Query 038037
Match_columns 798
No_of_seqs 648 out of 4500
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 11:28:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038037.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038037hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 8.5E-73 2.9E-77 661.6 46.5 665 2-798 19-718 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.5E-63 5.2E-68 583.4 39.6 630 43-795 77-738 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 7E-58 2.4E-62 531.6 51.8 577 69-797 25-622 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 6.2E-56 2.1E-60 515.3 45.2 588 42-684 24-634 (680)
5 3t6q_A CD180 antigen; protein- 100.0 1.8E-52 6.1E-57 479.6 42.4 486 161-798 68-561 (606)
6 3t6q_A CD180 antigen; protein- 100.0 7.9E-52 2.7E-56 474.3 40.3 530 69-685 33-572 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 2.3E-50 8E-55 462.1 43.2 517 150-798 32-559 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 4.5E-50 1.6E-54 459.7 36.0 540 72-684 14-569 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 2.4E-49 8.1E-54 468.2 36.0 526 43-684 24-571 (844)
10 3j0a_A TOLL-like receptor 5; m 100.0 1.3E-46 4.3E-51 444.9 37.4 504 73-678 8-544 (844)
11 2z63_A TOLL-like receptor 4, v 100.0 9.6E-46 3.3E-50 421.0 40.2 494 150-798 28-532 (570)
12 2z81_A CD282 antigen, TOLL-lik 100.0 1.1E-45 3.7E-50 418.2 36.0 490 154-798 9-511 (549)
13 2z63_A TOLL-like receptor 4, v 100.0 4.1E-45 1.4E-49 415.8 36.9 521 96-682 9-540 (570)
14 4eco_A Uncharacterized protein 100.0 1.5E-46 5.1E-51 429.2 25.1 361 17-413 56-474 (636)
15 4ecn_A Leucine-rich repeat pro 100.0 8.7E-45 3E-49 419.9 31.0 499 20-646 285-863 (876)
16 2z81_A CD282 antigen, TOLL-lik 100.0 1.6E-44 5.4E-49 408.7 29.0 484 94-684 26-522 (549)
17 4g8a_A TOLL-like receptor 4; l 100.0 1.5E-42 5.1E-47 400.6 39.9 514 151-797 53-580 (635)
18 4g8a_A TOLL-like receptor 4; l 100.0 4.5E-42 1.5E-46 396.6 39.4 522 95-684 53-591 (635)
19 2z7x_B TOLL-like receptor 1, v 100.0 8.5E-43 2.9E-47 391.4 30.4 224 514-798 248-482 (520)
20 2z7x_B TOLL-like receptor 1, v 100.0 5.7E-43 1.9E-47 392.8 26.8 448 150-684 21-493 (520)
21 4ecn_A Leucine-rich repeat pro 100.0 6.9E-42 2.3E-46 395.7 25.9 176 537-773 673-864 (876)
22 4eco_A Uncharacterized protein 100.0 8E-42 2.7E-46 390.2 26.1 364 289-797 192-600 (636)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 6.1E-41 2.1E-45 379.2 28.1 467 152-682 33-519 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.5E-40 5.1E-45 376.0 28.8 459 175-798 32-511 (562)
25 3v47_A TOLL-like receptor 5B a 100.0 7.6E-37 2.6E-41 337.1 32.0 401 201-684 13-420 (455)
26 3v47_A TOLL-like receptor 5B a 100.0 1.8E-35 6.2E-40 326.1 33.6 375 174-650 30-411 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 1E-36 3.5E-41 332.2 22.2 408 150-677 11-433 (454)
28 1jl5_A Outer protein YOPM; leu 100.0 9.8E-36 3.4E-40 324.5 26.5 353 239-674 5-371 (454)
29 1o6v_A Internalin A; bacterial 100.0 1.4E-33 4.8E-38 310.9 29.8 345 368-798 44-389 (466)
30 1o6v_A Internalin A; bacterial 100.0 4E-33 1.4E-37 307.3 32.8 108 533-649 283-390 (466)
31 3bz5_A Internalin-J, INLJ; leu 100.0 5.3E-34 1.8E-38 311.1 25.0 367 165-685 33-399 (457)
32 3bz5_A Internalin-J, INLJ; leu 100.0 1.5E-32 5.3E-37 299.5 29.9 317 64-484 37-353 (457)
33 2id5_A Lingo-1, leucine rich r 100.0 7.7E-33 2.6E-37 306.7 23.4 301 421-797 32-333 (477)
34 2id5_A Lingo-1, leucine rich r 100.0 4.9E-32 1.7E-36 300.2 29.6 112 536-648 223-334 (477)
35 1ogq_A PGIP-2, polygalacturona 100.0 3E-33 1E-37 290.4 16.2 281 3-339 14-302 (313)
36 4fmz_A Internalin; leucine ric 100.0 4.1E-31 1.4E-35 280.0 30.7 308 365-797 39-346 (347)
37 3o6n_A APL1; leucine-rich repe 100.0 3.9E-31 1.3E-35 284.6 27.8 155 67-258 43-198 (390)
38 3o6n_A APL1; leucine-rich repe 100.0 1.2E-30 4.1E-35 280.8 27.9 310 173-624 44-353 (390)
39 4fmz_A Internalin; leucine ric 100.0 4.6E-30 1.6E-34 271.9 29.4 308 64-434 39-346 (347)
40 3oja_B Anopheles plasmodium-re 100.0 7.9E-30 2.7E-34 289.6 28.7 177 67-284 49-225 (597)
41 3oja_B Anopheles plasmodium-re 100.0 1.4E-29 4.7E-34 287.6 27.9 310 173-624 50-359 (597)
42 1ogq_A PGIP-2, polygalacturona 100.0 1.5E-30 5.1E-35 270.1 16.2 214 524-795 88-302 (313)
43 1xku_A Decorin; proteoglycan, 100.0 4.6E-29 1.6E-33 261.8 27.7 288 397-795 32-330 (330)
44 2ft3_A Biglycan; proteoglycan, 100.0 5.2E-29 1.8E-33 261.6 23.3 241 397-673 34-277 (332)
45 1z7x_W Ribonuclease inhibitor; 100.0 9.9E-32 3.4E-36 296.8 -1.9 389 328-796 3-439 (461)
46 1xku_A Decorin; proteoglycan, 100.0 2.3E-27 7.9E-32 248.9 28.8 276 69-406 52-329 (330)
47 2ft3_A Biglycan; proteoglycan, 100.0 9.9E-28 3.4E-32 251.8 25.8 288 305-670 34-330 (332)
48 1z7x_W Ribonuclease inhibitor; 100.0 1E-30 3.5E-35 288.7 0.9 392 43-482 3-439 (461)
49 2z66_A Variable lymphocyte rec 100.0 1.5E-27 5.1E-32 247.5 22.0 248 495-798 10-262 (306)
50 3zyi_A Leucine-rich repeat-con 100.0 2.6E-27 9E-32 259.7 24.0 246 495-797 57-303 (452)
51 3zyj_A Leucine-rich repeat-con 100.0 2.6E-27 8.9E-32 258.8 23.5 246 495-797 46-292 (440)
52 2z80_A TOLL-like receptor 2, v 100.0 1.3E-27 4.6E-32 253.1 18.6 258 513-798 52-315 (353)
53 4fcg_A Uncharacterized protein 99.9 4.7E-28 1.6E-32 252.7 13.7 260 16-283 45-314 (328)
54 1ozn_A Reticulon 4 receptor; N 99.9 3.9E-26 1.3E-30 234.1 21.5 175 496-673 15-190 (285)
55 3ogk_B Coronatine-insensitive 99.9 2.9E-28 9.8E-33 278.2 5.3 393 143-625 105-528 (592)
56 2z66_A Variable lymphocyte rec 99.9 3E-26 1E-30 237.7 18.6 281 399-783 10-297 (306)
57 3ogk_B Coronatine-insensitive 99.9 3.8E-28 1.3E-32 277.2 4.5 210 64-281 68-304 (592)
58 1ozn_A Reticulon 4 receptor; N 99.9 1E-25 3.5E-30 230.9 20.8 143 532-677 100-242 (285)
59 1wwl_A Monocyte differentiatio 99.9 1.3E-27 4.4E-32 248.1 5.4 226 515-798 65-310 (312)
60 2z80_A TOLL-like receptor 2, v 99.9 4.8E-26 1.6E-30 241.2 16.4 288 27-345 26-318 (353)
61 4fcg_A Uncharacterized protein 99.9 1.1E-25 3.6E-30 234.9 18.1 225 513-797 81-314 (328)
62 3g06_A SSPH2 (leucine-rich rep 99.9 3.9E-24 1.3E-28 239.7 28.1 269 421-784 40-308 (622)
63 3g06_A SSPH2 (leucine-rich rep 99.9 1.4E-24 4.9E-29 243.3 23.5 270 396-761 40-309 (622)
64 3zyj_A Leucine-rich repeat-con 99.9 2.1E-24 7.1E-29 235.8 24.3 237 422-684 65-303 (440)
65 3zyi_A Leucine-rich repeat-con 99.9 2.2E-24 7.7E-29 236.4 24.2 238 421-684 75-314 (452)
66 2p1m_B Transport inhibitor res 99.9 2.1E-27 7.2E-32 271.2 -2.5 419 146-644 101-541 (594)
67 2z62_A TOLL-like receptor 4, v 99.9 1.8E-24 6E-29 220.6 17.1 208 538-798 29-238 (276)
68 2p1m_B Transport inhibitor res 99.9 4.6E-27 1.6E-31 268.4 -2.8 189 29-231 33-244 (594)
69 2o6q_A Variable lymphocyte rec 99.9 9.2E-24 3.1E-28 214.2 21.8 202 538-797 17-218 (270)
70 1wwl_A Monocyte differentiatio 99.9 4.9E-26 1.7E-30 236.2 4.7 249 65-342 39-310 (312)
71 3o53_A Protein LRIM1, AGAP0063 99.9 3E-25 1E-29 230.9 9.2 260 43-337 10-271 (317)
72 3o53_A Protein LRIM1, AGAP0063 99.9 1.1E-24 3.8E-29 226.6 11.7 237 420-694 33-271 (317)
73 3oja_A Leucine-rich immune mol 99.9 2.5E-24 8.7E-29 236.9 13.6 217 513-797 34-250 (487)
74 2o6q_A Variable lymphocyte rec 99.9 1.1E-22 3.9E-27 206.1 21.8 206 422-677 17-222 (270)
75 1p9a_G Platelet glycoprotein I 99.9 1E-22 3.6E-27 208.0 20.6 204 532-797 5-208 (290)
76 3oja_A Leucine-rich immune mol 99.9 1.9E-23 6.4E-28 229.9 15.7 235 420-692 33-269 (487)
77 2z62_A TOLL-like receptor 4, v 99.9 1.9E-22 6.4E-27 205.6 18.4 158 517-678 80-242 (276)
78 1p9a_G Platelet glycoprotein I 99.9 3.1E-22 1.1E-26 204.5 19.1 209 422-684 11-219 (290)
79 2xwt_C Thyrotropin receptor; s 99.9 1.9E-22 6.3E-27 200.7 16.2 198 537-795 31-237 (239)
80 3rfs_A Internalin B, repeat mo 99.9 1.1E-22 3.7E-27 206.5 12.3 141 533-676 81-221 (272)
81 3m19_A Variable lymphocyte rec 99.9 1.9E-21 6.4E-26 194.8 19.7 130 538-673 15-144 (251)
82 3rfs_A Internalin B, repeat mo 99.9 2.5E-22 8.6E-27 203.7 12.7 197 69-280 19-215 (272)
83 3m19_A Variable lymphocyte rec 99.9 2.3E-21 7.8E-26 194.2 18.9 184 496-682 18-202 (251)
84 2xwt_C Thyrotropin receptor; s 99.9 7.3E-22 2.5E-26 196.4 14.1 206 504-771 23-237 (239)
85 3goz_A Leucine-rich repeat-con 99.9 2.3E-23 7.9E-28 221.0 2.6 112 537-648 80-210 (362)
86 1h6u_A Internalin H; cell adhe 99.9 2.2E-21 7.4E-26 200.4 15.5 146 513-673 41-186 (308)
87 4glp_A Monocyte differentiatio 99.9 4.2E-22 1.4E-26 206.5 9.9 207 536-797 90-307 (310)
88 4ay9_X Follicle-stimulating ho 99.9 3.2E-21 1.1E-25 203.3 15.7 242 494-794 11-256 (350)
89 2ca6_A RAN GTPase-activating p 99.9 2.9E-23 1E-27 222.7 -1.0 261 427-776 15-319 (386)
90 2ast_B S-phase kinase-associat 99.9 1.5E-22 5.1E-27 213.1 4.3 237 27-280 33-282 (336)
91 4glp_A Monocyte differentiatio 99.8 4.3E-21 1.5E-25 198.9 13.2 188 67-259 62-264 (310)
92 3goz_A Leucine-rich repeat-con 99.8 7.9E-22 2.7E-26 209.2 6.5 270 74-385 3-299 (362)
93 1h6u_A Internalin H; cell adhe 99.8 5.7E-20 1.9E-24 189.7 19.3 194 64-282 36-229 (308)
94 2ast_B S-phase kinase-associat 99.8 4.9E-21 1.7E-25 201.5 7.9 255 70-349 48-314 (336)
95 4ay9_X Follicle-stimulating ho 99.8 4.3E-20 1.5E-24 194.7 14.6 219 515-792 11-234 (350)
96 2ca6_A RAN GTPase-activating p 99.8 8.9E-22 3.1E-26 211.1 1.1 251 64-344 27-319 (386)
97 2o6s_A Variable lymphocyte rec 99.8 1.5E-19 5.3E-24 175.3 12.6 175 495-679 10-184 (208)
98 2o6s_A Variable lymphocyte rec 99.8 2.2E-19 7.4E-24 174.2 13.3 109 563-673 29-137 (208)
99 2v9t_B SLIT homolog 2 protein 99.8 5.8E-19 2E-23 172.3 14.3 144 537-683 32-175 (220)
100 2v70_A SLIT-2, SLIT homolog 2 99.8 9.9E-19 3.4E-23 170.6 14.5 162 517-684 15-177 (220)
101 2xot_A Amphoterin-induced prot 99.8 2.9E-19 1E-23 189.0 10.6 182 495-679 21-208 (361)
102 2v9t_B SLIT homolog 2 protein 99.8 2.1E-18 7.1E-23 168.3 15.4 153 495-648 14-166 (220)
103 2v70_A SLIT-2, SLIT homolog 2 99.8 2E-18 6.9E-23 168.4 15.2 154 495-649 14-168 (220)
104 3cvr_A Invasion plasmid antige 99.8 2.4E-18 8.2E-23 190.3 17.6 196 514-785 60-255 (571)
105 2xot_A Amphoterin-induced prot 99.8 2.3E-18 7.9E-23 182.2 14.9 127 541-673 22-149 (361)
106 3e6j_A Variable lymphocyte rec 99.8 1.1E-17 3.8E-22 164.4 17.4 154 564-775 21-174 (229)
107 1h6t_A Internalin B; cell adhe 99.8 4.9E-18 1.7E-22 173.6 14.3 175 533-776 42-216 (291)
108 3cvr_A Invasion plasmid antige 99.8 5.6E-18 1.9E-22 187.3 15.5 189 493-761 60-255 (571)
109 3e6j_A Variable lymphocyte rec 99.7 1.8E-17 6.2E-22 162.8 15.3 137 537-677 40-176 (229)
110 1h6t_A Internalin B; cell adhe 99.7 1.9E-17 6.6E-22 169.1 15.9 174 64-260 41-214 (291)
111 1xeu_A Internalin C; cellular 99.7 1E-17 3.5E-22 168.3 12.7 123 537-673 19-141 (263)
112 1m9s_A Internalin B; cell inva 99.7 3.2E-17 1.1E-21 183.6 16.0 182 533-783 39-220 (605)
113 1m9s_A Internalin B; cell inva 99.7 7.9E-17 2.7E-21 180.4 19.0 175 64-261 38-212 (605)
114 1w8a_A SLIT protein; signaling 99.7 1.9E-16 6.5E-21 150.8 13.2 138 540-683 11-149 (192)
115 4ezg_A Putative uncharacterize 99.7 2.1E-16 7.2E-21 151.4 12.8 152 91-258 41-193 (197)
116 4ezg_A Putative uncharacterize 99.7 2.4E-16 8.3E-21 151.0 12.2 150 513-673 44-194 (197)
117 2wfh_A SLIT homolog 2 protein 99.7 6.8E-16 2.3E-20 146.8 13.3 138 540-684 13-150 (193)
118 1dce_A Protein (RAB geranylger 99.7 1E-17 3.5E-22 186.5 0.7 197 534-791 346-567 (567)
119 1xeu_A Internalin C; cellular 99.7 1.5E-16 5.3E-21 159.6 9.2 127 533-673 59-185 (263)
120 1dce_A Protein (RAB geranylger 99.7 1.1E-18 3.7E-23 194.4 -7.2 203 420-666 348-566 (567)
121 3sb4_A Hypothetical leucine ri 99.6 9.4E-16 3.2E-20 160.0 12.6 56 735-791 272-328 (329)
122 4b8c_D Glucose-repressible alc 99.6 1.2E-16 4.2E-21 183.7 4.0 121 552-679 215-335 (727)
123 4b8c_D Glucose-repressible alc 99.6 2.6E-16 9E-21 181.0 4.5 187 470-678 173-359 (727)
124 1w8a_A SLIT protein; signaling 99.6 5.1E-15 1.8E-19 140.8 12.6 111 538-649 30-141 (192)
125 2ell_A Acidic leucine-rich nuc 99.6 1.8E-15 6.2E-20 140.9 9.2 134 537-673 24-160 (168)
126 2ell_A Acidic leucine-rich nuc 99.6 1.7E-15 6E-20 141.0 9.1 138 510-650 21-163 (168)
127 2o6r_A Variable lymphocyte rec 99.6 6.8E-15 2.3E-19 138.2 13.0 133 539-677 9-141 (177)
128 3sb4_A Hypothetical leucine ri 99.6 3.6E-15 1.2E-19 155.5 12.0 283 369-667 24-328 (329)
129 2wfh_A SLIT homolog 2 protein 99.6 1.1E-14 3.6E-19 138.5 12.9 126 518-648 15-140 (193)
130 2je0_A Acidic leucine-rich nuc 99.5 3.6E-15 1.2E-19 135.7 6.7 129 537-668 17-148 (149)
131 4fs7_A Uncharacterized protein 99.5 4.1E-13 1.4E-17 143.7 23.3 123 532-665 271-393 (394)
132 4fdw_A Leucine rich hypothetic 99.5 1.3E-13 4.5E-18 146.5 18.9 205 528-795 171-381 (401)
133 2o6r_A Variable lymphocyte rec 99.5 3.4E-14 1.2E-18 133.5 12.0 112 537-649 28-139 (177)
134 2je0_A Acidic leucine-rich nuc 99.5 2.2E-14 7.7E-19 130.4 9.8 128 149-278 16-148 (149)
135 4fdw_A Leucine rich hypothetic 99.5 1.4E-12 4.7E-17 138.7 21.2 262 150-455 113-381 (401)
136 1a9n_A U2A', U2A'; complex (nu 99.5 4E-14 1.4E-18 132.7 7.8 138 532-673 14-153 (176)
137 1a9n_A U2A', U2A'; complex (nu 99.5 8.8E-14 3E-18 130.4 10.0 136 581-773 14-153 (176)
138 3g39_A Variable lymphocyte rec 99.5 3.4E-13 1.1E-17 125.2 11.9 109 564-677 11-119 (170)
139 2r9u_A Variable lymphocyte rec 99.4 1.3E-12 4.4E-17 121.7 11.9 108 565-677 15-122 (174)
140 1ds9_A Outer arm dynein; leuci 99.4 2E-15 6.9E-20 144.7 -7.4 104 563-673 19-128 (198)
141 4fs7_A Uncharacterized protein 99.4 1.4E-11 4.7E-16 131.8 21.7 133 528-670 244-376 (394)
142 3g39_A Variable lymphocyte rec 99.4 8.9E-13 3E-17 122.4 10.8 107 539-649 11-117 (170)
143 2r9u_A Variable lymphocyte rec 99.4 1.7E-12 5.8E-17 120.8 10.9 106 540-649 15-120 (174)
144 1ds9_A Outer arm dynein; leuci 99.3 1.1E-14 3.9E-19 139.4 -6.1 134 532-673 43-185 (198)
145 4gt6_A Cell surface protein; l 99.3 2.7E-10 9.2E-15 121.8 24.3 138 525-672 253-390 (394)
146 4gt6_A Cell surface protein; l 99.3 2.5E-10 8.6E-15 122.0 20.9 109 531-646 282-390 (394)
147 3un9_A NLR family member X1; l 99.2 1.4E-12 4.8E-17 137.3 0.0 167 93-266 71-259 (372)
148 2ifg_A High affinity nerve gro 99.2 4.9E-11 1.7E-15 125.4 11.4 100 582-684 27-127 (347)
149 3un9_A NLR family member X1; l 99.2 1.2E-12 4E-17 137.8 -3.4 187 68-258 71-282 (372)
150 2ifg_A High affinity nerve gro 99.1 1.6E-10 5.4E-15 121.4 10.1 102 518-623 13-116 (347)
151 4h09_A Hypothetical leucine ri 99.0 3.9E-08 1.3E-12 104.5 23.1 117 531-652 234-350 (379)
152 4h09_A Hypothetical leucine ri 98.9 1.1E-07 3.8E-12 100.9 23.2 102 530-635 256-357 (379)
153 2ra8_A Uncharacterized protein 98.8 3.5E-09 1.2E-13 110.2 5.2 62 197-258 251-319 (362)
154 2ra8_A Uncharacterized protein 98.7 2.8E-08 9.5E-13 103.4 8.3 203 42-257 106-341 (362)
155 1io0_A Tropomodulin; LRR prote 98.3 1.8E-07 6E-12 87.6 3.4 61 198-258 93-163 (185)
156 1io0_A Tropomodulin; LRR prote 98.3 1.4E-07 4.9E-12 88.3 2.8 69 91-163 33-106 (185)
157 3rw6_A Nuclear RNA export fact 98.1 3E-07 1E-11 90.3 -0.1 99 567-666 148-257 (267)
158 3rw6_A Nuclear RNA export fact 98.1 5.1E-07 1.8E-11 88.6 1.2 94 582-677 137-237 (267)
159 3e4g_A ATP synthase subunit S, 98.0 3.4E-06 1.2E-10 76.4 3.4 84 174-257 61-150 (176)
160 3e4g_A ATP synthase subunit S, 97.9 3.4E-06 1.2E-10 76.5 2.8 34 95-128 62-95 (176)
161 3rfe_A Platelet glycoprotein I 97.3 0.00022 7.6E-09 61.6 5.3 55 740-796 12-67 (130)
162 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00028 9.7E-09 65.1 3.6 15 197-211 97-111 (197)
163 1pgv_A TMD-1, tropomodulin TMD 96.9 0.00047 1.6E-08 63.7 3.8 67 93-163 40-111 (197)
164 3rfe_A Platelet glycoprotein I 96.7 0.0018 6.2E-08 55.8 5.6 44 730-773 25-68 (130)
165 2lz0_A Uncharacterized protein 71.5 6.8 0.00023 31.3 5.5 45 598-643 8-52 (100)
166 2lz0_A Uncharacterized protein 59.6 9.7 0.00033 30.3 4.2 48 572-620 6-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=8.5e-73 Score=661.59 Aligned_cols=665 Identities=31% Similarity=0.393 Sum_probs=514.5
Q ss_pred ccccccccCcCCCCCCCCCCCCCCCCCCCceeeeeEecCCCCeEEEEEcCCCCccCc---ccCcccccccCCCCeEEcCC
Q 038037 2 HINRDLDAWKFDCRPKAASWKPEEGDVDCCSWDGVHCDKNTGHVIKLDLSNSCLFGS---INSSSSLFKLVHLEWLNLAF 78 (798)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~w~~~~~~~~~~~l~~L~l~~~~~~~~---~~~~~~l~~~~~L~~L~L~~ 78 (798)
.||+++. ++. ..++|.. +.+||.|.||.|+ .++|+.|+|+++.+.+. ++. .+..+++|+.++++.
T Consensus 19 ~~k~~~~-~~~----~l~~W~~---~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~--~l~~L~~L~~l~~~~ 86 (768)
T 3rgz_A 19 SFKDVLP-DKN----LLPDWSS---NKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSS--SLLSLTGLESLFLSN 86 (768)
T ss_dssp HHHTTCS-CTT----SSTTCCT---TSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHH--HTTTCTTCCEEECTT
T ss_pred HHHhhCC-Ccc----cccCCCC---CCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccCh--hHhccCcccccCCcC
Confidence 3677776 333 6789985 6799999999998 58999999999998876 554 788899999999998
Q ss_pred CCCCCCCCchhccCCCCCcEEEccCCCCCCCCch--hhhcCCCCcEEEccCCCCCCCccccCCCchHH-HHhcCCCCCEE
Q 038037 79 NDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPS--EILEFSNLVSLDLSLNDGPGGRLELQKPNLAN-LVEKLSNLETL 155 (798)
Q Consensus 79 ~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~-~~~~l~~L~~L 155 (798)
+.+.. +|..++.+++|++|+|++|.+.+.+|. .++++++|++|++++|.+.. ..+. .+.++++|++|
T Consensus 87 ~~~~~--l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~--------~~~~~~~~~l~~L~~L 156 (768)
T 3rgz_A 87 SHING--SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDF--------PGKVSGGLKLNSLEVL 156 (768)
T ss_dssp SCEEE--CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEEC--------CSSCCSCCCCTTCSEE
T ss_pred CCcCC--CchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCC--------cCCHHHhccCCCCCEE
Confidence 87644 567899999999999999999988888 89999999999999997321 2222 23688999999
Q ss_pred EccCCccCCCCchh---ccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCEEecCCC
Q 038037 156 DLGDASIRSTIPHN---LANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSAN 232 (798)
Q Consensus 156 ~l~~~~~~~~~~~~---~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 232 (798)
++++|.+.+..+.. +.++++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+. +..+++|++|++++|
T Consensus 157 ~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n 233 (768)
T 3rgz_A 157 DLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGN 233 (768)
T ss_dssp ECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSS
T ss_pred ECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCC
Confidence 99999998887776 7889999999999999886544 48899999999999999987776 899999999999999
Q ss_pred cCCCcccccccCCCCCCEEECcCCcCCCCCccccccCCCCceeecCCCCcceEecCCccccccCCccccCC-CCCCEEEc
Q 038037 233 ILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNF-SSLKILDL 311 (798)
Q Consensus 233 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l-~~L~~L~L 311 (798)
.+++..|..+..+++|++|++++|.+.+..|.. .+++|++|++++|++ ++.+|..+... ++|++|++
T Consensus 234 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l----------~~~ip~~~~~~~~~L~~L~L 301 (768)
T 3rgz_A 234 KLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKF----------TGEIPDFLSGACDTLTGLDL 301 (768)
T ss_dssp CCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEE----------EESCCCCSCTTCTTCSEEEC
T ss_pred cCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCcc----------CCccCHHHHhhcCcCCEEEC
Confidence 999889999999999999999999997776654 788887766666654 44567776664 99999999
Q ss_pred CCCCccccCCCCcCCCCCCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCcccCccchHHH
Q 038037 312 RSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFL 391 (798)
Q Consensus 312 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 391 (798)
++|.+.+..|..++.+++|++|++++|.+.+..+.. .+..+++|++|++++|.+.+..+..
T Consensus 302 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~-----------------~l~~l~~L~~L~Ls~n~l~~~~p~~-- 362 (768)
T 3rgz_A 302 SGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD-----------------TLLKMRGLKVLDLSFNEFSGELPES-- 362 (768)
T ss_dssp CSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHH-----------------HHTTCTTCCEEECCSSEEEECCCTT--
T ss_pred cCCcCCCccchHHhcCCCccEEECCCCcccCcCCHH-----------------HHhcCCCCCEEeCcCCccCccccHH--
Confidence 999998899999999999999999999988655442 3788899999999999987544432
Q ss_pred hhcCC-CCCeEEcccccccccc-cCCCCCCccCccEEeeCCCCCC-CcchhhhCCCCccEEECCCCcccCCCCccccccc
Q 038037 392 LTSLK-NLEALVLSSNRLSLLT-KATSNTTSQKFRYVGLRSCNLT-EFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPS 468 (798)
Q Consensus 392 ~~~l~-~L~~L~l~~n~i~~~~-~~~~~~~~~~L~~L~l~~~~l~-~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~ 468 (798)
+..++ +|+.|++++|+++... ........++|++|++++|.++ .+|..+..+++|+.|++++|.+++..|..+. .
T Consensus 363 l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~--~ 440 (768)
T 3rgz_A 363 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG--S 440 (768)
T ss_dssp HHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG--G
T ss_pred HHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHh--c
Confidence 45565 8999999999876432 2222223567888888888886 6778888888999999999988888887776 6
Q ss_pred CcccceeeCCCCccccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcc
Q 038037 469 MQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNS 548 (798)
Q Consensus 469 l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 548 (798)
+++|+.|++++|.+....+... ...+.++.+++++|++++.+|..+..+++|++|++++|+
T Consensus 441 l~~L~~L~L~~n~l~~~~p~~~-------------------~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~ 501 (768)
T 3rgz_A 441 LSKLRDLKLWLNMLEGEIPQEL-------------------MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 501 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGG-------------------GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred CCCCCEEECCCCcccCcCCHHH-------------------cCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCc
Confidence 7788888888877664221100 113455666666666666777778888888888888888
Q ss_pred cccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCC--------
Q 038037 549 LSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNN-------- 620 (798)
Q Consensus 549 i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N-------- 620 (798)
+++.+|..+..++ +|++|++++|++++..|..+..+++|++|++++|.+++.+|..+.....+..+++..+
T Consensus 502 l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (768)
T 3rgz_A 502 LTGEIPKWIGRLE-NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN 580 (768)
T ss_dssp CCSCCCGGGGGCT-TCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEEC
T ss_pred cCCcCChHHhcCC-CCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccc
Confidence 8877887777776 6888888888888777888888888888888888888777777766555554444331
Q ss_pred --------------cCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCChhhhhcchh
Q 038037 621 --------------QISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDA 686 (798)
Q Consensus 621 --------------~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~ 686 (798)
.+.+..+..+..++.++.+++..|.+.+..+..+ ..+++|+.||+++|+++|.+|... ..
T Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~--~~l~~L~~LdLs~N~l~g~ip~~l-~~--- 654 (768)
T 3rgz_A 581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF--DNNGSMMFLDMSYNMLSGYIPKEI-GS--- 654 (768)
T ss_dssp CSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSC--SSSBCCCEEECCSSCCBSCCCGGG-GG---
T ss_pred ccccccccccccccccccccchhhhccccccccccccceecccCchhh--hccccccEEECcCCcccccCCHHH-hc---
Confidence 1222333334444555556666677777665543 667788888888888887777542 10
Q ss_pred chhccccccccccCCCCCCCCccccchhccccceeeeccCcccccCCccCceeEEEcCCCcccccCchhhhcccCCCeEe
Q 038037 687 MKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLN 766 (798)
Q Consensus 687 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 766 (798)
.+.|+.|+|++|++++.+|..|+.+++|++||
T Consensus 655 ------------------------------------------------l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~Ld 686 (768)
T 3rgz_A 655 ------------------------------------------------MPYLFILNLGHNDISGSIPDEVGDLRGLNILD 686 (768)
T ss_dssp ------------------------------------------------CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred ------------------------------------------------cccCCEEeCcCCccCCCCChHHhCCCCCCEEE
Confidence 35577788888888888888888888888888
Q ss_pred CcCCccccCCCccccCCCCCCeEeCCCCcCCC
Q 038037 767 LDNNNLQGHIPSCLGNLTNLESLDLSNNRFFF 798 (798)
Q Consensus 767 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 798 (798)
|++|++++.+|..|+.+++|++|||++|+++|
T Consensus 687 Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g 718 (768)
T 3rgz_A 687 LSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 718 (768)
T ss_dssp CCSSCCEECCCGGGGGCCCCSEEECCSSEEEE
T ss_pred CCCCcccCcCChHHhCCCCCCEEECcCCcccc
Confidence 88888888888888888888888888887765
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.5e-63 Score=583.37 Aligned_cols=630 Identities=29% Similarity=0.363 Sum_probs=512.0
Q ss_pred CeEEEEEcCCCCccCcccCcccccccCCCCeEEcCCCCCCCCCCch--hccCCCCCcEEEccCCCCCCCCchhh-hcCCC
Q 038037 43 GHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPP--EIINLLRLSYLNLSGASLSGQIPSEI-LEFSN 119 (798)
Q Consensus 43 ~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~l~~--~~~~l~~L~~L~Ls~~~~~~~~~~~~-~~l~~ 119 (798)
.+++.++++.+.+. +....+..+++|++|+|++|.+... +|. .++++++|++|+|++|.+.+..|..+ .++++
T Consensus 77 ~~L~~l~~~~~~~~---~l~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 152 (768)
T 3rgz_A 77 TGLESLFLSNSHIN---GSVSGFKCSASLTSLDLSRNSLSGP-VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNS 152 (768)
T ss_dssp TTCCEEECTTSCEE---ECCCCCCCCTTCCEEECCSSEEEEE-GGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTT
T ss_pred CcccccCCcCCCcC---CCchhhccCCCCCEEECCCCcCCCc-CCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCC
Confidence 35666777766543 2223789999999999999998764 666 89999999999999999987888766 78999
Q ss_pred CcEEEccCCCCCCCccccCCCchHHH---HhcCCCCCEEEccCCccCCCCchhccCCCCCCEEeccccccCccCcccccC
Q 038037 120 LVSLDLSLNDGPGGRLELQKPNLANL---VEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGN 196 (798)
Q Consensus 120 L~~L~l~~~~~~~~~~~~~~~~l~~~---~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~ 196 (798)
|++|++++|.+. ...+.. +.++++|++|++++|.+.+..+. ..+++|++|++++|.+.+..+. ++.
T Consensus 153 L~~L~Ls~n~l~--------~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~ 221 (768)
T 3rgz_A 153 LEVLDLSANSIS--------GANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGD 221 (768)
T ss_dssp CSEEECCSSCCE--------EETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTT
T ss_pred CCEEECCCCccC--------CcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-ccc
Confidence 999999999832 223333 78999999999999999876653 7899999999999999987666 999
Q ss_pred CCCCcEEEccCCCCCCccchhccCCCCCCEEecCCCcCCCcccccccCCCCCCEEECcCCcCCCCCccccccC-CCCcee
Q 038037 197 LSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNL-GSLKVL 275 (798)
Q Consensus 197 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l-~~L~~L 275 (798)
+++|++|++++|.+.+..+..+..+++|++|++++|.+++..|.. .+++|++|++++|.+.+..|..+... ++|++|
T Consensus 222 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L 299 (768)
T 3rgz_A 222 CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGL 299 (768)
T ss_dssp CCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEE
T ss_pred CCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEE
Confidence 999999999999999999999999999999999999998777664 88999999999999987888877665 999777
Q ss_pred ecCCCCcceEecCCccccccCCccccCCCCCCEEEcCCCCccccCCCC-cCCCCCCcEEeccCccCcCCcchhcccccCC
Q 038037 276 DLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHS-IGNFTRLQLLYLTFNNFSGDLLGSIGNLRSL 354 (798)
Q Consensus 276 ~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 354 (798)
++++|.+ .+.+|..+..+++|++|++++|.+.+.+|.. +..+++|++|++++|.+++..+.
T Consensus 300 ~Ls~n~l----------~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~-------- 361 (768)
T 3rgz_A 300 DLSGNHF----------YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE-------- 361 (768)
T ss_dssp ECCSSEE----------EECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCT--------
T ss_pred ECcCCcC----------CCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccH--------
Confidence 7766654 4466888999999999999999998777765 89999999999999999876666
Q ss_pred cccccCCCChhhhcCC-CCcEEeccCCcccCccchHHHhhcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCC
Q 038037 355 KALHVGQIPSSLRNLT-QLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNL 433 (798)
Q Consensus 355 ~~l~l~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l 433 (798)
.+..++ +|+.|++++|.+.+..+..+....+++|+.|++++|.++..... ....+++|++|++++|.+
T Consensus 362 ----------~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~N~l 430 (768)
T 3rgz_A 362 ----------SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP-TLSNCSELVSLHLSFNYL 430 (768)
T ss_dssp ----------THHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCG-GGGGCTTCCEEECCSSEE
T ss_pred ----------HHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCH-HHhcCCCCCEEECcCCcc
Confidence 555665 78888888887765444332222367788888888876633211 223457788888888877
Q ss_pred C-CcchhhhCCCCccEEECCCCcccCCCCcccccccCcccceeeCCCCccccccCCCCCCCCcEEeccCCccCCCCCCCC
Q 038037 434 T-EFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPP 512 (798)
Q Consensus 434 ~-~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~ 512 (798)
+ .+|..+..+++|+.|++++|.+.+.+|..+. .+++|++|++++|++....+... ...
T Consensus 431 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~L~~N~l~~~~p~~l-------------------~~l 489 (768)
T 3rgz_A 431 SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM--YVKTLETLILDFNDLTGEIPSGL-------------------SNC 489 (768)
T ss_dssp ESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG--GCTTCCEEECCSSCCCSCCCGGG-------------------GGC
T ss_pred cCcccHHHhcCCCCCEEECCCCcccCcCCHHHc--CCCCceEEEecCCcccCcCCHHH-------------------hcC
Confidence 5 6677888888888888888888888888776 67888888888887764322110 123
Q ss_pred ccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEE
Q 038037 513 PETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVID 592 (798)
Q Consensus 513 ~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 592 (798)
++++.+++++|++++.+|.++..+++|++|++++|++++.+|..+..++ +|++|++++|++++.+|..+.....+..++
T Consensus 490 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~ 568 (768)
T 3rgz_A 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR-SLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 568 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCT-TCCEEECCSSEEESBCCGGGGTTTTCBCCS
T ss_pred CCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCC-CCCEEECCCCccCCcCChHHhcccchhhhh
Confidence 4566667777777778899999999999999999999999999999998 799999999999999998887776665555
Q ss_pred cCCC----------------------cccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCccccccc
Q 038037 593 LSHN----------------------LFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGII 650 (798)
Q Consensus 593 Ls~N----------------------~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 650 (798)
+..+ .+.+..+..+..++.++.++++.|.+.+..|..|..+++|+.|+|++|++++..
T Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~i 648 (768)
T 3rgz_A 569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 648 (768)
T ss_dssp TTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCC
T ss_pred ccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccC
Confidence 4431 133445556667778888999999999999999999999999999999999987
Q ss_pred CCCCCcCCCCcccEEEccCCcCcCCCChhhhhcchhchhccccccccccCCCCCCCCccccchhccccceeeeccCcccc
Q 038037 651 KEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMT 730 (798)
Q Consensus 651 ~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (798)
|..+ ..+++|+.|++++|+++|.+|...-
T Consensus 649 p~~l--~~l~~L~~L~Ls~N~l~g~ip~~l~------------------------------------------------- 677 (768)
T 3rgz_A 649 PKEI--GSMPYLFILNLGHNDISGSIPDEVG------------------------------------------------- 677 (768)
T ss_dssp CGGG--GGCTTCCEEECCSSCCCSCCCGGGG-------------------------------------------------
T ss_pred CHHH--hccccCCEEeCcCCccCCCCChHHh-------------------------------------------------
Confidence 7654 7899999999999999999997521
Q ss_pred cCCccCceeEEEcCCCcccccCchhhhcccCCCeEeCcCCccccCCCccccCCCCCCeEeCCCCc
Q 038037 731 YNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNR 795 (798)
Q Consensus 731 ~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 795 (798)
-.+.|+.|||++|++++.+|..+..+++|++|||++|+++|.+|.. +.+.++....+.+|+
T Consensus 678 ---~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~ 738 (768)
T 3rgz_A 678 ---DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNP 738 (768)
T ss_dssp ---GCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCT
T ss_pred ---CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCc
Confidence 0467899999999999999999999999999999999999999975 456667777777875
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=7e-58 Score=531.64 Aligned_cols=577 Identities=22% Similarity=0.230 Sum_probs=355.0
Q ss_pred CCCCeEEcCCCCCCCCCCchhccCCCCCcEEEccCCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCCchHH-HHh
Q 038037 69 VHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLAN-LVE 147 (798)
Q Consensus 69 ~~L~~L~L~~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~-~~~ 147 (798)
+++++|++++|.+... .+..|+++++|++|++++|.+++..|.++.++++|++|++++|.+. .++. .+.
T Consensus 25 ~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---------~l~~~~~~ 94 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS---------QLSDKTFA 94 (680)
T ss_dssp TTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC---------CCCTTTTT
T ss_pred CCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC---------ccChhhhc
Confidence 5666666666666553 3345666666666666666666555666666666666666666521 1121 345
Q ss_pred cCCCCCEEEccCCccCCCCchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhcc--CCCCCC
Q 038037 148 KLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIG--NLHSLK 225 (798)
Q Consensus 148 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~ 225 (798)
.+++|++|++++|.+.+..+..|+++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+. .+++|+
T Consensus 95 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~ 174 (680)
T 1ziw_A 95 FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLK 174 (680)
T ss_dssp TCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEES
T ss_pred cCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcccccccc
Confidence 555556666555555555445555555555555555555555555555555555555555555544444332 234555
Q ss_pred EEecCCCcCCCcccccccCCCCCCEEECcCCcCCCCCcccc---ccCCCCceeecCCCCcceEecCCccccccCCccccC
Q 038037 226 ELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSI---GNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRN 302 (798)
Q Consensus 226 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~---~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~ 302 (798)
+|++++|.+++..|..+..+++|+.|+++++.+.......+ ...++|++|++++|.+.. ..+..+..
T Consensus 175 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~----------~~~~~~~~ 244 (680)
T 1ziw_A 175 KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST----------TSNTTFLG 244 (680)
T ss_dssp EEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCE----------ECTTTTGG
T ss_pred EEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccc----------cChhHhhc
Confidence 55555555555555555555555555555554421111000 012334333333333222 22333333
Q ss_pred CCC--CCEEEcCCCCccccCCCCcCCCCCCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCC
Q 038037 303 FSS--LKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQN 380 (798)
Q Consensus 303 l~~--L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n 380 (798)
++. |++|++++|.+.+..+..|+.+++|++|++++|.+.+..+. .+
T Consensus 245 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------------------~~-------------- 292 (680)
T 1ziw_A 245 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH------------------SL-------------- 292 (680)
T ss_dssp GGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTT------------------TT--------------
T ss_pred cCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChh------------------hh--------------
Confidence 322 55555555555444444445555555555555544433322 33
Q ss_pred cccCccchHHHhhcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcc-hhhhCCCCccEEECCCCcccCC
Q 038037 381 SYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFP-NFLKNQHHLVILDLSANRIHGK 459 (798)
Q Consensus 381 ~l~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~-~~~~~~~~L~~L~ls~n~i~~~ 459 (798)
..+++|+.|++++|...... ....+..++ ..+..+++|++|++++|.+.+.
T Consensus 293 ------------~~l~~L~~L~L~~~~~~~~~----------------~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~ 344 (680)
T 1ziw_A 293 ------------HGLFNVRYLNLKRSFTKQSI----------------SLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI 344 (680)
T ss_dssp ------------TTCTTCCEEECTTCBCCC----------------------CCEECTTTTTTCTTCCEEECCSCCBCCC
T ss_pred ------------cCCCCccEEeccchhhhccc----------------ccccccccChhhcccCCCCCEEECCCCccCCC
Confidence 44444444444443211000 000000011 1344556666666666666655
Q ss_pred CCcccccccCcccceeeCCCCcccc--ccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCC
Q 038037 460 IPKWLLDPSMQYLNALNLSHNLLTR--FDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLN 537 (798)
Q Consensus 460 ~~~~~~~~~l~~L~~L~ls~n~l~~--~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~ 537 (798)
.+..+. .+++|++|++++|.+.. ++...+. ....+.++.+++++|++++..|..|..++
T Consensus 345 ~~~~~~--~l~~L~~L~Ls~n~~~~~~l~~~~f~-----------------~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 405 (680)
T 1ziw_A 345 KSNMFT--GLINLKYLSLSNSFTSLRTLTNETFV-----------------SLAHSPLHILNLTKNKISKIESDAFSWLG 405 (680)
T ss_dssp CTTTTT--TCTTCCEEECTTCBSCCCEECTTTTG-----------------GGTTSCCCEEECTTSCCCEECTTTTTTCT
T ss_pred ChhHhc--cccCCcEEECCCCchhhhhcchhhhc-----------------ccccCcCceEECCCCCCCeEChhhhhCCC
Confidence 554444 55666666666654321 1110000 00113456666666666667778888899
Q ss_pred CCCEEEeeCcccccccC-hhhhccccccceeecCCCccccccccccccCCCccEEEcCCCccc--ccCCccccCCCCCcE
Q 038037 538 TLKNLVLSHNSLSGLLP-QCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQ--GRIPRSLVNCSKLEF 614 (798)
Q Consensus 538 ~L~~L~Ls~n~i~~~~~-~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~--~~~~~~~~~l~~L~~ 614 (798)
+|++|++++|.+++.+| ..+.+++ +|++|++++|++.+..+..|..+++|+.|++++|.++ +..|..|..+++|++
T Consensus 406 ~L~~L~L~~N~l~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~ 484 (680)
T 1ziw_A 406 HLEVLDLGLNEIGQELTGQEWRGLE-NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI 484 (680)
T ss_dssp TCCEEECCSSCCEEECCSGGGTTCT-TCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCE
T ss_pred CCCEEeCCCCcCccccCcccccCcc-cccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCE
Confidence 99999999999886554 6777776 7999999999998888888999999999999999886 467888899999999
Q ss_pred EeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCC------CcCCCCcccEEEccCCcCcCCCChhhhhcchhch
Q 038037 615 LDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPR------TDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMK 688 (798)
Q Consensus 615 L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~------~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~ 688 (798)
|++++|+++++.+..|.++++|++|++++|+++++.+..+ .+.++++|+.|++++|+++ .+|...|..
T Consensus 485 L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~----- 558 (680)
T 1ziw_A 485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKD----- 558 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCTTTTTT-----
T ss_pred EECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCHHHccc-----
Confidence 9999999998888889999999999999999987643321 2467889999999999987 566543321
Q ss_pred hccccccccccCCCCCCCCccccchhccccceeeeccCcccccCCccCceeEEEcCCCcccccCchhhhcccCCCeEeCc
Q 038037 689 IVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLD 768 (798)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 768 (798)
.+.|+.|+|++|+++++.+..|.++++|+.|+|+
T Consensus 559 ----------------------------------------------l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~ 592 (680)
T 1ziw_A 559 ----------------------------------------------LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQ 592 (680)
T ss_dssp ----------------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECT
T ss_pred ----------------------------------------------ccCcceeECCCCCCCcCCHhHhCCCCCCCEEECC
Confidence 3568889999999998888888899999999999
Q ss_pred CCccccCCCcccc-CCCCCCeEeCCCCcCC
Q 038037 769 NNNLQGHIPSCLG-NLTNLESLDLSNNRFF 797 (798)
Q Consensus 769 ~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~ 797 (798)
+|+++++.|..|. .+++|+.|++++|++.
T Consensus 593 ~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~ 622 (680)
T 1ziw_A 593 KNLITSVEKKVFGPAFRNLTELDMRFNPFD 622 (680)
T ss_dssp TSCCCBCCHHHHHHHHTTCSEEECTTCCCC
T ss_pred CCcCCccChhHhcccccccCEEEccCCCcc
Confidence 9999988888787 7889999999999886
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=6.2e-56 Score=515.27 Aligned_cols=588 Identities=23% Similarity=0.223 Sum_probs=474.3
Q ss_pred CCeEEEEEcCCCCccCcccCcccccccCCCCeEEcCCCCCCCCCCchhccCCCCCcEEEccCCCCCCCCchhhhcCCCCc
Q 038037 42 TGHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLV 121 (798)
Q Consensus 42 ~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~ 121 (798)
+.++++|+++++.+.+.... .+.++++|++|++++|.+... .|..++.+++|++|+|++|.+++..+.+|..+++|+
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 100 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAA--NFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLT 100 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGG--GGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCS
T ss_pred CCCCcEEECCCCCCCCcCHH--HHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCccCccChhhhccCCCCC
Confidence 46899999999998776554 799999999999999998875 678899999999999999999855555799999999
Q ss_pred EEEccCCCCCCCccccCCCchHHHHhcCCCCCEEEccCCccCCCCchhccCCCCCCEEeccccccCccCccccc--CCCC
Q 038037 122 SLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFG--NLSK 199 (798)
Q Consensus 122 ~L~l~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~--~l~~ 199 (798)
+|++++|.+.. ..+..+.++++|++|++++|.+.+..+..++.+++|++|++++|.+++..+..+. .+++
T Consensus 101 ~L~L~~n~l~~--------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 172 (680)
T 1ziw_A 101 ELHLMSNSIQK--------IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSS 172 (680)
T ss_dssp EEECCSSCCCC--------CCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCE
T ss_pred EEECCCCccCc--------cChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcccccc
Confidence 99999998422 1224578999999999999999988888999999999999999999988777654 5689
Q ss_pred CcEEEccCCCCCCccchhccCCCCCCEEecCCCcCCCccccccc---CCCCCCEEECcCCcCCCCCccccccCCC--Cce
Q 038037 200 LLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIG---NLSSLKKLDLSQNRFFSELPTSIGNLGS--LKV 274 (798)
Q Consensus 200 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---~l~~L~~L~L~~n~i~~~~~~~~~~l~~--L~~ 274 (798)
|++|++++|.+.+..+..+..+++|+.|+++++.+.......+. ..++|++|++++|.+.+..+..|..++. |++
T Consensus 173 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~ 252 (680)
T 1ziw_A 173 LKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTM 252 (680)
T ss_dssp ESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCE
T ss_pred ccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCE
Confidence 99999999999998899999999999999999887533222221 3589999999999998888888888754 988
Q ss_pred eecCCCCcceEecCCccccccCCccccCCCCCCEEEcCCCCccccCCCCcCCCCCCcEEeccCccCcCCcchhcccccCC
Q 038037 275 LDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSL 354 (798)
Q Consensus 275 L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 354 (798)
|++++|++..+ .+..+..+++|++|++++|.+.+..+..|.++++|++|++++|...+.... ..++.+
T Consensus 253 L~Ls~n~l~~~----------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~--~~lp~i 320 (680)
T 1ziw_A 253 LDLSYNNLNVV----------GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL--ASLPKI 320 (680)
T ss_dssp EECTTSCCCEE----------CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC--------CCEE
T ss_pred EECCCCCcCcc----------CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccc--cccccc
Confidence 88888776654 467788999999999999999999999999999999999998765532211 111111
Q ss_pred cccccCCCChhhhcCCCCcEEeccCCcccCccchHHHhhcCCCCCeEEccccccc--ccccCCCCC-CccCccEEeeCCC
Q 038037 355 KALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLS--LLTKATSNT-TSQKFRYVGLRSC 431 (798)
Q Consensus 355 ~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~i~--~~~~~~~~~-~~~~L~~L~l~~~ 431 (798)
.. ..+..+++|++|++++|.+.+..+. .+..+++|++|++++|.+. .++...+.. ..++|+.|++++|
T Consensus 321 ~~-------~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n 391 (680)
T 1ziw_A 321 DD-------FSFQWLKCLEHLNMEDNDIPGIKSN--MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN 391 (680)
T ss_dssp CT-------TTTTTCTTCCEEECCSCCBCCCCTT--TTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTS
T ss_pred Ch-------hhcccCCCCCEEECCCCccCCCChh--HhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCC
Confidence 11 1577889999999999999887654 4688999999999999743 232222211 2368999999999
Q ss_pred CCCCc-chhhhCCCCccEEECCCCcccCCCCcccccccCcccceeeCCCCccccccCCCCCCCCcEEeccCCccCCCCCC
Q 038037 432 NLTEF-PNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPV 510 (798)
Q Consensus 432 ~l~~l-~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~ 510 (798)
+++.+ |..+..+++|+.|++++|.+.+.++...+. .+++|++|++++|++..+....+ .
T Consensus 392 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~-------------------~ 451 (680)
T 1ziw_A 392 KISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR-GLENIFEIYLSYNKYLQLTRNSF-------------------A 451 (680)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGT-TCTTCCEEECCSCSEEECCTTTT-------------------T
T ss_pred CCCeEChhhhhCCCCCCEEeCCCCcCccccCccccc-CcccccEEecCCCCcceeChhhh-------------------h
Confidence 99876 467888999999999999998766643332 78899999999998876654322 1
Q ss_pred CCccceEEEeecceee--cccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccc--------c
Q 038037 511 PPPETILYLVSNNSLT--GEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIP--------D 580 (798)
Q Consensus 511 ~~~~l~~l~l~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~--------~ 580 (798)
..+.++.+++++|.+. +..|..|..+++|++|++++|++++..+..+..++ +|++|++++|++++..+ .
T Consensus 452 ~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~~~~~ 530 (680)
T 1ziw_A 452 LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE-KLEILDLQHNNLARLWKHANPGGPIY 530 (680)
T ss_dssp TCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCGGGGSTTSTTSCCC
T ss_pred cCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcccc-ccCEEeCCCCCccccchhhccCCcch
Confidence 1234444444444444 35678889999999999999999988888888887 79999999999986533 2
Q ss_pred ccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcC-CC
Q 038037 581 TFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDC-GF 659 (798)
Q Consensus 581 ~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~-~~ 659 (798)
.|.++++|++|++++|+++.+.+..|.++++|++|+|++|+++.+.+..|..+++|+.|+|++|+++++.+..+ . .+
T Consensus 531 ~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~~~ 608 (680)
T 1ziw_A 531 FLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF--GPAF 608 (680)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHH--HHHH
T ss_pred hhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHh--cccc
Confidence 37889999999999999997666789999999999999999998888889999999999999999998755432 2 46
Q ss_pred CcccEEEccCCcCcCCCCh-hhhhcc
Q 038037 660 SKLHIIDLSNNRFTGKLPS-KSFLCW 684 (798)
Q Consensus 660 ~~L~~L~ls~N~l~~~~p~-~~~~~~ 684 (798)
++|+.+++++|++.|.++. .||..|
T Consensus 609 ~~L~~l~l~~N~~~c~c~~~~~~~~~ 634 (680)
T 1ziw_A 609 RNLTELDMRFNPFDCTCESIAWFVNW 634 (680)
T ss_dssp TTCSEEECTTCCCCBCCCCCSSEECC
T ss_pred cccCEEEccCCCcccCCccHHHHHHH
Confidence 8999999999999998885 666554
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.8e-52 Score=479.61 Aligned_cols=486 Identities=20% Similarity=0.201 Sum_probs=300.4
Q ss_pred ccCCCCchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCEEecCCCcCCCcccc
Q 038037 161 SIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPT 240 (798)
Q Consensus 161 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 240 (798)
.+.+..|.+|+++++|++|++++|.+++..+..|+++++|++|++++|.+.+..+..+..+++|++|++++|.+++....
T Consensus 68 ~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~ 147 (606)
T 3t6q_A 68 QIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLP 147 (606)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCC
T ss_pred ccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcc
Confidence 34445555666666666666666666666666666666666666666666655555566666666666666666653333
Q ss_pred cccCCCCCCEEECcCCcCCCCCccccccCCCCc--eeecCCCCcceEecCCccccccCCccccCCCCCCEEEcCCCCccc
Q 038037 241 SIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLK--VLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWG 318 (798)
Q Consensus 241 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~--~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~ 318 (798)
.+..+++|++|++++|.+.+..+..++.+++|+ +|++++|.+..+ .+..+. ..+|+.|++++|..
T Consensus 148 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~----------~~~~~~-~~~L~~L~l~~~~~-- 214 (606)
T 3t6q_A 148 KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGI----------EPGAFD-SAVFQSLNFGGTQN-- 214 (606)
T ss_dssp TTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEE----------CTTTTT-TCEEEEEECTTCSC--
T ss_pred cccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCcc----------ChhHhh-hccccccccCCchh--
Confidence 333466666666666666555555555555555 444444443332 122221 23444444444431
Q ss_pred cCCCCcCCCCCCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCcccCccchHHHhhcCC--
Q 038037 319 KVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLK-- 396 (798)
Q Consensus 319 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~-- 396 (798)
.+..+..+.++....+....+. .+....+... .+.++.
T Consensus 215 -~~~~~~~l~~~~l~~l~~~~~~-----------------------------~~~~~~i~~~----------~~~~l~~~ 254 (606)
T 3t6q_A 215 -LLVIFKGLKNSTIQSLWLGTFE-----------------------------DMDDEDISPA----------VFEGLCEM 254 (606)
T ss_dssp -HHHHHHHTTTCEEEEEECCCCT-----------------------------TSCCCCCCGG----------GGGGGGGS
T ss_pred -HHHHhhhccccchhheechhhc-----------------------------cccccccChh----------HhchhhcC
Confidence 1111222222221111111111 0000000000 011111
Q ss_pred CCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCcccccccCcccceee
Q 038037 397 NLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALN 476 (798)
Q Consensus 397 ~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ 476 (798)
+|+.|++++|.++.++... ....++|++|++++|.++.+|..+..+++|++|++++|.+.+..|..+. .+++|++|+
T Consensus 255 ~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~ 331 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNT-FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISAS--NFPSLTHLS 331 (606)
T ss_dssp EEEEEECTTCCCSSCCTTT-TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGG--GCTTCSEEE
T ss_pred ceeEEEeecCccCccCHHH-hccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhh--ccCcCCEEE
Confidence 3444555554444333221 1223455555555555555666666666777777777766655554444 556666666
Q ss_pred CCCCccccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCccccccc--C
Q 038037 477 LSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLL--P 554 (798)
Q Consensus 477 ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~--~ 554 (798)
+++|.+... ..+..+..+++|++|++++|.+++.. +
T Consensus 332 l~~n~~~~~------------------------------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 369 (606)
T 3t6q_A 332 IKGNTKRLE------------------------------------------LGTGCLENLENLRELDLSHDDIETSDCCN 369 (606)
T ss_dssp CCSCSSCCB------------------------------------------CCSSTTTTCTTCCEEECCSSCCCEEEEST
T ss_pred CCCCCcccc------------------------------------------cchhhhhccCcCCEEECCCCccccccCcc
Confidence 666544310 12234667788888888888887665 6
Q ss_pred hhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCc-cccCCCCCcEEeCCCCcCCccCCcccCCC
Q 038037 555 QCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPR-SLVNCSKLEFLDLGNNQISDTFPSWLGTL 633 (798)
Q Consensus 555 ~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~-~~~~l~~L~~L~L~~N~i~~~~~~~~~~l 633 (798)
..+..++ +|++|++++|++.+..|..|..+++|++|++++|++++..+. .|..+++|++|++++|++++..|..|..+
T Consensus 370 ~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 448 (606)
T 3t6q_A 370 LQLRNLS-HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGL 448 (606)
T ss_dssp TTTTTCT-TCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTC
T ss_pred hhcccCC-CCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCC
Confidence 6677776 688888888888878788888888888888888888866554 37788888888888888887778888888
Q ss_pred CCCCEEEccCcccccc-cCCCCCcCCCCcccEEEccCCcCcCCCChhhhhcchhchhccccccccccCCCCCCCCccccc
Q 038037 634 PNLNVLILRSNTFYGI-IKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDL 712 (798)
Q Consensus 634 ~~L~~L~L~~N~l~~~-~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (798)
++|++|++++|++.+. .+....+..+++|+.|++++|++++..|.. +.
T Consensus 449 ~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~------------------------------ 497 (606)
T 3t6q_A 449 PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA-FT------------------------------ 497 (606)
T ss_dssp TTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTT-TT------------------------------
T ss_pred CCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhh-hc------------------------------
Confidence 8888888888888763 222334567888888888888887544432 11
Q ss_pred hhccccceeeeccCcccccCCccCceeEEEcCCCcccccCchhhhcccCCCeEeCcCCccccCCCccccCCCCCCeEeCC
Q 038037 713 ISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLS 792 (798)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 792 (798)
-.+.|+.|+|++|++++..|..+..+++| .|+|++|++++.+|..|..+++|+.|+++
T Consensus 498 ---------------------~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 555 (606)
T 3t6q_A 498 ---------------------SLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLR 555 (606)
T ss_dssp ---------------------TCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECT
T ss_pred ---------------------cccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCC
Confidence 13668888888888888888888888888 89999999888888888888889999999
Q ss_pred CCcCCC
Q 038037 793 NNRFFF 798 (798)
Q Consensus 793 ~N~l~~ 798 (798)
+|++++
T Consensus 556 ~N~~~c 561 (606)
T 3t6q_A 556 QNPLDC 561 (606)
T ss_dssp TCCEEC
T ss_pred CCCccc
Confidence 988764
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=7.9e-52 Score=474.28 Aligned_cols=530 Identities=21% Similarity=0.208 Sum_probs=406.0
Q ss_pred CCCCeEEcCCCCCCCCCCchhccCCCCCcEEEccCCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCCchHHHHhc
Q 038037 69 VHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEK 148 (798)
Q Consensus 69 ~~L~~L~L~~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~ 148 (798)
+++++|++++|.+... .|..|+.+++|++|+|++|.+.+..|.+|.++++|++|++++|.+. ...+..+..
T Consensus 33 ~~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~--------~~~~~~~~~ 103 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI--------FMAETALSG 103 (606)
T ss_dssp TTCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCS--------EECTTTTSS
T ss_pred CcCcEEEccCCccCcC-ChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCccc--------ccChhhhcc
Confidence 3789999999998875 5778999999999999999998778889999999999999999732 223456788
Q ss_pred CCCCCEEEccCCccCCCCchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCC--E
Q 038037 149 LSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLK--E 226 (798)
Q Consensus 149 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~--~ 226 (798)
+++|++|++++|.+.+..+..++.+++|++|++++|.+.+.....+..+++|++|++++|.+.+..+..++.+++|+ .
T Consensus 104 l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~ 183 (606)
T 3t6q_A 104 PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLS 183 (606)
T ss_dssp CTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEE
T ss_pred cccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeE
Confidence 99999999999999887777888999999999999998876656666789999999999999888788888899998 8
Q ss_pred EecCCCcCCCcccccccCCCCCCEEECcCCcCCCCCccccccCCCCceeecCCCCcceEecCCccccccCCccccCCC--
Q 038037 227 LDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFS-- 304 (798)
Q Consensus 227 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~-- 304 (798)
|++++|.+++..|..+.. .+|+.|++++|. ..+..+..+.++....+....+..+ ....+ .+..+..+.
T Consensus 184 L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~--~~~~i---~~~~~~~l~~~ 254 (606)
T 3t6q_A 184 LNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDM--DDEDI---SPAVFEGLCEM 254 (606)
T ss_dssp EECTTCCCCEECTTTTTT-CEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTTS--CCCCC---CGGGGGGGGGS
T ss_pred EecCCCccCccChhHhhh-ccccccccCCch---hHHHHhhhccccchhheechhhccc--ccccc---ChhHhchhhcC
Confidence 899999998777766544 688999998886 3444555555554333322211111 00111 122222222
Q ss_pred CCCEEEcCCCCccccCCCCcCCCCCCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCcccC
Q 038037 305 SLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRG 384 (798)
Q Consensus 305 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~ 384 (798)
+|+.|++++|.+.+..+..|..+++|++|++++|.++. +|..+..+++|++|++++|.+..
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------------------lp~~l~~l~~L~~L~l~~n~l~~ 315 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-------------------LPSGLVGLSTLKKLVLSANKFEN 315 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSC-------------------CCSSCCSCTTCCEEECTTCCCSB
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCC-------------------CChhhcccccCCEEECccCCcCc
Confidence 68888888888877777778888888888888888762 23356777888888888888876
Q ss_pred ccchHHHhhcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCCc---chhhhCCCCccEEECCCCcccCCCC
Q 038037 385 MIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEF---PNFLKNQHHLVILDLSANRIHGKIP 461 (798)
Q Consensus 385 ~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l---~~~~~~~~~L~~L~ls~n~i~~~~~ 461 (798)
..+. .+..+++|+.|++++|.+...........+++|++|++++|.++.+ +..+..+++|++|++++|.+.+..+
T Consensus 316 ~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 393 (606)
T 3t6q_A 316 LCQI--SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT 393 (606)
T ss_dssp GGGG--CGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECT
T ss_pred Cchh--hhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCH
Confidence 6543 3577888888888888665222222233456677777777766655 4456677777777777777766656
Q ss_pred cccccccCcccceeeCCCCccccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCE
Q 038037 462 KWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKN 541 (798)
Q Consensus 462 ~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~ 541 (798)
..+. .+++|+.|++++|++.... .+..+..+++|++
T Consensus 394 ~~~~--~l~~L~~L~l~~n~l~~~~------------------------------------------~~~~~~~l~~L~~ 429 (606)
T 3t6q_A 394 EAFK--ECPQLELLDLAFTRLKVKD------------------------------------------AQSPFQNLHLLKV 429 (606)
T ss_dssp TTTT--TCTTCSEEECTTCCEECCT------------------------------------------TCCTTTTCTTCCE
T ss_pred HHhc--CCccCCeEECCCCcCCCcc------------------------------------------cchhhhCcccCCE
Confidence 5554 5566666666666554321 1234778899999
Q ss_pred EEeeCcccccccChhhhccccccceeecCCCccccc---cccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCC
Q 038037 542 LVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGT---IPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLG 618 (798)
Q Consensus 542 L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~---~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~ 618 (798)
|++++|.+++..|..+..++ +|++|++++|++++. .+..|..+++|++|++++|++++..|..|..+++|++|+++
T Consensus 430 L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 508 (606)
T 3t6q_A 430 LNLSHSLLDISSEQLFDGLP-ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLS 508 (606)
T ss_dssp EECTTCCCBTTCTTTTTTCT-TCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred EECCCCccCCcCHHHHhCCC-CCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECC
Confidence 99999999988888888887 799999999999763 23578999999999999999999989999999999999999
Q ss_pred CCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCChhhhhcch
Q 038037 619 NNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWD 685 (798)
Q Consensus 619 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~ 685 (798)
+|++++..|..|..+++| .|++++|+++++.+..+ ..+++|+.|++++|++.|.++..+|..|-
T Consensus 509 ~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~c~c~~~~~~~w~ 572 (606)
T 3t6q_A 509 HNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLL--PILSQQRTINLRQNPLDCTCSNIYFLEWY 572 (606)
T ss_dssp SSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGH--HHHHTSSEEECTTCCEECSGGGHHHHHHH
T ss_pred CCccCcCChhHhCccccc-EEECcCCcccccCHhhc--ccCCCCCEEeCCCCCccccCCcHHHHHHH
Confidence 999999999999999999 99999999998765533 56889999999999999999877766543
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.3e-50 Score=462.07 Aligned_cols=517 Identities=21% Similarity=0.190 Sum_probs=330.5
Q ss_pred CCCCEEEccCCccCCCCchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCEEec
Q 038037 150 SNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDL 229 (798)
Q Consensus 150 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 229 (798)
+++++|++++|.+.+..+..|.++++|++|++++|.++++.+.+|.++++|++|++++|.+.+..|..|+++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 45666666666666555556666666666666666666555556666666666666666666555666666666666666
Q ss_pred CCCcCCCcccccccCCCCCCEEECcCCcCCC-CCccccccCCCCceeecCCCCcceEecCCccccccCCccccCCCCC--
Q 038037 230 SANILSSELPTSIGNLSSLKKLDLSQNRFFS-ELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSL-- 306 (798)
Q Consensus 230 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L-- 306 (798)
++|.+++..+..++++++|++|++++|.+.+ ..|..|+.+++|++|++++|+++.+. +..+..+++|
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~----------~~~~~~l~~L~~ 181 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT----------VNDLQFLRENPQ 181 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEEC----------TTTTHHHHHCTT
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecC----------hhhhhhhhcccc
Confidence 6666665555556666666666666666644 34555666666655555555554432 3333333332
Q ss_pred --CEEEcCCCCccccCCCCcCCCCCCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCcccC
Q 038037 307 --KILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRG 384 (798)
Q Consensus 307 --~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~ 384 (798)
+++++++|.+.+..+..+... +|++|++++|.+.+.... ..+.+++.++.+++..+.+..
T Consensus 182 ~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~-----------------~~~~~l~~L~~l~l~~~~~~~ 243 (606)
T 3vq2_A 182 VNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMK-----------------TCLQNLAGLHVHRLILGEFKD 243 (606)
T ss_dssp CCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHH-----------------HHHHTTTTCEEEEEEEECCTT
T ss_pred ccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHH-----------------HHhcccccccccccccccccc
Confidence 356666666554444444333 556666665555421111 134444455544443322211
Q ss_pred ccchHHHhhcCCCCCeEEcccccccccccCCCCCCccCccEEee-CCCCCCCcchhhhCCCCccEEECCCCcccCCCCcc
Q 038037 385 MIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGL-RSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKW 463 (798)
Q Consensus 385 ~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l-~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~ 463 (798)
... +..+. .. .........++.+++ ..+.+......+..+++|+.|++++|.+.. +| .
T Consensus 244 ~~~----------l~~~~--~~-------~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~-~ 302 (606)
T 3vq2_A 244 ERN----------LEIFE--PS-------IMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY-LE-D 302 (606)
T ss_dssp SCC----------CSCCC--GG-------GGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCC-CC-C
T ss_pred CCc----------ccccC--hH-------HhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchh-hh-h
Confidence 100 00000 00 000001113444455 334443332235666677777777776643 33 2
Q ss_pred cccccCcccceeeCCCCccccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEE
Q 038037 464 LLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLV 543 (798)
Q Consensus 464 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~ 543 (798)
+. .+++|+.|++++|.+..++.. . .+.++.+++++|...+.. .+..+++|++|+
T Consensus 303 l~--~~~~L~~L~l~~n~l~~lp~~-~---------------------l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ 356 (606)
T 3vq2_A 303 VP--KHFKWQSLSIIRCQLKQFPTL-D---------------------LPFLKSLTLTMNKGSISF--KKVALPSLSYLD 356 (606)
T ss_dssp CC--TTCCCSEEEEESCCCSSCCCC-C---------------------CSSCCEEEEESCSSCEEC--CCCCCTTCCEEE
T ss_pred cc--ccccCCEEEcccccCcccccC-C---------------------CCccceeeccCCcCccch--hhccCCCCCEEE
Confidence 22 556666666666666555433 3 345555555555433332 566788999999
Q ss_pred eeCccccccc--ChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCC-ccccCCCCCcEEeCCCC
Q 038037 544 LSHNSLSGLL--PQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIP-RSLVNCSKLEFLDLGNN 620 (798)
Q Consensus 544 Ls~n~i~~~~--~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~-~~~~~l~~L~~L~L~~N 620 (798)
+++|.+++.. +..+..++ +|++|++++|.+++ .|..|..+++|++|++++|++.+..| ..|..+++|++|++++|
T Consensus 357 ls~n~l~~~~~~~~~~~~~~-~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 434 (606)
T 3vq2_A 357 LSRNALSFSGCCSYSDLGTN-SLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434 (606)
T ss_dssp CCSSCEEEEEECCHHHHCCS-CCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTS
T ss_pred CcCCccCCCcchhhhhccCC-cccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCC
Confidence 9999988663 77777877 79999999999885 45788889999999999999987777 67888999999999999
Q ss_pred cCCccCCcccCCCCCCCEEEccCccccc-ccCCCCCcCCCCcccEEEccCCcCcCCCChhhhhcchhchhcccccccccc
Q 038037 621 QISDTFPSWLGTLPNLNVLILRSNTFYG-IIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQ 699 (798)
Q Consensus 621 ~i~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~~~~~~~ 699 (798)
++++..|..|..+++|++|++++|++.+ ..+..+ ..+++|+.|++++|++++..|.. +.
T Consensus 435 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~-~~----------------- 494 (606)
T 3vq2_A 435 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF--ANTTNLTFLDLSKCQLEQISWGV-FD----------------- 494 (606)
T ss_dssp CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC--TTCTTCCEEECTTSCCCEECTTT-TT-----------------
T ss_pred CCCccchhhhcCCCCCCEEECCCCcCCCcchHHhh--ccCCCCCEEECCCCcCCccChhh-hc-----------------
Confidence 9988888889999999999999999887 344433 67899999999999988544432 11
Q ss_pred CCCCCCCCccccchhccccceeeeccCcccccCCccCceeEEEcCCCcccccCchhhhcccCCCeEeCcCCccccCCCcc
Q 038037 700 DVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSC 779 (798)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 779 (798)
-.+.|+.|+|++|++++..|..|..+++|++|+|++|+++. +|..
T Consensus 495 ----------------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~p~~ 539 (606)
T 3vq2_A 495 ----------------------------------TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET-SKGI 539 (606)
T ss_dssp ----------------------------------TCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCC-EESC
T ss_pred ----------------------------------ccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcc-cCHh
Confidence 04678899999999999889999999999999999999985 5555
Q ss_pred ccCCC-CCCeEeCCCCcCCC
Q 038037 780 LGNLT-NLESLDLSNNRFFF 798 (798)
Q Consensus 780 ~~~l~-~L~~L~Ls~N~l~~ 798 (798)
+..++ +|+.|++++|++++
T Consensus 540 ~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 540 LQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp GGGSCTTCCEEECCSCCCCC
T ss_pred HhhhcccCcEEEccCCCccc
Confidence 88887 59999999999864
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.5e-50 Score=459.66 Aligned_cols=540 Identities=21% Similarity=0.190 Sum_probs=326.2
Q ss_pred CeEEcCCCCCCCCCCchhccCCCCCcEEEccCCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCCchHHHHhcCCC
Q 038037 72 EWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSN 151 (798)
Q Consensus 72 ~~L~L~~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~~ 151 (798)
++++.+++.+.. +|..+. +++++|++++|.+++..+..|.++++|++|++++|.+.. ..+..+.++++
T Consensus 14 ~~~~c~~~~l~~--ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--------i~~~~~~~l~~ 81 (606)
T 3vq2_A 14 ITYQCMDQKLSK--VPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET--------IEDKAWHGLHH 81 (606)
T ss_dssp TEEECTTSCCSS--CCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE--------ECTTTTTTCTT
T ss_pred CceEccCCCccc--CCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccc--------cCHHHhhchhh
Confidence 467777776665 565443 678888888888776666677777777777777775211 11234555666
Q ss_pred CCEEEccCCccCCCCchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCC-ccchhccCCCCCCEEecC
Q 038037 152 LETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRG-ELLVSIGNLHSLKELDLS 230 (798)
Q Consensus 152 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~ 230 (798)
|++|++++|.+.+..|..|+++++|++|++++|.+++..+..|+++++|++|++++|.+.+ ..|..++++++|++|+++
T Consensus 82 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls 161 (606)
T 3vq2_A 82 LSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLS 161 (606)
T ss_dssp CCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECC
T ss_pred cCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEcc
Confidence 6666666666655555566666666666666666655555555666666666666665554 235555555555555555
Q ss_pred CCcCCCcccccccCCCCC----CEEECcCCcCCCCCccccccCCCCceeecCCCCcceEecCCccccccCCccccCCCCC
Q 038037 231 ANILSSELPTSIGNLSSL----KKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSL 306 (798)
Q Consensus 231 ~n~l~~~~~~~~~~l~~L----~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L 306 (798)
+|.+++..+..+..+.+| ++|++++|.+....+..+... +|
T Consensus 162 ~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L---------------------------------- 206 (606)
T 3vq2_A 162 YNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KL---------------------------------- 206 (606)
T ss_dssp SSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EE----------------------------------
T ss_pred CCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCc-ee----------------------------------
Confidence 555555444444443333 255555555544333333222 44
Q ss_pred CEEEcCCCCcc-ccCCCCcCCCCCCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEec-cCCcccC
Q 038037 307 KILDLRSCSFW-GKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSL-SQNSYRG 384 (798)
Q Consensus 307 ~~L~L~~n~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l-~~n~l~~ 384 (798)
+.|++++|.+. +..|..+..++.++.+++..+.+.+.... ..+.. ..+..+..+ .++.+++ ..+.+.+
T Consensus 207 ~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l-----~~~~~----~~~~~l~~l-~l~~l~l~~~~~~~~ 276 (606)
T 3vq2_A 207 HELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL-----EIFEP----SIMEGLCDV-TIDEFRLTYTNDFSD 276 (606)
T ss_dssp EEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCC-----SCCCG----GGGTTGGGS-EEEEEEECCCTTCCG
T ss_pred eeeeccCCccchhHHHHHhccccccccccccccccccCCcc-----cccCh----HHhhhhhhc-cHhheeccccccccc
Confidence 44444444432 12233344444444444433322211000 00000 000001111 2233333 2222222
Q ss_pred ccchHHHhhcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCccc
Q 038037 385 MIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWL 464 (798)
Q Consensus 385 ~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~ 464 (798)
..+. +..+++|+.|++++|.+..++ .....++|++|++++|.++.+|.. .+++|+.|++++|...+.. .+
T Consensus 277 ~~~~---~~~l~~L~~L~l~~~~~~~l~---~l~~~~~L~~L~l~~n~l~~lp~~--~l~~L~~L~l~~n~~~~~~--~~ 346 (606)
T 3vq2_A 277 DIVK---FHCLANVSAMSLAGVSIKYLE---DVPKHFKWQSLSIIRCQLKQFPTL--DLPFLKSLTLTMNKGSISF--KK 346 (606)
T ss_dssp GGGS---CGGGTTCSEEEEESCCCCCCC---CCCTTCCCSEEEEESCCCSSCCCC--CCSSCCEEEEESCSSCEEC--CC
T ss_pred cccc---cccCCCCCEEEecCccchhhh---hccccccCCEEEcccccCcccccC--CCCccceeeccCCcCccch--hh
Confidence 2211 234444444444444443333 122233444444444444444422 4444444444444322211 11
Q ss_pred ccccCcccceeeCCCCccccccC----CCCCCCCcEEeccCCccCCCC--CCCCccceEEEeecceeecccC-ccccCCC
Q 038037 465 LDPSMQYLNALNLSHNLLTRFDQ----HPAVLPGKTFDFSSNNLQGPL--PVPPPETILYLVSNNSLTGEIP-SWICNLN 537 (798)
Q Consensus 465 ~~~~l~~L~~L~ls~n~l~~~~~----~~~~~~l~~l~l~~n~l~~~~--~~~~~~l~~l~l~~n~l~~~~~-~~~~~l~ 537 (798)
. .+++|++|++++|.++.... ....+.++.+++++|.+.+.. ....++++.+++++|++.+..+ ..+..++
T Consensus 347 ~--~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 424 (606)
T 3vq2_A 347 V--ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE 424 (606)
T ss_dssp C--CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCT
T ss_pred c--cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccc
Confidence 1 34444455555444443321 112344455555555444332 2235678888888888888877 6889999
Q ss_pred CCCEEEeeCcccccccChhhhccccccceeecCCCcccc-ccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEe
Q 038037 538 TLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFG-TIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLD 616 (798)
Q Consensus 538 ~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~ 616 (798)
+|++|++++|.+++..|..+..++ +|++|++++|++++ ..|..|..+++|++|++++|++++..|..|.++++|++|+
T Consensus 425 ~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 503 (606)
T 3vq2_A 425 KLLYLDISYTNTKIDFDGIFLGLT-SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN 503 (606)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCT-TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cCCEEECcCCCCCccchhhhcCCC-CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEE
Confidence 999999999999998999999988 79999999999997 4788999999999999999999999999999999999999
Q ss_pred CCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCC-cccEEEccCCcCcCCCChhhhhcc
Q 038037 617 LGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFS-KLHIIDLSNNRFTGKLPSKSFLCW 684 (798)
Q Consensus 617 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~-~L~~L~ls~N~l~~~~p~~~~~~~ 684 (798)
+++|++++..|..|..+++|++|+|++|+++.+++. +..++ +|+.|++++|++.|.++..+|..|
T Consensus 504 Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~---~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~ 569 (606)
T 3vq2_A 504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI---LQHFPKSLAFFNLTNNSVACICEHQKFLQW 569 (606)
T ss_dssp CCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESC---GGGSCTTCCEEECCSCCCCCSSTTHHHHTT
T ss_pred CCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHh---HhhhcccCcEEEccCCCcccCCccHHHHHH
Confidence 999999999899999999999999999999977544 35565 699999999999999998877655
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.4e-49 Score=468.18 Aligned_cols=526 Identities=22% Similarity=0.252 Sum_probs=301.1
Q ss_pred CeEEEEEcCCCCccCcccCcccccccCCCCeEEcCCCCCCCCCCchhccCCCCCcEEEccCCCCCCCCchhhhcCCCCcE
Q 038037 43 GHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVS 122 (798)
Q Consensus 43 ~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~ 122 (798)
+++++|+|++|.+.+..+. .+..+++|++|+|++|.......|..|+++++|++|+|++|.+.+..|.+|..+++|++
T Consensus 24 ~~l~~LdLs~N~i~~i~~~--~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTAS--SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp TTCCEEEEESCCCCEECSS--SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCcCEEECCCCcCCccChh--HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 4455555555554433333 44555555555555553322211344555555555555555554444555555555555
Q ss_pred EEccCCCCCCCccccCCCchHHHHhcCCCCCEEEccCCccCCCCchh--ccCCCCCCEEeccccccCccCc-ccccCCCC
Q 038037 123 LDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHN--LANLSSLSFVSLRNCELEGRIL-SSFGNLSK 199 (798)
Q Consensus 123 L~l~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~l~~~~~-~~~~~l~~ 199 (798)
|++++| .+.+..+.. |+.+++|++|++++|.+++..+ ..|+++++
T Consensus 102 L~Ls~n--------------------------------~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~ 149 (844)
T 3j0a_A 102 LRLYFC--------------------------------GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNS 149 (844)
T ss_dssp EECTTC--------------------------------CCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSS
T ss_pred eeCcCC--------------------------------CCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCC
Confidence 555555 444332222 4445555555555555444332 34455555
Q ss_pred CcEEEccCCCCCCccchhccCC--CCCCEEecCCCcCCCcccccccCCCC------CCEEECcCCcCCCCCccccccC--
Q 038037 200 LLHLDLSLNELRGELLVSIGNL--HSLKELDLSANILSSELPTSIGNLSS------LKKLDLSQNRFFSELPTSIGNL-- 269 (798)
Q Consensus 200 L~~L~Ls~n~i~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~------L~~L~L~~n~i~~~~~~~~~~l-- 269 (798)
|++|++++|.+.+..+..+..+ ++|+.|++++|.+.+..+..+..+++ |+.|++++|.+....+..+...
T Consensus 150 L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~ 229 (844)
T 3j0a_A 150 LKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAIS 229 (844)
T ss_dssp CCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSC
T ss_pred CCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcC
Confidence 5555555555544444444443 45555555555555444444433333 5555555555544444333321
Q ss_pred -CCCceeecCCCCcceEecCCccccccCCccccCC--CCCCEEEcCCCCccccCCCCcCCCCCCcEEeccCccCcCCcch
Q 038037 270 -GSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNF--SSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLG 346 (798)
Q Consensus 270 -~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l--~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 346 (798)
..++.+.++.+.+. -....+.+.+.....+..+ ++|+.|++++|.+.+..+..|..+++|+.|++++|.+.+..+.
T Consensus 230 ~~~l~~L~l~~~~~~-~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~ 308 (844)
T 3j0a_A 230 KSQAFSLILAHHIMG-AGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE 308 (844)
T ss_dssp SCCBSEEECCSSCCB-CSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTT
T ss_pred cccccceeccccccc-ccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChH
Confidence 33444444322211 1111222222222233332 5666666666666666666666666666666666666554433
Q ss_pred hcccccCCcccccCCCChhhhcCCCCcEEeccCCcccCccchHHHhhcCCCCCeEEcccccccccccCCCCCCccCccEE
Q 038037 347 SIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYV 426 (798)
Q Consensus 347 ~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L 426 (798)
.+..+++|++|++++|.+....+. .+..+++|+.|++++|.+..++... ....++|++|
T Consensus 309 ------------------~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~L~~N~i~~~~~~~-~~~l~~L~~L 367 (844)
T 3j0a_A 309 ------------------AFYGLDNLQVLNLSYNLLGELYSS--NFYGLPKVAYIDLQKNHIAIIQDQT-FKFLEKLQTL 367 (844)
T ss_dssp ------------------TTTTCSSCCEEEEESCCCSCCCSC--SCSSCTTCCEEECCSCCCCCCCSSC-SCSCCCCCEE
T ss_pred ------------------HhcCCCCCCEEECCCCCCCccCHH--HhcCCCCCCEEECCCCCCCccChhh-hcCCCCCCEE
Confidence 455556666666666666554332 2456666666666666665544322 2334556666
Q ss_pred eeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCcccccccCcccceeeCCCCccccccCCCCCCCCcEEeccCCccCC
Q 038037 427 GLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQG 506 (798)
Q Consensus 427 ~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~ 506 (798)
++++|.++.++. +++|+.|++++|++.. +|. ....++.+++++|++..++.
T Consensus 368 ~Ls~N~l~~i~~----~~~L~~L~l~~N~l~~-l~~-----~~~~l~~L~ls~N~l~~l~~------------------- 418 (844)
T 3j0a_A 368 DLRDNALTTIHF----IPSIPDIFLSGNKLVT-LPK-----INLTANLIHLSENRLENLDI------------------- 418 (844)
T ss_dssp EEETCCSCCCSS----CCSCSEEEEESCCCCC-CCC-----CCTTCCEEECCSCCCCSSTT-------------------
T ss_pred ECCCCCCCcccC----CCCcchhccCCCCccc-ccc-----cccccceeecccCccccCch-------------------
Confidence 666666554443 4566666666666652 222 12345555555555443221
Q ss_pred CCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccCh-hhhccccccceeecCCCccc-----ccccc
Q 038037 507 PLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQ-CLGNFSDELAVLDLQGNNFF-----GTIPD 580 (798)
Q Consensus 507 ~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~~~~~L~~L~L~~n~i~-----~~~~~ 580 (798)
+..+..+++|++|++++|++++..+. .+..++ +|++|++++|.++ +..+.
T Consensus 419 -----------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~~~~~ 474 (844)
T 3j0a_A 419 -----------------------LYFLLRVPHLQILILNQNRFSSCSGDQTPSENP-SLEQLFLGENMLQLAWETELCWD 474 (844)
T ss_dssp -----------------------HHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCT-TCCBCEEESCCCSSSCCSCCCSS
T ss_pred -----------------------hhhhhcCCccceeeCCCCcccccccccccccCC-ccccccCCCCccccccccccchh
Confidence 12344677788888888887755433 233333 6888888888876 34456
Q ss_pred ccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCC
Q 038037 581 TFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFS 660 (798)
Q Consensus 581 ~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~ 660 (798)
.|.++++|++|+|++|.+++..|..|.++++|++|+|++|+++++.+..+. ++|+.|+|++|++++..+.. +.
T Consensus 475 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~-----~~ 547 (844)
T 3j0a_A 475 VFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV-----FV 547 (844)
T ss_dssp CSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC-----CS
T ss_pred hhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH-----hC
Confidence 788899999999999999988888899999999999999999987777766 79999999999999886654 35
Q ss_pred cccEEEccCCcCcCCCChhhhhcc
Q 038037 661 KLHIIDLSNNRFTGKLPSKSFLCW 684 (798)
Q Consensus 661 ~L~~L~ls~N~l~~~~p~~~~~~~ 684 (798)
+|+.+++++|++.|.++..+|..|
T Consensus 548 ~L~~l~l~~Np~~C~c~~~~f~~~ 571 (844)
T 3j0a_A 548 SLSVLDITHNKFICECELSTFINW 571 (844)
T ss_dssp SCCEEEEEEECCCCSSSCCSHHHH
T ss_pred CcCEEEecCCCcccccccHHHHHH
Confidence 899999999999998887666554
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.3e-46 Score=444.89 Aligned_cols=504 Identities=25% Similarity=0.270 Sum_probs=380.2
Q ss_pred eEEcCCCCCCCCCCchhccCCCCCcEEEccCCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCCch-HHHHhcCCC
Q 038037 73 WLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNL-ANLVEKLSN 151 (798)
Q Consensus 73 ~L~L~~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l-~~~~~~l~~ 151 (798)
+.+.+++.++. +|. ..++|++|+|++|.+++..|..|.++++|++|++++|... ..+ +..+.++++
T Consensus 8 ~~dcs~~~L~~--vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~--------~~i~~~~f~~L~~ 74 (844)
T 3j0a_A 8 IAFYRFCNLTQ--VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP--------LTIDKEAFRNLPN 74 (844)
T ss_dssp EEEESCCCSSC--CCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCC--------CEECTTTTSSCTT
T ss_pred EEEccCCCCCC--CCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCc--------cccCHHHhcCCCC
Confidence 44555555554 454 4467888888888887777778888888888888887421 222 456778888
Q ss_pred CCEEEccCCccCCCCchhccCCCCCCEEeccccccCccCccc--ccCCCCCcEEEccCCCCCCccc-hhccCCCCCCEEe
Q 038037 152 LETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSS--FGNLSKLLHLDLSLNELRGELL-VSIGNLHSLKELD 228 (798)
Q Consensus 152 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~--~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~ 228 (798)
|++|++++|.+.+..|.+|+++++|++|++++|.+++..+.. |.++++|++|++++|.+.+..+ ..|+++++|++|+
T Consensus 75 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~ 154 (844)
T 3j0a_A 75 LRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSID 154 (844)
T ss_dssp CCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEE
T ss_pred CCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEE
Confidence 888888888898888999999999999999999998755544 8999999999999999987654 5789999999999
Q ss_pred cCCCcCCCcccccccCC--CCCCEEECcCCcCCCCCccccccCCC------CceeecCCCCcceEecCCccccccCCccc
Q 038037 229 LSANILSSELPTSIGNL--SSLKKLDLSQNRFFSELPTSIGNLGS------LKVLDLSRNGLFELHLSFNKFSGEFPWST 300 (798)
Q Consensus 229 L~~n~l~~~~~~~~~~l--~~L~~L~L~~n~i~~~~~~~~~~l~~------L~~L~l~~n~l~~l~l~~~~~~~~~~~~~ 300 (798)
+++|.+++..+..+..+ ++|+.|++++|.+.+..+..+..+++ |++|++++| .+.+..+..+
T Consensus 155 Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n----------~l~~~~~~~~ 224 (844)
T 3j0a_A 155 FSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGN----------GWTVDITGNF 224 (844)
T ss_dssp EESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSC----------CSSTTTTSGG
T ss_pred CCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCC----------cCchhHHHHH
Confidence 99999998888888877 89999999999998888877776665 655555554 4444444444
Q ss_pred cC---CCCCCEEEcCCCC---------ccccCCCCcCCC--CCCcEEeccCccCcCCcchhcccccCCcccccCCCChhh
Q 038037 301 RN---FSSLKILDLRSCS---------FWGKVPHSIGNF--TRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSL 366 (798)
Q Consensus 301 ~~---l~~L~~L~L~~n~---------~~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~ 366 (798)
.. ...++.+.+..+. +.......|.++ ++|+.|++++|.+.+..+. .+
T Consensus 225 ~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~------------------~~ 286 (844)
T 3j0a_A 225 SNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR------------------VF 286 (844)
T ss_dssp GGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSC------------------CS
T ss_pred HhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChh------------------hh
Confidence 33 3578888887433 222333445554 7899999999998865544 67
Q ss_pred hcCCCCcEEeccCCcccCccchHHHhhcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcchhhhCCCCc
Q 038037 367 RNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHL 446 (798)
Q Consensus 367 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L 446 (798)
..+++|+.|++++|.+....+. .+..+++|+.|++++|.++.+. |..+..+++|
T Consensus 287 ~~l~~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~------------------------~~~~~~l~~L 340 (844)
T 3j0a_A 287 ETLKDLKVLNLAYNKINKIADE--AFYGLDNLQVLNLSYNLLGELY------------------------SSNFYGLPKV 340 (844)
T ss_dssp SSCCCCCEEEEESCCCCEECTT--TTTTCSSCCEEEEESCCCSCCC------------------------SCSCSSCTTC
T ss_pred hcCCCCCEEECCCCcCCCCChH--HhcCCCCCCEEECCCCCCCccC------------------------HHHhcCCCCC
Confidence 7889999999999999877554 3577888888888888665442 2345566667
Q ss_pred cEEECCCCcccCCCCcccccccCcccceeeCCCCccccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceee
Q 038037 447 VILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLT 526 (798)
Q Consensus 447 ~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~ 526 (798)
+.|++++|.+....+..+. .+++|++|++++|.++.++. .++++.+ ++++|+++
T Consensus 341 ~~L~L~~N~i~~~~~~~~~--~l~~L~~L~Ls~N~l~~i~~---~~~L~~L---------------------~l~~N~l~ 394 (844)
T 3j0a_A 341 AYIDLQKNHIAIIQDQTFK--FLEKLQTLDLRDNALTTIHF---IPSIPDI---------------------FLSGNKLV 394 (844)
T ss_dssp CEEECCSCCCCCCCSSCSC--SCCCCCEEEEETCCSCCCSS---CCSCSEE---------------------EEESCCCC
T ss_pred CEEECCCCCCCccChhhhc--CCCCCCEEECCCCCCCcccC---CCCcchh---------------------ccCCCCcc
Confidence 7777777766655554443 56667777777776665432 2333333 44444444
Q ss_pred cccCccccCCCCCCEEEeeCcccccccCh-hhhccccccceeecCCCcccccccc-ccccCCCccEEEcCCCccc-----
Q 038037 527 GEIPSWICNLNTLKNLVLSHNSLSGLLPQ-CLGNFSDELAVLDLQGNNFFGTIPD-TFIKESRLGVIDLSHNLFQ----- 599 (798)
Q Consensus 527 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~~~~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~N~i~----- 599 (798)
.+|.. ..+++.|++++|.+++.... .+..++ +|++|++++|++++..+. .+..+++|++|++++|.++
T Consensus 395 -~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~ 469 (844)
T 3j0a_A 395 -TLPKI---NLTANLIHLSENRLENLDILYFLLRVP-HLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWET 469 (844)
T ss_dssp -CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCT-TCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCS
T ss_pred -ccccc---ccccceeecccCccccCchhhhhhcCC-ccceeeCCCCcccccccccccccCCccccccCCCCcccccccc
Confidence 22322 45789999999999875432 234666 799999999999876544 4667899999999999997
Q ss_pred ccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCCh
Q 038037 600 GRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPS 678 (798)
Q Consensus 600 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~ 678 (798)
+..+..|.++++|++|+|++|++++..|..|..+++|+.|+|++|+++++.+..+. ++|+.|++++|++++..|.
T Consensus 470 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~----~~L~~L~Ls~N~l~~~~~~ 544 (844)
T 3j0a_A 470 ELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP----ANLEILDISRNQLLAPNPD 544 (844)
T ss_dssp CCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC----SCCCEEEEEEECCCCCCSC
T ss_pred ccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh----ccccEEECCCCcCCCCChh
Confidence 34456788999999999999999999999999999999999999999998766542 7999999999999976653
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=9.6e-46 Score=421.02 Aligned_cols=494 Identities=24% Similarity=0.272 Sum_probs=296.0
Q ss_pred CCCCEEEccCCccCCCCchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCEEec
Q 038037 150 SNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDL 229 (798)
Q Consensus 150 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 229 (798)
+++++|++++|.+++..+.+|.++++|++|++++|.++++.+.+|.++++|++|++++|.+.+..+..|.++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 46777777777777666667777777777777777777766677777777777777777777666677777777777777
Q ss_pred CCCcCCCcccccccCCCCCCEEECcCCcCCC-CCccccccCCCCceeecCCCCcceEecCCccccccCCccccCCCCC--
Q 038037 230 SANILSSELPTSIGNLSSLKKLDLSQNRFFS-ELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSL-- 306 (798)
Q Consensus 230 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L-- 306 (798)
++|.+++..+..++.+++|++|++++|.+.. ..|..|+.+++|++|++++|+++.+. +..+..+++|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~----------~~~~~~l~~L~~ 177 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY----------CTDLRVLHQMPL 177 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEEC----------GGGGHHHHTCTT
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceec----------HHHccchhccch
Confidence 7777776555567777777777777777755 34667777777777777666665542 3345555555
Q ss_pred --CEEEcCCCCccccCCCCcCCCCCCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCcccC
Q 038037 307 --KILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRG 384 (798)
Q Consensus 307 --~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~ 384 (798)
+.+++++|.+.+..+..+... +|+.|++++|...... ++..+..++.++...+....+..
T Consensus 178 ~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~-----------------~~~~~~~l~~l~~~~l~~~~~~~ 239 (570)
T 2z63_A 178 LNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNV-----------------MKTCIQGLAGLEVHRLVLGEFRN 239 (570)
T ss_dssp CCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTH-----------------HHHHHHTTTTCEEEEEEEEECCC
T ss_pred hhhhcccCCCCceecCHHHhccC-cceeEecccccccccc-----------------hhhhhcCccccceeeeccccccC
Confidence 677777777766666666544 6777777766433211 11134445555444433221111
Q ss_pred ccchHHHhhcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCC-CC-CCcchhhhCCCCccEEECCCCcccCCCCc
Q 038037 385 MIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSC-NL-TEFPNFLKNQHHLVILDLSANRIHGKIPK 462 (798)
Q Consensus 385 ~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~-~l-~~l~~~~~~~~~L~~L~ls~n~i~~~~~~ 462 (798)
. ..++. +....+... ....++.+++.++ .+ ..+|..+..+++|+.|++++|.+. .+|.
T Consensus 240 ~----------~~l~~--~~~~~~~~l-------~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~ 299 (570)
T 2z63_A 240 E----------GNLEK--FDKSALEGL-------CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKD 299 (570)
T ss_dssp C----------SSCEE--CCTTTTGGG-------GGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCB
T ss_pred c----------hhhhh--cchhhhccc-------cccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhh
Confidence 0 00000 000000000 0012334444433 22 233445555666666666666665 3444
Q ss_pred ccccccCcccceeeCCCCccccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEE
Q 038037 463 WLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNL 542 (798)
Q Consensus 463 ~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L 542 (798)
.+. .+ +|+.|++++|.+..++ . ..+++|++|
T Consensus 300 ~~~--~~-~L~~L~l~~n~~~~l~--------------------------------------------~--~~l~~L~~L 330 (570)
T 2z63_A 300 FSY--NF-GWQHLELVNCKFGQFP--------------------------------------------T--LKLKSLKRL 330 (570)
T ss_dssp CCS--CC-CCSEEEEESCBCSSCC--------------------------------------------B--CBCSSCCEE
T ss_pred hhc--cC-CccEEeeccCcccccC--------------------------------------------c--ccccccCEE
Confidence 433 33 5555555555544322 1 234556666
Q ss_pred EeeCcccccccChhhhccccccceeecCCCcccccc--ccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCC
Q 038037 543 VLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTI--PDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNN 620 (798)
Q Consensus 543 ~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N 620 (798)
++++|.+.+..+. ..++ +|++|++++|.+++.. +..+.++++|++|++++|.+++..+. +..+++|++|++++|
T Consensus 331 ~l~~n~~~~~~~~--~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n 406 (570)
T 2z63_A 331 TFTSNKGGNAFSE--VDLP-SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHS 406 (570)
T ss_dssp EEESCBSCCBCCC--CBCT-TCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTS
T ss_pred eCcCCcccccccc--ccCC-CCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCC
Confidence 6666666544433 3343 5666666666665443 45566666677777777766644333 666677777777777
Q ss_pred cCCccCC-cccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCc-CCCChhhhhcchhchhccccccccc
Q 038037 621 QISDTFP-SWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFT-GKLPSKSFLCWDAMKIVNTTELRYL 698 (798)
Q Consensus 621 ~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~-~~~p~~~~~~~~~l~~~~~~~~~~~ 698 (798)
++.+..+ ..|..+++|++|++++|.+.+..+..+ ..+++|+.|++++|+++ +.+|.. +
T Consensus 407 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~p~~-~----------------- 466 (570)
T 2z63_A 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF--NGLSSLEVLKMAGNSFQENFLPDI-F----------------- 466 (570)
T ss_dssp EEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTT--TTCTTCCEEECTTCEEGGGEECSC-C-----------------
T ss_pred ccccccchhhhhcCCCCCEEeCcCCcccccchhhh--hcCCcCcEEECcCCcCccccchhh-h-----------------
Confidence 6665544 356666777777777776666544433 55667777777777665 223311 0
Q ss_pred cCCCCCCCCccccchhccccceeeeccCcccccCCccCceeEEEcCCCcccccCchhhhcccCCCeEeCcCCccccCCCc
Q 038037 699 QDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPS 778 (798)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 778 (798)
...+.|+.|++++|++++..|..|..+++|++|+|++|++++.+|.
T Consensus 467 ----------------------------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 512 (570)
T 2z63_A 467 ----------------------------------TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG 512 (570)
T ss_dssp ----------------------------------TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ----------------------------------hcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHH
Confidence 0135677777777777777777777777777777777777777777
Q ss_pred cccCCCCCCeEeCCCCcCCC
Q 038037 779 CLGNLTNLESLDLSNNRFFF 798 (798)
Q Consensus 779 ~~~~l~~L~~L~Ls~N~l~~ 798 (798)
.|..+++|+.|++++|+++|
T Consensus 513 ~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 513 IFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp TTTTCTTCCEEECCSSCBCC
T ss_pred HhhcccCCcEEEecCCcccC
Confidence 77777777777777777764
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.1e-45 Score=418.22 Aligned_cols=490 Identities=19% Similarity=0.185 Sum_probs=307.4
Q ss_pred EEEccCCccCCCCchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCEEecCCCc
Q 038037 154 TLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANI 233 (798)
Q Consensus 154 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 233 (798)
+.+.+++.++. +|..+. +.|++|++++|.+++..+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.
T Consensus 9 ~c~~~~~~l~~-ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 85 (549)
T 2z81_A 9 VCDGRSRSFTS-IPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 85 (549)
T ss_dssp EEECTTSCCSS-CCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred eEECCCCcccc-ccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc
Confidence 34555555553 333332 567777777777776666667777777777777777776666667777777777777777
Q ss_pred CCCcccccccCCCCCCEEECcCCcCCCC-CccccccCCCCceeecCCCC-cceEecCCccccccCCccccCCCCCCEEEc
Q 038037 234 LSSELPTSIGNLSSLKKLDLSQNRFFSE-LPTSIGNLGSLKVLDLSRNG-LFELHLSFNKFSGEFPWSTRNFSSLKILDL 311 (798)
Q Consensus 234 l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~-l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L 311 (798)
+++..+.+|+++++|++|++++|.+.+. .|..++.+++|++|++++|. +..+ .+..+..+++|++|++
T Consensus 86 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~----------~~~~~~~l~~L~~L~L 155 (549)
T 2z81_A 86 LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEI----------RRIDFAGLTSLNELEI 155 (549)
T ss_dssp CCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE----------CTTTTTTCCEEEEEEE
T ss_pred cCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCcccccc----------CHhhhhcccccCeeec
Confidence 7766666677777777777777776542 34556666667666665554 2222 1235566666666666
Q ss_pred CCCCccccCCCCcCCCCCCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCcccCccchH-H
Q 038037 312 RSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELD-F 390 (798)
Q Consensus 312 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~ 390 (798)
++|.+.+..|..+..+++|++|+++.|.+...... .+..+++|++|++++|.+.+..... .
T Consensus 156 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~------------------~~~~l~~L~~L~L~~n~l~~~~~~~~~ 217 (549)
T 2z81_A 156 KALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEI------------------FADILSSVRYLELRDTNLARFQFSPLP 217 (549)
T ss_dssp EETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHH------------------HHHSTTTBSEEEEESCBCTTCCCCCCS
T ss_pred cCCcccccChhhhhccccCceEecccCcccccchh------------------hHhhcccccEEEccCCccccccccccc
Confidence 66666666666666666666666666655421111 2234556666666666555431000 0
Q ss_pred HhhcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCccc----cc
Q 038037 391 LLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWL----LD 466 (798)
Q Consensus 391 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~----~~ 466 (798)
....+++|+.|++++|.++.... ..++..+..+++|+.+++++|.+.+...... ..
T Consensus 218 ~~~~~~~L~~L~l~~n~l~~~~~--------------------~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~ 277 (549)
T 2z81_A 218 VDEVSSPMKKLAFRGSVLTDESF--------------------NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVV 277 (549)
T ss_dssp SCCCCCCCCEEEEESCEEEHHHH--------------------HHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCC
T ss_pred hhhhhhcccceeccccccchhHH--------------------HHHHHHhhhhccccccccccccccccccccccchhhh
Confidence 11223444444444443321110 0123344556677777777776654211000 00
Q ss_pred ccCcccceeeCCCCccccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeC
Q 038037 467 PSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSH 546 (798)
Q Consensus 467 ~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 546 (798)
..+.+++.+++.++.+...... ...+..+...++|++|++++
T Consensus 278 ~~l~~L~~L~l~~~~i~~~~~~--------------------------------------~~l~~~~~~~~~L~~L~l~~ 319 (549)
T 2z81_A 278 SELGKVETVTIRRLHIPQFYLF--------------------------------------YDLSTVYSLLEKVKRITVEN 319 (549)
T ss_dssp CCCTTCCEEEEESCBCSCGGGS--------------------------------------CCCCHHHHHSTTCCEEEEES
T ss_pred hhhcccccccccccccchhhhc--------------------------------------ccchhhhhhcccceEEEecc
Confidence 1233444444444433221100 01222334456788888888
Q ss_pred cccccccChhh-hccccccceeecCCCccccccc---cccccCCCccEEEcCCCcccccCC--ccccCCCCCcEEeCCCC
Q 038037 547 NSLSGLLPQCL-GNFSDELAVLDLQGNNFFGTIP---DTFIKESRLGVIDLSHNLFQGRIP--RSLVNCSKLEFLDLGNN 620 (798)
Q Consensus 547 n~i~~~~~~~~-~~~~~~L~~L~L~~n~i~~~~~---~~~~~l~~L~~L~Ls~N~i~~~~~--~~~~~l~~L~~L~L~~N 620 (798)
|.+. .+|..+ ..++ +|++|++++|++++..| ..+..+++|++|++++|++++..+ ..+..+++|++|++++|
T Consensus 320 n~l~-~ip~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N 397 (549)
T 2z81_A 320 SKVF-LVPCSFSQHLK-SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN 397 (549)
T ss_dssp SCCC-CCCHHHHHHCT-TCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTC
T ss_pred Cccc-cCCHHHHhcCc-cccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCC
Confidence 8887 455554 3555 68888888888877553 336778888888888888875532 45778888899999998
Q ss_pred cCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCChhhhhcchhchhccccccccccC
Q 038037 621 QISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQD 700 (798)
Q Consensus 621 ~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~ 700 (798)
+++ .+|..+..+++|++|++++|+++.+.. ...++|+.|++++|++++..+
T Consensus 398 ~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~-----~~~~~L~~L~Ls~N~l~~~~~----------------------- 448 (549)
T 2z81_A 398 TFH-PMPDSCQWPEKMRFLNLSSTGIRVVKT-----CIPQTLEVLDVSNNNLDSFSL----------------------- 448 (549)
T ss_dssp CCC-CCCSCCCCCTTCCEEECTTSCCSCCCT-----TSCTTCSEEECCSSCCSCCCC-----------------------
T ss_pred CCc-cCChhhcccccccEEECCCCCcccccc-----hhcCCceEEECCCCChhhhcc-----------------------
Confidence 887 567778888889999999988876532 123688899999998874210
Q ss_pred CCCCCCCccccchhccccceeeeccCcccccCCccCceeEEEcCCCcccccCchhhhcccCCCeEeCcCCccccCCCccc
Q 038037 701 VIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCL 780 (798)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 780 (798)
..+.|++|+|++|+|+.+ |. ...+++|++|+|++|++++.+|+.|
T Consensus 449 ---------------------------------~l~~L~~L~Ls~N~l~~i-p~-~~~l~~L~~L~Ls~N~l~~~~~~~~ 493 (549)
T 2z81_A 449 ---------------------------------FLPRLQELYISRNKLKTL-PD-ASLFPVLLVMKISRNQLKSVPDGIF 493 (549)
T ss_dssp ---------------------------------CCTTCCEEECCSSCCSSC-CC-GGGCTTCCEEECCSSCCCCCCTTGG
T ss_pred ---------------------------------cCChhcEEECCCCccCcC-CC-cccCccCCEEecCCCccCCcCHHHH
Confidence 035688899999998854 43 4678899999999999998888888
Q ss_pred cCCCCCCeEeCCCCcCCC
Q 038037 781 GNLTNLESLDLSNNRFFF 798 (798)
Q Consensus 781 ~~l~~L~~L~Ls~N~l~~ 798 (798)
..+++|+.|++++|+++|
T Consensus 494 ~~l~~L~~L~l~~N~~~~ 511 (549)
T 2z81_A 494 DRLTSLQKIWLHTNPWDC 511 (549)
T ss_dssp GGCTTCCEEECCSSCBCC
T ss_pred hcCcccCEEEecCCCccC
Confidence 889999999999998875
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.1e-45 Score=415.80 Aligned_cols=521 Identities=23% Similarity=0.273 Sum_probs=404.4
Q ss_pred CcEEEccCCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCCchHHHHhcCCCCCEEEccCCccCCCCchhccCCCC
Q 038037 96 LSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLANLSS 175 (798)
Q Consensus 96 L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 175 (798)
.++++.++..++ .+|..+. +++++|++++|.+.. ..+..+..+++|++|++++|.+.+..+.+|+++++
T Consensus 9 ~~~~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~--------~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~ 77 (570)
T 2z63_A 9 NITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRH--------LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH 77 (570)
T ss_dssp TTEEECCSSCCS-SCCSSSC--SSCCEEECCSCCCCE--------ECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTT
T ss_pred CcEEEeCCCCcc-ccCCCcc--ccccEEEccCCccCc--------cChhHhhCCCCceEEECCCCcCCccCcccccCchh
Confidence 355667776676 6776553 579999999998432 12336788999999999999999888889999999
Q ss_pred CCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCEEecCCCcCCC-cccccccCCCCCCEEECc
Q 038037 176 LSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSS-ELPTSIGNLSSLKKLDLS 254 (798)
Q Consensus 176 L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~ 254 (798)
|++|++++|.+++..+.+|.++++|++|++++|.+....+..++.+++|++|++++|.+++ ..|..+.++++|++|+++
T Consensus 78 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~ 157 (570)
T 2z63_A 78 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157 (570)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECT
T ss_pred CCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCc
Confidence 9999999999998888999999999999999999998776679999999999999999987 368999999999999999
Q ss_pred CCcCCCCCccccccCCCC----ceeecCCCCcceEecCCccccccCCccccCCCCCCEEEcCCCCcc-ccCCCCcCCCCC
Q 038037 255 QNRFFSELPTSIGNLGSL----KVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFW-GKVPHSIGNFTR 329 (798)
Q Consensus 255 ~n~i~~~~~~~~~~l~~L----~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~-~~~~~~~~~l~~ 329 (798)
+|.+....+..++.+++| ++|++++|.+..+ .+..+... +|+.|++++|... ...+..+..++.
T Consensus 158 ~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~----------~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~ 226 (570)
T 2z63_A 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI----------QPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAG 226 (570)
T ss_dssp TSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEE----------CTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTT
T ss_pred CCccceecHHHccchhccchhhhhcccCCCCceec----------CHHHhccC-cceeEecccccccccchhhhhcCccc
Confidence 999988888888888888 7777777776654 35555554 7999999998542 233455666777
Q ss_pred CcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCC--CCcEEeccCC-cccCccchHHHhhcCCCCCeEEcccc
Q 038037 330 LQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLT--QLIVLSLSQN-SYRGMIELDFLLTSLKNLEALVLSSN 406 (798)
Q Consensus 330 L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~--~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n 406 (798)
++...+....+... ..++.+.- ..+..++ .++.++++++ .+.+..+. .+..+++|+.|++++|
T Consensus 227 l~~~~l~~~~~~~~--------~~l~~~~~----~~~~~l~~l~l~~l~l~~~~~~~~~~~~--~~~~l~~L~~L~l~~~ 292 (570)
T 2z63_A 227 LEVHRLVLGEFRNE--------GNLEKFDK----SALEGLCNLTIEEFRLAYLDYYLDDIID--LFNCLTNVSSFSLVSV 292 (570)
T ss_dssp CEEEEEEEEECCCC--------SSCEECCT----TTTGGGGGSEEEEEEEEETTEEESCSTT--TTGGGTTCSEEEEESC
T ss_pred cceeeeccccccCc--------hhhhhcch----hhhccccccchhhhhhhcchhhhhhchh--hhcCcCcccEEEecCc
Confidence 77776654433211 11111110 0122222 3567777766 44433332 3577888999999998
Q ss_pred cccccccCCCCCCccCccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCcccccccCcccceeeCCCCcccccc
Q 038037 407 RLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFD 486 (798)
Q Consensus 407 ~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~ 486 (798)
.++.++.... .. +|++|++++|.++.+|. ..+++|+.|++++|.+.+..+. ..+++|++|++++|.++...
T Consensus 293 ~l~~l~~~~~--~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~~~~~~----~~~~~L~~L~l~~n~l~~~~ 363 (570)
T 2z63_A 293 TIERVKDFSY--NF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFSE----VDLPSLEFLDLSRNGLSFKG 363 (570)
T ss_dssp EECSCCBCCS--CC-CCSEEEEESCBCSSCCB--CBCSSCCEEEEESCBSCCBCCC----CBCTTCCEEECCSSCCBEEE
T ss_pred cchhhhhhhc--cC-CccEEeeccCcccccCc--ccccccCEEeCcCCcccccccc----ccCCCCCEEeCcCCccCccc
Confidence 8876654332 23 78888888888887776 4678888888888887765554 26777888888887776542
Q ss_pred CCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccC-hhhhccccccc
Q 038037 487 QHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLP-QCLGNFSDELA 565 (798)
Q Consensus 487 ~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~~~~~L~ 565 (798)
.... .....++++.+++++|.+.+..+. +..+++|++|++++|.+.+..+ ..+..++ +|+
T Consensus 364 ~~~~-----------------~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~ 424 (570)
T 2z63_A 364 CCSQ-----------------SDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLR-NLI 424 (570)
T ss_dssp EEEH-----------------HHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCT-TCC
T ss_pred cccc-----------------cccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCC-CCC
Confidence 1000 001235666777777777765555 8899999999999999997766 4677777 799
Q ss_pred eeecCCCccccccccccccCCCccEEEcCCCccc-ccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCc
Q 038037 566 VLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQ-GRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSN 644 (798)
Q Consensus 566 ~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N 644 (798)
+|++++|.+.+..|..|.++++|++|++++|.++ +.+|..|..+++|++|++++|++++..|..|..+++|+.|++++|
T Consensus 425 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 504 (570)
T 2z63_A 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504 (570)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC
Confidence 9999999999999999999999999999999998 578899999999999999999999998999999999999999999
Q ss_pred ccccccCCCCCcCCCCcccEEEccCCcCcCCCChhhhh
Q 038037 645 TFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFL 682 (798)
Q Consensus 645 ~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~ 682 (798)
+++++.+..+ ..+++|+.|++++|+++|.+|..++.
T Consensus 505 ~l~~~~~~~~--~~l~~L~~L~l~~N~~~~~~~~~~~~ 540 (570)
T 2z63_A 505 QLKSVPDGIF--DRLTSLQKIWLHTNPWDCSCPRIDYL 540 (570)
T ss_dssp CCSCCCTTTT--TTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred cCCCCCHHHh--hcccCCcEEEecCCcccCCCcchHHH
Confidence 9999866544 78999999999999999999976554
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.5e-46 Score=429.25 Aligned_cols=361 Identities=18% Similarity=0.257 Sum_probs=267.6
Q ss_pred CCCCCCCCCCCCCCcee---eeeEecCCCCeEEEEEcCCCCccCcccCcccccccCCCCeEEcCCCCCCCC---------
Q 038037 17 KAASWKPEEGDVDCCSW---DGVHCDKNTGHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSS--------- 84 (798)
Q Consensus 17 ~~~~w~~~~~~~~~~~w---~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~--------- 84 (798)
..++|.. ..+||.| .||.|+.. ++|+.|+|+++.+.+.++. .+.++++|++|+|++|.+...
T Consensus 56 ~~~~W~~---~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~--~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~ 129 (636)
T 4eco_A 56 PGANWNF---NKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPD--AIGQLTELEVLALGSHGEKVNERLFGPKGI 129 (636)
T ss_dssp --CCCCC---SSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECG--GGGGCTTCCEEESCCGGGGGTCCSBSTTSB
T ss_pred cCCCCCC---CCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCCh--HHhcCccceEEECcCCccccCCcccccccc
Confidence 4568987 6799999 99999765 7999999999999988886 999999999999999965210
Q ss_pred --CCchhccCCCCCcEEEccCCCCCCCCchhhhcC-CCCcEEEccCCCCC------CCcccc-----CCCchHHHHhcCC
Q 038037 85 --EIPPEIINLLRLSYLNLSGASLSGQIPSEILEF-SNLVSLDLSLNDGP------GGRLEL-----QKPNLANLVEKLS 150 (798)
Q Consensus 85 --~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~------~~~~~~-----~~~~l~~~~~~l~ 150 (798)
.+|... +..|+ ++++++.+.+..|..+..+ ..+..+++....+. ...+.+ ....+|..+.+++
T Consensus 130 ~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~ 206 (636)
T 4eco_A 130 SANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLT 206 (636)
T ss_dssp CTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCT
T ss_pred ccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhccc
Confidence 133322 44566 7777776666655554421 11111111110000 000000 0123677788899
Q ss_pred CCCEEEccCCccCCC-----------------Cchhcc--CCCCCCEEeccccccCccCcccccCCCCCcEEEccCCC-C
Q 038037 151 NLETLDLGDASIRST-----------------IPHNLA--NLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNE-L 210 (798)
Q Consensus 151 ~L~~L~l~~~~~~~~-----------------~~~~~~--~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~-i 210 (798)
+|++|++++|.+++. +|..++ ++++|++|++++|.+.+..|..|+++++|++|++++|+ +
T Consensus 207 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l 286 (636)
T 4eco_A 207 KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI 286 (636)
T ss_dssp TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTS
T ss_pred CCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCC
Confidence 999999999988874 788888 89999999999999888888889999999999999998 8
Q ss_pred CC-ccchhccCC------CCCCEEecCCCcCCCcccc--cccCCCCCCEEECcCCcCCCCCccccccCCCCceeecCCCC
Q 038037 211 RG-ELLVSIGNL------HSLKELDLSANILSSELPT--SIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNG 281 (798)
Q Consensus 211 ~~-~~~~~~~~l------~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~ 281 (798)
++ ..|..+..+ ++|++|++++|.++ .+|. .+..+++|++|++++|.+.+.+| .+..+++|++|++++|+
T Consensus 287 ~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~ 364 (636)
T 4eco_A 287 SGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQ 364 (636)
T ss_dssp CHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSE
T ss_pred ccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCc
Confidence 87 677777765 89999999999998 6777 88999999999999999976777 78888899888888877
Q ss_pred cceEecCCccccccCCccccCCCC-CCEEEcCCCCccccCCCCcCCCC--CCcEEeccCccCcCCcchhcccccCCcccc
Q 038037 282 LFELHLSFNKFSGEFPWSTRNFSS-LKILDLRSCSFWGKVPHSIGNFT--RLQLLYLTFNNFSGDLLGSIGNLRSLKALH 358 (798)
Q Consensus 282 l~~l~l~~~~~~~~~~~~~~~l~~-L~~L~L~~n~~~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ 358 (798)
+.. +|..+..+++ |++|++++|.+. .+|..+..++ +|++|++++|.+.+..|..+....
T Consensus 365 l~~-----------lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~------ 426 (636)
T 4eco_A 365 ITE-----------IPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD------ 426 (636)
T ss_dssp EEE-----------CCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTC------
T ss_pred ccc-----------ccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccc------
Confidence 653 3667888888 999999999987 6777777654 899999999999876665332100
Q ss_pred cCCCChhhhcCCCCcEEeccCCcccCccchHHHhhcCCCCCeEEccccccccccc
Q 038037 359 VGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTK 413 (798)
Q Consensus 359 l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~ 413 (798)
.....+++|+.|++++|.+..++.. .+..+++|+.|++++|+++.++.
T Consensus 427 -----~~~~~~~~L~~L~Ls~N~l~~lp~~--~~~~l~~L~~L~Ls~N~l~~i~~ 474 (636)
T 4eco_A 427 -----PTPFKGINVSSINLSNNQISKFPKE--LFSTGSPLSSINLMGNMLTEIPK 474 (636)
T ss_dssp -----SSCCCCCCEEEEECCSSCCCSCCTH--HHHTTCCCSEEECCSSCCSBCCS
T ss_pred -----cccccCCCCCEEECcCCccCcCCHH--HHccCCCCCEEECCCCCCCCcCH
Confidence 0111567899999999998876553 35678888888888888775553
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=8.7e-45 Score=419.88 Aligned_cols=499 Identities=18% Similarity=0.269 Sum_probs=301.7
Q ss_pred CCCCCC----CCCCCcee------------eeeEecCCCCeEEEEEcCCCCccCcccCcccccccCCCCeEEc-CCCCCC
Q 038037 20 SWKPEE----GDVDCCSW------------DGVHCDKNTGHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNL-AFNDFN 82 (798)
Q Consensus 20 ~w~~~~----~~~~~~~w------------~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~L-~~~~~~ 82 (798)
+|.... ..+++|.| .||.|+. .++|+.|+|+++.+.+.++. .+..+++|++|+| ++|.+.
T Consensus 285 ~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G~ip~--~l~~L~~L~~LdLss~N~ls 361 (876)
T 4ecn_A 285 NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKGRVPD--AIGQLTELKVLSFGTHSETV 361 (876)
T ss_dssp GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEEEECG--GGGGCTTCCEEESCCTTHHH
T ss_pred CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCCcCch--HHhccccceEeeeccccccc
Confidence 786632 12334999 9999986 47999999999999998886 9999999999999 777554
Q ss_pred CCCCchhccCCCCCc-----EE---------Ec-cCCCCCCCCchhhh-----------cCCCCcEEEccC--CCCCCCc
Q 038037 83 SSEIPPEIINLLRLS-----YL---------NL-SGASLSGQIPSEIL-----------EFSNLVSLDLSL--NDGPGGR 134 (798)
Q Consensus 83 ~~~l~~~~~~l~~L~-----~L---------~L-s~~~~~~~~~~~~~-----------~l~~L~~L~l~~--~~~~~~~ 134 (798)
.............+. .+ +. ....+.+..+..+. ....++.+.+.. |.
T Consensus 362 G~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~----- 436 (876)
T 4ecn_A 362 SGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNR----- 436 (876)
T ss_dssp HTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCE-----
T ss_pred ccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCc-----
Confidence 321100000000000 00 00 00000000000010 111122222211 11
Q ss_pred cccCCCchHHHHhcCCCCCEEEccCCccCC-----------------CCchhcc--CCCCCCEEeccccccCccCccccc
Q 038037 135 LELQKPNLANLVEKLSNLETLDLGDASIRS-----------------TIPHNLA--NLSSLSFVSLRNCELEGRILSSFG 195 (798)
Q Consensus 135 ~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~-----------------~~~~~~~--~l~~L~~L~l~~~~l~~~~~~~~~ 195 (798)
+ ..+|..+.++++|++|++++|.+++ .+|..++ ++++|++|++++|.+.+..|..|.
T Consensus 437 L----~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~ 512 (876)
T 4ecn_A 437 I----TFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY 512 (876)
T ss_dssp E----EEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG
T ss_pred c----cchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHh
Confidence 1 1255566666667777776666665 2666766 888888888888888777888888
Q ss_pred CCCCCcEEEccCCC-CCC-ccchhccCC-------CCCCEEecCCCcCCCcccc--cccCCCCCCEEECcCCcCCCCCcc
Q 038037 196 NLSKLLHLDLSLNE-LRG-ELLVSIGNL-------HSLKELDLSANILSSELPT--SIGNLSSLKKLDLSQNRFFSELPT 264 (798)
Q Consensus 196 ~l~~L~~L~Ls~n~-i~~-~~~~~~~~l-------~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~i~~~~~~ 264 (798)
++++|++|++++|+ +++ ..|..+..+ ++|++|++++|.++ .+|. .+.++++|++|++++|.+. .+|
T Consensus 513 ~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp- 589 (876)
T 4ecn_A 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE- 589 (876)
T ss_dssp GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-
T ss_pred CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-
Confidence 88888888888887 776 566655544 48899999988888 6777 7888889999999998886 666
Q ss_pred ccccCCCCceeecCCCCcceEecCCccccccCCccccCCCC-CCEEEcCCCCccccCCCCcCCCCC--CcEEeccCccCc
Q 038037 265 SIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSS-LKILDLRSCSFWGKVPHSIGNFTR--LQLLYLTFNNFS 341 (798)
Q Consensus 265 ~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~-L~~L~L~~n~~~~~~~~~~~~l~~--L~~L~l~~n~l~ 341 (798)
.|..+++|++|++++|++.. +|..+..+++ |+.|++++|.+. .+|..+..++. |+.|++++|.+.
T Consensus 590 ~~~~L~~L~~L~Ls~N~l~~-----------lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~ 657 (876)
T 4ecn_A 590 AFGTNVKLTDLKLDYNQIEE-----------IPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIG 657 (876)
T ss_dssp CCCTTSEESEEECCSSCCSC-----------CCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTT
T ss_pred hhcCCCcceEEECcCCcccc-----------chHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCC
Confidence 78888888777777776643 3666777888 999999999886 67777776654 999999999888
Q ss_pred CCcchhcccccCCcccccCCCChhhh--cCCCCcEEeccCCcccCccchHHHhhcCCCCCeEEcccccccccccCCCCCC
Q 038037 342 GDLLGSIGNLRSLKALHVGQIPSSLR--NLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTT 419 (798)
Q Consensus 342 ~~~~~~~~~l~~L~~l~l~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~ 419 (798)
+..+.. +..+. .+++|+.|++++|.+..++.. .+..+++|+.|++++|+++.++.......
T Consensus 658 g~ip~l---------------~~~l~~~~~~~L~~L~Ls~N~L~~lp~~--~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~ 720 (876)
T 4ecn_A 658 SEGRNI---------------SCSMDDYKGINASTVTLSYNEIQKFPTE--LFATGSPISTIILSNNLMTSIPENSLKPK 720 (876)
T ss_dssp TTSSSC---------------SSCTTTCCCCCEEEEECCSSCCCSCCHH--HHHTTCCCSEEECCSCCCSCCCTTSSSCT
T ss_pred Cccccc---------------hhhhccccCCCcCEEEccCCcCCccCHH--HHccCCCCCEEECCCCcCCccChHHhccc
Confidence 654321 11222 345889999999998866543 34678888899988887775554322110
Q ss_pred ccCccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCcccccccCcccceeeCCCCccccccCCCCCCCCcEEec
Q 038037 420 SQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDF 499 (798)
Q Consensus 420 ~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l 499 (798)
+....++++|+.|++++|.++ .+|..+....+++|+.|++++|+++.
T Consensus 721 -----------------~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~--------------- 767 (876)
T 4ecn_A 721 -----------------DGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS--------------- 767 (876)
T ss_dssp -----------------TSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS---------------
T ss_pred -----------------cccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc---------------
Confidence 001123346666666666665 33332221123333333333333221
Q ss_pred cCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccc
Q 038037 500 SSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIP 579 (798)
Q Consensus 500 ~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~ 579 (798)
+|..+..+++|++|+|++|+ ++++|++.+..|
T Consensus 768 -----------------------------lp~~l~~L~~L~~L~Ls~N~-------------------~ls~N~l~~~ip 799 (876)
T 4ecn_A 768 -----------------------------FPTQPLNSSQLKAFGIRHQR-------------------DAEGNRILRQWP 799 (876)
T ss_dssp -----------------------------CCCGGGGCTTCCEEECCCCB-------------------CTTCCBCCCCCC
T ss_pred -----------------------------cchhhhcCCCCCEEECCCCC-------------------CcccccccccCh
Confidence 12233344555555555544 334455555555
Q ss_pred cccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCccc
Q 038037 580 DTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTF 646 (798)
Q Consensus 580 ~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l 646 (798)
..|..+++|+.|+|++|++. .+|..+. ++|+.|+|++|++..+.+..|.....+..+.|.+|+.
T Consensus 800 ~~l~~L~~L~~L~Ls~N~L~-~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~ 863 (876)
T 4ecn_A 800 TGITTCPSLIQLQIGSNDIR-KVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT 863 (876)
T ss_dssp TTGGGCSSCCEEECCSSCCC-BCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTT
T ss_pred HHHhcCCCCCEEECCCCCCC-ccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCc
Confidence 55656666666666666663 4444433 4566666666665544444443333334444444443
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.6e-44 Score=408.70 Aligned_cols=484 Identities=19% Similarity=0.222 Sum_probs=301.2
Q ss_pred CCCcEEEccCCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCCchHHHHhcCCCCCEEEccCCccCCCCchhccCC
Q 038037 94 LRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLANL 173 (798)
Q Consensus 94 ~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l 173 (798)
++|++|++++|.+++..|.++.++++|++|++++|.+.. ..+..+..+++|++|++++|.+.+..+..|+.+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~--------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 97 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT--------IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPL 97 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE--------ECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCc--------cChhhccccccCCEEECCCCccCccCHHHhccC
Confidence 344555555555444444444555555555555544211 111233444555555555555666666668888
Q ss_pred CCCCEEeccccccCcc-CcccccCCCCCcEEEccCCC-CCCccchhccCCCCCCEEecCCCcCCCcccccccCCCCCCEE
Q 038037 174 SSLSFVSLRNCELEGR-ILSSFGNLSKLLHLDLSLNE-LRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKL 251 (798)
Q Consensus 174 ~~L~~L~l~~~~l~~~-~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 251 (798)
++|++|++++|.+++. .+..|.++++|++|++++|. +....+..+..+++|++|++++|.+++..|..+..+++|++|
T Consensus 98 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 177 (549)
T 2z81_A 98 SSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL 177 (549)
T ss_dssp TTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEE
T ss_pred CCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceE
Confidence 8888888888887753 34567788888888888887 343334567777788888888887777777777777777777
Q ss_pred ECcCCcCCCCCccccccCCCCceeecCCCCcceEecCCccccccCCccccCCCCCCEEEcCCCCccccCCCCcCCCCCCc
Q 038037 252 DLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQ 331 (798)
Q Consensus 252 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 331 (798)
++++|.+.......+..+++|++|++++|++..+... + ......+++|+
T Consensus 178 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------~-----------------------~~~~~~~~~L~ 226 (549)
T 2z81_A 178 TLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFS--------P-----------------------LPVDEVSSPMK 226 (549)
T ss_dssp EEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCC--------C-----------------------CSSCCCCCCCC
T ss_pred ecccCcccccchhhHhhcccccEEEccCCcccccccc--------c-----------------------cchhhhhhccc
Confidence 7777776433222334566676666666655432110 0 01112234444
Q ss_pred EEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCcccCccchH----HHhhcCCCCCeEEccccc
Q 038037 332 LLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELD----FLLTSLKNLEALVLSSNR 407 (798)
Q Consensus 332 ~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~~~l~~L~~L~l~~n~ 407 (798)
.|++++|.+.+..+..+.. .+..+++|+.+++++|.+.+..... ..+..+++++.+++.++.
T Consensus 227 ~L~l~~n~l~~~~~~~l~~--------------~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 292 (549)
T 2z81_A 227 KLAFRGSVLTDESFNELLK--------------LLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLH 292 (549)
T ss_dssp EEEEESCEEEHHHHHHHHG--------------GGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCB
T ss_pred ceeccccccchhHHHHHHH--------------Hhhhhccccccccccccccccccccccchhhhhhhcccccccccccc
Confidence 4555444444332221111 2333444555555555443321100 012345556666666554
Q ss_pred ccccccCCC----CCCccCccEEeeCCCCCCCcchhh-hCCCCccEEECCCCcccCCCCccc-ccccCcccceeeCCCCc
Q 038037 408 LSLLTKATS----NTTSQKFRYVGLRSCNLTEFPNFL-KNQHHLVILDLSANRIHGKIPKWL-LDPSMQYLNALNLSHNL 481 (798)
Q Consensus 408 i~~~~~~~~----~~~~~~L~~L~l~~~~l~~l~~~~-~~~~~L~~L~ls~n~i~~~~~~~~-~~~~l~~L~~L~ls~n~ 481 (798)
+........ .....+++.+++++|.++.+|..+ ..+++|++|++++|.+.+..|... ....+++|++|++++|+
T Consensus 293 i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~ 372 (549)
T 2z81_A 293 IPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH 372 (549)
T ss_dssp CSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC
T ss_pred cchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCc
Confidence 433221110 012356788888888888888765 468888888888888876543221 11156677777777776
Q ss_pred cccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccc
Q 038037 482 LTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFS 561 (798)
Q Consensus 482 l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~ 561 (798)
++.++. .+..+..+++|++|++++|+++ .+|..+..++
T Consensus 373 l~~~~~-----------------------------------------~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~ 410 (549)
T 2z81_A 373 LRSMQK-----------------------------------------TGEILLTLKNLTSLDISRNTFH-PMPDSCQWPE 410 (549)
T ss_dssp CCCHHH-----------------------------------------HHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCT
T ss_pred cccccc-----------------------------------------chhhhhcCCCCCEEECCCCCCc-cCChhhcccc
Confidence 654321 1134677889999999999988 5666676666
Q ss_pred cccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEc
Q 038037 562 DELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLIL 641 (798)
Q Consensus 562 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 641 (798)
+|++|++++|+++++. ..+ .++|++|++++|++++.. ..+++|++|+|++|+++. +|. ...+++|+.|+|
T Consensus 411 -~L~~L~Ls~N~l~~l~-~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~~-ip~-~~~l~~L~~L~L 480 (549)
T 2z81_A 411 -KMRFLNLSSTGIRVVK-TCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLKT-LPD-ASLFPVLLVMKI 480 (549)
T ss_dssp -TCCEEECTTSCCSCCC-TTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSS-CCC-GGGCTTCCEEEC
T ss_pred -cccEEECCCCCccccc-chh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccCc-CCC-cccCccCCEEec
Confidence 7999999999987543 322 268999999999998643 478899999999999984 454 467899999999
Q ss_pred cCcccccccCCCCCcCCCCcccEEEccCCcCcCCCCh-hhhhcc
Q 038037 642 RSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPS-KSFLCW 684 (798)
Q Consensus 642 ~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~-~~~~~~ 684 (798)
++|+++++.+..+ ..+++|+.|++++|++.|.+|. .++..|
T Consensus 481 s~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~~~~~~~~~l~~~ 522 (549)
T 2z81_A 481 SRNQLKSVPDGIF--DRLTSLQKIWLHTNPWDCSCPRIDYLSRW 522 (549)
T ss_dssp CSSCCCCCCTTGG--GGCTTCCEEECCSSCBCCCHHHHHHHHHH
T ss_pred CCCccCCcCHHHH--hcCcccCEEEecCCCccCCCccHHHHHHH
Confidence 9999998866543 6789999999999999998884 444333
No 17
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.5e-42 Score=400.62 Aligned_cols=514 Identities=22% Similarity=0.225 Sum_probs=319.1
Q ss_pred CCCEEEccCCccCCCCchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCEEecC
Q 038037 151 NLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLS 230 (798)
Q Consensus 151 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 230 (798)
++++|++++|.|++..+.+|.++++|++|+|++|.++++.+.+|.++++|++|+|++|++++..+..|.++++|++|+++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 56666666666665555566666666666666666666556666666666666666666665555556666666666666
Q ss_pred CCcCCCcccccccCCCCCCEEECcCCcCCCC-CccccccCCCCceeecCCCCcceEecCCccccccCCccccCCC----C
Q 038037 231 ANILSSELPTSIGNLSSLKKLDLSQNRFFSE-LPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFS----S 305 (798)
Q Consensus 231 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~----~ 305 (798)
+|.+++..+..|+++++|++|++++|.+... .|..++.+++|++|++++|+++.+. +..+..+. .
T Consensus 133 ~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~----------~~~l~~L~~l~~~ 202 (635)
T 4g8a_A 133 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY----------CTDLRVLHQMPLL 202 (635)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC----------GGGGHHHHTCTTC
T ss_pred CCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccc----------cccccchhhhhhh
Confidence 6666655555566666666666666665442 3455556666666655555554442 22222221 1
Q ss_pred CCEEEcCCCCccccCCCCcCCCCCCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCcccCc
Q 038037 306 LKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGM 385 (798)
Q Consensus 306 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~~ 385 (798)
...++++.|.+....+..+. ...++.+++.+|........ ..+..+..++...+..+.....
T Consensus 203 ~~~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~~~~~~~~-----------------~~~~~l~~l~~~~l~~~~~~~~ 264 (635)
T 4g8a_A 203 NLSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMK-----------------TCIQGLAGLEVHRLVLGEFRNE 264 (635)
T ss_dssp CCEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSSHHHHH-----------------HHHHTTTTCEEEEEEEECCTTS
T ss_pred hhhhhcccCcccccCccccc-chhhhhhhhhcccccccccc-----------------hhhcCCcccccccccccccccc
Confidence 23455555555433333222 22334444444432211111 0233333333332221111100
Q ss_pred cchHHHhhcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCC----CcchhhhCCCCccEEECCCCcccCCCC
Q 038037 386 IELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLT----EFPNFLKNQHHLVILDLSANRIHGKIP 461 (798)
Q Consensus 386 ~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~----~l~~~~~~~~~L~~L~ls~n~i~~~~~ 461 (798)
. .+ .... .........+....+..+... .++..+.....++.+++.++
T Consensus 265 ~----------~l----------~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~------- 316 (635)
T 4g8a_A 265 G----------NL----------EKFD-KSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSV------- 316 (635)
T ss_dssp C----------CC----------SCCC-TTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESC-------
T ss_pred c----------cc----------cccc-ccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccc-------
Confidence 0 00 0000 000001111222222111111 11122233344444444444
Q ss_pred cccccccCcccceeeCCCCccccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCE
Q 038037 462 KWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKN 541 (798)
Q Consensus 462 ~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~ 541 (798)
.+..+........++.+++.+|.+..........++.+.+..|.+.... ....+++|++
T Consensus 317 -------------------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~ 375 (635)
T 4g8a_A 317 -------------------TIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF--SEVDLPSLEF 375 (635)
T ss_dssp -------------------EEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBC--CCCBCTTCCE
T ss_pred -------------------ccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCc--cccccccccc
Confidence 4444433333444555555555555555555566677777777665432 3456889999
Q ss_pred EEeeCccccc--ccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCC-ccccCCCCCcEEeCC
Q 038037 542 LVLSHNSLSG--LLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIP-RSLVNCSKLEFLDLG 618 (798)
Q Consensus 542 L~Ls~n~i~~--~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~-~~~~~l~~L~~L~L~ 618 (798)
|++++|.+.. ..+..+.... +|+.+++..|.+.. .+..|..+++|+.+++++|......+ ..|..+++++.++++
T Consensus 376 L~ls~n~l~~~~~~~~~~~~~~-~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls 453 (635)
T 4g8a_A 376 LDLSRNGLSFKGCCSQSDFGTI-SLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 453 (635)
T ss_dssp EECCSSCCBEEEECCHHHHSCS-CCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECT
T ss_pred chhhccccccccccccchhhhh-hhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccccccccccccc
Confidence 9999998864 3455555665 79999999999875 45578889999999999988775544 568899999999999
Q ss_pred CCcCCccCCcccCCCCCCCEEEccCcccc-cccCCCCCcCCCCcccEEEccCCcCcCCCChhhhhcchhchhcccccccc
Q 038037 619 NNQISDTFPSWLGTLPNLNVLILRSNTFY-GIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRY 697 (798)
Q Consensus 619 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~~~~~ 697 (798)
+|++....+..+..+++|+.|++++|.+. .+.+.. +..+++|+.|++++|++++..|.. |.+
T Consensus 454 ~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~--~~~l~~L~~L~Ls~N~L~~l~~~~-f~~-------------- 516 (635)
T 4g8a_A 454 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI--FTELRNLTFLDLSQCQLEQLSPTA-FNS-------------- 516 (635)
T ss_dssp TSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC--CTTCTTCCEEECTTSCCCEECTTT-TTT--------------
T ss_pred ccccccccccccccchhhhhhhhhhcccccccCchh--hhhccccCEEECCCCccCCcChHH-HcC--------------
Confidence 99999999999999999999999999854 444443 478899999999999998544432 211
Q ss_pred ccCCCCCCCCccccchhccccceeeeccCcccccCCccCceeEEEcCCCcccccCchhhhcccCCCeEeCcCCccccCCC
Q 038037 698 LQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIP 777 (798)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 777 (798)
.++|++|+|++|+|+++.|..|.++++|++|||++|+|+++.|
T Consensus 517 -------------------------------------l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~ 559 (635)
T 4g8a_A 517 -------------------------------------LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 559 (635)
T ss_dssp -------------------------------------CTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCS
T ss_pred -------------------------------------CCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCH
Confidence 4679999999999999999999999999999999999999999
Q ss_pred ccccCC-CCCCeEeCCCCcCC
Q 038037 778 SCLGNL-TNLESLDLSNNRFF 797 (798)
Q Consensus 778 ~~~~~l-~~L~~L~Ls~N~l~ 797 (798)
+.|..+ ++|+.|+|++|+|+
T Consensus 560 ~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 560 QELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp SCTTCCCTTCCEEECTTCCBC
T ss_pred HHHHhhhCcCCEEEeeCCCCc
Confidence 999988 68999999999986
No 18
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=4.5e-42 Score=396.63 Aligned_cols=522 Identities=23% Similarity=0.202 Sum_probs=351.5
Q ss_pred CCcEEEccCCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCCch-HHHHhcCCCCCEEEccCCccCCCCchhccCC
Q 038037 95 RLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNL-ANLVEKLSNLETLDLGDASIRSTIPHNLANL 173 (798)
Q Consensus 95 ~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l 173 (798)
++++|+|++|.+++..+.+|.++++|++|++++|.+. .+ +..|..+++|++|++++|++++..+.+|.++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~---------~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L 123 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ---------TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 123 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC---------EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTC
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC---------CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCC
Confidence 5666666666666444455666666666666666521 11 1234555566666666666666666677888
Q ss_pred CCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCc-cchhccCCCCCCEEecCCCcCCCcccccccCCCC----C
Q 038037 174 SSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGE-LLVSIGNLHSLKELDLSANILSSELPTSIGNLSS----L 248 (798)
Q Consensus 174 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~----L 248 (798)
++|++|++++|.++++.+..|+++++|++|++++|.+... .+..+..+++|++|++++|++++..+..+..+.+ .
T Consensus 124 ~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~ 203 (635)
T 4g8a_A 124 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 203 (635)
T ss_dssp TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCC
T ss_pred CCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhh
Confidence 8888888888888877777788888888888888887653 4566777788888888888877766666654433 3
Q ss_pred CEEECcCCcCCCCCccccccCCCCceeecCCCCcceEecCCccccccCCccccCCCCCCEEEcCCCCc------cccCCC
Q 038037 249 KKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSF------WGKVPH 322 (798)
Q Consensus 249 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~------~~~~~~ 322 (798)
..++++.|.+....+..+. ...++.+++.+|... + ...+..+..+..++...+..+.. ......
T Consensus 204 ~~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~~~-~--------~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~ 273 (635)
T 4g8a_A 204 LSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDS-L--------NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS 273 (635)
T ss_dssp CEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSS-H--------HHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTT
T ss_pred hhhhcccCcccccCccccc-chhhhhhhhhccccc-c--------cccchhhcCCccccccccccccccccccccccccc
Confidence 4677777777544443332 233444444443211 0 01122334455555544432221 111222
Q ss_pred CcCCCCCCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCcccCccchHHHhhcCCCCCeEE
Q 038037 323 SIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALV 402 (798)
Q Consensus 323 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ 402 (798)
.+..+..+....+..+...... ...+..+..+..++.+.+.++.+..... +.....++.|+
T Consensus 274 ~~~~~~~l~~~~l~~~~~~~~~---------------~~~~~~~~~~~~l~~l~~~~~~~~~~~~----~~~~~~L~~L~ 334 (635)
T 4g8a_A 274 ALEGLCNLTIEEFRLAYLDYYL---------------DGIIDLFNCLTNVSSFSLVSVTIERVKD----FSYNFGWQHLE 334 (635)
T ss_dssp TTGGGGGSEEEEEEEECCCSCE---------------EECTTTTGGGTTCSEEEEESCEEEECGG----GGSCCCCSEEE
T ss_pred ccccccchhhhhhhhhhhcccc---------------cchhhhhhhhcccccccccccccccccc----cccchhhhhhh
Confidence 3333444444444433222111 1122245666778888888887765543 35567788888
Q ss_pred cccccccccccCCCCCCccCccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCC--CCcccccccCcccceeeCCCC
Q 038037 403 LSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGK--IPKWLLDPSMQYLNALNLSHN 480 (798)
Q Consensus 403 l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~--~~~~~~~~~l~~L~~L~ls~n 480 (798)
+.+|.+..+... ....++.+.+..+.+...+. ...+++|+.+++++|.+... .+.... .+.+++.+++..+
T Consensus 335 l~~~~~~~~~~~----~l~~L~~l~l~~n~~~~~~~-~~~l~~L~~L~ls~n~l~~~~~~~~~~~--~~~~L~~L~~~~~ 407 (635)
T 4g8a_A 335 LVNCKFGQFPTL----KLKSLKRLTFTSNKGGNAFS-EVDLPSLEFLDLSRNGLSFKGCCSQSDF--GTISLKYLDLSFN 407 (635)
T ss_dssp EESCEESSCCCC----BCTTCCEEEEESCCSCCBCC-CCBCTTCCEEECCSSCCBEEEECCHHHH--SCSCCCEEECCSC
T ss_pred cccccccCcCcc----cchhhhhcccccccCCCCcc-cccccccccchhhccccccccccccchh--hhhhhhhhhcccc
Confidence 888876655432 34667778887777665543 34577888888888876532 222222 5667777777777
Q ss_pred ccccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecccC-ccccCCCCCCEEEeeCcccccccChhhhc
Q 038037 481 LLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIP-SWICNLNTLKNLVLSHNSLSGLLPQCLGN 559 (798)
Q Consensus 481 ~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~ 559 (798)
.+....... ...+.++.+++..++.....+ ..|..+++++.+++++|.+.+..+..+..
T Consensus 408 ~~~~~~~~~--------------------~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~ 467 (635)
T 4g8a_A 408 GVITMSSNF--------------------LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 467 (635)
T ss_dssp SEEEECSCC--------------------TTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTT
T ss_pred ccccccccc--------------------cccccccchhhhhcccccccccccccccccccccccccccccccccccccc
Confidence 655443221 123455555555555554433 46788999999999999999888888888
Q ss_pred cccccceeecCCCcc-ccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCE
Q 038037 560 FSDELAVLDLQGNNF-FGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNV 638 (798)
Q Consensus 560 ~~~~L~~L~L~~n~i-~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~ 638 (798)
++ .|++|++++|.+ .+..|+.|..+++|++|+|++|+++++.|..|.++++|++|+|++|+|+++.|..|+.+++|++
T Consensus 468 ~~-~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~ 546 (635)
T 4g8a_A 468 LS-SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 546 (635)
T ss_dssp CT-TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCE
T ss_pred ch-hhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCE
Confidence 77 799999999985 4467889999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCcccccccCCCCCcCCC-CcccEEEccCCcCcCCCChhhhhcc
Q 038037 639 LILRSNTFYGIIKEPRTDCGF-SKLHIIDLSNNRFTGKLPSKSFLCW 684 (798)
Q Consensus 639 L~L~~N~l~~~~~~~~~~~~~-~~L~~L~ls~N~l~~~~p~~~~~~~ 684 (798)
|+|++|+++++.+..+ ..+ ++|+.|++++|++.|.+...+|..|
T Consensus 547 L~Ls~N~l~~~~~~~l--~~l~~~L~~L~L~~Np~~C~C~~~~~~~w 591 (635)
T 4g8a_A 547 LDYSLNHIMTSKKQEL--QHFPSSLAFLNLTQNDFACTCEHQSFLQW 591 (635)
T ss_dssp EECTTSCCCBCCSSCT--TCCCTTCCEEECTTCCBCCSGGGHHHHHH
T ss_pred EECCCCcCCCCCHHHH--HhhhCcCCEEEeeCCCCcccCCcHHHHHH
Confidence 9999999999977655 455 6899999999999999988887765
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=8.5e-43 Score=391.38 Aligned_cols=224 Identities=21% Similarity=0.232 Sum_probs=180.5
Q ss_pred cceEEEeecceeecccCccc-----cCCCCCCEEEeeCcccccccC-hhhhccc--cccceeecCCCccccccccccccC
Q 038037 514 ETILYLVSNNSLTGEIPSWI-----CNLNTLKNLVLSHNSLSGLLP-QCLGNFS--DELAVLDLQGNNFFGTIPDTFIKE 585 (798)
Q Consensus 514 ~l~~l~l~~n~l~~~~~~~~-----~~l~~L~~L~Ls~n~i~~~~~-~~~~~~~--~~L~~L~L~~n~i~~~~~~~~~~l 585 (798)
.++.+++++|++++.+|..+ ..++.|+.+++++|.+ .+| ..+..+. .+|+.|++++|.+.... .+..+
T Consensus 248 ~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l 323 (520)
T 2z7x_B 248 TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKI 323 (520)
T ss_dssp SCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSC
T ss_pred cccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhC
Confidence 44555556666666666666 7889999999999998 344 4444441 15999999999987542 23688
Q ss_pred CCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCc--cCCcccCCCCCCCEEEccCccccc-ccCCCCCcCCCCcc
Q 038037 586 SRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISD--TFPSWLGTLPNLNVLILRSNTFYG-IIKEPRTDCGFSKL 662 (798)
Q Consensus 586 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~--~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~~~~~~L 662 (798)
++|++|++++|++++..|..+..+++|++|++++|++++ ..|..|..+++|++|++++|.+.+ +... .+..+++|
T Consensus 324 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~--~~~~l~~L 401 (520)
T 2z7x_B 324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG--DCSWTKSL 401 (520)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC--SCCCCTTC
T ss_pred CcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccc--hhccCccC
Confidence 999999999999998889999999999999999999986 445779999999999999999998 5433 23678999
Q ss_pred cEEEccCCcCcCCCChhhhhcchhchhccccccccccCCCCCCCCccccchhccccceeeeccCcccccCCccCceeEEE
Q 038037 663 HIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGII 742 (798)
Q Consensus 663 ~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 742 (798)
+.|++++|++++..|.. +++.|+.|+
T Consensus 402 ~~L~Ls~N~l~~~~~~~------------------------------------------------------l~~~L~~L~ 427 (520)
T 2z7x_B 402 LSLNMSSNILTDTIFRC------------------------------------------------------LPPRIKVLD 427 (520)
T ss_dssp CEEECCSSCCCGGGGGS------------------------------------------------------CCTTCCEEE
T ss_pred CEEECcCCCCCcchhhh------------------------------------------------------hcccCCEEE
Confidence 99999999997543321 135789999
Q ss_pred cCCCcccccCchhhhcccCCCeEeCcCCccccCCCccccCCCCCCeEeCCCCcCCC
Q 038037 743 LSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFFF 798 (798)
Q Consensus 743 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 798 (798)
+++|+|+ .+|..+..+++|++|+|++|+++.+++..|..+++|+.|++++|++++
T Consensus 428 Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 428 LHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp CCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcc
Confidence 9999999 566667799999999999999997666669999999999999999975
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.7e-43 Score=392.79 Aligned_cols=448 Identities=20% Similarity=0.219 Sum_probs=262.2
Q ss_pred CCCCEEEccCCccCCCCchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCEEec
Q 038037 150 SNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDL 229 (798)
Q Consensus 150 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 229 (798)
++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|.++++|++|++++|.++. +|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-ISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE-EECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee-cCcc--ccCCccEEec
Confidence 455555555555554444455555555555555555554444455555555555555555542 2222 4455555555
Q ss_pred CCCcCCC-cccccccCCCCCCEEECcCCcCCCCCccccccCCCCceeecCCCCcceEecCCccccccCCccccCCCCCCE
Q 038037 230 SANILSS-ELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKI 308 (798)
Q Consensus 230 ~~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~ 308 (798)
++|.+++ ..|..|+.+++|++|++++|.+.+ ..+..+++| +|++
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L--------------------------------~L~~ 142 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHL--------------------------------NISK 142 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTS--------------------------------CEEE
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch---hhccccccc--------------------------------eeeE
Confidence 5555543 234445555555555555554432 223333444 0044
Q ss_pred EEcCCCCc--cccCCCCcCCCC-CCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCc----
Q 038037 309 LDLRSCSF--WGKVPHSIGNFT-RLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNS---- 381 (798)
Q Consensus 309 L~L~~n~~--~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~---- 381 (798)
|++++|.+ .+..|..+..+. ....+++++|.+.+..+.. .+..+++|+.+++++|.
T Consensus 143 L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~-----------------~~~~l~~L~~L~l~~n~~~~~ 205 (520)
T 2z7x_B 143 VLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDV-----------------SVKTVANLELSNIKCVLEDNK 205 (520)
T ss_dssp EEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCC-----------------CCTTCSEEEECCEEECCSTTT
T ss_pred EEeecccccccccccccccccccceEEEEeccCcchhhhhhh-----------------hhhcccceeeccccccccccc
Confidence 44444444 333333333332 1223333444333222111 23334444444444443
Q ss_pred ---ccCccchHHHhhcCCCCCeEEcccccccccccCCC--CCCccCccEEeeCCCCCC-Ccchhh-----hCCCCccEEE
Q 038037 382 ---YRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATS--NTTSQKFRYVGLRSCNLT-EFPNFL-----KNQHHLVILD 450 (798)
Q Consensus 382 ---l~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~--~~~~~~L~~L~l~~~~l~-~l~~~~-----~~~~~L~~L~ 450 (798)
+.+..+ .+..+++|+.|++++|.++....... ....++|++|++++|.++ .+|..+ ..+++|+.++
T Consensus 206 ~~~~~~~~~---~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~ 282 (520)
T 2z7x_B 206 CSYFLSILA---KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQ 282 (520)
T ss_dssp THHHHHHHH---GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEE
T ss_pred cceeecchh---hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEecc
Confidence 111111 23444555555555443322110000 000123344444444433 344444 5566666666
Q ss_pred CCCCcccCCCC-cccccc-cCcccceeeCCCCccccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecc
Q 038037 451 LSANRIHGKIP-KWLLDP-SMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGE 528 (798)
Q Consensus 451 ls~n~i~~~~~-~~~~~~-~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~ 528 (798)
+++|.+ .+| ..+... ...+++.|++++|.+..... +...+.++.+++++|++++.
T Consensus 283 l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~---------------------~~~l~~L~~L~Ls~n~l~~~ 339 (520)
T 2z7x_B 283 VVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC---------------------PSKISPFLHLDFSNNLLTDT 339 (520)
T ss_dssp EEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC---------------------CSSCCCCCEEECCSSCCCTT
T ss_pred ccccce--ecchhhhhcccccCceeEEEcCCCccccccc---------------------hhhCCcccEEEeECCccChh
Confidence 666666 233 222100 01345555555555543321 13456777777777888877
Q ss_pred cCccccCCCCCCEEEeeCccccc--ccChhhhccccccceeecCCCcccc-ccccccccCCCccEEEcCCCcccccCCcc
Q 038037 529 IPSWICNLNTLKNLVLSHNSLSG--LLPQCLGNFSDELAVLDLQGNNFFG-TIPDTFIKESRLGVIDLSHNLFQGRIPRS 605 (798)
Q Consensus 529 ~~~~~~~l~~L~~L~Ls~n~i~~--~~~~~~~~~~~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~ 605 (798)
.|..+..+++|++|++++|++++ .+|..+..++ +|++|++++|++++ +.+..|..+++|++|++++|++++..|..
T Consensus 340 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~-~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 418 (520)
T 2z7x_B 340 VFENCGHLTELETLILQMNQLKELSKIAEMTTQMK-SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC 418 (520)
T ss_dssp TTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCT-TCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGS
T ss_pred hhhhhccCCCCCEEEccCCccCccccchHHHhhCC-CCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhh
Confidence 88889999999999999999996 4556788887 79999999999998 44456899999999999999998877766
Q ss_pred ccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCChhhh-hcc
Q 038037 606 LVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSF-LCW 684 (798)
Q Consensus 606 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~-~~~ 684 (798)
+. ++|++|++++|+++ .+|..+..+++|++|++++|+++.+.+. .+..+++|+.|++++|+++|.++..++ ..|
T Consensus 419 l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~--~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~ 493 (520)
T 2z7x_B 419 LP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDG--IFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 493 (520)
T ss_dssp CC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCBCCCHHHHHHHHHH
T ss_pred hc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHH--HhccCCcccEEECcCCCCcccCCchHHHHHH
Confidence 64 79999999999998 6676677999999999999999987544 347789999999999999998887776 444
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=6.9e-42 Score=395.73 Aligned_cols=176 Identities=18% Similarity=0.148 Sum_probs=114.9
Q ss_pred CCCCEEEeeCcccccccChhh-hccccccceeecCCCcccccccccccc-------CCCccEEEcCCCcccccCCcccc-
Q 038037 537 NTLKNLVLSHNSLSGLLPQCL-GNFSDELAVLDLQGNNFFGTIPDTFIK-------ESRLGVIDLSHNLFQGRIPRSLV- 607 (798)
Q Consensus 537 ~~L~~L~Ls~n~i~~~~~~~~-~~~~~~L~~L~L~~n~i~~~~~~~~~~-------l~~L~~L~Ls~N~i~~~~~~~~~- 607 (798)
++|++|++++|.++. +|..+ ..++ +|+.|++++|+++.+.+..|.. +++|++|+|++|+++ .+|..+.
T Consensus 673 ~~L~~L~Ls~N~L~~-lp~~~~~~l~-~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~ 749 (876)
T 4ecn_A 673 INASTVTLSYNEIQK-FPTELFATGS-PISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRA 749 (876)
T ss_dssp CCEEEEECCSSCCCS-CCHHHHHTTC-CCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGST
T ss_pred CCcCEEEccCCcCCc-cCHHHHccCC-CCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhh
Confidence 466777777777763 33333 3444 5777777777776444434432 237778888888777 5566665
Q ss_pred -CCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccC------cccccccCCCCCcCCCCcccEEEccCCcCcCCCChhh
Q 038037 608 -NCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRS------NTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKS 680 (798)
Q Consensus 608 -~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~------N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~ 680 (798)
.+++|+.|+|++|++++ +|..+..+++|+.|+|++ |.+.+..|..+ ..+++|+.|++++|++ +.+|...
T Consensus 750 ~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l--~~L~~L~~L~Ls~N~L-~~Ip~~l 825 (876)
T 4ecn_A 750 TTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI--TTCPSLIQLQIGSNDI-RKVDEKL 825 (876)
T ss_dssp TTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTG--GGCSSCCEEECCSSCC-CBCCSCC
T ss_pred ccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHH--hcCCCCCEEECCCCCC-CccCHhh
Confidence 77788888888888776 566677777888887766 55555554433 5677777777777777 4555421
Q ss_pred hhcchhchhccccccccccCCCCCCCCccccchhccccceeeeccCcccccCCccCceeEEEcCCCcccccCchhhhccc
Q 038037 681 FLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLK 760 (798)
Q Consensus 681 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~ 760 (798)
.+.|+.|+|++|++..+.+..+....
T Consensus 826 ------------------------------------------------------~~~L~~LdLs~N~l~~i~~~~~~~~~ 851 (876)
T 4ecn_A 826 ------------------------------------------------------TPQLYILDIADNPNISIDVTSVCPYI 851 (876)
T ss_dssp ------------------------------------------------------CSSSCEEECCSCTTCEEECGGGHHHH
T ss_pred ------------------------------------------------------cCCCCEEECCCCCCCccChHHccccc
Confidence 23567777777777777766776666
Q ss_pred CCCeEeCcCCccc
Q 038037 761 GLQVLNLDNNNLQ 773 (798)
Q Consensus 761 ~L~~L~Ls~N~l~ 773 (798)
.+..+.|++|+..
T Consensus 852 ~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 852 EAGMYVLLYDKTQ 864 (876)
T ss_dssp HTTCCEEECCTTS
T ss_pred cchheeecCCCcc
Confidence 6667777776654
No 22
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=8e-42 Score=390.16 Aligned_cols=364 Identities=22% Similarity=0.282 Sum_probs=226.9
Q ss_pred CccccccCCccccCCCCCCEEEcCCCCcccc-----------------CCCCcC--CCCCCcEEeccCccCcCCcchhcc
Q 038037 289 FNKFSGEFPWSTRNFSSLKILDLRSCSFWGK-----------------VPHSIG--NFTRLQLLYLTFNNFSGDLLGSIG 349 (798)
Q Consensus 289 ~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~-----------------~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~ 349 (798)
.|.+++ +|..+..+++|++|++++|.+.+. +|..++ ++++|++|++++|.+.+..|.
T Consensus 192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~--- 267 (636)
T 4eco_A 192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT--- 267 (636)
T ss_dssp SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCT---
T ss_pred cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChH---
Confidence 355666 677888888888888888888774 777777 888888888888887765554
Q ss_pred cccCCcccccCCCChhhhcCCCCcEEeccCCc-ccC-ccchHHHhhcCCCCCeEEcccccccccccCCCCCCccCccEEe
Q 038037 350 NLRSLKALHVGQIPSSLRNLTQLIVLSLSQNS-YRG-MIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVG 427 (798)
Q Consensus 350 ~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ 427 (798)
.+.++++|++|++++|. +++ ..+.. +..+. ....+++|++|+
T Consensus 268 ---------------~l~~l~~L~~L~Ls~n~~l~~~~lp~~--~~~L~-------------------~~~~l~~L~~L~ 311 (636)
T 4eco_A 268 ---------------FLKALPEMQLINVACNRGISGEQLKDD--WQALA-------------------DAPVGEKIQIIY 311 (636)
T ss_dssp ---------------TTTTCSSCCEEECTTCTTSCHHHHHHH--HHHHH-------------------HSGGGGTCCEEE
T ss_pred ---------------HHhcCCCCCEEECcCCCCCccccchHH--HHhhh-------------------ccccCCCCCEEE
Confidence 67777888888888887 664 22221 22220 000113444444
Q ss_pred eCCCCCCCcch--hhhCCCCccEEECCCCcccCCCCcccccccCcccceeeCCCCccccccCCCCCCCCcEEeccCCccC
Q 038037 428 LRSCNLTEFPN--FLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQ 505 (798)
Q Consensus 428 l~~~~l~~l~~--~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~ 505 (798)
+++|+++.+|. .+..+++|+.|++++|.+.+.+| .+. .+++|++|++++|++..
T Consensus 312 L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~--~l~~L~~L~L~~N~l~~--------------------- 367 (636)
T 4eco_A 312 IGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFG--SEIKLASLNLAYNQITE--------------------- 367 (636)
T ss_dssp CCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCE--EEEEESEEECCSSEEEE---------------------
T ss_pred CCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhC--CCCCCCEEECCCCcccc---------------------
Confidence 44445555666 77888888888888888887777 444 66777777777776653
Q ss_pred CCCCCCCccceEEEeecceeecccCccccCCCC-CCEEEeeCcccccccChhhhccc-cccceeecCCCccccccccccc
Q 038037 506 GPLPVPPPETILYLVSNNSLTGEIPSWICNLNT-LKNLVLSHNSLSGLLPQCLGNFS-DELAVLDLQGNNFFGTIPDTFI 583 (798)
Q Consensus 506 ~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~i~~~~~~~~~~~~-~~L~~L~L~~n~i~~~~~~~~~ 583 (798)
+|..+..+++ |++|++++|.++ .+|..+.... .+|++|++++|.+++..|..|.
T Consensus 368 -----------------------lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 423 (636)
T 4eco_A 368 -----------------------IPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD 423 (636)
T ss_dssp -----------------------CCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSC
T ss_pred -----------------------ccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhc
Confidence 3344555566 666666666666 4454443321 1466666666666666666555
Q ss_pred -------cCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCC-------CCCEEEccCcccccc
Q 038037 584 -------KESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLP-------NLNVLILRSNTFYGI 649 (798)
Q Consensus 584 -------~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~-------~L~~L~L~~N~l~~~ 649 (798)
.+++|++|++++|+++.+.+..+..+++|++|+|++|+++.+.+..+.... +|+.|+|++|+++.+
T Consensus 424 ~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l 503 (636)
T 4eco_A 424 PLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKL 503 (636)
T ss_dssp TTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBC
T ss_pred ccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCcc
Confidence 556666666666666644444455566666666666666643333333322 666666666666643
Q ss_pred cCCCCCcCCCCcccEEEccCCcCcCCCChhhhhcchhchhccccccccccCCCCCCCCccccchhccccceeeeccCccc
Q 038037 650 IKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMM 729 (798)
Q Consensus 650 ~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (798)
. ..+....+++|+.|++++|++++ +|.....
T Consensus 504 p-~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~----------------------------------------------- 534 (636)
T 4eco_A 504 S-DDFRATTLPYLVGIDLSYNSFSK-FPTQPLN----------------------------------------------- 534 (636)
T ss_dssp C-GGGSTTTCTTCCEEECCSSCCSS-CCCGGGG-----------------------------------------------
T ss_pred C-hhhhhccCCCcCEEECCCCCCCC-cChhhhc-----------------------------------------------
Confidence 2 21111256666677777776664 5533110
Q ss_pred ccCCccCceeEEEc------CCCcccccCchhhhcccCCCeEeCcCCccccCCCccccCCCCCCeEeCCCCcCC
Q 038037 730 TYNKIPDILTGIIL------SSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFF 797 (798)
Q Consensus 730 ~~~~~~~~L~~L~L------s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 797 (798)
.+.|+.|+| ++|++.+.+|..+..+++|++|+|++|+++ .+|..+. ++|+.|||++|+++
T Consensus 535 -----l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 535 -----SSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp -----CSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTC
T ss_pred -----CCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCc
Confidence 245566666 456666677777777777777777777774 4455444 67777777777653
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=6.1e-41 Score=379.20 Aligned_cols=467 Identities=21% Similarity=0.236 Sum_probs=286.2
Q ss_pred CCEEEccCCccCCCCchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCEEecCC
Q 038037 152 LETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSA 231 (798)
Q Consensus 152 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 231 (798)
.++++++++.++. +|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++++
T Consensus 33 ~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 33 ESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 3555555555543 333222 5566666666666655555666666666666666666655555566666666666666
Q ss_pred CcCCCcccccccCCCCCCEEECcCCcCCCC-CccccccCCCCceeecCCCCcceEecCCccccccCCccccCCCCC--CE
Q 038037 232 NILSSELPTSIGNLSSLKKLDLSQNRFFSE-LPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSL--KI 308 (798)
Q Consensus 232 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L--~~ 308 (798)
|.++. +|.. .+++|++|++++|++.+. .|..|+.+++|++|++++|++.. ..+..+++| ++
T Consensus 110 N~l~~-lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~-------------~~~~~l~~L~L~~ 173 (562)
T 3a79_B 110 NRLQN-ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ-------------LDLLPVAHLHLSC 173 (562)
T ss_dssp SCCCE-ECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT-------------TTTGGGTTSCEEE
T ss_pred CcCCc-cCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc-------------CchhhhhhceeeE
Confidence 66652 3333 556666666666666442 23556666666555555554432 122333334 66
Q ss_pred EEcCCCCc--cccCCCCcCCCC-CCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCcc--c
Q 038037 309 LDLRSCSF--WGKVPHSIGNFT-RLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSY--R 383 (798)
Q Consensus 309 L~L~~n~~--~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l--~ 383 (798)
|++++|.+ .+..|..+..+. ..-.++++.|.+.+..+.. .+..+++|+.+++++|.. .
T Consensus 174 L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~-----------------~~~~l~~L~~L~l~~n~~~~~ 236 (562)
T 3a79_B 174 ILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNM-----------------SVNALGHLQLSNIKLNDENCQ 236 (562)
T ss_dssp EEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEE-----------------EESSEEEEEEEEEECCSTTHH
T ss_pred EEeecccccccccCcccccccCcceEEEEecCccchhhhhhh-----------------cccccceEEEecccccccccc
Confidence 66666665 555555554433 1113455555554432221 344556666666666641 1
Q ss_pred CccchHHHhhcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCcc
Q 038037 384 GMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKW 463 (798)
Q Consensus 384 ~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~ 463 (798)
........+..+++|+.++++++.+... .+..++..+ ..++|++|++++|.+.+.+|..
T Consensus 237 ~l~~~~~~l~~l~~L~~L~L~~~~l~~~--------------------~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~ 295 (562)
T 3a79_B 237 RLMTFLSELTRGPTLLNVTLQHIETTWK--------------------CSVKLFQFF-WPRPVEYLNIYNLTITERIDRE 295 (562)
T ss_dssp HHHHHHHHHHSCSSCEEEEEEEEEECHH--------------------HHHHHHHHH-TTSSEEEEEEEEEEECSCCCCC
T ss_pred hHHHHHHHHhccCcceEEEecCCcCcHH--------------------HHHHHHHhh-hcccccEEEEeccEeeccccch
Confidence 1111112345666666666665543221 111112211 1224555555555544444443
Q ss_pred ccc---ccCcccceeeCCCCccccccCC-----CCCCCCcEEeccCCccCCCCC-CCCccceEEEeecceeecccCcccc
Q 038037 464 LLD---PSMQYLNALNLSHNLLTRFDQH-----PAVLPGKTFDFSSNNLQGPLP-VPPPETILYLVSNNSLTGEIPSWIC 534 (798)
Q Consensus 464 ~~~---~~l~~L~~L~ls~n~l~~~~~~-----~~~~~l~~l~l~~n~l~~~~~-~~~~~l~~l~l~~n~l~~~~~~~~~ 534 (798)
++. ..++.|+.++++.+.+ .++.. .....++.+++++|.+..... ...++++.+++++|++++..|..+.
T Consensus 296 ~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 374 (562)
T 3a79_B 296 EFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCS 374 (562)
T ss_dssp CCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCC
T ss_pred hhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhc
Confidence 321 1222333333333322 11100 001345566666665554443 4567888888888888888889999
Q ss_pred CCCCCCEEEeeCccccccc--ChhhhccccccceeecCCCcccc-ccccccccCCCccEEEcCCCcccccCCccccCCCC
Q 038037 535 NLNTLKNLVLSHNSLSGLL--PQCLGNFSDELAVLDLQGNNFFG-TIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSK 611 (798)
Q Consensus 535 ~l~~L~~L~Ls~n~i~~~~--~~~~~~~~~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~ 611 (798)
.+++|++|++++|++++.. |..+..++ +|++|++++|++++ ..+..|.++++|++|++++|++++..|..+. ++
T Consensus 375 ~l~~L~~L~L~~N~l~~~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~ 451 (562)
T 3a79_B 375 TLKRLQTLILQRNGLKNFFKVALMTKNMS-SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PK 451 (562)
T ss_dssp SCSSCCEEECCSSCCCBTTHHHHTTTTCT-TCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TT
T ss_pred ccCCCCEEECCCCCcCCcccchhhhcCCC-CCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--Cc
Confidence 9999999999999999743 45677887 79999999999998 5555789999999999999999877666554 79
Q ss_pred CcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCChhhhh
Q 038037 612 LEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFL 682 (798)
Q Consensus 612 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~ 682 (798)
|++|++++|+++ .+|..+..+++|++|+|++|+++++.+. .+..+++|+.|++++|++.|.+|..++.
T Consensus 452 L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~--~~~~l~~L~~L~l~~N~~~c~c~~~~~~ 519 (562)
T 3a79_B 452 VKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDG--VFDRLTSLQYIWLHDNPWDCTCPGIRYL 519 (562)
T ss_dssp CSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTT--STTTCTTCCCEECCSCCBCCCHHHHHHH
T ss_pred CCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHH--HHhcCCCCCEEEecCCCcCCCcchHHHH
Confidence 999999999998 4565566999999999999999987554 3478899999999999999999877763
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.5e-40 Score=376.01 Aligned_cols=459 Identities=20% Similarity=0.217 Sum_probs=282.1
Q ss_pred CCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCEEecCCCcCCCcccccccCCCCCCEEECc
Q 038037 175 SLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLS 254 (798)
Q Consensus 175 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 254 (798)
..++++++++.+++++. .+. ++|++|++++|.+.+..+..|..+++|++|++++|.+++..|.+|.++++|++|+++
T Consensus 32 ~~~~l~ls~~~L~~ip~-~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPK-DLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108 (562)
T ss_dssp -CCEEECTTSCCCSCCT-TSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred CCcEEEcCCCCCccCCC-CCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence 34667777776665332 222 566666666666666655666666666666666666666556666666666666666
Q ss_pred CCcCCCCCccccccCCCCceeecCCCCcceEecCCccccccCCccccCCCCCCEEEcCCCCccccCCCCcCCCCCC--cE
Q 038037 255 QNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRL--QL 332 (798)
Q Consensus 255 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L--~~ 332 (798)
+|++. .+|.. .+++|++|++++|++..+. .|..+..+++|++|++++|.+.+ ..+..+++| ++
T Consensus 109 ~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~---------~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~ 173 (562)
T 3a79_B 109 HNRLQ-NISCC--PMASLRHLDLSFNDFDVLP---------VCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSC 173 (562)
T ss_dssp TSCCC-EECSC--CCTTCSEEECCSSCCSBCC---------CCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEE
T ss_pred CCcCC-ccCcc--ccccCCEEECCCCCccccC---------chHhhcccCcccEEecCCCcccc---CchhhhhhceeeE
Confidence 66664 23332 5566655555555544331 23455556666666666665543 223333444 55
Q ss_pred EeccCccC--cCCcchhcccccCCcccccCCCChhhhcCC-CCcEEeccCCcccCccchHHHhhcCCCCCeEEccccccc
Q 038037 333 LYLTFNNF--SGDLLGSIGNLRSLKALHVGQIPSSLRNLT-QLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLS 409 (798)
Q Consensus 333 L~l~~n~l--~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~i~ 409 (798)
|++++|.+ ++..+..+ ..+. +.-.+++++|.+....... .+..++
T Consensus 174 L~L~~n~l~~~~~~~~~l------------------~~l~~~~l~l~l~~n~~~~~~~~~-~~~~l~------------- 221 (562)
T 3a79_B 174 ILLDLVSYHIKGGETESL------------------QIPNTTVLHLVFHPNSLFSVQVNM-SVNALG------------- 221 (562)
T ss_dssp EEEEESSCCCCSSSCCEE------------------EECCEEEEEEEECSSSCCCCCCEE-EESSEE-------------
T ss_pred EEeecccccccccCcccc------------------cccCcceEEEEecCccchhhhhhh-cccccc-------------
Confidence 66665555 43333321 1111 0112344444433221110 122233
Q ss_pred ccccCCCCCCccCccEEeeCCCCC-----CCcchhhhCCCCccEEECCCCcccCCCCcccccccCcccceeeCCCCcccc
Q 038037 410 LLTKATSNTTSQKFRYVGLRSCNL-----TEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTR 484 (798)
Q Consensus 410 ~~~~~~~~~~~~~L~~L~l~~~~l-----~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~ 484 (798)
+|+.+++++|+. ......+..++.++.++++++.+.+.... .
T Consensus 222 ------------~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~---------------------~ 268 (562)
T 3a79_B 222 ------------HLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSV---------------------K 268 (562)
T ss_dssp ------------EEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHH---------------------H
T ss_pred ------------eEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHH---------------------H
Confidence 333333333321 11223345556666666655544321110 0
Q ss_pred ccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecccCccc-----cCCCCCCEEEeeCcccccccC-hhhh
Q 038037 485 FDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWI-----CNLNTLKNLVLSHNSLSGLLP-QCLG 558 (798)
Q Consensus 485 ~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~-----~~l~~L~~L~Ls~n~i~~~~~-~~~~ 558 (798)
+... ...++++.+++++|.+++.+|..+ ..++.|+.++++.+.+ .+| ..+.
T Consensus 269 ~~~~---------------------~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~ 325 (562)
T 3a79_B 269 LFQF---------------------FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALY 325 (562)
T ss_dssp HHHH---------------------HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHH
T ss_pred HHHh---------------------hhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhh
Confidence 0000 001244555555566665566555 5566666666666666 233 2222
Q ss_pred ccc--cccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccC--CcccCCCC
Q 038037 559 NFS--DELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTF--PSWLGTLP 634 (798)
Q Consensus 559 ~~~--~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~l~ 634 (798)
.+. .+|++|++++|.+.... .+..+++|++|++++|.+++..|..+.++++|++|++++|+++++. |..|..++
T Consensus 326 ~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~ 403 (562)
T 3a79_B 326 SVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMS 403 (562)
T ss_dssp HHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCT
T ss_pred hhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCC
Confidence 220 25999999999886432 2267899999999999999888889999999999999999998643 46688999
Q ss_pred CCCEEEccCccccc-ccCCCCCcCCCCcccEEEccCCcCcCCCChhhhhcchhchhccccccccccCCCCCCCCccccch
Q 038037 635 NLNVLILRSNTFYG-IIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLI 713 (798)
Q Consensus 635 ~L~~L~L~~N~l~~-~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (798)
+|+.|++++|++++ +.+. .+..+++|+.|++++|++++.+|..
T Consensus 404 ~L~~L~l~~N~l~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~---------------------------------- 447 (562)
T 3a79_B 404 SLETLDVSLNSLNSHAYDR--TCAWAESILVLNLSSNMLTGSVFRC---------------------------------- 447 (562)
T ss_dssp TCCEEECTTSCCBSCCSSC--CCCCCTTCCEEECCSSCCCGGGGSS----------------------------------
T ss_pred CCCEEECCCCcCCCccChh--hhcCcccCCEEECCCCCCCcchhhh----------------------------------
Confidence 99999999999988 4333 2367899999999999987533321
Q ss_pred hccccceeeeccCcccccCCccCceeEEEcCCCcccccCchhhhcccCCCeEeCcCCccccCCCccccCCCCCCeEeCCC
Q 038037 714 STYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSN 793 (798)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 793 (798)
+++.|+.|+|++|+|+. +|..+..+++|++|+|++|+++.+++..|..+++|+.|++++
T Consensus 448 --------------------l~~~L~~L~L~~N~l~~-ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~ 506 (562)
T 3a79_B 448 --------------------LPPKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHD 506 (562)
T ss_dssp --------------------CCTTCSEEECCSSCCCC-CCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCS
T ss_pred --------------------hcCcCCEEECCCCcCcc-cChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecC
Confidence 13578999999999995 455556999999999999999976666699999999999999
Q ss_pred CcCCC
Q 038037 794 NRFFF 798 (798)
Q Consensus 794 N~l~~ 798 (798)
|+++|
T Consensus 507 N~~~c 511 (562)
T 3a79_B 507 NPWDC 511 (562)
T ss_dssp CCBCC
T ss_pred CCcCC
Confidence 99975
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=7.6e-37 Score=337.13 Aligned_cols=401 Identities=23% Similarity=0.212 Sum_probs=271.0
Q ss_pred cEEEccCCCCCCccchhccCCCCCCEEecCCCcCCCcccccccCCCCCCEEECcCCcCCCC-CccccccCCCCceeecCC
Q 038037 201 LHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSE-LPTSIGNLGSLKVLDLSR 279 (798)
Q Consensus 201 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~l~~ 279 (798)
+.++.+++.++.. |. + .++|++|++++|.+++..|..|.++++|++|++++|.+... .+..|..+++|++|++++
T Consensus 13 ~~~~c~~~~l~~l-p~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 13 YNAICINRGLHQV-PE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TEEECCSSCCSSC-CC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred cccCcCCCCcccC-CC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 3566666666633 32 2 26778888888877776677777778888888887777533 345677777776666666
Q ss_pred CCcceEecCCccccccCCccccCCCCCCEEEcCCCCccccCC--CCcCCCCCCcEEeccCccCcCCcchhcccccCCccc
Q 038037 280 NGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVP--HSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKAL 357 (798)
Q Consensus 280 n~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l 357 (798)
|++..+ .|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..
T Consensus 89 n~l~~~----------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---------- 148 (455)
T 3v47_A 89 NQFLQL----------ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS---------- 148 (455)
T ss_dssp CTTCEE----------CTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCG----------
T ss_pred CccCcc----------ChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCccc----------
Confidence 665443 35566667777777777777655332 33666777777777777666544331
Q ss_pred ccCCCChhhhcCCCCcEEeccCCcccCccchHHHhhcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcc
Q 038037 358 HVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFP 437 (798)
Q Consensus 358 ~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~ 437 (798)
.+..+++|++|++++|.+.+..+..+.--...+++.+++++|.+..++...... ...
T Consensus 149 -------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~----------------~~~ 205 (455)
T 3v47_A 149 -------FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW----------------EKC 205 (455)
T ss_dssp -------GGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTH----------------HHH
T ss_pred -------ccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccc----------------ccc
Confidence 255666667777777666654433211111134555555555444333211100 000
Q ss_pred hhhhCCCCccEEECCCCcccCCCCccccc-ccCcccceeeCCCCccccccCCCCCCCCcEEeccCCccCCCCCCCCccce
Q 038037 438 NFLKNQHHLVILDLSANRIHGKIPKWLLD-PSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETI 516 (798)
Q Consensus 438 ~~~~~~~~L~~L~ls~n~i~~~~~~~~~~-~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~ 516 (798)
..+..+++|++|++++|.+.+..|..+.. ....+++.+++++|........ .+
T Consensus 206 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~------------~~-------------- 259 (455)
T 3v47_A 206 GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG------------HT-------------- 259 (455)
T ss_dssp CCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT------------CC--------------
T ss_pred ccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc------------hh--------------
Confidence 11234567777777777777655554431 1225667777776654432110 00
Q ss_pred EEEeecceeecccCcccc--CCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcC
Q 038037 517 LYLVSNNSLTGEIPSWIC--NLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLS 594 (798)
Q Consensus 517 ~l~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls 594 (798)
.+....+..+. ..++|++|++++|.+++..|..+..++ +|++|++++|++++..|..|.++++|++|+++
T Consensus 260 -------~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 331 (455)
T 3v47_A 260 -------NFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT-DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLS 331 (455)
T ss_dssp -------SSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred -------hhccCcccccccccccCceEEEecCccccccchhhcccCC-CCCEEECCCCcccccChhHhcCcccCCEEECC
Confidence 11111112222 246899999999999988888888887 79999999999999889999999999999999
Q ss_pred CCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcC
Q 038037 595 HNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTG 674 (798)
Q Consensus 595 ~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~ 674 (798)
+|.+++..|..|.++++|++|+|++|++++..|..|..+++|++|++++|+++++.+.. +..+++|+.|++++|+++|
T Consensus 332 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 332 QNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGI--FDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp SSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTT--TTTCTTCCEEECCSSCBCC
T ss_pred CCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhH--hccCCcccEEEccCCCccc
Confidence 99999888899999999999999999999988999999999999999999999876554 3678999999999999999
Q ss_pred CCCh-hhhhcc
Q 038037 675 KLPS-KSFLCW 684 (798)
Q Consensus 675 ~~p~-~~~~~~ 684 (798)
.+|. .++..|
T Consensus 410 ~~~~~~~l~~~ 420 (455)
T 3v47_A 410 SCPRIDYLSRW 420 (455)
T ss_dssp CTTTTHHHHHH
T ss_pred CCCcchHHHHH
Confidence 9984 444333
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.8e-35 Score=326.09 Aligned_cols=375 Identities=19% Similarity=0.164 Sum_probs=226.4
Q ss_pred CCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCc-cchhccCCCCCCEEecCCCcCCCcccccccCCCCCCEEE
Q 038037 174 SSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGE-LLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLD 252 (798)
Q Consensus 174 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 252 (798)
++|++|++++|.+++..+..|.++++|++|++++|.+.+. .+..|..+++|++|++++|.+++..|..|.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 4555666666555555555555566666666666555422 234455556666666666665555555555666666666
Q ss_pred CcCCcCCCCCccc--cccCCCCceeecCCCCcceEecCCccccccCCcc-ccCCCCCCEEEcCCCCccccCCCCcCCC--
Q 038037 253 LSQNRFFSELPTS--IGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWS-TRNFSSLKILDLRSCSFWGKVPHSIGNF-- 327 (798)
Q Consensus 253 L~~n~i~~~~~~~--~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~L~~n~~~~~~~~~~~~l-- 327 (798)
+++|.+.+..+.. +..+++|++|++++|++.. ..|.. +..+++|++|++++|.+.+..+..+..+
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~----------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 179 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK----------IQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQG 179 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCS----------CCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCc----------cCcccccCCCCcccEEeCCCCcccccChhhhhcccc
Confidence 6666554432222 5555555555444444322 22322 4555666666666666655555555544
Q ss_pred CCCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCcccCccchHH-HhhcCCCCCeEEcccc
Q 038037 328 TRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDF-LLTSLKNLEALVLSSN 406 (798)
Q Consensus 328 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~l~~L~~L~l~~n 406 (798)
++++.|++++|.+.+..+..+... ....+..+++|++|++++|.+.+..+..+ .....++|+.|++++|
T Consensus 180 ~~L~~L~l~~n~l~~~~~~~~~~~----------~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~ 249 (455)
T 3v47_A 180 KHFTLLRLSSITLQDMNEYWLGWE----------KCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS 249 (455)
T ss_dssp CEEEEEECTTCBCTTCSTTCTTHH----------HHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTC
T ss_pred ccccccccccCcccccchhhcccc----------ccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccc
Confidence 566666666666654332211000 00012334566666666666554333221 0111234444444443
Q ss_pred cccccccCCCCCCccCccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCcccccccCcccceeeCCCCcccccc
Q 038037 407 RLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFD 486 (798)
Q Consensus 407 ~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~ 486 (798)
.+.... +..+.+....+..+.....+
T Consensus 250 ~~~~~~--------------------------------------~~~~~~~~~~~~~~~~~~~~---------------- 275 (455)
T 3v47_A 250 YNMGSS--------------------------------------FGHTNFKDPDNFTFKGLEAS---------------- 275 (455)
T ss_dssp TTTSCC--------------------------------------TTCCSSCCCCTTTTGGGTTS----------------
T ss_pred cccccc--------------------------------------cchhhhccCccccccccccc----------------
Confidence 211100 00000100000111100112
Q ss_pred CCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccce
Q 038037 487 QHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAV 566 (798)
Q Consensus 487 ~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~ 566 (798)
.++.+++++|.+++..|..+..+++|++|++++|.+++..|..+..++ +|++
T Consensus 276 ---------------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~ 327 (455)
T 3v47_A 276 ---------------------------GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT-HLLK 327 (455)
T ss_dssp ---------------------------CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCE
T ss_pred ---------------------------CceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcc-cCCE
Confidence 333344444444456677788899999999999999988888888887 7999
Q ss_pred eecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCccc
Q 038037 567 LDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTF 646 (798)
Q Consensus 567 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l 646 (798)
|++++|.+++..+..|.++++|++|++++|++++..|..|..+++|++|++++|++++..+..|..+++|+.|++++|++
T Consensus 328 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 328 LNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp EECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCc
Confidence 99999999988889999999999999999999988899999999999999999999988778889999999999999998
Q ss_pred cccc
Q 038037 647 YGII 650 (798)
Q Consensus 647 ~~~~ 650 (798)
+...
T Consensus 408 ~~~~ 411 (455)
T 3v47_A 408 DCSC 411 (455)
T ss_dssp CCCT
T ss_pred ccCC
Confidence 7653
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1e-36 Score=332.22 Aligned_cols=408 Identities=22% Similarity=0.217 Sum_probs=169.3
Q ss_pred CCCCEEEccCCccCCCCchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCEEec
Q 038037 150 SNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDL 229 (798)
Q Consensus 150 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 229 (798)
+.|++|++++|.+ +.+|..++++++|++|++++|.+.+..|..++.+++|+.+++.+|.. .++++|++
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~l 78 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELEL 78 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEEC
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEEe
Confidence 4555555555555 44555556666666666666665555555555555543333332210 23444444
Q ss_pred CCCcCCCcccccccCCCCCCEEECcCCcCCCCCccccccCCCCceeecCCCCcceEecCCccccccCCccccCCCCCCEE
Q 038037 230 SANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKIL 309 (798)
Q Consensus 230 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~L 309 (798)
++|.+++ +|.. .++|++|++++|.+.+ +|.. +++|++|++++|+++.+. . ..++|++|
T Consensus 79 ~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~-----------~---~~~~L~~L 136 (454)
T 1jl5_A 79 NNLGLSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALS-----------D---LPPLLEYL 136 (454)
T ss_dssp TTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCC-----------S---CCTTCCEE
T ss_pred cCCcccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCccc-----------C---CCCCCCEE
Confidence 4444442 1211 2345555555555433 2221 244544444444443221 0 01455666
Q ss_pred EcCCCCccccCCCCcCCCCCCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCcccCccchH
Q 038037 310 DLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELD 389 (798)
Q Consensus 310 ~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 389 (798)
++++|.+.+ +| .++.+++|++|++++|++++. +. . .++|++|++++|.+.+++.
T Consensus 137 ~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~l-p~------------------~---~~~L~~L~L~~n~l~~l~~-- 190 (454)
T 1jl5_A 137 GVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKKL-PD------------------L---PPSLEFIAAGNNQLEELPE-- 190 (454)
T ss_dssp ECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSCC-CC------------------C---CTTCCEEECCSSCCSSCCC--
T ss_pred ECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCccc-CC------------------C---cccccEEECcCCcCCcCcc--
Confidence 666665543 34 355666666666666655531 11 1 1256666666666655431
Q ss_pred HHhhcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCcccccccC
Q 038037 390 FLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSM 469 (798)
Q Consensus 390 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l 469 (798)
+..+++|+.|++++|+++.++.. ..+|++|++++|.++.+|. +..+++|++|++++|++++ +|. ..
T Consensus 191 --~~~l~~L~~L~l~~N~l~~l~~~-----~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~-l~~-----~~ 256 (454)
T 1jl5_A 191 --LQNLPFLTAIYADNNSLKKLPDL-----PLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKT-LPD-----LP 256 (454)
T ss_dssp --CTTCTTCCEEECCSSCCSSCCCC-----CTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSS-CCS-----CC
T ss_pred --ccCCCCCCEEECCCCcCCcCCCC-----cCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCc-ccc-----cc
Confidence 35666666666666665544322 2466777777777766664 6667777777777777764 332 23
Q ss_pred cccceeeCCCCccccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCccc
Q 038037 470 QYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSL 549 (798)
Q Consensus 470 ~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i 549 (798)
++|+.|++++|+++.++.. ...++.+++++|.+++.. ..++ +|++|++++|++
T Consensus 257 ~~L~~L~l~~N~l~~l~~~--~~~L~~L~ls~N~l~~l~-~~~~------------------------~L~~L~l~~N~l 309 (454)
T 1jl5_A 257 PSLEALNVRDNYLTDLPEL--PQSLTFLDVSENIFSGLS-ELPP------------------------NLYYLNASSNEI 309 (454)
T ss_dssp TTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSEES-CCCT------------------------TCCEEECCSSCC
T ss_pred cccCEEECCCCcccccCcc--cCcCCEEECcCCccCccc-CcCC------------------------cCCEEECcCCcC
Confidence 5667777777766654432 244555555555544321 1123 444444444444
Q ss_pred ccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCc--cCC
Q 038037 550 SGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISD--TFP 627 (798)
Q Consensus 550 ~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~--~~~ 627 (798)
++. + .++++|++|++++|++++ +|.. +++|++|++++|+++. +|. .+++|++|++++|++++ ..|
T Consensus 310 ~~i-~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip 376 (454)
T 1jl5_A 310 RSL-C----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIP 376 (454)
T ss_dssp SEE-C----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCC
T ss_pred Ccc-c----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCCh
Confidence 421 1 122234455555554443 2221 2445555555555442 232 23445555555555544 233
Q ss_pred cccCC-------------CCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCC
Q 038037 628 SWLGT-------------LPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLP 677 (798)
Q Consensus 628 ~~~~~-------------l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p 677 (798)
.++.. +++|+.|++++|+++++..- .++++.|.+++|.+.+.+|
T Consensus 377 ~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~i------P~sl~~L~~~~~~~~~~~~ 433 (454)
T 1jl5_A 377 ESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDI------PESVEDLRMNSERVVDPYE 433 (454)
T ss_dssp TTCCEEECCC-----------------------------------------------------
T ss_pred HHHHhhhhcccccccccccCcCCEEECCCCcCCccccc------hhhHhheeCcCcccCCccc
Confidence 33332 25677777777776653111 1345666666666655433
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=9.8e-36 Score=324.49 Aligned_cols=353 Identities=20% Similarity=0.265 Sum_probs=162.9
Q ss_pred cccccCCCCCCEEECcCCcCCCCCccccccCCCCceeecCCCCcceEecCCccccccCCccccCCCCC------------
Q 038037 239 PTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSL------------ 306 (798)
Q Consensus 239 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L------------ 306 (798)
|+.+ +.+.|++|++++|.+ +.+|..++.+++|++|++++| .+.+.+|..++.+++|
T Consensus 5 p~~~-~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n----------~~~~~~p~~~~~l~~L~~l~l~~c~~~~ 72 (454)
T 1jl5_A 5 PRNV-SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWS----------EWERNAPPGNGEQREMAVSRLRDCLDRQ 72 (454)
T ss_dssp -------------------------------CCHHHHHHHHH----------HHHHTSCTTSCCCHHHHHHHHHHHHHHT
T ss_pred cccc-ccccchhhhcccCch-hhCChhHhcccchhhhhccCC----------cccccCCcccccchhcchhhhhhhhccC
Confidence 4444 357899999999998 778888899999966655554 4455677777777665
Q ss_pred -CEEEcCCCCccccCCCCcCCCCCCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCcccCc
Q 038037 307 -KILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGM 385 (798)
Q Consensus 307 -~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~~ 385 (798)
++|++++|.+.+ +|.. .++|++|++++|.+++. +. .+++|++|++++|.+.++
T Consensus 73 l~~L~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~l-p~---------------------~~~~L~~L~l~~n~l~~l 126 (454)
T 1jl5_A 73 AHELELNNLGLSS-LPEL---PPHLESLVASCNSLTEL-PE---------------------LPQSLKSLLVDNNNLKAL 126 (454)
T ss_dssp CSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCSSC-CC---------------------CCTTCCEEECCSSCCSCC
T ss_pred CCEEEecCCcccc-CCCC---cCCCCEEEccCCcCCcc-cc---------------------ccCCCcEEECCCCccCcc
Confidence 677777776643 2321 25667777777666541 11 124566667776666654
Q ss_pred cchHHHhhcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCcccc
Q 038037 386 IELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLL 465 (798)
Q Consensus 386 ~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~ 465 (798)
... .++|++|++++|+++.++ ....+++|++|++++|+++.+|... ++|++|++++|.+++ +|. +.
T Consensus 127 ~~~------~~~L~~L~L~~n~l~~lp---~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~-l~~-~~ 192 (454)
T 1jl5_A 127 SDL------PPLLEYLGVSNNQLEKLP---ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEE-LPE-LQ 192 (454)
T ss_dssp CSC------CTTCCEEECCSSCCSSCC---CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSS-CCC-CT
T ss_pred cCC------CCCCCEEECcCCCCCCCc---ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCc-Ccc-cc
Confidence 321 146666666666665544 2344556666666666666655432 366666666666654 332 22
Q ss_pred cccCcccceeeCCCCccccccCCCCCCCCcEEeccCCccCCCCC-CCCccceEEEeecceeecccCccccCCCCCCEEEe
Q 038037 466 DPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLP-VPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVL 544 (798)
Q Consensus 466 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~-~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~L 544 (798)
.+++|++|++++|+++.++... .+++.+++++|.+...+. ...+.++.+++++|++++ +|.. .++|++|++
T Consensus 193 --~l~~L~~L~l~~N~l~~l~~~~--~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l 264 (454)
T 1jl5_A 193 --NLPFLTAIYADNNSLKKLPDLP--LSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNV 264 (454)
T ss_dssp --TCTTCCEEECCSSCCSSCCCCC--TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEEC
T ss_pred --CCCCCCEEECCCCcCCcCCCCc--CcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCc-cccc---ccccCEEEC
Confidence 5566666666666665543321 355555555555543221 123444555555555443 2221 244555555
Q ss_pred eCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCc
Q 038037 545 SHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISD 624 (798)
Q Consensus 545 s~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~ 624 (798)
++|++++ +|.. +.+|++|++++|+++++. .. .++|++|++++|+++++ +. ..++|++|++++|++++
T Consensus 265 ~~N~l~~-l~~~----~~~L~~L~ls~N~l~~l~-~~---~~~L~~L~l~~N~l~~i-~~---~~~~L~~L~Ls~N~l~~ 331 (454)
T 1jl5_A 265 RDNYLTD-LPEL----PQSLTFLDVSENIFSGLS-EL---PPNLYYLNASSNEIRSL-CD---LPPSLEELNVSNNKLIE 331 (454)
T ss_dssp CSSCCSC-CCCC----CTTCCEEECCSSCCSEES-CC---CTTCCEEECCSSCCSEE-CC---CCTTCCEEECCSSCCSC
T ss_pred CCCcccc-cCcc----cCcCCEEECcCCccCccc-Cc---CCcCCEEECcCCcCCcc-cC---CcCcCCEEECCCCcccc
Confidence 5555443 2211 124555555555544321 10 13455555555554431 11 01345555555555543
Q ss_pred cCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcC
Q 038037 625 TFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTG 674 (798)
Q Consensus 625 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~ 674 (798)
+|.. +++|+.|++++|+++++.. .+++|+.|++++|++++
T Consensus 332 -lp~~---~~~L~~L~L~~N~l~~lp~------~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 332 -LPAL---PPRLERLIASFNHLAEVPE------LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp -CCCC---CTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCSS
T ss_pred -cccc---CCcCCEEECCCCccccccc------hhhhccEEECCCCCCCc
Confidence 2221 2445555555555543321 13445555555555543
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.4e-33 Score=310.93 Aligned_cols=345 Identities=25% Similarity=0.337 Sum_probs=243.9
Q ss_pred cCCCCcEEeccCCcccCccchHHHhhcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcchhhhCCCCcc
Q 038037 368 NLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLV 447 (798)
Q Consensus 368 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~ 447 (798)
.+++++.|++.++.+..++. +..+++|++|++++|.++.++. ...+++|++|++++|.++.++. +..+++|+
T Consensus 44 ~l~~l~~L~l~~~~i~~l~~----~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~ 115 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSIDG----VEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADITP-LANLTNLT 115 (466)
T ss_dssp HHHTCCEEECCSSCCCCCTT----GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCGG-GTTCTTCC
T ss_pred HhccccEEecCCCCCccCcc----hhhhcCCCEEECCCCccCCchh---hhccccCCEEECCCCccccChh-hcCCCCCC
Confidence 35567777777777766543 4567777777777777766654 3456777777777777777766 77777788
Q ss_pred EEECCCCcccCCCCcccccccCcccceeeCCCCccccccCCCCCCCCcEEeccCCccCCCC-CCCCccceEEEeecceee
Q 038037 448 ILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPL-PVPPPETILYLVSNNSLT 526 (798)
Q Consensus 448 ~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~-~~~~~~l~~l~l~~n~l~ 526 (798)
+|++++|.+++..+ +. .+++|++|++++|.+..++.......++.+++++ .+.+.. ....+.++.+++++|.+.
T Consensus 116 ~L~L~~n~l~~~~~--~~--~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 116 GLTLFNNQITDIDP--LK--NLTNLNRLELSSNTISDISALSGLTSLQQLSFGN-QVTDLKPLANLTTLERLDISSNKVS 190 (466)
T ss_dssp EEECCSSCCCCCGG--GT--TCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEE-SCCCCGGGTTCTTCCEEECCSSCCC
T ss_pred EEECCCCCCCCChH--Hc--CCCCCCEEECCCCccCCChhhccCCcccEeecCC-cccCchhhccCCCCCEEECcCCcCC
Confidence 88888777765432 32 6777778888777777766656666777777753 333322 233567777777777776
Q ss_pred cccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccc
Q 038037 527 GEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSL 606 (798)
Q Consensus 527 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~ 606 (798)
+. ..+..+++|++|++++|.+++..+ +..++ +|++|++++|.+++. ..+..+++|++|++++|.+++..+ +
T Consensus 191 ~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~-~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~ 261 (466)
T 1o6v_A 191 DI--SVLAKLTNLESLIATNNQISDITP--LGILT-NLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--L 261 (466)
T ss_dssp CC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCT-TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred CC--hhhccCCCCCEEEecCCccccccc--ccccC-CCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--h
Confidence 54 246777888888888888876654 44455 688888888888754 357778888888888888875544 7
Q ss_pred cCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCChhhhhcchh
Q 038037 607 VNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDA 686 (798)
Q Consensus 607 ~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~ 686 (798)
..+++|++|++++|++++..+ +..+++|+.|++++|++.++.+ +..+++|+.|++++|++++..| +.
T Consensus 262 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~L~~n~l~~~~~---~~---- 328 (466)
T 1o6v_A 262 SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP----ISNLKNLTYLTLYFNNISDISP---VS---- 328 (466)
T ss_dssp TTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG----GGGCTTCSEEECCSSCCSCCGG---GG----
T ss_pred hcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh----hcCCCCCCEEECcCCcCCCchh---hc----
Confidence 778888888888888876544 7778888888888888877643 3567788888888888774332 11
Q ss_pred chhccccccccccCCCCCCCCccccchhccccceeeeccCcccccCCccCceeEEEcCCCcccccCchhhhcccCCCeEe
Q 038037 687 MKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLN 766 (798)
Q Consensus 687 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 766 (798)
..+.|+.|++++|+++++ ..+..+++|+.|+
T Consensus 329 -----------------------------------------------~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 359 (466)
T 1o6v_A 329 -----------------------------------------------SLTKLQRLFFYNNKVSDV--SSLANLTNINWLS 359 (466)
T ss_dssp -----------------------------------------------GCTTCCEEECCSSCCCCC--GGGTTCTTCCEEE
T ss_pred -----------------------------------------------cCccCCEeECCCCccCCc--hhhccCCCCCEEe
Confidence 135677888888888765 3677888888888
Q ss_pred CcCCccccCCCccccCCCCCCeEeCCCCcCCC
Q 038037 767 LDNNNLQGHIPSCLGNLTNLESLDLSNNRFFF 798 (798)
Q Consensus 767 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 798 (798)
+++|++++..| +..+++|+.|++++|+++|
T Consensus 360 l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 360 AGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 88888887766 7778888888888887764
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=4e-33 Score=307.25 Aligned_cols=108 Identities=30% Similarity=0.420 Sum_probs=68.9
Q ss_pred ccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCC
Q 038037 533 ICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKL 612 (798)
Q Consensus 533 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L 612 (798)
+..+++|++|++++|++++..+ +..++ +|++|++++|++++..| +..+++|++|++++|++++. ..+..+++|
T Consensus 283 ~~~l~~L~~L~L~~n~l~~~~~--~~~l~-~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L 355 (466)
T 1o6v_A 283 LAGLTALTNLELNENQLEDISP--ISNLK-NLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNI 355 (466)
T ss_dssp GTTCTTCSEEECCSSCCSCCGG--GGGCT-TCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred ccCCCccCeEEcCCCcccCchh--hcCCC-CCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCC
Confidence 4455666666666666665433 44454 56666666666665544 55666777777777776644 356667777
Q ss_pred cEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccc
Q 038037 613 EFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGI 649 (798)
Q Consensus 613 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~ 649 (798)
++|++++|++++..| +..+++|+.|++++|++++.
T Consensus 356 ~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 356 NWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp CEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred CEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 777777777766555 66667777777777776664
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=5.3e-34 Score=311.12 Aligned_cols=367 Identities=20% Similarity=0.182 Sum_probs=237.4
Q ss_pred CCchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCEEecCCCcCCCcccccccC
Q 038037 165 TIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGN 244 (798)
Q Consensus 165 ~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 244 (798)
..+..++.+++|++|++++|.+++. + .+..+++|++|++++|.+++. + ++.+++|++|++++|.+++. + +..
T Consensus 33 ~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~ 104 (457)
T 3bz5_A 33 TDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTP 104 (457)
T ss_dssp TSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTT
T ss_pred ccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCC
Confidence 3444566677777777777777754 2 577777777777777777754 2 66677777777777777653 2 666
Q ss_pred CCCCCEEECcCCcCCCCCccccccCCCCceeecCCCCcceEecCCccccccCCccccCCCCCCEEEcCCCCccccCCCCc
Q 038037 245 LSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSI 324 (798)
Q Consensus 245 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~ 324 (798)
+++|++|++++|++.+. + ++.+++|++|++++|+++.+ .+..+++|++|++++|...+.+ .+
T Consensus 105 l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-------------~l~~l~~L~~L~l~~n~~~~~~--~~ 166 (457)
T 3bz5_A 105 LTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-------------DVSHNTQLTELDCHLNKKITKL--DV 166 (457)
T ss_dssp CTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-------------CCTTCTTCCEEECTTCSCCCCC--CC
T ss_pred CCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee-------------ccccCCcCCEEECCCCCccccc--cc
Confidence 77777777777777553 2 66667776666666655442 1345566666666666443333 24
Q ss_pred CCCCCCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCcccCccchHHHhhcCCCCCeEEcc
Q 038037 325 GNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLS 404 (798)
Q Consensus 325 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~ 404 (798)
..+++|++|++++|.+++. .+..+++|+.|++++|.+++.. +..++
T Consensus 167 ~~l~~L~~L~ls~n~l~~l---------------------~l~~l~~L~~L~l~~N~l~~~~-----l~~l~-------- 212 (457)
T 3bz5_A 167 TPQTQLTTLDCSFNKITEL---------------------DVSQNKLLNRLNCDTNNITKLD-----LNQNI-------- 212 (457)
T ss_dssp TTCTTCCEEECCSSCCCCC---------------------CCTTCTTCCEEECCSSCCSCCC-----CTTCT--------
T ss_pred ccCCcCCEEECCCCcccee---------------------ccccCCCCCEEECcCCcCCeec-----cccCC--------
Confidence 5556666666666655431 1233445555555555544431 23334
Q ss_pred cccccccccCCCCCCccCccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCcccccccCcccceeeCCCCcccc
Q 038037 405 SNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTR 484 (798)
Q Consensus 405 ~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~ 484 (798)
+|++|++++|+++.+| +..+++|+.|++++|++++..+. .++.|+.|++++|.+.
T Consensus 213 -----------------~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~~~-----~l~~L~~L~l~~n~L~- 267 (457)
T 3bz5_A 213 -----------------QLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVS-----TLSKLTTLHCIQTDLL- 267 (457)
T ss_dssp -----------------TCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCCCT-----TCTTCCEEECTTCCCS-
T ss_pred -----------------CCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcCHH-----HCCCCCEEeccCCCCC-
Confidence 4444444445555554 55667777777777777654322 4566666666665433
Q ss_pred ccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhcccccc
Q 038037 485 FDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDEL 564 (798)
Q Consensus 485 ~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L 564 (798)
.+++++ |.+.+.+| +..+++|++|++++|...+.+|.. .. .|
T Consensus 268 -----------~L~l~~---------------------n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~---~~-~L 309 (457)
T 3bz5_A 268 -----------EIDLTH---------------------NTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQ---AA-GI 309 (457)
T ss_dssp -----------CCCCTT---------------------CTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECT---TC-CC
T ss_pred -----------EEECCC---------------------CccCCccc--ccccccCCEEECCCCcccceeccC---CC-cc
Confidence 223333 33333444 456889999999999877666642 22 46
Q ss_pred ceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCc
Q 038037 565 AVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSN 644 (798)
Q Consensus 565 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N 644 (798)
+.|++++| ++|++|++++|++++. .+..+++|+.|++++|++++ ++.|..|++++|
T Consensus 310 ~~L~l~~~-------------~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n 365 (457)
T 3bz5_A 310 TELDLSQN-------------PKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNN 365 (457)
T ss_dssp SCCCCTTC-------------TTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGT
T ss_pred eEechhhc-------------ccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------ccccccccccCC
Confidence 66665554 6899999999999975 38899999999999999986 246677789999
Q ss_pred ccccccCCCCCcCCCCcccEEEccCCcCcCCCChhhhhcch
Q 038037 645 TFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWD 685 (798)
Q Consensus 645 ~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~ 685 (798)
.+.+. ..+..|..+++++|+++|.+|..++..+.
T Consensus 366 ~l~g~-------~~~~~l~~l~l~~N~l~g~ip~~~~~~~~ 399 (457)
T 3bz5_A 366 NFEAE-------GQTITMPKETLTNNSLTIAVSPDLLDQFG 399 (457)
T ss_dssp SEEEE-------EEEEECCCBCCBTTBEEEECCTTCBCTTS
T ss_pred cEEec-------ceeeecCccccccCcEEEEcChhHhcccC
Confidence 99876 24567888999999999999987654433
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.5e-32 Score=299.54 Aligned_cols=317 Identities=18% Similarity=0.211 Sum_probs=183.2
Q ss_pred cccccCCCCeEEcCCCCCCCCCCchhccCCCCCcEEEccCCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCCchH
Q 038037 64 SLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLA 143 (798)
Q Consensus 64 ~l~~~~~L~~L~L~~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~ 143 (798)
.+..+++|++|++++|.+.. +| .++.+++|++|++++|.+++ +| ++.+++|++|++++|.+.. ++
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~--~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~---------~~ 101 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITD--MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTN---------LD 101 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCC--CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC---------CC
T ss_pred ChhHcCCCCEEEccCCCccc--Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCce---------ee
Confidence 56677777777777777765 34 56777777777777777764 33 6677777777777776322 11
Q ss_pred HHHhcCCCCCEEEccCCccCCCCchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCC
Q 038037 144 NLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHS 223 (798)
Q Consensus 144 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 223 (798)
+..+++|++|++++|.+.+. + ++.+++|++|++++|.+++. .++.+++|++|++++|...+.. .+..+++
T Consensus 102 --~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~ 171 (457)
T 3bz5_A 102 --VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQ 171 (457)
T ss_dssp --CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTT
T ss_pred --cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCc
Confidence 45667777777777776653 2 56667777777777776653 2566667777777766433322 3556666
Q ss_pred CCEEecCCCcCCCcccccccCCCCCCEEECcCCcCCCCCccccccCCCCceeecCCCCcceEecCCccccccCCccccCC
Q 038037 224 LKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNF 303 (798)
Q Consensus 224 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l 303 (798)
|++|++++|.+++. | +..+++|++|++++|.+++. .+..+++|++|++++|+++.+ | +..+
T Consensus 172 L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-----------p--~~~l 232 (457)
T 3bz5_A 172 LTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-----------D--VTPL 232 (457)
T ss_dssp CCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-----------C--CTTC
T ss_pred CCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-----------C--cccc
Confidence 77777776666642 3 55666666666666666543 255566665555555554332 2 4455
Q ss_pred CCCCEEEcCCCCccccCCCCcCCCCCCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCccc
Q 038037 304 SSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYR 383 (798)
Q Consensus 304 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~ 383 (798)
++|+.|++++|.+.+.. ++.+++|+.|+++.|. |+.+++++|...
T Consensus 233 ~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~--------------------------------L~~L~l~~n~~~ 277 (457)
T 3bz5_A 233 TQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTD--------------------------------LLEIDLTHNTQL 277 (457)
T ss_dssp TTCSEEECCSSCCSCCC---CTTCTTCCEEECTTCC--------------------------------CSCCCCTTCTTC
T ss_pred CCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCCC--------------------------------CCEEECCCCccC
Confidence 66666666666664432 3345555555555443 344455555543
Q ss_pred CccchHHHhhcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCcc
Q 038037 384 GMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKW 463 (798)
Q Consensus 384 ~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~ 463 (798)
+..+ ...+++|+.|++++|... ..+....+.++.+. +.++++|+.|++++|++++. +
T Consensus 278 ~~~~----~~~l~~L~~L~Ls~n~~l--------------~~l~~~~~~L~~L~--l~~~~~L~~L~L~~N~l~~l-~-- 334 (457)
T 3bz5_A 278 IYFQ----AEGCRKIKELDVTHNTQL--------------YLLDCQAAGITELD--LSQNPKLVYLYLNNTELTEL-D-- 334 (457)
T ss_dssp CEEE----CTTCTTCCCCCCTTCTTC--------------CEEECTTCCCSCCC--CTTCTTCCEEECTTCCCSCC-C--
T ss_pred Cccc----ccccccCCEEECCCCccc--------------ceeccCCCcceEec--hhhcccCCEEECCCCccccc-c--
Confidence 3322 245566666666666321 11111122222221 33345666666666666653 2
Q ss_pred cccccCcccceeeCCCCcccc
Q 038037 464 LLDPSMQYLNALNLSHNLLTR 484 (798)
Q Consensus 464 ~~~~~l~~L~~L~ls~n~l~~ 484 (798)
+. .++.|+.|++++|+++.
T Consensus 335 l~--~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 335 VS--HNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp CT--TCTTCSEEECCSSCCCB
T ss_pred cc--cCCcCcEEECCCCCCCC
Confidence 22 55666666666666654
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.7e-33 Score=306.66 Aligned_cols=301 Identities=20% Similarity=0.169 Sum_probs=205.8
Q ss_pred cCccEEeeCCCCCCCcc-hhhhCCCCccEEECCCCcccCCCCcccccccCcccceeeCCCCccccccCCCCCCCCcEEec
Q 038037 421 QKFRYVGLRSCNLTEFP-NFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDF 499 (798)
Q Consensus 421 ~~L~~L~l~~~~l~~l~-~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l 499 (798)
+.++.|++++|+++.++ ..+..+++|++|++++|.+++..|..+. .+++|++|++++|+++.++...+
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~--------- 100 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFN--NLFNLRTLGLRSNRLKLIPLGVF--------- 100 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCSCCTTSS---------
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhh--CCccCCEEECCCCcCCccCcccc---------
Confidence 34555555555555553 4566667777777777776666565554 56667777776666665543211
Q ss_pred cCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccc
Q 038037 500 SSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIP 579 (798)
Q Consensus 500 ~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~ 579 (798)
...++++.+++++|.+.+..+..|..+++|++|++++|.+++..+..|..++ +|++|++++|++++..+
T Consensus 101 ----------~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 101 ----------TGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN-SLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp ----------TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCT-TCCEEEEESCCCSSCCH
T ss_pred ----------cCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCC-CCCEEECCCCcCcccCh
Confidence 1123344444444444555566677777777777777777776677777776 67777777777777666
Q ss_pred cccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCC
Q 038037 580 DTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGF 659 (798)
Q Consensus 580 ~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~ 659 (798)
..|..+++|+.|++++|.+.+..+..|..+++|++|++++|...+..|.......+|++|++++|.++++.+. .+..+
T Consensus 170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~l 247 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYL--AVRHL 247 (477)
T ss_dssp HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHH--HHTTC
T ss_pred hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHH--HhcCc
Confidence 6777777777777777777777666777777777777777776655555555556777777777777765322 23567
Q ss_pred CcccEEEccCCcCcCCCChhhhhcchhchhccccccccccCCCCCCCCccccchhccccceeeeccCcccccCCccCcee
Q 038037 660 SKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILT 739 (798)
Q Consensus 660 ~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 739 (798)
++|+.|++++|++++ ++...|. -.+.|+
T Consensus 248 ~~L~~L~Ls~n~l~~-~~~~~~~---------------------------------------------------~l~~L~ 275 (477)
T 2id5_A 248 VYLRFLNLSYNPIST-IEGSMLH---------------------------------------------------ELLRLQ 275 (477)
T ss_dssp TTCCEEECCSSCCCE-ECTTSCT---------------------------------------------------TCTTCC
T ss_pred cccCeeECCCCcCCc-cChhhcc---------------------------------------------------ccccCC
Confidence 777777777777763 2221111 135688
Q ss_pred EEEcCCCcccccCchhhhcccCCCeEeCcCCccccCCCccccCCCCCCeEeCCCCcCC
Q 038037 740 GIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFF 797 (798)
Q Consensus 740 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 797 (798)
.|+|++|+++++.|..|..+++|+.|+|++|+++++.+..|..+++|+.|+|++|+++
T Consensus 276 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 276 EIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp EEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred EEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 8888888888888888888888888888888888888888888888888888888875
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.9e-32 Score=300.19 Aligned_cols=112 Identities=22% Similarity=0.202 Sum_probs=90.6
Q ss_pred CCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEE
Q 038037 536 LNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFL 615 (798)
Q Consensus 536 l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L 615 (798)
..+|++|++++|.+++..+..+..++ +|++|++++|.+++..+..|.++++|++|++++|+++++.|..|.++++|++|
T Consensus 223 ~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 301 (477)
T 2id5_A 223 GLNLTSLSITHCNLTAVPYLAVRHLV-YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVL 301 (477)
T ss_dssp TCCCSEEEEESSCCCSCCHHHHTTCT-TCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEE
T ss_pred CccccEEECcCCcccccCHHHhcCcc-ccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEE
Confidence 34788899999988865556677776 68888888888887777788888888888888888888778888888888888
Q ss_pred eCCCCcCCccCCcccCCCCCCCEEEccCccccc
Q 038037 616 DLGNNQISDTFPSWLGTLPNLNVLILRSNTFYG 648 (798)
Q Consensus 616 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~ 648 (798)
+|++|+++++.+..|..+++|+.|+|++|++..
T Consensus 302 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 302 NVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp ECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred ECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 888888887777777888888888888888754
No 35
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3e-33 Score=290.42 Aligned_cols=281 Identities=32% Similarity=0.536 Sum_probs=173.8
Q ss_pred cccccccCcCCCCCCCCCCCCCCCCCCCce--eeeeEecCCC--CeEEEEEcCCCCccC--cccCcccccccCCCCeEEc
Q 038037 3 INRDLDAWKFDCRPKAASWKPEEGDVDCCS--WDGVHCDKNT--GHVIKLDLSNSCLFG--SINSSSSLFKLVHLEWLNL 76 (798)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~--w~~~~~~~~~--~~l~~L~l~~~~~~~--~~~~~~~l~~~~~L~~L~L 76 (798)
||+++.+ +. ..++|.. +.+||. |.||.|.... ++|++|+++++.+.+ .++. .+..+++|++|++
T Consensus 14 ~k~~~~~-~~----~l~~W~~---~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~--~l~~l~~L~~L~L 83 (313)
T 1ogq_A 14 IKKDLGN-PT----TLSSWLP---TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPS--SLANLPYLNFLYI 83 (313)
T ss_dssp HHHHTTC-CG----GGTTCCT---TSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCG--GGGGCTTCSEEEE
T ss_pred HHHhcCC-cc----cccCCCC---CCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccCh--hHhCCCCCCeeeC
Confidence 5566643 22 5789976 578998 9999998654 789999999999877 5554 7778888888888
Q ss_pred CC-CCCCCCCCchhccCCCCCcEEEccCCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCCchHHHHhcCCCCCEE
Q 038037 77 AF-NDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETL 155 (798)
Q Consensus 77 ~~-~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L 155 (798)
++ +.+... +|..++.+++|++|++++|.+++..|..+..+++|++|++++|.+ . ..++..+..+++|++|
T Consensus 84 ~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l-----~---~~~p~~~~~l~~L~~L 154 (313)
T 1ogq_A 84 GGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL-----S---GTLPPSISSLPNLVGI 154 (313)
T ss_dssp EEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEE-----E---SCCCGGGGGCTTCCEE
T ss_pred CCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCcc-----C---CcCChHHhcCCCCCeE
Confidence 84 666654 677777888888888888877777777777777777777777752 1 2334445556666666
Q ss_pred EccCCccCCCCchhccCCC-CCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCEEecCCCcC
Q 038037 156 DLGDASIRSTIPHNLANLS-SLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANIL 234 (798)
Q Consensus 156 ~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 234 (798)
++++|.+.+..|..+..++ .|++|++++|.+++..+..|..++ |++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 155 ~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 233 (313)
T 1ogq_A 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233 (313)
T ss_dssp ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred ECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCce
Confidence 6666665555555555554 555555555555555555555554 55555555555544455555555555555555555
Q ss_pred CCcccccccCCCCCCEEECcCCcCCCCCccccccCCCCceeecCCCCcceEecCCccccccCCccccCCCCCCEEEcCCC
Q 038037 235 SSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSC 314 (798)
Q Consensus 235 ~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n 314 (798)
++..+. +..+++|++|++++|++.+..|. .+..+++|++|++++|
T Consensus 234 ~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~----------------------------------~l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 234 AFDLGK-VGLSKNLNGLDLRNNRIYGTLPQ----------------------------------GLTQLKFLHSLNVSFN 278 (313)
T ss_dssp CCBGGG-CCCCTTCCEEECCSSCCEECCCG----------------------------------GGGGCTTCCEEECCSS
T ss_pred eeecCc-ccccCCCCEEECcCCcccCcCCh----------------------------------HHhcCcCCCEEECcCC
Confidence 433332 44444455555555544444444 4444555555555555
Q ss_pred CccccCCCCcCCCCCCcEEeccCcc
Q 038037 315 SFWGKVPHSIGNFTRLQLLYLTFNN 339 (798)
Q Consensus 315 ~~~~~~~~~~~~l~~L~~L~l~~n~ 339 (798)
.+.+.+|.. ..+++|+.+++++|+
T Consensus 279 ~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 279 NLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp EEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred cccccCCCC-ccccccChHHhcCCC
Confidence 554444443 455566666666655
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=4.1e-31 Score=279.96 Aligned_cols=308 Identities=23% Similarity=0.332 Sum_probs=224.0
Q ss_pred hhhcCCCCcEEeccCCcccCccchHHHhhcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcchhhhCCC
Q 038037 365 SLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQH 444 (798)
Q Consensus 365 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~ 444 (798)
.+..+++|++|+++++.+..+.. +..+++|++|++++|.++.++. ...+++|++|++++|.++.++ .+..++
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~~~~----~~~~~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~L~~n~i~~~~-~~~~l~ 110 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVASIQG----IEYLTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNKITDIS-ALQNLT 110 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCCCTT----GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCG-GGTTCT
T ss_pred cchhcccccEEEEeCCccccchh----hhhcCCccEEEccCCccccchh---hhcCCcCCEEEccCCcccCch-HHcCCC
Confidence 34556677777777776665532 3556666666666666555443 234455555555555555554 245555
Q ss_pred CccEEECCCCcccCCCCcccccccCcccceeeCCCCccccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecce
Q 038037 445 HLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNS 524 (798)
Q Consensus 445 ~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~ 524 (798)
+|++|++++|.+.+..+ +. .+++|+.|++++|...
T Consensus 111 ~L~~L~l~~n~i~~~~~--~~--~l~~L~~L~l~~n~~~----------------------------------------- 145 (347)
T 4fmz_A 111 NLRELYLNEDNISDISP--LA--NLTKMYSLNLGANHNL----------------------------------------- 145 (347)
T ss_dssp TCSEEECTTSCCCCCGG--GT--TCTTCCEEECTTCTTC-----------------------------------------
T ss_pred cCCEEECcCCcccCchh--hc--cCCceeEEECCCCCCc-----------------------------------------
Confidence 55555555555543222 11 3444444444444221
Q ss_pred eecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCc
Q 038037 525 LTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPR 604 (798)
Q Consensus 525 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~ 604 (798)
.. +..+..+++|++|++++|.+.+..+ +..++ +|++|++++|.+.+..+ +..+++|+.|++++|.+++..+
T Consensus 146 --~~-~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~-~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~- 216 (347)
T 4fmz_A 146 --SD-LSPLSNMTGLNYLTVTESKVKDVTP--IANLT-DLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP- 216 (347)
T ss_dssp --CC-CGGGTTCTTCCEEECCSSCCCCCGG--GGGCT-TCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-
T ss_pred --cc-ccchhhCCCCcEEEecCCCcCCchh--hccCC-CCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch-
Confidence 11 2337788999999999999986544 66776 79999999999986544 8889999999999999986544
Q ss_pred cccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCChhhhhcc
Q 038037 605 SLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCW 684 (798)
Q Consensus 605 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~ 684 (798)
+..+++|++|++++|++++..+ +..+++|++|++++|.++++. .+..+++|+.|++++|++++ +|. +.
T Consensus 217 -~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~----~~~~l~~L~~L~l~~n~l~~-~~~--~~-- 284 (347)
T 4fmz_A 217 -VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDIN----AVKDLTKLKMLNVGSNQISD-ISV--LN-- 284 (347)
T ss_dssp -GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG----GGTTCTTCCEEECCSSCCCC-CGG--GG--
T ss_pred -hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCCh----hHhcCCCcCEEEccCCccCC-Chh--hc--
Confidence 8889999999999999986654 889999999999999998762 34678999999999999874 221 10
Q ss_pred hhchhccccccccccCCCCCCCCccccchhccccceeeeccCcccccCCccCceeEEEcCCCcccccCchhhhcccCCCe
Q 038037 685 DAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQV 764 (798)
Q Consensus 685 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 764 (798)
.++.|+.|++++|++++..+..+..+++|++
T Consensus 285 -------------------------------------------------~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 315 (347)
T 4fmz_A 285 -------------------------------------------------NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315 (347)
T ss_dssp -------------------------------------------------GCTTCSEEECCSSCCCGGGHHHHHTCTTCSE
T ss_pred -------------------------------------------------CCCCCCEEECcCCcCCCcChhHhhccccCCE
Confidence 1467999999999999999999999999999
Q ss_pred EeCcCCccccCCCccccCCCCCCeEeCCCCcCC
Q 038037 765 LNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFF 797 (798)
Q Consensus 765 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 797 (798)
|++++|++++..| +..+++|+.|++++|+|+
T Consensus 316 L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 316 LFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EEccCCccccccC--hhhhhccceeehhhhccc
Confidence 9999999998877 889999999999999986
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.98 E-value=3.9e-31 Score=284.63 Aligned_cols=155 Identities=22% Similarity=0.244 Sum_probs=75.6
Q ss_pred ccCCCCeEEcCCCCCCCCCCch-hccCCCCCcEEEccCCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCCchHHH
Q 038037 67 KLVHLEWLNLAFNDFNSSEIPP-EIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANL 145 (798)
Q Consensus 67 ~~~~L~~L~L~~~~~~~~~l~~-~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~ 145 (798)
.++++++|+++++.+.. +|. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 43 ~l~~l~~l~l~~~~l~~--l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~---------------- 104 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRK--LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA---------------- 104 (390)
T ss_dssp GGCCCSEEEEESCEESE--ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC----------------
T ss_pred ccCCceEEEecCCchhh--CChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC----------------
Confidence 34566666666665544 232 34556666666666666654444455555555555555554
Q ss_pred HhcCCCCCEEEccCCccCCCCchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCC
Q 038037 146 VEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLK 225 (798)
Q Consensus 146 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 225 (798)
+.+..+..|+.+++|++|++++|.++...+..|..+++|++|++++|.+.+..+..+..+++|+
T Consensus 105 ----------------l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 168 (390)
T 3o6n_A 105 ----------------IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 168 (390)
T ss_dssp ----------------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCC
T ss_pred ----------------CCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCC
Confidence 3333333444444444444444444433333344444444444444444444444444444444
Q ss_pred EEecCCCcCCCcccccccCCCCCCEEECcCCcC
Q 038037 226 ELDLSANILSSELPTSIGNLSSLKKLDLSQNRF 258 (798)
Q Consensus 226 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i 258 (798)
+|++++|.+++. .+..+++|++|++++|.+
T Consensus 169 ~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 169 NLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 198 (390)
T ss_dssp EEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred EEECCCCcCCcc---ccccccccceeecccccc
Confidence 444444444432 123334444444444443
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=1.2e-30 Score=280.85 Aligned_cols=310 Identities=21% Similarity=0.210 Sum_probs=165.0
Q ss_pred CCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCEEecCCCcCCCcccccccCCCCCCEEE
Q 038037 173 LSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLD 252 (798)
Q Consensus 173 l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 252 (798)
+++++.++++++.++.+.+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..|..+++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 35566666666666555555555566666666666666555445555555555555555555555555555555555555
Q ss_pred CcCCcCCCCCccccccCCCCceeecCCCCcceEecCCccccccCCccccCCCCCCEEEcCCCCccccCCCCcCCCCCCcE
Q 038037 253 LSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQL 332 (798)
Q Consensus 253 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 332 (798)
+++|.+....+..|..+++| ++|++++|.+.+..+..+..+++|++
T Consensus 124 L~~n~l~~l~~~~~~~l~~L----------------------------------~~L~L~~n~l~~~~~~~~~~l~~L~~ 169 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKL----------------------------------TTLSMSNNNLERIEDDTFQATTSLQN 169 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTC----------------------------------CEEECCSSCCCBCCTTTTSSCTTCCE
T ss_pred CCCCccCcCCHHHhcCCCCC----------------------------------cEEECCCCccCccChhhccCCCCCCE
Confidence 55555543333334444444 44444444444444444555555555
Q ss_pred EeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCcccCccchHHHhhcCCCCCeEEcccccccccc
Q 038037 333 LYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLT 412 (798)
Q Consensus 333 L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~ 412 (798)
|++++|.+++. .+..+++|+.+++++|.+... ...++|+.|++++|.+..++
T Consensus 170 L~l~~n~l~~~---------------------~~~~l~~L~~L~l~~n~l~~~-------~~~~~L~~L~l~~n~l~~~~ 221 (390)
T 3o6n_A 170 LQLSSNRLTHV---------------------DLSLIPSLFHANVSYNLLSTL-------AIPIAVEELDASHNSINVVR 221 (390)
T ss_dssp EECCSSCCSBC---------------------CGGGCTTCSEEECCSSCCSEE-------ECCSSCSEEECCSSCCCEEE
T ss_pred EECCCCcCCcc---------------------ccccccccceeeccccccccc-------CCCCcceEEECCCCeeeecc
Confidence 55555555432 123345556666666655433 22345566666665554443
Q ss_pred cCCCCCCccCccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCcccccccCcccceeeCCCCccccccCCCCCC
Q 038037 413 KATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVL 492 (798)
Q Consensus 413 ~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~ 492 (798)
.. ..++|+.|++++|.++..+ ++..+++|++|++++|.+.+..
T Consensus 222 ~~----~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~-------------------------------- 264 (390)
T 3o6n_A 222 GP----VNVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIM-------------------------------- 264 (390)
T ss_dssp CC----CCSSCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCEEE--------------------------------
T ss_pred cc----ccccccEEECCCCCCcccH-HHcCCCCccEEECCCCcCCCcC--------------------------------
Confidence 21 1234444445444444432 3444455555555555444333
Q ss_pred CCcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCC
Q 038037 493 PGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGN 572 (798)
Q Consensus 493 ~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n 572 (798)
|..|..+++|++|++++|++++. +..+..++ +|++|++++|
T Consensus 265 -------------------------------------~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~-~L~~L~L~~n 305 (390)
T 3o6n_A 265 -------------------------------------YHPFVKMQRLERLYISNNRLVAL-NLYGQPIP-TLKVLDLSHN 305 (390)
T ss_dssp -------------------------------------SGGGTTCSSCCEEECCSSCCCEE-ECSSSCCT-TCCEEECCSS
T ss_pred -------------------------------------hhHccccccCCEEECCCCcCccc-CcccCCCC-CCCEEECCCC
Confidence 33444555566666666655532 33333344 4666666666
Q ss_pred ccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCc
Q 038037 573 NFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISD 624 (798)
Q Consensus 573 ~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~ 624 (798)
++++ .|..+..+++|++|++++|.++.. + +..+++|++|++++|++.+
T Consensus 306 ~l~~-~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 306 HLLH-VERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp CCCC-CGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred ccee-cCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccc
Confidence 6653 344455666777777777776643 2 4556677777777777654
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=4.6e-30 Score=271.86 Aligned_cols=308 Identities=25% Similarity=0.329 Sum_probs=171.2
Q ss_pred cccccCCCCeEEcCCCCCCCCCCchhccCCCCCcEEEccCCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCCchH
Q 038037 64 SLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLA 143 (798)
Q Consensus 64 ~l~~~~~L~~L~L~~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~ 143 (798)
.+..+++|++|+++++.+.. ++ .+..+++|++|++++|.++ .++. +..+++|++|++++|.+.. +
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~--~~-~~~~~~~L~~L~l~~n~i~-~~~~-~~~l~~L~~L~L~~n~i~~---------~- 103 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVAS--IQ-GIEYLTNLEYLNLNGNQIT-DISP-LSNLVKLTNLYIGTNKITD---------I- 103 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCC--CT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCC---------C-
T ss_pred cchhcccccEEEEeCCcccc--ch-hhhhcCCccEEEccCCccc-cchh-hhcCCcCCEEEccCCcccC---------c-
Confidence 34456666666666665544 22 2555666666666666665 3333 5566666666666665221 1
Q ss_pred HHHhcCCCCCEEEccCCccCCCCchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCC
Q 038037 144 NLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHS 223 (798)
Q Consensus 144 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 223 (798)
+.+..+++|++|++++|.+.+..+ +..+++|++|++++|..... ...+..+++|++|++++|.+.+..+ +..+++
T Consensus 104 ~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~ 178 (347)
T 4fmz_A 104 SALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTP--IANLTD 178 (347)
T ss_dssp GGGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGG--GGGCTT
T ss_pred hHHcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCchh--hccCCC
Confidence 235566666666666666554322 55666666666666643322 2235666666666666666654332 556666
Q ss_pred CCEEecCCCcCCCcccccccCCCCCCEEECcCCcCCCCCccccccCCCCceeecCCCCcceEecCCccccccCCccccCC
Q 038037 224 LKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNF 303 (798)
Q Consensus 224 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l 303 (798)
|++|++++|.+.+..+ +..+++|+.|++++|.+....+ +..+++|++|++++|+++.+ + .+..+
T Consensus 179 L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~-----------~-~~~~l 242 (347)
T 4fmz_A 179 LYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDL-----------S-PLANL 242 (347)
T ss_dssp CSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-----------G-GGTTC
T ss_pred CCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCC-----------c-chhcC
Confidence 6666666666654322 5556666666666666644333 55566666666555554432 1 14556
Q ss_pred CCCCEEEcCCCCccccCCCCcCCCCCCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCccc
Q 038037 304 SSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYR 383 (798)
Q Consensus 304 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~ 383 (798)
++|++|++++|.+.+. ..+..+++|++|++++|.+++. . .+..+++|+.|++++|.+.
T Consensus 243 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~------------------~~~~l~~L~~L~L~~n~l~ 300 (347)
T 4fmz_A 243 SQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--S------------------VLNNLSQLNSLFLNNNQLG 300 (347)
T ss_dssp TTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--G------------------GGGGCTTCSEEECCSSCCC
T ss_pred CCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--h------------------hhcCCCCCCEEECcCCcCC
Confidence 6666666666665442 3455666666666666665542 1 3455566666666666665
Q ss_pred CccchHHHhhcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCC
Q 038037 384 GMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLT 434 (798)
Q Consensus 384 ~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~ 434 (798)
...+. .+..+++|+.|++++|+++.+.. ...+++|++|++++|.++
T Consensus 301 ~~~~~--~l~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 301 NEDME--VIGGLTNLTTLFLSQNHITDIRP---LASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGGHH--HHHTCTTCSEEECCSSSCCCCGG---GGGCTTCSEESSSCC---
T ss_pred CcChh--HhhccccCCEEEccCCccccccC---hhhhhccceeehhhhccc
Confidence 44332 24556666666666666555443 234556666666666554
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=7.9e-30 Score=289.55 Aligned_cols=177 Identities=21% Similarity=0.191 Sum_probs=87.7
Q ss_pred ccCCCCeEEcCCCCCCCCCCchhccCCCCCcEEEccCCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCCchHHHH
Q 038037 67 KLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLV 146 (798)
Q Consensus 67 ~~~~L~~L~L~~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~ 146 (798)
.+.+++.++++++.+... .+..+..+++|++|+|++|.+.+..|..|..+++|++|++++|.
T Consensus 49 ~l~~l~~l~l~~~~l~~l-p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~----------------- 110 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKL-PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA----------------- 110 (597)
T ss_dssp GGCCCSEEEESSCEESEE-CTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-----------------
T ss_pred cCCCceEEEeeCCCCCCc-CHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-----------------
Confidence 345666666666655542 22334556666666666666654445555556666666665554
Q ss_pred hcCCCCCEEEccCCccCCCCchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCE
Q 038037 147 EKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKE 226 (798)
Q Consensus 147 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 226 (798)
+.+..+..|+.+++|++|++++|.+++.++..|+.+++|++|++++|.+.+..+..|..+++|++
T Consensus 111 ---------------l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 175 (597)
T 3oja_B 111 ---------------IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQN 175 (597)
T ss_dssp ---------------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCE
T ss_pred ---------------CCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcE
Confidence 33333444444444555555554444444444444455555555555544444444444555555
Q ss_pred EecCCCcCCCcccccccCCCCCCEEECcCCcCCCCCccccccCCCCceeecCCCCcce
Q 038037 227 LDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFE 284 (798)
Q Consensus 227 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 284 (798)
|++++|.+++.. +..+++|+.|++++|.+.+ +...++|++|++++|.+..
T Consensus 176 L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~ 225 (597)
T 3oja_B 176 LQLSSNRLTHVD---LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINV 225 (597)
T ss_dssp EECTTSCCSBCC---GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCE
T ss_pred EECcCCCCCCcC---hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCcccc
Confidence 555555444321 2334445555555544421 2223344444444444433
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=1.4e-29 Score=287.61 Aligned_cols=310 Identities=21% Similarity=0.210 Sum_probs=162.9
Q ss_pred CCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCEEecCCCcCCCcccccccCCCCCCEEE
Q 038037 173 LSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLD 252 (798)
Q Consensus 173 l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 252 (798)
+++++.++++++.+..+++..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..|+.+++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 34555666666655555555555555555555555555554445555555555555555555554444555555555555
Q ss_pred CcCCcCCCCCccccccCCCCceeecCCCCcceEecCCccccccCCccccCCCCCCEEEcCCCCccccCCCCcCCCCCCcE
Q 038037 253 LSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQL 332 (798)
Q Consensus 253 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 332 (798)
+++|.+....+..|..+ ++|++|++++|.+.+..|..|..+++|++
T Consensus 130 L~~n~l~~l~~~~~~~l----------------------------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 175 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNT----------------------------------PKLTTLSMSNNNLERIEDDTFQATTSLQN 175 (597)
T ss_dssp CCSSCCCCCCTTTTTTC----------------------------------TTCCEEECCSSCCCBCCTTTTTTCTTCCE
T ss_pred eeCCCCCCCCHHHhccC----------------------------------CCCCEEEeeCCcCCCCChhhhhcCCcCcE
Confidence 55555543333334444 44444455555444444455555555556
Q ss_pred EeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCcccCccchHHHhhcCCCCCeEEcccccccccc
Q 038037 333 LYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLT 412 (798)
Q Consensus 333 L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~ 412 (798)
|++++|.+++. .+..+++|+.|++++|.+... ...++|+.|++++|.+..++
T Consensus 176 L~L~~N~l~~~---------------------~~~~l~~L~~L~l~~n~l~~l-------~~~~~L~~L~ls~n~l~~~~ 227 (597)
T 3oja_B 176 LQLSSNRLTHV---------------------DLSLIPSLFHANVSYNLLSTL-------AIPIAVEELDASHNSINVVR 227 (597)
T ss_dssp EECTTSCCSBC---------------------CGGGCTTCSEEECCSSCCSEE-------ECCTTCSEEECCSSCCCEEE
T ss_pred EECcCCCCCCc---------------------ChhhhhhhhhhhcccCccccc-------cCCchhheeeccCCcccccc
Confidence 66555555432 123345556666666655432 22345566666666554443
Q ss_pred cCCCCCCccCccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCcccccccCcccceeeCCCCccccccCCCCCC
Q 038037 413 KATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVL 492 (798)
Q Consensus 413 ~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~ 492 (798)
... .++|+.|++++|.++.. .++..+++|+.|++++|.+.+..
T Consensus 228 ~~~----~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~-------------------------------- 270 (597)
T 3oja_B 228 GPV----NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIM-------------------------------- 270 (597)
T ss_dssp CSC----CSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEE--------------------------------
T ss_pred ccc----CCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCC--------------------------------
Confidence 221 13444444444444442 23444455555555555444333
Q ss_pred CCcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCC
Q 038037 493 PGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGN 572 (798)
Q Consensus 493 ~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n 572 (798)
|..|..+++|++|+|++|.+++. |..+..++ +|++|++++|
T Consensus 271 -------------------------------------~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~-~L~~L~Ls~N 311 (597)
T 3oja_B 271 -------------------------------------YHPFVKMQRLERLYISNNRLVAL-NLYGQPIP-TLKVLDLSHN 311 (597)
T ss_dssp -------------------------------------SGGGTTCSSCCEEECTTSCCCEE-ECSSSCCT-TCCEEECCSS
T ss_pred -------------------------------------HHHhcCccCCCEEECCCCCCCCC-CcccccCC-CCcEEECCCC
Confidence 34444555555555555555532 33333344 4666666666
Q ss_pred ccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCc
Q 038037 573 NFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISD 624 (798)
Q Consensus 573 ~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~ 624 (798)
.+++ +|..+..+++|++|++++|.+++.. +..+++|+.|++++|.+.+
T Consensus 312 ~l~~-i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 312 HLLH-VERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp CCCC-CGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEH
T ss_pred CCCc-cCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCC
Confidence 6653 3445556666666666666666432 4556667777777776654
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=1.5e-30 Score=270.06 Aligned_cols=214 Identities=29% Similarity=0.422 Sum_probs=172.6
Q ss_pred eeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCC
Q 038037 524 SLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIP 603 (798)
Q Consensus 524 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~ 603 (798)
.+.+.+|..|..+++|++|++++|.+++..|..+..++ +|++|++++|.+++..|..|..+++|++|++++|++++.+|
T Consensus 88 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 166 (313)
T 1ogq_A 88 NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK-TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166 (313)
T ss_dssp TEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT-TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECC
T ss_pred cccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC-CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCC
Confidence 33445667777788888888888888877888888777 68888888888887788888888888888888888887788
Q ss_pred ccccCCC-CCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCChhhhh
Q 038037 604 RSLVNCS-KLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFL 682 (798)
Q Consensus 604 ~~~~~l~-~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~ 682 (798)
..+..++ +|++|++++|++++..|..|..++ |+.|++++|.+++..+.. +..+++|+.|++++|++++.+|. +
T Consensus 167 ~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~--~~~l~~L~~L~L~~N~l~~~~~~--~- 240 (313)
T 1ogq_A 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVL--FGSDKNTQKIHLAKNSLAFDLGK--V- 240 (313)
T ss_dssp GGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGG--CCTTSCCSEEECCSSEECCBGGG--C-
T ss_pred HHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHH--HhcCCCCCEEECCCCceeeecCc--c-
Confidence 8888887 888888888888878888888876 888888888888765543 36788888888888888743332 0
Q ss_pred cchhchhccccccccccCCCCCCCCccccchhccccceeeeccCcccccCCccCceeEEEcCCCcccccCchhhhcccCC
Q 038037 683 CWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGL 762 (798)
Q Consensus 683 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L 762 (798)
..++.|++|+|++|+|++.+|..|..+++|
T Consensus 241 --------------------------------------------------~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 270 (313)
T 1ogq_A 241 --------------------------------------------------GLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270 (313)
T ss_dssp --------------------------------------------------CCCTTCCEEECCSSCCEECCCGGGGGCTTC
T ss_pred --------------------------------------------------cccCCCCEEECcCCcccCcCChHHhcCcCC
Confidence 014678889999999998889999999999
Q ss_pred CeEeCcCCccccCCCccccCCCCCCeEeCCCCc
Q 038037 763 QVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNR 795 (798)
Q Consensus 763 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 795 (798)
+.|+|++|++++.+|.. ..+++|+.|++++|+
T Consensus 271 ~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 271 HSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred CEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 99999999999888876 888999999999997
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=4.6e-29 Score=261.84 Aligned_cols=288 Identities=22% Similarity=0.255 Sum_probs=154.6
Q ss_pred CCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcch-hhhCCCCccEEECCCCcccCCCCcccccccCccccee
Q 038037 397 NLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPN-FLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNAL 475 (798)
Q Consensus 397 ~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L 475 (798)
+++.++++++.++.++... .+.+++|++++|+++.++. .+..+++|++|++++|.+++..|..+. .+++|++|
T Consensus 32 ~l~~l~~~~~~l~~lp~~~----~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L 105 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL----PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA--PLVKLERL 105 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC----CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTT--TCTTCCEE
T ss_pred CCeEEEecCCCccccCccC----CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhc--CCCCCCEE
Confidence 4555666665555444321 2466777777777776664 577788888888888888877676665 67778888
Q ss_pred eCCCCccccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccCh
Q 038037 476 NLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQ 555 (798)
Q Consensus 476 ~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~ 555 (798)
++++|+++.++... . ++|++|++++|.+++..+.
T Consensus 106 ~Ls~n~l~~l~~~~----------------------~------------------------~~L~~L~l~~n~l~~~~~~ 139 (330)
T 1xku_A 106 YLSKNQLKELPEKM----------------------P------------------------KTLQELRVHENEITKVRKS 139 (330)
T ss_dssp ECCSSCCSBCCSSC----------------------C------------------------TTCCEEECCSSCCCBBCHH
T ss_pred ECCCCcCCccChhh----------------------c------------------------ccccEEECCCCcccccCHh
Confidence 88777776543211 1 3444444444444444333
Q ss_pred hhhccccccceeecCCCcccc--ccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCC
Q 038037 556 CLGNFSDELAVLDLQGNNFFG--TIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTL 633 (798)
Q Consensus 556 ~~~~~~~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l 633 (798)
.+..++ +|++|++++|.+.. ..+..|.++++|++|++++|.++. +|..+. ++|++|++++|++++..|..|..+
T Consensus 140 ~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l 215 (330)
T 1xku_A 140 VFNGLN-QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGL 215 (330)
T ss_dssp HHTTCT-TCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTC
T ss_pred HhcCCc-cccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCC
Confidence 444443 34444444444432 334445555555555555555542 222221 455555555555554444555555
Q ss_pred CCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCChhhhhcchhchhccccccccccCCCCCCCCccccch
Q 038037 634 PNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLI 713 (798)
Q Consensus 634 ~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (798)
++|+.|++++|.++++.+..+ ..+++|+.|++++|+++ .+|....
T Consensus 216 ~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~-~lp~~l~-------------------------------- 260 (330)
T 1xku_A 216 NNLAKLGLSFNSISAVDNGSL--ANTPHLRELHLNNNKLV-KVPGGLA-------------------------------- 260 (330)
T ss_dssp TTCCEEECCSSCCCEECTTTG--GGSTTCCEEECCSSCCS-SCCTTTT--------------------------------
T ss_pred CCCCEEECCCCcCceeChhhc--cCCCCCCEEECCCCcCc-cCChhhc--------------------------------
Confidence 555555555555554433222 34455555555555554 3332100
Q ss_pred hccccceeeeccCcccccCCccCceeEEEcCCCcccccCchhhhc------ccCCCeEeCcCCcccc--CCCccccCCCC
Q 038037 714 STYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIAN------LKGLQVLNLDNNNLQG--HIPSCLGNLTN 785 (798)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~------l~~L~~L~Ls~N~l~~--~~p~~~~~l~~ 785 (798)
-.+.|+.|++++|+|+++.+..|.. .+.|+.|++++|.+.. +.|..|..+++
T Consensus 261 --------------------~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~ 320 (330)
T 1xku_A 261 --------------------DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV 320 (330)
T ss_dssp --------------------TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCC
T ss_pred --------------------cCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccc
Confidence 0234555555555555554444432 2566667777776643 55667777777
Q ss_pred CCeEeCCCCc
Q 038037 786 LESLDLSNNR 795 (798)
Q Consensus 786 L~~L~Ls~N~ 795 (798)
++.++|++|+
T Consensus 321 l~~l~L~~N~ 330 (330)
T 1xku_A 321 RAAVQLGNYK 330 (330)
T ss_dssp GGGEEC----
T ss_pred eeEEEecccC
Confidence 7777777764
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=5.2e-29 Score=261.57 Aligned_cols=241 Identities=23% Similarity=0.278 Sum_probs=153.6
Q ss_pred CCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcc-hhhhCCCCccEEECCCCcccCCCCcccccccCccccee
Q 038037 397 NLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFP-NFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNAL 475 (798)
Q Consensus 397 ~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~-~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L 475 (798)
+++.++++++.++.++... .+.+++|++++|.++.++ ..+..+++|++|++++|.+++..|..+. .+++|++|
T Consensus 34 ~l~~l~~~~~~l~~ip~~~----~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L 107 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI----SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFS--PLRKLQKL 107 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC----CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGST--TCTTCCEE
T ss_pred cCCEEECCCCCccccCCCC----CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhh--CcCCCCEE
Confidence 3455555555554444322 245666666666666554 3577778888888888887766666655 67777777
Q ss_pred eCCCCccccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCccccc--cc
Q 038037 476 NLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSG--LL 553 (798)
Q Consensus 476 ~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~--~~ 553 (798)
++++|+++.++.... +.++.+++++|.+.+..+..|..+++|++|++++|.++. ..
T Consensus 108 ~L~~n~l~~l~~~~~----------------------~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 165 (332)
T 2ft3_A 108 YISKNHLVEIPPNLP----------------------SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFE 165 (332)
T ss_dssp ECCSSCCCSCCSSCC----------------------TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSC
T ss_pred ECCCCcCCccCcccc----------------------ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCC
Confidence 777777765543221 334444444444554555567777777777777777753 45
Q ss_pred ChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCC
Q 038037 554 PQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTL 633 (798)
Q Consensus 554 ~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l 633 (798)
+..+..+ +|++|++++|+++++ |..+. ++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+
T Consensus 166 ~~~~~~l--~L~~L~l~~n~l~~l-~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l 240 (332)
T 2ft3_A 166 PGAFDGL--KLNYLRISEAKLTGI-PKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL 240 (332)
T ss_dssp TTSSCSC--CCSCCBCCSSBCSSC-CSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGC
T ss_pred cccccCC--ccCEEECcCCCCCcc-Ccccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCC
Confidence 5555555 477777777777653 33322 567777777777776666677777777777777777776666667777
Q ss_pred CCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCc
Q 038037 634 PNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFT 673 (798)
Q Consensus 634 ~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~ 673 (798)
++|++|++++|+++.+.. .+..+++|+.|++++|+++
T Consensus 241 ~~L~~L~L~~N~l~~lp~---~l~~l~~L~~L~l~~N~l~ 277 (332)
T 2ft3_A 241 PTLRELHLDNNKLSRVPA---GLPDLKLLQVVYLHTNNIT 277 (332)
T ss_dssp TTCCEEECCSSCCCBCCT---TGGGCTTCCEEECCSSCCC
T ss_pred CCCCEEECCCCcCeecCh---hhhcCccCCEEECCCCCCC
Confidence 777777777777765422 2355667777777777766
No 45
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=9.9e-32 Score=296.82 Aligned_cols=389 Identities=21% Similarity=0.153 Sum_probs=219.3
Q ss_pred CCCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCcccCcc--chHHHhhcCCCCCeEEccc
Q 038037 328 TRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMI--ELDFLLTSLKNLEALVLSS 405 (798)
Q Consensus 328 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~~l~~L~~L~l~~ 405 (798)
++|++|++++|.+++..... .+..+++|++|++++|.+.... .....+..+++|++|++++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~-----------------~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 65 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAE-----------------LLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRS 65 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHH-----------------HHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTT
T ss_pred ccceehhhhhcccCchhHHH-----------------HHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCC
Confidence 56788888888877543321 3667788889999988876432 2222467788899999998
Q ss_pred ccccccccCCCCCCcc----CccEEeeCCCCCC-----CcchhhhCCCCccEEECCCCcccCCCCccccc---ccCcccc
Q 038037 406 NRLSLLTKATSNTTSQ----KFRYVGLRSCNLT-----EFPNFLKNQHHLVILDLSANRIHGKIPKWLLD---PSMQYLN 473 (798)
Q Consensus 406 n~i~~~~~~~~~~~~~----~L~~L~l~~~~l~-----~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~---~~l~~L~ 473 (798)
|.++............ +|++|++++|.++ .++..+..+++|++|++++|.+++..+..+.. ...++|+
T Consensus 66 n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~ 145 (461)
T 1z7x_W 66 NELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLE 145 (461)
T ss_dssp CCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCC
T ss_pred CcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcce
Confidence 8776533221111122 6888888888886 35677888888888888888876543333221 1234577
Q ss_pred eeeCCCCccccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecccCcccc-----CCCCCCEEEeeCcc
Q 038037 474 ALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWIC-----NLNTLKNLVLSHNS 548 (798)
Q Consensus 474 ~L~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~-----~l~~L~~L~Ls~n~ 548 (798)
+|++++|+++........ ......+.++.+++++|.+....+..+. ..++|++|++++|.
T Consensus 146 ~L~L~~n~l~~~~~~~l~---------------~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 210 (461)
T 1z7x_W 146 KLQLEYCSLSAASCEPLA---------------SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG 210 (461)
T ss_dssp EEECTTSCCBGGGHHHHH---------------HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC
T ss_pred EEECCCCCCCHHHHHHHH---------------HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCC
Confidence 777777766542210000 0000012333333333433332222221 24466666776666
Q ss_pred cccc----cChhhhccccccceeecCCCcccccc-----ccccccCCCccEEEcCCCccccc----CCccccCCCCCcEE
Q 038037 549 LSGL----LPQCLGNFSDELAVLDLQGNNFFGTI-----PDTFIKESRLGVIDLSHNLFQGR----IPRSLVNCSKLEFL 615 (798)
Q Consensus 549 i~~~----~~~~~~~~~~~L~~L~L~~n~i~~~~-----~~~~~~l~~L~~L~Ls~N~i~~~----~~~~~~~l~~L~~L 615 (798)
+++. ++..+..++ +|++|++++|.++... +..+..+++|++|++++|.++.. ++..+..+++|++|
T Consensus 211 l~~~~~~~l~~~l~~~~-~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 289 (461)
T 1z7x_W 211 VTSDNCRDLCGIVASKA-SLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKEL 289 (461)
T ss_dssp CBTTHHHHHHHHHHHCT-TCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEE
T ss_pred CcHHHHHHHHHHHHhCC-CccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceE
Confidence 6643 244444444 5666666666665432 22223456666666666666643 34455556666666
Q ss_pred eCCCCcCCccCCcccC-----CCCCCCEEEccCcccccccCCC--CCcCCCCcccEEEccCCcCcCCCChhhhhcchhch
Q 038037 616 DLGNNQISDTFPSWLG-----TLPNLNVLILRSNTFYGIIKEP--RTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMK 688 (798)
Q Consensus 616 ~L~~N~i~~~~~~~~~-----~l~~L~~L~L~~N~l~~~~~~~--~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~ 688 (798)
++++|++.+..+..+. ..++|++|++++|.+++..... ..+..+++|+.|++++|++++..+.....
T Consensus 290 ~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~------ 363 (461)
T 1z7x_W 290 SLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ------ 363 (461)
T ss_dssp ECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHH------
T ss_pred ECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHH------
Confidence 6666666543222222 2246666666666665431100 01123466666666666655211111000
Q ss_pred hccccccccccCCCCCCCCccccchhccccceeeeccCcccccCCccCceeEEEcCCCcccc----cCchhhhcccCCCe
Q 038037 689 IVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDG----VIPTSIANLKGLQV 764 (798)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~ 764 (798)
......+.|+.|++++|++++ .+|..+..+++|++
T Consensus 364 -----------------------------------------~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~ 402 (461)
T 1z7x_W 364 -----------------------------------------GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE 402 (461)
T ss_dssp -----------------------------------------HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCE
T ss_pred -----------------------------------------HHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccE
Confidence 000013568888888888886 66777888888888
Q ss_pred EeCcCCccccCCCcccc-----CCCCCCeEeCCCCcC
Q 038037 765 LNLDNNNLQGHIPSCLG-----NLTNLESLDLSNNRF 796 (798)
Q Consensus 765 L~Ls~N~l~~~~p~~~~-----~l~~L~~L~Ls~N~l 796 (798)
|+|++|++++.....+. ...+|+.|++.++.+
T Consensus 403 L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~ 439 (461)
T 1z7x_W 403 LDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439 (461)
T ss_dssp EECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCC
T ss_pred EECCCCCCCHHHHHHHHHHhccCCcchhheeeccccc
Confidence 88888888754111111 234567777666654
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=2.3e-27 Score=248.89 Aligned_cols=276 Identities=21% Similarity=0.222 Sum_probs=144.3
Q ss_pred CCCCeEEcCCCCCCCCCCchhccCCCCCcEEEccCCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCCchHHHHhc
Q 038037 69 VHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEK 148 (798)
Q Consensus 69 ~~L~~L~L~~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~ 148 (798)
+++++|++++|.+... .+..++.+++|++|++++|.+++..|..+..+++|++|++++|.
T Consensus 52 ~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~------------------- 111 (330)
T 1xku_A 52 PDTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ------------------- 111 (330)
T ss_dssp TTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-------------------
T ss_pred CCCeEEECCCCcCCEe-ChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-------------------
Confidence 3455555555554442 22344555555555555555554445555555555555555554
Q ss_pred CCCCCEEEccCCccCCCCchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCC--ccchhccCCCCCCE
Q 038037 149 LSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRG--ELLVSIGNLHSLKE 226 (798)
Q Consensus 149 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~ 226 (798)
+.. .|..+. ++|++|++++|.+++..+..|..+++|++|++++|.+.. ..+..+..+++|++
T Consensus 112 -------------l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~ 175 (330)
T 1xku_A 112 -------------LKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY 175 (330)
T ss_dssp -------------CSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCE
T ss_pred -------------CCc-cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCE
Confidence 432 122111 455555555555555555555555555555555555532 33445555566666
Q ss_pred EecCCCcCCCcccccccCCCCCCEEECcCCcCCCCCccccccCCCCceeecCCCCcceEecCCccccccCCccccCCCCC
Q 038037 227 LDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSL 306 (798)
Q Consensus 227 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L 306 (798)
|++++|.++. +|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.++.+. +..+..+++|
T Consensus 176 L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~----------~~~~~~l~~L 242 (330)
T 1xku_A 176 IRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD----------NGSLANTPHL 242 (330)
T ss_dssp EECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC----------TTTGGGSTTC
T ss_pred EECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeC----------hhhccCCCCC
Confidence 6666665553 233222 56666666666665555556666666655555555554432 3345556666
Q ss_pred CEEEcCCCCccccCCCCcCCCCCCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCcccCcc
Q 038037 307 KILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMI 386 (798)
Q Consensus 307 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~~~ 386 (798)
++|++++|.+. .+|..+..+++|++|++++|.+++..+..|.... .....+.++.+++++|.+....
T Consensus 243 ~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~------------~~~~~~~l~~l~l~~N~~~~~~ 309 (330)
T 1xku_A 243 RELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG------------YNTKKASYSGVSLFSNPVQYWE 309 (330)
T ss_dssp CEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSS------------CCTTSCCCSEEECCSSSSCGGG
T ss_pred CEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcc------------cccccccccceEeecCcccccc
Confidence 66666666664 4555666667777777777766655444332110 0112356667777777665322
Q ss_pred chHHHhhcCCCCCeEEcccc
Q 038037 387 ELDFLLTSLKNLEALVLSSN 406 (798)
Q Consensus 387 ~~~~~~~~l~~L~~L~l~~n 406 (798)
.....+..+++++.+++++|
T Consensus 310 i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 310 IQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SCGGGGTTCCCGGGEEC---
T ss_pred cCccccccccceeEEEeccc
Confidence 11123556666777777665
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=9.9e-28 Score=251.79 Aligned_cols=288 Identities=20% Similarity=0.221 Sum_probs=159.3
Q ss_pred CCCEEEcCCCCccccCCCCcCCCCCCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCcccC
Q 038037 305 SLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRG 384 (798)
Q Consensus 305 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~ 384 (798)
+++.++++++.+. .+|..+ .++++.|++++|.+.+..+. .+.++++|++|++++|.+..
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~------------------~~~~l~~L~~L~L~~n~l~~ 92 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKD------------------DFKGLQHLYALVLVNNKISK 92 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTT------------------TTTTCTTCCEEECCSSCCCE
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHh------------------HhhCCCCCcEEECCCCccCc
Confidence 4556666655553 333333 24566666666665543333 45555666666666666655
Q ss_pred ccchHHHhhcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcch-hhhCCCCccEEECCCCcccC--CCC
Q 038037 385 MIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPN-FLKNQHHLVILDLSANRIHG--KIP 461 (798)
Q Consensus 385 ~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~ls~n~i~~--~~~ 461 (798)
+.+. .+..+++|++|++++|+++.++.... ++|++|++++|.++.++. .+..+++|+.|++++|.++. ..+
T Consensus 93 ~~~~--~~~~l~~L~~L~L~~n~l~~l~~~~~----~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 166 (332)
T 2ft3_A 93 IHEK--AFSPLRKLQKLYISKNHLVEIPPNLP----SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEP 166 (332)
T ss_dssp ECGG--GSTTCTTCCEEECCSSCCCSCCSSCC----TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCT
T ss_pred cCHh--HhhCcCCCCEEECCCCcCCccCcccc----ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCc
Confidence 4332 24556666666666666554443221 456666666666666653 36667777777777777652 333
Q ss_pred cccccccCcccceeeCCCCccccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCE
Q 038037 462 KWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKN 541 (798)
Q Consensus 462 ~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~ 541 (798)
..+. .+ +|++|++++|+++.++. .+ .++|++
T Consensus 167 ~~~~--~l-~L~~L~l~~n~l~~l~~--------------------------------------------~~--~~~L~~ 197 (332)
T 2ft3_A 167 GAFD--GL-KLNYLRISEAKLTGIPK--------------------------------------------DL--PETLNE 197 (332)
T ss_dssp TSSC--SC-CCSCCBCCSSBCSSCCS--------------------------------------------SS--CSSCSC
T ss_pred cccc--CC-ccCEEECcCCCCCccCc--------------------------------------------cc--cCCCCE
Confidence 3332 22 56666666655543321 11 135666
Q ss_pred EEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCc
Q 038037 542 LVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQ 621 (798)
Q Consensus 542 L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~ 621 (798)
|++++|.+++..+..+..++ +|++|++++|++++..+..|..+++|++|++++|+++ .+|..+..+++|++|++++|+
T Consensus 198 L~l~~n~i~~~~~~~l~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 198 LHLDHNKIQAIELEDLLRYS-KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp CBCCSSCCCCCCTTSSTTCT-TCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSC
T ss_pred EECCCCcCCccCHHHhcCCC-CCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCC
Confidence 66666666655555555555 4666666666666555556666666666666666666 445556666666666666666
Q ss_pred CCccCCcccCC------CCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCC
Q 038037 622 ISDTFPSWLGT------LPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNN 670 (798)
Q Consensus 622 i~~~~~~~~~~------l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N 670 (798)
+++..+..|.. .++|+.|++++|++......+..+..+++|+.+++++|
T Consensus 276 l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 276 ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred CCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 66555555443 24556666666665522112223345566666666655
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=1e-30 Score=288.72 Aligned_cols=392 Identities=20% Similarity=0.162 Sum_probs=199.0
Q ss_pred CeEEEEEcCCCCccCcccCcccccccCCCCeEEcCCCCCCCC---CCchhccCCCCCcEEEccCCCCCCCCchhhh-cCC
Q 038037 43 GHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSS---EIPPEIINLLRLSYLNLSGASLSGQIPSEIL-EFS 118 (798)
Q Consensus 43 ~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~---~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~-~l~ 118 (798)
.++++|+++++.+.+.... ..+..+++|++|++++|.+... .++..+..+++|++|++++|.+.+..+..+. .++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~-~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWA-ELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCCCCHHHHH-HHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ccceehhhhhcccCchhHH-HHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 4677888887776543321 1366777777777777776532 1345566677777777777776543333333 244
Q ss_pred ----CCcEEEccCCCCCCCccccCCCchHHHHhcCCCCCEEEccCCccCCCCchhcc-----CCCCCCEEeccccccCcc
Q 038037 119 ----NLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLA-----NLSSLSFVSLRNCELEGR 189 (798)
Q Consensus 119 ----~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~l~~~ 189 (798)
+|++|++++|.+..... ..++..+..+++|++|++++|.+....+..+. ..++|++|++++|.+++.
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~----~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 157 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGC----GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA 157 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGH----HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred hCCCceeEEEccCCCCCHHHH----HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHH
Confidence 57777777776322111 13455566666666666666665433222221 134566666666655543
Q ss_pred C----cccccCCCCCcEEEccCCCCCCccchhcc-----CCCCCCEEecCCCcCCCc----ccccccCCCCCCEEECcCC
Q 038037 190 I----LSSFGNLSKLLHLDLSLNELRGELLVSIG-----NLHSLKELDLSANILSSE----LPTSIGNLSSLKKLDLSQN 256 (798)
Q Consensus 190 ~----~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-----~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n 256 (798)
. +..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|
T Consensus 158 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 237 (461)
T 1z7x_W 158 SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 237 (461)
T ss_dssp GHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC
Confidence 2 23334445555555555555433222222 133555555555554432 2333444455555555555
Q ss_pred cCCCCCccccccCCCCceeecCCCCcceEecCCccccccCCccccCCCCCCEEEcCCCCcccc----CCCCcCCCCCCcE
Q 038037 257 RFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGK----VPHSIGNFTRLQL 332 (798)
Q Consensus 257 ~i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~ 332 (798)
.+.......+. +..+..+++|++|++++|.+... ++..+..+++|++
T Consensus 238 ~l~~~~~~~l~-----------------------------~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 288 (461)
T 1z7x_W 238 KLGDVGMAELC-----------------------------PGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKE 288 (461)
T ss_dssp BCHHHHHHHHH-----------------------------HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCE
T ss_pred cCChHHHHHHH-----------------------------HHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcce
Confidence 44221110000 11112344555555555554332 2333444555556
Q ss_pred EeccCccCcCCcchhcccccCCcccccCCCChhh-hcCCCCcEEeccCCcccCccc--hHHHhhcCCCCCeEEccccccc
Q 038037 333 LYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSL-RNLTQLIVLSLSQNSYRGMIE--LDFLLTSLKNLEALVLSSNRLS 409 (798)
Q Consensus 333 L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~-~~l~~L~~L~l~~n~l~~~~~--~~~~~~~l~~L~~L~l~~n~i~ 409 (798)
|++++|.+.+..+..+.. .+ ...++|++|++++|.+..... ....+..+++|++|++++|+++
T Consensus 289 L~Ls~n~i~~~~~~~l~~--------------~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 354 (461)
T 1z7x_W 289 LSLAGNELGDEGARLLCE--------------TLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 354 (461)
T ss_dssp EECTTCCCHHHHHHHHHH--------------HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCH
T ss_pred EECCCCCCchHHHHHHHH--------------HhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccc
Confidence 666555554333221111 11 112456666666665543321 1113445566666666666554
Q ss_pred ccccCCCC----CCccCccEEeeCCCCCC-----CcchhhhCCCCccEEECCCCcccCCCCccccc---ccCcccceeeC
Q 038037 410 LLTKATSN----TTSQKFRYVGLRSCNLT-----EFPNFLKNQHHLVILDLSANRIHGKIPKWLLD---PSMQYLNALNL 477 (798)
Q Consensus 410 ~~~~~~~~----~~~~~L~~L~l~~~~l~-----~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~---~~l~~L~~L~l 477 (798)
..+..... ...++|++|++++|.++ .+|..+..+++|++|++++|++++.....+.. .....|+.|.+
T Consensus 355 ~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~ 434 (461)
T 1z7x_W 355 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVL 434 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred cccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheee
Confidence 43211110 01346777777777776 56777888888889999888876532222111 01234666666
Q ss_pred CCCcc
Q 038037 478 SHNLL 482 (798)
Q Consensus 478 s~n~l 482 (798)
.++.+
T Consensus 435 ~~~~~ 439 (461)
T 1z7x_W 435 YDIYW 439 (461)
T ss_dssp TTCCC
T ss_pred ccccc
Confidence 55544
No 49
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1.5e-27 Score=247.53 Aligned_cols=248 Identities=22% Similarity=0.253 Sum_probs=208.1
Q ss_pred cEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccc--cChhhhccccccceeecCCC
Q 038037 495 KTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGL--LPQCLGNFSDELAVLDLQGN 572 (798)
Q Consensus 495 ~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~--~~~~~~~~~~~L~~L~L~~n 572 (798)
+.++++++.++..+...++.++.+++++|+++...+..|..+++|++|++++|.++.. .+..+..++ +|++|++++|
T Consensus 10 ~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~-~L~~L~Ls~n 88 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT-SLKYLDLSFN 88 (306)
T ss_dssp TEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCS-CCCEEECCSC
T ss_pred CEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccccccc-ccCEEECCCC
Confidence 4556666666666555567788888888888866666789999999999999999844 256666776 7999999999
Q ss_pred ccccccccccccCCCccEEEcCCCcccccCC-ccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCccccc-cc
Q 038037 573 NFFGTIPDTFIKESRLGVIDLSHNLFQGRIP-RSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYG-II 650 (798)
Q Consensus 573 ~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~-~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-~~ 650 (798)
.+++ .|..|.++++|++|++++|.+++..+ ..+..+++|++|++++|++.+..+..|..+++|++|++++|.+.+ ..
T Consensus 89 ~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 167 (306)
T 2z66_A 89 GVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167 (306)
T ss_dssp SEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred cccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccc
Confidence 9985 56678999999999999999997655 678999999999999999998888999999999999999999987 44
Q ss_pred CCCCCcCCCCcccEEEccCCcCcCCCChhhhhcchhchhccccccccccCCCCCCCCccccchhccccceeeeccCcccc
Q 038037 651 KEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMT 730 (798)
Q Consensus 651 ~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (798)
+.. +..+++|+.|++++|++++..|.. +.
T Consensus 168 ~~~--~~~l~~L~~L~Ls~n~l~~~~~~~-~~------------------------------------------------ 196 (306)
T 2z66_A 168 PDI--FTELRNLTFLDLSQCQLEQLSPTA-FN------------------------------------------------ 196 (306)
T ss_dssp CSC--CTTCTTCCEEECTTSCCCEECTTT-TT------------------------------------------------
T ss_pred hhH--HhhCcCCCEEECCCCCcCCcCHHH-hc------------------------------------------------
Confidence 443 477899999999999998543322 11
Q ss_pred cCCccCceeEEEcCCCcccccCchhhhcccCCCeEeCcCCccccCCCccccCCC-CCCeEeCCCCcCCC
Q 038037 731 YNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLT-NLESLDLSNNRFFF 798 (798)
Q Consensus 731 ~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~ 798 (798)
-.+.|+.|++++|+++++.+..+..+++|+.|+|++|++++..|..+..++ +|+.|+|++|++++
T Consensus 197 ---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 197 ---SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp ---TCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred ---CCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 146799999999999999888999999999999999999999999999985 99999999999875
No 50
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=2.6e-27 Score=259.67 Aligned_cols=246 Identities=20% Similarity=0.174 Sum_probs=216.6
Q ss_pred cEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCcc
Q 038037 495 KTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNF 574 (798)
Q Consensus 495 ~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i 574 (798)
..+++++..++..+...++.++.+++++|++++..+..|.++++|++|+|++|.+++..+..|.+++ +|++|++++|++
T Consensus 57 ~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~n~l 135 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLA-SLNTLELFDNWL 135 (452)
T ss_dssp CEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCC
T ss_pred cEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcc-cCCEEECCCCcC
Confidence 4566666666666666678889999999999988899999999999999999999988889999988 799999999999
Q ss_pred ccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCC-CcCCccCCcccCCCCCCCEEEccCcccccccCCC
Q 038037 575 FGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGN-NQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEP 653 (798)
Q Consensus 575 ~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 653 (798)
+++.+..|.++++|++|++++|+++.+.+..|..+++|++|++++ |.+..+.+..|.++++|+.|+|++|.++++.
T Consensus 136 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--- 212 (452)
T 3zyi_A 136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP--- 212 (452)
T ss_dssp SBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC---
T ss_pred CccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc---
Confidence 988888899999999999999999988888999999999999999 5566666678999999999999999999873
Q ss_pred CCcCCCCcccEEEccCCcCcCCCChhhhhcchhchhccccccccccCCCCCCCCccccchhccccceeeeccCcccccCC
Q 038037 654 RTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNK 733 (798)
Q Consensus 654 ~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (798)
.+..+++|+.|++++|++++..|.. |..
T Consensus 213 -~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~-------------------------------------------------- 240 (452)
T 3zyi_A 213 -NLTPLVGLEELEMSGNHFPEIRPGS-FHG-------------------------------------------------- 240 (452)
T ss_dssp -CCTTCTTCCEEECTTSCCSEECGGG-GTT--------------------------------------------------
T ss_pred -cccccccccEEECcCCcCcccCccc-ccC--------------------------------------------------
Confidence 2467899999999999998543322 211
Q ss_pred ccCceeEEEcCCCcccccCchhhhcccCCCeEeCcCCccccCCCccccCCCCCCeEeCCCCcCC
Q 038037 734 IPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFF 797 (798)
Q Consensus 734 ~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 797 (798)
.+.|+.|+|++|+++++.+..|.++++|+.|+|++|+++++.+..|..+++|+.|+|++|++.
T Consensus 241 -l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 241 -LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp -CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred -ccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 467899999999999999999999999999999999999999999999999999999999974
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=2.6e-27 Score=258.76 Aligned_cols=246 Identities=22% Similarity=0.202 Sum_probs=216.3
Q ss_pred cEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCcc
Q 038037 495 KTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNF 574 (798)
Q Consensus 495 ~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i 574 (798)
..+++++..++..+...++.++.+++++|++++..+..|.++++|++|+|++|.++++.+..|.+++ +|++|++++|++
T Consensus 46 ~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~-~L~~L~L~~n~l 124 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLA-NLNTLELFDNRL 124 (440)
T ss_dssp CEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCS-SCCEEECCSSCC
T ss_pred CEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCc-cCCEEECCCCcC
Confidence 4566666666666666678888899999999988889999999999999999999988888999988 799999999999
Q ss_pred ccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCC-CcCCccCCcccCCCCCCCEEEccCcccccccCCC
Q 038037 575 FGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGN-NQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEP 653 (798)
Q Consensus 575 ~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 653 (798)
+++.+..|.++++|++|++++|.++.+.+..|..+++|++|++++ |.+..+.+..|.++++|+.|++++|.++.+.
T Consensus 125 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--- 201 (440)
T 3zyj_A 125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP--- 201 (440)
T ss_dssp SSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC---
T ss_pred CeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc---
Confidence 988888999999999999999999988888999999999999999 5566666678999999999999999999774
Q ss_pred CCcCCCCcccEEEccCCcCcCCCChhhhhcchhchhccccccccccCCCCCCCCccccchhccccceeeeccCcccccCC
Q 038037 654 RTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNK 733 (798)
Q Consensus 654 ~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (798)
.+..+++|+.|++++|++++..|.. |..
T Consensus 202 -~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~-------------------------------------------------- 229 (440)
T 3zyj_A 202 -NLTPLIKLDELDLSGNHLSAIRPGS-FQG-------------------------------------------------- 229 (440)
T ss_dssp -CCTTCSSCCEEECTTSCCCEECTTT-TTT--------------------------------------------------
T ss_pred -ccCCCcccCEEECCCCccCccChhh-hcc--------------------------------------------------
Confidence 2467899999999999998543322 111
Q ss_pred ccCceeEEEcCCCcccccCchhhhcccCCCeEeCcCCccccCCCccccCCCCCCeEeCCCCcCC
Q 038037 734 IPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFF 797 (798)
Q Consensus 734 ~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 797 (798)
.+.|+.|+|++|+|+++.+..|..+++|+.|+|++|+++++.+..|..+++|+.|+|++|++.
T Consensus 230 -l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 230 -LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp -CTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred -CccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 467999999999999999999999999999999999999999999999999999999999974
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.3e-27 Score=253.13 Aligned_cols=258 Identities=16% Similarity=0.142 Sum_probs=147.5
Q ss_pred ccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEE
Q 038037 513 PETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVID 592 (798)
Q Consensus 513 ~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 592 (798)
+.++.+++++|++++..+..|..+++|++|++++|.+++..+..+..++ +|++|++++|++++..+..|.++++|++|+
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG-SLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCC-CCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence 3444444444444444444555555555555555555555555555554 455555555555554444455555555555
Q ss_pred cCCCcccccCC-ccccCCCCCcEEeCCCC-cCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCC
Q 038037 593 LSHNLFQGRIP-RSLVNCSKLEFLDLGNN-QISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNN 670 (798)
Q Consensus 593 Ls~N~i~~~~~-~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N 670 (798)
+++|+++++.+ ..|..+++|++|++++| .+....+..|.++++|++|++++|.+.++.+..+ ..+++|+.|++++|
T Consensus 131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~l~~n 208 (353)
T 2z80_A 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL--KSIQNVSHLILHMK 208 (353)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT--TTCSEEEEEEEECS
T ss_pred CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHH--hccccCCeecCCCC
Confidence 55555553332 34555555555555555 3444444555555555555555555555543332 44555555555555
Q ss_pred cCcCCCChhhhhcchhchhccccccccccCCCCCCCCccccchhccccceeeeccCcccccCCccCceeEEEcCCCcccc
Q 038037 671 RFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDG 750 (798)
Q Consensus 671 ~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~ 750 (798)
+++ .+|...+..+..++.+++........... . .........++.++|+++.+++
T Consensus 209 ~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~---~---------------------l~~~~~~~~l~~l~L~~~~l~~ 263 (353)
T 2z80_A 209 QHI-LLLEIFVDVTSSVECLELRDTDLDTFHFS---E---------------------LSTGETNSLIKKFTFRNVKITD 263 (353)
T ss_dssp CST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------------------------------CCCCCCEEEEESCBCCH
T ss_pred ccc-cchhhhhhhcccccEEECCCCcccccccc---c---------------------cccccccchhhccccccccccC
Confidence 553 34444333344444443332211100000 0 0001113456777888887765
Q ss_pred ----cCchhhhcccCCCeEeCcCCccccCCCccccCCCCCCeEeCCCCcCCC
Q 038037 751 ----VIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFFF 798 (798)
Q Consensus 751 ----~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 798 (798)
.+|..+..+++|++|+|++|+++.+.+..|..+++|++|+|++|+++|
T Consensus 264 ~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 264 ESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp HHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 357789999999999999999997766667999999999999999986
No 53
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=4.7e-28 Score=252.69 Aligned_cols=260 Identities=23% Similarity=0.274 Sum_probs=177.6
Q ss_pred CCCCCCCCC-CCCCCCceeeeeEecC--------CCCeEEEEEcCCCCccCcccCcccccccCCCCeEEcCCCCCCCCCC
Q 038037 16 PKAASWKPE-EGDVDCCSWDGVHCDK--------NTGHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEI 86 (798)
Q Consensus 16 ~~~~~w~~~-~~~~~~~~w~~~~~~~--------~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~l 86 (798)
...++|+.. ....++|.|.|+.|.. ...++++|+++++.+. .++. .+..+++|++|++++|.+.. +
T Consensus 45 ~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~--~l~~l~~L~~L~L~~n~l~~--l 119 (328)
T 4fcg_A 45 RWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPD--QAFRLSHLQHMTIDAAGLME--L 119 (328)
T ss_dssp THHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCS--CGGGGTTCSEEEEESSCCCC--C
T ss_pred hhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcCh--hhhhCCCCCEEECCCCCccc--h
Confidence 345778410 0267899999998852 3467888888888876 4444 57778888888888888873 7
Q ss_pred chhccCCCCCcEEEccCCCCCCCCchhhhcCCCCcEEEccCCCCCCCcc-ccCCCchHHHHhcCCCCCEEEccCCccCCC
Q 038037 87 PPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRL-ELQKPNLANLVEKLSNLETLDLGDASIRST 165 (798)
Q Consensus 87 ~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~ 165 (798)
|..++.+++|++|+|++|.+. .+|..+..+++|++|++++|....... .+....+...+..+++|++|++++|.++ .
T Consensus 120 p~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~ 197 (328)
T 4fcg_A 120 PDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-S 197 (328)
T ss_dssp CSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-C
T ss_pred hHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-c
Confidence 778888888888888888887 778888888888888888865221100 0000001112334777777777777776 5
Q ss_pred CchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCEEecCCCcCCCcccccccCC
Q 038037 166 IPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNL 245 (798)
Q Consensus 166 ~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 245 (798)
+|..++.+++|++|++++|.+++. +..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+
T Consensus 198 lp~~l~~l~~L~~L~L~~N~l~~l-~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l 276 (328)
T 4fcg_A 198 LPASIANLQNLKSLKIRNSPLSAL-GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRL 276 (328)
T ss_dssp CCGGGGGCTTCCEEEEESSCCCCC-CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGC
T ss_pred chHhhcCCCCCCEEEccCCCCCcC-chhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcC
Confidence 566677777777777777777643 3356777777777777777766667777777777777777777666677777777
Q ss_pred CCCCEEECcCCcCCCCCccccccCCCCceeecCCCCcc
Q 038037 246 SSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLF 283 (798)
Q Consensus 246 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 283 (798)
++|++|++++|.+.+.+|..+..+++|+.+++..+.+.
T Consensus 277 ~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 277 TQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 77777777777776777777777777766666555443
No 54
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=3.9e-26 Score=234.12 Aligned_cols=175 Identities=22% Similarity=0.214 Sum_probs=87.1
Q ss_pred EEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCc-c
Q 038037 496 TFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNN-F 574 (798)
Q Consensus 496 ~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~-i 574 (798)
.++++++.++..+...++.++.+++++|.+++..+..|..+++|++|++++|.+++..+..+..++ +|++|++++|. +
T Consensus 15 ~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~l 93 (285)
T 1ozn_A 15 TTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA-LLEQLDLSDNAQL 93 (285)
T ss_dssp EEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSCTTC
T ss_pred EEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCcc-CCCEEeCCCCCCc
Confidence 444555544444333344455555555555544444555555555555555555544444555444 45555555554 4
Q ss_pred ccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCC
Q 038037 575 FGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPR 654 (798)
Q Consensus 575 ~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 654 (798)
....+..|..+++|++|++++|.+++..|..|.++++|++|++++|++++..+..|+.+++|++|++++|+++++.+..+
T Consensus 94 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 173 (285)
T 1ozn_A 94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF 173 (285)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred cccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHh
Confidence 44444455555555555555555554444445555555555555555554444445555555555555555544433222
Q ss_pred CcCCCCcccEEEccCCcCc
Q 038037 655 TDCGFSKLHIIDLSNNRFT 673 (798)
Q Consensus 655 ~~~~~~~L~~L~ls~N~l~ 673 (798)
..+++|+.|++++|+++
T Consensus 174 --~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 174 --RGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp --TTCTTCCEEECCSSCCC
T ss_pred --cCccccCEEECCCCccc
Confidence 33444444554444444
No 55
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=2.9e-28 Score=278.19 Aligned_cols=393 Identities=15% Similarity=0.111 Sum_probs=211.3
Q ss_pred HHHHhcCCCCCEEEccCCccCCCCchhccCC-C-CCCEEeccccc-cCcc-CcccccCCCCCcEEEccCCCCCCc----c
Q 038037 143 ANLVEKLSNLETLDLGDASIRSTIPHNLANL-S-SLSFVSLRNCE-LEGR-ILSSFGNLSKLLHLDLSLNELRGE----L 214 (798)
Q Consensus 143 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l-~-~L~~L~l~~~~-l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~----~ 214 (798)
......+++|++|++++|.+....+..+... + +|++|++++|. +... .......+++|++|++++|.+.+. .
T Consensus 105 ~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l 184 (592)
T 3ogk_B 105 TEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWL 184 (592)
T ss_dssp HHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHH
T ss_pred HHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHH
Confidence 3344467777777777776655444444442 3 37777777765 2111 112223667777777777766544 2
Q ss_pred chhccCCCCCCEEecCCCcCCC----cccccccCCCCCCEEECcCCcCCCCCccccccCCCCceeecCCCCcceEecCCc
Q 038037 215 LVSIGNLHSLKELDLSANILSS----ELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFN 290 (798)
Q Consensus 215 ~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~ 290 (798)
+..+..+++|++|++++|.+++ .++..+..+++|++|++++|.+.+ .+..+..+++|++|+++.....
T Consensus 185 ~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~------- 256 (592)
T 3ogk_B 185 HELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNED------- 256 (592)
T ss_dssp HHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCC-------
T ss_pred HHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccc-------
Confidence 2334557777777777777752 233444567778888887777643 5566777777777766542110
Q ss_pred cccccCCccccCCCCCCEEEcCCCCccccCCCCcCCCCCCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCC
Q 038037 291 KFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLT 370 (798)
Q Consensus 291 ~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~ 370 (798)
.-.+..+..+..+++|+.++++++.. ..+|..+..+++|++|++++|.+++..... .+..++
T Consensus 257 ~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~-----------------~~~~~~ 318 (592)
T 3ogk_B 257 IGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCT-----------------LIQKCP 318 (592)
T ss_dssp TTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHH-----------------HHTTCT
T ss_pred cchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHH-----------------HHHhCc
Confidence 00012233455667777777776532 345556666777777777777755332211 345666
Q ss_pred CCcEEeccCCcccCccchHHHhhcCCCCCeEEccc-----------ccccccccCCCCCCccCccEEeeCCCCCCCcchh
Q 038037 371 QLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSS-----------NRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNF 439 (798)
Q Consensus 371 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~-----------n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~ 439 (798)
+|++|+++ +.+... ........+++|++|++++ +.++.. .++..
T Consensus 319 ~L~~L~L~-~~~~~~-~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~-----------------------~~~~l 373 (592)
T 3ogk_B 319 NLEVLETR-NVIGDR-GLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR-----------------------GLIAL 373 (592)
T ss_dssp TCCEEEEE-GGGHHH-HHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHH-----------------------HHHHH
T ss_pred CCCEEecc-CccCHH-HHHHHHHhCCCCCEEEeecCccccccccccCccCHH-----------------------HHHHH
Confidence 77777776 333221 1222345566677777662 111111 12233
Q ss_pred hhCCCCccEEECCCCcccCCCCcccccccCcccceeeCCC----CccccccCCCCCCCCcEEeccCCccCCCCCCCCccc
Q 038037 440 LKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSH----NLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPET 515 (798)
Q Consensus 440 ~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~----n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l 515 (798)
...+++|++|+++.+.+++..+..+.. .+++|+.|++++ |.++..+.
T Consensus 374 ~~~~~~L~~L~l~~~~l~~~~~~~l~~-~~~~L~~L~l~~~~~~n~l~~~p~---------------------------- 424 (592)
T 3ogk_B 374 AQGCQELEYMAVYVSDITNESLESIGT-YLKNLCDFRLVLLDREERITDLPL---------------------------- 424 (592)
T ss_dssp HHHCTTCSEEEEEESCCCHHHHHHHHH-HCCSCCEEEEEECSCCSCCSSCCC----------------------------
T ss_pred HhhCccCeEEEeecCCccHHHHHHHHh-hCCCCcEEEEeecCCCccccCchH----------------------------
Confidence 445677777777666665433333321 255566665542 22221100
Q ss_pred eEEEeecceeecccCccccCCCCCCEEEeeCcc--cccccChhhhccccccceeecCCCccccc-cccccccCCCccEEE
Q 038037 516 ILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNS--LSGLLPQCLGNFSDELAVLDLQGNNFFGT-IPDTFIKESRLGVID 592 (798)
Q Consensus 516 ~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--i~~~~~~~~~~~~~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~ 592 (798)
...++..+.++++|++|++++|. +++.....+....++|++|++++|.+++. .+..+.++++|++|+
T Consensus 425 ----------~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~ 494 (592)
T 3ogk_B 425 ----------DNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLE 494 (592)
T ss_dssp ----------HHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEE
T ss_pred ----------HHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeee
Confidence 00122335557778888887543 44433333333222566666666666542 233345566666666
Q ss_pred cCCCcccccC-CccccCCCCCcEEeCCCCcCCcc
Q 038037 593 LSHNLFQGRI-PRSLVNCSKLEFLDLGNNQISDT 625 (798)
Q Consensus 593 Ls~N~i~~~~-~~~~~~l~~L~~L~L~~N~i~~~ 625 (798)
+++|.+++.. +..+..+++|++|++++|+++..
T Consensus 495 l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 495 MRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp EESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred ccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 6666654321 22233456666666666665543
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=3e-26 Score=237.66 Aligned_cols=281 Identities=22% Similarity=0.273 Sum_probs=168.3
Q ss_pred CeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcchh-hhCCCCccEEECCCCcccCCC--CcccccccCccccee
Q 038037 399 EALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNF-LKNQHHLVILDLSANRIHGKI--PKWLLDPSMQYLNAL 475 (798)
Q Consensus 399 ~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~ls~n~i~~~~--~~~~~~~~l~~L~~L 475 (798)
+.++.+++.++.++... ++++++|++++|+++.+|.. +..+++|++|++++|.++... +..+. .+++|++|
T Consensus 10 ~~l~c~~~~l~~ip~~~----~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~--~~~~L~~L 83 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGI----PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDF--GTTSLKYL 83 (306)
T ss_dssp TEEECCSSCCSSCCSCC----CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHH--SCSCCCEE
T ss_pred CEEEcCCCCcccCCCCC----CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccc--cccccCEE
Confidence 45666666665555422 24666666666666666643 456666666666666655221 22222 34555555
Q ss_pred eCCCCccccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccC-
Q 038037 476 NLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLP- 554 (798)
Q Consensus 476 ~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~- 554 (798)
++++|.+.. +|..+..+++|++|++++|.+++..+
T Consensus 84 ~Ls~n~i~~--------------------------------------------l~~~~~~l~~L~~L~l~~n~l~~~~~~ 119 (306)
T 2z66_A 84 DLSFNGVIT--------------------------------------------MSSNFLGLEQLEHLDFQHSNLKQMSEF 119 (306)
T ss_dssp ECCSCSEEE--------------------------------------------EEEEEETCTTCCEEECTTSEEESSTTT
T ss_pred ECCCCcccc--------------------------------------------ChhhcCCCCCCCEEECCCCcccccccc
Confidence 555554442 33445666677777777777765443
Q ss_pred hhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccc-cCCccccCCCCCcEEeCCCCcCCccCCcccCCC
Q 038037 555 QCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQG-RIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTL 633 (798)
Q Consensus 555 ~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l 633 (798)
..+..++ +|++|++++|.+.+..+..|.++++|++|++++|.+++ ..|..|..+++|++|++++|++++..|..|..+
T Consensus 120 ~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 198 (306)
T 2z66_A 120 SVFLSLR-NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 198 (306)
T ss_dssp TTTTTCT-TCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred hhhhhcc-CCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCC
Confidence 4555555 57777777777766666667777777777777777765 456666677777777777777776666667777
Q ss_pred CCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCChhhhhcchhchhccccccccccCCCCCCCCccccch
Q 038037 634 PNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLI 713 (798)
Q Consensus 634 ~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (798)
++|++|++++|+++++.+.. +..+++|+.|++++|++++..|...
T Consensus 199 ~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~N~l~~~~~~~~--------------------------------- 243 (306)
T 2z66_A 199 SSLQVLNMSHNNFFSLDTFP--YKCLNSLQVLDYSLNHIMTSKKQEL--------------------------------- 243 (306)
T ss_dssp TTCCEEECTTSCCSBCCSGG--GTTCTTCCEEECTTSCCCBCSSSSC---------------------------------
T ss_pred CCCCEEECCCCccCccChhh--ccCcccCCEeECCCCCCcccCHHHH---------------------------------
Confidence 77777777777776654332 3556677777777777664333210
Q ss_pred hccccceeeeccCcccccCCccCceeEEEcCCCcccccCc--hhhhcccCCCeEeCcCCccccCCCccccCC
Q 038037 714 STYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIP--TSIANLKGLQVLNLDNNNLQGHIPSCLGNL 783 (798)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 783 (798)
...++.|+.|+|++|.++...+ ....-+...+.+....+.+....|..+.+.
T Consensus 244 ------------------~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~ 297 (306)
T 2z66_A 244 ------------------QHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGM 297 (306)
T ss_dssp ------------------CCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTTC
T ss_pred ------------------HhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCCc
Confidence 0112456677777777764321 122334455556666677766677766654
No 57
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=3.8e-28 Score=277.18 Aligned_cols=210 Identities=17% Similarity=0.098 Sum_probs=121.8
Q ss_pred cccccCCCCeEEcCCCCCCC--CCCch------------hccCCCCCcEEEccCCCCCCCCchhhhc-CC-CCcEEEccC
Q 038037 64 SLFKLVHLEWLNLAFNDFNS--SEIPP------------EIINLLRLSYLNLSGASLSGQIPSEILE-FS-NLVSLDLSL 127 (798)
Q Consensus 64 ~l~~~~~L~~L~L~~~~~~~--~~l~~------------~~~~l~~L~~L~Ls~~~~~~~~~~~~~~-l~-~L~~L~l~~ 127 (798)
.+..+++|++|+++++.... ..+|. ....+++|++|+|++|.+++..+..+.. ++ +|++|++++
T Consensus 68 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~ 147 (592)
T 3ogk_B 68 LSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDK 147 (592)
T ss_dssp HHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEES
T ss_pred HHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcC
Confidence 56778999999998764211 00111 1226788888888888776555555655 33 488888887
Q ss_pred CCCCCCccccCCCchHHHHhcCCCCCEEEccCCccCCCC----chhccCCCCCCEEeccccccCcc----CcccccCCCC
Q 038037 128 NDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTI----PHNLANLSSLSFVSLRNCELEGR----ILSSFGNLSK 199 (798)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~l~~~----~~~~~~~l~~ 199 (798)
|. .+....++.....+++|++|++++|.+.+.. +..+..+++|++|++++|.+++. .+..+..+++
T Consensus 148 ~~------~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~ 221 (592)
T 3ogk_B 148 CS------GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRS 221 (592)
T ss_dssp CE------EEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTT
T ss_pred CC------CcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCC
Confidence 74 1112345555667888888888888765542 22345567777777777776522 2233445667
Q ss_pred CcEEEccCCCCCCccchhccCCCCCCEEecCCCcCC---CcccccccCCCCCCEEECcCCcCCCCCccccccCCCCceee
Q 038037 200 LLHLDLSLNELRGELLVSIGNLHSLKELDLSANILS---SELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLD 276 (798)
Q Consensus 200 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 276 (798)
|++|++++|.+.+ .+..+..+++|++|++++.... ...+..+..+++|+.|+++++.. ...|..+..+++|++|+
T Consensus 222 L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~ 299 (592)
T 3ogk_B 222 LVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLD 299 (592)
T ss_dssp CCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEE
T ss_pred CcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEe
Confidence 7777777766654 4455666666776666543221 12223344555566665555432 33344444455555444
Q ss_pred cCCCC
Q 038037 277 LSRNG 281 (798)
Q Consensus 277 l~~n~ 281 (798)
+++|.
T Consensus 300 Ls~~~ 304 (592)
T 3ogk_B 300 LLYAL 304 (592)
T ss_dssp ETTCC
T ss_pred cCCCc
Confidence 44443
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1e-25 Score=230.94 Aligned_cols=143 Identities=23% Similarity=0.239 Sum_probs=67.7
Q ss_pred cccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCC
Q 038037 532 WICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSK 611 (798)
Q Consensus 532 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~ 611 (798)
.|..+++|++|++++|.+++..+..+..++ +|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++
T Consensus 100 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 178 (285)
T 1ozn_A 100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLA-ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS 178 (285)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred HhcCCcCCCEEECCCCcCCEECHhHhhCCc-CCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccc
Confidence 344444555555555555444444444444 3555555555554444444444555555555555554443444444555
Q ss_pred CcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCC
Q 038037 612 LEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLP 677 (798)
Q Consensus 612 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p 677 (798)
|++|++++|++++..|..|..+++|+.|++++|+++++.+. .+..+++|+.|++++|++.+.++
T Consensus 179 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 179 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE--ALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHH--HHTTCTTCCEEECCSSCEECSGG
T ss_pred cCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHH--HcccCcccCEEeccCCCccCCCC
Confidence 55555555555444444444455555555555554443221 12334445555555555444333
No 59
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=1.3e-27 Score=248.11 Aligned_cols=226 Identities=23% Similarity=0.270 Sum_probs=177.3
Q ss_pred ceEEEeecceee-cccCcccc-------CCCCCCEEEeeCcccccccChhh--hccccccceeecCCCcccccccccccc
Q 038037 515 TILYLVSNNSLT-GEIPSWIC-------NLNTLKNLVLSHNSLSGLLPQCL--GNFSDELAVLDLQGNNFFGTIPDTFIK 584 (798)
Q Consensus 515 l~~l~l~~n~l~-~~~~~~~~-------~l~~L~~L~Ls~n~i~~~~~~~~--~~~~~~L~~L~L~~n~i~~~~~~~~~~ 584 (798)
++.+++++|.+. ..+|..+. ++++|++|++++|.+++..|..+ ..++ +|++|++++|++++. |..|..
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~-~~~~~~ 142 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGP-DLNILNLRNVSWATR-DAWLAE 142 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSC-CCSEEEEESCBCSSS-SSHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCC-CccEEEccCCCCcch-hHHHHH
Confidence 556666666663 34555554 68899999999999998888775 6666 799999999999877 777877
Q ss_pred C-----CCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCcc--CCccc--CCCCCCCEEEccCcccccccCCC-C
Q 038037 585 E-----SRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDT--FPSWL--GTLPNLNVLILRSNTFYGIIKEP-R 654 (798)
Q Consensus 585 l-----~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~--~~~~~--~~l~~L~~L~L~~N~l~~~~~~~-~ 654 (798)
+ ++|++|++++|++++..|..|..+++|++|++++|++.+. .+..+ ..+++|++|++++|+++++.... .
T Consensus 143 l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 222 (312)
T 1wwl_A 143 LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA 222 (312)
T ss_dssp HHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHH
T ss_pred HHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHH
Confidence 7 8999999999999988888999999999999999998754 23333 88899999999999988432111 1
Q ss_pred CcCCCCcccEEEccCCcCcCCCChhhhhcchhchhccccccccccCCCCCCCCccccchhccccceeeeccCcccccCCc
Q 038037 655 TDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKI 734 (798)
Q Consensus 655 ~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (798)
.+..+++|+.|++++|++++..|...+ ..
T Consensus 223 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~---------------------------------------------------~~ 251 (312)
T 1wwl_A 223 LAAARVQLQGLDLSHNSLRDAAGAPSC---------------------------------------------------DW 251 (312)
T ss_dssp HHHTTCCCSEEECTTSCCCSSCCCSCC---------------------------------------------------CC
T ss_pred HHhcCCCCCEEECCCCcCCcccchhhh---------------------------------------------------hh
Confidence 123578999999999999865542211 01
Q ss_pred cCceeEEEcCCCcccccCchhhhcccCCCeEeCcCCccccCCCccccCCCCCCeEeCCCCcCCC
Q 038037 735 PDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFFF 798 (798)
Q Consensus 735 ~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 798 (798)
++.|+.|+|++|+|+ .+|..+. ++|++|||++|+|++. |. +..+++|+.|++++|+|+|
T Consensus 252 l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 252 PSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred cCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 467899999999999 4555555 8999999999999987 65 8999999999999999986
No 60
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=4.8e-26 Score=241.17 Aligned_cols=288 Identities=17% Similarity=0.169 Sum_probs=225.6
Q ss_pred CCCCceeeeeEecCCCCeEEEEEcCCCCccCcccCcccccccCCCCeEEcCCCCCCCCCCchhccCCCCCcEEEccCCCC
Q 038037 27 DVDCCSWDGVHCDKNTGHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASL 106 (798)
Q Consensus 27 ~~~~~~w~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~ 106 (798)
+...|.|.++ |+ .+++.++. ++. .+ .++|++|++++|.+... .+..+..+++|++|++++|.+
T Consensus 26 ~~~~C~~~~~-c~----------~~~~~l~~-iP~--~~--~~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l 88 (353)
T 2z80_A 26 ASLSCDRNGI-CK----------GSSGSLNS-IPS--GL--TEAVKSLDLSNNRITYI-SNSDLQRCVNLQALVLTSNGI 88 (353)
T ss_dssp -CCEECTTSE-EE----------CCSTTCSS-CCT--TC--CTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCC
T ss_pred cCCCCCCCeE-ee----------CCCCCccc-ccc--cc--cccCcEEECCCCcCccc-CHHHhccCCCCCEEECCCCcc
Confidence 4567888776 53 34555433 222 22 35899999999998864 345789999999999999999
Q ss_pred CCCCchhhhcCCCCcEEEccCCCCCCCccccCCCchHHHHhcCCCCCEEEccCCccCCCCc-hhccCCCCCCEEecccc-
Q 038037 107 SGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIP-HNLANLSSLSFVSLRNC- 184 (798)
Q Consensus 107 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~- 184 (798)
++..|..+.++++|++|++++|.+.. ..+..+..+++|++|++++|.+....+ ..+..+++|++|++++|
T Consensus 89 ~~~~~~~~~~l~~L~~L~Ls~n~l~~--------~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~ 160 (353)
T 2z80_A 89 NTIEEDSFSSLGSLEHLDLSYNYLSN--------LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD 160 (353)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSS--------CCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS
T ss_pred CccCHhhcCCCCCCCEEECCCCcCCc--------CCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCc
Confidence 97778889999999999999998422 223458899999999999999986555 57899999999999999
Q ss_pred ccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCEEecCCCcCCCcccccccCCCCCCEEECcCCcCCCCCcc
Q 038037 185 ELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPT 264 (798)
Q Consensus 185 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~ 264 (798)
.+....+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+.
T Consensus 161 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 240 (353)
T 2z80_A 161 TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFS 240 (353)
T ss_dssp SCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC
T ss_pred cccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccc
Confidence 47777778899999999999999999988899999999999999999999755444556789999999999999776554
Q ss_pred ccc---cCCCCceeecCCCCcceEecCCccccccCCccccCCCCCCEEEcCCCCccccCCCCcCCCCCCcEEeccCccCc
Q 038037 265 SIG---NLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFS 341 (798)
Q Consensus 265 ~~~---~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 341 (798)
.+. ..+.++.++++++.+ +++.+. .+|..+..+++|++|++++|.+....+..|..+++|++|++++|.+.
T Consensus 241 ~l~~~~~~~~l~~l~L~~~~l-----~~~~l~-~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 241 ELSTGETNSLIKKFTFRNVKI-----TDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp ------CCCCCCEEEEESCBC-----CHHHHH-HHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccccccccchhhccccccccc-----cCcchh-hhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCcc
Confidence 443 345676666655543 223322 34667888999999999999997554455789999999999999998
Q ss_pred CCcc
Q 038037 342 GDLL 345 (798)
Q Consensus 342 ~~~~ 345 (798)
+..+
T Consensus 315 ~~~~ 318 (353)
T 2z80_A 315 CSCP 318 (353)
T ss_dssp CCHH
T ss_pred CcCC
Confidence 6543
No 61
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=1.1e-25 Score=234.87 Aligned_cols=225 Identities=20% Similarity=0.244 Sum_probs=191.8
Q ss_pred ccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEE
Q 038037 513 PETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVID 592 (798)
Q Consensus 513 ~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 592 (798)
..++.+++++|.++ .+|..+..+++|++|++++|.++ .+|..+..++ +|++|++++|.++ .+|..|.++++|++|+
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~-~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFA-GLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGT-TCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccC-CCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 45566777777776 56777888999999999999998 7788888887 7999999999998 6688899999999999
Q ss_pred cCCCcccccCCccccC---------CCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCccc
Q 038037 593 LSHNLFQGRIPRSLVN---------CSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLH 663 (798)
Q Consensus 593 Ls~N~i~~~~~~~~~~---------l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~ 663 (798)
+++|.+.+.+|..+.. +++|++|++++|+++ .+|..+..+++|++|+|++|+++++.+ .+..+++|+
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~---~l~~l~~L~ 232 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGP---AIHHLPKLE 232 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCG---GGGGCTTCC
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCch---hhccCCCCC
Confidence 9998888888877654 999999999999998 677889999999999999999987643 346789999
Q ss_pred EEEccCCcCcCCCChhhhhcchhchhccccccccccCCCCCCCCccccchhccccceeeeccCcccccCCccCceeEEEc
Q 038037 664 IIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIIL 743 (798)
Q Consensus 664 ~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 743 (798)
.|++++|++.+.+|... . -.+.|+.|+|
T Consensus 233 ~L~Ls~n~~~~~~p~~~-~---------------------------------------------------~l~~L~~L~L 260 (328)
T 4fcg_A 233 ELDLRGCTALRNYPPIF-G---------------------------------------------------GRAPLKRLIL 260 (328)
T ss_dssp EEECTTCTTCCBCCCCT-T---------------------------------------------------CCCCCCEEEC
T ss_pred EEECcCCcchhhhHHHh-c---------------------------------------------------CCCCCCEEEC
Confidence 99999999887766431 0 1467899999
Q ss_pred CCCcccccCchhhhcccCCCeEeCcCCccccCCCccccCCCCCCeEeCCCCcCC
Q 038037 744 SSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFF 797 (798)
Q Consensus 744 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 797 (798)
++|++.+.+|..+..+++|++|+|++|++.+.+|..++.+++|+.+++..|.+.
T Consensus 261 ~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 261 KDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 999999999999999999999999999999999999999999999999887654
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=3.9e-24 Score=239.75 Aligned_cols=269 Identities=26% Similarity=0.312 Sum_probs=186.3
Q ss_pred cCccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCcccccccCcccceeeCCCCccccccCCCCCCCCcEEecc
Q 038037 421 QKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFS 500 (798)
Q Consensus 421 ~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~ 500 (798)
..++.|++++|+++.+|..+. ++|+.|++++|.++. +|. .+++|++|++++|+++.++. ..++++.|+++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~-lp~-----~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls 109 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTS-LPA-----LPPELRTLEVSGNQLTSLPV--LPPGLLELSIF 109 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSC-CCC-----CCTTCCEEEECSCCCSCCCC--CCTTCCEEEEC
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCC-CCC-----cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECc
Confidence 458899999999999987665 799999999999884 443 36789999999999988776 56788888888
Q ss_pred CCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCcccccccc
Q 038037 501 SNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPD 580 (798)
Q Consensus 501 ~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~ 580 (798)
+|.+++... .+++++.+++++|++++. |.. +++|++|++++|.++++ |. .+.+|+.|++++|.++++ |
T Consensus 110 ~N~l~~l~~-~l~~L~~L~L~~N~l~~l-p~~---l~~L~~L~Ls~N~l~~l-~~----~~~~L~~L~L~~N~l~~l-~- 177 (622)
T 3g06_A 110 SNPLTHLPA-LPSGLCKLWIFGNQLTSL-PVL---PPGLQELSVSDNQLASL-PA----LPSELCKLWAYNNQLTSL-P- 177 (622)
T ss_dssp SCCCCCCCC-CCTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSCC-CC----CCTTCCEEECCSSCCSCC-C-
T ss_pred CCcCCCCCC-CCCCcCEEECCCCCCCcC-CCC---CCCCCEEECcCCcCCCc-CC----ccCCCCEEECCCCCCCCC-c-
Confidence 888877655 567777777777777753 332 36777777777777643 32 123577777777777753 3
Q ss_pred ccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCC
Q 038037 581 TFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFS 660 (798)
Q Consensus 581 ~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~ 660 (798)
..+++|+.|++++|.+++ +|.. +++|+.|++++|.++. +|. .+++|+.|++++|.++++. ..++
T Consensus 178 --~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~lp------~~l~ 241 (622)
T 3g06_A 178 --MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTSLP------VLPS 241 (622)
T ss_dssp --CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCCC------CCCT
T ss_pred --ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCcCC------CCCC
Confidence 345677777777777774 3322 3667777777777764 332 2366777777777776642 2346
Q ss_pred cccEEEccCCcCcCCCChhhhhcchhchhccccccccccCCCCCCCCccccchhccccceeeeccCcccccCCccCceeE
Q 038037 661 KLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTG 740 (798)
Q Consensus 661 ~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 740 (798)
+|+.|++++|+++ .+|. .+++|+.
T Consensus 242 ~L~~L~Ls~N~L~-~lp~-------------------------------------------------------~~~~L~~ 265 (622)
T 3g06_A 242 ELKELMVSGNRLT-SLPM-------------------------------------------------------LPSGLLS 265 (622)
T ss_dssp TCCEEECCSSCCS-CCCC-------------------------------------------------------CCTTCCE
T ss_pred cCcEEECCCCCCC-cCCc-------------------------------------------------------ccccCcE
Confidence 7777777777776 3332 0355777
Q ss_pred EEcCCCcccccCchhhhcccCCCeEeCcCCccccCCCccccCCC
Q 038037 741 IILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLT 784 (798)
Q Consensus 741 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 784 (798)
|+|++|+|+ .+|..+..+++|+.|+|++|.+++..|..|..++
T Consensus 266 L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 266 LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp EECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred EeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 777777777 4466677777777777777777776666555443
No 63
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=1.4e-24 Score=243.26 Aligned_cols=270 Identities=21% Similarity=0.202 Sum_probs=220.0
Q ss_pred CCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCcccccccCccccee
Q 038037 396 KNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNAL 475 (798)
Q Consensus 396 ~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L 475 (798)
.+++.|++++|.++.++.... ++|++|++++|.++.+|. .+++|++|++++|.++. +|. .+++|++|
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~----~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~-lp~-----~l~~L~~L 106 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP----AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTS-LPV-----LPPGLLEL 106 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC----TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSC-CCC-----CCTTCCEE
T ss_pred CCCcEEEecCCCcCccChhhC----CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCc-CCC-----CCCCCCEE
Confidence 468999999999987775432 789999999999999987 57899999999999884 443 46889999
Q ss_pred eCCCCccccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccCh
Q 038037 476 NLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQ 555 (798)
Q Consensus 476 ~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~ 555 (798)
++++|+++.++. ...+++.|++++|.+++.+. ..++++.+++++|++++. |. .+++|+.|++++|.+++ +|
T Consensus 107 ~Ls~N~l~~l~~--~l~~L~~L~L~~N~l~~lp~-~l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~-l~- 177 (622)
T 3g06_A 107 SIFSNPLTHLPA--LPSGLCKLWIFGNQLTSLPV-LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS-LP- 177 (622)
T ss_dssp EECSCCCCCCCC--CCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CC-
T ss_pred ECcCCcCCCCCC--CCCCcCEEECCCCCCCcCCC-CCCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCC-Cc-
Confidence 999999999877 56889999999999988654 468999999999999864 33 35789999999999986 44
Q ss_pred hhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCC
Q 038037 556 CLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPN 635 (798)
Q Consensus 556 ~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~ 635 (798)
..+ ++|+.|++++|.++++ |. .+++|+.|++++|.++. +|. .+++|++|++++|++++ +| ..+++
T Consensus 178 --~~~-~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~ 242 (622)
T 3g06_A 178 --MLP-SGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP---VLPSE 242 (622)
T ss_dssp --CCC-TTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC---CCCTT
T ss_pred --ccC-CCCcEEECCCCCCCCC-CC---ccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC---CCCCc
Confidence 223 3799999999999864 33 34789999999999994 443 24789999999999986 44 45689
Q ss_pred CCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCChhhhhcchhchhccccccccccCCCCCCCCccccchhc
Q 038037 636 LNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLIST 715 (798)
Q Consensus 636 L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (798)
|+.|+|++|.++.+.. .+++|+.|++++|+++ .+|... ..
T Consensus 243 L~~L~Ls~N~L~~lp~------~~~~L~~L~Ls~N~L~-~lp~~l-~~-------------------------------- 282 (622)
T 3g06_A 243 LKELMVSGNRLTSLPM------LPSGLLSLSVYRNQLT-RLPESL-IH-------------------------------- 282 (622)
T ss_dssp CCEEECCSSCCSCCCC------CCTTCCEEECCSSCCC-SCCGGG-GG--------------------------------
T ss_pred CcEEECCCCCCCcCCc------ccccCcEEeCCCCCCC-cCCHHH-hh--------------------------------
Confidence 9999999999987643 4688999999999998 667531 11
Q ss_pred cccceeeeccCcccccCCccCceeEEEcCCCcccccCchhhhcccC
Q 038037 716 YDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKG 761 (798)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~ 761 (798)
.+.|+.|+|++|.+++..|..+..++.
T Consensus 283 -------------------l~~L~~L~L~~N~l~~~~~~~l~~L~~ 309 (622)
T 3g06_A 283 -------------------LSSETTVNLEGNPLSERTLQALREITS 309 (622)
T ss_dssp -------------------SCTTCEEECCSCCCCHHHHHHHHHHHH
T ss_pred -------------------ccccCEEEecCCCCCCcCHHHHHhccc
Confidence 367899999999999999888877653
No 64
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=2.1e-24 Score=235.75 Aligned_cols=237 Identities=22% Similarity=0.192 Sum_probs=173.0
Q ss_pred CccEEeeCCCCCCCcc-hhhhCCCCccEEECCCCcccCCCCcccccccCcccceeeCCCCccccccCCCCCCCCcEEecc
Q 038037 422 KFRYVGLRSCNLTEFP-NFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFS 500 (798)
Q Consensus 422 ~L~~L~l~~~~l~~l~-~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~ 500 (798)
.++.|++++|+++.++ ..+.++++|+.|++++|.+....+..+. .+++|++|++++|+++.++...+
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~---------- 132 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFN--GLANLNTLELFDNRLTTIPNGAF---------- 132 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGT--TCSSCCEEECCSSCCSSCCTTTS----------
T ss_pred CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhcc--CCccCCEEECCCCcCCeeCHhHh----------
Confidence 3444444444444443 3455555555555555555544444443 45555555555555554433111
Q ss_pred CCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCc-ccccccChhhhccccccceeecCCCccccccc
Q 038037 501 SNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHN-SLSGLLPQCLGNFSDELAVLDLQGNNFFGTIP 579 (798)
Q Consensus 501 ~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~ 579 (798)
...++++.+++++|.+....+..|..+++|++|++++| .+..+.+..|.+++ +|++|++++|+++.+ |
T Consensus 133 ---------~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~-~L~~L~L~~n~l~~~-~ 201 (440)
T 3zyj_A 133 ---------VYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS-NLRYLNLAMCNLREI-P 201 (440)
T ss_dssp ---------CSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCS-SCCEEECTTSCCSSC-C
T ss_pred ---------hccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccc-ccCeecCCCCcCccc-c
Confidence 11234444444555555555667888999999999994 55544555777887 799999999999855 4
Q ss_pred cccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCC
Q 038037 580 DTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGF 659 (798)
Q Consensus 580 ~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~ 659 (798)
.+..+++|++|+|++|+++++.|..|.++++|++|+|++|+++++.+..|..+++|+.|+|++|+++++.+..+ ..+
T Consensus 202 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l 278 (440)
T 3zyj_A 202 -NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLF--TPL 278 (440)
T ss_dssp -CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTT--SSC
T ss_pred -ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHh--ccc
Confidence 48889999999999999999889999999999999999999999999999999999999999999998866544 678
Q ss_pred CcccEEEccCCcCcCCCChhhhhcc
Q 038037 660 SKLHIIDLSNNRFTGKLPSKSFLCW 684 (798)
Q Consensus 660 ~~L~~L~ls~N~l~~~~p~~~~~~~ 684 (798)
++|+.|++++|++.|.+...|+..|
T Consensus 279 ~~L~~L~L~~Np~~CdC~l~~l~~~ 303 (440)
T 3zyj_A 279 HHLERIHLHHNPWNCNCDILWLSWW 303 (440)
T ss_dssp TTCCEEECCSSCEECSSTTHHHHHH
T ss_pred cCCCEEEcCCCCccCCCCchHHHHH
Confidence 9999999999999998887777654
No 65
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=2.2e-24 Score=236.36 Aligned_cols=238 Identities=21% Similarity=0.186 Sum_probs=180.5
Q ss_pred cCccEEeeCCCCCCCc-chhhhCCCCccEEECCCCcccCCCCcccccccCcccceeeCCCCccccccCCCCCCCCcEEec
Q 038037 421 QKFRYVGLRSCNLTEF-PNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDF 499 (798)
Q Consensus 421 ~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l 499 (798)
+.+++|++++|+++.+ +..+..+++|+.|++++|.+.+..+..+. .+++|++|++++|+++.++...+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~--------- 143 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFN--GLASLNTLELFDNWLTVIPSGAF--------- 143 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCCSBCCTTTS---------
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhcc--CcccCCEEECCCCcCCccChhhh---------
Confidence 3455555555555544 34456666666666666666655555544 56666666666666665443211
Q ss_pred cCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeC-cccccccChhhhccccccceeecCCCcccccc
Q 038037 500 SSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSH-NSLSGLLPQCLGNFSDELAVLDLQGNNFFGTI 578 (798)
Q Consensus 500 ~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~ 578 (798)
...++++.+++++|.++...+..|..+++|++|++++ +.+..+.+..|..++ +|++|++++|++++.
T Consensus 144 ----------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~-~L~~L~L~~n~l~~~- 211 (452)
T 3zyi_A 144 ----------EYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF-NLKYLNLGMCNIKDM- 211 (452)
T ss_dssp ----------SSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCT-TCCEEECTTSCCSSC-
T ss_pred ----------cccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCC-CCCEEECCCCccccc-
Confidence 1234455555555556656667888999999999999 455545555677777 799999999999865
Q ss_pred ccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCC
Q 038037 579 PDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCG 658 (798)
Q Consensus 579 ~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 658 (798)
| .+..+++|++|++++|.+++..|..|.++++|++|++++|+++++.+..|..+++|+.|+|++|+++++.+..+ ..
T Consensus 212 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~ 288 (452)
T 3zyi_A 212 P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLF--TP 288 (452)
T ss_dssp C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSS--TT
T ss_pred c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHh--cc
Confidence 3 57889999999999999999989999999999999999999999999999999999999999999998866544 67
Q ss_pred CCcccEEEccCCcCcCCCChhhhhcc
Q 038037 659 FSKLHIIDLSNNRFTGKLPSKSFLCW 684 (798)
Q Consensus 659 ~~~L~~L~ls~N~l~~~~p~~~~~~~ 684 (798)
+++|+.|++++|++.|.+...++..|
T Consensus 289 l~~L~~L~L~~Np~~CdC~~~~l~~~ 314 (452)
T 3zyi_A 289 LRYLVELHLHHNPWNCDCDILWLAWW 314 (452)
T ss_dssp CTTCCEEECCSSCEECSTTTHHHHHH
T ss_pred ccCCCEEEccCCCcCCCCCchHHHHH
Confidence 89999999999999998887776544
No 66
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=2.1e-27 Score=271.23 Aligned_cols=419 Identities=16% Similarity=0.133 Sum_probs=191.0
Q ss_pred HhcCCCCCEEEccCCccCCCCchhcc-CCCCCCEEecccc-ccCcc-CcccccCCCCCcEEEccCCCCCCccchhcc---
Q 038037 146 VEKLSNLETLDLGDASIRSTIPHNLA-NLSSLSFVSLRNC-ELEGR-ILSSFGNLSKLLHLDLSLNELRGELLVSIG--- 219 (798)
Q Consensus 146 ~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~-~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~--- 219 (798)
...+++|++|++++|.+.+..+..+. .+++|++|++++| .++.. .+..+..+++|++|++++|.+++..+..+.
T Consensus 101 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 101 SSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180 (594)
T ss_dssp HHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred HHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence 34455555555555554443333333 3555555555555 23221 112223455566666665554433322222
Q ss_pred -CCCCCCEEecCCCc--CCC-cccccccCCCCCCEEECcCCcCCCCCccccccCCCCceeecCCCCcceEecCCcccccc
Q 038037 220 -NLHSLKELDLSANI--LSS-ELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGE 295 (798)
Q Consensus 220 -~l~~L~~L~L~~n~--l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~ 295 (798)
.+++|++|++++|. +.. .++..+..+++|++|++++|......+..+..+++|++|+++.+.. ++..+.+.+.
T Consensus 181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~---~~~~~~~~~l 257 (594)
T 2p1m_B 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTA---EVRPDVYSGL 257 (594)
T ss_dssp TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCC---CCCHHHHHHH
T ss_pred hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccC---ccchhhHHHH
Confidence 44566666666654 111 0111123356666666666622122444555666666666544321 1222222221
Q ss_pred CCccccCCCCCCEE-EcCCCCccccCCCCcCCCCCCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcE
Q 038037 296 FPWSTRNFSSLKIL-DLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIV 374 (798)
Q Consensus 296 ~~~~~~~l~~L~~L-~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~ 374 (798)
+..+.++++|+.+ .+.+... ..++..+..+++|++|++++|.+++..... .+..+++|++
T Consensus 258 -~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~-----------------~~~~~~~L~~ 318 (594)
T 2p1m_B 258 -SVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVK-----------------LLCQCPKLQR 318 (594)
T ss_dssp -HHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHH-----------------HHTTCTTCCE
T ss_pred -HHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHH-----------------HHhcCCCcCE
Confidence 2245566666666 3332221 223333345666777777766654322110 2445666677
Q ss_pred EeccCCcccCccchHHHhhcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCC--cchhhhCCCCccEEECC
Q 038037 375 LSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTE--FPNFLKNQHHLVILDLS 452 (798)
Q Consensus 375 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~--l~~~~~~~~~L~~L~ls 452 (798)
|++++| +. ..........+++|++|++.++.-. + ....+.++. +......+++|+.|.++
T Consensus 319 L~l~~~-~~-~~~l~~l~~~~~~L~~L~L~~~~~~--g--------------~~~~~~l~~~~l~~l~~~~~~L~~L~~~ 380 (594)
T 2p1m_B 319 LWVLDY-IE-DAGLEVLASTCKDLRELRVFPSEPF--V--------------MEPNVALTEQGLVSVSMGCPKLESVLYF 380 (594)
T ss_dssp EEEEGG-GH-HHHHHHHHHHCTTCCEEEEECSCTT--C--------------SSCSSCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred EeCcCc-cC-HHHHHHHHHhCCCCCEEEEecCccc--c--------------cccCCCCCHHHHHHHHHhchhHHHHHHh
Confidence 776666 22 1112222344666666666443100 0 000111111 11222335666666665
Q ss_pred CCcccCCCCcccccccCcccceeeCCC------CccccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceee
Q 038037 453 ANRIHGKIPKWLLDPSMQYLNALNLSH------NLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLT 526 (798)
Q Consensus 453 ~n~i~~~~~~~~~~~~l~~L~~L~ls~------n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~ 526 (798)
.+.+++.....+.. .+++|+.|+++. +.++..+. .
T Consensus 381 ~~~l~~~~~~~l~~-~~~~L~~L~L~~~~~~~~~~l~~~~~--------------------------------------~ 421 (594)
T 2p1m_B 381 CRQMTNAALITIAR-NRPNMTRFRLCIIEPKAPDYLTLEPL--------------------------------------D 421 (594)
T ss_dssp ESCCCHHHHHHHHH-HCTTCCEEEEEESSTTCCCTTTCCCT--------------------------------------H
T ss_pred cCCcCHHHHHHHHh-hCCCcceeEeecccCCCcccccCCch--------------------------------------h
Confidence 55554332222211 245555555541 11111000 0
Q ss_pred cccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCcccccccccc-ccCCCccEEEcCCCcccccCCc-
Q 038037 527 GEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTF-IKESRLGVIDLSHNLFQGRIPR- 604 (798)
Q Consensus 527 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~Ls~N~i~~~~~~- 604 (798)
..++..+..+++|++|++++ .+++.....+....++|++|++++|.+++.....+ .++++|++|++++|.+++....
T Consensus 422 ~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~ 500 (594)
T 2p1m_B 422 IGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLA 500 (594)
T ss_dssp HHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHH
T ss_pred hHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHH
Confidence 01112244566777777766 45443333333312256666666666654333333 4566666666666666433222
Q ss_pred cccCCCCCcEEeCCCCcCCccCCccc-CCCCCCCEEEccCc
Q 038037 605 SLVNCSKLEFLDLGNNQISDTFPSWL-GTLPNLNVLILRSN 644 (798)
Q Consensus 605 ~~~~l~~L~~L~L~~N~i~~~~~~~~-~~l~~L~~L~L~~N 644 (798)
....+++|++|++++|+++......+ ..++.|+...+..+
T Consensus 501 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 501 NASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp TGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred HHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence 22345666666666666643222222 33455554444443
No 67
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=1.8e-24 Score=220.62 Aligned_cols=208 Identities=25% Similarity=0.247 Sum_probs=129.6
Q ss_pred CCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeC
Q 038037 538 TLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDL 617 (798)
Q Consensus 538 ~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L 617 (798)
+|++|++++|.+++..+..+..++ +|++|++++|.++++.+..|.++++|++|++++|.+++..+..|.++++|++|++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFP-ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCT-TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CccEEECCCCcccccCHhHhcccc-CCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 566666666666655555565555 5666666666666665666666667777777777766666666666677777777
Q ss_pred CCCcCCccCCcccCCCCCCCEEEccCccccccc-CCCCCcCCCCcccEEEccCCcCcCCCChhhhhcchhchhccccccc
Q 038037 618 GNNQISDTFPSWLGTLPNLNVLILRSNTFYGII-KEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELR 696 (798)
Q Consensus 618 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~~~~ 696 (798)
++|++.+..+..+..+++|++|++++|.++++. +. .+..+++|+.|++++|++++ ++...+..+..+
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~--~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L--------- 175 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE--YFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQM--------- 175 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG--GGGGCTTCCEEECCSSCCCE-ECGGGGHHHHTC---------
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCch--hhccCCCCCEEECCCCCCCc-CCHHHhhhhhhc---------
Confidence 777766655556666777777777777666532 22 23556677777777777663 232222211111
Q ss_pred cccCCCCCCCCccccchhccccceeeeccCcccccCCccCcee-EEEcCCCcccccCchhhhcccCCCeEeCcCCccccC
Q 038037 697 YLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILT-GIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGH 775 (798)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 775 (798)
+.+. .|++++|+++++.+..+.. .+|+.|+|++|+++++
T Consensus 176 ---------------------------------------~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~ 215 (276)
T 2z62_A 176 ---------------------------------------PLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSV 215 (276)
T ss_dssp ---------------------------------------TTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCC
T ss_pred ---------------------------------------cccceeeecCCCcccccCccccCC-CcccEEECCCCceeec
Confidence 1122 5777777777665555443 3677777777777766
Q ss_pred CCccccCCCCCCeEeCCCCcCCC
Q 038037 776 IPSCLGNLTNLESLDLSNNRFFF 798 (798)
Q Consensus 776 ~p~~~~~l~~L~~L~Ls~N~l~~ 798 (798)
.+..|..+++|+.|++++|++++
T Consensus 216 ~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 216 PDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CTTTTTTCCSCCEEECCSSCBCC
T ss_pred CHhHhcccccccEEEccCCcccc
Confidence 66666777777777777777664
No 68
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=4.6e-27 Score=268.40 Aligned_cols=189 Identities=17% Similarity=0.178 Sum_probs=103.6
Q ss_pred CCceeeeeEecCCCCeEEEEEcCCCCccCcccCcccccccCCCCeEEcCCCCCCC-CC-C------------chhccCCC
Q 038037 29 DCCSWDGVHCDKNTGHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNS-SE-I------------PPEIINLL 94 (798)
Q Consensus 29 ~~~~w~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~-~~-l------------~~~~~~l~ 94 (798)
=|++|.++.. ...+.+++..+..... ...+..+++|++|+++++.... .. . +.....++
T Consensus 33 vck~W~~~~~----~~~~~l~~~~~~~~~~---~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~ 105 (594)
T 2p1m_B 33 VCKSWYEIER----WCRRKVFIGNCYAVSP---ATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYT 105 (594)
T ss_dssp SCHHHHHHHH----HHCCEEEESSTTSSCH---HHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCT
T ss_pred HHHHHHHhhh----hhceEEeeccccccCH---HHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCC
Confidence 3556776621 1234556655432211 1256778999999998875211 00 1 11234577
Q ss_pred CCcEEEccCCCCCCCCchhhh-cCCCCcEEEccCCCCCCCccccCCCchHHHHhcCCCCCEEEccCCccCCCCchhcc--
Q 038037 95 RLSYLNLSGASLSGQIPSEIL-EFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLA-- 171 (798)
Q Consensus 95 ~L~~L~Ls~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-- 171 (798)
+|++|+|++|.+++..+..+. .+++|++|++++|. .+....++.....+++|++|++++|.+.+..+..+.
T Consensus 106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~------~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~ 179 (594)
T 2p1m_B 106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE------GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHF 179 (594)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE------EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGS
T ss_pred CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC------CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHH
Confidence 888888888877655555554 57788888887773 111123555566777888888877776554433332
Q ss_pred --CCCCCCEEeccccccCccCccc----ccCCCCCcEEEccCCCCCCccchhccCCCCCCEEecCC
Q 038037 172 --NLSSLSFVSLRNCELEGRILSS----FGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSA 231 (798)
Q Consensus 172 --~l~~L~~L~l~~~~l~~~~~~~----~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 231 (798)
.+++|++|++++|. ..+.... +..+++|++|++++|.-....+..+..+++|++|+++.
T Consensus 180 ~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~ 244 (594)
T 2p1m_B 180 PDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGG 244 (594)
T ss_dssp CTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSB
T ss_pred hhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEccccc
Confidence 44566666666664 1111111 22345666666665522112444445555566555443
No 69
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=9.2e-24 Score=214.22 Aligned_cols=202 Identities=23% Similarity=0.277 Sum_probs=166.6
Q ss_pred CCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeC
Q 038037 538 TLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDL 617 (798)
Q Consensus 538 ~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L 617 (798)
..++++++++.++. +|..+ +.++++|++++|+++++.+..|.++++|++|++++|.++.+.+..|.++++|++|++
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCCc-cCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 57788999888884 55433 246899999999998887778889999999999999998777777888999999999
Q ss_pred CCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCChhhhhcchhchhcccccccc
Q 038037 618 GNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRY 697 (798)
Q Consensus 618 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~~~~~ 697 (798)
++|+++...+..|..+++|++|++++|+++++.+..+ ..+++|+.|++++|.++ .+|...|..
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~-~~~~~~~~~-------------- 155 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVF--DSLTKLTYLSLGYNELQ-SLPKGVFDK-------------- 155 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCC-CCCTTTTTT--------------
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHh--CcCcCCCEEECCCCcCC-ccCHhHccC--------------
Confidence 9999988777788889999999999999988765543 67889999999999887 344332211
Q ss_pred ccCCCCCCCCccccchhccccceeeeccCcccccCCccCceeEEEcCCCcccccCchhhhcccCCCeEeCcCCccccCCC
Q 038037 698 LQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIP 777 (798)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 777 (798)
.+.|+.|++++|+++++.+..|..+++|++|+|++|+++++.+
T Consensus 156 -------------------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (270)
T 2o6q_A 156 -------------------------------------LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE 198 (270)
T ss_dssp -------------------------------------CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred -------------------------------------CcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCH
Confidence 4678899999999998888888999999999999999998888
Q ss_pred ccccCCCCCCeEeCCCCcCC
Q 038037 778 SCLGNLTNLESLDLSNNRFF 797 (798)
Q Consensus 778 ~~~~~l~~L~~L~Ls~N~l~ 797 (798)
..|..+++|+.|+|++|+++
T Consensus 199 ~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 199 GAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTTTCTTCCEEECCSSCBC
T ss_pred HHhccccCCCEEEecCCCee
Confidence 88889999999999999875
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=4.9e-26 Score=236.22 Aligned_cols=249 Identities=24% Similarity=0.230 Sum_probs=168.3
Q ss_pred ccccCCCCeEEcCCCCCCCCCCchhccCCCCCcEEEccCCCCC-CCCchhhh-------cCCCCcEEEccCCCCCCCccc
Q 038037 65 LFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLS-GQIPSEIL-------EFSNLVSLDLSLNDGPGGRLE 136 (798)
Q Consensus 65 l~~~~~L~~L~L~~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~-~~~~~~~~-------~l~~L~~L~l~~~~~~~~~~~ 136 (798)
+...++|++|++++|.+ . +|..+... |++|++++|.+. ..+|..+. .+++|++|++++|.+..
T Consensus 39 ~~~~~~L~~l~l~~n~l-~--~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~---- 109 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE-A--DLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTG---- 109 (312)
T ss_dssp EEEEEECTTHHHHCCTT-C--CCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBS----
T ss_pred EccCCCceeEeeccccc-c--cHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccc----
Confidence 44556677777777766 2 55555543 666777776663 34555444 56777777777776321
Q ss_pred cCCCchHHHH--hcCCCCCEEEccCCccCCCCchhccCC-----CCCCEEeccccccCccCcccccCCCCCcEEEccCCC
Q 038037 137 LQKPNLANLV--EKLSNLETLDLGDASIRSTIPHNLANL-----SSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNE 209 (798)
Q Consensus 137 ~~~~~l~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~ 209 (798)
.++..+ ..+++|++|++++|.+.+. |..++.+ ++|++|++++|.+.+..+..|+.+++|++|++++|+
T Consensus 110 ----~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 184 (312)
T 1wwl_A 110 ----TAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNP 184 (312)
T ss_dssp ----CCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCT
T ss_pred ----hhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCC
Confidence 122222 5677777777777777665 5666655 778888888888777777777788888888888887
Q ss_pred CCCc--cchhc--cCCCCCCEEecCCCcCCC---cccccccCCCCCCEEECcCCcCCCCCc-cccccCCCCceeecCCCC
Q 038037 210 LRGE--LLVSI--GNLHSLKELDLSANILSS---ELPTSIGNLSSLKKLDLSQNRFFSELP-TSIGNLGSLKVLDLSRNG 281 (798)
Q Consensus 210 i~~~--~~~~~--~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~ 281 (798)
+.+. .+..+ ..+++|++|++++|.+++ .....+..+++|++|++++|++.+..| ..+..+++|++|++++|+
T Consensus 185 l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~ 264 (312)
T 1wwl_A 185 ELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG 264 (312)
T ss_dssp TCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC
T ss_pred cCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc
Confidence 6543 22333 677888888888888773 222334567888888888888876654 455667888777777777
Q ss_pred cceEecCCccccccCCccccCCCCCCEEEcCCCCccccCCCCcCCCCCCcEEeccCccCcC
Q 038037 282 LFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSG 342 (798)
Q Consensus 282 l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 342 (798)
++.+ |..+. ++|++|++++|.+.+. |. +..+++|++|++++|++++
T Consensus 265 l~~i-----------p~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 265 LKQV-----------PKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CSSC-----------CSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred cChh-----------hhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 6533 33333 7888888888888665 55 8888999999999998875
No 71
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=3e-25 Score=230.87 Aligned_cols=260 Identities=21% Similarity=0.195 Sum_probs=166.8
Q ss_pred CeEEEEEcCCCCccCcccCcccccccCCCCeEEcCCCCCCCCCCchhccCCCCCcEEEccCCCCCCCCchhhhcCCCCcE
Q 038037 43 GHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVS 122 (798)
Q Consensus 43 ~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~ 122 (798)
..++..+++.+.+...... .+..+++|++|++++|.+... .|..+..+++|++|++++|.+++..+ +..+++|++
T Consensus 10 ~~l~i~~ls~~~l~~~~~~--~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~ 84 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALAS--LRQSAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRT 84 (317)
T ss_dssp TEEEEESCCTTTHHHHHHH--HHTTGGGCSEEECTTSCCCCC-CHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCE
T ss_pred CceeEeeccccchhhhHHH--HhccCCCCCEEECcCCccCcC-CHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCE
Confidence 3456666666665433322 445667888888888887764 45677888888888888888764333 777888888
Q ss_pred EEccCCCCCCCccccCCCchHHHHhcCCCCCEEEccCCccCCCCchhccCCCCCCEEeccccccCccCcccccCCCCCcE
Q 038037 123 LDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLH 202 (798)
Q Consensus 123 L~l~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~ 202 (798)
|++++|.+.. +...++|++|++++|.+.+..+. .+++|++|++++|.+++..+..+..+++|++
T Consensus 85 L~Ls~n~l~~-------------l~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 148 (317)
T 3o53_A 85 LDLNNNYVQE-------------LLVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQY 148 (317)
T ss_dssp EECCSSEEEE-------------EEECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEE
T ss_pred EECcCCcccc-------------ccCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCE
Confidence 8888876211 22346777777777777654433 2466777777777777666666777777777
Q ss_pred EEccCCCCCCccchhcc-CCCCCCEEecCCCcCCCcccccccCCCCCCEEECcCCcCCCCCccccccCCCCceeecCCCC
Q 038037 203 LDLSLNELRGELLVSIG-NLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNG 281 (798)
Q Consensus 203 L~Ls~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~ 281 (798)
|++++|.+.+..+..+. .+++|++|++++|.+++. + ....+++|++|++++|++.+. |..+..+++|++|++++|+
T Consensus 149 L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~ 225 (317)
T 3o53_A 149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNK 225 (317)
T ss_dssp EECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSC
T ss_pred EECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCc
Confidence 77777777765555553 567777777777776644 2 222466777777777776543 3336666677666666666
Q ss_pred cceEecCCccccccCCccccCCCCCCEEEcCCCCcc-ccCCCCcCCCCCCcEEeccC
Q 038037 282 LFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFW-GKVPHSIGNFTRLQLLYLTF 337 (798)
Q Consensus 282 l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~-~~~~~~~~~l~~L~~L~l~~ 337 (798)
++.+ |..+..+++|+.|++++|.+. +..+.++..+++|+.+++++
T Consensus 226 l~~l-----------~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 226 LVLI-----------EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp CCEE-----------CTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred ccch-----------hhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence 6543 334555666666666666665 44555556666666666653
No 72
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=1.1e-24 Score=226.58 Aligned_cols=237 Identities=22% Similarity=0.183 Sum_probs=176.0
Q ss_pred ccCccEEeeCCCCCCCcc-hhhhCCCCccEEECCCCcccCCCCcccccccCcccceeeCCCCccccccCCCCCCCCcEEe
Q 038037 420 SQKFRYVGLRSCNLTEFP-NFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFD 498 (798)
Q Consensus 420 ~~~L~~L~l~~~~l~~l~-~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~ 498 (798)
.++|++|++++|+++.++ ..+..+++|++|++++|.+++..+ +. .+++|++|++++|+++.++..
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~--~l~~L~~L~Ls~n~l~~l~~~---------- 98 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LE--SLSTLRTLDLNNNYVQELLVG---------- 98 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ET--TCTTCCEEECCSSEEEEEEEC----------
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hh--hcCCCCEEECcCCccccccCC----------
Confidence 456777777777777665 467777777777777777765443 22 567777777777777655432
Q ss_pred ccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCcccccc
Q 038037 499 FSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTI 578 (798)
Q Consensus 499 l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~ 578 (798)
+.++.+++++|++++..+.. +++|++|++++|++++..+..+..++ +|++|++++|.+++..
T Consensus 99 --------------~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 99 --------------PSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRS-RVQYLDLKLNEIDTVN 160 (317)
T ss_dssp --------------TTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGS-SEEEEECTTSCCCEEE
T ss_pred --------------CCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccC-CCCEEECCCCCCCccc
Confidence 34555555555555444433 57799999999999887777787777 7999999999998877
Q ss_pred cccc-ccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcC
Q 038037 579 PDTF-IKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDC 657 (798)
Q Consensus 579 ~~~~-~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 657 (798)
+..+ ..+++|++|++++|.+++.. ....+++|++|++++|+++++.+ .|..+++|+.|++++|+++.+.+ .+.
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~~l~~---~~~ 234 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIEK---ALR 234 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEECT---TCC
T ss_pred HHHHhhccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCcccchhh---Hhh
Confidence 7766 47899999999999998653 23458999999999999986544 58889999999999999987633 236
Q ss_pred CCCcccEEEccCCcCcCCCChhhhhcchhchhccccc
Q 038037 658 GFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTE 694 (798)
Q Consensus 658 ~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~~ 694 (798)
.+++|+.|++++|++.+..+..++..+..++.+.+..
T Consensus 235 ~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp CCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred cCCCCCEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence 7889999999999998555566777777777766553
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=2.5e-24 Score=236.87 Aligned_cols=217 Identities=23% Similarity=0.174 Sum_probs=137.5
Q ss_pred ccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEE
Q 038037 513 PETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVID 592 (798)
Q Consensus 513 ~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 592 (798)
+.++.+++++|.+++..|..|..+++|++|+|++|.+++..| +..++ +|++|++++|.|+++.+ .++|++|+
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~-~L~~L~Ls~N~l~~l~~-----~~~L~~L~ 105 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLS-TLRTLDLNNNYVQELLV-----GPSIETLH 105 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCT-TCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCC-CCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence 355555566666665556666677777777777777765544 55555 57777777777664332 26677777
Q ss_pred cCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcC
Q 038037 593 LSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRF 672 (798)
Q Consensus 593 Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l 672 (798)
+++|.+++..+. .+++|++|+|++|++++..|..|..+++|+.|+|++|.++++.+..+. ..+++|+.|++++|.+
T Consensus 106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA-ASSDTLEHLNLQYNFI 181 (487)
T ss_dssp CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGG-GGTTTCCEEECTTSCC
T ss_pred CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHh-hhCCcccEEecCCCcc
Confidence 777777655443 245677777777777766666666677777777777777665443321 2456777777777766
Q ss_pred cCCCChhhhhcchhchhccccccccccCCCCCCCCccccchhccccceeeeccCcccccCCccCceeEEEcCCCcccccC
Q 038037 673 TGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVI 752 (798)
Q Consensus 673 ~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~ 752 (798)
++. |.. ..++.|+.|+|++|.|++++
T Consensus 182 ~~~-~~~-----------------------------------------------------~~l~~L~~L~Ls~N~l~~~~ 207 (487)
T 3oja_A 182 YDV-KGQ-----------------------------------------------------VVFAKLKTLDLSSNKLAFMG 207 (487)
T ss_dssp CEE-ECC-----------------------------------------------------CCCTTCCEEECCSSCCCEEC
T ss_pred ccc-ccc-----------------------------------------------------ccCCCCCEEECCCCCCCCCC
Confidence 532 100 01356777777777777655
Q ss_pred chhhhcccCCCeEeCcCCccccCCCccccCCCCCCeEeCCCCcCC
Q 038037 753 PTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFF 797 (798)
Q Consensus 753 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 797 (798)
|. +..+++|+.|+|++|.+++ +|..+..+++|+.|++++|+++
T Consensus 208 ~~-~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 208 PE-FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp GG-GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred Hh-HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence 43 6777777777777777775 4555677777777777777765
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=1.1e-22 Score=206.12 Aligned_cols=206 Identities=23% Similarity=0.234 Sum_probs=165.0
Q ss_pred CccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCcccccccCcccceeeCCCCccccccCCCCCCCCcEEeccC
Q 038037 422 KFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSS 501 (798)
Q Consensus 422 ~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~ 501 (798)
..+.+++++++++.+|..+. ++++.|++++|.++...+..+. .+++|++|++++|.++.
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~----------------- 75 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFH--RLTKLRLLYLNDNKLQT----------------- 75 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSS--SCTTCCEEECCSSCCSC-----------------
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhc--CCCCCCEEECCCCccCe-----------------
Confidence 34556666666666665432 5677777777777655544444 56667777766666553
Q ss_pred CccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccc
Q 038037 502 NNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDT 581 (798)
Q Consensus 502 n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~ 581 (798)
..+..|..+++|++|++++|.+++..+..+..++ +|++|++++|.+++..+..
T Consensus 76 --------------------------i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~ 128 (270)
T 2o6q_A 76 --------------------------LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLV-NLAELRLDRNQLKSLPPRV 128 (270)
T ss_dssp --------------------------CCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCS-SCCEEECCSSCCCCCCTTT
T ss_pred --------------------------eChhhhcCCCCCCEEECCCCcCCcCCHhHccccc-CCCEEECCCCccCeeCHHH
Confidence 2334567788999999999999977777777777 7999999999999888888
Q ss_pred cccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCc
Q 038037 582 FIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSK 661 (798)
Q Consensus 582 ~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~ 661 (798)
|..+++|++|++++|.+++..+..|..+++|++|++++|+++.+.+..|..+++|+.|++++|+++++.+..+ ..+++
T Consensus 129 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~ 206 (270)
T 2o6q_A 129 FDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAF--DSLEK 206 (270)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTT
T ss_pred hCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHh--ccccC
Confidence 9999999999999999998777779999999999999999998888889999999999999999998765543 67899
Q ss_pred ccEEEccCCcCcCCCC
Q 038037 662 LHIIDLSNNRFTGKLP 677 (798)
Q Consensus 662 L~~L~ls~N~l~~~~p 677 (798)
|+.|++++|++.+.++
T Consensus 207 L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 207 LKMLQLQENPWDCTCN 222 (270)
T ss_dssp CCEEECCSSCBCCSSS
T ss_pred CCEEEecCCCeeCCCc
Confidence 9999999999998776
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=1e-22 Score=207.99 Aligned_cols=204 Identities=22% Similarity=0.259 Sum_probs=172.1
Q ss_pred cccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCC
Q 038037 532 WICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSK 611 (798)
Q Consensus 532 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~ 611 (798)
.+.+++++++++++++.++. +|..+. +.+++|++++|.+++..+..|.++++|++|++++|.++++.+. ..+++
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~-ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~ 78 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTA-LPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPV 78 (290)
T ss_dssp EEECSTTCCEEECTTSCCSS-CCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTT
T ss_pred cccccCCccEEECCCCCCCc-CCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCc
Confidence 35678899999999999984 444432 4799999999999988888999999999999999999965443 78899
Q ss_pred CcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCChhhhhcchhchhcc
Q 038037 612 LEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVN 691 (798)
Q Consensus 612 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~ 691 (798)
|++|++++|+++ .+|..+..+++|+.|++++|+++++.+..+ ..+++|+.|++++|+++ .+|...|..
T Consensus 79 L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~--~~l~~L~~L~L~~N~l~-~~~~~~~~~-------- 146 (290)
T 1p9a_G 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGAL--RGLGELQELYLKGNELK-TLPPGLLTP-------- 146 (290)
T ss_dssp CCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTT--TTCTTCCEEECTTSCCC-CCCTTTTTT--------
T ss_pred CCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHH--cCCCCCCEEECCCCCCC-ccChhhccc--------
Confidence 999999999998 567788999999999999999998865544 78899999999999998 444432211
Q ss_pred ccccccccCCCCCCCCccccchhccccceeeeccCcccccCCccCceeEEEcCCCcccccCchhhhcccCCCeEeCcCCc
Q 038037 692 TTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNN 771 (798)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 771 (798)
.+.|+.|+|++|+|+++.+..|..+++|+.|+|++|+
T Consensus 147 -------------------------------------------l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~ 183 (290)
T 1p9a_G 147 -------------------------------------------TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183 (290)
T ss_dssp -------------------------------------------CTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred -------------------------------------------ccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCc
Confidence 4678999999999998888889999999999999999
Q ss_pred cccCCCccccCCCCCCeEeCCCCcCC
Q 038037 772 LQGHIPSCLGNLTNLESLDLSNNRFF 797 (798)
Q Consensus 772 l~~~~p~~~~~l~~L~~L~Ls~N~l~ 797 (798)
++. +|..+..+++|+.|+|++|++.
T Consensus 184 l~~-ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 184 LYT-IPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCC-CCTTTTTTCCCSEEECCSCCBC
T ss_pred CCc-cChhhcccccCCeEEeCCCCcc
Confidence 995 5666777889999999999985
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=1.9e-23 Score=229.93 Aligned_cols=235 Identities=22% Similarity=0.185 Sum_probs=166.2
Q ss_pred ccCccEEeeCCCCCCCcc-hhhhCCCCccEEECCCCcccCCCCcccccccCcccceeeCCCCccccccCCCCCCCCcEEe
Q 038037 420 SQKFRYVGLRSCNLTEFP-NFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFD 498 (798)
Q Consensus 420 ~~~L~~L~l~~~~l~~l~-~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~ 498 (798)
+++|++|++++|.++.++ ..+..+++|++|++++|.+++..| +. .+++|++|++++|.++.++..
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~--~l~~L~~L~Ls~N~l~~l~~~---------- 98 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LE--SLSTLRTLDLNNNYVQELLVG---------- 98 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CT--TCTTCCEEECCSSEEEEEEEC----------
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cc--cCCCCCEEEecCCcCCCCCCC----------
Confidence 345666666666666553 456666666666666666654443 22 556666666666666554432
Q ss_pred ccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCcccccc
Q 038037 499 FSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTI 578 (798)
Q Consensus 499 l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~ 578 (798)
+.++.+++++|.+++..+. .+++|++|++++|.+++..|..+..++ +|++|++++|.+++..
T Consensus 99 --------------~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~ 160 (487)
T 3oja_A 99 --------------PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRS-RVQYLDLKLNEIDTVN 160 (487)
T ss_dssp --------------TTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGS-SEEEEECTTSCCCEEE
T ss_pred --------------CCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCC-CCCEEECCCCCCCCcC
Confidence 4555555555655555443 356788899999998888787787777 6999999999988877
Q ss_pred ccccc-cCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcC
Q 038037 579 PDTFI-KESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDC 657 (798)
Q Consensus 579 ~~~~~-~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 657 (798)
|..|. .+++|++|+|++|.+++..+ +..+++|++|+|++|+++++.| .|..+++|+.|+|++|.++++++ .+.
T Consensus 161 ~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~lp~---~l~ 234 (487)
T 3oja_A 161 FAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIEK---ALR 234 (487)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEECT---TCC
T ss_pred hHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcccch---hhc
Confidence 77775 68899999999999886633 3458899999999999986554 48888999999999999987633 235
Q ss_pred CCCcccEEEccCCcCcCCCChhhhhcchhchhccc
Q 038037 658 GFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNT 692 (798)
Q Consensus 658 ~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~ 692 (798)
.+++|+.|++++|++.+..+..++..+..+..+..
T Consensus 235 ~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp CCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEec
Confidence 67889999999999875444555666666655544
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=1.9e-22 Score=205.59 Aligned_cols=158 Identities=22% Similarity=0.233 Sum_probs=130.7
Q ss_pred EEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccc-cccccccCCCccEEEcCC
Q 038037 517 LYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGT-IPDTFIKESRLGVIDLSH 595 (798)
Q Consensus 517 ~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~ 595 (798)
.+++++|.+++..+..|..+++|++|++++|.+++..+..+..++ +|++|++++|.+++. .|..|.++++|++|++++
T Consensus 80 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~ 158 (276)
T 2z62_A 80 TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK-TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158 (276)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCT-TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS
T ss_pred EEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCC-CCCEEECcCCccceecCchhhccCCCCCEEECCC
Confidence 333333444445566788899999999999999987776788887 799999999999875 488999999999999999
Q ss_pred CcccccCCccccCCCCCc----EEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCc
Q 038037 596 NLFQGRIPRSLVNCSKLE----FLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNR 671 (798)
Q Consensus 596 N~i~~~~~~~~~~l~~L~----~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~ 671 (798)
|++++..+..|..+++|+ +|++++|+++++.+..+.. .+|+.|++++|+++++.+.. +..+++|+.|++++|+
T Consensus 159 N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGI--FDRLTSLQKIWLHTNP 235 (276)
T ss_dssp SCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTT--TTTCCSCCEEECCSSC
T ss_pred CCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhH--hcccccccEEEccCCc
Confidence 999988777887777777 8999999999777766654 48999999999999886543 3678999999999999
Q ss_pred CcCCCCh
Q 038037 672 FTGKLPS 678 (798)
Q Consensus 672 l~~~~p~ 678 (798)
++|.+|.
T Consensus 236 ~~c~c~~ 242 (276)
T 2z62_A 236 WDCSCPR 242 (276)
T ss_dssp BCCCTTT
T ss_pred ccccCCc
Confidence 9998874
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=3.1e-22 Score=204.50 Aligned_cols=209 Identities=29% Similarity=0.287 Sum_probs=155.2
Q ss_pred CccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCcccccccCcccceeeCCCCccccccCCCCCCCCcEEeccC
Q 038037 422 KFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSS 501 (798)
Q Consensus 422 ~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~ 501 (798)
+++.+++++++++.+|..+. +.++.|++++|.+++..+..+. .+++|+.|++++|.++.++.
T Consensus 11 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~-------------- 72 (290)
T 1p9a_G 11 SHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLM--PYTRLTQLNLDRAELTKLQV-------------- 72 (290)
T ss_dssp TCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGT--TCTTCCEEECTTSCCCEEEC--------------
T ss_pred CccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhh--cCCCCCEEECCCCccCcccC--------------
Confidence 34444444555555554332 4666677777766655555444 56666666666666554321
Q ss_pred CccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccc
Q 038037 502 NNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDT 581 (798)
Q Consensus 502 n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~ 581 (798)
...+++|++|++++|.++ .+|..+..++ +|++|++++|+++++.+..
T Consensus 73 -------------------------------~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~-~L~~L~l~~N~l~~l~~~~ 119 (290)
T 1p9a_G 73 -------------------------------DGTLPVLGTLDLSHNQLQ-SLPLLGQTLP-ALTVLDVSFNRLTSLPLGA 119 (290)
T ss_dssp -------------------------------CSCCTTCCEEECCSSCCS-SCCCCTTTCT-TCCEEECCSSCCCCCCSST
T ss_pred -------------------------------CCCCCcCCEEECCCCcCC-cCchhhccCC-CCCEEECCCCcCcccCHHH
Confidence 134677888888888887 4566667776 6888999999988887888
Q ss_pred cccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCc
Q 038037 582 FIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSK 661 (798)
Q Consensus 582 ~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~ 661 (798)
|.++++|++|++++|++++..+..|..+++|+.|+|++|+++.+.+..|..+++|+.|+|++|+++.+.+.. ....+
T Consensus 120 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~---~~~~~ 196 (290)
T 1p9a_G 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF---FGSHL 196 (290)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTT---TTTCC
T ss_pred HcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhh---ccccc
Confidence 999999999999999999887888889999999999999999877778889999999999999998764433 45678
Q ss_pred ccEEEccCCcCcCCCChhhhhcc
Q 038037 662 LHIIDLSNNRFTGKLPSKSFLCW 684 (798)
Q Consensus 662 L~~L~ls~N~l~~~~p~~~~~~~ 684 (798)
|+.+++++|++.|.+...++..|
T Consensus 197 L~~l~L~~Np~~C~c~~~~l~~w 219 (290)
T 1p9a_G 197 LPFAFLHGNPWLCNCEILYFRRW 219 (290)
T ss_dssp CSEEECCSCCBCCSGGGHHHHHH
T ss_pred CCeEEeCCCCccCcCccHHHHHH
Confidence 99999999999887765555443
No 79
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=1.9e-22 Score=200.69 Aligned_cols=198 Identities=18% Similarity=0.256 Sum_probs=164.5
Q ss_pred CCCCEEEeeCcccccccChhhhccccccceeecCCCc-cccccccccccCCCccEEEcCC-CcccccCCccccCCCCCcE
Q 038037 537 NTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNN-FFGTIPDTFIKESRLGVIDLSH-NLFQGRIPRSLVNCSKLEF 614 (798)
Q Consensus 537 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~-N~i~~~~~~~~~~l~~L~~ 614 (798)
++|++|++++|+++++.+..|..++ +|++|++++|+ ++++.+.+|.++++|++|++++ |+++.+.+..|.++++|++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~-~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLP-NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCT-TCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CcccEEEEeCCcceEECHHHccCCC-CCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 3788889998888877777787777 69999999987 8877777899999999999998 9999877788899999999
Q ss_pred EeCCCCcCCccCCcccCCCCCCC---EEEccCc-ccccccCCCCCcCCCCccc-EEEccCCcCcCCCChhhhhcchhchh
Q 038037 615 LDLGNNQISDTFPSWLGTLPNLN---VLILRSN-TFYGIIKEPRTDCGFSKLH-IIDLSNNRFTGKLPSKSFLCWDAMKI 689 (798)
Q Consensus 615 L~L~~N~i~~~~~~~~~~l~~L~---~L~L~~N-~l~~~~~~~~~~~~~~~L~-~L~ls~N~l~~~~p~~~~~~~~~l~~ 689 (798)
|++++|++++ +|. |..+++|+ .|++++| .++++.+..+ ..+++|+ .|++++|+++ .+|...|.
T Consensus 110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~--~~l~~L~~~L~l~~n~l~-~i~~~~~~------- 177 (239)
T 2xwt_C 110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAF--QGLCNETLTLKLYNNGFT-SVQGYAFN------- 177 (239)
T ss_dssp EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTT--TTTBSSEEEEECCSCCCC-EECTTTTT-------
T ss_pred EeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccc--cchhcceeEEEcCCCCCc-ccCHhhcC-------
Confidence 9999999986 454 88888888 9999999 8888865544 6788999 9999999987 55543221
Q ss_pred ccccccccccCCCCCCCCccccchhccccceeeeccCcccccCCccCceeEEEcCCCc-ccccCchhhhcc-cCCCeEeC
Q 038037 690 VNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNR-FDGVIPTSIANL-KGLQVLNL 767 (798)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~-l~~~~~~~~~~l-~~L~~L~L 767 (798)
.+.|+.|++++|+ ++++.+..|.++ ++|+.|++
T Consensus 178 ---------------------------------------------~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l 212 (239)
T 2xwt_C 178 ---------------------------------------------GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDV 212 (239)
T ss_dssp ---------------------------------------------TCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEEC
T ss_pred ---------------------------------------------CCCCCEEEcCCCCCcccCCHHHhhccccCCcEEEC
Confidence 2468999999995 998888999999 99999999
Q ss_pred cCCccccCCCccccCCCCCCeEeCCCCc
Q 038037 768 DNNNLQGHIPSCLGNLTNLESLDLSNNR 795 (798)
Q Consensus 768 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 795 (798)
++|+++++++. .+++|+.|+++++.
T Consensus 213 ~~N~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 213 SQTSVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp TTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred CCCccccCChh---HhccCceeeccCcc
Confidence 99999976554 57889999999763
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=1.1e-22 Score=206.46 Aligned_cols=141 Identities=23% Similarity=0.242 Sum_probs=75.1
Q ss_pred ccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCC
Q 038037 533 ICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKL 612 (798)
Q Consensus 533 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L 612 (798)
+..+++|++|++++|.+++..+..+..++ +|++|++++|++++..+..|.++++|++|++++|.+++..+..|..+++|
T Consensus 81 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 159 (272)
T 3rfs_A 81 LKELTNLTYLILTGNQLQSLPNGVFDKLT-NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL 159 (272)
T ss_dssp GTTCTTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred hcCCCCCCEEECCCCccCccChhHhcCCc-CCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccC
Confidence 44455555555555555554444444444 45555555555555555555555555555555555554444445555555
Q ss_pred cEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCC
Q 038037 613 EFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKL 676 (798)
Q Consensus 613 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~ 676 (798)
++|++++|++++..+..|..+++|+.|++++|+++++.+..+ ..+++|+.|++++|++.|.+
T Consensus 160 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~~~~ 221 (272)
T 3rfs_A 160 TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVF--DRLTSLQYIWLHDNPWDCTC 221 (272)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCBCCCT
T ss_pred CEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHH--hCCcCCCEEEccCCCccccC
Confidence 555555555555544445555555555555555555433222 44555555555555555433
No 81
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=1.9e-21 Score=194.81 Aligned_cols=130 Identities=22% Similarity=0.233 Sum_probs=83.0
Q ss_pred CCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeC
Q 038037 538 TLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDL 617 (798)
Q Consensus 538 ~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L 617 (798)
..++++++++.++ .+|..+. ..++.|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP---ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC---TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCCCCcc-ccCCCCC---CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 4566777777776 3343322 35777777777777666666667777777777777777666666666777777777
Q ss_pred CCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCc
Q 038037 618 GNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFT 673 (798)
Q Consensus 618 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~ 673 (798)
++|++++..+..|..+++|++|+|++|+++++.+..+ ..+++|+.|++++|+++
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~ 144 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVF--DRLTKLKELRLNTNQLQ 144 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHh--ccCCcccEEECcCCcCC
Confidence 7777766666666666666666666666665543322 44566666666666655
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=2.5e-22 Score=203.75 Aligned_cols=197 Identities=24% Similarity=0.219 Sum_probs=108.3
Q ss_pred CCCCeEEcCCCCCCCCCCchhccCCCCCcEEEccCCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCCchHHHHhc
Q 038037 69 VHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEK 148 (798)
Q Consensus 69 ~~L~~L~L~~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~ 148 (798)
..+..+++..+.+... .....+++|++|++++|.+. .++ .+..+++|++|++++|.+.. + ..+..
T Consensus 19 ~~l~~l~l~~~~~~~~---~~~~~l~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~---------~-~~l~~ 83 (272)
T 3rfs_A 19 AETIKANLKKKSVTDA---VTQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHD---------I-SALKE 83 (272)
T ss_dssp HHHHHHHHTCSCTTSE---ECHHHHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCC---------C-GGGTT
T ss_pred HHHHHHHhcCcccccc---cccccccceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCC---------c-hhhcC
Confidence 3444445555444331 23445666666666666654 333 35666666666666665211 1 23455
Q ss_pred CCCCCEEEccCCccCCCCchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCEEe
Q 038037 149 LSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELD 228 (798)
Q Consensus 149 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 228 (798)
+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 84 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 163 (272)
T 3rfs_A 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELD 163 (272)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEE
Confidence 55666666666666555555556666666666666666655555555666666666666666555444555555666666
Q ss_pred cCCCcCCCcccccccCCCCCCEEECcCCcCCCCCccccccCCCCceeecCCC
Q 038037 229 LSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRN 280 (798)
Q Consensus 229 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n 280 (798)
+++|.+++..+..+..+++|++|++++|++.+..+..+..+++|++|++++|
T Consensus 164 l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 164 LSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCC
Confidence 6666555544444555555555555555555544444555555544444444
No 83
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=2.3e-21 Score=194.21 Aligned_cols=184 Identities=21% Similarity=0.197 Sum_probs=157.0
Q ss_pred EEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccc
Q 038037 496 TFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFF 575 (798)
Q Consensus 496 ~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~ 575 (798)
.++++++.++..+...++.++.+++++|.+.+..+..|..+++|++|++++|.+++..+..+..++ +|++|++++|+++
T Consensus 18 ~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~ 96 (251)
T 3m19_A 18 EVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT-ELGTLGLANNQLA 96 (251)
T ss_dssp EEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECTTSCCC
T ss_pred EEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCC-cCCEEECCCCccc
Confidence 344444444444444456777778888888888888899999999999999999998888888887 7999999999999
Q ss_pred cccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCC
Q 038037 576 GTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRT 655 (798)
Q Consensus 576 ~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 655 (798)
+..+..|..+++|++|++++|++++..+..|..+++|++|+|++|+++++.+..|..+++|+.|+|++|+++++.+..+
T Consensus 97 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~- 175 (251)
T 3m19_A 97 SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF- 175 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT-
T ss_pred ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHH-
Confidence 9888899999999999999999998888888999999999999999998888889999999999999999998866544
Q ss_pred cCCCCcccEEEccCCcCcCC-CChhhhh
Q 038037 656 DCGFSKLHIIDLSNNRFTGK-LPSKSFL 682 (798)
Q Consensus 656 ~~~~~~L~~L~ls~N~l~~~-~p~~~~~ 682 (798)
..+++|+.|++++|++.+. +...++.
T Consensus 176 -~~l~~L~~L~l~~N~~~c~~~~~~~l~ 202 (251)
T 3m19_A 176 -DRLGKLQTITLFGNQFDCSRCEILYLS 202 (251)
T ss_dssp -TTCTTCCEEECCSCCBCTTSTTHHHHH
T ss_pred -hCCCCCCEEEeeCCceeCCccccHHHH
Confidence 6789999999999999986 3333333
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=7.3e-22 Score=196.38 Aligned_cols=206 Identities=18% Similarity=0.196 Sum_probs=172.8
Q ss_pred cCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcc-cccccChhhhccccccceeecCC-Cccccccccc
Q 038037 504 LQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNS-LSGLLPQCLGNFSDELAVLDLQG-NNFFGTIPDT 581 (798)
Q Consensus 504 l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~~~~~L~~L~L~~-n~i~~~~~~~ 581 (798)
++..+. .++.++.+++++|++++..+..|..+++|++|++++|+ ++++.+..|..++ +|++|++++ |+++++.+..
T Consensus 23 l~~ip~-~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~-~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 23 IQRIPS-LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLS-KVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp CSSCCC-CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCT-TCCEEEEEEETTCCEECTTS
T ss_pred ccccCC-CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCc-CCcEEECCCCCCeeEcCHHH
Confidence 444444 56688889999999998888899999999999999997 8877777888887 799999999 9999888889
Q ss_pred cccCCCccEEEcCCCcccccCCccccCCCCCc---EEeCCCC-cCCccCCcccCCCCCCC-EEEccCcccccccCCCCCc
Q 038037 582 FIKESRLGVIDLSHNLFQGRIPRSLVNCSKLE---FLDLGNN-QISDTFPSWLGTLPNLN-VLILRSNTFYGIIKEPRTD 656 (798)
Q Consensus 582 ~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~---~L~L~~N-~i~~~~~~~~~~l~~L~-~L~L~~N~l~~~~~~~~~~ 656 (798)
|.++++|++|++++|++++ +|. |..+++|+ +|++++| +++.+.+..|..+++|+ .|++++|+++.+.+..+
T Consensus 101 f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~-- 176 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAF-- 176 (239)
T ss_dssp EECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTT--
T ss_pred hCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhc--
Confidence 9999999999999999996 565 88889998 9999999 99988888899999999 99999999997765443
Q ss_pred CCCCcccEEEccCCc-CcCCCChhhhhcchhchhccccccccccCCCCCCCCccccchhccccceeeeccCcccccCCcc
Q 038037 657 CGFSKLHIIDLSNNR-FTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIP 735 (798)
Q Consensus 657 ~~~~~L~~L~ls~N~-l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (798)
.. ++|+.|++++|+ ++ .+|...|.. .
T Consensus 177 ~~-~~L~~L~L~~n~~l~-~i~~~~~~~---------------------------------------------------l 203 (239)
T 2xwt_C 177 NG-TKLDAVYLNKNKYLT-VIDKDAFGG---------------------------------------------------V 203 (239)
T ss_dssp TT-CEEEEEECTTCTTCC-EECTTTTTT---------------------------------------------------C
T ss_pred CC-CCCCEEEcCCCCCcc-cCCHHHhhc---------------------------------------------------c
Confidence 33 799999999996 87 444432221 3
Q ss_pred -CceeEEEcCCCcccccCchhhhcccCCCeEeCcCCc
Q 038037 736 -DILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNN 771 (798)
Q Consensus 736 -~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 771 (798)
+.|+.|++++|+|+++.+. .+++|+.|+++++.
T Consensus 204 ~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 204 YSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp SBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred ccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence 5789999999999977654 67899999998874
No 85
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=2.3e-23 Score=221.01 Aligned_cols=112 Identities=21% Similarity=0.202 Sum_probs=57.9
Q ss_pred CCCCEEEeeCcccccccChhhhc----cccccceeecCCCcccccccccccc-----CCCccEEEcCCCcccccCC----
Q 038037 537 NTLKNLVLSHNSLSGLLPQCLGN----FSDELAVLDLQGNNFFGTIPDTFIK-----ESRLGVIDLSHNLFQGRIP---- 603 (798)
Q Consensus 537 ~~L~~L~Ls~n~i~~~~~~~~~~----~~~~L~~L~L~~n~i~~~~~~~~~~-----l~~L~~L~Ls~N~i~~~~~---- 603 (798)
++|++|++++|.+++..+..+.. .+++|++|++++|++++..+..+.. .++|++|++++|.+++..+
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 56666666666666554443332 2125666666666665554433322 2466666666666653222
Q ss_pred ccccCCC-CCcEEeCCCCcCCccCCcc----cCCC-CCCCEEEccCccccc
Q 038037 604 RSLVNCS-KLEFLDLGNNQISDTFPSW----LGTL-PNLNVLILRSNTFYG 648 (798)
Q Consensus 604 ~~~~~l~-~L~~L~L~~N~i~~~~~~~----~~~l-~~L~~L~L~~N~l~~ 648 (798)
..+..++ +|++|+|++|++++..+.. +..+ ++|++|+|++|.+.+
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence 2223333 5666666666665444322 2233 356666666666554
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=2.2e-21 Score=200.40 Aligned_cols=146 Identities=24% Similarity=0.320 Sum_probs=65.8
Q ss_pred ccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEE
Q 038037 513 PETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVID 592 (798)
Q Consensus 513 ~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 592 (798)
+.++.+++++|.+... + .+..+++|++|++++|.+++..+ +..++ +|++|++++|++++. ..+..+++|++|+
T Consensus 41 ~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~-~L~~L~L~~n~l~~~--~~~~~l~~L~~L~ 113 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLT-KITELELSGNPLKNV--SAIAGLQSIKTLD 113 (308)
T ss_dssp HTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCC-SCCEEECCSCCCSCC--GGGTTCTTCCEEE
T ss_pred CCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCC-CCCEEEccCCcCCCc--hhhcCCCCCCEEE
Confidence 3444455555444432 2 34444455555555555443322 34443 355555555554432 1344444555555
Q ss_pred cCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcC
Q 038037 593 LSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRF 672 (798)
Q Consensus 593 Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l 672 (798)
+++|++++. + .+..+++|++|++++|++++..+ +..+++|+.|++++|.++++.+ +..+++|+.|++++|++
T Consensus 114 l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 114 LTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP----LANLSKLTTLKADDNKI 185 (308)
T ss_dssp CTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSCC
T ss_pred CCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh----hcCCCCCCEEECCCCcc
Confidence 555554432 1 14444555555555555443322 4444455555555554444322 23444455555555544
Q ss_pred c
Q 038037 673 T 673 (798)
Q Consensus 673 ~ 673 (798)
+
T Consensus 186 ~ 186 (308)
T 1h6u_A 186 S 186 (308)
T ss_dssp C
T ss_pred C
Confidence 4
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=4.2e-22 Score=206.47 Aligned_cols=207 Identities=21% Similarity=0.255 Sum_probs=159.5
Q ss_pred CCCCCEEEeeCcccccccChhh--hccccccceeecCCCccccccc----cccccCCCccEEEcCCCcccccCCccccCC
Q 038037 536 LNTLKNLVLSHNSLSGLLPQCL--GNFSDELAVLDLQGNNFFGTIP----DTFIKESRLGVIDLSHNLFQGRIPRSLVNC 609 (798)
Q Consensus 536 l~~L~~L~Ls~n~i~~~~~~~~--~~~~~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l 609 (798)
+++|++|++++|.+++..|..+ ..++ +|++|++++|.+++..+ ..+..+++|++|++++|++++..+..|..+
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~-~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGL-ALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCB-CCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCC-CCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 4668899999998888888776 6666 79999999998886444 344578899999999999988888889999
Q ss_pred CCCcEEeCCCCcCCcc---C-CcccCCCCCCCEEEccCcccccccCCCCC-cCCCCcccEEEccCCcCcCCCChhhhhcc
Q 038037 610 SKLEFLDLGNNQISDT---F-PSWLGTLPNLNVLILRSNTFYGIIKEPRT-DCGFSKLHIIDLSNNRFTGKLPSKSFLCW 684 (798)
Q Consensus 610 ~~L~~L~L~~N~i~~~---~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~~~~~~L~~L~ls~N~l~~~~p~~~~~~~ 684 (798)
++|++|+|++|++.+. . +..+..+++|++|+|++|+++.+...... +..+++|++|++++|++++..|......
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~- 247 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRC- 247 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSC-
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhc-
Confidence 9999999999987642 2 23457888999999999998755322111 2457899999999999986656432100
Q ss_pred hhchhccccccccccCCCCCCCCccccchhccccceeeeccCcccccCCccCceeEEEcCCCcccccCchhhhcccCCCe
Q 038037 685 DAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQV 764 (798)
Q Consensus 685 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 764 (798)
..++.|+.|+|++|+|+.+ |..+. ++|++
T Consensus 248 ------------------------------------------------~~~~~L~~L~Ls~N~l~~l-p~~~~--~~L~~ 276 (310)
T 4glp_A 248 ------------------------------------------------MWSSALNSLNLSFAGLEQV-PKGLP--AKLRV 276 (310)
T ss_dssp ------------------------------------------------CCCTTCCCEECCSSCCCSC-CSCCC--SCCSC
T ss_pred ------------------------------------------------cCcCcCCEEECCCCCCCch-hhhhc--CCCCE
Confidence 0136789999999999954 55553 79999
Q ss_pred EeCcCCccccCCCccccCCCCCCeEeCCCCcCC
Q 038037 765 LNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFF 797 (798)
Q Consensus 765 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 797 (798)
|+|++|+|+++ |. +..+++|+.|+|++|+|+
T Consensus 277 L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 277 LDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp EECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred EECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 99999999976 43 788999999999999986
No 88
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.85 E-value=3.2e-21 Score=203.33 Aligned_cols=242 Identities=16% Similarity=0.162 Sum_probs=188.5
Q ss_pred CcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccC-hhhhccccccceeecCCC
Q 038037 494 GKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLP-QCLGNFSDELAVLDLQGN 572 (798)
Q Consensus 494 l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~~~~~L~~L~L~~n 572 (798)
.+++++++++++.++...++.++.+++++|+|+.+.+.+|.++++|++|+|++|++.+.++ ..|.+++.-++.+.+++|
T Consensus 11 ~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 11 NRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp TTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred CCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 3566777777777666667789999999999998777889999999999999999876554 567777743445777889
Q ss_pred ccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCC-CcCCccCCcccCCCC-CCCEEEccCccccccc
Q 038037 573 NFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGN-NQISDTFPSWLGTLP-NLNVLILRSNTFYGII 650 (798)
Q Consensus 573 ~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~-~L~~L~L~~N~l~~~~ 650 (798)
+++.+.|++|.++++|++|++++|+++...+..+....++..|++.+ +++..+.+..|..+. .++.|++++|+|+.+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~ 170 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH 170 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEEC
T ss_pred cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCC
Confidence 99999899999999999999999999977777777788899999965 678877777888875 6899999999999886
Q ss_pred CCCCCcCCCCcccEEEccC-CcCcCCCChhhhhcchhchhccccccccccCCCCCCCCccccchhccccceeeeccCccc
Q 038037 651 KEPRTDCGFSKLHIIDLSN-NRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMM 729 (798)
Q Consensus 651 ~~~~~~~~~~~L~~L~ls~-N~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (798)
+..+ ...+|+.+++++ |.++ .+|...|..
T Consensus 171 ~~~f---~~~~L~~l~l~~~n~l~-~i~~~~f~~---------------------------------------------- 200 (350)
T 4ay9_X 171 NSAF---NGTQLDELNLSDNNNLE-ELPNDVFHG---------------------------------------------- 200 (350)
T ss_dssp TTSS---TTEEEEEEECTTCTTCC-CCCTTTTTT----------------------------------------------
T ss_pred hhhc---cccchhHHhhccCCccc-CCCHHHhcc----------------------------------------------
Confidence 5544 457899999986 5554 777654432
Q ss_pred ccCCccCceeEEEcCCCcccccCchhhhcccCCCeEeCcCCccccCCCccccCCCCCCeEeCCCC
Q 038037 730 TYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNN 794 (798)
Q Consensus 730 ~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 794 (798)
.+.|+.|||++|+|+.+.+..|.+ |+.|.+.++.--..+| .+..+++|+.++++++
T Consensus 201 -----l~~L~~LdLs~N~l~~lp~~~~~~---L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 201 -----ASGPVILDISRTRIHSLPSYGLEN---LKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp -----EECCSEEECTTSCCCCCCSSSCTT---CCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred -----CcccchhhcCCCCcCccChhhhcc---chHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 367899999999999887766655 4455444443223455 3889999999999754
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=2.9e-23 Score=222.67 Aligned_cols=261 Identities=20% Similarity=0.201 Sum_probs=177.8
Q ss_pred eeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCcccc--cccCcccceeeCCCCccccccCCCCCCCCcEEeccCCcc
Q 038037 427 GLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLL--DPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNL 504 (798)
Q Consensus 427 ~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~--~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~n~l 504 (798)
.+....+..++..+..+++|+.|++++|.+....+..+. ...+++|++|++++|.+..+.
T Consensus 15 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~------------------ 76 (386)
T 2ca6_A 15 AITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVK------------------ 76 (386)
T ss_dssp SCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCG------------------
T ss_pred CCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccc------------------
Confidence 333344455677788889999999999988765433321 115677788877776554322
Q ss_pred CCCCCCCCccceEEEeecceeecccC-------ccccCCCCCCEEEeeCccccc----ccChhhhccccccceeecCCCc
Q 038037 505 QGPLPVPPPETILYLVSNNSLTGEIP-------SWICNLNTLKNLVLSHNSLSG----LLPQCLGNFSDELAVLDLQGNN 573 (798)
Q Consensus 505 ~~~~~~~~~~l~~l~l~~n~l~~~~~-------~~~~~l~~L~~L~Ls~n~i~~----~~~~~~~~~~~~L~~L~L~~n~ 573 (798)
+.+| ..+..+++|++|+|++|.+++ .++..+..++ +|++|++++|.
T Consensus 77 ----------------------~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~-~L~~L~L~~n~ 133 (386)
T 2ca6_A 77 ----------------------DEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHT-PLEHLYLHNNG 133 (386)
T ss_dssp ----------------------GGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCT-TCCEEECCSSC
T ss_pred ----------------------cchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCC-CCCEEECcCCC
Confidence 1223 334788999999999999987 3566777776 79999999999
Q ss_pred cccccccccc----cC---------CCccEEEcCCCccc-ccCC---ccccCCCCCcEEeCCCCcCCc-----cCCcccC
Q 038037 574 FFGTIPDTFI----KE---------SRLGVIDLSHNLFQ-GRIP---RSLVNCSKLEFLDLGNNQISD-----TFPSWLG 631 (798)
Q Consensus 574 i~~~~~~~~~----~l---------~~L~~L~Ls~N~i~-~~~~---~~~~~l~~L~~L~L~~N~i~~-----~~~~~~~ 631 (798)
++...+..+. .+ ++|++|++++|+++ ...+ ..+..+++|++|++++|+++. ..+..+.
T Consensus 134 l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~ 213 (386)
T 2ca6_A 134 LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA 213 (386)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGG
T ss_pred CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhh
Confidence 8754444433 33 88999999999887 3334 356678899999999998873 3444778
Q ss_pred CCCCCCEEEccCcccc----cccCCCCCcCCCCcccEEEccCCcCcCCCChhhhhcchhchhccccccccccCCCCCCCC
Q 038037 632 TLPNLNVLILRSNTFY----GIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQ 707 (798)
Q Consensus 632 ~l~~L~~L~L~~N~l~----~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 707 (798)
.+++|+.|+|++|.++ ...+. .+..+++|+.|++++|++++........ .+.
T Consensus 214 ~~~~L~~L~Ls~n~l~~~g~~~l~~--~l~~~~~L~~L~L~~n~i~~~~~~~l~~---~l~------------------- 269 (386)
T 2ca6_A 214 YCQELKVLDLQDNTFTHLGSSALAI--ALKSWPNLRELGLNDCLLSARGAAAVVD---AFS------------------- 269 (386)
T ss_dssp GCTTCCEEECCSSCCHHHHHHHHHH--HGGGCTTCCEEECTTCCCCHHHHHHHHH---HHH-------------------
T ss_pred cCCCccEEECcCCCCCcHHHHHHHH--HHccCCCcCEEECCCCCCchhhHHHHHH---HHh-------------------
Confidence 8889999999999885 22222 2356788888999888876321100000 000
Q ss_pred ccccchhccccceeeeccCcccccCCccCceeEEEcCCCcccc----cCchhh-hcccCCCeEeCcCCccccCC
Q 038037 708 VSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDG----VIPTSI-ANLKGLQVLNLDNNNLQGHI 776 (798)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~----~~~~~~-~~l~~L~~L~Ls~N~l~~~~ 776 (798)
..-.+.|+.|+|++|.|++ .+|..+ .++++|++|+|++|.+++..
T Consensus 270 ------------------------~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 270 ------------------------KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp ------------------------TCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred ------------------------hccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 0003568888888888887 366666 66788888888888888665
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=1.5e-22 Score=213.09 Aligned_cols=237 Identities=21% Similarity=0.253 Sum_probs=144.7
Q ss_pred CCCCceeeeeEecCCCCeEEEEEcCCCCccCcccCccccccc--CCCCeEEcCCCCCCCCCCchhccCCCCCcEEEccCC
Q 038037 27 DVDCCSWDGVHCDKNTGHVIKLDLSNSCLFGSINSSSSLFKL--VHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGA 104 (798)
Q Consensus 27 ~~~~~~w~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~--~~L~~L~L~~~~~~~~~l~~~~~~l~~L~~L~Ls~~ 104 (798)
+.-|..|.++.++ +..+++++++++.+.+. .+..+ +++++|+++++.+... +..+..+++|++|++++|
T Consensus 33 ~~vc~~W~~~~~~--~~~~~~l~l~~~~~~~~-----~~~~~~~~~l~~L~l~~n~l~~~--~~~~~~~~~L~~L~L~~~ 103 (336)
T 2ast_B 33 SGVCKRWYRLASD--ESLWQTLDLTGKNLHPD-----VTGRLLSQGVIAFRCPRSFMDQP--LAEHFSPFRVQHMDLSNS 103 (336)
T ss_dssp TSSCHHHHHHHTC--STTSSEEECTTCBCCHH-----HHHHHHHTTCSEEECTTCEECSC--CCSCCCCBCCCEEECTTC
T ss_pred HHHHHHHHHHhcC--chhheeeccccccCCHH-----HHHhhhhccceEEEcCCcccccc--chhhccCCCCCEEEccCC
Confidence 3456678877654 33567888888766522 45555 7788888888877653 333556778888888887
Q ss_pred CCCCC-CchhhhcCCCCcEEEccCCCCCCCccccCCCchHHHHhcCCCCCEEEccCC-ccCCC-CchhccCCCCCCEEec
Q 038037 105 SLSGQ-IPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDA-SIRST-IPHNLANLSSLSFVSL 181 (798)
Q Consensus 105 ~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~-~~~~~-~~~~~~~l~~L~~L~l 181 (798)
.+.+. ++..+..+++|++|++++|.+. ...+..+..+++|++|++++| .+++. .+..+..+++|++|++
T Consensus 104 ~l~~~~~~~~~~~~~~L~~L~L~~~~l~--------~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l 175 (336)
T 2ast_B 104 VIEVSTLHGILSQCSKLQNLSLEGLRLS--------DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNL 175 (336)
T ss_dssp EECHHHHHHHHTTBCCCSEEECTTCBCC--------HHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEEC
T ss_pred CcCHHHHHHHHhhCCCCCEEeCcCcccC--------HHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcC
Confidence 76644 6666777777777777777521 234556666777777777777 45432 3444566677777777
Q ss_pred ccc-ccCcc-CcccccCCC-CCcEEEccCC--CCC-CccchhccCCCCCCEEecCCCc-CCCcccccccCCCCCCEEECc
Q 038037 182 RNC-ELEGR-ILSSFGNLS-KLLHLDLSLN--ELR-GELLVSIGNLHSLKELDLSANI-LSSELPTSIGNLSSLKKLDLS 254 (798)
Q Consensus 182 ~~~-~l~~~-~~~~~~~l~-~L~~L~Ls~n--~i~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~ 254 (798)
++| .+++. .+..+..++ +|++|++++| .++ ...+..+..+++|++|++++|. +++..+..+..+++|++|+++
T Consensus 176 ~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~ 255 (336)
T 2ast_B 176 SWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLS 255 (336)
T ss_dssp CCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred CCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCC
Confidence 777 66543 344456666 6777777666 333 2334445556666666666666 554555556666666666666
Q ss_pred CCc-CCCCCccccccCCCCceeecCCC
Q 038037 255 QNR-FFSELPTSIGNLGSLKVLDLSRN 280 (798)
Q Consensus 255 ~n~-i~~~~~~~~~~l~~L~~L~l~~n 280 (798)
+|. +.......+..+++|++|++++|
T Consensus 256 ~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 256 RCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 663 21111123455555555555544
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=4.3e-21 Score=198.87 Aligned_cols=188 Identities=20% Similarity=0.152 Sum_probs=101.5
Q ss_pred ccCCCCeEEcCCCCCCCCCCchh--ccCCCCCcEEEccCCCCCCCCchhh--hcCCCCcEEEccCCCCCCCccccCCCch
Q 038037 67 KLVHLEWLNLAFNDFNSSEIPPE--IINLLRLSYLNLSGASLSGQIPSEI--LEFSNLVSLDLSLNDGPGGRLELQKPNL 142 (798)
Q Consensus 67 ~~~~L~~L~L~~~~~~~~~l~~~--~~~l~~L~~L~Ls~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~l 142 (798)
+...++.+.+.++.+....+... +..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.... ..+
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~-----~~~ 136 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGR-----SWL 136 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTT-----SSH
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchh-----hhh
Confidence 33456777777666543211111 1234568888888888777777766 67777777777777633210 111
Q ss_pred H-HHHhcCCCCCEEEccCCccCCCCchhccCCCCCCEEeccccccCcc---C-cccccCCCCCcEEEccCCCCCCccch-
Q 038037 143 A-NLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGR---I-LSSFGNLSKLLHLDLSLNELRGELLV- 216 (798)
Q Consensus 143 ~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~---~-~~~~~~l~~L~~L~Ls~n~i~~~~~~- 216 (798)
+ ..+..+++|++|++++|.+.+..+..++.+++|++|++++|.+.+. . ...+..+++|++|++++|.++.....
T Consensus 137 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~ 216 (310)
T 4glp_A 137 AELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVC 216 (310)
T ss_dssp HHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHH
T ss_pred HHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHH
Confidence 1 2334566666666666666655556666666666666666655421 1 11124555566666666655421111
Q ss_pred --hccCCCCCCEEecCCCcCCCcccccccCC---CCCCEEECcCCcCC
Q 038037 217 --SIGNLHSLKELDLSANILSSELPTSIGNL---SSLKKLDLSQNRFF 259 (798)
Q Consensus 217 --~~~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~n~i~ 259 (798)
.+..+++|++|++++|.+++..|..+..+ ++|++|++++|+++
T Consensus 217 ~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 217 AALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE 264 (310)
T ss_dssp HHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC
T ss_pred HHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC
Confidence 13445555555555555554444444433 35555555555553
No 92
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.84 E-value=7.9e-22 Score=209.17 Aligned_cols=270 Identities=17% Similarity=0.188 Sum_probs=122.6
Q ss_pred EEcCCCCCCCCCCchhccCCCCCcEEEccCCCCCCCCc----hhhhcCC-CCcEEEccCCCCCCCccccCCCchHHHHhc
Q 038037 74 LNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIP----SEILEFS-NLVSLDLSLNDGPGGRLELQKPNLANLVEK 148 (798)
Q Consensus 74 L~L~~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~ 148 (798)
++++.+.++.. +|..+....+|++|+|++|.+++..+ ..+..++ +|++|++++|.+..... ..+...+..
T Consensus 3 ~~ls~n~~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~----~~l~~~l~~ 77 (362)
T 3goz_A 3 YKLTLHPGSNP-VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNS----DELVQILAA 77 (362)
T ss_dssp EECCCCTTCCH-HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCH----HHHHHHHHT
T ss_pred cccccccchHH-HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHH----HHHHHHHhc
Confidence 34555555443 33333444445556665555554433 4444455 55555555554211100 011122222
Q ss_pred C-CCCCEEEccCCccCCCCchhccCCCCCCEEeccccccCccCcccccCC-CCCcEEEccCCCCCCccchhc----cC-C
Q 038037 149 L-SNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNL-SKLLHLDLSLNELRGELLVSI----GN-L 221 (798)
Q Consensus 149 l-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~----~~-l 221 (798)
. ++|++|++++|.+.+..+..+... +..+ ++|++|++++|.+.+..+..+ .. .
T Consensus 78 ~~~~L~~L~Ls~n~l~~~~~~~l~~~--------------------l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~ 137 (362)
T 3goz_A 78 IPANVTSLNLSGNFLSYKSSDELVKT--------------------LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLP 137 (362)
T ss_dssp SCTTCCEEECCSSCGGGSCHHHHHHH--------------------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSC
T ss_pred cCCCccEEECcCCcCChHHHHHHHHH--------------------HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCC
Confidence 2 455555555555444333322211 2222 444444444444443333222 12 2
Q ss_pred CCCCEEecCCCcCCCcc----cccccCCC-CCCEEECcCCcCCCCCcccc----ccC-CCCceeecCCCCcceEecCCcc
Q 038037 222 HSLKELDLSANILSSEL----PTSIGNLS-SLKKLDLSQNRFFSELPTSI----GNL-GSLKVLDLSRNGLFELHLSFNK 291 (798)
Q Consensus 222 ~~L~~L~L~~n~l~~~~----~~~~~~l~-~L~~L~L~~n~i~~~~~~~~----~~l-~~L~~L~l~~n~l~~l~l~~~~ 291 (798)
++|++|++++|.+++.. +..+...+ +|++|++++|+++...+..+ ..+ ++|++|++++|.+.....
T Consensus 138 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~---- 213 (362)
T 3goz_A 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSY---- 213 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH----
T ss_pred CceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHH----
Confidence 35555555555544322 22223333 55555555555544433222 222 355555555554432100
Q ss_pred ccccCCccccC-CCCCCEEEcCCCCccccCC----CCcCCCCCCcEEeccCccCcCCcchhcccccCCcccccCCCChhh
Q 038037 292 FSGEFPWSTRN-FSSLKILDLRSCSFWGKVP----HSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSL 366 (798)
Q Consensus 292 ~~~~~~~~~~~-l~~L~~L~L~~n~~~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~ 366 (798)
..++..+.. .++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+.....+..+ +..+
T Consensus 214 --~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l-----------~~~~ 280 (362)
T 3goz_A 214 --AELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKAL-----------GAAF 280 (362)
T ss_dssp --HHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHH-----------HTTS
T ss_pred --HHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHH-----------HHHh
Confidence 001222222 2466666666666644322 334566778888888777554443322211 1145
Q ss_pred hcCCCCcEEeccCCcccCc
Q 038037 367 RNLTQLIVLSLSQNSYRGM 385 (798)
Q Consensus 367 ~~l~~L~~L~l~~n~l~~~ 385 (798)
..+++|+.|++++|.+...
T Consensus 281 ~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 281 PNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp TTCCEEEEECTTSCBCCGG
T ss_pred ccCCceEEEecCCCcCCCc
Confidence 5666777777777776654
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=5.7e-20 Score=189.75 Aligned_cols=194 Identities=21% Similarity=0.273 Sum_probs=119.0
Q ss_pred cccccCCCCeEEcCCCCCCCCCCchhccCCCCCcEEEccCCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCCchH
Q 038037 64 SLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLA 143 (798)
Q Consensus 64 ~l~~~~~L~~L~L~~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~ 143 (798)
....+++|++|+++++.+.. ++ .+..+++|++|++++|.+. .++. +..+++|++|++++|.+.. +
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~--l~-~~~~l~~L~~L~L~~n~i~-~~~~-~~~l~~L~~L~L~~n~l~~---------~- 100 (308)
T 1h6u_A 36 TQADLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQIT-DLAP-LKNLTKITELELSGNPLKN---------V- 100 (308)
T ss_dssp CHHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCCSCCEEECCSCCCSC---------C-
T ss_pred cHHHcCCcCEEEeeCCCccC--ch-hhhccCCCCEEEccCCcCC-CChh-HccCCCCCEEEccCCcCCC---------c-
Confidence 44567777788877777665 33 4677777777777777776 3444 7777777777777776321 1
Q ss_pred HHHhcCCCCCEEEccCCccCCCCchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCC
Q 038037 144 NLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHS 223 (798)
Q Consensus 144 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 223 (798)
..+..+++|++|++++|.+.+.. .+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+..+ +..+++
T Consensus 101 ~~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~ 174 (308)
T 1h6u_A 101 SAIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSK 174 (308)
T ss_dssp GGGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTT
T ss_pred hhhcCCCCCCEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCC
Confidence 23566667777777776665432 25666666666666666654433 5666666666666666664332 556666
Q ss_pred CCEEecCCCcCCCcccccccCCCCCCEEECcCCcCCCCCccccccCCCCceeecCCCCc
Q 038037 224 LKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGL 282 (798)
Q Consensus 224 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l 282 (798)
|++|++++|.+++..+ +..+++|++|++++|++.+.. .+..+++|++|++++|++
T Consensus 175 L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 175 LTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp CCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEE
T ss_pred CCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCee
Confidence 6666666666654322 555666666666666664333 255555565555555544
No 94
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.82 E-value=4.9e-21 Score=201.46 Aligned_cols=255 Identities=20% Similarity=0.234 Sum_probs=202.1
Q ss_pred CCCeEEcCCCCCCCCCCchhccCC--CCCcEEEccCCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCCchHHHHh
Q 038037 70 HLEWLNLAFNDFNSSEIPPEIINL--LRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVE 147 (798)
Q Consensus 70 ~L~~L~L~~~~~~~~~l~~~~~~l--~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~ 147 (798)
.++.++++++.+. +..+..+ +++++|++++|.+.+..+. +..+++|++|++++|.+. ...++..+.
T Consensus 48 ~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~-------~~~~~~~~~ 115 (336)
T 2ast_B 48 LWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIE-------VSTLHGILS 115 (336)
T ss_dssp TSSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEEC-------HHHHHHHHT
T ss_pred hheeeccccccCC----HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcC-------HHHHHHHHh
Confidence 4889999998775 4567777 8999999999999866555 668999999999999621 123777899
Q ss_pred cCCCCCEEEccCCccCCCCchhccCCCCCCEEecccc-ccCcc-CcccccCCCCCcEEEccCC-CCCCc-cchhccCCC-
Q 038037 148 KLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNC-ELEGR-ILSSFGNLSKLLHLDLSLN-ELRGE-LLVSIGNLH- 222 (798)
Q Consensus 148 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~~-~~~~~~~l~~L~~L~Ls~n-~i~~~-~~~~~~~l~- 222 (798)
.+++|++|++++|.+.+..+..++.+++|++|++++| .+++. .+..+..+++|++|++++| .+++. .+..+..++
T Consensus 116 ~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~ 195 (336)
T 2ast_B 116 QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE 195 (336)
T ss_dssp TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCT
T ss_pred hCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhccc
Confidence 9999999999999988778888999999999999999 57653 4556888999999999999 88864 466688899
Q ss_pred CCCEEecCCC--cCC-CcccccccCCCCCCEEECcCCc-CCCCCccccccCCCCceeecCCCCcceEecCCccccccCCc
Q 038037 223 SLKELDLSAN--ILS-SELPTSIGNLSSLKKLDLSQNR-FFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPW 298 (798)
Q Consensus 223 ~L~~L~L~~n--~l~-~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~ 298 (798)
+|++|++++| .++ ..++..+..+++|++|++++|. ++...+..+..+++|++|++++|. . +......
T Consensus 196 ~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~--~-------~~~~~~~ 266 (336)
T 2ast_B 196 TITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY--D-------IIPETLL 266 (336)
T ss_dssp TCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT--T-------CCGGGGG
T ss_pred CCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC--C-------CCHHHHH
Confidence 9999999999 455 3456677889999999999999 666777788999999999888885 1 1111123
Q ss_pred cccCCCCCCEEEcCCCCccccCCCCcCCC-CCCcEEeccCccCcCCcchhcc
Q 038037 299 STRNFSSLKILDLRSCSFWGKVPHSIGNF-TRLQLLYLTFNNFSGDLLGSIG 349 (798)
Q Consensus 299 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~ 349 (798)
.+..+++|+.|++++| +.. ..+..+ ..++.|++++|.+++..+..++
T Consensus 267 ~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 267 ELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp GGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred HHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCccc
Confidence 5677999999999998 322 233333 3477778999999987776443
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=4.3e-20 Score=194.69 Aligned_cols=219 Identities=17% Similarity=0.195 Sum_probs=171.6
Q ss_pred ceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccc-cccccccCCCccE-EE
Q 038037 515 TILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGT-IPDTFIKESRLGV-ID 592 (798)
Q Consensus 515 l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~-L~ 592 (798)
.+.++.++++++ .+|..+ .+++++|+|++|+|+.+.+.+|.+++ +|++|+|++|++.+. .+++|.+++++++ +.
T Consensus 11 ~~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~-~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~ 86 (350)
T 4ay9_X 11 NRVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFG-DLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86 (350)
T ss_dssp TTEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCT-TCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred CCEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCC-CCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence 356788888888 456555 35799999999999977677888887 799999999998654 4467889988765 66
Q ss_pred cCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccC-cccccccCCCCCcCCC-CcccEEEccCC
Q 038037 593 LSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRS-NTFYGIIKEPRTDCGF-SKLHIIDLSNN 670 (798)
Q Consensus 593 Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~~~~-~~L~~L~ls~N 670 (798)
+++|+++.+.|..|..+++|++|++++|+++...+..+....++..|++.+ +.+..+.+..+ ..+ ..++.|++++|
T Consensus 87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f--~~~~~~l~~L~L~~N 164 (350)
T 4ay9_X 87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF--VGLSFESVILWLNKN 164 (350)
T ss_dssp EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSS--TTSBSSCEEEECCSS
T ss_pred ccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccch--hhcchhhhhhccccc
Confidence 777999988888999999999999999999877777777777888898865 56777655443 333 46888999999
Q ss_pred cCcCCCChhhhhcchhchhccccccccccCCCCCCCCccccchhccccceeeeccCcccccCCccCceeEEEcC-CCccc
Q 038037 671 RFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILS-SNRFD 749 (798)
Q Consensus 671 ~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls-~N~l~ 749 (798)
+|+ .+|...|. ...++.++++ +|.++
T Consensus 165 ~i~-~i~~~~f~----------------------------------------------------~~~L~~l~l~~~n~l~ 191 (350)
T 4ay9_X 165 GIQ-EIHNSAFN----------------------------------------------------GTQLDELNLSDNNNLE 191 (350)
T ss_dssp CCC-EECTTSST----------------------------------------------------TEEEEEEECTTCTTCC
T ss_pred ccc-CCChhhcc----------------------------------------------------ccchhHHhhccCCccc
Confidence 987 45543221 2468889997 57888
Q ss_pred ccCchhhhcccCCCeEeCcCCccccCCCccccCCCCCCeEeCC
Q 038037 750 GVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLS 792 (798)
Q Consensus 750 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 792 (798)
.+.++.|.++++|++|||++|+|+.+++..|.++++|+.+++.
T Consensus 192 ~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~~ 234 (350)
T 4ay9_X 192 ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 234 (350)
T ss_dssp CCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTCT
T ss_pred CCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhccCC
Confidence 8888899999999999999999998888777776666665553
No 96
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.82 E-value=8.9e-22 Score=211.09 Aligned_cols=251 Identities=20% Similarity=0.180 Sum_probs=124.5
Q ss_pred cccccCCCCeEEcCCCCCCCCC---CchhccCCCCCcEEEccCCC---CCCCCchhh-------hcCCCCcEEEccCCCC
Q 038037 64 SLFKLVHLEWLNLAFNDFNSSE---IPPEIINLLRLSYLNLSGAS---LSGQIPSEI-------LEFSNLVSLDLSLNDG 130 (798)
Q Consensus 64 ~l~~~~~L~~L~L~~~~~~~~~---l~~~~~~l~~L~~L~Ls~~~---~~~~~~~~~-------~~l~~L~~L~l~~~~~ 130 (798)
.+..+++|++|+|++|.+.... ++..+..+++|++|+|++|. +.+.+|..+ ..+++|++|++++|.+
T Consensus 27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 106 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106 (386)
T ss_dssp HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence 4455566666666666554320 11224455666666666543 223334333 3455555555555553
Q ss_pred CCCccccCCCchHHHHhcCCCCCEEEccCCccCCCCchhccCCCCCCEEeccccccCccCcccccCC---------CCCc
Q 038037 131 PGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNL---------SKLL 201 (798)
Q Consensus 131 ~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l---------~~L~ 201 (798)
..... ..++..+..+++|++|++++|.+....+..+... +..+ ++|+
T Consensus 107 ~~~~~----~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~--------------------l~~l~~~~~~~~~~~L~ 162 (386)
T 2ca6_A 107 GPTAQ----EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA--------------------LQELAVNKKAKNAPPLR 162 (386)
T ss_dssp CTTTH----HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHH--------------------HHHHHHHHHHHTCCCCC
T ss_pred CHHHH----HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHH--------------------HHHHhhhhhcccCCCCc
Confidence 22111 1244445555555555555555432222222111 1111 4555
Q ss_pred EEEccCCCCCC-ccc---hhccCCCCCCEEecCCCcCCC-----cccccccCCCCCCEEECcCCcCC----CCCcccccc
Q 038037 202 HLDLSLNELRG-ELL---VSIGNLHSLKELDLSANILSS-----ELPTSIGNLSSLKKLDLSQNRFF----SELPTSIGN 268 (798)
Q Consensus 202 ~L~Ls~n~i~~-~~~---~~~~~l~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~i~----~~~~~~~~~ 268 (798)
+|++++|++.. ..+ ..+..+++|++|++++|.++. ..+..+..+++|++|+|++|.++ ..+|..+..
T Consensus 163 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~ 242 (386)
T 2ca6_A 163 SIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS 242 (386)
T ss_dssp EEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG
T ss_pred EEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHcc
Confidence 55555555542 122 234445555555555555542 12224555556666666666553 334445555
Q ss_pred CCCCceeecCCCCcceEecCCccccccCCccc--cCCCCCCEEEcCCCCccc----cCCCCc-CCCCCCcEEeccCccCc
Q 038037 269 LGSLKVLDLSRNGLFELHLSFNKFSGEFPWST--RNFSSLKILDLRSCSFWG----KVPHSI-GNFTRLQLLYLTFNNFS 341 (798)
Q Consensus 269 l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~--~~l~~L~~L~L~~n~~~~----~~~~~~-~~l~~L~~L~l~~n~l~ 341 (798)
+++|++|++++|.+..... ..++..+ ..+++|++|++++|.+.. .+|..+ ..+++|++|++++|.++
T Consensus 243 ~~~L~~L~L~~n~i~~~~~------~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 243 WPNLRELGLNDCLLSARGA------AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp CTTCCEEECTTCCCCHHHH------HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred CCCcCEEECCCCCCchhhH------HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 5666555555554432100 0012233 226677777777777765 355555 45788888888888887
Q ss_pred CCc
Q 038037 342 GDL 344 (798)
Q Consensus 342 ~~~ 344 (798)
+..
T Consensus 317 ~~~ 319 (386)
T 2ca6_A 317 EED 319 (386)
T ss_dssp TTS
T ss_pred cch
Confidence 655
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=1.5e-19 Score=175.28 Aligned_cols=175 Identities=21% Similarity=0.222 Sum_probs=138.7
Q ss_pred cEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCcc
Q 038037 495 KTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNF 574 (798)
Q Consensus 495 ~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i 574 (798)
+.++++++.++..+...++.++.+++++|++++..+..|..+++|++|++++|++++..+..|..++ +|++|++++|++
T Consensus 10 ~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l 88 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLT-SLTYLNLSTNQL 88 (208)
T ss_dssp TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCC
T ss_pred CEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCC-CcCEEECCCCcC
Confidence 4556666666655555566777778888888777777788888899999999888877666677776 688899988888
Q ss_pred ccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCC
Q 038037 575 FGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPR 654 (798)
Q Consensus 575 ~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 654 (798)
++..+..|.++++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|+.|++++|++.
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------- 161 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------- 161 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------
T ss_pred CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------
Confidence 8777777888888899999888888777777888888889999888888777777888888888888888764
Q ss_pred CcCCCCcccEEEccCCcCcCCCChh
Q 038037 655 TDCGFSKLHIIDLSNNRFTGKLPSK 679 (798)
Q Consensus 655 ~~~~~~~L~~L~ls~N~l~~~~p~~ 679 (798)
+.+++|+.|+++.|.++|.+|..
T Consensus 162 --~~~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 162 --CTCPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp --CCTTTTHHHHHHHHHCTTTBBCT
T ss_pred --cCCCCHHHHHHHHHhCCceeecc
Confidence 34567888888888888888754
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=2.2e-19 Score=174.24 Aligned_cols=109 Identities=20% Similarity=0.223 Sum_probs=52.3
Q ss_pred ccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEcc
Q 038037 563 ELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILR 642 (798)
Q Consensus 563 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~ 642 (798)
+|++|++++|+++++.+..|.++++|++|++++|+++++.+..|..+++|++|++++|++++..+..|..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 34455555555444444444445555555555555554444444445555555555555544444444455555555555
Q ss_pred CcccccccCCCCCcCCCCcccEEEccCCcCc
Q 038037 643 SNTFYGIIKEPRTDCGFSKLHIIDLSNNRFT 673 (798)
Q Consensus 643 ~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~ 673 (798)
+|+++++.+.. +..+++|+.|++++|+++
T Consensus 109 ~N~l~~~~~~~--~~~l~~L~~L~l~~N~l~ 137 (208)
T 2o6s_A 109 TNQLQSLPDGV--FDKLTQLKDLRLYQNQLK 137 (208)
T ss_dssp SSCCCCCCTTT--TTTCTTCCEEECCSSCCS
T ss_pred CCcCcccCHhH--hccCCcCCEEECCCCccc
Confidence 55554443322 134445555555555544
No 99
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.79 E-value=5.8e-19 Score=172.25 Aligned_cols=144 Identities=22% Similarity=0.245 Sum_probs=122.4
Q ss_pred CCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEe
Q 038037 537 NTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLD 616 (798)
Q Consensus 537 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~ 616 (798)
+++++|++++|.|+++.+..|..++ +|++|++++|+|+++.|..|.++++|++|+|++|+|+.+.+..|.++++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~-~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYK-KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCT-TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCC-CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEE
Confidence 5788888888888877777777776 688888888888888888899999999999999999977777788899999999
Q ss_pred CCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCChhhhhc
Q 038037 617 LGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLC 683 (798)
Q Consensus 617 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~ 683 (798)
|++|+++++.|..|..+++|+.|+|++|+++++.+..+ ..+++|+.|++++|++.+.++-.|+..
T Consensus 111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~~~c~c~l~~l~~ 175 (220)
T 2v9t_B 111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF--SPLRAIQTMHLAQNPFICDCHLKWLAD 175 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCEECSGGGHHHHH
T ss_pred CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHH--hCCCCCCEEEeCCCCcCCCCccHHHHH
Confidence 99999998888889999999999999999988866544 678899999999999998777666654
No 100
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=9.9e-19 Score=170.60 Aligned_cols=162 Identities=19% Similarity=0.177 Sum_probs=129.2
Q ss_pred EEEeecceeecccCccccCCCCCCEEEeeCcccccccC-hhhhccccccceeecCCCccccccccccccCCCccEEEcCC
Q 038037 517 LYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLP-QCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSH 595 (798)
Q Consensus 517 ~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~ 595 (798)
.+++++|.++. +|..+ ...+++|++++|.+++..+ ..|..++ +|++|++++|+|+++.+..|.++++|++|+|++
T Consensus 15 ~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~-~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 15 TVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLP-QLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp EEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCC-CCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 34444444442 34433 2356788888888887644 4466676 688889988888888888899999999999999
Q ss_pred CcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCC
Q 038037 596 NLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGK 675 (798)
Q Consensus 596 N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~ 675 (798)
|.+++..+..|.++++|++|+|++|+++++.|..|..+++|+.|+|++|+++++.+..+ ..+++|+.|++++|++.|.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF--DTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT--TTCTTCCEEECCSCCEECS
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHh--cCCCCCCEEEecCcCCcCC
Confidence 99998888889999999999999999998888899999999999999999998876654 6789999999999999988
Q ss_pred CChhhhhcc
Q 038037 676 LPSKSFLCW 684 (798)
Q Consensus 676 ~p~~~~~~~ 684 (798)
++..++..|
T Consensus 169 c~l~~l~~~ 177 (220)
T 2v70_A 169 CYLAWLGEW 177 (220)
T ss_dssp GGGHHHHHH
T ss_pred CchHHHHHH
Confidence 887666543
No 101
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=2.9e-19 Score=189.04 Aligned_cols=182 Identities=24% Similarity=0.211 Sum_probs=154.9
Q ss_pred cEEeccCCccCCCCCCCCccceEEEeecceeecccCcccc-CCCCCCEEEeeCcccccccChhhhccccccceeecCCCc
Q 038037 495 KTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWIC-NLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNN 573 (798)
Q Consensus 495 ~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~ 573 (798)
+.++++++.++..+...+..++.+++++|++++..+..|. .+++|++|+|++|+|+++.+..|..++ +|++|+|++|+
T Consensus 21 ~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~-~L~~L~Ls~N~ 99 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP-NLRYLDLSSNH 99 (361)
T ss_dssp TEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCC-CCCEEECCCCc
Confidence 5667777777766666677788899999999988888887 899999999999999988888899988 79999999999
Q ss_pred cccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCccc---CCCCCCCEEEccCccccccc
Q 038037 574 FFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWL---GTLPNLNVLILRSNTFYGII 650 (798)
Q Consensus 574 i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~---~~l~~L~~L~L~~N~l~~~~ 650 (798)
|+.+.+..|.++++|++|+|++|+|+.+.|..|.++++|++|+|++|+|+.+.+..| ..+++|+.|+|++|+++.+.
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 179 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence 999888899999999999999999998889999999999999999999997766666 57999999999999998874
Q ss_pred CCCCCcCCCCc--ccEEEccCCcCcCCCChh
Q 038037 651 KEPRTDCGFSK--LHIIDLSNNRFTGKLPSK 679 (798)
Q Consensus 651 ~~~~~~~~~~~--L~~L~ls~N~l~~~~p~~ 679 (798)
+.. +..++. ++.|++++|++.+.+.-.
T Consensus 180 ~~~--~~~l~~~~l~~l~l~~N~~~C~C~l~ 208 (361)
T 2xot_A 180 LTD--LQKLPAWVKNGLYLHNNPLECDCKLY 208 (361)
T ss_dssp HHH--HHHSCHHHHTTEECCSSCEECCHHHH
T ss_pred HHH--hhhccHhhcceEEecCCCccCCcCcH
Confidence 332 244555 488999999999876643
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=2.1e-18 Score=168.29 Aligned_cols=153 Identities=19% Similarity=0.207 Sum_probs=138.0
Q ss_pred cEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCcc
Q 038037 495 KTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNF 574 (798)
Q Consensus 495 ~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i 574 (798)
+.++++++.++.++...++.++.+++++|++++..+..|..+++|++|+|++|++++..|..|.+++ +|++|++++|+|
T Consensus 14 ~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~-~L~~L~Ls~N~l 92 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR-SLNSLVLYGNKI 92 (220)
T ss_dssp TEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCS-SCCEEECCSSCC
T ss_pred CEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCc-CCCEEECCCCcC
Confidence 4566666666666555567888888999999888888999999999999999999998899999998 799999999999
Q ss_pred ccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCccccc
Q 038037 575 FGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYG 648 (798)
Q Consensus 575 ~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~ 648 (798)
+.+.+..|.++++|++|+|++|+|+++.|..|..+++|++|+|++|+++++.+..|..+++|+.|+|++|++..
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 98888889999999999999999999989999999999999999999998888889999999999999999864
No 103
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=2e-18 Score=168.38 Aligned_cols=154 Identities=23% Similarity=0.203 Sum_probs=135.8
Q ss_pred cEEeccCCccCCCCCCCCccceEEEeecceeecccC-ccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCc
Q 038037 495 KTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIP-SWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNN 573 (798)
Q Consensus 495 ~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~ 573 (798)
+.+++++|.++.++...+..++.+++++|++++..+ ..|..+++|++|++++|.++++.+..|..++ +|++|++++|+
T Consensus 14 ~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~-~L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS-GVNEILLTSNR 92 (220)
T ss_dssp TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSC
T ss_pred CEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCC-CCCEEECCCCc
Confidence 455666666665555556667788888888887754 5688999999999999999988888899988 79999999999
Q ss_pred cccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccc
Q 038037 574 FFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGI 649 (798)
Q Consensus 574 i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~ 649 (798)
++++.+..|.++++|++|++++|+|+++.|..|..+++|++|+|++|++++..|..|..+++|+.|+|++|++...
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 9999999999999999999999999999899999999999999999999998899999999999999999998753
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.78 E-value=2.4e-18 Score=190.32 Aligned_cols=196 Identities=23% Similarity=0.304 Sum_probs=146.5
Q ss_pred cceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEc
Q 038037 514 ETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDL 593 (798)
Q Consensus 514 ~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 593 (798)
.++.+++++|.+++ +|..+ +++|++|++++|.++ .+| ..+ ++|++|++++|+|++ +|. |.+ +|++|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l-~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELP-ASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCC-TTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---ccc-CCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 67889999998887 55544 378999999999988 455 223 379999999999987 455 554 8999999
Q ss_pred CCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCc
Q 038037 594 SHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFT 673 (798)
Q Consensus 594 s~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~ 673 (798)
++|.|++ +|. .+++|+.|++++|++++ +|. .+++|+.|+|++|+++++.. + . ++|+.|++++|+|+
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~--l--~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPE--L--P--ESLEALDVSTNLLE 193 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC--C--C--TTCCEEECCSSCCS
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcch--h--h--CCCCEEECcCCCCC
Confidence 9999986 454 57889999999999886 444 56789999999999888533 3 2 78999999999887
Q ss_pred CCCChhhhhcchhchhccccccccccCCCCCCCCccccchhccccceeeeccCcccccCCccCceeEEEcCCCcccccCc
Q 038037 674 GKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIP 753 (798)
Q Consensus 674 ~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~ 753 (798)
.+|. +.. .+ ...++.|+.|+|++|+|+. +|
T Consensus 194 -~lp~--~~~--~L--------------------------------------------~~~~~~L~~L~Ls~N~l~~-lp 223 (571)
T 3cvr_A 194 -SLPA--VPV--RN--------------------------------------------HHSEETEIFFRCRENRITH-IP 223 (571)
T ss_dssp -SCCC--CC------------------------------------------------------CCEEEECCSSCCCC-CC
T ss_pred -chhh--HHH--hh--------------------------------------------hcccccceEEecCCCccee-cC
Confidence 5664 110 00 0012446899999999985 56
Q ss_pred hhhhcccCCCeEeCcCCccccCCCccccCCCC
Q 038037 754 TSIANLKGLQVLNLDNNNLQGHIPSCLGNLTN 785 (798)
Q Consensus 754 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 785 (798)
..+..+++|+.|+|++|.+++.+|..|..++.
T Consensus 224 ~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 224 ENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp GGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred HHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 67777999999999999999888888776543
No 105
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=2.3e-18 Score=182.17 Aligned_cols=127 Identities=26% Similarity=0.302 Sum_probs=64.3
Q ss_pred EEEeeCcccccccChhhhccccccceeecCCCccccccccccc-cCCCccEEEcCCCcccccCCccccCCCCCcEEeCCC
Q 038037 541 NLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFI-KESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGN 619 (798)
Q Consensus 541 ~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~ 619 (798)
.++++++.++. +|..+ +..++.|++++|+|+++.+..|. ++++|++|+|++|+|+++.+..|.++++|++|+|++
T Consensus 22 ~l~c~~~~l~~-iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 22 ILSCSKQQLPN-VPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp EEECCSSCCSS-CCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EEEeCCCCcCc-cCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 45555555542 23222 12355555555555554444454 555555555555555544444555555555555555
Q ss_pred CcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCc
Q 038037 620 NQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFT 673 (798)
Q Consensus 620 N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~ 673 (798)
|+++.+.+..|..+++|+.|+|++|+|+++.+..+ ..+++|+.|+|++|+++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~--~~l~~L~~L~L~~N~l~ 149 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAF--EDMAQLQKLYLSQNQIS 149 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSSCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHh--CCcccCCEEECCCCcCC
Confidence 55554444455555555555555555555433322 44555555555555554
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=1.1e-17 Score=164.38 Aligned_cols=154 Identities=19% Similarity=0.179 Sum_probs=89.9
Q ss_pred cceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccC
Q 038037 564 LAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRS 643 (798)
Q Consensus 564 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~ 643 (798)
-+.++++++.++.+ |..+ .++|++|++++|.|+++.|..|..+++|++|+|++|++..+.+..|..+++|+.|+|++
T Consensus 21 ~~~v~c~~~~l~~i-p~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASV-PAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCcc-CCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 44455555555433 2222 15566666666666665566666666666666666666655555566666666666666
Q ss_pred cccccccCCCCCcCCCCcccEEEccCCcCcCCCChhhhhcchhchhccccccccccCCCCCCCCccccchhccccceeee
Q 038037 644 NTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMN 723 (798)
Q Consensus 644 N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (798)
|+++++.+..+ ..+++|+.|++++|+++ .+|....
T Consensus 98 N~l~~l~~~~~--~~l~~L~~L~Ls~N~l~-~lp~~~~------------------------------------------ 132 (229)
T 3e6j_A 98 NQLTVLPSAVF--DRLVHLKELFMCCNKLT-ELPRGIE------------------------------------------ 132 (229)
T ss_dssp SCCCCCCTTTT--TTCTTCCEEECCSSCCC-SCCTTGG------------------------------------------
T ss_pred CcCCccChhHh--CcchhhCeEeccCCccc-ccCcccc------------------------------------------
Confidence 66665543322 45566666666666665 4443210
Q ss_pred ccCcccccCCccCceeEEEcCCCcccccCchhhhcccCCCeEeCcCCccccC
Q 038037 724 SKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGH 775 (798)
Q Consensus 724 ~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 775 (798)
-.+.|+.|+|++|+|+++.+..|..+++|+.|+|++|.++..
T Consensus 133 ----------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 133 ----------RLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp ----------GCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred ----------cCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 024566666666666666666667777777777777776643
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=4.9e-18 Score=173.55 Aligned_cols=175 Identities=26% Similarity=0.352 Sum_probs=127.4
Q ss_pred ccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCC
Q 038037 533 ICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKL 612 (798)
Q Consensus 533 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L 612 (798)
+..+++|++|++++|.+++. + .+..++ +|++|++++|++++..+ +..+++|++|++++|.+++. + .+..+++|
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~-~-~~~~l~-~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L 114 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV-Q-GIQYLP-NVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL-S-SLKDLKKL 114 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-TGGGCT-TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG-G-GGTTCTTC
T ss_pred hhhcCcccEEEccCCCcccC-h-hHhcCC-CCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC-h-hhccCCCC
Confidence 34577788888888888754 3 356665 68888888888886554 77888888888888888753 3 47788888
Q ss_pred cEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCChhhhhcchhchhccc
Q 038037 613 EFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNT 692 (798)
Q Consensus 613 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~ 692 (798)
++|++++|++++. ..+..+++|+.|++++|+++++. .+..+++|+.|++++|++++..| +.
T Consensus 115 ~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~L~~N~l~~~~~---l~---------- 175 (291)
T 1h6t_A 115 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDIT----VLSRLTKLDTLSLEDNQISDIVP---LA---------- 175 (291)
T ss_dssp CEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCCG----GGGGCTTCSEEECCSSCCCCCGG---GT----------
T ss_pred CEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcch----hhccCCCCCEEEccCCccccchh---hc----------
Confidence 8888888888764 45777888888888888887761 34667888888888888763221 10
Q ss_pred cccccccCCCCCCCCccccchhccccceeeeccCcccccCCccCceeEEEcCCCcccccCchhhhcccCCCeEeCcCCcc
Q 038037 693 TELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNL 772 (798)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 772 (798)
-.+.|+.|++++|.|+++. .+..+++|+.|++++|++
T Consensus 176 -----------------------------------------~l~~L~~L~L~~N~i~~l~--~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 176 -----------------------------------------GLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp -----------------------------------------TCTTCCEEECCSSCCCBCG--GGTTCTTCSEEEEEEEEE
T ss_pred -----------------------------------------CCCccCEEECCCCcCCCCh--hhccCCCCCEEECcCCcc
Confidence 0356788888888887652 377888888888888887
Q ss_pred ccCC
Q 038037 773 QGHI 776 (798)
Q Consensus 773 ~~~~ 776 (798)
+...
T Consensus 213 ~~~~ 216 (291)
T 1h6t_A 213 LNKP 216 (291)
T ss_dssp ECCC
T ss_pred cCCc
Confidence 7543
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.75 E-value=5.6e-18 Score=187.34 Aligned_cols=189 Identities=24% Similarity=0.311 Sum_probs=147.9
Q ss_pred CCcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCC
Q 038037 493 PGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGN 572 (798)
Q Consensus 493 ~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n 572 (798)
.++.+++++|.+++.+...++.++.+++++|+++ .+| ..+++|++|++++|.+++ +|. +.. +|++|++++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~---~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLPPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA---SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT---TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhHcCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc---CCCEEECCCC
Confidence 6788999999998876656788999999999998 455 347889999999999986 555 443 6999999999
Q ss_pred ccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCC
Q 038037 573 NFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKE 652 (798)
Q Consensus 573 ~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 652 (798)
+|++ +|. .+++|+.|++++|.|++ +|. .+++|++|+|++|++++ +|. |. ++|+.|+|++|.|+.+..
T Consensus 131 ~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~lp~- 197 (571)
T 3cvr_A 131 QLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESLPA- 197 (571)
T ss_dssp CCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSCCC-
T ss_pred cCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCchhh-
Confidence 9987 444 67899999999999986 454 57889999999999986 555 65 899999999999986643
Q ss_pred CCCcCCCCcc-------cEEEccCCcCcCCCChhhhhcchhchhccccccccccCCCCCCCCccccchhccccceeeecc
Q 038037 653 PRTDCGFSKL-------HIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSK 725 (798)
Q Consensus 653 ~~~~~~~~~L-------~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (798)
+ .. +| +.|++++|+|+ .+|...+.
T Consensus 198 -~--~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~------------------------------------------- 228 (571)
T 3cvr_A 198 -V--PV--RNHHSEETEIFFRCRENRIT-HIPENILS------------------------------------------- 228 (571)
T ss_dssp -C--C----------CCEEEECCSSCCC-CCCGGGGG-------------------------------------------
T ss_pred -H--HH--hhhcccccceEEecCCCcce-ecCHHHhc-------------------------------------------
Confidence 2 22 66 99999999998 56754221
Q ss_pred CcccccCCccCceeEEEcCCCcccccCchhhhcccC
Q 038037 726 GRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKG 761 (798)
Q Consensus 726 ~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~ 761 (798)
.+.|+.|+|++|.+++.+|..+..++.
T Consensus 229 ---------l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 229 ---------LDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp ---------SCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred ---------CCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 356889999999999988888877654
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=1.8e-17 Score=162.82 Aligned_cols=137 Identities=21% Similarity=0.188 Sum_probs=118.7
Q ss_pred CCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEe
Q 038037 537 NTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLD 616 (798)
Q Consensus 537 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~ 616 (798)
++|++|++++|.+++..|..|..++ +|++|++++|+|+.+.+..|.++++|++|+|++|+|+++.+..|..+++|++|+
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLI-NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEcCCCccCccCHHHhhCcc-CCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence 6788888888888888788888887 699999999998877777888999999999999999987777788999999999
Q ss_pred CCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCC
Q 038037 617 LGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLP 677 (798)
Q Consensus 617 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p 677 (798)
|++|+++ .+|..+..+++|+.|+|++|+++++.+.. +..+++|+.|++++|++.+.++
T Consensus 119 Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 119 MCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGA--FDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTT--TTTCTTCCEEECTTSCBCTTBG
T ss_pred ccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHH--HhCCCCCCEEEeeCCCccCCcc
Confidence 9999998 56778889999999999999999876543 4678999999999999998776
No 110
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=1.9e-17 Score=169.11 Aligned_cols=174 Identities=25% Similarity=0.310 Sum_probs=115.3
Q ss_pred cccccCCCCeEEcCCCCCCCCCCchhccCCCCCcEEEccCCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCCchH
Q 038037 64 SLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLA 143 (798)
Q Consensus 64 ~l~~~~~L~~L~L~~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~ 143 (798)
.+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+.. +
T Consensus 41 ~~~~l~~L~~L~l~~~~i~~--~~-~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~---------~- 105 (291)
T 1h6t_A 41 TQNELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKD---------L- 105 (291)
T ss_dssp CHHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC---------G-
T ss_pred chhhcCcccEEEccCCCccc--Ch-hHhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCCC---------C-
Confidence 45667788888888877765 33 36777888888888887763 343 7777788888888776321 2
Q ss_pred HHHhcCCCCCEEEccCCccCCCCchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCC
Q 038037 144 NLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHS 223 (798)
Q Consensus 144 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 223 (798)
+.+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+..+ +..+++
T Consensus 106 ~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~ 179 (291)
T 1h6t_A 106 SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTK 179 (291)
T ss_dssp GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTT
T ss_pred hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCc
Confidence 2366677777777777776653 3466677777777777776654 456666777777777776665443 666667
Q ss_pred CCEEecCCCcCCCcccccccCCCCCCEEECcCCcCCC
Q 038037 224 LKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFS 260 (798)
Q Consensus 224 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~ 260 (798)
|++|++++|.+++. + .+..+++|+.|++++|++..
T Consensus 180 L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 180 LQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred cCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 77777777766643 2 36666666666666666643
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=1e-17 Score=168.30 Aligned_cols=123 Identities=20% Similarity=0.255 Sum_probs=60.6
Q ss_pred CCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEe
Q 038037 537 NTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLD 616 (798)
Q Consensus 537 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~ 616 (798)
.++..+++++|.+++.. .+..++ +|++|++++|.++.+ + .+..+++|++|++++|++++..+ +..+++|++|+
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~-~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELS-GVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHT-TCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHhcCCCccccc--chhhcC-cCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 34444555555555332 233443 455555555555532 2 34555555555555555554332 55555555555
Q ss_pred CCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCc
Q 038037 617 LGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFT 673 (798)
Q Consensus 617 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~ 673 (798)
+++|++++..+ +.. ++|+.|++++|+++++. .+..+++|+.|++++|+++
T Consensus 92 L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~~----~l~~l~~L~~L~Ls~N~i~ 141 (263)
T 1xeu_A 92 VNRNRLKNLNG--IPS-ACLSRLFLDNNELRDTD----SLIHLKNLEILSIRNNKLK 141 (263)
T ss_dssp CCSSCCSCCTT--CCC-SSCCEEECCSSCCSBSG----GGTTCTTCCEEECTTSCCC
T ss_pred CCCCccCCcCc--ccc-CcccEEEccCCccCCCh----hhcCcccccEEECCCCcCC
Confidence 55555554322 122 55555555555555431 1244555555555555554
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=3.2e-17 Score=183.65 Aligned_cols=182 Identities=26% Similarity=0.352 Sum_probs=128.2
Q ss_pred ccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCC
Q 038037 533 ICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKL 612 (798)
Q Consensus 533 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L 612 (798)
+..++.|+.|++++|.+... + .+..++ +|+.|+|++|.+++..+ +..+++|+.|+|++|.+++. | .+..+++|
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l-~-~l~~l~-~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L 111 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSV-Q-GIQYLP-NVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL-S-SLKDLKKL 111 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCC-T-TGGGCT-TCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC-T-TSTTCTTC
T ss_pred hhcCCCCCEEECcCCCCCCC-h-HHccCC-CCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC-h-hhccCCCC
Confidence 34577788888888887744 3 466666 68888888888876654 77788888888888888743 3 57778888
Q ss_pred cEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCChhhhhcchhchhccc
Q 038037 613 EFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNT 692 (798)
Q Consensus 613 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~ 692 (798)
+.|+|++|++.++ ..+..+++|+.|+|++|.++++ . .+..+++|+.|+|++|++.+..| +.
T Consensus 112 ~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~--~l~~l~~L~~L~Ls~N~l~~~~~---l~---------- 172 (605)
T 1m9s_A 112 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--T--VLSRLTKLDTLSLEDNQISDIVP---LA---------- 172 (605)
T ss_dssp CEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--G--GGGSCTTCSEEECCSSCCCCCGG---GT----------
T ss_pred CEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--h--hhcccCCCCEEECcCCcCCCchh---hc----------
Confidence 8888888888753 3477788888888888887765 1 34567788888888887764322 11
Q ss_pred cccccccCCCCCCCCccccchhccccceeeeccCcccccCCccCceeEEEcCCCcccccCchhhhcccCCCeEeCcCCcc
Q 038037 693 TELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNL 772 (798)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 772 (798)
.++.|+.|+|++|+|+++ ..+..+++|+.|+|++|++
T Consensus 173 -----------------------------------------~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 173 -----------------------------------------GLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp -----------------------------------------TCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEE
T ss_pred -----------------------------------------cCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcC
Confidence 035677888888888765 3577888888888888887
Q ss_pred ccCCCccccCC
Q 038037 773 QGHIPSCLGNL 783 (798)
Q Consensus 773 ~~~~p~~~~~l 783 (798)
++.....+..+
T Consensus 210 ~~~p~~~~~~l 220 (605)
T 1m9s_A 210 LNKPINHQSNL 220 (605)
T ss_dssp ECCCCCCCSSC
T ss_pred cCCcccccccE
Confidence 76544443333
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=7.9e-17 Score=180.41 Aligned_cols=175 Identities=25% Similarity=0.310 Sum_probs=130.7
Q ss_pred cccccCCCCeEEcCCCCCCCCCCchhccCCCCCcEEEccCCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCCchH
Q 038037 64 SLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLA 143 (798)
Q Consensus 64 ~l~~~~~L~~L~L~~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~ 143 (798)
.+..+++|+.|++++|.+.. ++ .+..+++|++|+|++|.+.+ ++. +..+++|++|+|++|.+.. +
T Consensus 38 ~~~~L~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~N~l~~---------l- 102 (605)
T 1m9s_A 38 TQNELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTD-IKP-LTNLKNLGWLFLDENKIKD---------L- 102 (605)
T ss_dssp CHHHHTTCCCCBCTTCCCCC--CT-TGGGCTTCCEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCC---------C-
T ss_pred chhcCCCCCEEECcCCCCCC--Ch-HHccCCCCCEEEeeCCCCCC-Chh-hccCCCCCEEECcCCCCCC---------C-
Confidence 55678888888888888765 33 57788888888888888874 443 7888888888888887432 1
Q ss_pred HHHhcCCCCCEEEccCCccCCCCchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCC
Q 038037 144 NLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHS 223 (798)
Q Consensus 144 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 223 (798)
+.+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+++. ..+..+++|+.|+|++|.+.+..+ +..+++
T Consensus 103 ~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~ 176 (605)
T 1m9s_A 103 SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTK 176 (605)
T ss_dssp TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTT
T ss_pred hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCC
Confidence 2466788888888888887653 3577788888888888887764 567778888888888888876555 777888
Q ss_pred CCEEecCCCcCCCcccccccCCCCCCEEECcCCcCCCC
Q 038037 224 LKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSE 261 (798)
Q Consensus 224 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~ 261 (798)
|+.|+|++|.+++. ..+..+++|+.|+|++|.+...
T Consensus 177 L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 177 LQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred CCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 88888888887753 3577778888888888877544
No 114
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.68 E-value=1.9e-16 Score=150.81 Aligned_cols=138 Identities=20% Similarity=0.223 Sum_probs=120.6
Q ss_pred CEEEeeCcccccccChhhhccccccceeecCCCcccccccc-ccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCC
Q 038037 540 KNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPD-TFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLG 618 (798)
Q Consensus 540 ~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~ 618 (798)
+++++++|.++ .+|..+. .++++|++++|+|+++.+. .|..+++|++|++++|+|+++.|..|.++++|++|+|+
T Consensus 11 ~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 78899999987 4555443 3799999999999877764 58999999999999999999889999999999999999
Q ss_pred CCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCChhhhhc
Q 038037 619 NNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLC 683 (798)
Q Consensus 619 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~ 683 (798)
+|+|++..+..|..+++|+.|+|++|+++++.+..+ ..+++|+.|++++|+++|.++..++..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~c~c~l~~~~~ 149 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF--EHLNSLTSLNLASNPFNCNCHLAWFAE 149 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS--TTCTTCCEEECTTCCBCCSGGGHHHHH
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHh--hcCCCCCEEEeCCCCccCcCcchHHHH
Confidence 999999988889999999999999999999876654 778999999999999999888766644
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=2.1e-16 Score=151.42 Aligned_cols=152 Identities=22% Similarity=0.328 Sum_probs=77.3
Q ss_pred cCCCCCcEEEccCCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCCchHHHHhcCCCCCEEEccCCccCCCCchhc
Q 038037 91 INLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNL 170 (798)
Q Consensus 91 ~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 170 (798)
+.+++|++|++++|.+. .+| .+..+++|++|++++|.+. ....+..+++|++|++++|.+.+..+..+
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~----------~~~~l~~l~~L~~L~l~~n~l~~~~~~~l 108 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT----------NYNPISGLSNLERLRIMGKDVTSDKIPNL 108 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS----------CCGGGTTCTTCCEEEEECTTCBGGGSCCC
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC----------cchhhhcCCCCCEEEeECCccCcccChhh
Confidence 45566666666666665 444 4666666666666666411 11234445555555555555554444445
Q ss_pred cCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCC-CCCccchhccCCCCCCEEecCCCcCCCcccccccCCCCCC
Q 038037 171 ANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNE-LRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLK 249 (798)
Q Consensus 171 ~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 249 (798)
+.+++|++|++++|.+++..+..+..+++|++|++++|. +... + .+..+++|++|++++|.+++. + .+..+++|+
T Consensus 109 ~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~ 184 (197)
T 4ezg_A 109 SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLN 184 (197)
T ss_dssp TTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCC
T ss_pred cCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCC
Confidence 555555555555555554444445555555555555554 3322 2 344455555555555554432 1 344445555
Q ss_pred EEECcCCcC
Q 038037 250 KLDLSQNRF 258 (798)
Q Consensus 250 ~L~L~~n~i 258 (798)
+|++++|++
T Consensus 185 ~L~l~~N~i 193 (197)
T 4ezg_A 185 QLYAFSQTI 193 (197)
T ss_dssp EEEECBC--
T ss_pred EEEeeCccc
Confidence 555555544
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.67 E-value=2.4e-16 Score=150.98 Aligned_cols=150 Identities=19% Similarity=0.231 Sum_probs=123.1
Q ss_pred ccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEE
Q 038037 513 PETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVID 592 (798)
Q Consensus 513 ~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 592 (798)
+.++.+++++|.+. .+| .+..+++|++|++++|.++.. ..+..++ +|++|++++|++++..+..|..+++|++|+
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~~--~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNY--NPISGLS-NLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSCC--GGGTTCT-TCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCcc--hhhhcCC-CCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 45666677777776 444 588899999999999977633 4677777 799999999999987788899999999999
Q ss_pred cCCCcccccCCccccCCCCCcEEeCCCCc-CCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCc
Q 038037 593 LSHNLFQGRIPRSLVNCSKLEFLDLGNNQ-ISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNR 671 (798)
Q Consensus 593 Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~ 671 (798)
+++|++++..+..+..+++|++|++++|+ ++.. | .+..+++|+.|++++|+++++. .+..+++|+.|++++|+
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n~i~~~~----~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNIQFDGVHDYR----GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEECTTBCCCCCT----TGGGCSSCCEEEECBC-
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEECCCCCCcChH----HhccCCCCCEEEeeCcc
Confidence 99999998778889999999999999998 7644 4 6889999999999999998763 34678999999999999
Q ss_pred Cc
Q 038037 672 FT 673 (798)
Q Consensus 672 l~ 673 (798)
+.
T Consensus 193 i~ 194 (197)
T 4ezg_A 193 IG 194 (197)
T ss_dssp --
T ss_pred cC
Confidence 86
No 117
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.65 E-value=6.8e-16 Score=146.81 Aligned_cols=138 Identities=23% Similarity=0.295 Sum_probs=119.5
Q ss_pred CEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCC
Q 038037 540 KNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGN 619 (798)
Q Consensus 540 ~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~ 619 (798)
+++++++|.++ .+|..+ +.+|++|++++|.|+ .+|..|.++++|++|++++|.|+++.+..|.++++|++|+|++
T Consensus 13 ~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI---PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCC---CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCC---CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 57889999888 445443 347999999999998 4568899999999999999999988888999999999999999
Q ss_pred CcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCChhhhhcc
Q 038037 620 NQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCW 684 (798)
Q Consensus 620 N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~ 684 (798)
|+|+.+.+..|..+++|+.|+|++|.++.+.+..+ ..+++|+.|++++|++.+.+...++..|
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~~~C~c~l~~l~~~ 150 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAF--NDLSALSHLAIGANPLYCDCNMQWLSDW 150 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTT--TTCTTCCEEECCSSCEECSGGGHHHHHH
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhh--hcCccccEEEeCCCCeecCCcCHHHHHH
Confidence 99999888899999999999999999998865544 6789999999999999988887776654
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.65 E-value=1e-17 Score=186.55 Aligned_cols=197 Identities=18% Similarity=0.170 Sum_probs=152.6
Q ss_pred cCCCCCCEEEeeCcccccccChhhhccccccceeecCCCc-------------cccccccccccCCCccEEE-cCCCccc
Q 038037 534 CNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNN-------------FFGTIPDTFIKESRLGVID-LSHNLFQ 599 (798)
Q Consensus 534 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~-------------i~~~~~~~~~~l~~L~~L~-Ls~N~i~ 599 (798)
..++.|+.|+|++|.++ .+|..+..+. +|+.|++++|. +.+..|..+..+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~-~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCK-ELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHH-HHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHH-HHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 56788889999999987 6788888887 69999987775 4566777888888888888 5655433
Q ss_pred ccCCc-----ccc--CCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcC
Q 038037 600 GRIPR-----SLV--NCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRF 672 (798)
Q Consensus 600 ~~~~~-----~~~--~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l 672 (798)
..... .+. ....|+.|+|++|++++ +|. |..+++|+.|+|++|.++.+ |. .+..+++|+.|++++|++
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~l-p~--~~~~l~~L~~L~Ls~N~l 498 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRAL-PP--ALAALRCLEVLQASDNAL 498 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCCC-CG--GGGGCTTCCEEECCSSCC
T ss_pred hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccccc-ch--hhhcCCCCCEEECCCCCC
Confidence 11100 000 01358999999999986 455 99999999999999999865 33 457899999999999999
Q ss_pred cCCCChhhhhcchhchhccccccccccCCCCCCCCccccchhccccceeeeccCcccccCCccCceeEEEcCCCcccccC
Q 038037 673 TGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVI 752 (798)
Q Consensus 673 ~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~ 752 (798)
++ +| . +.. ++.|+.|+|++|+|+++.
T Consensus 499 ~~-lp-~-l~~---------------------------------------------------l~~L~~L~Ls~N~l~~~~ 524 (567)
T 1dce_A 499 EN-VD-G-VAN---------------------------------------------------LPRLQELLLCNNRLQQSA 524 (567)
T ss_dssp CC-CG-G-GTT---------------------------------------------------CSSCCEEECCSSCCCSSS
T ss_pred CC-Cc-c-cCC---------------------------------------------------CCCCcEEECCCCCCCCCC
Confidence 84 55 1 111 467899999999999987
Q ss_pred -chhhhcccCCCeEeCcCCccccCCCcc---ccCCCCCCeEeC
Q 038037 753 -PTSIANLKGLQVLNLDNNNLQGHIPSC---LGNLTNLESLDL 791 (798)
Q Consensus 753 -~~~~~~l~~L~~L~Ls~N~l~~~~p~~---~~~l~~L~~L~L 791 (798)
|..+..+++|+.|+|++|.+++.+|.. +..+++|+.||+
T Consensus 525 ~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 525 AIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp TTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 999999999999999999999876642 335899999975
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.65 E-value=1.5e-16 Score=159.64 Aligned_cols=127 Identities=28% Similarity=0.379 Sum_probs=74.5
Q ss_pred ccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCC
Q 038037 533 ICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKL 612 (798)
Q Consensus 533 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L 612 (798)
+..+++|++|++++|++++..+ +..++ +|++|++++|++++..+ +.. ++|++|++++|++++. ..+..+++|
T Consensus 59 l~~l~~L~~L~L~~N~i~~~~~--l~~l~-~L~~L~L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L 130 (263)
T 1xeu_A 59 MQFFTNLKELHLSHNQISDLSP--LKDLT-KLEELSVNRNRLKNLNG--IPS-ACLSRLFLDNNELRDT--DSLIHLKNL 130 (263)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCS-SCCEEECCSSCCSCCTT--CCC-SSCCEEECCSSCCSBS--GGGTTCTTC
T ss_pred HhhCCCCCEEECCCCccCCChh--hccCC-CCCEEECCCCccCCcCc--ccc-CcccEEEccCCccCCC--hhhcCcccc
Confidence 4455666666666666664433 55554 56666666666654322 122 6666666666666643 245666666
Q ss_pred cEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCc
Q 038037 613 EFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFT 673 (798)
Q Consensus 613 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~ 673 (798)
++|++++|++++. + .+..+++|+.|++++|+++++ . .+..+++|+.|++++|+++
T Consensus 131 ~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~--~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 131 EILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--G--GLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp CEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--T--TSTTCCCCCEEEEEEEEEE
T ss_pred cEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--H--HhccCCCCCEEeCCCCccc
Confidence 6666666666644 2 456666666666666666655 1 2345666666666666665
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.65 E-value=1.1e-18 Score=194.37 Aligned_cols=203 Identities=19% Similarity=0.155 Sum_probs=111.4
Q ss_pred ccCccEEeeCCCCCCCcchhhhCCCCccEEECCCCc-------------ccCCCCcccccccCcccceee-CCCCccccc
Q 038037 420 SQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANR-------------IHGKIPKWLLDPSMQYLNALN-LSHNLLTRF 485 (798)
Q Consensus 420 ~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~-------------i~~~~~~~~~~~~l~~L~~L~-ls~n~l~~~ 485 (798)
.+.|+.|++++|+++.+|..+..+++|+.|++++|. ..+..|..+. .+++|+.|+ ++.|.+..+
T Consensus 348 ~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~--~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 348 DEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQ--YFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp TTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHH--HHHHHHHHCGGGHHHHHHH
T ss_pred CccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHH--HHHhcccCcchhhcccchh
Confidence 355666666666666677778888888888876654 2223333332 445555555 444433211
Q ss_pred cCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccc
Q 038037 486 DQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELA 565 (798)
Q Consensus 486 ~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~ 565 (798)
..+.+.+|.++...+ ..|++|++++|.+++ +|. +..++ +|+
T Consensus 426 ------------------------------~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~-~L~ 466 (567)
T 1dce_A 426 ------------------------------RSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLL-LVT 466 (567)
T ss_dssp ------------------------------HHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGT-TCC
T ss_pred ------------------------------hhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccc-cCc
Confidence 111222233332211 135666666666664 343 55555 566
Q ss_pred eeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccC-CcccCCCCCCCEEEccCc
Q 038037 566 VLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTF-PSWLGTLPNLNVLILRSN 644 (798)
Q Consensus 566 ~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~L~~N 644 (798)
.|++++|.|+ .+|..|.++++|+.|+|++|.|++ +| .+..+++|++|+|++|+|++.. |..|..+++|+.|+|++|
T Consensus 467 ~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 467 HLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543 (567)
T ss_dssp EEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred EeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCC
Confidence 6666666666 445566666666666666666664 34 5666666666666666666554 666666666666666666
Q ss_pred ccccccCCCCC-cCCCCcccEEE
Q 038037 645 TFYGIIKEPRT-DCGFSKLHIID 666 (798)
Q Consensus 645 ~l~~~~~~~~~-~~~~~~L~~L~ 666 (798)
++++.++.... ...+++|+.|+
T Consensus 544 ~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 544 SLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp GGGGSSSCTTHHHHHCTTCSEEE
T ss_pred cCCCCccHHHHHHHHCcccCccC
Confidence 66655432211 11245555554
No 121
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.63 E-value=9.4e-16 Score=159.97 Aligned_cols=56 Identities=9% Similarity=0.011 Sum_probs=50.5
Q ss_pred cCcee-EEEcCCCcccccCchhhhcccCCCeEeCcCCccccCCCccccCCCCCCeEeC
Q 038037 735 PDILT-GIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDL 791 (798)
Q Consensus 735 ~~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 791 (798)
.+.|+ .+++.+ .++.+.+.+|.++++|+.+++++|.++.+.+.+|.++++|+.++.
T Consensus 272 ~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 272 CGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred ChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 46688 899988 888889999999999999999999999999999999999999874
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.61 E-value=1.2e-16 Score=183.74 Aligned_cols=121 Identities=20% Similarity=0.257 Sum_probs=87.9
Q ss_pred ccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccC
Q 038037 552 LLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLG 631 (798)
Q Consensus 552 ~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~ 631 (798)
..+..+..+. .|+.|+|++|.+.. +|..+..+++|++|+|++|.|+ .+|..|.++++|++|+|++|+|+ .+|..|.
T Consensus 215 ~~~~~~~~l~-~L~~L~Ls~n~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~ 290 (727)
T 4b8c_D 215 MPKDSKYDDQ-LWHALDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELG 290 (727)
T ss_dssp -------CCC-CCCEEECTTSCCSC-CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGG
T ss_pred cChhhhccCC-CCcEEECCCCCCCC-CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhc
Confidence 4456666666 68888888888874 4444447888888888888888 67777888888888888888887 5677788
Q ss_pred CCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCChh
Q 038037 632 TLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSK 679 (798)
Q Consensus 632 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~ 679 (798)
.+++|+.|+|++|.++.+. . .+..+++|+.|+|++|++++.+|..
T Consensus 291 ~l~~L~~L~L~~N~l~~lp-~--~~~~l~~L~~L~L~~N~l~~~~p~~ 335 (727)
T 4b8c_D 291 SCFQLKYFYFFDNMVTTLP-W--EFGNLCNLQFLGVEGNPLEKQFLKI 335 (727)
T ss_dssp GGTTCSEEECCSSCCCCCC-S--STTSCTTCCCEECTTSCCCSHHHHH
T ss_pred CCCCCCEEECCCCCCCccC-h--hhhcCCCccEEeCCCCccCCCChHH
Confidence 8888888888888887553 2 2467888888888888888666654
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.60 E-value=2.6e-16 Score=181.01 Aligned_cols=187 Identities=22% Similarity=0.210 Sum_probs=116.9
Q ss_pred cccceeeCCCCccccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCccc
Q 038037 470 QYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSL 549 (798)
Q Consensus 470 ~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i 549 (798)
+.++.|++.+|.+..... ..++.++++.+.+.+ +++..|.+. ..+..+..++.|++|+|++|.+
T Consensus 173 ~~~~~l~L~~n~~~~~~~----~~l~~l~Ls~~~i~~-----------~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l 236 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQ----ALLQHKKLSQYSIDE-----------DDDIENRMV-MPKDSKYDDQLWHALDLSNLQI 236 (727)
T ss_dssp -----------------------------------------------------------------CCCCCCEEECTTSCC
T ss_pred CccceEEeeCCCCCcchh----hHhhcCccCcccccC-----------cccccccee-cChhhhccCCCCcEEECCCCCC
Confidence 456777787777765322 234555566555442 234445554 5677899999999999999999
Q ss_pred ccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcc
Q 038037 550 SGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSW 629 (798)
Q Consensus 550 ~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~ 629 (798)
. .+|..+..++ +|++|+|++|.|+ .+|..|.++++|++|+|++|.|+ .+|..|.++++|++|+|++|.|+ .+|..
T Consensus 237 ~-~l~~~~~~l~-~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~ 311 (727)
T 4b8c_D 237 F-NISANIFKYD-FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWE 311 (727)
T ss_dssp S-CCCGGGGGCC-SCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSS
T ss_pred C-CCChhhcCCC-CCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChh
Confidence 8 5666666777 7999999999999 67888999999999999999999 67999999999999999999998 56777
Q ss_pred cCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCCh
Q 038037 630 LGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPS 678 (798)
Q Consensus 630 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~ 678 (798)
|..+++|+.|+|++|++++..+..+.... ..+..+++++|.+++.+|.
T Consensus 312 ~~~l~~L~~L~L~~N~l~~~~p~~~~~~~-~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 312 FGNLCNLQFLGVEGNPLEKQFLKILTEKS-VTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp TTSCTTCCCEECTTSCCCSHHHHHHHHHH-HHHHHHHHHHCCCCCCCCC
T ss_pred hhcCCCccEEeCCCCccCCCChHHHhhcc-hhhhHHhhccCcccCcCcc
Confidence 99999999999999999987654331111 1223478899999877764
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.59 E-value=5.1e-15 Score=140.84 Aligned_cols=111 Identities=27% Similarity=0.382 Sum_probs=92.4
Q ss_pred CCCEEEeeCcccccccCh-hhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEe
Q 038037 538 TLKNLVLSHNSLSGLLPQ-CLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLD 616 (798)
Q Consensus 538 ~L~~L~Ls~n~i~~~~~~-~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~ 616 (798)
++++|++++|.+++..+. .+..++ +|++|++++|+|+++.|..|.++++|++|+|++|+|++..+..|.++++|++|+
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLP-HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCT-TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred CCCEEECCCCcCCccCCccccccCC-CCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence 678888888888766654 366666 688888888888888888888888888888888888888888888888899999
Q ss_pred CCCCcCCccCCcccCCCCCCCEEEccCcccccc
Q 038037 617 LGNNQISDTFPSWLGTLPNLNVLILRSNTFYGI 649 (798)
Q Consensus 617 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~ 649 (798)
|++|++++..|..|..+++|+.|+|++|++...
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 999998888888888888999999999888654
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.59 E-value=1.8e-15 Score=140.86 Aligned_cols=134 Identities=19% Similarity=0.193 Sum_probs=85.9
Q ss_pred CCCCEEEeeCcccc-cccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEE
Q 038037 537 NTLKNLVLSHNSLS-GLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFL 615 (798)
Q Consensus 537 ~~L~~L~Ls~n~i~-~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L 615 (798)
++|++|++++|.++ +.+|..+..++ +|++|++++|.+++. ..|..+++|++|++++|.+++..|..+..+++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~-~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFV-NLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGG-GCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCC-CCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 55666777777665 44555555555 577777777776654 556667777777777777776566666667777777
Q ss_pred eCCCCcCCccCC-cccCCCCCCCEEEccCcccccccCC-CCCcCCCCcccEEEccCCcCc
Q 038037 616 DLGNNQISDTFP-SWLGTLPNLNVLILRSNTFYGIIKE-PRTDCGFSKLHIIDLSNNRFT 673 (798)
Q Consensus 616 ~L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~~~~~~L~~L~ls~N~l~ 673 (798)
++++|++++..+ ..+..+++|+.|++++|+++++.+. ...+..+++|+.|++++|.+.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 777777765422 5666777777777777777665320 012355677777777777665
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.59 E-value=1.7e-15 Score=140.98 Aligned_cols=138 Identities=22% Similarity=0.204 Sum_probs=121.1
Q ss_pred CCCccceEEEeecceee-cccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCc
Q 038037 510 VPPPETILYLVSNNSLT-GEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRL 588 (798)
Q Consensus 510 ~~~~~l~~l~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L 588 (798)
..++.++.+++++|.++ +.+|..+..+++|++|++++|.+++. ..+..++ +|++|++++|++++..|..+..+++|
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLP-KLKKLELSENRIFGGLDMLAEKLPNL 97 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCS-SCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCC-CCCEEECcCCcCchHHHHHHhhCCCC
Confidence 34688999999999998 67788889999999999999999876 6777777 79999999999998788888889999
Q ss_pred cEEEcCCCcccccCC-ccccCCCCCcEEeCCCCcCCccCC---cccCCCCCCCEEEccCccccccc
Q 038037 589 GVIDLSHNLFQGRIP-RSLVNCSKLEFLDLGNNQISDTFP---SWLGTLPNLNVLILRSNTFYGII 650 (798)
Q Consensus 589 ~~L~Ls~N~i~~~~~-~~~~~l~~L~~L~L~~N~i~~~~~---~~~~~l~~L~~L~L~~N~l~~~~ 650 (798)
++|++++|.+++..+ ..+..+++|++|++++|++++..+ ..|..+++|+.|++++|.+..+.
T Consensus 98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 999999999996532 688999999999999999987655 48999999999999999987763
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.59 E-value=6.8e-15 Score=138.24 Aligned_cols=133 Identities=20% Similarity=0.223 Sum_probs=115.2
Q ss_pred CCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCC
Q 038037 539 LKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLG 618 (798)
Q Consensus 539 L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~ 618 (798)
.+.++++++.++. +|..+ +++|++|++++|++++..+..|..+++|++|++++|.++++.+..|..+++|++|+++
T Consensus 9 ~~~l~~~~~~l~~-~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCSS-CCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCcc-CCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 4788889998884 44333 2479999999999998888888999999999999999998777788999999999999
Q ss_pred CCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCC
Q 038037 619 NNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLP 677 (798)
Q Consensus 619 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p 677 (798)
+|++++..+..|..+++|+.|++++|.++++.+..+ ..+++|+.|++++|++.+.+|
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIF--DRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCBCCCHH
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHh--cCCcccCEEEecCCCeeccCc
Confidence 999998888889999999999999999998765433 678999999999999998777
No 128
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.59 E-value=3.6e-15 Score=155.51 Aligned_cols=283 Identities=14% Similarity=0.079 Sum_probs=174.5
Q ss_pred CCCCcEEeccCCcccCccchHHHhhc-CCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcc-hhhhC----
Q 038037 369 LTQLIVLSLSQNSYRGMIELDFLLTS-LKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFP-NFLKN---- 442 (798)
Q Consensus 369 l~~L~~L~l~~n~l~~~~~~~~~~~~-l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~-~~~~~---- 442 (798)
+.+++.|.++++- .. .... .+.. +++|+.|++++|+|........ ..+.++...+..+. +| ..|.+
T Consensus 24 ~~~l~~L~l~g~i-~~-~~~~-~l~~~l~~L~~LdLs~n~i~~~~~~~~--~~~~~~~~~~~~~~---I~~~aF~~~~~~ 95 (329)
T 3sb4_A 24 ANSITHLTLTGKL-NA-EDFR-HLRDEFPSLKVLDISNAEIKMYSGKAG--TYPNGKFYIYMANF---VPAYAFSNVVNG 95 (329)
T ss_dssp HHHCSEEEEEEEE-CH-HHHH-HHHHSCTTCCEEEEEEEEECCEEESSS--SSGGGCCEEECTTE---ECTTTTEEEETT
T ss_pred hCceeEEEEeccc-cH-HHHH-HHHHhhccCeEEecCcceeEEecCccc--cccccccccccccc---cCHHHhcccccc
Confidence 4467777777642 11 1112 2333 7788888888888772221111 11223444444443 33 24555
Q ss_pred ----CCCccEEECCCCcccCCCCcccccccCcccceeeCCCCccccccCCCCCCCCcEEeccCCc---------cCCCCC
Q 038037 443 ----QHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNN---------LQGPLP 509 (798)
Q Consensus 443 ----~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~n~---------l~~~~~ 509 (798)
+++|+.+++.+ .++...+..|. .+++|+.+++++|.+..++...+....+...+..+. +....+
T Consensus 96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~--~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f 172 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE-KIKNIEDAAFK--GCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAF 172 (329)
T ss_dssp EEEECTTCCC-CBCT-TCCEECTTTTT--TCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCE
T ss_pred cccccCCCcEEECCc-cccchhHHHhh--cCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccc
Confidence 78888888877 66655555554 677888888888877777665554433333332221 111111
Q ss_pred CCCccce-EEEeecce-eecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCC
Q 038037 510 VPPPETI-LYLVSNNS-LTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESR 587 (798)
Q Consensus 510 ~~~~~l~-~l~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~ 587 (798)
.....++ .+.+.... +.......-....+++.+.+.++-.. .....+.....+|+++++++|+++.+.+.+|.++++
T Consensus 173 ~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~ 251 (329)
T 3sb4_A 173 IEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKY 251 (329)
T ss_dssp EESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTT
T ss_pred ccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCC
Confidence 1112222 12221110 00000111113456677777765322 222223222237999999999999888889999999
Q ss_pred ccEEEcCCCcccccCCccccCCCCCc-EEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEE
Q 038037 588 LGVIDLSHNLFQGRIPRSLVNCSKLE-FLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIID 666 (798)
Q Consensus 588 L~~L~Ls~N~i~~~~~~~~~~l~~L~-~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ 666 (798)
|+.+++.+| ++.+.+.+|.+|++|+ .+++.+ .++.+.+.+|.++++|+.+++.+|.++.+.+..+ .++++|+.++
T Consensus 252 L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF--~~~~~L~~ly 327 (329)
T 3sb4_A 252 LLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELF--GNGVPSKLIY 327 (329)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTT--CTTCCCCEEE
T ss_pred CCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhh--cCCcchhhhc
Confidence 999999998 8878888999999999 999988 7887888999999999999999999999866644 7888999886
Q ss_pred c
Q 038037 667 L 667 (798)
Q Consensus 667 l 667 (798)
.
T Consensus 328 ~ 328 (329)
T 3sb4_A 328 K 328 (329)
T ss_dssp C
T ss_pred c
Confidence 4
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.58 E-value=1.1e-14 Score=138.52 Aligned_cols=126 Identities=27% Similarity=0.361 Sum_probs=104.5
Q ss_pred EEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCc
Q 038037 518 YLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNL 597 (798)
Q Consensus 518 l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~ 597 (798)
++++++.++ .+|..+ .++|++|++++|.++ .+|..+..++ +|++|++++|.|+++.+.+|.++++|++|+|++|+
T Consensus 15 l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~-~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 15 VRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYK-HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhccc-CCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 344444444 334433 257889999999988 5667888887 79999999999998888889999999999999999
Q ss_pred ccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCccccc
Q 038037 598 FQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYG 648 (798)
Q Consensus 598 i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~ 648 (798)
|+++.+..|.++++|++|+|++|+|+.+.+..|..+++|+.|++++|++..
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 998888889999999999999999998777789999999999999998863
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.55 E-value=3.6e-15 Score=135.70 Aligned_cols=129 Identities=24% Similarity=0.252 Sum_probs=69.9
Q ss_pred CCCCEEEeeCcccc-cccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEE
Q 038037 537 NTLKNLVLSHNSLS-GLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFL 615 (798)
Q Consensus 537 ~~L~~L~Ls~n~i~-~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L 615 (798)
++|++|++++|.++ +.+|..+..++ +|++|++++|.+++. ..|..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFE-ELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCT-TCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcC-CCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 44555555555555 34444444444 455556655555544 445556666666666666665455555556666666
Q ss_pred eCCCCcCCcc-CCcccCCCCCCCEEEccCcccccccCC-CCCcCCCCcccEEEcc
Q 038037 616 DLGNNQISDT-FPSWLGTLPNLNVLILRSNTFYGIIKE-PRTDCGFSKLHIIDLS 668 (798)
Q Consensus 616 ~L~~N~i~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~~~~~~L~~L~ls 668 (798)
++++|++++. .+..+..+++|+.|++++|++++..+. ...+..+++|+.||++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 6666666543 224555666666666666666554320 0012445566666654
No 131
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.54 E-value=4.1e-13 Score=143.73 Aligned_cols=123 Identities=16% Similarity=0.097 Sum_probs=74.8
Q ss_pred cccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCC
Q 038037 532 WICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSK 611 (798)
Q Consensus 532 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~ 611 (798)
.|..+..++.+....+.+. ..+|..+. +|+.+.+..+ ++.+...+|.++.+|+.+++.++ ++.+...+|.+|++
T Consensus 271 ~F~~~~~l~~~~~~~~~i~---~~~F~~~~-~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~ 344 (394)
T 4fs7_A 271 LFYNCSGLKKVIYGSVIVP---EKTFYGCS-SLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTS 344 (394)
T ss_dssp TTTTCTTCCEEEECSSEEC---TTTTTTCT-TCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTT
T ss_pred ccccccccceeccCceeec---cccccccc-cccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCC
Confidence 4444555555555544332 23444444 4666666543 55555667777777777777644 65566677777777
Q ss_pred CcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEE
Q 038037 612 LEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHII 665 (798)
Q Consensus 612 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L 665 (798)
|+.+++..+ ++.+...+|.++++|+.+++..+ +..+ ..++.++++|+.+
T Consensus 345 L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~~---~~~F~~c~~L~~I 393 (394)
T 4fs7_A 345 LSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LEQY---RYDFEDTTKFKWI 393 (394)
T ss_dssp CCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GGGG---GGGBCTTCEEEEE
T ss_pred CCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CEEh---hheecCCCCCcEE
Confidence 888777666 66666677777777887777654 3322 1244566666654
No 132
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.54 E-value=1.3e-13 Score=146.51 Aligned_cols=205 Identities=14% Similarity=0.141 Sum_probs=151.1
Q ss_pred ccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCcccc
Q 038037 528 EIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLV 607 (798)
Q Consensus 528 ~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~ 607 (798)
+-+.+|.++++|+.+++++|.++.+...+|. .. +|+.+.+..+ ++.+...+|.++++|+.+++..| ++.+...+|.
T Consensus 171 I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~-~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~ 246 (401)
T 4fdw_A 171 LKEDIFYYCYNLKKADLSKTKITKLPASTFV-YA-GIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFR 246 (401)
T ss_dssp ECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TC-CCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTT
T ss_pred ehHHHhhCcccCCeeecCCCcceEechhhEe-ec-ccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccccccc
Confidence 3445777888888888888888866666666 34 6888888744 77777788888888888888875 5657777887
Q ss_pred CCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccc-----cccCCCCCcCCCCcccEEEccCCcCcCCCChhhhh
Q 038037 608 NCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFY-----GIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFL 682 (798)
Q Consensus 608 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-----~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~ 682 (798)
+ .+|+.+.+ .+.++.+...+|.++++|+.+.+.+|.+. .+.+. +|.++++|+.+++.+ .++ .++...|.
T Consensus 247 ~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~--aF~~c~~L~~l~l~~-~i~-~I~~~aF~ 320 (401)
T 4fdw_A 247 E-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPY--CLEGCPKLARFEIPE-SIR-ILGQGLLG 320 (401)
T ss_dssp T-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTT--TTTTCTTCCEECCCT-TCC-EECTTTTT
T ss_pred c-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHH--HhhCCccCCeEEeCC-ceE-EEhhhhhc
Confidence 7 68888888 45577677788888888888888887765 34333 457788888888874 354 44444333
Q ss_pred cchhchhccccccccccCCCCCCCCccccchhccccceeeeccCcccccCCccCceeEEEcCCCcccccCchhhhcccCC
Q 038037 683 CWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGL 762 (798)
Q Consensus 683 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L 762 (798)
+ ...|+.++|..| ++.+.+.+|.++ +|
T Consensus 321 ~---------------------------------------------------c~~L~~l~lp~~-l~~I~~~aF~~~-~L 347 (401)
T 4fdw_A 321 G---------------------------------------------------NRKVTQLTIPAN-VTQINFSAFNNT-GI 347 (401)
T ss_dssp T---------------------------------------------------CCSCCEEEECTT-CCEECTTSSSSS-CC
T ss_pred C---------------------------------------------------CCCccEEEECcc-ccEEcHHhCCCC-CC
Confidence 2 345677777544 777778888888 89
Q ss_pred CeEeCcCCccccCCCccccCCC-CCCeEeCCCCc
Q 038037 763 QVLNLDNNNLQGHIPSCLGNLT-NLESLDLSNNR 795 (798)
Q Consensus 763 ~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~ 795 (798)
+.+++++|.+..+.+..|.+++ +++.|++-.+.
T Consensus 348 ~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 348 KEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp CEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred CEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 9999988888888888888884 77888776654
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.53 E-value=3.4e-14 Score=133.46 Aligned_cols=112 Identities=21% Similarity=0.250 Sum_probs=93.7
Q ss_pred CCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEe
Q 038037 537 NTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLD 616 (798)
Q Consensus 537 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~ 616 (798)
++|++|++++|++++..+..+..++ +|++|++++|+++++.+..|.++++|++|++++|++++..+..|..+++|++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLT-QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcc-cccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 5788888888888876666677776 688888888888877777788899999999999999877777788889999999
Q ss_pred CCCCcCCccCCcccCCCCCCCEEEccCcccccc
Q 038037 617 LGNNQISDTFPSWLGTLPNLNVLILRSNTFYGI 649 (798)
Q Consensus 617 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~ 649 (798)
+++|+++++.+..|..+++|+.|++++|++.+.
T Consensus 107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 999999877777788899999999999987654
No 134
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.52 E-value=2.2e-14 Score=130.41 Aligned_cols=128 Identities=26% Similarity=0.261 Sum_probs=97.4
Q ss_pred CCCCCEEEccCCccC-CCCchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCEE
Q 038037 149 LSNLETLDLGDASIR-STIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKEL 227 (798)
Q Consensus 149 l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 227 (798)
.++|++|++++|.+. +..|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 466788888888776 56666777888888888888888765 667788888888888888887677777778888888
Q ss_pred ecCCCcCCCc-ccccccCCCCCCEEECcCCcCCCCCc---cccccCCCCceeecC
Q 038037 228 DLSANILSSE-LPTSIGNLSSLKKLDLSQNRFFSELP---TSIGNLGSLKVLDLS 278 (798)
Q Consensus 228 ~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~---~~~~~l~~L~~L~l~ 278 (798)
++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 8888888753 33667788888888888888866555 467777888777764
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.48 E-value=1.4e-12 Score=138.66 Aligned_cols=262 Identities=13% Similarity=0.096 Sum_probs=131.0
Q ss_pred CCCCEEEccCCccCCCCchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCEEec
Q 038037 150 SNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDL 229 (798)
Q Consensus 150 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 229 (798)
..++.+.+.. .++.+...+|.++ +|+.+.+..+ ++.+...+|.+. +|+.+.+.. .+..+...+|.+|++|+.+++
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 4444444433 2333444455543 4555555544 444555555553 466666554 444444555666666666666
Q ss_pred CCCcCCCcccccccCCCCCCEEECcCCcCCCCCccccccCCCCceeecCCCCcceEecCCccccccCCccccCCCCCCEE
Q 038037 230 SANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKIL 309 (798)
Q Consensus 230 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~L 309 (798)
.+|.++.+...+|. +.+|+.+.+..+ +......+|.++++|+.+++..+ ++.+. ..+|.+ .+|+.+
T Consensus 188 ~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~----------~~aF~~-~~L~~i 253 (401)
T 4fdw_A 188 SKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIG----------QEAFRE-SGITTV 253 (401)
T ss_dssp TTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEEC----------TTTTTT-CCCSEE
T ss_pred CCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcc----------cccccc-CCccEE
Confidence 66555544444444 356666666533 44445555666666655555543 23321 334444 456666
Q ss_pred EcCCCCccccCCCCcCCCCCCcEEeccCccCc-----CCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCcccC
Q 038037 310 DLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFS-----GDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRG 384 (798)
Q Consensus 310 ~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~ 384 (798)
.+. +.+......+|.+|++|+.+++.++.+. ..... +|.+|++|+.+.+.+ .+..
T Consensus 254 ~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~------------------aF~~c~~L~~l~l~~-~i~~ 313 (401)
T 4fdw_A 254 KLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPY------------------CLEGCPKLARFEIPE-SIRI 313 (401)
T ss_dssp EEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTT------------------TTTTCTTCCEECCCT-TCCE
T ss_pred EeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHH------------------HhhCCccCCeEEeCC-ceEE
Confidence 663 3344444556666666666666655443 11111 455555555555552 2433
Q ss_pred ccchHHHhhcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcc-hhhhCCC-CccEEECCCCc
Q 038037 385 MIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFP-NFLKNQH-HLVILDLSANR 455 (798)
Q Consensus 385 ~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~-~~~~~~~-~L~~L~ls~n~ 455 (798)
+... .+.+|.+|+.+.+..+ ++.++...+.. + +|+.+.+.++....++ ..+.+++ .++.+.+..+.
T Consensus 314 I~~~--aF~~c~~L~~l~lp~~-l~~I~~~aF~~-~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 314 LGQG--LLGGNRKVTQLTIPAN-VTQINFSAFNN-T-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp ECTT--TTTTCCSCCEEEECTT-CCEECTTSSSS-S-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred Ehhh--hhcCCCCccEEEECcc-ccEEcHHhCCC-C-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 3332 2455555666655433 44444333322 2 5666666665554443 2334442 55666665544
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.48 E-value=4e-14 Score=132.70 Aligned_cols=138 Identities=17% Similarity=0.120 Sum_probs=111.5
Q ss_pred cccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCC
Q 038037 532 WICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSK 611 (798)
Q Consensus 532 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~ 611 (798)
.+..+++|++|++++|.++.. +. +..+.++|++|++++|.+++. ..|..+++|++|++++|.|++..+..|..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 466788999999999999854 43 445544799999999999876 67889999999999999999776666789999
Q ss_pred CcEEeCCCCcCCccCC-cccCCCCCCCEEEccCcccccccCC-CCCcCCCCcccEEEccCCcCc
Q 038037 612 LEFLDLGNNQISDTFP-SWLGTLPNLNVLILRSNTFYGIIKE-PRTDCGFSKLHIIDLSNNRFT 673 (798)
Q Consensus 612 L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~~~~~~L~~L~ls~N~l~ 673 (798)
|++|++++|++....+ ..+..+++|+.|++++|++..+... ...+..+++|+.||+++|.+.
T Consensus 90 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 90 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 9999999999975432 2788999999999999999876321 001357899999999999875
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.48 E-value=8.8e-14 Score=130.36 Aligned_cols=136 Identities=18% Similarity=0.198 Sum_probs=93.9
Q ss_pred ccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCC
Q 038037 581 TFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFS 660 (798)
Q Consensus 581 ~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~ 660 (798)
.|..+++|++|++++|.++.+ |......++|++|++++|++++. ..|..+++|+.|++++|.++++.+.. +..++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~--~~~l~ 88 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGL--DQALP 88 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCH--HHHCT
T ss_pred hcCCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcch--hhcCC
Confidence 466788888888888888844 54333334888888888888865 56788888888888888888764332 25677
Q ss_pred cccEEEccCCcCcCCCCh-hhhhcchhchhccccccccccCCCCCCCCccccchhccccceeeeccCcccccCCccCcee
Q 038037 661 KLHIIDLSNNRFTGKLPS-KSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILT 739 (798)
Q Consensus 661 ~L~~L~ls~N~l~~~~p~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 739 (798)
+|+.|++++|++. .+|. ..+. -.+.|+
T Consensus 89 ~L~~L~L~~N~i~-~~~~~~~l~---------------------------------------------------~l~~L~ 116 (176)
T 1a9n_A 89 DLTELILTNNSLV-ELGDLDPLA---------------------------------------------------SLKSLT 116 (176)
T ss_dssp TCCEEECCSCCCC-CGGGGGGGG---------------------------------------------------GCTTCC
T ss_pred CCCEEECCCCcCC-cchhhHhhh---------------------------------------------------cCCCCC
Confidence 8888888888875 3332 0000 035677
Q ss_pred EEEcCCCcccccCch---hhhcccCCCeEeCcCCccc
Q 038037 740 GIILSSNRFDGVIPT---SIANLKGLQVLNLDNNNLQ 773 (798)
Q Consensus 740 ~L~Ls~N~l~~~~~~---~~~~l~~L~~L~Ls~N~l~ 773 (798)
.|++++|.++...+. .+..+++|+.||+++|.+.
T Consensus 117 ~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 117 YLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 788888887754332 4777778888888777654
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.45 E-value=3.4e-13 Score=125.25 Aligned_cols=109 Identities=23% Similarity=0.227 Sum_probs=79.8
Q ss_pred cceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccC
Q 038037 564 LAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRS 643 (798)
Q Consensus 564 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~ 643 (798)
.+++++++|.++.+ |..+ .++|++|++++|+|+++.|..|.++++|++|+|++|+|+++.+..|..+++|+.|+|++
T Consensus 11 ~~~l~~s~n~l~~i-p~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASV-PTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCcc-CccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 45666666666643 3332 26677777888877777777777788888888888888777777777888888888888
Q ss_pred cccccccCCCCCcCCCCcccEEEccCCcCcCCCC
Q 038037 644 NTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLP 677 (798)
Q Consensus 644 N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p 677 (798)
|+++++.+..+ ..+++|+.|++++|++++.++
T Consensus 88 N~l~~~~~~~~--~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 88 NQLKSIPRGAF--DNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SCCCCCCTTTT--TTCTTCCEEECCSSCBCTTBG
T ss_pred CccCEeCHHHh--cCCCCCCEEEeCCCCCCCCch
Confidence 88877755433 667888888888888887765
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.40 E-value=1.3e-12 Score=121.68 Aligned_cols=108 Identities=18% Similarity=0.159 Sum_probs=66.8
Q ss_pred ceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCc
Q 038037 565 AVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSN 644 (798)
Q Consensus 565 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N 644 (798)
+.+++++|.++.+ |..+. ++|++|++++|+|+++.|..|.++++|++|+|++|+|+++.+..|..+++|+.|+|++|
T Consensus 15 ~~l~~~~n~l~~i-P~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASV-PAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSC-CSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCcc-CCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 4455555555432 32221 55666666666666666666666666777777777666655555666777777777777
Q ss_pred ccccccCCCCCcCCCCcccEEEccCCcCcCCCC
Q 038037 645 TFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLP 677 (798)
Q Consensus 645 ~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p 677 (798)
+++++.+.. +..+++|+.|++++|++.+.++
T Consensus 92 ~l~~l~~~~--~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRGA--FDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCCTTT--TTTCTTCSEEECCSSCBCTTBG
T ss_pred ccceeCHHH--hccccCCCEEEeCCCCcccccc
Confidence 776654432 3566777777777777775544
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.40 E-value=2e-15 Score=144.69 Aligned_cols=104 Identities=23% Similarity=0.285 Sum_probs=66.6
Q ss_pred ccceeecCCCcccccccc------ccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCC
Q 038037 563 ELAVLDLQGNNFFGTIPD------TFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNL 636 (798)
Q Consensus 563 ~L~~L~L~~n~i~~~~~~------~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L 636 (798)
.++.++++.+.+.+..|. .|..+++|++|++++|.+++ +| .+..+++|++|++++|+++ .+|..+..+++|
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L 95 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL 95 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence 567777777777666555 66677777777777777765 44 6666777777777777776 345555555666
Q ss_pred CEEEccCcccccccCCCCCcCCCCcccEEEccCCcCc
Q 038037 637 NVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFT 673 (798)
Q Consensus 637 ~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~ 673 (798)
+.|++++|+++++. .+..+++|+.|++++|+++
T Consensus 96 ~~L~L~~N~l~~l~----~~~~l~~L~~L~l~~N~i~ 128 (198)
T 1ds9_A 96 EELWISYNQIASLS----GIEKLVNLRVLYMSNNKIT 128 (198)
T ss_dssp SEEEEEEEECCCHH----HHHHHHHSSEEEESEEECC
T ss_pred CEEECcCCcCCcCC----ccccCCCCCEEECCCCcCC
Confidence 66666666666542 1244556666666666654
No 141
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.40 E-value=1.4e-11 Score=131.82 Aligned_cols=133 Identities=16% Similarity=0.089 Sum_probs=103.1
Q ss_pred ccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCcccc
Q 038037 528 EIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLV 607 (798)
Q Consensus 528 ~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~ 607 (798)
.-...|..+..++.+.+..+... +....|..+. .++......+.+ ...+|.++.+|+.+.+.++ ++.+...+|.
T Consensus 244 i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~-~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~ 317 (394)
T 4fs7_A 244 LGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCS-GLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFE 317 (394)
T ss_dssp ECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCT-TCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTT
T ss_pred cccccccccccceeEEcCCCcce-eecccccccc-ccceeccCceee---ccccccccccccccccccc-cceechhhhc
Confidence 33456778889999999877554 5566777776 688887776654 3457889999999999765 6667778899
Q ss_pred CCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCC
Q 038037 608 NCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNN 670 (798)
Q Consensus 608 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N 670 (798)
++++|+.+++..+ ++.+...+|.++.+|+.+.+..+ ++.+... +|.++++|+.+++..+
T Consensus 318 ~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~--aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 318 SCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGAN--AFQGCINLKKVELPKR 376 (394)
T ss_dssp TCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTT--TBTTCTTCCEEEEEGG
T ss_pred CCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHH--HhhCCCCCCEEEECCC
Confidence 9999999999754 77777889999999999999877 7777544 4578899999988654
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.40 E-value=8.9e-13 Score=122.37 Aligned_cols=107 Identities=21% Similarity=0.219 Sum_probs=94.1
Q ss_pred CCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCC
Q 038037 539 LKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLG 618 (798)
Q Consensus 539 L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~ 618 (798)
.+++++++|.++. +|..+ +.+|++|++++|+|+++.|..|.++++|++|+|++|+|+++.+..|..+++|++|+|+
T Consensus 11 ~~~l~~s~n~l~~-ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCSS-CCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCc-cCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 5789999999985 55444 2479999999999999889999999999999999999998888888999999999999
Q ss_pred CCcCCccCCcccCCCCCCCEEEccCcccccc
Q 038037 619 NNQISDTFPSWLGTLPNLNVLILRSNTFYGI 649 (798)
Q Consensus 619 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~ 649 (798)
+|+|+++.+..|..+++|+.|+|++|++...
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 9999988888899999999999999998643
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.37 E-value=1.7e-12 Score=120.84 Aligned_cols=106 Identities=17% Similarity=0.151 Sum_probs=91.6
Q ss_pred CEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCC
Q 038037 540 KNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGN 619 (798)
Q Consensus 540 ~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~ 619 (798)
+.+++++|.++ .+|..+. .+|++|++++|+|+++.|..|.++++|++|+|++|+|+++.+..|..+++|++|+|++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 68899999887 4555443 4799999999999988888999999999999999999987777788999999999999
Q ss_pred CcCCccCCcccCCCCCCCEEEccCcccccc
Q 038037 620 NQISDTFPSWLGTLPNLNVLILRSNTFYGI 649 (798)
Q Consensus 620 N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~ 649 (798)
|+|+++.+..|..+++|+.|+|++|++...
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 999987777799999999999999998643
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.34 E-value=1.1e-14 Score=139.41 Aligned_cols=134 Identities=23% Similarity=0.260 Sum_probs=100.6
Q ss_pred cccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCC
Q 038037 532 WICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSK 611 (798)
Q Consensus 532 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~ 611 (798)
.+..+++|++|++++|.+++ +| .+..++ +|++|++++|.++ .+|..+..+++|++|++++|++++. | .+..+++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~-~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~~ 116 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGME-NLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL-S-GIEKLVN 116 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHT-TCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCH-H-HHHHHHH
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCC-CCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcC-C-ccccCCC
Confidence 77888888888888888886 45 677776 6888888888887 4566777778888888888888853 4 5777888
Q ss_pred CcEEeCCCCcCCccCC-cccCCCCCCCEEEccCcccccccCCC--------CCcCCCCcccEEEccCCcCc
Q 038037 612 LEFLDLGNNQISDTFP-SWLGTLPNLNVLILRSNTFYGIIKEP--------RTDCGFSKLHIIDLSNNRFT 673 (798)
Q Consensus 612 L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~--------~~~~~~~~L~~L~ls~N~l~ 673 (798)
|++|++++|+++...+ ..+..+++|+.|++++|++.+..+.. ..+..+++|+.|| +|+++
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 8888888888875433 46788888888888888887664331 0134577888776 66665
No 145
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.30 E-value=2.7e-10 Score=121.76 Aligned_cols=138 Identities=12% Similarity=0.097 Sum_probs=99.4
Q ss_pred eecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCc
Q 038037 525 LTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPR 604 (798)
Q Consensus 525 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~ 604 (798)
++..-..+|.++..|+.+.+.++... +...+|.++. .|+.+.+. +.++.+...+|.++.+|+.+++..+ ++.+...
T Consensus 253 v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~-~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~ 328 (394)
T 4gt6_A 253 VARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCP-ALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDD 328 (394)
T ss_dssp EEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCT-TCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTT
T ss_pred ceEcccceeeecccccEEecccccce-ecCccccccc-ccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHh
Confidence 33344567888999999999766543 6667787777 69999986 5566677889999999999999865 6667778
Q ss_pred cccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcC
Q 038037 605 SLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRF 672 (798)
Q Consensus 605 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l 672 (798)
+|.+|.+|+.+.+..+ ++.+...+|.++++|+.+++.++..... .+....+|+.+.+..+.+
T Consensus 329 aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~~-----~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 329 AFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQWN-----AISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHHH-----TCBCCCCC----------
T ss_pred HhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeehh-----hhhccCCCCEEEeCCCCE
Confidence 8999999999999755 7767778999999999999998865432 235567888888776654
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.26 E-value=2.5e-10 Score=121.99 Aligned_cols=109 Identities=15% Similarity=0.219 Sum_probs=64.9
Q ss_pred ccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCC
Q 038037 531 SWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCS 610 (798)
Q Consensus 531 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~ 610 (798)
.+|.+++.|+.+.+. +.++.+...+|.++. +|+.+++..+ ++.+...+|.++.+|+.+.+..+ ++.+...+|.+|+
T Consensus 282 ~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~-~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~ 357 (394)
T 4gt6_A 282 GAFMNCPALQDIEFS-SRITELPESVFAGCI-SLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCT 357 (394)
T ss_dssp TTTTTCTTCCEEECC-TTCCEECTTTTTTCT-TCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCT
T ss_pred cccccccccccccCC-CcccccCceeecCCC-CcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCC
Confidence 345556666666664 344445555666665 5777777643 55566677888888888888654 5656667788888
Q ss_pred CCcEEeCCCCcCCccCCcccCCCCCCCEEEccCccc
Q 038037 611 KLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTF 646 (798)
Q Consensus 611 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l 646 (798)
+|+.+++.++.... ..|..+.+|+.+.+..|.+
T Consensus 358 ~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 358 ALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred CCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 88888887775431 3566677777777766543
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.20 E-value=1.4e-12 Score=137.25 Aligned_cols=167 Identities=20% Similarity=0.197 Sum_probs=94.1
Q ss_pred CCCCcEEEccCCCCCCCCchhhhcC-----CCCcEEEccCCCCCCCccccCCCchHHHHhcCCCCCEEEccCCccCCCCc
Q 038037 93 LLRLSYLNLSGASLSGQIPSEILEF-----SNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIP 167 (798)
Q Consensus 93 l~~L~~L~Ls~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~ 167 (798)
.++|++|+|++|.++......+... ++|++|++++|.+.. .........+++|++|++++|.++....
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~-------~~~~~l~~~L~~L~~L~Ls~n~l~~~~~ 143 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDP-------AGLRTLLPVFLRARKLGLQLNSLGPEAC 143 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCH-------HHHHHTHHHHHTEEEEECCSSCCCHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCH-------HHHHHHHHHHHhccHhhcCCCCCCHHHH
Confidence 3567777777777653333333222 567777777776322 1222333344567777777776654333
Q ss_pred hhc-----cCCCCCCEEeccccccCccC----cccccCCCCCcEEEccCCCCCCcc----chhccCCCCCCEEecCCCcC
Q 038037 168 HNL-----ANLSSLSFVSLRNCELEGRI----LSSFGNLSKLLHLDLSLNELRGEL----LVSIGNLHSLKELDLSANIL 234 (798)
Q Consensus 168 ~~~-----~~l~~L~~L~l~~~~l~~~~----~~~~~~l~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~L~~n~l 234 (798)
..+ ...+.|++|++++|.++... ...+...++|++|+|++|.+.+.. ...+...++|++|++++|.+
T Consensus 144 ~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i 223 (372)
T 3un9_A 144 KDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA 223 (372)
T ss_dssp HHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCC
T ss_pred HHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCC
Confidence 333 23466777777777665422 223355667777777777765432 34455566777777777776
Q ss_pred CCc----ccccccCCCCCCEEECcCCcCCCCCcccc
Q 038037 235 SSE----LPTSIGNLSSLKKLDLSQNRFFSELPTSI 266 (798)
Q Consensus 235 ~~~----~~~~~~~l~~L~~L~L~~n~i~~~~~~~~ 266 (798)
++. ++.++...++|++|+|++|.+.......+
T Consensus 224 ~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 224 GDTAALALARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp CHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 643 22333445667777777776654433333
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.20 E-value=4.9e-11 Score=125.36 Aligned_cols=100 Identities=19% Similarity=0.175 Sum_probs=49.7
Q ss_pred cccCCCccEEEcCC-CcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCC
Q 038037 582 FIKESRLGVIDLSH-NLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFS 660 (798)
Q Consensus 582 ~~~l~~L~~L~Ls~-N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~ 660 (798)
+..+++|++|+|++ |.|+++.+..|.++++|++|+|++|+|+++.|..|.++++|+.|+|++|+|+++.+..+ ..++
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~--~~~~ 104 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTV--QGLS 104 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTT--CSCC
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHc--ccCC
Confidence 44445555555553 55554444455555555555555555555555555555555555555555554433322 2222
Q ss_pred cccEEEccCCcCcCCCChhhhhcc
Q 038037 661 KLHIIDLSNNRFTGKLPSKSFLCW 684 (798)
Q Consensus 661 ~L~~L~ls~N~l~~~~p~~~~~~~ 684 (798)
|+.|++++|++.+.+...+|..|
T Consensus 105 -L~~l~l~~N~~~c~c~l~~~~~~ 127 (347)
T 2ifg_A 105 -LQELVLSGNPLHCSCALRWLQRW 127 (347)
T ss_dssp -CCEEECCSSCCCCCGGGHHHHHH
T ss_pred -ceEEEeeCCCccCCCccHHHHHH
Confidence 55555555555555444444433
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.15 E-value=1.2e-12 Score=137.80 Aligned_cols=187 Identities=21% Similarity=0.185 Sum_probs=127.0
Q ss_pred cCCCCeEEcCCCCCCCCC---Cchhcc-CCCCCcEEEccCCCCCCCCchhh-hcCCCCcEEEccCCCCCCCccccCCCch
Q 038037 68 LVHLEWLNLAFNDFNSSE---IPPEII-NLLRLSYLNLSGASLSGQIPSEI-LEFSNLVSLDLSLNDGPGGRLELQKPNL 142 (798)
Q Consensus 68 ~~~L~~L~L~~~~~~~~~---l~~~~~-~l~~L~~L~Ls~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~l 142 (798)
+++|++|+|++|.++... +...+. ...+|++|+|++|.+++.....+ ..+++|++|++++|.+.+... ..+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~----~~L 146 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEAC----KDL 146 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHH----HHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHH----HHH
Confidence 578999999999886531 112223 23689999999998864333333 345789999999998533221 123
Q ss_pred HHHH-hcCCCCCEEEccCCccCCC----CchhccCCCCCCEEeccccccCccC----cccccCCCCCcEEEccCCCCCCc
Q 038037 143 ANLV-EKLSNLETLDLGDASIRST----IPHNLANLSSLSFVSLRNCELEGRI----LSSFGNLSKLLHLDLSLNELRGE 213 (798)
Q Consensus 143 ~~~~-~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~l~~~~----~~~~~~l~~L~~L~Ls~n~i~~~ 213 (798)
...+ ...++|++|++++|.++.. ++.++...++|++|++++|.++... ...+...++|++|+|++|.|++.
T Consensus 147 ~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~ 226 (372)
T 3un9_A 147 RDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDT 226 (372)
T ss_dssp HHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH
T ss_pred HHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH
Confidence 3334 3478899999999988653 3344577899999999999987543 44567788999999999999864
Q ss_pred c----chhccCCCCCCEEecCCCcCCCcccccccCCCC-----CCEEE--CcCCcC
Q 038037 214 L----LVSIGNLHSLKELDLSANILSSELPTSIGNLSS-----LKKLD--LSQNRF 258 (798)
Q Consensus 214 ~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-----L~~L~--L~~n~i 258 (798)
. ...+...++|++|++++|.+++.....+..+.. |+.+. +..+.+
T Consensus 227 g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~ 282 (372)
T 3un9_A 227 AALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV 282 (372)
T ss_dssp HHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----C
T ss_pred HHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCcc
Confidence 3 334556789999999999998655555543321 66666 555554
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.10 E-value=1.6e-10 Score=121.44 Aligned_cols=102 Identities=22% Similarity=0.265 Sum_probs=53.7
Q ss_pred EEeecc-eeecccCccccCCCCCCEEEeeC-cccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCC
Q 038037 518 YLVSNN-SLTGEIPSWICNLNTLKNLVLSH-NSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSH 595 (798)
Q Consensus 518 l~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~ 595 (798)
++++++ ++++ +|. +..+++|++|+|++ |.++++.+..|..++ +|++|+|++|+|+++.|..|.++++|++|+|++
T Consensus 13 v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 13 LRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLG-ELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp EECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCC-CCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhcccc-CCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 444554 4543 344 55555555555554 555555445555554 455555555555555555555555555555555
Q ss_pred CcccccCCccccCCCCCcEEeCCCCcCC
Q 038037 596 NLFQGRIPRSLVNCSKLEFLDLGNNQIS 623 (798)
Q Consensus 596 N~i~~~~~~~~~~l~~L~~L~L~~N~i~ 623 (798)
|+|+++.+..|..++ |+.|+|++|.+.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 555544444444433 555555555554
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.99 E-value=3.9e-08 Score=104.45 Aligned_cols=117 Identities=14% Similarity=0.137 Sum_probs=69.3
Q ss_pred ccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCC
Q 038037 531 SWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCS 610 (798)
Q Consensus 531 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~ 610 (798)
..|.++..|+.+.+..+ ++.+...+|.++. +|+.+.+..+ +..+...+|.++++|+.+.+.++.++.+.+.+|.+|.
T Consensus 234 ~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~-~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~ 310 (379)
T 4h09_A 234 GAFYGMKALDEIAIPKN-VTSIGSFLLQNCT-ALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCV 310 (379)
T ss_dssp TTTTTCSSCCEEEECTT-CCEECTTTTTTCT-TCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCT
T ss_pred ccccCCccceEEEcCCC-ccEeCccccceee-hhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCC
Confidence 34555666666666554 4434445555554 4666666433 4445555666677777777766666656666677777
Q ss_pred CCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCC
Q 038037 611 KLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKE 652 (798)
Q Consensus 611 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 652 (798)
+|+.+.|..+ ++.+...+|.++.+|+++.+..+ ++.+...
T Consensus 311 ~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~ 350 (379)
T 4h09_A 311 KLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESG 350 (379)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred CCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchh
Confidence 7777776543 55555566666666766666543 4444333
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.92 E-value=1.1e-07 Score=100.92 Aligned_cols=102 Identities=14% Similarity=0.123 Sum_probs=78.5
Q ss_pred CccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCC
Q 038037 530 PSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNC 609 (798)
Q Consensus 530 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l 609 (798)
..+|.++.+|+.+.+..+ +..+...+|.++. +|+.+.+.++.++.+...+|.++.+|+.++|..+ ++.+...+|.+|
T Consensus 256 ~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~-~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C 332 (379)
T 4h09_A 256 SFLLQNCTALKTLNFYAK-VKTVPYLLCSGCS-NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNC 332 (379)
T ss_dssp TTTTTTCTTCCEEEECCC-CSEECTTTTTTCT-TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred ccccceeehhcccccccc-ceecccccccccc-ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCC
Confidence 456777788888888654 5545566777776 6888888888888787888999999999999755 666777889999
Q ss_pred CCCcEEeCCCCcCCccCCcccCCCCC
Q 038037 610 SKLEFLDLGNNQISDTFPSWLGTLPN 635 (798)
Q Consensus 610 ~~L~~L~L~~N~i~~~~~~~~~~l~~ 635 (798)
++|+.+.+..+ ++.+...+|.++..
T Consensus 333 ~~L~~i~ip~~-v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 333 KALSTISYPKS-ITLIESGAFEGSSI 357 (379)
T ss_dssp TTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred CCCCEEEECCc-cCEEchhHhhCCCC
Confidence 99999988755 66677778887643
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.78 E-value=3.5e-09 Score=110.19 Aligned_cols=62 Identities=21% Similarity=0.275 Sum_probs=26.9
Q ss_pred CCCCcEEEccCCCCCCccchhcc---CCCCCCEEecCCCcCCCcc----cccccCCCCCCEEECcCCcC
Q 038037 197 LSKLLHLDLSLNELRGELLVSIG---NLHSLKELDLSANILSSEL----PTSIGNLSSLKKLDLSQNRF 258 (798)
Q Consensus 197 l~~L~~L~Ls~n~i~~~~~~~~~---~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~i 258 (798)
+++|++|++.+|.+.+.....+. .+++|++|+|+.|.+.+.. +..+..+++|+.|++++|.+
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 44555555555544422222221 2445555555555544321 11222345555555555544
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.67 E-value=2.8e-08 Score=103.36 Aligned_cols=203 Identities=21% Similarity=0.254 Sum_probs=131.7
Q ss_pred CCeEEEEEcCCCCccC-cc----c-CcccccccCCCCeEEcCCCCCC--------CCCCchhccCCCCCcEEEccCCCCC
Q 038037 42 TGHVIKLDLSNSCLFG-SI----N-SSSSLFKLVHLEWLNLAFNDFN--------SSEIPPEIINLLRLSYLNLSGASLS 107 (798)
Q Consensus 42 ~~~l~~L~l~~~~~~~-~~----~-~~~~l~~~~~L~~L~L~~~~~~--------~~~l~~~~~~l~~L~~L~Ls~~~~~ 107 (798)
..+|+.|.+......+ .. . ...+..++++|+.|.+...... ...+...+..+++|+.|+|++|.-.
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 3457777776544331 11 0 0124567899999999765332 1124566778999999999988422
Q ss_pred CCCchhhhcCCCCcEEEccCCCCCCCccccCCCchHHHHh--cCCCCCEEEccC--CccCCC-----Cchhc--cCCCCC
Q 038037 108 GQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVE--KLSNLETLDLGD--ASIRST-----IPHNL--ANLSSL 176 (798)
Q Consensus 108 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~--~l~~L~~L~l~~--~~~~~~-----~~~~~--~~l~~L 176 (798)
.++. + .+++|++|++..|.+.. .....+. .+++|++|+++. +...+. +...+ ..+++|
T Consensus 186 -~l~~-~-~~~~L~~L~L~~~~l~~--------~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~L 254 (362)
T 2ra8_A 186 -SIGK-K-PRPNLKSLEIISGGLPD--------SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNL 254 (362)
T ss_dssp -BCCS-C-BCTTCSEEEEECSBCCH--------HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTC
T ss_pred -eecc-c-cCCCCcEEEEecCCCCh--------HHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCc
Confidence 3343 4 38899999999876322 1222333 799999999863 221111 11122 247899
Q ss_pred CEEeccccccCccCcccc---cCCCCCcEEEccCCCCCCccc----hhccCCCCCCEEecCCCcCCCcccccccC-CCCC
Q 038037 177 SFVSLRNCELEGRILSSF---GNLSKLLHLDLSLNELRGELL----VSIGNLHSLKELDLSANILSSELPTSIGN-LSSL 248 (798)
Q Consensus 177 ~~L~l~~~~l~~~~~~~~---~~l~~L~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L 248 (798)
++|++++|.+.......+ ..+++|++|+|+.|.+.+... ..+..+++|+.|++++|.+++.....+.. + .
T Consensus 255 r~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g 332 (362)
T 2ra8_A 255 KWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--P 332 (362)
T ss_dssp CEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--C
T ss_pred CEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--C
Confidence 999999998864333333 257899999999999986433 33355799999999999988654444443 2 4
Q ss_pred CEEECcCCc
Q 038037 249 KKLDLSQNR 257 (798)
Q Consensus 249 ~~L~L~~n~ 257 (798)
..++++.++
T Consensus 333 ~~~~~~~~~ 341 (362)
T 2ra8_A 333 MKIDVSDSQ 341 (362)
T ss_dssp SEEECCSBC
T ss_pred CEEEecCCc
Confidence 567887775
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.34 E-value=1.8e-07 Score=87.63 Aligned_cols=61 Identities=20% Similarity=0.281 Sum_probs=25.8
Q ss_pred CCCcEEEccCCCCCCc----cchhccCCCCCCEEec--CCCcCCCc----ccccccCCCCCCEEECcCCcC
Q 038037 198 SKLLHLDLSLNELRGE----LLVSIGNLHSLKELDL--SANILSSE----LPTSIGNLSSLKKLDLSQNRF 258 (798)
Q Consensus 198 ~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L--~~n~l~~~----~~~~~~~l~~L~~L~L~~n~i 258 (798)
+.|++|+|++|.|.+. +...+...++|++|++ ++|.+... +...+...+.|++|++++|.+
T Consensus 93 ~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 93 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred CCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 4444555555544432 1223333444555555 44444432 112223334455555544443
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.34 E-value=1.4e-07 Score=88.26 Aligned_cols=69 Identities=13% Similarity=0.096 Sum_probs=29.0
Q ss_pred cCCCCCcEEEccCC-CCCCC----CchhhhcCCCCcEEEccCCCCCCCccccCCCchHHHHhcCCCCCEEEccCCccC
Q 038037 91 INLLRLSYLNLSGA-SLSGQ----IPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIR 163 (798)
Q Consensus 91 ~~l~~L~~L~Ls~~-~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~ 163 (798)
...+.|++|+|++| .+... +...+...++|++|++++|.+.+... ..+...+...++|++|++++|.+.
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~----~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVA----FALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHH----HHHHHHHHHCSSCCEEECCSSCCC
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHH----HHHHHHHHhCCCcCEEECcCCcCC
Confidence 34444555555554 44321 12223334455555555554322111 123333444445555555555443
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.13 E-value=3e-07 Score=90.29 Aligned_cols=99 Identities=20% Similarity=0.220 Sum_probs=58.0
Q ss_pred eecCCCccc---cccccccccCCCccEEEcCCCccccc--CCccccCCCCCcEEeCCCCcCCccC-CcccCCCCCCCEEE
Q 038037 567 LDLQGNNFF---GTIPDTFIKESRLGVIDLSHNLFQGR--IPRSLVNCSKLEFLDLGNNQISDTF-PSWLGTLPNLNVLI 640 (798)
Q Consensus 567 L~L~~n~i~---~~~~~~~~~l~~L~~L~Ls~N~i~~~--~~~~~~~l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~ 640 (798)
++++.|... ...+....++++|+.|+|++|+|+++ +|..+..+++|+.|+|++|+|++.. ...+..+ +|++|+
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~ 226 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELW 226 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEE
Confidence 555666432 11222234567777788888777763 3355567777888888888777541 1223333 788888
Q ss_pred ccCcccccccCCC-----CCcCCCCcccEEE
Q 038037 641 LRSNTFYGIIKEP-----RTDCGFSKLHIID 666 (798)
Q Consensus 641 L~~N~l~~~~~~~-----~~~~~~~~L~~L~ 666 (798)
|++|++.+..+.. .....+++|+.||
T Consensus 227 L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 227 LDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp CTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred ccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 8888876532210 0123467777776
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.12 E-value=5.1e-07 Score=88.64 Aligned_cols=94 Identities=23% Similarity=0.231 Sum_probs=63.8
Q ss_pred cccCCCccE--EEcCCCccc---ccCCccccCCCCCcEEeCCCCcCCcc--CCcccCCCCCCCEEEccCcccccccCCCC
Q 038037 582 FIKESRLGV--IDLSHNLFQ---GRIPRSLVNCSKLEFLDLGNNQISDT--FPSWLGTLPNLNVLILRSNTFYGIIKEPR 654 (798)
Q Consensus 582 ~~~l~~L~~--L~Ls~N~i~---~~~~~~~~~l~~L~~L~L~~N~i~~~--~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 654 (798)
|...+.|+. ++++.|... +..+....++++|++|+|++|+|+++ +|..+..+++|+.|+|++|.|.++.. ..
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~-l~ 215 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE-LD 215 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGG-GG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchh-hh
Confidence 444455555 677777443 22222235678899999999998874 34566688899999999999887621 11
Q ss_pred CcCCCCcccEEEccCCcCcCCCC
Q 038037 655 TDCGFSKLHIIDLSNNRFTGKLP 677 (798)
Q Consensus 655 ~~~~~~~L~~L~ls~N~l~~~~p 677 (798)
.+..+ +|+.|++++|++.+.+|
T Consensus 216 ~l~~l-~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 216 KIKGL-KLEELWLDGNSLCDTFR 237 (267)
T ss_dssp GGTTS-CCSEEECTTSTTGGGCS
T ss_pred hcccC-CcceEEccCCcCccccC
Confidence 22233 88999999999887776
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.96 E-value=3.4e-06 Score=76.44 Aligned_cols=84 Identities=13% Similarity=0.136 Sum_probs=51.4
Q ss_pred CCCCEEeccccccCccCcccccCCCCCcEEEccCCC-CCCccchhccCC----CCCCEEecCCCc-CCCcccccccCCCC
Q 038037 174 SSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNE-LRGELLVSIGNL----HSLKELDLSANI-LSSELPTSIGNLSS 247 (798)
Q Consensus 174 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l----~~L~~L~L~~n~-l~~~~~~~~~~l~~ 247 (798)
-.|+.|++++|.++......+..+++|++|+|++|. |++.....++.+ ++|++|++++|. +++..-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 356666666666665555556666777777777663 554444445543 357777777764 65544445566677
Q ss_pred CCEEECcCCc
Q 038037 248 LKKLDLSQNR 257 (798)
Q Consensus 248 L~~L~L~~n~ 257 (798)
|++|++++|.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 7777777764
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.93 E-value=3.4e-06 Score=76.48 Aligned_cols=34 Identities=3% Similarity=0.051 Sum_probs=18.0
Q ss_pred CCcEEEccCCCCCCCCchhhhcCCCCcEEEccCC
Q 038037 95 RLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLN 128 (798)
Q Consensus 95 ~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~ 128 (798)
+|++||+++|.+++..-..+..+++|++|+|++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 4555555555555444444455555555555555
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.32 E-value=0.00022 Score=61.60 Aligned_cols=55 Identities=24% Similarity=0.295 Sum_probs=31.3
Q ss_pred EEEcCCCccc-ccCchhhhcccCCCeEeCcCCccccCCCccccCCCCCCeEeCCCCcC
Q 038037 740 GIILSSNRFD-GVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRF 796 (798)
Q Consensus 740 ~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 796 (798)
.++-++++++ ..+|..+. ++|+.|+|++|+|+.+.++.|..+++|+.|+|++|++
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4555666665 12232221 2466666666666666666666666666666666665
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.07 E-value=0.00028 Score=65.15 Aligned_cols=15 Identities=27% Similarity=0.180 Sum_probs=7.4
Q ss_pred CCCCcEEEccCCCCC
Q 038037 197 LSKLLHLDLSLNELR 211 (798)
Q Consensus 197 l~~L~~L~Ls~n~i~ 211 (798)
-+.|++|+|++|.|.
T Consensus 97 N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 97 SPSLRVLNVESNFLT 111 (197)
T ss_dssp CSSCCEEECCSSBCC
T ss_pred CCccCeEecCCCcCC
Confidence 344555555555544
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.94 E-value=0.00047 Score=63.66 Aligned_cols=67 Identities=13% Similarity=0.168 Sum_probs=30.4
Q ss_pred CCCCcEEEccCC-CCCCC----CchhhhcCCCCcEEEccCCCCCCCccccCCCchHHHHhcCCCCCEEEccCCccC
Q 038037 93 LLRLSYLNLSGA-SLSGQ----IPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIR 163 (798)
Q Consensus 93 l~~L~~L~Ls~~-~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~ 163 (798)
-+.|++|+|+++ .+.+. +..++..-..|+.|+|++|.+.+... ..+.+.+..-+.|++|+|++|.|.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga----~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEA----RGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHH----TTHHHHHHHCSSCCEEECCSSBCC
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHH----HHHHHHHhcCCccCeEecCCCcCC
Confidence 344555555543 33311 22233334455555555555332211 234444555555555555555554
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.73 E-value=0.0018 Score=55.80 Aligned_cols=44 Identities=20% Similarity=0.298 Sum_probs=39.5
Q ss_pred ccCCccCceeEEEcCCCcccccCchhhhcccCCCeEeCcCCccc
Q 038037 730 TYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQ 773 (798)
Q Consensus 730 ~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 773 (798)
.+..++++++.|+|++|+|+.+.++.|..+++|+.|+|++|.+.
T Consensus 25 vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 25 LPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp SCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 34467889999999999999999999999999999999999764
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=71.46 E-value=6.8 Score=31.25 Aligned_cols=45 Identities=16% Similarity=0.158 Sum_probs=22.3
Q ss_pred ccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccC
Q 038037 598 FQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRS 643 (798)
Q Consensus 598 i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~ 643 (798)
++.+...+|.+|++|+.+.+-.+ ++.+...+|.++.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33344445555555555555433 3334445555555555555544
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=59.63 E-value=9.7 Score=30.32 Aligned_cols=48 Identities=19% Similarity=0.192 Sum_probs=29.7
Q ss_pred CccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCC
Q 038037 572 NNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNN 620 (798)
Q Consensus 572 n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N 620 (798)
..++.+...+|.++.+|+.+.|-.+ ++.+-..+|.+|.+|+.+.+.+.
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 3455555666777777777777654 34355566777777777766543
Done!