_pred CcccceeeCCCCccccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcc
Q 038037 469 MQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNS 548 (798)
Q Consensus 469 l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 548 (798)
...++.++.+.|++...+.... ...+.++.+++.+|.++...-..+.++..|+.|+|++|+
T Consensus 334 ~~~l~~ln~s~n~l~~lp~~~e-------------------~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr 394 (1081)
T KOG0618|consen 334 NASLNTLNVSSNKLSTLPSYEE-------------------NNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR 394 (1081)
T ss_pred hHHHHHHhhhhccccccccccc-------------------hhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc
Confidence 2335666666666655442111 012233334444444443333445555566666666666
Q ss_pred cccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCc
Q 038037 549 LSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPS 628 (798)
Q Consensus 549 i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~ 628 (798)
+.......+..+. .|++|+||||+++ .+|+....+..|++|...+|++. ..| .+..++.|+.+|++.|.++...-.
T Consensus 395 L~~fpas~~~kle-~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~ 470 (1081)
T KOG0618|consen 395 LNSFPASKLRKLE-ELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLP 470 (1081)
T ss_pred cccCCHHHHhchH-HhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhh
Confidence 5543334444444 4666666666665 33455555556666666666655 444 455556666666666655543221
Q ss_pred ccCCCCCCCEEEccCcc
Q 038037 629 WLGTLPNLNVLILRSNT 645 (798)
Q Consensus 629 ~~~~l~~L~~L~L~~N~ 645 (798)
.-..-++|+.|++++|.
T Consensus 471 ~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 471 EALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hhCCCcccceeeccCCc
Confidence 11111456666666655
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=7.1e-32 Score=274.67 Aligned_cols=365 Identities=27% Similarity=0.372 Sum_probs=234.8
Q ss_pred CCCCCEEEcCCCCcc-ccCCCCcCCCCCCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCc
Q 038037 303 FSSLKILDLRSCSFW-GKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNS 381 (798)
Q Consensus 303 l~~L~~L~L~~n~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~ 381 (798)
++-.+.+++++|.+. +..|.....|++++.|.+...++. .+|..++.+.+|++|.+++|+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-------------------~vPeEL~~lqkLEHLs~~HN~ 66 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-------------------QVPEELSRLQKLEHLSMAHNQ 66 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-------------------hChHHHHHHhhhhhhhhhhhh
Confidence 345566777777776 456777777788888777776654 456688888899999999998
Q ss_pred ccCccchHHHhhcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCC
Q 038037 382 YRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIP 461 (798)
Q Consensus 382 l~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~ 461 (798)
+..+.. .++.++.|+.+.+++|++...+.......+..|..|+++.|+++++|..+....++..|++|+|+|.. +|
T Consensus 67 L~~vhG---ELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Iet-IP 142 (1255)
T KOG0444|consen 67 LISVHG---ELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIET-IP 142 (1255)
T ss_pred hHhhhh---hhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCcccc-CC
Confidence 877655 46888899999999998877665555556677888888888888888888888888888888888874 45
Q ss_pred cccccccCcccceeeCCCCccccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCE
Q 038037 462 KWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKN 541 (798)
Q Consensus 462 ~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~ 541 (798)
..++. ++..|-.|+||+|++..++ ..+..+..|++
T Consensus 143 n~lfi-nLtDLLfLDLS~NrLe~LP--------------------------------------------PQ~RRL~~Lqt 177 (1255)
T KOG0444|consen 143 NSLFI-NLTDLLFLDLSNNRLEMLP--------------------------------------------PQIRRLSMLQT 177 (1255)
T ss_pred chHHH-hhHhHhhhccccchhhhcC--------------------------------------------HHHHHHhhhhh
Confidence 44443 6677777777777766443 33445556666
Q ss_pred EEeeCcccccccChhhhccccccceeecCCCccc-cccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCC
Q 038037 542 LVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFF-GTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNN 620 (798)
Q Consensus 542 L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N 620 (798)
|+|++|++....-..+..+. +|++|.+++.+-+ .-+|.++.++.+|..+|+|.|.+. +.|+++-.+.+|+.|+||+|
T Consensus 178 L~Ls~NPL~hfQLrQLPsmt-sL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N 255 (1255)
T KOG0444|consen 178 LKLSNNPLNHFQLRQLPSMT-SLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGN 255 (1255)
T ss_pred hhcCCChhhHHHHhcCccch-hhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcC
Confidence 66666665533223333343 4666666665422 234556666666666666666666 56666666666666666666
Q ss_pred cCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcC-CCChhhhhcchhchhcccccccccc
Q 038037 621 QISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTG-KLPSKSFLCWDAMKIVNTTELRYLQ 699 (798)
Q Consensus 621 ~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~-~~p~~~~~~~~~l~~~~~~~~~~~~ 699 (798)
+|+.. ....+.-.+|++|+++.|+++.+ +.+.|.+++|+.|++.+|+++- -+|+. .+.
T Consensus 256 ~iteL-~~~~~~W~~lEtLNlSrNQLt~L---P~avcKL~kL~kLy~n~NkL~FeGiPSG-IGK---------------- 314 (1255)
T KOG0444|consen 256 KITEL-NMTEGEWENLETLNLSRNQLTVL---PDAVCKLTKLTKLYANNNKLTFEGIPSG-IGK---------------- 314 (1255)
T ss_pred ceeee-eccHHHHhhhhhhccccchhccc---hHHHhhhHHHHHHHhccCcccccCCccc-hhh----------------
Confidence 66532 22233334566666666666654 2233666666666666666541 12221 000
Q ss_pred CCCCCCCCccccchhccccceeeeccCcccccCCccCceeEEEcCCCcccccCchhhhcccCCCeEeCcCCccccCCCcc
Q 038037 700 DVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSC 779 (798)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 779 (798)
+..|+.+..++|.+. ..|+.+..+.+|+.|.|++|++. ..|++
T Consensus 315 -----------------------------------L~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPea 357 (1255)
T KOG0444|consen 315 -----------------------------------LIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEA 357 (1255)
T ss_pred -----------------------------------hhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhh
Confidence 233455555566655 55666666666666666666654 35666
Q ss_pred ccCCCCCCeEeCCCCc
Q 038037 780 LGNLTNLESLDLSNNR 795 (798)
Q Consensus 780 ~~~l~~L~~L~Ls~N~ 795 (798)
+.-++.|+.||+..|+
T Consensus 358 IHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 358 IHLLPDLKVLDLRENP 373 (1255)
T ss_pred hhhcCCcceeeccCCc
Confidence 6666666666666664
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=6.2e-31 Score=267.84 Aligned_cols=383 Identities=28% Similarity=0.406 Sum_probs=231.6
Q ss_pred CCCEEEccCCccC-CCCchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCEEec
Q 038037 151 NLETLDLGDASIR-STIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDL 229 (798)
Q Consensus 151 ~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 229 (798)
-.+-.|+++|.++ +..|.....+++++.|.|...++. ..|..++.+.+|++|. +
T Consensus 8 FVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs------------------------~ 62 (1255)
T KOG0444|consen 8 FVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLS------------------------M 62 (1255)
T ss_pred eeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhh------------------------h
Confidence 3444555555555 234555555555555555555444 2333444444444444 4
Q ss_pred CCCcCCCcccccccCCCCCCEEECcCCcCCC-CCccccccCCCCceeecCCCCcceEecCCccccccCCccccCCCCCCE
Q 038037 230 SANILSSELPTSIGNLSSLKKLDLSQNRFFS-ELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKI 308 (798)
Q Consensus 230 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~ 308 (798)
++|++.. +...++.++.|+.+++.+|++.. -+|..+..+..|..||+++|++++. |..+..-+++-.
T Consensus 63 ~HN~L~~-vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~Ev-----------P~~LE~AKn~iV 130 (1255)
T KOG0444|consen 63 AHNQLIS-VHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREV-----------PTNLEYAKNSIV 130 (1255)
T ss_pred hhhhhHh-hhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhc-----------chhhhhhcCcEE
Confidence 4444432 22234445555555555554422 2344444555555555555555443 444445556666
Q ss_pred EEcCCCCccccCCCCcCCCCCCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCcccCccch
Q 038037 309 LDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIEL 388 (798)
Q Consensus 309 L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 388 (798)
|+|++|+|.++....|.+++.|-.||+++|++.. +|.....+..|++|.+++|.+....-.
T Consensus 131 LNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~-------------------LPPQ~RRL~~LqtL~Ls~NPL~hfQLr 191 (1255)
T KOG0444|consen 131 LNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEM-------------------LPPQIRRLSMLQTLKLSNNPLNHFQLR 191 (1255)
T ss_pred EEcccCccccCCchHHHhhHhHhhhccccchhhh-------------------cCHHHHHHhhhhhhhcCCChhhHHHHh
Confidence 6666666644444556667777777777777653 233566677777777777766533111
Q ss_pred HHHhhcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCccccccc
Q 038037 389 DFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPS 468 (798)
Q Consensus 389 ~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~ 468 (798)
.+..+.+|+.|.+++.+-+.. .+|..+..+.+|..+|+|.|.+. ..|..+. .
T Consensus 192 --QLPsmtsL~vLhms~TqRTl~-----------------------N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly--~ 243 (1255)
T KOG0444|consen 192 --QLPSMTSLSVLHMSNTQRTLD-----------------------NIPTSLDDLHNLRDVDLSENNLP-IVPECLY--K 243 (1255)
T ss_pred --cCccchhhhhhhcccccchhh-----------------------cCCCchhhhhhhhhccccccCCC-cchHHHh--h
Confidence 123344455556665532222 24555555566666666666654 4454444 5
Q ss_pred CcccceeeCCCCccccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcc
Q 038037 469 MQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNS 548 (798)
Q Consensus 469 l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 548 (798)
+++|+.|+||+|+|+.+.. ....-.+|++|++|.|+
T Consensus 244 l~~LrrLNLS~N~iteL~~--------------------------------------------~~~~W~~lEtLNlSrNQ 279 (1255)
T KOG0444|consen 244 LRNLRRLNLSGNKITELNM--------------------------------------------TEGEWENLETLNLSRNQ 279 (1255)
T ss_pred hhhhheeccCcCceeeeec--------------------------------------------cHHHHhhhhhhccccch
Confidence 5666666666666554321 12223467888888888
Q ss_pred cccccChhhhccccccceeecCCCcccc-ccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCC
Q 038037 549 LSGLLPQCLGNFSDELAVLDLQGNNFFG-TIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFP 627 (798)
Q Consensus 549 i~~~~~~~~~~~~~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~ 627 (798)
++ ..|.+++.++ .|+.|++.+|+++- -+|..++++..|+++..++|.+. ..|+.+..|..|+.|.|+.|++. .+|
T Consensus 280 Lt-~LP~avcKL~-kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLP 355 (1255)
T KOG0444|consen 280 LT-VLPDAVCKLT-KLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLP 355 (1255)
T ss_pred hc-cchHHHhhhH-HHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-ech
Confidence 87 6788888887 58888888888752 35677888888999999999888 78888999999999999999986 678
Q ss_pred cccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEc
Q 038037 628 SWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDL 667 (798)
Q Consensus 628 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~l 667 (798)
+++.-++.|+.|+++.|+-.-.+|.+.. .-++|+.-++
T Consensus 356 eaIHlL~~l~vLDlreNpnLVMPPKP~d--a~~~lefYNI 393 (1255)
T KOG0444|consen 356 EAIHLLPDLKVLDLRENPNLVMPPKPND--ARKKLEFYNI 393 (1255)
T ss_pred hhhhhcCCcceeeccCCcCccCCCCcch--hhhcceeeec
Confidence 8888899999999999986655555432 1245554443
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.93 E-value=4.8e-28 Score=234.69 Aligned_cols=209 Identities=21% Similarity=0.198 Sum_probs=139.1
Q ss_pred cccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCC
Q 038037 580 DTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGF 659 (798)
Q Consensus 580 ~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~ 659 (798)
..|.++++|+.|+|++|+|+.+-+.+|.+...+++|.|..|+|..+....|.++..|+.|+|.+|+|+.+.+.+| ..+
T Consensus 268 ~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF--~~~ 345 (498)
T KOG4237|consen 268 KCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAF--QTL 345 (498)
T ss_pred HHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccc--ccc
Confidence 356777777777777777777777777777777777777777766666667777777777777777777665544 556
Q ss_pred CcccEEEccCCcCcCCCChhhhhcchhchhc----cccccccccC------CCCC------------CCCccccchhccc
Q 038037 660 SKLHIIDLSNNRFTGKLPSKSFLCWDAMKIV----NTTELRYLQD------VIPP------------YGQVSTDLISTYD 717 (798)
Q Consensus 660 ~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~----~~~~~~~~~~------~~~~------------~~~~~~~~~~~~~ 717 (798)
.+|.+|++-.|++.+.+--.|+..|-.-+.. .+..-.++.+ .+.. .....+......+
T Consensus 346 ~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~ 425 (498)
T KOG4237|consen 346 FSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLD 425 (498)
T ss_pred ceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhh
Confidence 6777777777777766666666554222110 0000000000 0000 0111122233345
Q ss_pred cceeeeccCcccccCCccCceeEEEcCCCcccccCchhhhcccCCCeEeCcCCccccCCCccccCCCCCCeEeCCCC
Q 038037 718 YSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNN 794 (798)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 794 (798)
..+.+..++...-..++|...+++++.+|.++.+..+ .+.+| .+|+|+|+|....-..|.++++|.+|-||+|
T Consensus 426 tVvRcSnk~lk~lp~~iP~d~telyl~gn~~~~vp~~---~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 426 TVVRCSNKLLKLLPRGIPVDVTELYLDGNAITSVPDE---LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred hhHhhcccchhhcCCCCCchhHHHhcccchhcccCHH---HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 5555666777777788899999999999999966543 66778 9999999999888889999999999999987
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=2.1e-21 Score=233.88 Aligned_cols=368 Identities=23% Similarity=0.245 Sum_probs=235.8
Q ss_pred CCeEEEEEcCCCCccCcccCcccccccCCCCeEEcCCCCCCC-----CCCchhccCCC-CCcEEEccCCCCCCCCchhhh
Q 038037 42 TGHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNS-----SEIPPEIINLL-RLSYLNLSGASLSGQIPSEIL 115 (798)
Q Consensus 42 ~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~-----~~l~~~~~~l~-~L~~L~Ls~~~~~~~~~~~~~ 115 (798)
+.+++.+.+.-..+.........|..|++|+.|.+..+.+.. ..+|..+..++ +|+.|++.++.+. .+|..+
T Consensus 531 ~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f- 608 (1153)
T PLN03210 531 TKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF- 608 (1153)
T ss_pred cceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-
Confidence 346666665544443322333478899999999997664321 13566677664 6999999999886 788877
Q ss_pred cCCCCcEEEccCCCCCCCccccCCCchHHHHhcCCCCCEEEccCCccCCCCchhccCCCCCCEEeccccccCccCccccc
Q 038037 116 EFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFG 195 (798)
Q Consensus 116 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~ 195 (798)
...+|++|+++++.+ ..++..+..+++|+.|+++++.....+| .++.+++|++|++++|......|..+.
T Consensus 609 ~~~~L~~L~L~~s~l---------~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~ 678 (1153)
T PLN03210 609 RPENLVKLQMQGSKL---------EKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQ 678 (1153)
T ss_pred CccCCcEEECcCccc---------cccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhh
Confidence 578999999999873 2445566789999999999876545555 477889999999998875556777888
Q ss_pred CCCCCcEEEccCCCCCCccchhccCCCCCCEEecCCCcCCCcccccccCCCCCCEEECcCCcCCCCCccccccCCCCcee
Q 038037 196 NLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVL 275 (798)
Q Consensus 196 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 275 (798)
.+++|+.|++++|..-...|..+ ++++|+.|++++|.....+|.. ..+|+.|++++|.+. ..|..+ .+++|++|
T Consensus 679 ~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L 752 (1153)
T PLN03210 679 YLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDEL 752 (1153)
T ss_pred ccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccc
Confidence 89999999998875444555544 6888999999888655455532 457888888888874 345443 56778777
Q ss_pred ecCCCCcceEecCCccccccCCccccCCCCCCEEEcCCCCccccCCCCcCCCCCCcEEeccCccCcCCcchhcccccCCc
Q 038037 276 DLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLK 355 (798)
Q Consensus 276 ~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 355 (798)
.+.++....+. +.+....+..+..+++|+.|++++|.....+|..++++++|+.|++++|...+..|.
T Consensus 753 ~l~~~~~~~l~---~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~--------- 820 (1153)
T PLN03210 753 ILCEMKSEKLW---ERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT--------- 820 (1153)
T ss_pred cccccchhhcc---ccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC---------
Confidence 77665433221 011111122223345666666666665555666666666666666666543222221
Q ss_pred ccccCCCChhhhcCCCCcEEeccCCcccCccchHHHhhcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCC
Q 038037 356 ALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTE 435 (798)
Q Consensus 356 ~l~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~ 435 (798)
.. .+++|+.|++++|.... .++ ....+++.|++++|.++.
T Consensus 821 ---------~~-~L~sL~~L~Ls~c~~L~-------------------------~~p-----~~~~nL~~L~Ls~n~i~~ 860 (1153)
T PLN03210 821 ---------GI-NLESLESLDLSGCSRLR-------------------------TFP-----DISTNISDLNLSRTGIEE 860 (1153)
T ss_pred ---------CC-CccccCEEECCCCCccc-------------------------ccc-----ccccccCEeECCCCCCcc
Confidence 11 34455555555543211 111 112456667777777777
Q ss_pred cchhhhCCCCccEEECCCCcccCCCCcccccccCcccceeeCCCCc
Q 038037 436 FPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNL 481 (798)
Q Consensus 436 l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~ 481 (798)
+|.++..+++|+.|++++|.-...+|.... .+++|+.+++++|.
T Consensus 861 iP~si~~l~~L~~L~L~~C~~L~~l~~~~~--~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 861 VPWWIEKFSNLSFLDMNGCNNLQRVSLNIS--KLKHLETVDFSDCG 904 (1153)
T ss_pred ChHHHhcCCCCCEEECCCCCCcCccCcccc--cccCCCeeecCCCc
Confidence 777777777777787777544444444433 56677777777664
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.88 E-value=8.2e-25 Score=212.39 Aligned_cols=281 Identities=23% Similarity=0.244 Sum_probs=155.8
Q ss_pred CCEEEccCCccCCCCchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccC-CCCCCccchhccCCCCCCEEecC
Q 038037 152 LETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSL-NELRGELLVSIGNLHSLKELDLS 230 (798)
Q Consensus 152 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~L~ 230 (798)
-..++|..|.|+.+.+.+|+.+++|+.|+|++|.|+.+.+.+|.+++.|..|-+.+ |+|++.....|.++.+|+.|.+.
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 34456666666666666777777777777777777777777777776666555544 67776666667777777777776
Q ss_pred CCcCCCcccccccCCCCCCEEECcCCcCCCCCccccccCCCCceeecCCCCcceEecCCccccccCCccccCCCCCCEEE
Q 038037 231 ANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILD 310 (798)
Q Consensus 231 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~ 310 (798)
-|++..+..++|..+++|..|.+.+|.+.......|..+..++.+.+..|..... .+++.+..
T Consensus 149 an~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icd---------------CnL~wla~-- 211 (498)
T KOG4237|consen 149 ANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICD---------------CNLPWLAD-- 211 (498)
T ss_pred hhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccc---------------cccchhhh--
Confidence 6776666666677777777777777766544444666666666665555542110 01111110
Q ss_pred cCCCCccccCCCCcCCCCCCcEEeccCccCcCCcchhccc-ccCCc------ccccCCCC-hhhhcCCCCcEEeccCCcc
Q 038037 311 LRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGN-LRSLK------ALHVGQIP-SSLRNLTQLIVLSLSQNSY 382 (798)
Q Consensus 311 L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~------~l~l~~~~-~~~~~l~~L~~L~l~~n~l 382 (798)
+....|..++++.......+.+.++..+....|.. ++++. .--....| ..|+++++|++|++++|++
T Consensus 212 -----~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i 286 (498)
T KOG4237|consen 212 -----DLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKI 286 (498)
T ss_pred -----HHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCcc
Confidence 00112233444444444444454444433332211 11110 00001112 2466666666666666666
Q ss_pred cCccchHHHhhcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCc
Q 038037 383 RGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPK 462 (798)
Q Consensus 383 ~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~ 462 (798)
+.+.+.. |.+...+++|.+..|+|..+... .|.++..|+.|++.+|+|+...|.
T Consensus 287 ~~i~~~a--Fe~~a~l~eL~L~~N~l~~v~~~------------------------~f~~ls~L~tL~L~~N~it~~~~~ 340 (498)
T KOG4237|consen 287 TRIEDGA--FEGAAELQELYLTRNKLEFVSSG------------------------MFQGLSGLKTLSLYDNQITTVAPG 340 (498)
T ss_pred chhhhhh--hcchhhhhhhhcCcchHHHHHHH------------------------hhhccccceeeeecCCeeEEEecc
Confidence 6665543 45666666666666655544432 345556666666666666665555
Q ss_pred ccccccCcccceeeCCCCcc
Q 038037 463 WLLDPSMQYLNALNLSHNLL 482 (798)
Q Consensus 463 ~~~~~~l~~L~~L~ls~n~l 482 (798)
.|. .+..|.+|++-.|++
T Consensus 341 aF~--~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 341 AFQ--TLFSLSTLNLLSNPF 358 (498)
T ss_pred ccc--ccceeeeeehccCcc
Confidence 554 555666666655543
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=1.4e-20 Score=226.69 Aligned_cols=347 Identities=23% Similarity=0.298 Sum_probs=205.6
Q ss_pred chhccCCCCCCEEecCCCcC------CCcccccccCCC-CCCEEECcCCcCCCCCccccccCCCCceeecCCCCcceEec
Q 038037 215 LVSIGNLHSLKELDLSANIL------SSELPTSIGNLS-SLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHL 287 (798)
Q Consensus 215 ~~~~~~l~~L~~L~L~~n~l------~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l 287 (798)
..+|.++++|+.|.+..+.. ...+|..+..++ +|+.|.+.++.+ ...|..| ...+|++|++++++++.+
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l-~~lP~~f-~~~~L~~L~L~~s~l~~L-- 626 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPL-RCMPSNF-RPENLVKLQMQGSKLEKL-- 626 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCC-CCCCCcC-CccCCcEEECcCcccccc--
Confidence 34566666666666654321 123444454443 466666666665 3344444 345666666666555443
Q ss_pred CCccccccCCccccCCCCCCEEEcCCCCccccCCCCcCCCCCCcEEeccCccCcCCcchhcccccCCcccccCCCChhhh
Q 038037 288 SFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLR 367 (798)
Q Consensus 288 ~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~ 367 (798)
+..+..+++|+.++++++.....+|. +..+++|++|++++|...... |..+.
T Consensus 627 ---------~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~l------------------p~si~ 678 (1153)
T PLN03210 627 ---------WDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVEL------------------PSSIQ 678 (1153)
T ss_pred ---------ccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCcccc------------------chhhh
Confidence 23344566666666666554444443 555666666666665433222 22455
Q ss_pred cCCCCcEEeccCCcccCccchHHHhhcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcchhhhCCCCcc
Q 038037 368 NLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLV 447 (798)
Q Consensus 368 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~ 447 (798)
.+++|+.|++++|......+.. ..+++|+.|++++|. .+..+|.. ..+|+
T Consensus 679 ~L~~L~~L~L~~c~~L~~Lp~~---i~l~sL~~L~Lsgc~------------------------~L~~~p~~---~~nL~ 728 (1153)
T PLN03210 679 YLNKLEDLDMSRCENLEILPTG---INLKSLYRLNLSGCS------------------------RLKSFPDI---STNIS 728 (1153)
T ss_pred ccCCCCEEeCCCCCCcCccCCc---CCCCCCCEEeCCCCC------------------------Cccccccc---cCCcC
Confidence 5556666666554322111110 133444444444431 12233432 35678
Q ss_pred EEECCCCcccCCCCcccccccCcccceeeCCCCccccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeec
Q 038037 448 ILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTG 527 (798)
Q Consensus 448 ~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~ 527 (798)
.|++++|.+. .+|..+ .+++|+.|.+.++....+.... ..+.......+++++.+++++|....
T Consensus 729 ~L~L~~n~i~-~lP~~~---~l~~L~~L~l~~~~~~~l~~~~------------~~l~~~~~~~~~sL~~L~Ls~n~~l~ 792 (1153)
T PLN03210 729 WLDLDETAIE-EFPSNL---RLENLDELILCEMKSEKLWERV------------QPLTPLMTMLSPSLTRLFLSDIPSLV 792 (1153)
T ss_pred eeecCCCccc-cccccc---cccccccccccccchhhccccc------------cccchhhhhccccchheeCCCCCCcc
Confidence 8888888875 344433 4567777777664432221100 00111112235677888888887777
Q ss_pred ccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCcccc
Q 038037 528 EIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLV 607 (798)
Q Consensus 528 ~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~ 607 (798)
.+|..+.++++|+.|++++|...+.+|... .++ +|+.|++++|......|.. .++|+.|+|++|.++ .+|..+.
T Consensus 793 ~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~-sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~ 866 (1153)
T PLN03210 793 ELPSSIQNLHKLEHLEIENCINLETLPTGI-NLE-SLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIE 866 (1153)
T ss_pred ccChhhhCCCCCCEEECCCCCCcCeeCCCC-Ccc-ccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHh
Confidence 788888899999999999886555666654 454 7999999988755455543 367889999999988 5677888
Q ss_pred CCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcc
Q 038037 608 NCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNT 645 (798)
Q Consensus 608 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~ 645 (798)
.+++|++|++++|.-...+|..+..+++|+.+++++|.
T Consensus 867 ~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 867 KFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred cCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 88999999998865444566677788888888888885
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=1.7e-21 Score=216.69 Aligned_cols=264 Identities=26% Similarity=0.326 Sum_probs=159.6
Q ss_pred CCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCcccccccCcccceee
Q 038037 397 NLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALN 476 (798)
Q Consensus 397 ~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ 476 (798)
.-..|+++++.++.++... ...++.|++.+|+++.+|.. .++|++|++++|+++. +|. ..++|+.|+
T Consensus 202 ~~~~LdLs~~~LtsLP~~l----~~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~Lts-LP~-----lp~sL~~L~ 268 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCL----PAHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTS-LPV-----LPPGLLELS 268 (788)
T ss_pred CCcEEEcCCCCCCcCCcch----hcCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCc-ccC-----cccccceee
Confidence 3456666666666555422 13566666666666666542 3556666666665553 232 123455555
Q ss_pred CCCCccccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChh
Q 038037 477 LSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQC 556 (798)
Q Consensus 477 ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~ 556 (798)
+++|.+..++. .+..++.+++++|+++. +|.. .++|++|++++|+++++ |.
T Consensus 269 Ls~N~L~~Lp~-----------------------lp~~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~~L-p~- 319 (788)
T PRK15387 269 IFSNPLTHLPA-----------------------LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA- 319 (788)
T ss_pred ccCCchhhhhh-----------------------chhhcCEEECcCCcccc-cccc---ccccceeECCCCccccC-CC-
Confidence 55555554432 22344455555555553 2321 35677888888877743 32
Q ss_pred hhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCC
Q 038037 557 LGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNL 636 (798)
Q Consensus 557 ~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L 636 (798)
.+.+|+.|++++|.++++ |.. ..+|++|++++|+|+. +|.. ..+|+.|++++|+++. +|.. ..+|
T Consensus 320 ---lp~~L~~L~Ls~N~L~~L-P~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L 384 (788)
T PRK15387 320 ---LPSELCKLWAYNNQLTSL-PTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGL 384 (788)
T ss_pred ---CcccccccccccCccccc-ccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---cccc
Confidence 233577778888877743 321 2467788888888874 4432 2467777888888774 4432 2467
Q ss_pred CEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCChhhhhcchhchhccccccccccCCCCCCCCccccchhcc
Q 038037 637 NVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTY 716 (798)
Q Consensus 637 ~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (798)
+.|++++|++++++. ..++|+.|++++|+++ .+|..
T Consensus 385 ~~LdLs~N~Lt~LP~------l~s~L~~LdLS~N~Ls-sIP~l------------------------------------- 420 (788)
T PRK15387 385 KELIVSGNRLTSLPV------LPSELKELMVSGNRLT-SLPML------------------------------------- 420 (788)
T ss_pred ceEEecCCcccCCCC------cccCCCEEEccCCcCC-CCCcc-------------------------------------
Confidence 788888888776532 1356788888888776 34421
Q ss_pred ccceeeeccCcccccCCccCceeEEEcCCCcccccCchhhhcccCCCeEeCcCCccccCCCccc
Q 038037 717 DYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCL 780 (798)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 780 (798)
+..|+.|++++|+|+ .+|..+..+++|+.|+|++|++++..|..+
T Consensus 421 ------------------~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 421 ------------------PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred ------------------hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 234566778888887 456777888888888888888877766655
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=6.4e-21 Score=212.05 Aligned_cols=257 Identities=26% Similarity=0.363 Sum_probs=180.2
Q ss_pred ccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCcccccccCcccceeeCCCCccccccCCCCCCCCcEEeccCC
Q 038037 423 FRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSN 502 (798)
Q Consensus 423 L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~n 502 (798)
-..|+++++.++++|..+. ++|+.|++++|+++. +|. ..++|++|++++|+++.++.
T Consensus 203 ~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~-LP~-----lp~~Lk~LdLs~N~LtsLP~--------------- 259 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTS-LPA-----LPPELRTLEVSGNQLTSLPV--------------- 259 (788)
T ss_pred CcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCC-CCC-----CCCCCcEEEecCCccCcccC---------------
Confidence 4566777777777776554 367777777777663 332 23556666666666554432
Q ss_pred ccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCcccccccccc
Q 038037 503 NLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTF 582 (798)
Q Consensus 503 ~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~ 582 (798)
.++.++.+++++|.++. +|.. ..+|+.|++++|+++. +|. .+++|+.|++++|+++++ |..
T Consensus 260 --------lp~sL~~L~Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~-LP~----~p~~L~~LdLS~N~L~~L-p~l- 320 (788)
T PRK15387 260 --------LPPGLLELSIFSNPLTH-LPAL---PSGLCKLWIFGNQLTS-LPV----LPPGLQELSVSDNQLASL-PAL- 320 (788)
T ss_pred --------cccccceeeccCCchhh-hhhc---hhhcCEEECcCCcccc-ccc----cccccceeECCCCccccC-CCC-
Confidence 23455666666666653 3332 3568889999999884 343 224799999999998864 332
Q ss_pred ccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcc
Q 038037 583 IKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKL 662 (798)
Q Consensus 583 ~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L 662 (798)
...|+.|++++|.++. +|. + ..+|+.|+|++|+|+. +|.. .++|+.|++++|++..+.. ...+|
T Consensus 321 --p~~L~~L~Ls~N~L~~-LP~-l--p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~LP~------l~~~L 384 (788)
T PRK15387 321 --PSELCKLWAYNNQLTS-LPT-L--PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSLPA------LPSGL 384 (788)
T ss_pred --cccccccccccCcccc-ccc-c--ccccceEecCCCccCC-CCCC---CcccceehhhccccccCcc------ccccc
Confidence 2467888899998884 443 2 2578899999999885 4432 3578888899999887532 13578
Q ss_pred cEEEccCCcCcCCCChhhhhcchhchhccccccccccCCCCCCCCccccchhccccceeeeccCcccccCCccCceeEEE
Q 038037 663 HIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGII 742 (798)
Q Consensus 663 ~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 742 (798)
+.|++++|+++ .+|.. ++.|+.|+
T Consensus 385 ~~LdLs~N~Lt-~LP~l-------------------------------------------------------~s~L~~Ld 408 (788)
T PRK15387 385 KELIVSGNRLT-SLPVL-------------------------------------------------------PSELKELM 408 (788)
T ss_pred ceEEecCCccc-CCCCc-------------------------------------------------------ccCCCEEE
Confidence 89999999887 34421 35688999
Q ss_pred cCCCcccccCchhhhcccCCCeEeCcCCccccCCCccccCCCCCCeEeCCCCcCCC
Q 038037 743 LSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFFF 798 (798)
Q Consensus 743 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 798 (798)
+++|+|+++ |.. ..+|+.|++++|+|+ .+|..|.++++|+.|+|++|+|+|
T Consensus 409 LS~N~LssI-P~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 409 VSGNRLTSL-PML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred ccCCcCCCC-Ccc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCc
Confidence 999999964 543 357889999999998 578889999999999999999986
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.76 E-value=1.5e-18 Score=194.88 Aligned_cols=227 Identities=24% Similarity=0.373 Sum_probs=134.8
Q ss_pred CCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCcccccccCcccceee
Q 038037 397 NLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALN 476 (798)
Q Consensus 397 ~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ 476 (798)
+...|+++++.++.++... +..++.|++++|+++.+|..+. ++|+.|++++|.++. +|..+. ..|+.|+
T Consensus 179 ~~~~L~L~~~~LtsLP~~I----p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~Lts-LP~~l~----~~L~~L~ 247 (754)
T PRK15370 179 NKTELRLKILGLTTIPACI----PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTS-IPATLP----DTIQEME 247 (754)
T ss_pred CceEEEeCCCCcCcCCccc----ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCcccc-CChhhh----ccccEEE
Confidence 4566777777666655422 2456777777777777665443 467777777776653 343321 3466666
Q ss_pred CCCCccccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChh
Q 038037 477 LSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQC 556 (798)
Q Consensus 477 ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~ 556 (798)
+++|.+..++. ..+..++.+++++|+++ .+|..+. ++|+.|++++|++++ +|..
T Consensus 248 Ls~N~L~~LP~----------------------~l~s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~ 301 (754)
T PRK15370 248 LSINRITELPE----------------------RLPSALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAH 301 (754)
T ss_pred CcCCccCcCCh----------------------hHhCCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Cccc
Confidence 66666554432 12234455555555555 2344332 467777777777774 3433
Q ss_pred hhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCC
Q 038037 557 LGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNL 636 (798)
Q Consensus 557 ~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L 636 (798)
+ +.+|+.|++++|.++.+ |..+ .++|+.|++++|.++. +|..+. ++|+.|++++|+++ .+|..+. ++|
T Consensus 302 l---p~sL~~L~Ls~N~Lt~L-P~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L 369 (754)
T PRK15370 302 L---PSGITHLNVQSNSLTAL-PETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTI 369 (754)
T ss_pred c---hhhHHHHHhcCCccccC-Cccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCc
Confidence 2 23577777777777743 3322 2567777777777774 454443 57777777777776 3454442 577
Q ss_pred CEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCCh
Q 038037 637 NVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPS 678 (798)
Q Consensus 637 ~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~ 678 (798)
+.|+|++|+++.+++.. ...|+.|++++|+++ .+|.
T Consensus 370 ~~LdLs~N~Lt~LP~~l-----~~sL~~LdLs~N~L~-~LP~ 405 (754)
T PRK15370 370 TTLDVSRNALTNLPENL-----PAALQIMQASRNNLV-RLPE 405 (754)
T ss_pred CEEECCCCcCCCCCHhH-----HHHHHHHhhccCCcc-cCch
Confidence 77777777777653221 235777777777776 5554
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.76 E-value=2.5e-18 Score=193.07 Aligned_cols=203 Identities=26% Similarity=0.333 Sum_probs=111.2
Q ss_pred CCccEEECCCCcccCCCCcccccccCcccceeeCCCCccccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecc
Q 038037 444 HHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNN 523 (798)
Q Consensus 444 ~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n 523 (798)
.+...|+++++.++. +|..+ .+.++.|++++|+++.++.... .+++.|++++|.++..+...+..++.+++++|
T Consensus 178 ~~~~~L~L~~~~Lts-LP~~I----p~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N 251 (754)
T PRK15370 178 NNKTELRLKILGLTT-IPACI----PEQITTLILDNNELKSLPENLQ-GNIKTLYANSNQLTSIPATLPDTIQEMELSIN 251 (754)
T ss_pred cCceEEEeCCCCcCc-CCccc----ccCCcEEEecCCCCCcCChhhc-cCCCEEECCCCccccCChhhhccccEEECcCC
Confidence 356788888888874 45433 2468888888888887765433 56777777777776554444455666666666
Q ss_pred eeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCC
Q 038037 524 SLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIP 603 (798)
Q Consensus 524 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~ 603 (798)
.+. .+|..+. ++|++|++++|+++. +|..+. ++|+.|++++|+++.+ |..+. ++|+.|++++|.++. +|
T Consensus 252 ~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~---~sL~~L~Ls~N~Lt~L-P~~lp--~sL~~L~Ls~N~Lt~-LP 320 (754)
T PRK15370 252 RIT-ELPERLP--SALQSLDLFHNKISC-LPENLP---EELRYLSVYDNSIRTL-PAHLP--SGITHLNVQSNSLTA-LP 320 (754)
T ss_pred ccC-cCChhHh--CCCCEEECcCCccCc-cccccC---CCCcEEECCCCccccC-cccch--hhHHHHHhcCCcccc-CC
Confidence 655 3343332 355666666666552 343322 2456666666655532 22221 345555566665553 33
Q ss_pred ccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCc
Q 038037 604 RSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFT 673 (798)
Q Consensus 604 ~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~ 673 (798)
..+ .++|+.|++++|.++. +|..+. ++|+.|++++|+++.++ ... .++|+.|++++|+++
T Consensus 321 ~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~LP-~~l----p~~L~~LdLs~N~Lt 380 (754)
T PRK15370 321 ETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITVLP-ETL----PPTITTLDVSRNALT 380 (754)
T ss_pred ccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCCcCC-hhh----cCCcCEEECCCCcCC
Confidence 222 1455555566655553 333332 45555555555555431 111 235555555555554
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.70 E-value=6.2e-18 Score=177.62 Aligned_cols=183 Identities=27% Similarity=0.313 Sum_probs=91.9
Q ss_pred EEcCCCCCCCCCCchhccCCCCCcEEEccCCCCCCC----CchhhhcCCCCcEEEccCCCCCCCccccCCCchHHHHhcC
Q 038037 74 LNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQ----IPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKL 149 (798)
Q Consensus 74 L~L~~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l 149 (798)
|+|.++.++.......+..+.+|++|++++|.++.. ++..+...+.|++++++++.+.. .......++..+..+
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~--~~~~~~~~~~~l~~~ 80 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR--IPRGLQSLLQGLTKG 80 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC--cchHHHHHHHHHHhc
Confidence 455555555443455555666677777777665422 33344455667777776665321 000002234455666
Q ss_pred CCCCEEEccCCccCCCCchhccCCCC---CCEEeccccccCcc----CcccccCC-CCCcEEEccCCCCCCc----cchh
Q 038037 150 SNLETLDLGDASIRSTIPHNLANLSS---LSFVSLRNCELEGR----ILSSFGNL-SKLLHLDLSLNELRGE----LLVS 217 (798)
Q Consensus 150 ~~L~~L~l~~~~~~~~~~~~~~~l~~---L~~L~l~~~~l~~~----~~~~~~~l-~~L~~L~Ls~n~i~~~----~~~~ 217 (798)
++|++|++++|.+....+..+..+.. |++|++++|.+.+. ....+..+ ++|++|++++|.+++. ....
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence 67777777777665444444444433 66666666655421 11223344 5566666666655521 1223
Q ss_pred ccCCCCCCEEecCCCcCCCc----ccccccCCCCCCEEECcCCcC
Q 038037 218 IGNLHSLKELDLSANILSSE----LPTSIGNLSSLKKLDLSQNRF 258 (798)
Q Consensus 218 ~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~i 258 (798)
+..+++|++|++++|.+++. ++..+...++|++|++++|.+
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i 205 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGL 205 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCcc
Confidence 33444555555555555421 112223334555555555544
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.67 E-value=1.7e-17 Score=174.25 Aligned_cols=158 Identities=23% Similarity=0.218 Sum_probs=89.6
Q ss_pred EEEccCCCCC-CCCchhhhcCCCCcEEEccCCCCCCCccccCCCchHHHHhcCCCCCEEEccCCccCC------CCchhc
Q 038037 98 YLNLSGASLS-GQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRS------TIPHNL 170 (798)
Q Consensus 98 ~L~Ls~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~------~~~~~~ 170 (798)
.|+|..+.+. ...+..+..+.+|++|+++++.+..... ..++..+...+++++++++++.+.. ..+..+
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~----~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l 77 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAA----KALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGL 77 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHH----HHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHH
Confidence 4667777765 3445556677788899998887433211 2455667777888888888876652 122345
Q ss_pred cCCCCCCEEeccccccCccCcccccCCCC---CcEEEccCCCCCCc----cchhccCC-CCCCEEecCCCcCCCc----c
Q 038037 171 ANLSSLSFVSLRNCELEGRILSSFGNLSK---LLHLDLSLNELRGE----LLVSIGNL-HSLKELDLSANILSSE----L 238 (798)
Q Consensus 171 ~~l~~L~~L~l~~~~l~~~~~~~~~~l~~---L~~L~Ls~n~i~~~----~~~~~~~l-~~L~~L~L~~n~l~~~----~ 238 (798)
..+++|+.|++++|.+....+..+..+.+ |++|++++|.+.+. ....+..+ ++|++|++++|.+++. .
T Consensus 78 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~ 157 (319)
T cd00116 78 TKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL 157 (319)
T ss_pred HhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence 55666777777666665444444443333 66666666665521 11223334 5566666666655521 2
Q ss_pred cccccCCCCCCEEECcCCcCC
Q 038037 239 PTSIGNLSSLKKLDLSQNRFF 259 (798)
Q Consensus 239 ~~~~~~l~~L~~L~L~~n~i~ 259 (798)
+..+..+++|++|++++|.+.
T Consensus 158 ~~~~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 158 AKALRANRDLKELNLANNGIG 178 (319)
T ss_pred HHHHHhCCCcCEEECcCCCCc
Confidence 223344455555555555553
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.59 E-value=3.6e-17 Score=140.90 Aligned_cols=162 Identities=28% Similarity=0.415 Sum_probs=114.8
Q ss_pred ccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEcc
Q 038037 563 ELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILR 642 (798)
Q Consensus 563 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~ 642 (798)
..+.|.+++|+++. .|..+..+.+|+.|++++|+|. ..|..++.++.|+.|+++-|++. +.|..|+.+|.|+.|+|.
T Consensus 34 ~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 34 NITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLT 110 (264)
T ss_pred hhhhhhcccCceee-cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcc
Confidence 57778888888874 4445677888888888888888 56777888888888888888886 778888888888888888
Q ss_pred CcccccccCCCCCcCCCCcccEEEccCCcCcCCCChhhhhcchhchhccccccccccCCCCCCCCccccchhccccceee
Q 038037 643 SNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTM 722 (798)
Q Consensus 643 ~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (798)
.|.+..-. .+..|..++.|+.|++++|.+. .+|...
T Consensus 111 ynnl~e~~-lpgnff~m~tlralyl~dndfe-~lp~dv------------------------------------------ 146 (264)
T KOG0617|consen 111 YNNLNENS-LPGNFFYMTTLRALYLGDNDFE-ILPPDV------------------------------------------ 146 (264)
T ss_pred cccccccc-CCcchhHHHHHHHHHhcCCCcc-cCChhh------------------------------------------
Confidence 88775421 1223356677777777777776 455331
Q ss_pred eccCcccccCCccCceeEEEcCCCcccccCchhhhcccCCCeEeCcCCccccCCCccccCC
Q 038037 723 NSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNL 783 (798)
Q Consensus 723 ~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 783 (798)
+-++.|+.|.+..|.+- ..|..++.+++|++|.+.+|+++.+ |..++++
T Consensus 147 ----------g~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vl-ppel~~l 195 (264)
T KOG0617|consen 147 ----------GKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVL-PPELANL 195 (264)
T ss_pred ----------hhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeec-Chhhhhh
Confidence 01356777777777776 4567778888888888888888744 4345543
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.57 E-value=2.7e-17 Score=141.65 Aligned_cols=147 Identities=25% Similarity=0.415 Sum_probs=84.2
Q ss_pred CccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCcccc-ccccccccCCCccEEEcCCCcccccCCccccC
Q 038037 530 PSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFG-TIPDTFIKESRLGVIDLSHNLFQGRIPRSLVN 608 (798)
Q Consensus 530 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~ 608 (798)
|..++.+++|+.|+++-|++. ..|..|..++ .|+.||+..|++.+ ..|+.|-.++.|+.|+++.|.+. ++|...+.
T Consensus 72 p~~issl~klr~lnvgmnrl~-~lprgfgs~p-~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~ 148 (264)
T KOG0617|consen 72 PTSISSLPKLRILNVGMNRLN-ILPRGFGSFP-ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGK 148 (264)
T ss_pred Chhhhhchhhhheecchhhhh-cCccccCCCc-hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhh
Confidence 334445555556666555554 4555555555 46666666555543 34556666666666666666666 55666666
Q ss_pred CCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCChhh
Q 038037 609 CSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKS 680 (798)
Q Consensus 609 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~ 680 (798)
+++|+.|.+.+|.+. ..|..++.++.|++|.+.+|+++-++|+-....-..+=+...+.+|++...+.+++
T Consensus 149 lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppel~~l~l~~~k~v~r~E~NPwv~pIaeQf 219 (264)
T KOG0617|consen 149 LTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPELANLDLVGNKQVMRMEENPWVNPIAEQF 219 (264)
T ss_pred hcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChhhhhhhhhhhHHHHhhhhCCCCChHHHHH
Confidence 777777777777665 45666666777777777777766554432211111222334456666654444443
No 23
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.21 E-value=2.2e-12 Score=125.04 Aligned_cols=257 Identities=23% Similarity=0.241 Sum_probs=138.5
Q ss_pred cccccCCCCeEEcCCCCCCCCC---CchhccCCCCCcEEEccCC---CCCCCCchhh-------hcCCCCcEEEccCCCC
Q 038037 64 SLFKLVHLEWLNLAFNDFNSSE---IPPEIINLLRLSYLNLSGA---SLSGQIPSEI-------LEFSNLVSLDLSLNDG 130 (798)
Q Consensus 64 ~l~~~~~L~~L~L~~~~~~~~~---l~~~~~~l~~L~~L~Ls~~---~~~~~~~~~~-------~~l~~L~~L~l~~~~~ 130 (798)
.+..+..+..++|++|.+.... +...+.+.++|+..++++- +....+|.++ ..+++|++||||+|.+
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 4556677777777777766431 2344566677888888763 2223445443 4467889999998875
Q ss_pred CCCccccCCCchHHHHhcCCCCCEEEccCCccCCCCchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCC
Q 038037 131 PGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNEL 210 (798)
Q Consensus 131 ~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i 210 (798)
....+ ..+...++.+..|++|+|.+|.+.......++. .|..|. .+ .....-++|+++....|++
T Consensus 105 G~~g~----~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--~~-------kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 105 GPKGI----RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--VN-------KKAASKPKLRVFICGRNRL 169 (382)
T ss_pred Cccch----HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--HH-------hccCCCcceEEEEeecccc
Confidence 44433 355667788888999998888775332222221 111111 00 0112234455555555554
Q ss_pred CCc----cchhccCCCCCCEEecCCCcCCC----cccccccCCCCCCEEECcCCcCCCCC----ccccccCCCCceeecC
Q 038037 211 RGE----LLVSIGNLHSLKELDLSANILSS----ELPTSIGNLSSLKKLDLSQNRFFSEL----PTSIGNLGSLKVLDLS 278 (798)
Q Consensus 211 ~~~----~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~l~ 278 (798)
... ....|...+.|+.+.+..|.|.. ....+|..+++|++|||.+|.++... ...+..+++|++|+++
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 432 12234444555555555555432 12234455666666666666554322 2334445556555555
Q ss_pred CCCcceEecCCccccccCCcc-ccCCCCCCEEEcCCCCcccc----CCCCcCCCCCCcEEeccCccCc
Q 038037 279 RNGLFELHLSFNKFSGEFPWS-TRNFSSLKILDLRSCSFWGK----VPHSIGNFTRLQLLYLTFNNFS 341 (798)
Q Consensus 279 ~n~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~l~~n~l~ 341 (798)
+|.++.=- ...+... -...+.|+++.+.+|.++.. +.......+.|+.|++++|.+.
T Consensus 250 dcll~~~G------a~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 250 DCLLENEG------AIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred cccccccc------HHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 55443200 0000001 12256777777777777532 2233445788888888888884
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.19 E-value=7.8e-13 Score=135.73 Aligned_cols=133 Identities=31% Similarity=0.412 Sum_probs=62.7
Q ss_pred ccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCC
Q 038037 531 SWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCS 610 (798)
Q Consensus 531 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~ 610 (798)
..++++..|++||++.|+++ ..|..++.++ |+.|.+++|+++ ..|+.+..+..|..||.+.|.+. ..|..+.++.
T Consensus 115 ~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp--Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~ 189 (722)
T KOG0532|consen 115 EAICNLEALTFLDLSSNQLS-HLPDGLCDLP--LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLT 189 (722)
T ss_pred hhhhhhhHHHHhhhccchhh-cCChhhhcCc--ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHH
Confidence 34444445555555555554 3444444443 555555555554 33333444455555555555554 3344444555
Q ss_pred CCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCc
Q 038037 611 KLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFT 673 (798)
Q Consensus 611 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~ 673 (798)
+|+.|++..|++.. +|..+..+ .|..||+++|++..+ +.+|+.++.|++|-|.+|+++
T Consensus 190 slr~l~vrRn~l~~-lp~El~~L-pLi~lDfScNkis~i---Pv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 190 SLRDLNVRRNHLED-LPEELCSL-PLIRLDFSCNKISYL---PVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred HHHHHHHhhhhhhh-CCHHHhCC-ceeeeecccCceeec---chhhhhhhhheeeeeccCCCC
Confidence 55555555555442 23333322 345555555555444 233345555555555555554
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.10 E-value=5.9e-12 Score=129.39 Aligned_cols=180 Identities=28% Similarity=0.394 Sum_probs=136.9
Q ss_pred CCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEE
Q 038037 536 LNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFL 615 (798)
Q Consensus 536 l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L 615 (798)
+.--...|++.|++. .+|..+..+. .|+.+.++.|.|. .+|.+..++..|.+|||+.|+++ ..|..+..|+ |+.|
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~-~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFV-SLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL 148 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHH-HHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence 344456788888887 6677777776 6888888888887 66778888888888888888888 5666666655 8888
Q ss_pred eCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCChhhhhcchhchhcccccc
Q 038037 616 DLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTEL 695 (798)
Q Consensus 616 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~~~ 695 (798)
-+++|+++ .+|..++.++.|..|+.+.|.+..+.+ ..+++.+|+.|.++.|.+. .+|.+.. .
T Consensus 149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slps---ql~~l~slr~l~vrRn~l~-~lp~El~-~------------ 210 (722)
T KOG0532|consen 149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPS---QLGYLTSLRDLNVRRNHLE-DLPEELC-S------------ 210 (722)
T ss_pred EEecCccc-cCCcccccchhHHHhhhhhhhhhhchH---HhhhHHHHHHHHHhhhhhh-hCCHHHh-C------------
Confidence 88888887 667777788888888888888877633 3367888888888888887 5665421 0
Q ss_pred ccccCCCCCCCCccccchhccccceeeeccCcccccCCccCceeEEEcCCCcccccCchhhhcccCCCeEeCcCCccccC
Q 038037 696 RYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGH 775 (798)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 775 (798)
-.|..||+|+|+|+ .+|-.|..++.|++|-|.+|.++ .
T Consensus 211 ----------------------------------------LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-S 248 (722)
T KOG0532|consen 211 ----------------------------------------LPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-S 248 (722)
T ss_pred ----------------------------------------CceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-C
Confidence 12678899999998 67888999999999999999887 4
Q ss_pred CCccc
Q 038037 776 IPSCL 780 (798)
Q Consensus 776 ~p~~~ 780 (798)
+|..+
T Consensus 249 PPAqI 253 (722)
T KOG0532|consen 249 PPAQI 253 (722)
T ss_pred ChHHH
Confidence 55433
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=2.6e-11 Score=121.03 Aligned_cols=218 Identities=25% Similarity=0.221 Sum_probs=104.8
Q ss_pred CCCCCcEEEccCCCCCCCCc--hhhhcCCCCcEEEccCCCCCCCccccCCCchHHHHhcCCCCCEEEccCCccCCCCchh
Q 038037 92 NLLRLSYLNLSGASLSGQIP--SEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHN 169 (798)
Q Consensus 92 ~l~~L~~L~Ls~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~ 169 (798)
++.+|++..|.++.+. ..+ .....|++++.||+++|-+. .-..+......+|+|+.|+++.|++.......
T Consensus 119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~------nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~ 191 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFH------NWFPVLKIAEQLPSLENLNLSSNRLSNFISSN 191 (505)
T ss_pred hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHH------hHHHHHHHHHhcccchhcccccccccCCcccc
Confidence 3455666666665543 222 23445566666666655311 11233344455555555555555543221111
Q ss_pred ccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchh-ccCCCCCCEEecCCCcCCCcccccccCCCCC
Q 038037 170 LANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVS-IGNLHSLKELDLSANILSSELPTSIGNLSSL 248 (798)
Q Consensus 170 ~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 248 (798)
. -..+++|+.|.++.|.++...... ...+++|+.|++.+|....+......-+..|
T Consensus 192 ~-----------------------~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L 248 (505)
T KOG3207|consen 192 T-----------------------TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTL 248 (505)
T ss_pred c-----------------------hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHH
Confidence 1 113345555555555554221111 2234555555555553221222222334556
Q ss_pred CEEECcCCcCCCCC-ccccccCCCCceeecCCCCcceEecCCccccccCCccccCCCCCCEEEcCCCCccccC-CCCcCC
Q 038037 249 KKLDLSQNRFFSEL-PTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKV-PHSIGN 326 (798)
Q Consensus 249 ~~L~L~~n~i~~~~-~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~~~~ 326 (798)
+.|+|++|.+.... -...+.++.|+.|+++.+.+.++....... -+....+++|+.|++..|++...- -..+..
T Consensus 249 ~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s----~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~ 324 (505)
T KOG3207|consen 249 QELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVES----LDKTHTFPKLEYLNISENNIRDWRSLNHLRT 324 (505)
T ss_pred hhccccCCcccccccccccccccchhhhhccccCcchhcCCCccc----hhhhcccccceeeecccCccccccccchhhc
Confidence 66666666553321 123445566666666666665554322211 111344677888888887773221 123444
Q ss_pred CCCCcEEeccCccCcCC
Q 038037 327 FTRLQLLYLTFNNFSGD 343 (798)
Q Consensus 327 l~~L~~L~l~~n~l~~~ 343 (798)
+++|+.|.+..|.+..+
T Consensus 325 l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 325 LENLKHLRITLNYLNKE 341 (505)
T ss_pred cchhhhhhccccccccc
Confidence 67777777777777643
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.09 E-value=2.5e-11 Score=111.00 Aligned_cols=107 Identities=36% Similarity=0.417 Sum_probs=24.3
Q ss_pred CCCCCCEEEeeCcccccccChhhh-ccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccc-cCCCCC
Q 038037 535 NLNTLKNLVLSHNSLSGLLPQCLG-NFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSL-VNCSKL 612 (798)
Q Consensus 535 ~l~~L~~L~Ls~n~i~~~~~~~~~-~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~-~~l~~L 612 (798)
+...+++|+|++|.|+.+. .+. .+. +|+.|++++|.|+.+ +.+..++.|+.|++++|+|+.+. +.+ ..+++|
T Consensus 17 n~~~~~~L~L~~n~I~~Ie--~L~~~l~-~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L 90 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE--NLGATLD-KLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNL 90 (175)
T ss_dssp ---------------------S--TT-T-T--EEE-TTS--S----TT----TT--EEE--SS---S-C-HHHHHH-TT-
T ss_pred ccccccccccccccccccc--chhhhhc-CCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccc-cchHHhCCcC
Confidence 3445566666666665331 222 122 455555555555533 23445555555555555555332 222 235555
Q ss_pred cEEeCCCCcCCccCC-cccCCCCCCCEEEccCcccc
Q 038037 613 EFLDLGNNQISDTFP-SWLGTLPNLNVLILRSNTFY 647 (798)
Q Consensus 613 ~~L~L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~ 647 (798)
++|++++|+|..... ..++.+++|+.|+|.+|+++
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 555555555543211 23444455555555555544
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.08 E-value=1.5e-11 Score=119.46 Aligned_cols=259 Identities=22% Similarity=0.264 Sum_probs=159.2
Q ss_pred hhccCCCCCcEEEccCCCCCCCCch----hhhcCCCCcEEEccCCCCCCCccccCCCchH-------HHHhcCCCCCEEE
Q 038037 88 PEIINLLRLSYLNLSGASLSGQIPS----EILEFSNLVSLDLSLNDGPGGRLELQKPNLA-------NLVEKLSNLETLD 156 (798)
Q Consensus 88 ~~~~~l~~L~~L~Ls~~~~~~~~~~----~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~-------~~~~~l~~L~~L~ 156 (798)
+.+..+..+++++|++|.+...-.. .+.+.++|+.-+++.-. .+++. ..++ +.+..+++|++|+
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~f--tGR~~---~Ei~e~L~~l~~aL~~~~~L~~ld 98 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMF--TGRLK---DEIPEALKMLSKALLGCPKLQKLD 98 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhh--cCCcH---HHHHHHHHHHHHHHhcCCceeEee
Confidence 3455678889999999987643333 34556788888877542 11111 2222 3344566777777
Q ss_pred ccCCccCCCCchhc----cCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCEEecCCC
Q 038037 157 LGDASIRSTIPHNL----ANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSAN 232 (798)
Q Consensus 157 l~~~~~~~~~~~~~----~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 232 (798)
|++|.+....++.| .++..|++|.|.+|.+.......++. .|..|. .......-+.|+++....|
T Consensus 99 LSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~---------~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 99 LSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA---------VNKKAASKPKLRVFICGRN 167 (382)
T ss_pred ccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH---------HHhccCCCcceEEEEeecc
Confidence 77776654444333 34456666666666554322222221 111111 0112334578999999999
Q ss_pred cCCCc----ccccccCCCCCCEEECcCCcCCCC----CccccccCCCCceeecCCCCcceEecCCccccccCCccccCCC
Q 038037 233 ILSSE----LPTSIGNLSSLKKLDLSQNRFFSE----LPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFS 304 (798)
Q Consensus 233 ~l~~~----~~~~~~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~ 304 (798)
++... ....|...+.|+.+.++.|.|... ....|..+++|++||+.+|.++.-- ...+...+..++
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~eg------s~~LakaL~s~~ 241 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEG------SVALAKALSSWP 241 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHH------HHHHHHHhcccc
Confidence 98753 334566789999999999998543 2345778999988888888654310 011234556678
Q ss_pred CCCEEEcCCCCccccCCCCc-----CCCCCCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccC
Q 038037 305 SLKILDLRSCSFWGKVPHSI-----GNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQ 379 (798)
Q Consensus 305 ~L~~L~L~~n~~~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~ 379 (798)
+|+.+++++|.+......+| ...|.|+.+.+.+|.++......+. .++...+.|+.|++++
T Consensus 242 ~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la--------------~~~~ek~dL~kLnLng 307 (382)
T KOG1909|consen 242 HLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALA--------------ACMAEKPDLEKLNLNG 307 (382)
T ss_pred hheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHH--------------HHHhcchhhHHhcCCc
Confidence 89999999998865443333 2368899999999988754322111 1345577888888888
Q ss_pred Ccc
Q 038037 380 NSY 382 (798)
Q Consensus 380 n~l 382 (798)
|.+
T Consensus 308 N~l 310 (382)
T KOG1909|consen 308 NRL 310 (382)
T ss_pred ccc
Confidence 887
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.07 E-value=2.5e-11 Score=114.75 Aligned_cols=134 Identities=23% Similarity=0.218 Sum_probs=108.5
Q ss_pred CCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcE
Q 038037 535 NLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEF 614 (798)
Q Consensus 535 ~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~ 614 (798)
....|+++|||+|.|+ .+.+++.-.| .++.|++++|.|..+ +.+..+++|+.||||+|.++ ...++-..+.+.++
T Consensus 282 TWq~LtelDLS~N~I~-~iDESvKL~P-kir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDESVKLAP-KLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKT 356 (490)
T ss_pred hHhhhhhccccccchh-hhhhhhhhcc-ceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEee
Confidence 3467899999999998 4556666666 699999999999865 34788999999999999998 44555567889999
Q ss_pred EeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCC
Q 038037 615 LDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLP 677 (798)
Q Consensus 615 L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p 677 (798)
|.|++|.|... ..++.+-+|..|++++|+|....... ..+.++-|+.+.+.+|++.+ +|
T Consensus 357 L~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~-~IG~LPCLE~l~L~~NPl~~-~v 415 (490)
T KOG1259|consen 357 LKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVN-HIGNLPCLETLRLTGNPLAG-SV 415 (490)
T ss_pred eehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhc-ccccccHHHHHhhcCCCccc-cc
Confidence 99999998654 45788889999999999998764332 34778999999999999984 44
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=6.3e-11 Score=118.29 Aligned_cols=122 Identities=31% Similarity=0.320 Sum_probs=89.0
Q ss_pred hhhcCCCCcEEeccCCcccCccchHHHhhcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCC--CcchhhhC
Q 038037 365 SLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLT--EFPNFLKN 442 (798)
Q Consensus 365 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~--~l~~~~~~ 442 (798)
....++.++.|+++.|-+....+.......+|+|+.|+++.|++............+.++.|.++.|+++ .+......
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~ 220 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT 220 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence 4567788888888888877776666667888999999999988766555444456788999999999986 34455678
Q ss_pred CCCccEEECCCCcccCCCCcccccccCcccceeeCCCCccccccCC
Q 038037 443 QHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQH 488 (798)
Q Consensus 443 ~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~ 488 (798)
+|+|+.|++.+|..... .......++.|+.|+|++|.+..++..
T Consensus 221 fPsl~~L~L~~N~~~~~--~~~~~~i~~~L~~LdLs~N~li~~~~~ 264 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILI--KATSTKILQTLQELDLSNNNLIDFDQG 264 (505)
T ss_pred CCcHHHhhhhcccccce--ecchhhhhhHHhhccccCCcccccccc
Confidence 89999999999852211 111112567788888888888776643
No 31
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.06 E-value=1e-10 Score=87.77 Aligned_cols=61 Identities=43% Similarity=0.612 Sum_probs=58.5
Q ss_pred CceeEEEcCCCcccccCchhhhcccCCCeEeCcCCccccCCCccccCCCCCCeEeCCCCcC
Q 038037 736 DILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRF 796 (798)
Q Consensus 736 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 796 (798)
|.|+.|++++|+|+.+.++.|.++++|++|++++|+++.+.|++|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4689999999999999999999999999999999999999999999999999999999986
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.04 E-value=8.1e-11 Score=111.41 Aligned_cols=232 Identities=20% Similarity=0.186 Sum_probs=107.9
Q ss_pred chHHHHhcCCCCCEEEccCCc--------cCCCCchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCC
Q 038037 141 NLANLVEKLSNLETLDLGDAS--------IRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRG 212 (798)
Q Consensus 141 ~l~~~~~~l~~L~~L~l~~~~--------~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~ 212 (798)
.+...+..+..|..|.+++.. +....|..+..+++|+.+.++.|.-..+ .+.-..-+.|+++.+.+..+..
T Consensus 173 d~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i-~~~~~~kptl~t~~v~~s~~~~ 251 (490)
T KOG1259|consen 173 DFSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENI-VDIELLKPTLQTICVHNTTIQD 251 (490)
T ss_pred chHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhhe-eceeecCchhheeeeecccccc
Confidence 344556667778888776542 1122344444556666666666653321 1111223556666665554432
Q ss_pred ccchhccCCCCCCEEecCCC-cCCCcccccccCCCCCCEEECcCCcCCCCCccccccCCCCceeecCCCCcceEecCCcc
Q 038037 213 ELLVSIGNLHSLKELDLSAN-ILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNK 291 (798)
Q Consensus 213 ~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~ 291 (798)
.. .+-..+.+....-+.- ...+.....+.....|+.+||++|.|+ .+.+++.-.|+++.|++++|.+.++.
T Consensus 252 ~~--~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~----- 323 (490)
T KOG1259|consen 252 VP--SLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQ----- 323 (490)
T ss_pred cc--cccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeeh-----
Confidence 11 1111111111111100 011111111222345666666666663 23344555566666666666655542
Q ss_pred ccccCCccccCCCCCCEEEcCCCCccccCCCCcCCCCCCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCC
Q 038037 292 FSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQ 371 (798)
Q Consensus 292 ~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~ 371 (798)
.++.+++|+.|||++|.+.. ...|-..+-++++|.+++|.+.+.. .+.++-+
T Consensus 324 -------nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La~N~iE~LS--------------------GL~KLYS 375 (490)
T KOG1259|consen 324 -------NLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLAQNKIETLS--------------------GLRKLYS 375 (490)
T ss_pred -------hhhhcccceEeecccchhHh-hhhhHhhhcCEeeeehhhhhHhhhh--------------------hhHhhhh
Confidence 24445556666666555532 2333344555555555555543211 2334445
Q ss_pred CcEEeccCCcccCccchHHHhhcCCCCCeEEcccccccc
Q 038037 372 LIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSL 410 (798)
Q Consensus 372 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~i~~ 410 (798)
|..|++++|++..+.... .++++|.|+.+.+.+|++..
T Consensus 376 LvnLDl~~N~Ie~ldeV~-~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 376 LVNLDLSSNQIEELDEVN-HIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred heeccccccchhhHHHhc-ccccccHHHHHhhcCCCccc
Confidence 555555555555443332 34555555555555554433
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.99 E-value=8.2e-10 Score=119.32 Aligned_cols=139 Identities=40% Similarity=0.499 Sum_probs=98.1
Q ss_pred ccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCC
Q 038037 531 SWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCS 610 (798)
Q Consensus 531 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~ 610 (798)
..+..++.|+.|++++|+++.. |......+ .|+.|++++|++..+ |.....+..|++|.+++|.+. ..+..+..+.
T Consensus 157 ~~~~~l~~L~~L~l~~N~l~~l-~~~~~~~~-~L~~L~ls~N~i~~l-~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~ 232 (394)
T COG4886 157 SPLRNLPNLKNLDLSFNDLSDL-PKLLSNLS-NLNNLDLSGNKISDL-PPEIELLSALEELDLSNNSII-ELLSSLSNLK 232 (394)
T ss_pred hhhhccccccccccCCchhhhh-hhhhhhhh-hhhheeccCCccccC-chhhhhhhhhhhhhhcCCcce-ecchhhhhcc
Confidence 4566778888888888888744 33322343 688888888888744 433344556888888888544 3455677788
Q ss_pred CCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCCh
Q 038037 611 KLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPS 678 (798)
Q Consensus 611 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~ 678 (798)
++..+.+.+|++.. .+..++.+++++.|++++|.++.+.. .....+++.|++++|.+....|.
T Consensus 233 ~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~i~~----~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 233 NLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQISSISS----LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred cccccccCCceeee-ccchhccccccceecccccccccccc----ccccCccCEEeccCccccccchh
Confidence 88888888888763 35667778888888888888887743 35678888888888888755444
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.98 E-value=2.4e-10 Score=104.66 Aligned_cols=107 Identities=29% Similarity=0.378 Sum_probs=44.2
Q ss_pred ccceeecCCCccccccccccc-cCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEc
Q 038037 563 ELAVLDLQGNNFFGTIPDTFI-KESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLIL 641 (798)
Q Consensus 563 ~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 641 (798)
.+++|+|++|.|+.+ +.+. .+.+|+.|++++|.|+.+ +.+..++.|++|++++|+|+.+.+.....+++|++|++
T Consensus 20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred ccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 589999999999865 2344 578999999999999965 35888999999999999998654332346899999999
Q ss_pred cCcccccccCCCCCcCCCCcccEEEccCCcCcC
Q 038037 642 RSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTG 674 (798)
Q Consensus 642 ~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~ 674 (798)
++|+|..+.. -..+..+++|+.|++.+||++.
T Consensus 96 ~~N~I~~l~~-l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 96 SNNKISDLNE-LEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp TTS---SCCC-CGGGGG-TT--EEE-TT-GGGG
T ss_pred cCCcCCChHH-hHHHHcCCCcceeeccCCcccc
Confidence 9999988643 2345678999999999999984
No 35
>PLN03150 hypothetical protein; Provisional
Probab=98.97 E-value=3.3e-09 Score=119.68 Aligned_cols=104 Identities=32% Similarity=0.528 Sum_probs=71.7
Q ss_pred CCCCCCCCCCCC----ceeeeeEecCCC----CeEEEEEcCCCCccCcccCcccccccCCCCeEEcCCCCCCCCCCchhc
Q 038037 19 ASWKPEEGDVDC----CSWDGVHCDKNT----GHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEI 90 (798)
Q Consensus 19 ~~w~~~~~~~~~----~~w~~~~~~~~~----~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~l~~~~ 90 (798)
.+|.. ..| |.|.|+.|.... ..++.|+|+++.+.+.++. .+..+++|+.|+|++|.+... +|..+
T Consensus 390 ~~W~g----~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~--~i~~L~~L~~L~Ls~N~l~g~-iP~~~ 462 (623)
T PLN03150 390 FGWNG----DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPN--DISKLRHLQSINLSGNSIRGN-IPPSL 462 (623)
T ss_pred CCCCC----CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCH--HHhCCCCCCEEECCCCcccCc-CChHH
Confidence 48965 244 379999995321 2477888888777666655 666777777777777766654 66667
Q ss_pred cCCCCCcEEEccCCCCCCCCchhhhcCCCCcEEEccCCC
Q 038037 91 INLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLND 129 (798)
Q Consensus 91 ~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~ 129 (798)
+.+++|++|+|++|.+.+.+|..++.+++|++|++++|.
T Consensus 463 ~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~ 501 (623)
T PLN03150 463 GSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS 501 (623)
T ss_pred hCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCc
Confidence 777777777777777776677777777777777776665
No 36
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.96 E-value=9.8e-10 Score=126.34 Aligned_cols=271 Identities=23% Similarity=0.232 Sum_probs=146.0
Q ss_pred CeEEEEEcCCCCccCcccCcccccccCCCCeEEcCCCC--CCCCCCchhccCCCCCcEEEccCCCCCCCCchhhhcCCCC
Q 038037 43 GHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFND--FNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNL 120 (798)
Q Consensus 43 ~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~--~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L 120 (798)
..+|++.+-++.+.... .-..++.|++|-+..+. +... -.+.|..++.|++|||++|.-.+.+|..|+.+.+|
T Consensus 523 ~~~rr~s~~~~~~~~~~----~~~~~~~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L 597 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIA----GSSENPKLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL 597 (889)
T ss_pred hheeEEEEeccchhhcc----CCCCCCccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhh
Confidence 35566666666543222 33455578888887775 2221 23346678888888888776556788888888888
Q ss_pred cEEEccCCCCCCCccccCCCchHHHHhcCCCCCEEEccCCccCCCCchhccCCCCCCEEecccccc--CccCcccccCCC
Q 038037 121 VSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCEL--EGRILSSFGNLS 198 (798)
Q Consensus 121 ~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l--~~~~~~~~~~l~ 198 (798)
|+|+++++.+ ..+|..+.+++.|.+|++..+......+.....+.+|++|.+..... .......+..+.
T Consensus 598 ryL~L~~t~I---------~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le 668 (889)
T KOG4658|consen 598 RYLDLSDTGI---------SHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLE 668 (889)
T ss_pred hcccccCCCc---------cccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhccc
Confidence 8888888762 46778888888888888887765555566666688888888766542 222223334445
Q ss_pred CCcEEEccCCCCCCccchhccCCCCCC----EEecCCCcCCCcccccccCCCCCCEEECcCCcCCCCCcccccc------
Q 038037 199 KLLHLDLSLNELRGELLVSIGNLHSLK----ELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGN------ 268 (798)
Q Consensus 199 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~----~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~------ 268 (798)
+|+.+....... .....+..+..|. .+.+.++... ..+..+..+.+|+.|.+.++.+..........
T Consensus 669 ~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~ 745 (889)
T KOG4658|consen 669 HLENLSITISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLC 745 (889)
T ss_pred chhhheeecchh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhh
Confidence 555544432222 0111122222222 2222222221 23444566777777777777764332222111
Q ss_pred CCCCceeecCCCCcceEecCCccccccCCccccCCCCCCEEEcCCCCccccCCCCcCCCCCCcEEeccCccCc
Q 038037 269 LGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFS 341 (798)
Q Consensus 269 l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 341 (798)
++++..+...++..- ..+.+.-..++|+.|.+..|...+.+......+..++.+.+..+.+.
T Consensus 746 f~~l~~~~~~~~~~~-----------r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~ 807 (889)
T KOG4658|consen 746 FPNLSKVSILNCHML-----------RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLE 807 (889)
T ss_pred HHHHHHHHhhccccc-----------cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccc
Confidence 111111111111000 00112223467777777777665555554555555555444444444
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.92 E-value=2.8e-09 Score=115.22 Aligned_cols=112 Identities=38% Similarity=0.485 Sum_probs=83.2
Q ss_pred CCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcE
Q 038037 535 NLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEF 614 (798)
Q Consensus 535 ~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~ 614 (798)
..+.|+.|++++|++.. +|..... +..|+++.+++|.+. ..+..+..+.++..+.+.+|++.. .+..+..++++++
T Consensus 184 ~~~~L~~L~ls~N~i~~-l~~~~~~-~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~ 259 (394)
T COG4886 184 NLSNLNNLDLSGNKISD-LPPEIEL-LSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLET 259 (394)
T ss_pred hhhhhhheeccCCcccc-Cchhhhh-hhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhccccccce
Confidence 56788888888888874 4433222 225888888888644 345567788888888888888873 3566778888999
Q ss_pred EeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCC
Q 038037 615 LDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKE 652 (798)
Q Consensus 615 L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 652 (798)
|++++|+++.+.+ ++.+.+++.|++++|.+....+.
T Consensus 260 L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 260 LDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred ecccccccccccc--ccccCccCEEeccCccccccchh
Confidence 9999999886544 78888999999999988776544
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.88 E-value=1.4e-09 Score=81.69 Aligned_cols=58 Identities=36% Similarity=0.544 Sum_probs=28.7
Q ss_pred cceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCc
Q 038037 564 LAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQ 621 (798)
Q Consensus 564 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~ 621 (798)
|++|++++|+++.+.+++|.++++|++|++++|.++.+.+++|.++++|++|++++|+
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4455555555554444445555555555555555544444444455555555554444
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.87 E-value=3.5e-09 Score=119.47 Aligned_cols=106 Identities=31% Similarity=0.514 Sum_probs=70.5
Q ss_pred CCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCC
Q 038037 539 LKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLG 618 (798)
Q Consensus 539 L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~ 618 (798)
++.|+|++|.+.+.+|..+..++ +|+.|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|..+..+++|+.|+|+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~-~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLR-HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCC-CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 56667777777766666666665 57777777777766666666667777777777777766666666667777777777
Q ss_pred CCcCCccCCcccCCC-CCCCEEEccCcc
Q 038037 619 NNQISDTFPSWLGTL-PNLNVLILRSNT 645 (798)
Q Consensus 619 ~N~i~~~~~~~~~~l-~~L~~L~L~~N~ 645 (798)
+|++++.+|..+... .++..+++.+|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCc
Confidence 777666666655542 345566666665
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.86 E-value=4.4e-10 Score=121.34 Aligned_cols=249 Identities=25% Similarity=0.261 Sum_probs=165.6
Q ss_pred hcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCcccccccCccc
Q 038037 393 TSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYL 472 (798)
Q Consensus 393 ~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L 472 (798)
..+..++.+.++.|.|..+.. ....+.++..+++.+|.+..+...+..+++|++|++++|.|+...+-. .++.|
T Consensus 69 ~~l~~l~~l~l~~n~i~~~~~--~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~----~l~~L 142 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAKILN--HLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLS----TLTLL 142 (414)
T ss_pred HHhHhHHhhccchhhhhhhhc--ccccccceeeeeccccchhhcccchhhhhcchheeccccccccccchh----hccch
Confidence 345666667788776665211 123456788888888888777766677788888888888877555443 45557
Q ss_pred ceeeCCCCccccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecccC-ccccCCCCCCEEEeeCccccc
Q 038037 473 NALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIP-SWICNLNTLKNLVLSHNSLSG 551 (798)
Q Consensus 473 ~~L~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~ 551 (798)
+.|++++|.|+.+........++.+++++|.+... .+ . ...+.+++.+++.+|.+..
T Consensus 143 ~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~i---------------------e~~~-~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 143 KELNLSGNLISDISGLESLKSLKLLDLSYNRIVDI---------------------ENDE-LSELISLEELDLGGNSIRE 200 (414)
T ss_pred hhheeccCcchhccCCccchhhhcccCCcchhhhh---------------------hhhh-hhhccchHHHhccCCchhc
Confidence 78888888887777666656666666666555432 22 1 4567788888888888874
Q ss_pred ccChhhhccccccceeecCCCccccccccccccCC--CccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcc
Q 038037 552 LLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKES--RLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSW 629 (798)
Q Consensus 552 ~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~--~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~ 629 (798)
+.. +.... .+..+++..|.++.+.+ +..+. +|+.+++++|.+.. .+..+..+..+..|++.+|++... ..
T Consensus 201 i~~--~~~~~-~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~--~~ 272 (414)
T KOG0531|consen 201 IEG--LDLLK-KLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNL--EG 272 (414)
T ss_pred ccc--hHHHH-HHHHhhcccccceeccC--cccchhHHHHHHhcccCcccc-ccccccccccccccchhhcccccc--cc
Confidence 432 22232 46666888888875432 22223 38889999998883 335667788899999999988755 34
Q ss_pred cCCCCCCCEEEccCcccccccCCCCC--cCCCCcccEEEccCCcCcCCCC
Q 038037 630 LGTLPNLNVLILRSNTFYGIIKEPRT--DCGFSKLHIIDLSNNRFTGKLP 677 (798)
Q Consensus 630 ~~~l~~L~~L~L~~N~l~~~~~~~~~--~~~~~~L~~L~ls~N~l~~~~p 677 (798)
+...+.+..+....|.+......... ....+.++.+.+.+|++....+
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 273 LERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred ccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 56677788888888887643221111 3567788889999998875444
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.81 E-value=2.8e-09 Score=122.58 Aligned_cols=226 Identities=23% Similarity=0.285 Sum_probs=142.7
Q ss_pred CeEEEEEcCCCC--ccCcccCcccccccCCCCeEEcCCCCCCCCCCchhccCCCCCcEEEccCCCCCCCCchhhhcCCCC
Q 038037 43 GHVIKLDLSNSC--LFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNL 120 (798)
Q Consensus 43 ~~l~~L~l~~~~--~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L 120 (798)
++++.|-+.++. +..... ..|..++.|++|||++|.-... +|+.++.+.+||||+++++.+. .+|..+.+++.|
T Consensus 545 ~~L~tLll~~n~~~l~~is~--~ff~~m~~LrVLDLs~~~~l~~-LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L 620 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISG--EFFRSLPLLRVLDLSGNSSLSK-LPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKL 620 (889)
T ss_pred CccceEEEeecchhhhhcCH--HHHhhCcceEEEECCCCCccCc-CChHHhhhhhhhcccccCCCcc-ccchHHHHHHhh
Confidence 468888888875 222221 2588899999999998754443 9999999999999999999998 999999999999
Q ss_pred cEEEccCCCCCCCccccCCCchHHHHhcCCCCCEEEccCCccC--CCCchhccCCCCCCEEeccccccCccCcccccCCC
Q 038037 121 VSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIR--STIPHNLANLSSLSFVSLRNCELEGRILSSFGNLS 198 (798)
Q Consensus 121 ~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~ 198 (798)
.+||+..+.. ...++.....+++||+|.+...... ......+..+.+|+.+....... .....+..+.
T Consensus 621 ~~Lnl~~~~~--------l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~ 690 (889)
T KOG4658|consen 621 IYLNLEVTGR--------LESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMT 690 (889)
T ss_pred heeccccccc--------cccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhH
Confidence 9999998751 1233566777999999999776421 12223344555555555533322 0111223333
Q ss_pred CCc----EEEccCCCCCCccchhccCCCCCCEEecCCCcCCCcccccccC------CCCCCEEECcCCcCCCCCcccccc
Q 038037 199 KLL----HLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGN------LSSLKKLDLSQNRFFSELPTSIGN 268 (798)
Q Consensus 199 ~L~----~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~L~~n~i~~~~~~~~~~ 268 (798)
+|. .+.+.++... ..+..+..+.+|+.|.+.++.+......+... ++++..+.+.++.. ...+.+...
T Consensus 691 ~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~-~r~l~~~~f 768 (889)
T KOG4658|consen 691 RLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHM-LRDLTWLLF 768 (889)
T ss_pred HHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccc-ccccchhhc
Confidence 333 2332222222 34556777889999999988876433322221 22333333444432 122233345
Q ss_pred CCCCceeecCCCCcce
Q 038037 269 LGSLKVLDLSRNGLFE 284 (798)
Q Consensus 269 l~~L~~L~l~~n~l~~ 284 (798)
.++|+.|.+..+...+
T Consensus 769 ~~~L~~l~l~~~~~~e 784 (889)
T KOG4658|consen 769 APHLTSLSLVSCRLLE 784 (889)
T ss_pred cCcccEEEEecccccc
Confidence 6888888887775443
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.72 E-value=1.9e-09 Score=116.45 Aligned_cols=246 Identities=26% Similarity=0.285 Sum_probs=174.5
Q ss_pred hcCCCCcEEeccCCcccCccchHHHhhcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcchhhhCCCCc
Q 038037 367 RNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHL 446 (798)
Q Consensus 367 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L 446 (798)
..+..++.+.+..|.+..... .+..+.+|+.+++.+|.|..+... ...+.+|++|++++|.|+.+.. +..++.|
T Consensus 69 ~~l~~l~~l~l~~n~i~~~~~---~l~~~~~l~~l~l~~n~i~~i~~~--l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L 142 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAKILN---HLSKLKSLEALDLYDNKIEKIENL--LSSLVNLQVLDLSFNKITKLEG-LSTLTLL 142 (414)
T ss_pred HHhHhHHhhccchhhhhhhhc---ccccccceeeeeccccchhhcccc--hhhhhcchheeccccccccccc-hhhccch
Confidence 356677777888888876322 357889999999999998877652 3356899999999999998865 6677889
Q ss_pred cEEECCCCcccCCCCcccccccCcccceeeCCCCccccccC--CCCCCCCcEEeccCCccCCCCCCCCccceEEEeecce
Q 038037 447 VILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQ--HPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNS 524 (798)
Q Consensus 447 ~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~--~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~ 524 (798)
+.|++++|.|...... . .+..|+.+++++|++..+.. ......++.+.+.+|.+...
T Consensus 143 ~~L~l~~N~i~~~~~~--~--~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i----------------- 201 (414)
T KOG0531|consen 143 KELNLSGNLISDISGL--E--SLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREI----------------- 201 (414)
T ss_pred hhheeccCcchhccCC--c--cchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcc-----------------
Confidence 9999999999743322 1 47899999999999999887 35556666666666654322
Q ss_pred eecccCccccCCCCCCEEEeeCcccccccChhhhcccc-ccceeecCCCccccccccccccCCCccEEEcCCCcccccCC
Q 038037 525 LTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSD-ELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIP 603 (798)
Q Consensus 525 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~ 603 (798)
..+..+..+..+++..|.++...+- ..... .|+.+++++|.+... +..+..+..+..|++.+|++...
T Consensus 202 ------~~~~~~~~l~~~~l~~n~i~~~~~l--~~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~~~-- 270 (414)
T KOG0531|consen 202 ------EGLDLLKKLVLLSLLDNKISKLEGL--NELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRISNL-- 270 (414)
T ss_pred ------cchHHHHHHHHhhcccccceeccCc--ccchhHHHHHHhcccCccccc-cccccccccccccchhhcccccc--
Confidence 2233344555568888887744321 11110 278899999998743 35667788899999999988744
Q ss_pred ccccCCCCCcEEeCCCCcCCcc---CCcc-cCCCCCCCEEEccCccccccc
Q 038037 604 RSLVNCSKLEFLDLGNNQISDT---FPSW-LGTLPNLNVLILRSNTFYGII 650 (798)
Q Consensus 604 ~~~~~l~~L~~L~L~~N~i~~~---~~~~-~~~l~~L~~L~L~~N~l~~~~ 650 (798)
..+...+.+..+....|.+... .... ....+.++...+..|.+....
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (414)
T KOG0531|consen 271 EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKIS 321 (414)
T ss_pred ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCcccccc
Confidence 2345667788888888887632 1111 455678888999998877654
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=1.3e-09 Score=103.38 Aligned_cols=232 Identities=22% Similarity=0.241 Sum_probs=106.3
Q ss_pred eeeeeEecCCCCeEEEEEcCCCCccCcccCccccccc--CCCCeEEcCCCCCCCCCCchhccCC-CCCcEEEccCCCCCC
Q 038037 32 SWDGVHCDKNTGHVIKLDLSNSCLFGSINSSSSLFKL--VHLEWLNLAFNDFNSSEIPPEIINL-LRLSYLNLSGASLSG 108 (798)
Q Consensus 32 ~w~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~--~~L~~L~L~~~~~~~~~l~~~~~~l-~~L~~L~Ls~~~~~~ 108 (798)
+|.+..-+ ...-+.+|+.+-.+.... +..+ +.+.++++....+.+..+.+.+.-+ ..|++||||...++.
T Consensus 127 Rfyr~~~d--e~lW~~lDl~~r~i~p~~-----l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~ 199 (419)
T KOG2120|consen 127 RFYRLASD--ESLWQTLDLTGRNIHPDV-----LGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITV 199 (419)
T ss_pred HHhhcccc--ccceeeeccCCCccChhH-----HHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeH
Confidence 46554333 345667777776654321 1111 2333344433222222122222211 235555555555441
Q ss_pred C-CchhhhcCCCCcEEEccCCCCCCCccccCCCchHHHHhcCCCCCEEEccCCc-cCCC-CchhccCCCCCCEEeccccc
Q 038037 109 Q-IPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDAS-IRST-IPHNLANLSSLSFVSLRNCE 185 (798)
Q Consensus 109 ~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~-~~~~-~~~~~~~l~~L~~L~l~~~~ 185 (798)
. +-.-+..|++|+.|.+.+++ +. ..+...+++-.+|+.|+++.+. ++.. ..-.+.+++.|..|+++.|.
T Consensus 200 stl~~iLs~C~kLk~lSlEg~~-----Ld---D~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~ 271 (419)
T KOG2120|consen 200 STLHGILSQCSKLKNLSLEGLR-----LD---DPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCF 271 (419)
T ss_pred HHHHHHHHHHHhhhhccccccc-----cC---cHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhh
Confidence 1 12223445555555555554 11 3344445555555555555543 2211 11124455666666666655
Q ss_pred cCccCccc-ccCC-CCCcEEEccCCCC--C-CccchhccCCCCCCEEecCCCc-CCCcccccccCCCCCCEEECcCCcCC
Q 038037 186 LEGRILSS-FGNL-SKLLHLDLSLNEL--R-GELLVSIGNLHSLKELDLSANI-LSSELPTSIGNLSSLKKLDLSQNRFF 259 (798)
Q Consensus 186 l~~~~~~~-~~~l-~~L~~L~Ls~n~i--~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~ 259 (798)
+....... .... ++|..|+++++.- . .....-...+++|.+|||++|. ++......|.+++.|++|.++.|..
T Consensus 272 l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~- 350 (419)
T KOG2120|consen 272 LFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD- 350 (419)
T ss_pred ccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC-
Confidence 43221111 1111 4555666665421 1 1111122356677777776653 3333344455667777777777642
Q ss_pred CCCccc---cccCCCCceeecCCC
Q 038037 260 SELPTS---IGNLGSLKVLDLSRN 280 (798)
Q Consensus 260 ~~~~~~---~~~l~~L~~L~l~~n 280 (798)
.+|.. +...|.|.+|++.++
T Consensus 351 -i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 351 -IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred -CChHHeeeeccCcceEEEEeccc
Confidence 33332 355666766665554
No 44
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.44 E-value=5.6e-08 Score=92.54 Aligned_cols=212 Identities=21% Similarity=0.218 Sum_probs=137.7
Q ss_pred CCCCEEeccccccCccCc-ccc-cCCCCCcEEEccCCCCCC--ccchhccCCCCCCEEecCCCcCCCcccccccCCCCCC
Q 038037 174 SSLSFVSLRNCELEGRIL-SSF-GNLSKLLHLDLSLNELRG--ELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLK 249 (798)
Q Consensus 174 ~~L~~L~l~~~~l~~~~~-~~~-~~l~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 249 (798)
..++.+.+.++.|..... ..| ...+.++.+||.+|.|++ .+...+.+++.|+.|+++.|.+...+...-....+|+
T Consensus 45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR 124 (418)
T ss_pred cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence 345556666666543221 123 345788899999998874 2334456789999999999988743322113567899
Q ss_pred EEECcCCcCCCC-CccccccCCCCceeecCCCCcceEecCCccccccCCccccCCCCCCEEEcCCCCccc--cCCCCcCC
Q 038037 250 KLDLSQNRFFSE-LPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWG--KVPHSIGN 326 (798)
Q Consensus 250 ~L~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~--~~~~~~~~ 326 (798)
+|.|.+..+.-. ....+..+|.+++|.++.|.++.+.+..+.+... -+.++++.+..|.... .....-.-
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~-------s~~v~tlh~~~c~~~~w~~~~~l~r~ 197 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDW-------STEVLTLHQLPCLEQLWLNKNKLSRI 197 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhcccccccccc-------chhhhhhhcCCcHHHHHHHHHhHHhh
Confidence 999988877443 2345577899999999999888887776655431 1345566665554321 11111223
Q ss_pred CCCCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCcccCccchHHHhhcCCCCCeEEcccc
Q 038037 327 FTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSN 406 (798)
Q Consensus 327 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n 406 (798)
+|++..+.+..|.+....... ....++.+..|+++.+++.+....+ .+.+++.|..|.++++
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek-----------------~se~~p~~~~LnL~~~~idswasvD-~Ln~f~~l~dlRv~~~ 259 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEK-----------------GSEPFPSLSCLNLGANNIDSWASVD-ALNGFPQLVDLRVSEN 259 (418)
T ss_pred cccchheeeecCcccchhhcc-----------------cCCCCCcchhhhhcccccccHHHHH-HHcCCchhheeeccCC
Confidence 678888888888776433221 3445566667788888887766655 5788888888888888
Q ss_pred cccc
Q 038037 407 RLSL 410 (798)
Q Consensus 407 ~i~~ 410 (798)
++.+
T Consensus 260 Pl~d 263 (418)
T KOG2982|consen 260 PLSD 263 (418)
T ss_pred cccc
Confidence 7654
No 45
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.44 E-value=7.8e-09 Score=103.08 Aligned_cols=39 Identities=23% Similarity=0.215 Sum_probs=21.6
Q ss_pred CCCCCCEEecCCCcC-CCcccccc-cCCCCCCEEECcCCcC
Q 038037 220 NLHSLKELDLSANIL-SSELPTSI-GNLSSLKKLDLSQNRF 258 (798)
Q Consensus 220 ~l~~L~~L~L~~n~l-~~~~~~~~-~~l~~L~~L~L~~n~i 258 (798)
.+..|+.|+.+++.- ++..-.++ .+.++|+.|-++.|+.
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~ 332 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQ 332 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccch
Confidence 456677777766543 22111222 2467777777777753
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.40 E-value=6e-09 Score=110.54 Aligned_cols=84 Identities=37% Similarity=0.390 Sum_probs=35.8
Q ss_pred ccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCEEecCCCcCCCcccccccCCCCCC
Q 038037 170 LANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLK 249 (798)
Q Consensus 170 ~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 249 (798)
+.-++.++.|+|++|+++.+. .+..+++|++|||+.|.++.+.-.....++ |..|.+++|.++.. ..+.++.+|+
T Consensus 183 Lqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~ 257 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLY 257 (1096)
T ss_pred HHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhhhhh
Confidence 333444444444444444322 344444445555554444432222222222 44445544444321 2234444455
Q ss_pred EEECcCCcC
Q 038037 250 KLDLSQNRF 258 (798)
Q Consensus 250 ~L~L~~n~i 258 (798)
.||+++|-+
T Consensus 258 ~LDlsyNll 266 (1096)
T KOG1859|consen 258 GLDLSYNLL 266 (1096)
T ss_pred ccchhHhhh
Confidence 555555444
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=1.9e-07 Score=89.05 Aligned_cols=232 Identities=22% Similarity=0.246 Sum_probs=126.8
Q ss_pred CCcEEEccCCCCCCcc-chhcc-CCCCCCEEecCCCcCCC--cccccccCCCCCCEEECcCCcCCCCCccccccCCCCce
Q 038037 199 KLLHLDLSLNELRGEL-LVSIG-NLHSLKELDLSANILSS--ELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKV 274 (798)
Q Consensus 199 ~L~~L~Ls~n~i~~~~-~~~~~-~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 274 (798)
.++.|-+.++.|.... ...|+ .++.++++||.+|.|++ .+...+.++|.|+.|+++.|++...+...-....+|++
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 4445555566554322 12232 36778888888888874 23334557888888888888775443221124455655
Q ss_pred eecCCCCcceEecCCccccccCCccccCCCCCCEEEcCCCCccccCCCCcCCCCCCcEEeccCccCcCCcchhcccccCC
Q 038037 275 LDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSL 354 (798)
Q Consensus 275 L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 354 (798)
|-+.+..+..- ........+|.++.|.++.|.+. .+.+..+.+...
T Consensus 126 lVLNgT~L~w~---------~~~s~l~~lP~vtelHmS~N~~r--------------q~n~Dd~c~e~~----------- 171 (418)
T KOG2982|consen 126 LVLNGTGLSWT---------QSTSSLDDLPKVTELHMSDNSLR--------------QLNLDDNCIEDW----------- 171 (418)
T ss_pred EEEcCCCCChh---------hhhhhhhcchhhhhhhhccchhh--------------hhcccccccccc-----------
Confidence 55554332110 01112233444444444444221 111111111111
Q ss_pred cccccCCCChhhhcCCCCcEEeccCCcccCccchHHHhhcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCC
Q 038037 355 KALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLT 434 (798)
Q Consensus 355 ~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~ 434 (798)
-+.++++..-.|....-....-...-+|++..+.+..|++............+.+..|++..+++.
T Consensus 172 --------------s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~id 237 (418)
T KOG2982|consen 172 --------------STEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNID 237 (418)
T ss_pred --------------chhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccc
Confidence 112333333333322111111123456888888888888888777777777788888889888887
Q ss_pred Ccc--hhhhCCCCccEEECCCCcccCCCC----cccccccCcccceeeCC
Q 038037 435 EFP--NFLKNQHHLVILDLSANRIHGKIP----KWLLDPSMQYLNALNLS 478 (798)
Q Consensus 435 ~l~--~~~~~~~~L~~L~ls~n~i~~~~~----~~~~~~~l~~L~~L~ls 478 (798)
++. +.+..++.|..|.++++++..... ..+.-..+++++.|+=+
T Consensus 238 swasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 238 SWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred cHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 665 457888999999999998764332 22222355666665543
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=5.4e-08 Score=92.69 Aligned_cols=182 Identities=24% Similarity=0.176 Sum_probs=129.2
Q ss_pred CeEEEEEcCCCCccCcccCcccccccCCCCeEEcCCCCCCCCCCchhccCCCCCcEEEccCCC-CCCC-CchhhhcCCCC
Q 038037 43 GHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGAS-LSGQ-IPSEILEFSNL 120 (798)
Q Consensus 43 ~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~l~~~~~~l~~L~~L~Ls~~~-~~~~-~~~~~~~l~~L 120 (798)
.+++++|||...++..... ..+..|.+|+.|.+.+.++.+. +...+.+-.+|+.|+|+.|. ++.. ..--+..++.|
T Consensus 185 sRlq~lDLS~s~it~stl~-~iLs~C~kLk~lSlEg~~LdD~-I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L 262 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLH-GILSQCSKLKNLSLEGLRLDDP-IVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL 262 (419)
T ss_pred hhhHHhhcchhheeHHHHH-HHHHHHHhhhhccccccccCcH-HHHHHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence 4699999999888654322 1678899999999999999876 66778899999999999976 3311 12235789999
Q ss_pred cEEEccCCCCCCCccccCCCchHHHHh-cCCCCCEEEccCCccC---CCCchhccCCCCCCEEeccccc-cCccCccccc
Q 038037 121 VSLDLSLNDGPGGRLELQKPNLANLVE-KLSNLETLDLGDASIR---STIPHNLANLSSLSFVSLRNCE-LEGRILSSFG 195 (798)
Q Consensus 121 ~~L~l~~~~~~~~~~~~~~~~l~~~~~-~l~~L~~L~l~~~~~~---~~~~~~~~~l~~L~~L~l~~~~-l~~~~~~~~~ 195 (798)
..|+++.|......+. ..+. --++|+.|+++++.-. ..+..-...+++|.+|||++|. ++......|.
T Consensus 263 ~~LNlsWc~l~~~~Vt-------v~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~ 335 (419)
T KOG2120|consen 263 DELNLSWCFLFTEKVT-------VAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF 335 (419)
T ss_pred hhcCchHhhccchhhh-------HHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH
Confidence 9999999975443222 1222 2357888999887421 1122233578999999999875 5544456678
Q ss_pred CCCCCcEEEccCCCCCC-ccchhccCCCCCCEEecCCCc
Q 038037 196 NLSKLLHLDLSLNELRG-ELLVSIGNLHSLKELDLSANI 233 (798)
Q Consensus 196 ~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~n~ 233 (798)
+++.|++|.++.|.... ...-.+...+.|.+|++.++-
T Consensus 336 kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 336 KFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 89999999999886431 122235567899999998764
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.30 E-value=4.1e-07 Score=85.62 Aligned_cols=193 Identities=22% Similarity=0.235 Sum_probs=96.9
Q ss_pred cccccCCCCeEEcCCCCCCCCC---CchhccCCCCCcEEEccCCC---CCCCCc-------hhhhcCCCCcEEEccCCCC
Q 038037 64 SLFKLVHLEWLNLAFNDFNSSE---IPPEIINLLRLSYLNLSGAS---LSGQIP-------SEILEFSNLVSLDLSLNDG 130 (798)
Q Consensus 64 ~l~~~~~L~~L~L~~~~~~~~~---l~~~~~~l~~L~~L~Ls~~~---~~~~~~-------~~~~~l~~L~~L~l~~~~~ 130 (798)
.+..+..+..++||+|.|.... +...+.+-.+|++.+++.-- ..+.++ .++-+|++|+..++|.|.+
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 3444666666677776665431 22334445666666666521 112222 2344567777777777764
Q ss_pred CCCccccCCCchHHHHhcCCCCCEEEccCCccCCCCchhc-------------cCCCCCCEEeccccccCccCc----cc
Q 038037 131 PGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNL-------------ANLSSLSFVSLRNCELEGRIL----SS 193 (798)
Q Consensus 131 ~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~-------------~~l~~L~~L~l~~~~l~~~~~----~~ 193 (798)
.... +..+.+.+++-+.|.||.+++|.+.......+ ..-+.|++.....|++..... ..
T Consensus 105 g~~~----~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~ 180 (388)
T COG5238 105 GSEF----PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAAL 180 (388)
T ss_pred Cccc----chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHH
Confidence 3321 13455666677777777777776543222112 223556666666665542211 11
Q ss_pred ccCCCCCcEEEccCCCCCCccc-----hhccCCCCCCEEecCCCcCCCc----ccccccCCCCCCEEECcCCcCCC
Q 038037 194 FGNLSKLLHLDLSLNELRGELL-----VSIGNLHSLKELDLSANILSSE----LPTSIGNLSSLKKLDLSQNRFFS 260 (798)
Q Consensus 194 ~~~l~~L~~L~Ls~n~i~~~~~-----~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~i~~ 260 (798)
|..-..|+.+.+..|.|..... -.+..+++|+.||+..|.++-. +..++...+.|+.|.+.+|-++.
T Consensus 181 l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~ 256 (388)
T COG5238 181 LESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN 256 (388)
T ss_pred HHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence 2222456666666666553211 1123355666666666655421 22233334455566665555543
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.12 E-value=6e-08 Score=103.21 Aligned_cols=129 Identities=26% Similarity=0.300 Sum_probs=90.0
Q ss_pred CCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeC
Q 038037 538 TLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDL 617 (798)
Q Consensus 538 ~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L 617 (798)
.|.+.+.++|.+. ....++.-++ .|+.|+|++|+++.. +.+..++.|++|||++|.+..+..-...++. |+.|++
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~-ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLP-ALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHH-Hhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeee
Confidence 4666777777776 4445555555 688888888888755 3677788888888888888743322233455 888888
Q ss_pred CCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcC
Q 038037 618 GNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTG 674 (798)
Q Consensus 618 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~ 674 (798)
++|.++.. ..+.++.+|+-||++.|-+.+..... .+..+..|+.|+|.||++.+
T Consensus 240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~-pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELE-PLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhh-HHHHHHHHHHHhhcCCcccc
Confidence 88888754 34677888888888888876653322 23456778888888888863
No 51
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.99 E-value=7.8e-06 Score=74.03 Aligned_cols=131 Identities=21% Similarity=0.162 Sum_probs=96.0
Q ss_pred CCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCC
Q 038037 539 LKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLG 618 (798)
Q Consensus 539 L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~ 618 (798)
=+++++.+.++..+. .+..+.++...+|+++|.+... +.|..++.|..|.+++|+|+.+.|.--.-++.|+.|.|.
T Consensus 21 e~e~~LR~lkip~ie--nlg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIE--NLGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred ccccccccccccchh--hccccccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence 467777777776332 2344445688899999998643 568888999999999999998888766677889999999
Q ss_pred CCcCCccCC-cccCCCCCCCEEEccCcccccccCC-CCCcCCCCcccEEEccCCcCc
Q 038037 619 NNQISDTFP-SWLGTLPNLNVLILRSNTFYGIIKE-PRTDCGFSKLHIIDLSNNRFT 673 (798)
Q Consensus 619 ~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~~~~~~L~~L~ls~N~l~ 673 (798)
+|.|..... .-+..+|+|+.|.+-+|+++.-..- .+..+.+++|+.||.++-...
T Consensus 97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~ 153 (233)
T KOG1644|consen 97 NNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRK 153 (233)
T ss_pred CcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhHH
Confidence 998875422 3467789999999999998754211 123356789999998776543
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.96 E-value=5.9e-06 Score=56.37 Aligned_cols=38 Identities=32% Similarity=0.434 Sum_probs=25.4
Q ss_pred ceeEEEcCCCcccccCchhhhcccCCCeEeCcCCccccC
Q 038037 737 ILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGH 775 (798)
Q Consensus 737 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 775 (798)
.|++|++++|+|+.+. ..++++++|+.|++++|+|+.+
T Consensus 2 ~L~~L~l~~N~i~~l~-~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLP-PELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHG-GHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccC-chHhCCCCCCEEEecCCCCCCC
Confidence 5677777777777543 3577777777777777777643
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.92 E-value=5.2e-06 Score=78.37 Aligned_cols=148 Identities=21% Similarity=0.214 Sum_probs=87.3
Q ss_pred hhccCCCCCcEEEccCCCCCCCCchhhh----cCCCCcEEEccCCCCCC--CccccCCCchHHHHhcCCCCCEEEccCCc
Q 038037 88 PEIINLLRLSYLNLSGASLSGQIPSEIL----EFSNLVSLDLSLNDGPG--GRLELQKPNLANLVEKLSNLETLDLGDAS 161 (798)
Q Consensus 88 ~~~~~l~~L~~L~Ls~~~~~~~~~~~~~----~l~~L~~L~l~~~~~~~--~~~~~~~~~l~~~~~~l~~L~~L~l~~~~ 161 (798)
..+..+..+..++||+|.|......+++ +-++|++.+++.-.-.. ..+.-....+.+.+-+||+|+..++++|.
T Consensus 24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 3455688999999999998755555554 44788888887643000 00000001234556789999999999998
Q ss_pred cCCCCchh----ccCCCCCCEEeccccccCccCccccc-------------CCCCCcEEEccCCCCCCccc----hhccC
Q 038037 162 IRSTIPHN----LANLSSLSFVSLRNCELEGRILSSFG-------------NLSKLLHLDLSLNELRGELL----VSIGN 220 (798)
Q Consensus 162 ~~~~~~~~----~~~l~~L~~L~l~~~~l~~~~~~~~~-------------~l~~L~~L~Ls~n~i~~~~~----~~~~~ 220 (798)
+....|.. +++.+.|.+|.+++|.+......-++ +-|.|+......|++..-.. ..+..
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~s 183 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLES 183 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHh
Confidence 87665544 35568888888888876533222222 33556666666665542111 11222
Q ss_pred CCCCCEEecCCCcCC
Q 038037 221 LHSLKELDLSANILS 235 (798)
Q Consensus 221 l~~L~~L~L~~n~l~ 235 (798)
...|+++.+..|.|.
T Consensus 184 h~~lk~vki~qNgIr 198 (388)
T COG5238 184 HENLKEVKIQQNGIR 198 (388)
T ss_pred hcCceeEEeeecCcC
Confidence 345555555555543
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.91 E-value=3.7e-07 Score=76.82 Aligned_cols=107 Identities=26% Similarity=0.319 Sum_probs=50.2
Q ss_pred CCEEEeeCcccccccChhhhcccc--ccceeecCCCccccccccccc-cCCCccEEEcCCCcccccCCccccCCCCCcEE
Q 038037 539 LKNLVLSHNSLSGLLPQCLGNFSD--ELAVLDLQGNNFFGTIPDTFI-KESRLGVIDLSHNLFQGRIPRSLVNCSKLEFL 615 (798)
Q Consensus 539 L~~L~Ls~n~i~~~~~~~~~~~~~--~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L 615 (798)
+..++|+.|++. .+++....+.. .|+..+|++|.+... |..|. ..+.++.+++++|+|+ .+|..+..++.|+.|
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~f-p~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKF-PKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhC-CHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 344556666554 23332222211 244455555555532 22222 2335555555555555 344445555555555
Q ss_pred eCCCCcCCccCCcccCCCCCCCEEEccCcccccc
Q 038037 616 DLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGI 649 (798)
Q Consensus 616 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~ 649 (798)
+++.|.+. ..|..+..+.++-.|+..+|.+..+
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ei 138 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARAEI 138 (177)
T ss_pred ccccCccc-cchHHHHHHHhHHHhcCCCCccccC
Confidence 55555554 3444444455555555555554443
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.87 E-value=8.6e-07 Score=74.66 Aligned_cols=131 Identities=22% Similarity=0.207 Sum_probs=81.2
Q ss_pred CCcEEeCCCCcCCccC--CcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCChhhhhcchhch
Q 038037 611 KLEFLDLGNNQISDTF--PSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMK 688 (798)
Q Consensus 611 ~L~~L~L~~N~i~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~ 688 (798)
.+..++|+.|++-.+. +..+.....|+..+|++|.+..+++... ..++..+.+++++|.|. .+|.+ +..
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft--~kf~t~t~lNl~~neis-dvPeE-~Aa----- 98 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFT--IKFPTATTLNLANNEIS-DVPEE-LAA----- 98 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHh--hccchhhhhhcchhhhh-hchHH-Hhh-----
Confidence 4567788888764221 1234455667777888888776644332 34567778888888876 66665 222
Q ss_pred hccccccccccCCCCCCCCccccchhccccceeeeccCcccccCCccCceeEEEcCCCcccccCchhhhcccCCCeEeCc
Q 038037 689 IVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLD 768 (798)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 768 (798)
.+.|+.|+++.|.+. ..|+.+..|.+|-.||..
T Consensus 99 ----------------------------------------------m~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 99 ----------------------------------------------MPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred ----------------------------------------------hHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence 355677778888887 556666678888888888
Q ss_pred CCccccCCCccccCCCCCCeEeCCCCcCCC
Q 038037 769 NNNLQGHIPSCLGNLTNLESLDLSNNRFFF 798 (798)
Q Consensus 769 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 798 (798)
+|.+..+.-+.|. -+..-..++.+++|.|
T Consensus 132 ~na~~eid~dl~~-s~~~al~~lgnepl~~ 160 (177)
T KOG4579|consen 132 ENARAEIDVDLFY-SSLPALIKLGNEPLGD 160 (177)
T ss_pred CCccccCcHHHhc-cccHHHHHhcCCcccc
Confidence 8877655444332 1333334445565543
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.87 E-value=1e-05 Score=55.24 Aligned_cols=37 Identities=49% Similarity=0.675 Sum_probs=31.4
Q ss_pred cCCCeEeCcCCccccCCCccccCCCCCCeEeCCCCcCC
Q 038037 760 KGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFF 797 (798)
Q Consensus 760 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 797 (798)
++|++|++++|+|+.+ |..+++|++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~~l-~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITDL-PPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SSH-GGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCccc-CchHhCCCCCCEEEecCCCCC
Confidence 5799999999999965 556999999999999999986
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.86 E-value=7.2e-05 Score=77.49 Aligned_cols=34 Identities=26% Similarity=0.383 Sum_probs=17.8
Q ss_pred cccccceeecCCCccccccccccccCCCccEEEcCCC
Q 038037 560 FSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHN 596 (798)
Q Consensus 560 ~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N 596 (798)
+|.+|++|++++|... ..|..+. .+|+.|+++.+
T Consensus 154 LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 154 ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred cCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 3445666666666644 2232222 45666666554
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.66 E-value=2.1e-05 Score=88.78 Aligned_cols=151 Identities=23% Similarity=0.262 Sum_probs=87.6
Q ss_pred CCCCeEEcCCCCCCCCCCchhcc-CCCCCcEEEccCCCCCCC-CchhhhcCCCCcEEEccCCCCCCCccccCCCchHHHH
Q 038037 69 VHLEWLNLAFNDFNSSEIPPEII-NLLRLSYLNLSGASLSGQ-IPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLV 146 (798)
Q Consensus 69 ~~L~~L~L~~~~~~~~~l~~~~~-~l~~L~~L~Ls~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~ 146 (798)
.+|++|+++|........|..++ .+|.|+.|.+++-.+... .-....++++|+.||+|++++.. ..++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n----------l~GI 191 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN----------LSGI 191 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC----------cHHH
Confidence 46777777776544433455555 467777777777554311 12223456777777777776221 1466
Q ss_pred hcCCCCCEEEccCCccCC-CCchhccCCCCCCEEeccccccCccC------cccccCCCCCcEEEccCCCCCCccchhcc
Q 038037 147 EKLSNLETLDLGDASIRS-TIPHNLANLSSLSFVSLRNCELEGRI------LSSFGNLSKLLHLDLSLNELRGELLVSIG 219 (798)
Q Consensus 147 ~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~l~~~~------~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~ 219 (798)
+.+++|++|.+.+-.+.. ..-..+-.+++|++||+|........ ...-..+|+|+.||.|++.+.......+.
T Consensus 192 S~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll 271 (699)
T KOG3665|consen 192 SRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELL 271 (699)
T ss_pred hccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHH
Confidence 777777777776655543 22234556777777777765433221 11223578999999998888754443332
Q ss_pred -CCCCCCEEec
Q 038037 220 -NLHSLKELDL 229 (798)
Q Consensus 220 -~l~~L~~L~L 229 (798)
..++|+.+..
T Consensus 272 ~sH~~L~~i~~ 282 (699)
T KOG3665|consen 272 NSHPNLQQIAA 282 (699)
T ss_pred HhCccHhhhhh
Confidence 3455555443
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.66 E-value=7.4e-05 Score=67.85 Aligned_cols=107 Identities=26% Similarity=0.238 Sum_probs=83.1
Q ss_pred cceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccC
Q 038037 564 LAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRS 643 (798)
Q Consensus 564 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~ 643 (798)
=+++++.+.++..+.. .=........+||++|.+... ..|..++.|.+|.|++|+|+.+.|.--.-+++|+.|.|.+
T Consensus 21 e~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred ccccccccccccchhh-ccccccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence 4567777777753322 111245678899999999743 4688899999999999999998887767788999999999
Q ss_pred cccccccCCCCCcCCCCcccEEEccCCcCcC
Q 038037 644 NTFYGIIKEPRTDCGFSKLHIIDLSNNRFTG 674 (798)
Q Consensus 644 N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~ 674 (798)
|+|..+... .....+++|++|.+-+|+.+.
T Consensus 98 Nsi~~l~dl-~pLa~~p~L~~Ltll~Npv~~ 127 (233)
T KOG1644|consen 98 NSIQELGDL-DPLASCPKLEYLTLLGNPVEH 127 (233)
T ss_pred cchhhhhhc-chhccCCccceeeecCCchhc
Confidence 999876432 245678999999999999873
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.66 E-value=2.4e-05 Score=88.35 Aligned_cols=199 Identities=27% Similarity=0.300 Sum_probs=130.7
Q ss_pred eEEEEEcCCCCccCcccCcccccccCCCCeEEcCCCCCCCCC--------Cchhcc------CCCCCcEEEccCCCC-CC
Q 038037 44 HVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSE--------IPPEII------NLLRLSYLNLSGASL-SG 108 (798)
Q Consensus 44 ~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~--------l~~~~~------~l~~L~~L~Ls~~~~-~~ 108 (798)
+++++++.+......... .+.+.. |+.|.+.+....... +...+. .-.+|++|++++... ..
T Consensus 61 ~ltki~l~~~~~~~~~~~--~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~ 137 (699)
T KOG3665|consen 61 NLTKIDLKNVTLQHQTLE--MLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSN 137 (699)
T ss_pred eeEEeeccceecchhHHH--HHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhc
Confidence 577777777665443322 444444 777777764322110 001111 136899999999653 33
Q ss_pred CCchhhh-cCCCCcEEEccCCCCCCCccccCCCchHHHHhcCCCCCEEEccCCccCCCCchhccCCCCCCEEeccccccC
Q 038037 109 QIPSEIL-EFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELE 187 (798)
Q Consensus 109 ~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 187 (798)
..|..++ .+|.|+.|.+++-.+ ....+.....++++|..||++++.++.. ..++.+++|++|.+.+-.+.
T Consensus 138 ~W~~kig~~LPsL~sL~i~~~~~-------~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e 208 (699)
T KOG3665|consen 138 GWPKKIGTMLPSLRSLVISGRQF-------DNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFE 208 (699)
T ss_pred cHHHHHhhhCcccceEEecCcee-------cchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCC
Confidence 4455554 479999999998652 2244667888999999999999999755 67899999999999887665
Q ss_pred c-cCcccccCCCCCcEEEccCCCCCCcc------chhccCCCCCCEEecCCCcCCCcccccc-cCCCCCCEEECc
Q 038037 188 G-RILSSFGNLSKLLHLDLSLNELRGEL------LVSIGNLHSLKELDLSANILSSELPTSI-GNLSSLKKLDLS 254 (798)
Q Consensus 188 ~-~~~~~~~~l~~L~~L~Ls~n~i~~~~------~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~ 254 (798)
. .....+..+++|+.||+|........ .+.-..+++|+.||.|+..+....-+.+ ..-++|+.+..-
T Consensus 209 ~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 209 SYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAAL 283 (699)
T ss_pred chhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhh
Confidence 3 23345678999999999987554322 1112348999999999887775433322 234555555443
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.65 E-value=0.00017 Score=74.71 Aligned_cols=35 Identities=20% Similarity=0.319 Sum_probs=27.0
Q ss_pred ccCceeEEEcCCCcccccCchhhhcccCCCeEeCcCCc
Q 038037 734 IPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNN 771 (798)
Q Consensus 734 ~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 771 (798)
+|++|+.|+++++... ..|+.+. .+|+.|+++.|.
T Consensus 154 LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 154 ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred cCCcccEEEecCCCcc-cCccccc--ccCcEEEecccc
Confidence 4789999999998876 3444444 599999998874
No 62
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.63 E-value=3.8e-06 Score=84.38 Aligned_cols=85 Identities=27% Similarity=0.208 Sum_probs=43.1
Q ss_pred CCCEEEcCCCCcccc--CCCCcCCCCCCcEEeccCccC-cCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCc
Q 038037 305 SLKILDLRSCSFWGK--VPHSIGNFTRLQLLYLTFNNF-SGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNS 381 (798)
Q Consensus 305 ~L~~L~L~~n~~~~~--~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~ 381 (798)
.|+.|.+.++.-.+. .......+|++++|.+.++.. ++..... .-..+++|+.+++..|.
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~s-----------------la~~C~~l~~l~L~~c~ 201 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLS-----------------LARYCRKLRHLNLHSCS 201 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHH-----------------HHHhcchhhhhhhcccc
Confidence 455555655543221 112334567777777777652 2221111 12345566666666654
Q ss_pred ccCccchHHHhhcCCCCCeEEcccc
Q 038037 382 YRGMIELDFLLTSLKNLEALVLSSN 406 (798)
Q Consensus 382 l~~~~~~~~~~~~l~~L~~L~l~~n 406 (798)
............+|++|++++++.|
T Consensus 202 ~iT~~~Lk~la~gC~kL~~lNlSwc 226 (483)
T KOG4341|consen 202 SITDVSLKYLAEGCRKLKYLNLSWC 226 (483)
T ss_pred hhHHHHHHHHHHhhhhHHHhhhccC
Confidence 3333333334456777777777666
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.51 E-value=0.00017 Score=63.82 Aligned_cols=105 Identities=16% Similarity=0.276 Sum_probs=37.1
Q ss_pred cccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCC
Q 038037 532 WICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSK 611 (798)
Q Consensus 532 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~ 611 (798)
.|.++++|+.+.+.. .+..+...+|.++. +|+.+.+.++ +..+...+|.++++++.+.+.+ .+......+|..+++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~-~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCT-SLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-T-T-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccc-cccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 445555555555543 33333344444443 3444444443 3334444444444444444433 222233334444444
Q ss_pred CcEEeCCCCcCCccCCcccCCCCCCCEEEcc
Q 038037 612 LEFLDLGNNQISDTFPSWLGTLPNLNVLILR 642 (798)
Q Consensus 612 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~ 642 (798)
|+.+++..+ +..+....|.+. .|+.+.+.
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 444444433 333333344443 44444443
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.42 E-value=0.00048 Score=60.99 Aligned_cols=124 Identities=18% Similarity=0.229 Sum_probs=71.4
Q ss_pred ChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCC
Q 038037 554 PQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTL 633 (798)
Q Consensus 554 ~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l 633 (798)
..+|.++. +|+.+.+.. .+..+...+|.++++|+.+.+.++ +..+...+|.++++|+.+.+.+ .+.......|..+
T Consensus 5 ~~~F~~~~-~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 5 NNAFYNCS-NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC 80 (129)
T ss_dssp TTTTTT-T-T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred HHHHhCCC-CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccc
Confidence 34566665 688888875 577777888999989999999886 7767777888988899999976 5555667788889
Q ss_pred CCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCChhhhhcchhc
Q 038037 634 PNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAM 687 (798)
Q Consensus 634 ~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l 687 (798)
++|+.+.+..+ +..+....+ .+. .|+.+.+.. .+. .++...|.+..+|
T Consensus 81 ~~l~~i~~~~~-~~~i~~~~f--~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~l 128 (129)
T PF13306_consen 81 TNLKNIDIPSN-ITEIGSSSF--SNC-NLKEINIPS-NIT-KIEENAFKNCTKL 128 (129)
T ss_dssp TTECEEEETTT--BEEHTTTT--TT--T--EEE-TT-B-S-S----GGG-----
T ss_pred ccccccccCcc-ccEEchhhh--cCC-CceEEEECC-Ccc-EECCccccccccC
Confidence 99999999776 666654443 555 888888876 343 5666666554433
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.80 E-value=0.00076 Score=64.33 Aligned_cols=84 Identities=26% Similarity=0.285 Sum_probs=36.5
Q ss_pred cCCCCcEEeccCCcccCccchHHHhhcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcc----hhhhCC
Q 038037 368 NLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFP----NFLKNQ 443 (798)
Q Consensus 368 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~----~~~~~~ 443 (798)
.+++|++|.++.|.........+....+|+|+++.+++|+|..+..........+|..|++.+|..+.+- ..+.-+
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll 142 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLL 142 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHh
Confidence 3444555555555332222222233444555555555555554433333333344444444444443322 123444
Q ss_pred CCccEEEC
Q 038037 444 HHLVILDL 451 (798)
Q Consensus 444 ~~L~~L~l 451 (798)
++|++||-
T Consensus 143 ~~L~~LD~ 150 (260)
T KOG2739|consen 143 PSLKYLDG 150 (260)
T ss_pred hhhccccc
Confidence 55555443
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.71 E-value=0.00071 Score=64.54 Aligned_cols=64 Identities=27% Similarity=0.270 Sum_probs=25.4
Q ss_pred CCCccEEEcCCC--cccccCCccccCCCCCcEEeCCCCcCCccC-CcccCCCCCCCEEEccCccccc
Q 038037 585 ESRLGVIDLSHN--LFQGRIPRSLVNCSKLEFLDLGNNQISDTF-PSWLGTLPNLNVLILRSNTFYG 648 (798)
Q Consensus 585 l~~L~~L~Ls~N--~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~L~~N~l~~ 648 (798)
+++|+.|.++.| ++.+.++.....+++|++|++++|+|..+. -..+..+.+|.+|++.+|..+.
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccc
Confidence 344444444444 333222222233344444444444443110 0112333444455555554433
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.70 E-value=5.4e-05 Score=72.02 Aligned_cols=81 Identities=28% Similarity=0.326 Sum_probs=40.8
Q ss_pred cceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCC-cccCCCCCCCEEEcc
Q 038037 564 LAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFP-SWLGTLPNLNVLILR 642 (798)
Q Consensus 564 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~L~ 642 (798)
.+.|++.++.+..+ .....|+.|++|.||=|+|+..- .|..|+.|++|+|..|.|..+.. ..+.++|+|+.|.|.
T Consensus 21 vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 21 VKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred hhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 44455555554432 23344555555555555555332 24555556666666555543221 234455556666665
Q ss_pred Cccccc
Q 038037 643 SNTFYG 648 (798)
Q Consensus 643 ~N~l~~ 648 (798)
.|+-.+
T Consensus 97 ENPCc~ 102 (388)
T KOG2123|consen 97 ENPCCG 102 (388)
T ss_pred cCCccc
Confidence 555433
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.66 E-value=0.00015 Score=69.01 Aligned_cols=79 Identities=24% Similarity=0.177 Sum_probs=46.6
Q ss_pred CeEEEEEcCCCCccCcccCcccccccCCCCeEEcCCCCCCCCCCchhccCCCCCcEEEccCCCCCCCCch--hhhcCCCC
Q 038037 43 GHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPS--EILEFSNL 120 (798)
Q Consensus 43 ~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~--~~~~l~~L 120 (798)
..|++|+.+||.+.+.. ...+|+.|++|.|+-|.++.. ..+.+|++|++|+|+.|.|. .+.+ .+.++++|
T Consensus 19 ~~vkKLNcwg~~L~DIs----ic~kMp~lEVLsLSvNkIssL---~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsL 90 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDIS----ICEKMPLLEVLSLSVNKISSL---APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSL 90 (388)
T ss_pred HHhhhhcccCCCccHHH----HHHhcccceeEEeeccccccc---hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchh
Confidence 35666777777665432 335666777777776666542 45666666777777666654 2221 23456666
Q ss_pred cEEEccCCC
Q 038037 121 VSLDLSLND 129 (798)
Q Consensus 121 ~~L~l~~~~ 129 (798)
++|.|..|.
T Consensus 91 r~LWL~ENP 99 (388)
T KOG2123|consen 91 RTLWLDENP 99 (388)
T ss_pred hhHhhccCC
Confidence 666666554
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.65 E-value=0.00034 Score=78.12 Aligned_cols=237 Identities=24% Similarity=0.161 Sum_probs=108.0
Q ss_pred HhcCCCCCEEEccCCccCCC--CchhccCCCCCCEEecccc-c-cCccC---cccccCCCCCcEEEccCCC-CCCccchh
Q 038037 146 VEKLSNLETLDLGDASIRST--IPHNLANLSSLSFVSLRNC-E-LEGRI---LSSFGNLSKLLHLDLSLNE-LRGELLVS 217 (798)
Q Consensus 146 ~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~-~-l~~~~---~~~~~~l~~L~~L~Ls~n~-i~~~~~~~ 217 (798)
...++.|+.|.+.++.-... .......++.|+.|+++++ . +.... ......+++|+.|+++++. +++.....
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 33466777777666543222 1233445667777777652 1 11110 1123345667777777666 55444444
Q ss_pred ccC-CCCCCEEecCCCc-CCCccc-ccccCCCCCCEEECcCCcCCCC--CccccccCCCCceeecCCCCcceEecCCccc
Q 038037 218 IGN-LHSLKELDLSANI-LSSELP-TSIGNLSSLKKLDLSQNRFFSE--LPTSIGNLGSLKVLDLSRNGLFELHLSFNKF 292 (798)
Q Consensus 218 ~~~-l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~ 292 (798)
+.. +++|++|.+.++. +++..- .....++.|++|++++|..... .......+++++.|.+....
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~----------- 332 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN----------- 332 (482)
T ss_pred HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC-----------
Confidence 433 6677777766665 443221 2223466677777776654311 11223335555444332211
Q ss_pred cccCCccccCCCCCCEEEcCCCCcc---ccCCCCcCCCCCCcEEeccCccCcCCc-chhcccccCCcccccCCCChhhhc
Q 038037 293 SGEFPWSTRNFSSLKILDLRSCSFW---GKVPHSIGNFTRLQLLYLTFNNFSGDL-LGSIGNLRSLKALHVGQIPSSLRN 368 (798)
Q Consensus 293 ~~~~~~~~~~l~~L~~L~L~~n~~~---~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~l~l~~~~~~~~~ 368 (798)
.++.++.+.+..+... .........+++++.+.+..+...... ...+..++.+. ..+ ......
T Consensus 333 ---------~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l---~~~~~~ 399 (482)
T KOG1947|consen 333 ---------GCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESL---ELRLCR 399 (482)
T ss_pred ---------CCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHH---HHHhcc
Confidence 1223333333322211 111223455677777777776643332 23333333331 111 001112
Q ss_pred CCCCcEEeccCCcccCccchHHHhhcCCCCCeEEcccc
Q 038037 369 LTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSN 406 (798)
Q Consensus 369 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n 406 (798)
...++.|+++.+..............+..++.+++.++
T Consensus 400 ~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~ 437 (482)
T KOG1947|consen 400 SDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGC 437 (482)
T ss_pred CCccceEecccCccccccchHHHhhhhhccccCCccCc
Confidence 22267777777765544333221111444555555544
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.59 E-value=0.00056 Score=76.39 Aligned_cols=135 Identities=24% Similarity=0.198 Sum_probs=78.6
Q ss_pred cccCCCCeEEcCCCCC-CCCCCchhccCCCCCcEEEccCC-CCCCCCc----hhhhcCCCCcEEEccCCCCCCCccccCC
Q 038037 66 FKLVHLEWLNLAFNDF-NSSEIPPEIINLLRLSYLNLSGA-SLSGQIP----SEILEFSNLVSLDLSLNDGPGGRLELQK 139 (798)
Q Consensus 66 ~~~~~L~~L~L~~~~~-~~~~l~~~~~~l~~L~~L~Ls~~-~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 139 (798)
..++.|+.|.+.++.- ....+......+++|+.|+++++ ......+ .....+++|+.|+++++.. +.+
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~------isd 258 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGL------VTD 258 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhc------cCc
Confidence 3478888888887743 32222344557888888888873 2211222 2234467888888888751 223
Q ss_pred CchHHHHhcCCCCCEEEccCCc-cCCCCchh-ccCCCCCCEEeccccccC-cc-CcccccCCCCCcEEEcc
Q 038037 140 PNLANLVEKLSNLETLDLGDAS-IRSTIPHN-LANLSSLSFVSLRNCELE-GR-ILSSFGNLSKLLHLDLS 206 (798)
Q Consensus 140 ~~l~~~~~~l~~L~~L~l~~~~-~~~~~~~~-~~~l~~L~~L~l~~~~l~-~~-~~~~~~~l~~L~~L~Ls 206 (798)
..+......|++|++|.+.+|. ++...-.. ...++.|++|+++.+... .. .......+++|+.|.+.
T Consensus 259 ~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 259 IGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL 329 (482)
T ss_pred hhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence 4455555558888888877776 44432222 345677888888877643 11 11223345666555443
No 71
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=95.64 E-value=0.0051 Score=41.81 Aligned_cols=34 Identities=38% Similarity=0.813 Sum_probs=21.5
Q ss_pred ccccccccCcCCCCCCCCCCCCCCCCCCCceeeeeEec
Q 038037 2 HINRDLDAWKFDCRPKAASWKPEEGDVDCCSWDGVHCD 39 (798)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~w~~~~~~ 39 (798)
.||+.+..++. ....+|.... ..++|.|.||.|+
T Consensus 10 ~~k~~l~~~~~---~~l~~W~~~~-~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 10 AFKKSLNNDPS---GVLSSWNPSS-DSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHCTT-SC----CCCTT--TT---S-CCCSTTEEE-
T ss_pred HHHHhcccccC---cccccCCCcC-CCCCeeeccEEeC
Confidence 47788886553 5899999831 2799999999994
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.33 E-value=0.0058 Score=34.45 Aligned_cols=21 Identities=48% Similarity=0.755 Sum_probs=11.3
Q ss_pred CCCeEeCcCCccccCCCccccC
Q 038037 761 GLQVLNLDNNNLQGHIPSCLGN 782 (798)
Q Consensus 761 ~L~~L~Ls~N~l~~~~p~~~~~ 782 (798)
+|++|||++|+++ .+|..|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 3566666666666 33433543
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.04 E-value=0.027 Score=31.70 Aligned_cols=11 Identities=36% Similarity=0.401 Sum_probs=4.5
Q ss_pred cEEEcCCCccc
Q 038037 589 GVIDLSHNLFQ 599 (798)
Q Consensus 589 ~~L~Ls~N~i~ 599 (798)
++||+++|+++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 34444444443
No 74
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.84 E-value=0.041 Score=32.49 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=17.4
Q ss_pred ccCCCeEeCcCCccccCCCcccc
Q 038037 759 LKGLQVLNLDNNNLQGHIPSCLG 781 (798)
Q Consensus 759 l~~L~~L~Ls~N~l~~~~p~~~~ 781 (798)
+++|++|+|++|+|+.++++.|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 46788888888888877766664
No 75
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.84 E-value=0.041 Score=32.49 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=17.4
Q ss_pred ccCCCeEeCcCCccccCCCcccc
Q 038037 759 LKGLQVLNLDNNNLQGHIPSCLG 781 (798)
Q Consensus 759 l~~L~~L~Ls~N~l~~~~p~~~~ 781 (798)
+++|++|+|++|+|+.++++.|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 46788888888888877766664
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.06 E-value=0.0024 Score=69.15 Aligned_cols=186 Identities=26% Similarity=0.286 Sum_probs=103.8
Q ss_pred CCeEEcCCCCCCCCC---CchhccCCCCCcEEEccCCCCCCCCchhhh----cC-CCCcEEEccCCCCCCCccccCCCch
Q 038037 71 LEWLNLAFNDFNSSE---IPPEIINLLRLSYLNLSGASLSGQIPSEIL----EF-SNLVSLDLSLNDGPGGRLELQKPNL 142 (798)
Q Consensus 71 L~~L~L~~~~~~~~~---l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~----~l-~~L~~L~l~~~~~~~~~~~~~~~~l 142 (798)
+..|.|.+|.+.... +...+.....|..|++++|.+.+..-..+. .. ..+++|++..|.+..... ..+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~----~~l 164 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGA----APL 164 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccch----HHH
Confidence 566666666655431 123344556666677776666532222221 11 235556665555433221 344
Q ss_pred HHHHhcCCCCCEEEccCCccCC----CCchhc----cCCCCCCEEeccccccCccCc----ccccCCCC-CcEEEccCCC
Q 038037 143 ANLVEKLSNLETLDLGDASIRS----TIPHNL----ANLSSLSFVSLRNCELEGRIL----SSFGNLSK-LLHLDLSLNE 209 (798)
Q Consensus 143 ~~~~~~l~~L~~L~l~~~~~~~----~~~~~~----~~l~~L~~L~l~~~~l~~~~~----~~~~~l~~-L~~L~Ls~n~ 209 (798)
...+.....++.++++.|.+.. ..+..+ ....++++|++++|.++.... ..+...+. +..|++..|.
T Consensus 165 ~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~ 244 (478)
T KOG4308|consen 165 AAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNK 244 (478)
T ss_pred HHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcC
Confidence 5555556666666666666531 112222 235677777777777653211 22344455 6668888887
Q ss_pred CCCccc----hhccCC-CCCCEEecCCCcCCCccc----ccccCCCCCCEEECcCCcCCC
Q 038037 210 LRGELL----VSIGNL-HSLKELDLSANILSSELP----TSIGNLSSLKKLDLSQNRFFS 260 (798)
Q Consensus 210 i~~~~~----~~~~~l-~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~i~~ 260 (798)
+.+... ..+..+ ..+++++++.|.++.... ..+..++.++.+.++.|.+..
T Consensus 245 l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 245 LGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred cchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 765422 223334 567888888888875433 344567788888888888743
No 77
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.82 E-value=0.0018 Score=70.09 Aligned_cols=36 Identities=39% Similarity=0.373 Sum_probs=20.1
Q ss_pred CCEEeccccccCccCc----ccccCCCCCcEEEccCCCCC
Q 038037 176 LSFVSLRNCELEGRIL----SSFGNLSKLLHLDLSLNELR 211 (798)
Q Consensus 176 L~~L~l~~~~l~~~~~----~~~~~l~~L~~L~Ls~n~i~ 211 (798)
+..+.+.+|.+..... .++...+.|+.|++++|.+.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~ 128 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG 128 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc
Confidence 5666666666654322 22344556666666666655
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.63 E-value=0.21 Score=25.98 Aligned_cols=14 Identities=29% Similarity=0.444 Sum_probs=5.1
Q ss_pred ccEEeeCCCCCCCc
Q 038037 423 FRYVGLRSCNLTEF 436 (798)
Q Consensus 423 L~~L~l~~~~l~~l 436 (798)
|+.|++++|+++++
T Consensus 3 L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 3 LRTLDLSNNRLTSL 16 (17)
T ss_dssp -SEEEETSS--SSE
T ss_pred cCEEECCCCCCCCC
Confidence 44444444444443
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.57 E-value=0.044 Score=50.46 Aligned_cols=82 Identities=22% Similarity=0.154 Sum_probs=38.9
Q ss_pred eEEEEEcCCCCccCcccCcccccccCCCCeEEcCCCCCCCCCCchhcc-CCCCCcEEEccCCC-CCCCCchhhhcCCCCc
Q 038037 44 HVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEII-NLLRLSYLNLSGAS-LSGQIPSEILEFSNLV 121 (798)
Q Consensus 44 ~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~l~~~~~-~l~~L~~L~Ls~~~-~~~~~~~~~~~l~~L~ 121 (798)
.|+.+|-+++.+..+.-. .+..++.++.|.+.+|..-+.--.+.++ -.++|+.|++++|. |++..-..+..+++|+
T Consensus 102 ~IeaVDAsds~I~~eGle--~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLE--HLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred eEEEEecCCchHHHHHHH--HHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 456666666665444333 4555556666666555422210111122 23555555555553 4433333444555555
Q ss_pred EEEccC
Q 038037 122 SLDLSL 127 (798)
Q Consensus 122 ~L~l~~ 127 (798)
.|.+.+
T Consensus 180 ~L~l~~ 185 (221)
T KOG3864|consen 180 RLHLYD 185 (221)
T ss_pred HHHhcC
Confidence 555443
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.56 E-value=0.21 Score=29.42 Aligned_cols=19 Identities=47% Similarity=0.588 Sum_probs=9.3
Q ss_pred CCCcEEeCCCCcCCccCCc
Q 038037 610 SKLEFLDLGNNQISDTFPS 628 (798)
Q Consensus 610 ~~L~~L~L~~N~i~~~~~~ 628 (798)
++|++|+|++|+|+.+.+.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 3455555555555544333
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.56 E-value=0.21 Score=29.42 Aligned_cols=19 Identities=47% Similarity=0.588 Sum_probs=9.3
Q ss_pred CCCcEEeCCCCcCCccCCc
Q 038037 610 SKLEFLDLGNNQISDTFPS 628 (798)
Q Consensus 610 ~~L~~L~L~~N~i~~~~~~ 628 (798)
++|++|+|++|+|+.+.+.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 3455555555555544333
No 82
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=82.15 E-value=0.97 Score=26.57 Aligned_cols=17 Identities=29% Similarity=0.497 Sum_probs=12.7
Q ss_pred ccCCCeEeCcCCccccC
Q 038037 759 LKGLQVLNLDNNNLQGH 775 (798)
Q Consensus 759 l~~L~~L~Ls~N~l~~~ 775 (798)
+++|+.|+|++|+|+.+
T Consensus 1 L~~L~~L~L~~NkI~~I 17 (26)
T smart00365 1 LTNLEELDLSQNKIKKI 17 (26)
T ss_pred CCccCEEECCCCcccee
Confidence 45788888888888643
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=81.77 E-value=0.082 Score=49.64 Aligned_cols=87 Identities=18% Similarity=0.170 Sum_probs=51.1
Q ss_pred ccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCC
Q 038037 533 ICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKL 612 (798)
Q Consensus 533 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L 612 (798)
+..+...+.||++.|++-.. ...|.-+. .+..|+++.|.|. ..|..+.....++.+++.+|..+ ..|..+...+.+
T Consensus 38 i~~~kr~tvld~~s~r~vn~-~~n~s~~t-~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNL-GKNFSILT-RLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhccceeeeehhhhhHHHhh-ccchHHHH-HHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 44455666777777765422 22233333 4666666666665 44556666666666666666665 456666666666
Q ss_pred cEEeCCCCcCC
Q 038037 613 EFLDLGNNQIS 623 (798)
Q Consensus 613 ~~L~L~~N~i~ 623 (798)
+++++.+|.+.
T Consensus 114 k~~e~k~~~~~ 124 (326)
T KOG0473|consen 114 KKNEQKKTEFF 124 (326)
T ss_pred chhhhccCcch
Confidence 66666666543
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=81.10 E-value=0.058 Score=50.63 Aligned_cols=83 Identities=22% Similarity=0.252 Sum_probs=62.4
Q ss_pred ccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEcc
Q 038037 563 ELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILR 642 (798)
Q Consensus 563 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~ 642 (798)
..+.||++.|++.. ...-|+-++.|..||++.|.+. ..|..+.....+..+++..|..+ ..|.+++..+.++.+++.
T Consensus 43 r~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k 119 (326)
T KOG0473|consen 43 RVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQK 119 (326)
T ss_pred eeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhc
Confidence 57788888888763 3445777778888888888887 56777777777778888888776 567778888888888888
Q ss_pred Cccccc
Q 038037 643 SNTFYG 648 (798)
Q Consensus 643 ~N~l~~ 648 (798)
.|.+..
T Consensus 120 ~~~~~~ 125 (326)
T KOG0473|consen 120 KTEFFR 125 (326)
T ss_pred cCcchH
Confidence 877543
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.95 E-value=0.36 Score=44.68 Aligned_cols=61 Identities=23% Similarity=0.175 Sum_probs=33.3
Q ss_pred CCCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCcccCccchHHHhhcCCCCCeEEcccc
Q 038037 328 TRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSN 406 (798)
Q Consensus 328 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n 406 (798)
..++.++-++..|..+... .+.+++.++.|.+.+|...+.....+.-.-.++|+.|++++|
T Consensus 101 ~~IeaVDAsds~I~~eGle------------------~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC 161 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLE------------------HLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGC 161 (221)
T ss_pred ceEEEEecCCchHHHHHHH------------------HHhccchhhhheeccccchhhHHHHHhcccccchheeeccCC
Confidence 4466677776666654444 344455555566666655444444433334456666666655
No 86
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=78.75 E-value=0.55 Score=26.93 Aligned_cols=15 Identities=33% Similarity=0.494 Sum_probs=7.7
Q ss_pred CCCCEEEeeCccccc
Q 038037 537 NTLKNLVLSHNSLSG 551 (798)
Q Consensus 537 ~~L~~L~Ls~n~i~~ 551 (798)
++|++|+|++|+|++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 456666666666654
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=71.33 E-value=3.2 Score=24.88 Aligned_cols=13 Identities=54% Similarity=0.841 Sum_probs=7.4
Q ss_pred CCCCeEeCCCCcC
Q 038037 784 TNLESLDLSNNRF 796 (798)
Q Consensus 784 ~~L~~L~Ls~N~l 796 (798)
++|+.|||++|.+
T Consensus 2 ~~L~~LdL~~N~i 14 (28)
T smart00368 2 PSLRELDLSNNKL 14 (28)
T ss_pred CccCEEECCCCCC
Confidence 3455666666655
No 88
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=66.56 E-value=3.8 Score=24.03 Aligned_cols=18 Identities=17% Similarity=0.421 Sum_probs=11.3
Q ss_pred cCccEEeeCCCCCCCcch
Q 038037 421 QKFRYVGLRSCNLTEFPN 438 (798)
Q Consensus 421 ~~L~~L~l~~~~l~~l~~ 438 (798)
+.|++|++++|+++++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 356666666666666665
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=62.09 E-value=36 Score=36.33 Aligned_cols=38 Identities=16% Similarity=0.095 Sum_probs=20.6
Q ss_pred CCCEEEcCCCCccccC---CCCcCCCCCCcEEeccCccCcC
Q 038037 305 SLKILDLRSCSFWGKV---PHSIGNFTRLQLLYLTFNNFSG 342 (798)
Q Consensus 305 ~L~~L~L~~n~~~~~~---~~~~~~l~~L~~L~l~~n~l~~ 342 (798)
-+..+.++.|...... ......-+.+..|++++|...+
T Consensus 414 ~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd 454 (553)
T KOG4242|consen 414 VLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGD 454 (553)
T ss_pred cccCcccCCCcccccHHHHHHhhccCcccccccccCCCccc
Confidence 3555666666553211 1223345667777777776553
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=52.63 E-value=8.2 Score=41.76 Aligned_cols=66 Identities=24% Similarity=0.252 Sum_probs=44.1
Q ss_pred hcCCCCcEEeccCCcccCccchHHHhhcCCCCCeEEcccc--cccccccCCCCCCccCccEEeeCCCCC
Q 038037 367 RNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSN--RLSLLTKATSNTTSQKFRYVGLRSCNL 433 (798)
Q Consensus 367 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n--~i~~~~~~~~~~~~~~L~~L~l~~~~l 433 (798)
.+.+.+..+.+++|++..+..........|+|+.|+|++| .+....+. .......|++|-+.+|.+
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el-~K~k~l~Leel~l~GNPl 282 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESEL-DKLKGLPLEELVLEGNPL 282 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhh-hhhcCCCHHHeeecCCcc
Confidence 4566788888999998877766656677888999999988 33322211 111234567777777766
No 91
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=48.71 E-value=9.4 Score=49.80 Aligned_cols=32 Identities=34% Similarity=0.370 Sum_probs=23.6
Q ss_pred eCCCCcCCccCCcccCCCCCCCEEEccCcccc
Q 038037 616 DLGNNQISDTFPSWLGTLPNLNVLILRSNTFY 647 (798)
Q Consensus 616 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~ 647 (798)
||++|+|+.+.+..|..+++|+.|+|++|++.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57778887777777777777777777777653
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=36.85 E-value=26 Score=38.15 Aligned_cols=65 Identities=26% Similarity=0.204 Sum_probs=34.0
Q ss_pred CCCCCcEEEccCCCCCCC--CchhhhcCCCCcEEEccCCCCCCCccccCCCchHHHHh--cCCCCCEEEccCCccCC
Q 038037 92 NLLRLSYLNLSGASLSGQ--IPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVE--KLSNLETLDLGDASIRS 164 (798)
Q Consensus 92 ~l~~L~~L~Ls~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~--~l~~L~~L~l~~~~~~~ 164 (798)
+.+.+..++|++|++... +..--...++|+.|+|++|.. . ......+. +...|++|-+.+|.+..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~-----~---~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHS-----K---ISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchh-----h---hcchhhhhhhcCCCHHHeeecCCcccc
Confidence 456677777777775411 111112346777777777720 0 11111122 23457777777777653
No 93
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=31.44 E-value=33 Score=19.95 Aligned_cols=11 Identities=55% Similarity=0.459 Sum_probs=5.1
Q ss_pred CCCcEEEccCC
Q 038037 118 SNLVSLDLSLN 128 (798)
Q Consensus 118 ~~L~~L~l~~~ 128 (798)
++|++|++++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34444444444
No 94
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=24.86 E-value=43 Score=44.24 Aligned_cols=33 Identities=24% Similarity=0.207 Sum_probs=29.1
Q ss_pred EcCCCcccccCCccccCCCCCcEEeCCCCcCCc
Q 038037 592 DLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISD 624 (798)
Q Consensus 592 ~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~ 624 (798)
||++|+|+.+.+..|..+++|+.|+|++|.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 688999998888889999999999999998764
Done!