Query 038038
Match_columns 150
No_of_seqs 105 out of 1110
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 06:55:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038038.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038038hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00519 Lipase_3 Lipase (class 100.0 1.3E-34 2.9E-39 221.2 15.9 136 2-147 57-200 (229)
2 PLN02847 triacylglycerol lipas 100.0 3.2E-34 7E-39 240.3 13.6 140 2-147 172-320 (633)
3 PF01764 Lipase_3: Lipase (cla 100.0 4.2E-34 9E-39 202.4 11.3 128 11-146 1-138 (140)
4 PLN02934 triacylglycerol lipas 100.0 2.1E-32 4.4E-37 226.7 14.7 139 2-146 213-400 (515)
5 PLN02310 triacylglycerol lipas 100.0 2.1E-32 4.6E-37 222.7 14.0 130 8-147 132-281 (405)
6 PLN02454 triacylglycerol lipas 100.0 6.1E-32 1.3E-36 220.4 15.1 140 7-149 129-306 (414)
7 PLN02408 phospholipase A1 100.0 4.3E-32 9.3E-37 218.8 14.0 137 8-149 118-275 (365)
8 PLN02162 triacylglycerol lipas 100.0 5.8E-32 1.3E-36 222.2 14.5 137 5-147 195-358 (475)
9 PLN02719 triacylglycerol lipas 100.0 1.9E-31 4E-36 221.1 15.1 142 8-149 213-379 (518)
10 PLN03037 lipase class 3 family 100.0 1.5E-31 3.2E-36 222.0 14.0 138 7-149 234-393 (525)
11 PLN02802 triacylglycerol lipas 100.0 2.2E-31 4.7E-36 220.6 13.5 136 7-147 250-403 (509)
12 PLN00413 triacylglycerol lipas 100.0 2.3E-31 4.9E-36 219.2 13.5 136 6-147 198-364 (479)
13 PLN02324 triacylglycerol lipas 100.0 4.4E-31 9.5E-36 215.2 14.2 141 7-147 131-298 (415)
14 PLN02753 triacylglycerol lipas 100.0 4.6E-31 1E-35 219.3 13.6 142 7-148 226-392 (531)
15 KOG4569 Predicted lipase [Lipi 100.0 3.4E-31 7.4E-36 213.4 12.0 143 2-148 99-246 (336)
16 PLN02761 lipase class 3 family 100.0 7.1E-31 1.5E-35 218.0 12.8 142 7-148 211-375 (527)
17 PLN02571 triacylglycerol lipas 100.0 1.6E-30 3.4E-35 212.3 13.7 137 7-147 144-308 (413)
18 cd00741 Lipase Lipase. Lipase 99.9 3E-22 6.5E-27 144.3 12.0 96 45-146 1-101 (153)
19 PF11187 DUF2974: Protein of u 99.6 3.2E-15 6.8E-20 114.6 7.9 116 6-145 35-155 (224)
20 KOG2088 Predicted lipase/calmo 99.5 4.3E-15 9.3E-20 126.9 0.6 142 3-144 174-324 (596)
21 KOG4540 Putative lipase essent 99.1 3.5E-10 7.6E-15 88.9 6.9 69 58-141 262-341 (425)
22 COG5153 CVT17 Putative lipase 99.1 3.5E-10 7.6E-15 88.9 6.9 69 58-141 262-341 (425)
23 COG3675 Predicted lipase [Lipi 99.0 1.3E-10 2.9E-15 90.9 3.3 118 3-126 88-223 (332)
24 COG3675 Predicted lipase [Lipi 98.6 3.4E-08 7.4E-13 77.6 2.4 122 5-145 182-307 (332)
25 KOG2088 Predicted lipase/calmo 98.2 4E-07 8.6E-12 78.5 -0.1 126 3-148 312-446 (596)
26 PF01083 Cutinase: Cutinase; 97.8 0.00017 3.7E-09 53.5 8.9 95 46-146 55-153 (179)
27 PF07819 PGAP1: PGAP1-like pro 97.8 8.9E-05 1.9E-09 56.9 7.1 57 58-121 66-127 (225)
28 PF05057 DUF676: Putative seri 97.6 0.00018 3.8E-09 54.8 6.6 113 6-120 2-128 (217)
29 COG2267 PldB Lysophospholipase 97.6 0.00017 3.7E-09 57.5 6.1 68 43-121 78-145 (298)
30 PRK10749 lysophospholipase L2; 97.4 0.00039 8.4E-09 55.7 6.1 43 50-92 109-151 (330)
31 KOG2564 Predicted acetyltransf 97.4 0.00021 4.5E-09 56.6 4.3 38 54-92 129-166 (343)
32 PF06259 Abhydrolase_8: Alpha/ 97.4 0.0016 3.5E-08 48.3 8.8 85 51-146 87-175 (177)
33 TIGR01607 PST-A Plasmodium sub 97.4 0.00032 6.9E-09 56.5 5.3 49 45-93 95-163 (332)
34 PLN02733 phosphatidylcholine-s 97.4 0.00053 1.2E-08 57.6 6.7 64 54-123 144-207 (440)
35 PHA02857 monoglyceride lipase; 97.2 0.00081 1.8E-08 51.9 5.9 38 55-92 80-117 (276)
36 cd00707 Pancreat_lipase_like P 97.1 0.0011 2.4E-08 52.2 5.8 40 55-94 93-134 (275)
37 PRK10985 putative hydrolase; P 97.1 0.0018 3.8E-08 51.8 7.0 55 56-118 115-169 (324)
38 KOG1455 Lysophospholipase [Lip 97.1 0.00052 1.1E-08 54.7 3.7 41 52-92 107-149 (313)
39 PF00975 Thioesterase: Thioest 97.1 0.0036 7.8E-08 46.9 7.9 54 58-118 52-105 (229)
40 PF02450 LCAT: Lecithin:choles 97.1 0.0021 4.6E-08 53.1 7.1 67 53-124 101-167 (389)
41 PF00561 Abhydrolase_1: alpha/ 97.0 0.0022 4.8E-08 47.1 6.0 36 57-92 29-64 (230)
42 PF12697 Abhydrolase_6: Alpha/ 97.0 0.0033 7.2E-08 45.4 6.9 33 60-92 54-86 (228)
43 PRK11126 2-succinyl-6-hydroxy- 97.0 0.0018 3.9E-08 48.7 5.5 36 58-93 52-87 (242)
44 PLN02652 hydrolase; alpha/beta 97.0 0.0013 2.9E-08 54.4 4.9 40 51-90 187-226 (395)
45 PRK11071 esterase YqiA; Provis 96.9 0.0019 4.2E-08 48.0 5.3 35 58-92 47-81 (190)
46 PLN02298 hydrolase, alpha/beta 96.9 0.002 4.2E-08 51.3 5.7 40 52-91 112-153 (330)
47 TIGR02427 protocat_pcaD 3-oxoa 96.9 0.002 4.4E-08 47.4 5.2 31 62-92 69-99 (251)
48 PLN02385 hydrolase; alpha/beta 96.8 0.0027 5.8E-08 51.1 5.7 40 53-92 141-182 (349)
49 PLN02511 hydrolase 96.8 0.0039 8.6E-08 51.3 6.8 38 55-92 156-193 (388)
50 PLN02965 Probable pheophorbida 96.8 0.0023 5E-08 49.0 5.1 33 60-92 59-92 (255)
51 PRK13604 luxD acyl transferase 96.8 0.0037 8E-08 50.2 6.3 55 56-124 93-147 (307)
52 TIGR03695 menH_SHCHC 2-succiny 96.8 0.0029 6.4E-08 46.4 5.4 32 62-93 60-91 (251)
53 PLN02824 hydrolase, alpha/beta 96.8 0.0025 5.4E-08 49.7 5.2 33 61-93 91-123 (294)
54 TIGR01836 PHA_synth_III_C poly 96.8 0.0039 8.5E-08 50.3 6.3 34 58-91 122-155 (350)
55 PRK10673 acyl-CoA esterase; Pr 96.8 0.0032 6.9E-08 47.6 5.5 28 65-92 74-101 (255)
56 TIGR02240 PHA_depoly_arom poly 96.7 0.0035 7.6E-08 48.5 5.3 33 60-92 79-111 (276)
57 PRK10566 esterase; Provisional 96.7 0.0053 1.1E-07 46.6 6.1 37 55-91 88-126 (249)
58 TIGR03611 RutD pyrimidine util 96.6 0.0044 9.5E-08 46.2 5.3 31 62-92 70-100 (257)
59 TIGR01250 pro_imino_pep_2 prol 96.6 0.0047 1E-07 46.6 5.4 34 60-93 84-117 (288)
60 PF05990 DUF900: Alpha/beta hy 96.6 0.02 4.3E-07 44.1 8.8 134 5-141 15-166 (233)
61 PF05728 UPF0227: Uncharacteri 96.6 0.0079 1.7E-07 45.0 6.3 36 58-93 45-80 (187)
62 PRK00870 haloalkane dehalogena 96.6 0.0054 1.2E-07 48.1 5.5 33 60-92 103-135 (302)
63 KOG3724 Negative regulator of 96.5 0.0058 1.3E-07 54.4 5.8 42 71-119 181-222 (973)
64 PF07859 Abhydrolase_3: alpha/ 96.5 0.011 2.3E-07 43.8 6.3 42 55-96 49-95 (211)
65 TIGR03056 bchO_mg_che_rel puta 96.4 0.0056 1.2E-07 46.5 4.9 32 61-92 84-115 (278)
66 TIGR03101 hydr2_PEP hydrolase, 96.4 0.015 3.2E-07 45.8 7.3 36 56-92 84-119 (266)
67 PLN02442 S-formylglutathione h 96.4 0.0076 1.6E-07 47.5 5.3 39 54-92 125-163 (283)
68 PF06028 DUF915: Alpha/beta hy 96.4 0.018 4E-07 45.1 7.3 56 58-119 89-145 (255)
69 PLN02211 methyl indole-3-aceta 96.3 0.0082 1.8E-07 46.9 5.3 22 71-92 86-107 (273)
70 PRK03204 haloalkane dehalogena 96.3 0.0084 1.8E-07 47.0 5.2 34 59-92 88-121 (286)
71 TIGR03100 hydr1_PEP hydrolase, 96.3 0.011 2.4E-07 46.1 5.7 38 54-91 81-119 (274)
72 TIGR03343 biphenyl_bphD 2-hydr 96.3 0.0064 1.4E-07 46.7 4.3 32 62-93 91-122 (282)
73 PF12695 Abhydrolase_5: Alpha/ 96.3 0.0093 2E-07 41.0 4.8 23 70-92 59-81 (145)
74 PF05277 DUF726: Protein of un 96.2 0.078 1.7E-06 43.3 10.6 67 70-141 218-288 (345)
75 PF00151 Lipase: Lipase; Inte 96.2 0.013 2.7E-07 47.6 5.9 50 46-95 119-173 (331)
76 TIGR01840 esterase_phb esteras 96.2 0.011 2.4E-07 44.3 5.1 35 58-92 79-115 (212)
77 TIGR01838 PHA_synth_I poly(R)- 96.2 0.021 4.6E-07 49.2 7.2 36 56-91 246-281 (532)
78 TIGR01249 pro_imino_pep_1 prol 96.1 0.013 2.9E-07 46.2 5.5 36 58-93 81-116 (306)
79 PRK03592 haloalkane dehalogena 96.0 0.015 3.3E-07 45.3 5.4 23 70-92 91-113 (295)
80 PF00326 Peptidase_S9: Prolyl 96.0 0.015 3.3E-07 43.3 5.2 37 55-91 45-83 (213)
81 PRK14875 acetoin dehydrogenase 96.0 0.015 3.3E-07 46.5 5.4 35 58-92 183-217 (371)
82 TIGR03230 lipo_lipase lipoprot 96.0 0.019 4E-07 48.4 6.0 37 56-92 101-139 (442)
83 PLN02894 hydrolase, alpha/beta 96.0 0.019 4.2E-07 47.5 6.1 32 61-92 165-196 (402)
84 TIGR01392 homoserO_Ac_trn homo 96.0 0.017 3.6E-07 46.6 5.5 36 58-93 112-148 (351)
85 PRK11460 putative hydrolase; P 96.0 0.026 5.6E-07 43.2 6.3 35 57-91 86-122 (232)
86 PTZ00472 serine carboxypeptida 95.9 0.033 7.1E-07 47.2 7.4 64 54-118 150-216 (462)
87 KOG1454 Predicted hydrolase/ac 95.9 0.0092 2E-07 48.2 3.7 36 58-93 114-149 (326)
88 COG3319 Thioesterase domains o 95.8 0.022 4.7E-07 44.7 5.2 40 57-96 50-89 (257)
89 TIGR02821 fghA_ester_D S-formy 95.7 0.028 6E-07 43.9 5.6 22 71-92 137-158 (275)
90 KOG4409 Predicted hydrolase/ac 95.7 0.021 4.6E-07 46.5 4.9 39 57-95 145-183 (365)
91 TIGR01738 bioH putative pimelo 95.7 0.019 4.2E-07 42.0 4.4 21 72-92 65-85 (245)
92 PLN02679 hydrolase, alpha/beta 95.7 0.023 5E-07 46.1 5.2 27 65-91 148-174 (360)
93 PLN00021 chlorophyllase 95.5 0.025 5.4E-07 45.5 4.9 23 72-94 126-148 (313)
94 COG0429 Predicted hydrolase of 95.5 0.082 1.8E-06 42.9 7.7 77 1-84 66-160 (345)
95 PRK08775 homoserine O-acetyltr 95.5 0.031 6.6E-07 44.9 5.2 21 73-93 139-159 (343)
96 PLN02578 hydrolase 95.4 0.031 6.7E-07 45.2 5.2 34 56-93 140-173 (354)
97 PRK10349 carboxylesterase BioH 95.4 0.029 6.2E-07 42.7 4.7 21 72-92 74-94 (256)
98 PF10230 DUF2305: Uncharacteri 95.3 0.038 8.2E-07 43.3 5.1 38 55-92 65-104 (266)
99 PLN02517 phosphatidylcholine-s 95.2 0.038 8.3E-07 48.1 5.2 35 55-89 196-230 (642)
100 COG4782 Uncharacterized protei 95.2 0.17 3.7E-06 41.5 8.6 88 56-147 175-269 (377)
101 PF08237 PE-PPE: PE-PPE domain 95.1 0.18 3.9E-06 38.7 8.3 75 70-148 46-141 (225)
102 PRK00175 metX homoserine O-ace 95.1 0.048 1E-06 44.6 5.4 34 60-93 134-168 (379)
103 PF05677 DUF818: Chlamydia CHL 95.1 0.045 9.8E-07 44.6 5.0 44 45-89 186-232 (365)
104 PF00756 Esterase: Putative es 95.0 0.048 1E-06 41.5 4.8 40 52-92 96-135 (251)
105 PRK10162 acetyl esterase; Prov 95.0 0.053 1.2E-06 43.4 5.2 26 71-96 153-178 (318)
106 PF05448 AXE1: Acetyl xylan es 95.0 0.07 1.5E-06 43.1 5.8 57 53-121 154-212 (320)
107 PRK04940 hypothetical protein; 94.9 0.11 2.4E-06 38.6 6.4 22 72-93 60-81 (180)
108 PLN03087 BODYGUARD 1 domain co 94.9 0.057 1.2E-06 46.0 5.5 29 64-92 266-294 (481)
109 PRK07581 hypothetical protein; 94.9 0.07 1.5E-06 42.6 5.6 22 72-93 123-145 (339)
110 PF11288 DUF3089: Protein of u 94.9 0.14 3E-06 39.0 6.9 58 55-116 77-135 (207)
111 PRK06489 hypothetical protein; 94.7 0.079 1.7E-06 42.9 5.5 21 72-92 153-174 (360)
112 PF01674 Lipase_2: Lipase (cla 94.6 0.044 9.5E-07 42.0 3.6 35 56-91 60-94 (219)
113 PF10503 Esterase_phd: Esteras 94.5 0.061 1.3E-06 41.2 4.3 36 58-93 81-118 (220)
114 COG0596 MhpC Predicted hydrola 94.5 0.064 1.4E-06 38.7 4.3 34 60-93 76-109 (282)
115 COG3208 GrsT Predicted thioest 94.5 0.085 1.8E-06 41.0 4.9 53 41-96 46-98 (244)
116 PRK06765 homoserine O-acetyltr 94.4 0.081 1.8E-06 43.8 5.1 37 57-93 145-182 (389)
117 PLN02872 triacylglycerol lipas 94.3 0.11 2.3E-06 43.2 5.6 31 56-87 145-175 (395)
118 PF09752 DUF2048: Uncharacteri 94.2 0.24 5.2E-06 40.5 7.3 36 57-93 161-196 (348)
119 PF00091 Tubulin: Tubulin/FtsZ 94.2 0.18 4E-06 38.2 6.2 56 41-96 93-148 (216)
120 PRK05855 short chain dehydroge 94.2 0.09 1.9E-06 44.6 5.0 21 71-91 93-113 (582)
121 COG0657 Aes Esterase/lipase [L 94.0 0.1 2.2E-06 41.3 4.7 26 71-96 151-176 (312)
122 PF02230 Abhydrolase_2: Phosph 93.8 0.23 4.9E-06 37.3 6.2 37 56-92 88-125 (216)
123 smart00824 PKS_TE Thioesterase 93.8 0.18 3.8E-06 36.4 5.4 29 68-96 60-88 (212)
124 KOG2369 Lecithin:cholesterol a 93.8 0.11 2.4E-06 43.9 4.7 32 54-85 164-195 (473)
125 KOG2382 Predicted alpha/beta h 93.7 0.095 2.1E-06 42.3 4.1 31 53-83 104-134 (315)
126 PRK05077 frsA fermentation/res 93.5 0.23 5.1E-06 41.3 6.3 22 71-92 264-285 (414)
127 PLN03084 alpha/beta hydrolase 93.4 0.24 5.2E-06 41.0 6.1 33 60-92 185-217 (383)
128 TIGR01839 PHA_synth_II poly(R) 93.3 0.43 9.3E-06 41.5 7.6 40 56-95 272-312 (560)
129 PLN02980 2-oxoglutarate decarb 93.1 0.17 3.7E-06 49.2 5.4 32 61-92 1434-1465(1655)
130 PF03403 PAF-AH_p_II: Platelet 93.1 0.095 2E-06 43.3 3.3 20 72-91 228-247 (379)
131 COG1075 LipA Predicted acetylt 93.0 0.26 5.6E-06 40.0 5.6 60 55-122 110-169 (336)
132 COG2945 Predicted hydrolase of 93.0 0.22 4.7E-06 37.7 4.7 38 56-93 86-124 (210)
133 COG3458 Acetyl esterase (deace 92.9 0.12 2.6E-06 41.1 3.4 41 52-92 154-196 (321)
134 COG1647 Esterase/lipase [Gener 92.1 0.48 1E-05 36.6 5.7 37 55-93 69-106 (243)
135 TIGR03502 lipase_Pla1_cef extr 91.9 0.39 8.5E-06 43.4 5.7 24 69-92 552-575 (792)
136 TIGR00976 /NonD putative hydro 91.8 0.29 6.2E-06 42.2 4.7 38 55-92 79-117 (550)
137 KOG2385 Uncharacterized conser 91.7 1.6 3.6E-05 37.6 8.9 48 70-123 445-493 (633)
138 COG3571 Predicted hydrolase of 91.6 0.43 9.3E-06 35.4 4.7 29 67-95 84-112 (213)
139 COG3545 Predicted esterase of 91.6 1.3 2.8E-05 33.0 7.2 32 61-93 49-80 (181)
140 KOG1838 Alpha/beta hydrolase [ 91.6 0.27 5.7E-06 41.1 4.0 54 55-116 181-234 (409)
141 KOG1552 Predicted alpha/beta h 91.5 0.24 5.2E-06 38.8 3.6 39 54-92 111-150 (258)
142 COG3150 Predicted esterase [Ge 91.5 0.45 9.7E-06 35.3 4.7 37 57-93 44-80 (191)
143 PRK07868 acyl-CoA synthetase; 91.0 0.77 1.7E-05 42.4 6.9 21 72-92 141-161 (994)
144 KOG3101 Esterase D [General fu 90.9 0.095 2.1E-06 40.3 0.8 22 71-92 140-161 (283)
145 PF06821 Ser_hydrolase: Serine 90.9 0.69 1.5E-05 33.9 5.4 20 71-91 54-73 (171)
146 PF08840 BAAT_C: BAAT / Acyl-C 90.8 0.86 1.9E-05 34.4 5.9 22 72-93 22-43 (213)
147 PRK10439 enterobactin/ferric e 90.5 0.73 1.6E-05 38.5 5.8 40 53-92 268-308 (411)
148 PF01738 DLH: Dienelactone hyd 90.3 0.6 1.3E-05 34.8 4.7 36 56-91 80-117 (218)
149 COG5023 Tubulin [Cytoskeleton] 90.3 0.39 8.5E-06 39.7 3.8 77 42-120 100-177 (443)
150 KOG4627 Kynurenine formamidase 90.0 0.92 2E-05 34.9 5.4 38 57-94 120-158 (270)
151 COG4814 Uncharacterized protei 89.9 0.8 1.7E-05 36.1 5.1 29 58-86 122-150 (288)
152 PRK15004 alpha-ribazole phosph 89.8 0.97 2.1E-05 33.5 5.5 40 52-93 122-161 (199)
153 TIGR03162 ribazole_cobC alpha- 89.8 1.4 3.1E-05 31.7 6.2 40 52-93 118-157 (177)
154 PF00450 Peptidase_S10: Serine 89.4 2.3 5E-05 34.6 7.8 67 53-120 114-183 (415)
155 PF03583 LIP: Secretory lipase 89.4 2.1 4.6E-05 33.9 7.4 50 70-125 69-120 (290)
156 PRK13463 phosphatase PhoE; Pro 88.8 1.7 3.6E-05 32.4 6.1 40 52-93 124-163 (203)
157 PF07224 Chlorophyllase: Chlor 88.8 0.93 2E-05 36.0 4.8 23 72-94 120-142 (307)
158 KOG4372 Predicted alpha/beta h 88.5 0.33 7.1E-06 40.4 2.2 86 8-95 80-173 (405)
159 COG2819 Predicted hydrolase of 88.3 0.86 1.9E-05 35.9 4.3 33 55-88 121-153 (264)
160 PF12740 Chlorophyllase2: Chlo 88.2 0.74 1.6E-05 36.2 4.0 25 70-94 88-113 (259)
161 PRK03482 phosphoglycerate muta 87.4 1.9 4.2E-05 32.2 5.8 42 50-93 121-162 (215)
162 KOG4391 Predicted alpha/beta h 87.3 0.13 2.9E-06 39.7 -0.6 38 58-95 133-172 (300)
163 PRK14119 gpmA phosphoglyceromu 87.0 1.7 3.7E-05 33.1 5.3 43 49-93 150-194 (228)
164 PF03959 FSH1: Serine hydrolas 86.9 1.4 3.1E-05 33.0 4.8 64 74-140 104-173 (212)
165 COG1506 DAP2 Dipeptidyl aminop 86.6 0.88 1.9E-05 39.9 3.9 38 55-93 454-494 (620)
166 cd02186 alpha_tubulin The tubu 86.5 1 2.2E-05 37.9 4.1 53 43-95 102-154 (434)
167 PRK13462 acid phosphatase; Pro 86.4 2.1 4.5E-05 32.1 5.4 43 50-94 118-160 (203)
168 cd02188 gamma_tubulin Gamma-tu 86.3 1.7 3.7E-05 36.6 5.3 50 45-95 104-153 (431)
169 COG4757 Predicted alpha/beta h 86.0 0.4 8.7E-06 37.4 1.3 33 58-90 91-123 (281)
170 TIGR03848 MSMEG_4193 probable 86.0 2.3 5E-05 31.6 5.4 40 53-94 121-165 (204)
171 COG3509 LpqC Poly(3-hydroxybut 85.9 1.5 3.2E-05 35.3 4.5 35 58-92 128-164 (312)
172 cd02189 delta_tubulin The tubu 85.3 1.4 3E-05 37.3 4.3 52 44-95 98-149 (446)
173 PLN02633 palmitoyl protein thi 84.8 2.5 5.5E-05 34.1 5.4 66 43-119 67-133 (314)
174 PRK10252 entF enterobactin syn 84.7 2.4 5.2E-05 39.8 6.0 28 69-96 1130-1157(1296)
175 PF00300 His_Phos_1: Histidine 84.2 3.3 7.2E-05 28.6 5.3 37 50-88 121-158 (158)
176 cd06059 Tubulin The tubulin su 84.2 1.3 2.9E-05 36.5 3.7 56 40-95 57-112 (382)
177 PF07082 DUF1350: Protein of u 83.9 3.3 7.1E-05 32.4 5.5 90 1-93 9-111 (250)
178 KOG3847 Phospholipase A2 (plat 83.7 0.45 9.8E-06 38.7 0.7 20 72-91 241-260 (399)
179 PTZ00335 tubulin alpha chain; 83.7 1.1 2.4E-05 37.9 3.1 54 42-95 102-155 (448)
180 COG0412 Dienelactone hydrolase 83.2 3.2 7E-05 31.9 5.3 39 55-93 93-133 (236)
181 cd02190 epsilon_tubulin The tu 82.8 1.5 3.3E-05 36.2 3.5 52 44-95 71-122 (379)
182 cd00286 Tubulin_FtsZ Tubulin/F 82.3 3.1 6.8E-05 33.4 5.1 50 44-93 61-110 (328)
183 PF11144 DUF2920: Protein of u 82.3 3.3 7.1E-05 34.6 5.2 22 72-93 184-205 (403)
184 PLN00220 tubulin beta chain; P 82.2 1.1 2.4E-05 37.8 2.6 52 44-95 102-153 (447)
185 COG0400 Predicted esterase [Ge 82.2 3.3 7.2E-05 31.4 4.9 37 57-93 82-120 (207)
186 KOG2029 Uncharacterized conser 82.1 14 0.0003 32.7 9.0 50 71-120 525-575 (697)
187 PF12715 Abhydrolase_7: Abhydr 81.9 4.3 9.4E-05 33.8 5.8 22 71-92 225-246 (390)
188 PLN02209 serine carboxypeptida 81.9 5.2 0.00011 33.8 6.4 62 56-118 148-212 (437)
189 PLN00222 tubulin gamma chain; 81.6 2.9 6.4E-05 35.4 4.9 51 44-95 105-155 (454)
190 PTZ00123 phosphoglycerate muta 81.3 5.8 0.00013 30.4 6.1 42 51-94 139-182 (236)
191 PF06342 DUF1057: Alpha/beta h 81.1 2.8 6.2E-05 33.5 4.3 34 60-93 91-125 (297)
192 cd02187 beta_tubulin The tubul 80.8 1.9 4.2E-05 36.2 3.5 51 45-95 102-152 (425)
193 PF06057 VirJ: Bacterial virul 80.6 4.6 0.0001 30.4 5.1 39 56-94 52-90 (192)
194 PF03283 PAE: Pectinacetyleste 80.4 6.6 0.00014 32.3 6.4 47 42-96 132-180 (361)
195 PF08538 DUF1749: Protein of u 80.4 2.1 4.7E-05 34.4 3.4 60 56-122 88-151 (303)
196 cd00312 Esterase_lipase Estera 80.1 4.2 9.1E-05 34.2 5.3 22 71-92 175-196 (493)
197 PF02089 Palm_thioest: Palmito 79.2 13 0.00029 29.6 7.5 37 73-119 81-118 (279)
198 PRK07238 bifunctional RNase H/ 79.1 7.2 0.00016 31.9 6.2 41 51-93 292-332 (372)
199 PTZ00387 epsilon tubulin; Prov 78.9 2.1 4.5E-05 36.5 3.1 54 42-95 101-154 (465)
200 PLN02213 sinapoylglucose-malat 78.6 12 0.00025 30.1 7.2 62 56-118 32-96 (319)
201 cd07067 HP_PGM_like Histidine 78.6 6.7 0.00014 27.2 5.2 58 57-116 85-144 (153)
202 KOG1516 Carboxylesterase and r 78.6 3.6 7.9E-05 35.1 4.5 21 71-91 194-214 (545)
203 COG3243 PhaC Poly(3-hydroxyalk 78.1 6.3 0.00014 33.3 5.6 41 56-96 165-205 (445)
204 KOG2112 Lysophospholipase [Lip 78.1 5.5 0.00012 30.3 4.8 37 58-94 78-115 (206)
205 PLN03016 sinapoylglucose-malat 78.1 5.8 0.00013 33.4 5.5 62 56-118 146-210 (433)
206 PRK14118 gpmA phosphoglyceromu 77.5 9 0.00019 29.1 6.0 40 52-93 152-193 (227)
207 COG0627 Predicted esterase [Ge 76.9 2.8 6.1E-05 33.9 3.2 21 73-93 153-173 (316)
208 PRK14116 gpmA phosphoglyceromu 76.7 7.1 0.00015 29.7 5.3 41 51-93 152-194 (228)
209 KOG1515 Arylacetamide deacetyl 76.7 7.1 0.00015 31.9 5.5 25 72-96 166-190 (336)
210 PTZ00010 tubulin beta chain; P 76.6 3.4 7.5E-05 34.9 3.8 52 44-95 102-153 (445)
211 COG0406 phoE Broad specificity 76.5 9.7 0.00021 28.1 5.9 42 50-93 124-165 (208)
212 PF10340 DUF2424: Protein of u 76.0 7.7 0.00017 32.2 5.5 40 57-96 180-219 (374)
213 PLN00221 tubulin alpha chain; 75.3 3 6.5E-05 35.3 3.1 53 43-95 103-155 (450)
214 PRK14115 gpmA phosphoglyceromu 75.2 11 0.00025 29.1 6.1 42 51-94 151-194 (247)
215 PLN02606 palmitoyl-protein thi 74.7 8.7 0.00019 31.0 5.4 57 54-120 76-135 (306)
216 PF01713 Smr: Smr domain; Int 74.4 19 0.0004 22.7 6.8 58 57-120 14-74 (83)
217 PRK10802 peptidoglycan-associa 74.4 20 0.00044 26.3 7.0 53 59-116 88-151 (173)
218 PF00135 COesterase: Carboxyle 74.1 5.7 0.00012 33.3 4.5 36 72-115 208-243 (535)
219 PRK01112 phosphoglyceromutase; 74.0 12 0.00027 28.5 5.9 40 53-94 153-194 (228)
220 KOG3975 Uncharacterized conser 73.4 5.7 0.00012 31.5 3.9 16 70-85 108-123 (301)
221 TIGR02802 Pal_lipo peptidoglyc 73.2 23 0.0005 23.1 6.9 51 62-117 22-83 (104)
222 TIGR01258 pgm_1 phosphoglycera 73.1 10 0.00022 29.3 5.4 41 51-93 151-193 (245)
223 PF09994 DUF2235: Uncharacteri 72.8 11 0.00023 29.8 5.5 40 56-95 75-115 (277)
224 KOG3734 Predicted phosphoglyce 72.7 9.5 0.00021 30.3 5.1 40 51-92 174-213 (272)
225 smart00864 Tubulin Tubulin/Fts 72.5 3.6 7.9E-05 30.5 2.6 53 41-96 50-107 (192)
226 PRK01295 phosphoglyceromutase; 71.5 11 0.00025 28.1 5.2 38 54-93 131-170 (206)
227 PRK14120 gpmA phosphoglyceromu 71.5 12 0.00025 29.1 5.3 40 52-93 154-195 (249)
228 PRK14117 gpmA phosphoglyceromu 70.4 13 0.00029 28.3 5.4 42 50-93 151-194 (230)
229 KOG1282 Serine carboxypeptidas 68.9 16 0.00034 31.2 5.9 64 55-119 148-214 (454)
230 PF12048 DUF3530: Protein of u 67.8 18 0.00038 29.1 5.8 34 55-89 177-210 (310)
231 KOG4178 Soluble epoxide hydrol 66.8 21 0.00046 29.0 6.0 39 58-96 99-137 (322)
232 cd07040 HP Histidine phosphata 66.0 18 0.00038 24.7 5.0 37 57-95 83-121 (153)
233 COG4188 Predicted dienelactone 65.3 4 8.7E-05 33.7 1.6 20 71-90 158-177 (365)
234 COG3673 Uncharacterized conser 64.6 34 0.00074 28.2 6.7 39 57-95 106-145 (423)
235 KOG2624 Triglyceride lipase-ch 63.6 6.4 0.00014 33.0 2.6 53 58-118 147-199 (403)
236 PF14253 AbiH: Bacteriophage a 61.8 4.4 9.6E-05 31.2 1.3 16 71-86 234-249 (270)
237 COG2382 Fes Enterochelin ester 61.6 11 0.00023 30.4 3.4 40 54-93 158-198 (299)
238 PF12242 Eno-Rase_NADH_b: NAD( 60.8 34 0.00075 21.9 5.0 23 71-93 39-61 (78)
239 KOG1553 Predicted alpha/beta h 60.0 14 0.0003 30.8 3.9 82 7-91 242-330 (517)
240 COG2885 OmpA Outer membrane pr 59.9 66 0.0014 23.5 7.4 59 58-121 101-172 (190)
241 KOG4667 Predicted esterase [Li 57.6 8.5 0.00019 29.9 2.1 21 75-95 108-128 (269)
242 PF10081 Abhydrolase_9: Alpha/ 57.2 31 0.00067 27.7 5.3 39 50-89 88-126 (289)
243 TIGR01849 PHB_depoly_PhaZ poly 55.6 53 0.0012 27.6 6.7 23 74-96 170-192 (406)
244 PF05577 Peptidase_S28: Serine 54.6 68 0.0015 26.6 7.3 33 57-89 95-130 (434)
245 KOG2541 Palmitoyl protein thio 54.1 44 0.00096 26.7 5.6 66 43-119 65-130 (296)
246 KOG2308 Phosphatidic acid-pref 50.1 19 0.00042 32.5 3.4 18 67-84 410-429 (741)
247 cd02202 FtsZ_type2 FtsZ is a G 49.7 27 0.00058 28.6 4.0 46 50-95 74-121 (349)
248 PF13173 AAA_14: AAA domain 48.2 22 0.00049 24.1 2.9 27 58-84 76-102 (128)
249 KOG1578 Predicted carbonic anh 47.9 11 0.00023 30.0 1.3 35 59-93 141-175 (276)
250 PRK15416 lipopolysaccharide co 47.2 22 0.00048 26.9 2.9 33 58-92 138-170 (201)
251 PRK05371 x-prolyl-dipeptidyl a 47.2 39 0.00084 30.8 4.9 23 70-92 336-358 (767)
252 PRK08384 thiamine biosynthesis 46.6 26 0.00057 29.1 3.5 30 58-88 272-301 (381)
253 cd01714 ETF_beta The electron 46.2 36 0.00079 25.4 4.0 35 59-94 97-135 (202)
254 KOG2551 Phospholipase/carboxyh 45.7 31 0.00068 26.7 3.6 35 56-91 89-123 (230)
255 COG2884 FtsE Predicted ATPase 44.4 19 0.00041 27.5 2.2 27 70-97 27-53 (223)
256 PF02983 Pro_Al_protease: Alph 44.3 19 0.0004 21.8 1.8 23 1-23 28-50 (62)
257 smart00827 PKS_AT Acyl transfe 44.3 33 0.00072 26.6 3.7 17 74-90 84-100 (298)
258 COG0331 FabD (acyl-carrier-pro 44.2 43 0.00093 27.0 4.4 18 70-87 83-100 (310)
259 COG4099 Predicted peptidase [G 43.6 48 0.001 27.2 4.4 30 58-87 252-284 (387)
260 PTZ00122 phosphoglycerate muta 42.5 82 0.0018 25.1 5.7 38 55-94 213-253 (299)
261 PF09949 DUF2183: Uncharacteri 42.4 36 0.00078 22.7 3.1 28 57-84 50-77 (100)
262 PRK07734 motB flagellar motor 41.7 1.7E+02 0.0036 22.8 7.7 52 61-116 163-229 (259)
263 COG3581 Uncharacterized protei 41.6 34 0.00075 28.7 3.4 42 70-115 71-112 (420)
264 cd07209 Pat_hypo_Ecoli_Z1214_l 41.1 68 0.0015 24.0 4.8 20 74-93 28-47 (215)
265 PF10686 DUF2493: Protein of u 40.9 88 0.0019 19.4 5.9 45 57-114 19-64 (71)
266 cd07185 OmpA_C-like Peptidogly 40.7 55 0.0012 20.9 3.9 53 62-119 24-87 (106)
267 PF06500 DUF1100: Alpha/beta h 40.4 92 0.002 26.3 5.8 36 71-116 260-295 (411)
268 TIGR00065 ftsZ cell division p 39.4 71 0.0015 26.2 5.0 43 50-95 83-125 (349)
269 TIGR03131 malonate_mdcH malona 39.0 45 0.00098 26.0 3.7 18 73-90 77-94 (295)
270 TIGR03350 type_VI_ompA type VI 38.6 1.3E+02 0.0028 20.7 7.0 49 62-116 52-115 (137)
271 PF02882 THF_DHG_CYH_C: Tetrah 38.2 59 0.0013 23.6 3.9 34 58-91 23-58 (160)
272 PF02495 7kD_coat: 7kD viral c 38.2 21 0.00046 21.3 1.3 14 68-81 23-36 (59)
273 PF00698 Acyl_transf_1: Acyl t 38.0 28 0.0006 27.6 2.4 18 72-89 84-101 (318)
274 smart00855 PGAM Phosphoglycera 36.1 82 0.0018 21.8 4.4 28 52-79 119-148 (155)
275 COG3887 Predicted signaling pr 35.8 76 0.0016 28.2 4.7 36 58-95 326-367 (655)
276 cd02201 FtsZ_type1 FtsZ is a G 35.7 79 0.0017 25.2 4.7 40 53-95 69-108 (304)
277 cd07217 Pat17_PNPLA8_PNPLA9_li 35.4 89 0.0019 25.5 5.0 17 75-91 44-60 (344)
278 cd00394 Clp_protease_like Case 35.0 95 0.0021 21.8 4.6 33 57-89 15-47 (161)
279 KOG3253 Predicted alpha/beta h 34.8 33 0.00071 30.7 2.4 47 45-91 223-269 (784)
280 cd07205 Pat_PNPLA6_PNPLA7_NTE1 34.5 1.2E+02 0.0025 21.7 5.0 19 74-92 30-48 (175)
281 KOG3967 Uncharacterized conser 34.0 1.6E+02 0.0034 23.1 5.7 44 70-122 188-236 (297)
282 PF05582 Peptidase_U57: YabG p 33.7 50 0.0011 26.4 3.1 22 58-79 142-163 (287)
283 TIGR00128 fabD malonyl CoA-acy 33.2 33 0.00073 26.4 2.1 18 73-90 84-101 (290)
284 COG0304 FabB 3-oxoacyl-(acyl-c 32.1 35 0.00076 28.7 2.1 35 59-93 314-353 (412)
285 PRK13018 cell division protein 31.7 77 0.0017 26.4 4.1 39 55-96 99-137 (378)
286 cd02191 FtsZ FtsZ is a GTPase 31.5 1.1E+02 0.0023 24.5 4.8 41 52-95 68-108 (303)
287 PF00919 UPF0004: Uncharacteri 31.3 84 0.0018 20.7 3.5 34 57-95 54-88 (98)
288 PLN02154 carbonic anhydrase 31.1 75 0.0016 25.5 3.7 32 59-90 153-184 (290)
289 PRK13320 pantothenate kinase; 30.9 85 0.0018 24.3 4.0 34 42-78 178-211 (244)
290 PF02129 Peptidase_S15: X-Pro 30.9 94 0.002 23.9 4.3 37 55-91 83-120 (272)
291 cd00884 beta_CA_cladeB Carboni 30.4 77 0.0017 23.6 3.6 32 59-90 74-105 (190)
292 cd01468 trunk_domain trunk dom 30.3 1.1E+02 0.0023 23.3 4.5 70 44-120 81-150 (239)
293 PRK13331 pantothenate kinase; 30.3 87 0.0019 24.5 4.0 45 42-94 178-222 (251)
294 TIGR02855 spore_yabG sporulati 30.1 48 0.001 26.5 2.5 36 45-80 114-163 (283)
295 PF04179 Init_tRNA_PT: Initiat 30.0 1.4E+02 0.003 25.6 5.3 42 51-92 356-402 (451)
296 PLN00416 carbonate dehydratase 30.0 78 0.0017 24.9 3.6 32 59-90 127-158 (258)
297 PRK15408 autoinducer 2-binding 29.8 2.1E+02 0.0045 23.0 6.2 51 58-118 196-246 (336)
298 PRK10510 putative outer membra 29.4 92 0.002 23.7 3.9 51 62-117 134-195 (219)
299 PLN03006 carbonate dehydratase 29.2 76 0.0016 25.6 3.5 32 59-90 159-190 (301)
300 cd07399 MPP_YvnB Bacillus subt 28.5 55 0.0012 24.5 2.5 21 59-79 137-157 (214)
301 KOG4840 Predicted hydrolases o 28.5 65 0.0014 25.3 2.9 12 73-84 108-119 (299)
302 cd07402 MPP_GpdQ Enterobacter 28.0 63 0.0014 24.1 2.8 25 59-83 170-194 (240)
303 cd07212 Pat_PNPLA9 Patatin-lik 27.9 50 0.0011 26.5 2.3 18 74-91 34-51 (312)
304 PRK14194 bifunctional 5,10-met 27.9 1E+02 0.0022 24.8 4.1 33 58-90 146-180 (301)
305 PRK04946 hypothetical protein; 27.9 2.6E+02 0.0055 20.8 6.6 53 58-120 112-164 (181)
306 cd01823 SEST_like SEST_like. A 27.6 1.5E+02 0.0032 22.4 4.8 29 51-79 126-154 (259)
307 cd00307 RuBisCO_small_like Rib 27.6 1.2E+02 0.0025 19.7 3.6 24 56-79 45-68 (84)
308 PF06100 Strep_67kDa_ant: Stre 27.6 48 0.001 28.7 2.2 33 72-111 3-35 (500)
309 KOG1210 Predicted 3-ketosphing 27.5 3.5E+02 0.0075 22.2 7.8 92 43-141 136-243 (331)
310 PF06961 DUF1294: Protein of u 27.2 66 0.0014 19.1 2.2 27 70-97 23-49 (55)
311 PF04413 Glycos_transf_N: 3-De 27.0 98 0.0021 22.8 3.6 40 41-84 24-63 (186)
312 smart00463 SMR Small MutS-rela 26.9 1.6E+02 0.0034 18.1 5.4 26 58-83 18-47 (80)
313 COG2272 PnbA Carboxylesterase 26.7 1.3E+02 0.0027 26.1 4.5 14 72-85 180-193 (491)
314 PF05705 DUF829: Eukaryotic pr 26.6 2.7E+02 0.0059 20.7 6.8 45 73-118 68-112 (240)
315 TIGR00249 sixA phosphohistidin 26.6 1.4E+02 0.0029 21.1 4.2 52 58-114 88-139 (152)
316 cd07206 Pat_TGL3-4-5_SDP1 Tria 26.2 1.6E+02 0.0035 23.7 4.9 17 75-91 100-116 (298)
317 PLN02752 [acyl-carrier protein 26.1 51 0.0011 26.5 2.1 16 75-90 127-142 (343)
318 TIGR00706 SppA_dom signal pept 26.1 1.4E+02 0.003 22.2 4.3 10 10-19 3-12 (207)
319 PF00101 RuBisCO_small: Ribulo 25.8 1.3E+02 0.0029 20.1 3.7 23 56-78 59-81 (99)
320 PF01676 Metalloenzyme: Metall 25.8 1.3E+02 0.0028 23.1 4.2 40 42-81 154-196 (252)
321 PF03853 YjeF_N: YjeF-related 25.6 2.6E+02 0.0056 20.1 7.6 51 70-128 25-75 (169)
322 COG2021 MET2 Homoserine acetyl 25.4 1.7E+02 0.0037 24.3 5.0 30 63-92 137-167 (368)
323 cd00883 beta_CA_cladeA Carboni 25.3 1.1E+02 0.0025 22.4 3.6 33 58-90 67-99 (182)
324 KOG2183 Prolylcarboxypeptidase 25.1 1.2E+02 0.0025 26.0 4.0 51 42-97 136-188 (492)
325 KOG0235 Phosphoglycerate mutas 24.9 1.5E+02 0.0033 22.7 4.3 37 53-89 136-176 (214)
326 PF02633 Creatininase: Creatin 24.9 2E+02 0.0042 21.9 5.0 32 58-91 88-119 (237)
327 PRK13318 pantothenate kinase; 24.8 1.1E+02 0.0025 23.5 3.8 34 42-78 188-222 (258)
328 PF03808 Glyco_tran_WecB: Glyc 24.8 2.7E+02 0.0058 20.0 6.6 19 106-126 102-120 (172)
329 COG2845 Uncharacterized protei 24.8 1.4E+02 0.003 24.6 4.3 26 71-96 116-141 (354)
330 PF13479 AAA_24: AAA domain 24.8 1.3E+02 0.0028 22.4 3.9 32 48-80 105-136 (213)
331 PRK13327 pantothenate kinase; 24.4 1.2E+02 0.0027 23.4 3.8 34 42-78 174-208 (242)
332 cd03527 RuBisCO_small Ribulose 24.1 1.4E+02 0.0031 19.9 3.6 24 56-79 60-83 (99)
333 PF06866 DUF1256: Protein of u 23.9 2.9E+02 0.0063 20.2 5.4 40 57-96 11-53 (163)
334 cd07225 Pat_PNPLA6_PNPLA7 Pata 23.8 76 0.0016 25.4 2.6 19 74-92 45-63 (306)
335 KOG2214 Predicted esterase of 23.8 36 0.00078 29.5 0.8 21 74-94 204-224 (543)
336 TIGR03712 acc_sec_asp2 accesso 23.6 43 0.00094 28.9 1.3 48 47-94 330-379 (511)
337 PRK11148 cyclic 3',5'-adenosin 23.6 80 0.0017 24.4 2.7 24 60-83 184-207 (275)
338 PRK09330 cell division protein 23.6 1.7E+02 0.0036 24.5 4.7 43 50-95 79-121 (384)
339 PF11339 DUF3141: Protein of u 23.4 1.8E+02 0.0039 25.6 4.9 40 54-93 121-161 (581)
340 PRK13938 phosphoheptose isomer 23.4 2.6E+02 0.0056 20.8 5.3 25 70-94 44-68 (196)
341 PLN03019 carbonic anhydrase 23.3 1.1E+02 0.0024 25.1 3.4 32 59-90 202-233 (330)
342 cd07214 Pat17_isozyme_like Pat 23.3 1.6E+02 0.0035 23.9 4.5 17 75-91 46-62 (349)
343 PRK12829 short chain dehydroge 23.2 1.2E+02 0.0026 22.5 3.6 26 68-95 8-33 (264)
344 COG2840 Uncharacterized protei 23.0 2.1E+02 0.0046 21.4 4.7 39 58-96 113-155 (184)
345 KOG1551 Uncharacterized conser 22.9 45 0.00097 26.9 1.1 21 72-92 195-215 (371)
346 PRK08944 motB flagellar motor 22.9 4E+02 0.0087 21.4 7.5 55 61-120 200-271 (302)
347 PRK10279 hypothetical protein; 22.4 89 0.0019 25.0 2.8 19 74-92 35-53 (300)
348 cd01479 Sec24-like Sec24-like: 22.3 2.2E+02 0.0048 21.8 4.9 68 44-122 82-149 (244)
349 PRK10115 protease 2; Provision 22.3 1.6E+02 0.0035 26.3 4.7 36 55-90 505-542 (686)
350 KOG1374 Gamma tubulin [Cytoske 22.1 62 0.0013 27.2 1.8 67 45-114 106-172 (448)
351 cd00382 beta_CA Carbonic anhyd 22.0 1.4E+02 0.0031 20.2 3.4 30 58-87 45-74 (119)
352 cd01833 XynB_like SGNH_hydrola 21.6 2.1E+02 0.0045 19.5 4.3 26 53-78 61-86 (157)
353 PF02568 ThiI: Thiamine biosyn 21.5 1.2E+02 0.0026 22.8 3.2 23 64-87 102-124 (197)
354 TIGR00671 baf pantothenate kin 21.3 1.6E+02 0.0034 22.8 3.9 35 42-79 180-215 (243)
355 PRK14192 bifunctional 5,10-met 21.1 1.6E+02 0.0035 23.3 4.0 23 68-90 156-180 (283)
356 PRK04148 hypothetical protein; 21.0 1.9E+02 0.004 20.4 3.9 32 60-91 6-37 (134)
357 KOG1202 Animal-type fatty acid 21.0 2.9E+02 0.0063 27.5 6.0 36 61-96 2171-2206(2376)
358 PF00378 ECH: Enoyl-CoA hydrat 20.8 2.6E+02 0.0055 21.1 5.0 21 75-95 96-116 (245)
359 PF03850 Tfb4: Transcription f 20.8 4.3E+02 0.0093 20.9 8.1 87 3-95 41-132 (276)
360 COG4819 EutA Ethanolamine util 20.8 1.4E+02 0.0031 24.9 3.6 37 55-93 394-430 (473)
361 cd01985 ETF The electron trans 20.7 1.7E+02 0.0037 21.0 3.8 34 60-94 81-115 (181)
362 PRK06142 enoyl-CoA hydratase; 20.7 2.6E+02 0.0057 21.6 5.1 22 74-95 114-135 (272)
363 PRK14191 bifunctional 5,10-met 20.7 1.6E+02 0.0035 23.5 3.9 69 58-126 144-221 (285)
364 KOG3463 Transcription initiati 20.6 2.4E+02 0.0051 19.2 4.1 29 51-79 34-62 (109)
365 cd07207 Pat_ExoU_VipD_like Exo 20.6 1.5E+02 0.0032 21.3 3.5 19 74-92 29-47 (194)
366 cd07232 Pat_PLPL Patain-like p 20.6 2.2E+02 0.0048 23.9 4.9 17 75-91 98-114 (407)
367 PLN03014 carbonic anhydrase 20.6 1E+02 0.0023 25.4 2.8 33 58-90 206-238 (347)
368 PRK13326 pantothenate kinase; 20.4 1.6E+02 0.0035 23.1 3.8 44 42-93 190-234 (262)
369 cd04506 SGNH_hydrolase_YpmR_li 20.3 2.8E+02 0.0061 19.8 5.0 25 55-79 105-129 (204)
370 COG3946 VirJ Type IV secretory 20.2 1.5E+02 0.0033 25.2 3.7 34 59-92 313-346 (456)
371 cd07210 Pat_hypo_W_succinogene 20.2 2.8E+02 0.006 20.9 5.0 17 75-91 31-47 (221)
No 1
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=100.00 E-value=1.3e-34 Score=221.23 Aligned_cols=136 Identities=20% Similarity=0.247 Sum_probs=118.7
Q ss_pred cccCCCCeEEEEEcCCCCCCccchhhcccCCCCC---c--cCCCceeeHhHHHHHHHHHHHHHHHHHHHHhhCCCceEEE
Q 038038 2 VVLQKKTDIVLAIRGLNLAKEGGYAVLLDNKLGQ---T--KLDGGYVHNGSLKAARWVFNAECEFLRGLVDRNPNYTLTF 76 (150)
Q Consensus 2 ~~d~~~~~ivva~RGT~~~~d~~~~~~~d~~~~~---~--~~~~~~vH~Gf~~~~~~~~~~~~~~l~~~~~~~~~~~i~i 76 (150)
++|++++.++|+||||.+..||.. |..... . ...++++|+||++++..+++++.+.++++++++|+++|++
T Consensus 57 ~~~~~~~~ivva~RGT~~~~d~~~----d~~~~~~~~~~~~~~~~~vh~Gf~~~~~~~~~~~~~~~~~~~~~~p~~~i~v 132 (229)
T cd00519 57 AVDHDRKTIVIAFRGTVSLADWLT----DLDFSPVPLDPPLCSGGKVHSGFYSAYKSLYNQVLPELKSALKQYPDYKIIV 132 (229)
T ss_pred EEECCCCeEEEEEeCCCchHHHHH----hcccccccCCCCCCCCcEEcHHHHHHHHHHHHHHHHHHHHHHhhCCCceEEE
Confidence 578889999999999999888754 433321 1 2567899999999999999999999999999999999999
Q ss_pred eeechhHHHHHHHHHHHHhcccccCCCCCCceEEEEecCCCCCCHHHHH---hcCCceeEEEeCCccccccCCC
Q 038038 77 AGHSLGAGVVALLVLIVVQNLDKLGNIERNKIRCFAIAPTKCMSLNLAV---RYEWIVNGCERKGKTEEKEKAM 147 (150)
Q Consensus 77 tGHSLGGalA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~P~v~~~~~a~---~~~~~i~~iv~~~D~VP~~~~~ 147 (150)
||||||||+|+++++++.... +..++++||||+||+|+.+++. .....++||+|++|+||++|..
T Consensus 133 tGHSLGGaiA~l~a~~l~~~~------~~~~i~~~tFg~P~vg~~~~a~~~~~~~~~~~rvv~~~D~Vp~lp~~ 200 (229)
T cd00519 133 TGHSLGGALASLLALDLRLRG------PGSDVTVYTFGQPRVGNAAFAEYLESTKGRVYRVVHGNDIVPRLPPG 200 (229)
T ss_pred EccCHHHHHHHHHHHHHHhhC------CCCceEEEEeCCCCCCCHHHHHHhhccCCCEEEEEECCCcccccCcc
Confidence 999999999999999987642 2468999999999999999998 5668899999999999999975
No 2
>PLN02847 triacylglycerol lipase
Probab=100.00 E-value=3.2e-34 Score=240.30 Aligned_cols=140 Identities=26% Similarity=0.385 Sum_probs=118.5
Q ss_pred cccCCCCeEEEEEcCCCCCCccchhhcccC-CCC--------CccCCCceeeHhHHHHHHHHHHHHHHHHHHHHhhCCCc
Q 038038 2 VVLQKKTDIVLAIRGLNLAKEGGYAVLLDN-KLG--------QTKLDGGYVHNGSLKAARWVFNAECEFLRGLVDRNPNY 72 (150)
Q Consensus 2 ~~d~~~~~ivva~RGT~~~~d~~~~~~~d~-~~~--------~~~~~~~~vH~Gf~~~~~~~~~~~~~~l~~~~~~~~~~ 72 (150)
++|++++.|||+||||.+..||..|..... .+. .....++++|+||+.+++++.+.+.+.|.++++++|+|
T Consensus 172 avDh~~K~IVVsIRGT~Si~D~LTDL~~~~vPf~~s~l~~gG~~n~~~G~AH~Gml~AArwI~~~i~~~L~kal~~~PdY 251 (633)
T PLN02847 172 IRDENSKCFLLLIRGTHSIKDTLTAATGAVVPFHHSVLHDGGVSNLVLGYAHCGMVAAARWIAKLSTPCLLKALDEYPDF 251 (633)
T ss_pred EEeCCCCEEEEEECCCCCHHHHHHhcccccccCCcccccccCcccCcCCccCccHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 689999999999999999999865522111 000 01112468999999999999999999999999999999
Q ss_pred eEEEeeechhHHHHHHHHHHHHhcccccCCCCCCceEEEEecCCCCCCHHHHHhcCCceeEEEeCCccccccCCC
Q 038038 73 TLTFAGHSLGAGVVALLVLIVVQNLDKLGNIERNKIRCFAIAPTKCMSLNLAVRYEWIVNGCERKGKTEEKEKAM 147 (150)
Q Consensus 73 ~i~itGHSLGGalA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~P~v~~~~~a~~~~~~i~~iv~~~D~VP~~~~~ 147 (150)
+|+|||||||||+|+|++++++..+ +..+++||+||||+|.+.+++...++++++|||++|+|||++..
T Consensus 252 kLVITGHSLGGGVAALLAilLRe~~------~fssi~CyAFgPp~cvS~eLAe~~k~fVTSVVng~DIVPRLS~~ 320 (633)
T PLN02847 252 KIKIVGHSLGGGTAALLTYILREQK------EFSSTTCVTFAPAACMTWDLAESGKHFITTIINGSDLVPTFSAA 320 (633)
T ss_pred eEEEeccChHHHHHHHHHHHHhcCC------CCCCceEEEecCchhcCHHHHHHhhhheEEEEeCCCCCccCCHH
Confidence 9999999999999999999997642 23688999999999999999999999999999999999999853
No 3
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=100.00 E-value=4.2e-34 Score=202.43 Aligned_cols=128 Identities=23% Similarity=0.376 Sum_probs=105.3
Q ss_pred EEEEcCCCCCCccchhhcccCCCCCcc-----CCCceeeHhHHHHHH-HHHHHHHHHHHHHHhhCCCceEEEeeechhHH
Q 038038 11 VLAIRGLNLAKEGGYAVLLDNKLGQTK-----LDGGYVHNGSLKAAR-WVFNAECEFLRGLVDRNPNYTLTFAGHSLGAG 84 (150)
Q Consensus 11 vva~RGT~~~~d~~~~~~~d~~~~~~~-----~~~~~vH~Gf~~~~~-~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGa 84 (150)
||+||||.+..||..| ....... ..++.+|+||++++. ...+++.+.|+++.+++++++|++||||||||
T Consensus 1 vva~RGT~s~~d~~~d----~~~~~~~~~~~~~~~~~vh~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGa 76 (140)
T PF01764_consen 1 VVAFRGTNSPSDWLTD----LDAWPVSWSSFLLDGGRVHSGFLDAAEDSLYDQILDALKELVEKYPDYSIVITGHSLGGA 76 (140)
T ss_dssp EEEEEESSSHHHHHHH----THHCEEECTTSTTCTHEEEHHHHHHHHCHHHHHHHHHHHHHHHHSTTSEEEEEEETHHHH
T ss_pred eEEEECCCCHHHHHHh----cccCceeccccccCceEEehhHHHHHHHHHHHHHHHHHHHHHhcccCccchhhccchHHH
Confidence 7999999998887543 3222111 127899999999999 98999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccCCCCCCceEEEEecCCCCCCHHHHHhcC----CceeEEEeCCccccccCC
Q 038038 85 VVALLVLIVVQNLDKLGNIERNKIRCFAIAPTKCMSLNLAVRYE----WIVNGCERKGKTEEKEKA 146 (150)
Q Consensus 85 lA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~P~v~~~~~a~~~~----~~i~~iv~~~D~VP~~~~ 146 (150)
+|+++++++.+.... +..+++||+||+|++++++++..++ ..+++|+|++|+|||+|.
T Consensus 77 lA~l~a~~l~~~~~~----~~~~~~~~~fg~P~~~~~~~~~~~~~~~~~~~~~iv~~~D~Vp~~p~ 138 (140)
T PF01764_consen 77 LASLAAADLASHGPS----SSSNVKCYTFGAPRVGNSAFAKWYDSLFNRNIFRIVNQNDIVPRLPP 138 (140)
T ss_dssp HHHHHHHHHHHCTTT----STTTEEEEEES-S--BEHHHHHHHHHHTSCGEEEEEETTBSGGGTS-
T ss_pred HHHHHHHhhhhcccc----cccceeeeecCCccccCHHHHHHHHhhCCCeEEEEEECCCEeeecCC
Confidence 999999999876321 1478999999999999999998776 469999999999999985
No 4
>PLN02934 triacylglycerol lipase
Probab=100.00 E-value=2.1e-32 Score=226.66 Aligned_cols=139 Identities=19% Similarity=0.178 Sum_probs=108.8
Q ss_pred cccCCC--CeEEEEEcCCCC--CCccchhhcccCCCCCccCC-CceeeHhHHHHHHH-----------------------
Q 038038 2 VVLQKK--TDIVLAIRGLNL--AKEGGYAVLLDNKLGQTKLD-GGYVHNGSLKAARW----------------------- 53 (150)
Q Consensus 2 ~~d~~~--~~ivva~RGT~~--~~d~~~~~~~d~~~~~~~~~-~~~vH~Gf~~~~~~----------------------- 53 (150)
++|+.. +.||||||||.. ..|| ++|+++.+...+ .++||.||++|+..
T Consensus 213 ~~Dk~~d~~~IVVAFRGT~p~s~~dW----iTDldfs~~~~p~~gkVH~GF~~A~~l~~~~~~~tf~~~l~~~~~~~~~~ 288 (515)
T PLN02934 213 FCDKPKDANLIVISFRGTEPFDADDW----GTDFDYSWYEIPKVGKVHMGFLEAMGLGNRDDTTTFQTSLQTKATSELKE 288 (515)
T ss_pred EEccccCCceEEEEECCCCcCCHHHH----hhccCccccCCCCCCeecHHHHHHHhhhccccccchhhhhhhcccccccc
Confidence 356644 999999999984 5565 677777655443 47999999998852
Q ss_pred --------------HHHHHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHHHhcccccCCCCCCceEEEEecCCCCC
Q 038038 54 --------------VFNAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIVVQNLDKLGNIERNKIRCFAIAPTKCM 119 (150)
Q Consensus 54 --------------~~~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~P~v~ 119 (150)
.+.++.+.++++++++|+++|++||||||||+|+|++..+....+ .+ .....+.|||||+||+|
T Consensus 289 ~~~~~~~~~~~~~~Ay~~v~~~lk~ll~~~p~~kIvVTGHSLGGALAtLaA~~L~l~~~-~~-~l~~~~~vYTFGsPRVG 366 (515)
T PLN02934 289 EESKKNLLEMVERSAYYAVRSKLKSLLKEHKNAKFVVTGHSLGGALAILFPTVLVLQEE-TE-VMKRLLGVYTFGQPRIG 366 (515)
T ss_pred ccccccccccchhhHHHHHHHHHHHHHHHCCCCeEEEeccccHHHHHHHHHHHHHHhcc-cc-cccCceEEEEeCCCCcc
Confidence 123478889999999999999999999999999999988764321 11 11235789999999999
Q ss_pred CHHHHHhcCC-------ceeEEEeCCccccccCC
Q 038038 120 SLNLAVRYEW-------IVNGCERKGKTEEKEKA 146 (150)
Q Consensus 120 ~~~~a~~~~~-------~i~~iv~~~D~VP~~~~ 146 (150)
|.+|++.++. ..+||||.+|+|||+|.
T Consensus 367 N~~FA~~~~~~~~~~~~~~~RVVn~~DiVPrLP~ 400 (515)
T PLN02934 367 NRQLGKFMEAQLNYPVPRYFRVVYCNDLVPRLPY 400 (515)
T ss_pred CHHHHHHHHHhhcCCCccEEEEEECCCcccccCC
Confidence 9999987542 36899999999999995
No 5
>PLN02310 triacylglycerol lipase
Probab=100.00 E-value=2.1e-32 Score=222.70 Aligned_cols=130 Identities=18% Similarity=0.137 Sum_probs=106.5
Q ss_pred CeEEEEEcCCCCCCccchhhcccCCCCC--ccCCCceeeHhHHHHHHH-----------HHHHHHHHHHHHHhhC----C
Q 038038 8 TDIVLAIRGLNLAKEGGYAVLLDNKLGQ--TKLDGGYVHNGSLKAARW-----------VFNAECEFLRGLVDRN----P 70 (150)
Q Consensus 8 ~~ivva~RGT~~~~d~~~~~~~d~~~~~--~~~~~~~vH~Gf~~~~~~-----------~~~~~~~~l~~~~~~~----~ 70 (150)
+.|||+||||.+..||.. |++... ....+++||+||++++.. ..+++.+.|+++++.| +
T Consensus 132 rdIVVAfRGT~s~~dWi~----Dl~~~l~~~~~~~~kVH~GF~~~Y~s~~~~~~~~~~sa~~qVl~eV~~L~~~y~~~~e 207 (405)
T PLN02310 132 RDIMVAWRGTVAPSEWFL----DLETKLEHIDNTNVKVQEGFLKIYKSKDESTRYNKLSASEQVMQEVKRLVNFYRGKGE 207 (405)
T ss_pred ceEEEEECCCCCHHHHHH----hcccceecCCCCCCEeeHhHHHHHhCcCcccccccchHHHHHHHHHHHHHHhhcccCC
Confidence 599999999999888854 444332 223567999999999875 5667888888888766 4
Q ss_pred CceEEEeeechhHHHHHHHHHHHHhcccccCCCCCCceEEEEecCCCCCCHHHHHhcC---CceeEEEeCCccccccCCC
Q 038038 71 NYTLTFAGHSLGAGVVALLVLIVVQNLDKLGNIERNKIRCFAIAPTKCMSLNLAVRYE---WIVNGCERKGKTEEKEKAM 147 (150)
Q Consensus 71 ~~~i~itGHSLGGalA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~P~v~~~~~a~~~~---~~i~~iv~~~D~VP~~~~~ 147 (150)
+++|+|||||||||||+|+|+++.... +...+.+||||+|||||.+|++.++ ..+.||+|..|+||++|+.
T Consensus 208 ~~sI~vTGHSLGGALAtLaA~dl~~~~------~~~~v~vyTFGsPRVGN~~Fa~~~~~~~~~~~RVvn~~DiVP~lPp~ 281 (405)
T PLN02310 208 EVSLTVTGHSLGGALALLNAYEAATTI------PDLFVSVISFGAPRVGNIAFKEKLNELGVKTLRVVVKQDKVPKLPGL 281 (405)
T ss_pred cceEEEEcccHHHHHHHHHHHHHHHhC------cCcceeEEEecCCCcccHHHHHHHHhcCCCEEEEEECCCccCccCcc
Confidence 679999999999999999999987541 2346899999999999999999876 3578999999999999974
No 6
>PLN02454 triacylglycerol lipase
Probab=99.98 E-value=6.1e-32 Score=220.36 Aligned_cols=140 Identities=16% Similarity=0.116 Sum_probs=111.5
Q ss_pred CCeEEEEEcCCCCCCccchhhcc---cCCC--C----------------CccCCCceeeHhHHHHHH-----------HH
Q 038038 7 KTDIVLAIRGLNLAKEGGYAVLL---DNKL--G----------------QTKLDGGYVHNGSLKAAR-----------WV 54 (150)
Q Consensus 7 ~~~ivva~RGT~~~~d~~~~~~~---d~~~--~----------------~~~~~~~~vH~Gf~~~~~-----------~~ 54 (150)
++.|||+||||.+..||..|+.. +... . ...+.+++||+||++++. .+
T Consensus 129 rrdIvVafRGT~t~~eWi~Dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kVH~GF~~~Yts~~~~~~f~~~S~ 208 (414)
T PLN02454 129 RREIYVAWRGTTRNYEWVDVLGAKLTSADPLLPGPEQDGVVSGSSSDSDDDDEKGPKVMLGWLTIYTSDDPRSPFTKLSA 208 (414)
T ss_pred cceEEEEECCCCcHHHHHHhccccccccccccCccccccccccccccccCCCCCCcEEeHhHHHHhhccCccccchhHHH
Confidence 45999999999999999765221 1110 0 013457899999999986 67
Q ss_pred HHHHHHHHHHHHhhCCCce--EEEeeechhHHHHHHHHHHHHhcccccCCCCCCceEEEEecCCCCCCHHHHHhcCC---
Q 038038 55 FNAECEFLRGLVDRNPNYT--LTFAGHSLGAGVVALLVLIVVQNLDKLGNIERNKIRCFAIAPTKCMSLNLAVRYEW--- 129 (150)
Q Consensus 55 ~~~~~~~l~~~~~~~~~~~--i~itGHSLGGalA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~P~v~~~~~a~~~~~--- 129 (150)
.+++.+.|++++++||+++ |++||||||||||+|+|..+.... .. .+...+++||||+||+||.+|++.++.
T Consensus 209 r~qvl~~V~~l~~~Yp~~~~sI~vTGHSLGGALAtLaA~di~~~g--~~-~~~~~V~~~TFGsPRVGN~~Fa~~~~~~~~ 285 (414)
T PLN02454 209 RSQLLAKIKELLERYKDEKLSIVLTGHSLGASLATLAAFDIVENG--VS-GADIPVTAIVFGSPQVGNKEFNDRFKEHPN 285 (414)
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEEecCHHHHHHHHHHHHHHHhc--cc-ccCCceEEEEeCCCcccCHHHHHHHHhCCC
Confidence 8889999999999998765 999999999999999999997641 10 123468999999999999999998753
Q ss_pred -ceeEEEeCCccccccCCCcC
Q 038038 130 -IVNGCERKGKTEEKEKAMVL 149 (150)
Q Consensus 130 -~i~~iv~~~D~VP~~~~~~~ 149 (150)
.++||+|..|+||++|+..+
T Consensus 286 ~rvlrVvN~~DiVP~lPp~~~ 306 (414)
T PLN02454 286 LKILHVRNTIDLIPHYPGGLL 306 (414)
T ss_pred ceEEEEecCCCeeeeCCCCcC
Confidence 47899999999999998643
No 7
>PLN02408 phospholipase A1
Probab=99.98 E-value=4.3e-32 Score=218.80 Aligned_cols=137 Identities=20% Similarity=0.178 Sum_probs=108.3
Q ss_pred CeEEEEEcCCCCCCccchhhcccCC-CCC--c------cCCCceeeHhHHHHHH-------HHHHHHHHHHHHHHhhCCC
Q 038038 8 TDIVLAIRGLNLAKEGGYAVLLDNK-LGQ--T------KLDGGYVHNGSLKAAR-------WVFNAECEFLRGLVDRNPN 71 (150)
Q Consensus 8 ~~ivva~RGT~~~~d~~~~~~~d~~-~~~--~------~~~~~~vH~Gf~~~~~-------~~~~~~~~~l~~~~~~~~~ 71 (150)
+.|||+||||.+..||..|+..... +.. . ...+++||+||++++. .+.+++.+.|++++++|++
T Consensus 118 rdIVVafRGT~s~~dWi~DL~~~l~~~p~~~~~~~~~~~~~~~kVH~GFl~~Yts~~~~~~s~r~qVl~eI~~ll~~y~~ 197 (365)
T PLN02408 118 RDVVIAFRGTATCLEWLENLRATLTRLPNAPTDMNGSGDGSGPMVESGFLSLYTSGTAMGPSLQEMVREEIARLLQSYGD 197 (365)
T ss_pred ceEEEEEcCCCCHHHHHHHhhhceeecCCCCccccccCCCCCCeecHhHHHHHhcccccchhHHHHHHHHHHHHHHhcCC
Confidence 3689999999999998654222111 000 0 1125699999999986 4677889999999999886
Q ss_pred --ceEEEeeechhHHHHHHHHHHHHhcccccCCCCCCceEEEEecCCCCCCHHHHHhcC---CceeEEEeCCccccccCC
Q 038038 72 --YTLTFAGHSLGAGVVALLVLIVVQNLDKLGNIERNKIRCFAIAPTKCMSLNLAVRYE---WIVNGCERKGKTEEKEKA 146 (150)
Q Consensus 72 --~~i~itGHSLGGalA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~P~v~~~~~a~~~~---~~i~~iv~~~D~VP~~~~ 146 (150)
.+|++||||||||||+|+|+.+.... . ..+.+.+||||+||+||.+|++.++ ..++||||.+|+||++|+
T Consensus 198 ~~~sI~vTGHSLGGALAtLaA~dl~~~~---~--~~~~V~v~tFGsPRVGN~~Fa~~~~~~~~~~lRVvN~~D~VP~vP~ 272 (365)
T PLN02408 198 EPLSLTITGHSLGAALATLTAYDIKTTF---K--RAPMVTVISFGGPRVGNRSFRRQLEKQGTKVLRIVNSDDVITKVPG 272 (365)
T ss_pred CCceEEEeccchHHHHHHHHHHHHHHhc---C--CCCceEEEEcCCCCcccHHHHHHHHhcCCcEEEEEeCCCCcccCCC
Confidence 46999999999999999999998741 1 1246899999999999999999876 357899999999999998
Q ss_pred CcC
Q 038038 147 MVL 149 (150)
Q Consensus 147 ~~~ 149 (150)
+++
T Consensus 273 ~~~ 275 (365)
T PLN02408 273 FVI 275 (365)
T ss_pred ccc
Confidence 643
No 8
>PLN02162 triacylglycerol lipase
Probab=99.98 E-value=5.8e-32 Score=222.20 Aligned_cols=137 Identities=18% Similarity=0.188 Sum_probs=107.5
Q ss_pred CCCCeEEEEEcCCCCC--CccchhhcccCCCCCccC-CCceeeHhHHHHHHH-----------------HHHHHHHHHHH
Q 038038 5 QKKTDIVLAIRGLNLA--KEGGYAVLLDNKLGQTKL-DGGYVHNGSLKAARW-----------------VFNAECEFLRG 64 (150)
Q Consensus 5 ~~~~~ivva~RGT~~~--~d~~~~~~~d~~~~~~~~-~~~~vH~Gf~~~~~~-----------------~~~~~~~~l~~ 64 (150)
++.+.|||+||||++. .|| ++|+++..... .+++||.||++++.. .+.++++.+++
T Consensus 195 ~d~~~IVVAFRGT~~~~~~DW----iTDld~s~~~~~~~GkVH~GF~~A~~~~~~~~~p~~~~~~~~~~ay~~I~~~L~~ 270 (475)
T PLN02162 195 TNPDLIVVSFRGTEPFEAADW----CTDLDLSWYELKNVGKVHAGFSRALGLQKDGGWPKENISLLHQYAYYTIRQMLRD 270 (475)
T ss_pred CCCceEEEEEccCCCCcHHHH----HhhcCcceecCCCCeeeeHHHHHHHHhhhcccccccccchhhhhhHHHHHHHHHH
Confidence 4568999999999874 455 66776655433 468999999999752 23457888888
Q ss_pred HHhhCCCceEEEeeechhHHHHHHHHHHHHhcccccCCCCCCceEEEEecCCCCCCHHHHHhcCC-------ceeEEEeC
Q 038038 65 LVDRNPNYTLTFAGHSLGAGVVALLVLIVVQNLDKLGNIERNKIRCFAIAPTKCMSLNLAVRYEW-------IVNGCERK 137 (150)
Q Consensus 65 ~~~~~~~~~i~itGHSLGGalA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~P~v~~~~~a~~~~~-------~i~~iv~~ 137 (150)
+++++|+++|++||||||||+|+|++..+...... ........+||||+||+||.+|++.++. ...||||.
T Consensus 271 lL~k~p~~kliVTGHSLGGALAtLaAa~L~~~~~~--~l~~~~~~vYTFGqPRVGn~~FA~~~~~~~~~~~~~~~RvVn~ 348 (475)
T PLN02162 271 KLARNKNLKYILTGHSLGGALAALFPAILAIHGED--ELLDKLEGIYTFGQPRVGDEDFGEFMKGVVKKHGIEYERFVYN 348 (475)
T ss_pred HHHhCCCceEEEEecChHHHHHHHHHHHHHHcccc--ccccccceEEEeCCCCccCHHHHHHHHhhhhcCCCceEEEEeC
Confidence 88899999999999999999999999987654210 0112346799999999999999987653 25799999
Q ss_pred CccccccCCC
Q 038038 138 GKTEEKEKAM 147 (150)
Q Consensus 138 ~D~VP~~~~~ 147 (150)
+|+|||+|..
T Consensus 349 nDiVPrlP~~ 358 (475)
T PLN02162 349 NDVVPRVPFD 358 (475)
T ss_pred CCcccccCCC
Confidence 9999999964
No 9
>PLN02719 triacylglycerol lipase
Probab=99.97 E-value=1.9e-31 Score=221.11 Aligned_cols=142 Identities=18% Similarity=0.098 Sum_probs=108.6
Q ss_pred CeEEEEEcCCCCCCccchhhcccCCCCC---ccC--CCceeeHhHHHHHH-----------HHHHHHHHHHHHHHhhCCC
Q 038038 8 TDIVLAIRGLNLAKEGGYAVLLDNKLGQ---TKL--DGGYVHNGSLKAAR-----------WVFNAECEFLRGLVDRNPN 71 (150)
Q Consensus 8 ~~ivva~RGT~~~~d~~~~~~~d~~~~~---~~~--~~~~vH~Gf~~~~~-----------~~~~~~~~~l~~~~~~~~~ 71 (150)
+.|||+||||.+..||..|+........ ..+ .+++||+||++++. ++.+++.+.|++++++||+
T Consensus 213 RdIVVAfRGT~t~~eWi~DL~~~l~p~~~~~~~c~~~~~kVH~GFls~Yts~~~~s~~~k~SaReQVl~eV~rL~~~Ypd 292 (518)
T PLN02719 213 RDIAIAWRGTVTRLEWIADLKDFLKPVSGNGFRCPDPAVKAESGFLDLYTDKDTCCNFSKFSAREQVLTEVKRLVERYGD 292 (518)
T ss_pred ceEEEEEcCCCCchhhhhhccccceeccccccCCCCCCceeehhHHHHHhcccccccccchhHHHHHHHHHHHHHHHCCc
Confidence 4699999999999998654221111100 112 34799999999996 4678899999999998875
Q ss_pred -----ceEEEeeechhHHHHHHHHHHHHhccc-ccCCCCCCceEEEEecCCCCCCHHHHHhcC---CceeEEEeCCcccc
Q 038038 72 -----YTLTFAGHSLGAGVVALLVLIVVQNLD-KLGNIERNKIRCFAIAPTKCMSLNLAVRYE---WIVNGCERKGKTEE 142 (150)
Q Consensus 72 -----~~i~itGHSLGGalA~l~a~~~~~~~~-~~g~~~~~~i~~~tFg~P~v~~~~~a~~~~---~~i~~iv~~~D~VP 142 (150)
++|+|||||||||||+|+|+++....- .....+...|.+||||+|||||.+|++.++ ..++||||..|+||
T Consensus 293 ~~ge~~sItVTGHSLGGALAtLaA~Dl~~~gln~~~~~~~~pVtvyTFGsPRVGN~~Fa~~~~~~~~~~lRVvN~~D~VP 372 (518)
T PLN02719 293 EEGEELSITVTGHSLGGALAVLSAYDVAEMGLNRTRKGKVIPVTAFTYGGPRVGNIRFKERIEELGVKVLRVVNEHDVVA 372 (518)
T ss_pred ccCCcceEEEecCcHHHHHHHHHHHHHHHhcccccccccccceEEEEecCCCccCHHHHHHHHhcCCcEEEEEeCCCCcc
Confidence 699999999999999999999976410 000011235889999999999999999876 35789999999999
Q ss_pred ccCCCcC
Q 038038 143 KEKAMVL 149 (150)
Q Consensus 143 ~~~~~~~ 149 (150)
++|+.++
T Consensus 373 ~lP~~~~ 379 (518)
T PLN02719 373 KSPGLFL 379 (518)
T ss_pred cCCchhc
Confidence 9997653
No 10
>PLN03037 lipase class 3 family protein; Provisional
Probab=99.97 E-value=1.5e-31 Score=221.95 Aligned_cols=138 Identities=19% Similarity=0.153 Sum_probs=107.0
Q ss_pred CCeEEEEEcCCCCCCccchhhcccCCCC----CccCCCceeeHhHHHHHHH-----------HHHHHHHHHHHHHhhCC-
Q 038038 7 KTDIVLAIRGLNLAKEGGYAVLLDNKLG----QTKLDGGYVHNGSLKAARW-----------VFNAECEFLRGLVDRNP- 70 (150)
Q Consensus 7 ~~~ivva~RGT~~~~d~~~~~~~d~~~~----~~~~~~~~vH~Gf~~~~~~-----------~~~~~~~~l~~~~~~~~- 70 (150)
++.|||+||||.+..||..|+..+.... .....+++||+||++++.. ..+++.+.|.++++.|+
T Consensus 234 RRdIVVAfRGT~s~~EWl~DL~~~lvp~~~~~~~~~~~~kVH~GFlslYtS~~~~s~fnk~SareQVl~eV~rLv~~Yk~ 313 (525)
T PLN03037 234 RRDIVVAWRGTVAPTEWFMDLRTSLEPFDCDGDHGKNVVKVQSGFLSIYKSKSELTRYNKLSASEQVMEEVKRLVNFFKD 313 (525)
T ss_pred CceEEEEECCCCCHHHHHHhhhccccccccccCCCCCCceeeHhHHHHHhCcccccccccchhHHHHHHHHHHHHHhccc
Confidence 5689999999999988865432211110 0113457999999999864 34567777888887664
Q ss_pred ---CceEEEeeechhHHHHHHHHHHHHhcccccCCCCCCceEEEEecCCCCCCHHHHHhcC---CceeEEEeCCcccccc
Q 038038 71 ---NYTLTFAGHSLGAGVVALLVLIVVQNLDKLGNIERNKIRCFAIAPTKCMSLNLAVRYE---WIVNGCERKGKTEEKE 144 (150)
Q Consensus 71 ---~~~i~itGHSLGGalA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~P~v~~~~~a~~~~---~~i~~iv~~~D~VP~~ 144 (150)
+++|+|||||||||||+|+|+.+...... ...+.+||||+|||||.+|++.++ ..++||||.+|+||++
T Consensus 314 ~ge~~SItVTGHSLGGALAtLaA~DIa~~~p~-----~~~VtvyTFGsPRVGN~aFA~~~~~l~~~~lRVVN~~DiVP~l 388 (525)
T PLN03037 314 RGEEVSLTITGHSLGGALALLNAYEAARSVPA-----LSNISVISFGAPRVGNLAFKEKLNELGVKVLRVVNKQDIVPKL 388 (525)
T ss_pred cCCcceEEEeccCHHHHHHHHHHHHHHHhCCC-----CCCeeEEEecCCCccCHHHHHHHHhcCCCEEEEEECCCccccC
Confidence 57999999999999999999998765211 237999999999999999999876 3578999999999999
Q ss_pred CCCcC
Q 038038 145 KAMVL 149 (150)
Q Consensus 145 ~~~~~ 149 (150)
|+.++
T Consensus 389 Pp~~~ 393 (525)
T PLN03037 389 PGIIF 393 (525)
T ss_pred Cchhh
Confidence 98754
No 11
>PLN02802 triacylglycerol lipase
Probab=99.97 E-value=2.2e-31 Score=220.58 Aligned_cols=136 Identities=18% Similarity=0.183 Sum_probs=108.4
Q ss_pred CCeEEEEEcCCCCCCccchhhcccCC-CCC--c---cCCCceeeHhHHHHHHH-------HHHHHHHHHHHHHhhCCC--
Q 038038 7 KTDIVLAIRGLNLAKEGGYAVLLDNK-LGQ--T---KLDGGYVHNGSLKAARW-------VFNAECEFLRGLVDRNPN-- 71 (150)
Q Consensus 7 ~~~ivva~RGT~~~~d~~~~~~~d~~-~~~--~---~~~~~~vH~Gf~~~~~~-------~~~~~~~~l~~~~~~~~~-- 71 (150)
++.|||+||||.+..||..|+..... +.. . ...+++||+||+..+.. +.+++.+.|++++++|++
T Consensus 250 RRdIVVAFRGT~s~~dWi~DL~~~lvp~~~~~~~~~~~~~~kVH~GFl~~Yts~~~~~~S~reqVl~eV~~Ll~~Y~~e~ 329 (509)
T PLN02802 250 RRDIVIALRGTATCLEWAENLRAGLVPMPGDDDDAGDQEQPKVECGFLSLYKTAGAHVPSLSESVVGEVRRLMEKYKGEE 329 (509)
T ss_pred CceEEEEEcCCCCHHHHHHHhccceeecCcccccccCCCcchHHHHHHHHHHhhccccchHHHHHHHHHHHHHHhCCCCc
Confidence 57999999999999998654221110 000 0 23467999999999874 566788899999998864
Q ss_pred ceEEEeeechhHHHHHHHHHHHHhcccccCCCCCCceEEEEecCCCCCCHHHHHhcC---CceeEEEeCCccccccCCC
Q 038038 72 YTLTFAGHSLGAGVVALLVLIVVQNLDKLGNIERNKIRCFAIAPTKCMSLNLAVRYE---WIVNGCERKGKTEEKEKAM 147 (150)
Q Consensus 72 ~~i~itGHSLGGalA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~P~v~~~~~a~~~~---~~i~~iv~~~D~VP~~~~~ 147 (150)
++|+|||||||||+|+|+|.++.... .+...+.+||||+|||||.+|++.++ ..++||||..|+||++|..
T Consensus 330 ~sI~VTGHSLGGALAtLaA~dL~~~~-----~~~~pV~vyTFGsPRVGN~aFA~~~~~~~~~~~RVVN~~DiVP~lPp~ 403 (509)
T PLN02802 330 LSITVTGHSLGAALALLVADELATCV-----PAAPPVAVFSFGGPRVGNRAFADRLNARGVKVLRVVNAQDVVTRVPGI 403 (509)
T ss_pred ceEEEeccchHHHHHHHHHHHHHHhC-----CCCCceEEEEcCCCCcccHHHHHHHHhcCCcEEEEecCCCeecccCcc
Confidence 68999999999999999999997641 12236899999999999999999875 3578999999999999975
No 12
>PLN00413 triacylglycerol lipase
Probab=99.97 E-value=2.3e-31 Score=219.19 Aligned_cols=136 Identities=15% Similarity=0.235 Sum_probs=105.5
Q ss_pred CCCeEEEEEcCCC--CCCccchhhcccCCCCCccC-CCceeeHhHHHHHHH---------------------HHHHHHHH
Q 038038 6 KKTDIVLAIRGLN--LAKEGGYAVLLDNKLGQTKL-DGGYVHNGSLKAARW---------------------VFNAECEF 61 (150)
Q Consensus 6 ~~~~ivva~RGT~--~~~d~~~~~~~d~~~~~~~~-~~~~vH~Gf~~~~~~---------------------~~~~~~~~ 61 (150)
+.+.|||+||||+ +..|| ++|+++..... .+++||.||++++.. .+.++.+.
T Consensus 198 d~n~IVVAFRGT~p~s~~DW----itDldf~~~~~~~~gkVH~GF~~Al~~~k~~w~~~~~~~~~~~~~~~~ayy~i~~~ 273 (479)
T PLN00413 198 DPNLIIVSFRGTDPFDADDW----CTDLDLSWHEVKNVGKIHGGFMKALGLPKEGWPEEINLDETQNATSLLAYYTILRH 273 (479)
T ss_pred CCCeEEEEecCCCCCCHHHH----HhhccccccCCCCCceeehhHHHhhcccccccccccccccccccchhhhHHHHHHH
Confidence 3478999999998 45676 45665554333 468999999998631 34467888
Q ss_pred HHHHHhhCCCceEEEeeechhHHHHHHHHHHHHhcccccCCCCCCceEEEEecCCCCCCHHHHHhcCC-------ceeEE
Q 038038 62 LRGLVDRNPNYTLTFAGHSLGAGVVALLVLIVVQNLDKLGNIERNKIRCFAIAPTKCMSLNLAVRYEW-------IVNGC 134 (150)
Q Consensus 62 l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~P~v~~~~~a~~~~~-------~i~~i 134 (150)
++++++++|+++|++||||||||+|++++..+..+.+. ........+||||+||+||.+|+..+++ ..+|+
T Consensus 274 Lk~ll~~~p~~kliVTGHSLGGALAtLaA~~L~~~~~~--~~~~ri~~VYTFG~PRVGN~~FA~~~~~~l~~~~~~~~Rv 351 (479)
T PLN00413 274 LKEIFDQNPTSKFILSGHSLGGALAILFTAVLIMHDEE--EMLERLEGVYTFGQPRVGDEDFGIFMKDKLKEFDVKYERY 351 (479)
T ss_pred HHHHHHHCCCCeEEEEecCHHHHHHHHHHHHHHhccch--hhccccceEEEeCCCCCccHHHHHHHHhhhcccCcceEEE
Confidence 99999999999999999999999999999987643111 0112345799999999999999987642 36799
Q ss_pred EeCCccccccCCC
Q 038038 135 ERKGKTEEKEKAM 147 (150)
Q Consensus 135 v~~~D~VP~~~~~ 147 (150)
||.+|+|||+|..
T Consensus 352 Vn~~DiVPrLP~~ 364 (479)
T PLN00413 352 VYCNDMVPRLPFD 364 (479)
T ss_pred EECCCccCCcCCC
Confidence 9999999999963
No 13
>PLN02324 triacylglycerol lipase
Probab=99.97 E-value=4.4e-31 Score=215.20 Aligned_cols=141 Identities=19% Similarity=0.127 Sum_probs=108.1
Q ss_pred CCeEEEEEcCCCCCCccchhhcccCCC-----CC-ccCCCceeeHhHHHHHH-----------HHHHHHHHHHHHHHhhC
Q 038038 7 KTDIVLAIRGLNLAKEGGYAVLLDNKL-----GQ-TKLDGGYVHNGSLKAAR-----------WVFNAECEFLRGLVDRN 69 (150)
Q Consensus 7 ~~~ivva~RGT~~~~d~~~~~~~d~~~-----~~-~~~~~~~vH~Gf~~~~~-----------~~~~~~~~~l~~~~~~~ 69 (150)
++.|||+||||.+..||..|+...... +. ....+++||+||++.+. ++.+++.+.|++++++|
T Consensus 131 rrdIVVafRGT~t~~eWi~Dl~~~~~~~~~~~p~~~~~~~~kVH~GFl~~Yts~~~~~~f~k~SareqVl~eV~~L~~~Y 210 (415)
T PLN02324 131 RRDIVVAWRGTLQPYEWANDFDFPLESAISVFPVTDPKDNPRIGSGWLDIYTASDSRSPYDTTSAQEQVQGELKRLLELY 210 (415)
T ss_pred CceEEEEEccCCCHHHHHHHhccccccccccCCCCCCCCCceeehhHHHHhcCcCcccccchhHHHHHHHHHHHHHHHHC
Confidence 459999999999999986543221110 00 01135799999999986 57788999999999998
Q ss_pred CC--ceEEEeeechhHHHHHHHHHHHHhcccc-c--CC-CCCCceEEEEecCCCCCCHHHHHhcCC----ceeEEEeCCc
Q 038038 70 PN--YTLTFAGHSLGAGVVALLVLIVVQNLDK-L--GN-IERNKIRCFAIAPTKCMSLNLAVRYEW----IVNGCERKGK 139 (150)
Q Consensus 70 ~~--~~i~itGHSLGGalA~l~a~~~~~~~~~-~--g~-~~~~~i~~~tFg~P~v~~~~~a~~~~~----~i~~iv~~~D 139 (150)
|+ ++|++||||||||||+|+|+++...... . +. -+...+.+||||+|||||.+|++.++. .++||+|..|
T Consensus 211 p~e~~sItvTGHSLGGALAtLaA~dl~~~~~n~~~~~~~~~~~~V~v~TFGsPRVGN~~Fa~~~~~~~~~~~~RVvn~~D 290 (415)
T PLN02324 211 KNEEISITFTGHSLGAVMSVLSAADLVYGKKNKINISLQKKQVPITVFAFGSPRIGDHNFKNLVDSLQPLNILRIVNVPD 290 (415)
T ss_pred CCCCceEEEecCcHHHHHHHHHHHHHHHhcccccccccccCCCceEEEEecCCCcCCHHHHHHHHhcCCcceEEEEeCCC
Confidence 75 6899999999999999999998653100 0 00 012468899999999999999987753 4689999999
Q ss_pred cccccCCC
Q 038038 140 TEEKEKAM 147 (150)
Q Consensus 140 ~VP~~~~~ 147 (150)
+||++|..
T Consensus 291 ~VP~lP~~ 298 (415)
T PLN02324 291 VAPHYPLL 298 (415)
T ss_pred cCCcCCCc
Confidence 99999975
No 14
>PLN02753 triacylglycerol lipase
Probab=99.97 E-value=4.6e-31 Score=219.29 Aligned_cols=142 Identities=15% Similarity=0.086 Sum_probs=108.3
Q ss_pred CCeEEEEEcCCCCCCccchhhcc---cCCCCCccC--CCceeeHhHHHHHH-----------HHHHHHHHHHHHHHhhCC
Q 038038 7 KTDIVLAIRGLNLAKEGGYAVLL---DNKLGQTKL--DGGYVHNGSLKAAR-----------WVFNAECEFLRGLVDRNP 70 (150)
Q Consensus 7 ~~~ivva~RGT~~~~d~~~~~~~---d~~~~~~~~--~~~~vH~Gf~~~~~-----------~~~~~~~~~l~~~~~~~~ 70 (150)
++.|||+||||.+..||..|+.. +.......+ .+++||+||++++. ++.+++.+.|++++++|+
T Consensus 226 RRdIVVAfRGT~s~~DWl~DL~~~l~p~~~~~~~~~~~~~kVH~GFl~lYts~d~~s~~~k~S~reQVl~eVkrLl~~Y~ 305 (531)
T PLN02753 226 RRDIAIAWRGTVTKLEWIADLKDYLKPVSENKIRCPDPAVKVESGFLDLYTDKDTTCKFAKFSAREQILTEVKRLVEEHG 305 (531)
T ss_pred CceEEEEECCCCCHHHHHHHhhccccccCcccCCCCCCCcchhHhHHHHHhccCcccccchhhHHHHHHHHHHHHHHHcc
Confidence 35899999999998888544211 111111112 35799999999986 467889999999998874
Q ss_pred -----CceEEEeeechhHHHHHHHHHHHHhccc-ccCCCCCCceEEEEecCCCCCCHHHHHhcC---CceeEEEeCCccc
Q 038038 71 -----NYTLTFAGHSLGAGVVALLVLIVVQNLD-KLGNIERNKIRCFAIAPTKCMSLNLAVRYE---WIVNGCERKGKTE 141 (150)
Q Consensus 71 -----~~~i~itGHSLGGalA~l~a~~~~~~~~-~~g~~~~~~i~~~tFg~P~v~~~~~a~~~~---~~i~~iv~~~D~V 141 (150)
+++|+|||||||||||+|+|+.+....- .....+...|.+||||+|||||.+|++.++ ..++||||..|+|
T Consensus 306 ~e~~~~~sItVTGHSLGGALAtLaA~Dla~~g~n~~~~~~~~pV~vyTFGsPRVGN~aFA~~~~~l~~~~lRVVN~~DiV 385 (531)
T PLN02753 306 DDDDSDLSITVTGHSLGGALAILSAYDIAEMGLNRSKKGKVIPVTVLTYGGPRVGNVRFKDRMEELGVKVLRVVNVHDVV 385 (531)
T ss_pred cccCCCceEEEEccCHHHHHHHHHHHHHHHhcccccccCccCceEEEEeCCCCccCHHHHHHHHhcCCCEEEEEeCCCCc
Confidence 5899999999999999999999876310 000001235889999999999999999875 3578999999999
Q ss_pred cccCCCc
Q 038038 142 EKEKAMV 148 (150)
Q Consensus 142 P~~~~~~ 148 (150)
|++|..+
T Consensus 386 P~lP~~~ 392 (531)
T PLN02753 386 PKSPGLF 392 (531)
T ss_pred ccCCchh
Confidence 9999754
No 15
>KOG4569 consensus Predicted lipase [Lipid transport and metabolism]
Probab=99.97 E-value=3.4e-31 Score=213.36 Aligned_cols=143 Identities=23% Similarity=0.237 Sum_probs=120.8
Q ss_pred cccCCCCeEEEEEcCCCCCCccchhhcccCCCCCccC-CCceeeHhHHHHHHHHHH-HHHHHHHHHHhhCCCceEEEeee
Q 038038 2 VVLQKKTDIVLAIRGLNLAKEGGYAVLLDNKLGQTKL-DGGYVHNGSLKAARWVFN-AECEFLRGLVDRNPNYTLTFAGH 79 (150)
Q Consensus 2 ~~d~~~~~ivva~RGT~~~~d~~~~~~~d~~~~~~~~-~~~~vH~Gf~~~~~~~~~-~~~~~l~~~~~~~~~~~i~itGH 79 (150)
+++++++.|+||||||....+|..+...........+ .+++++.||+++...+++ ++.+.++++++.+|+++|++|||
T Consensus 99 av~~d~~~IvvafRGt~~~~q~~~e~~~~~~~~~~~~~~~g~v~~~f~~~~~~~~~~~~~~~~~~L~~~~~~~~i~vTGH 178 (336)
T KOG4569|consen 99 AVSDDRKAIVVAFRGTNTPLQWIAEFDKSLFPSKPFFPDGGKVEAYFLDAYTSLWNSGLDAELRRLIELYPNYSIWVTGH 178 (336)
T ss_pred EEecCCcEEEEEEccCCChHHHHHHHHhhhccccccccCCceEEEeccchhccccHHHHHHHHHHHHHhcCCcEEEEecC
Confidence 5678899999999999999998654332222222233 688999999999998884 79999999999999999999999
Q ss_pred chhHHHHHHHHHHHHhcccccCCCCCCceEEEEecCCCCCCHHHHHhcC---CceeEEEeCCccccccCCCc
Q 038038 80 SLGAGVVALLVLIVVQNLDKLGNIERNKIRCFAIAPTKCMSLNLAVRYE---WIVNGCERKGKTEEKEKAMV 148 (150)
Q Consensus 80 SLGGalA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~P~v~~~~~a~~~~---~~i~~iv~~~D~VP~~~~~~ 148 (150)
|||||+|+|+|..+...... ...++++||||.||+||.+|++.++ .+++||||.+|+||++|+.+
T Consensus 179 SLGgAlA~laa~~i~~~~~~----~~~~v~v~tFG~PRvGn~~fa~~~d~~~~~s~Rvv~~~DiVP~lP~~~ 246 (336)
T KOG4569|consen 179 SLGGALASLAALDLVKNGLK----TSSPVKVYTFGQPRVGNLAFAEWHDELVPYSFRVVHRRDIVPHLPGIV 246 (336)
T ss_pred ChHHHHHHHHHHHHHHcCCC----CCCceEEEEecCCCcccHHHHHHHHhhCCcEEEEEcCCCCCCCCCCcc
Confidence 99999999999999886321 2468999999999999999999877 57899999999999999874
No 16
>PLN02761 lipase class 3 family protein
Probab=99.97 E-value=7.1e-31 Score=218.01 Aligned_cols=142 Identities=17% Similarity=0.058 Sum_probs=109.1
Q ss_pred CCeEEEEEcCCCCCCccchhhcccCC-CCCccCCCceeeHhHHHHHH-----------HHHHHHHHHHHHHHhhC-----
Q 038038 7 KTDIVLAIRGLNLAKEGGYAVLLDNK-LGQTKLDGGYVHNGSLKAAR-----------WVFNAECEFLRGLVDRN----- 69 (150)
Q Consensus 7 ~~~ivva~RGT~~~~d~~~~~~~d~~-~~~~~~~~~~vH~Gf~~~~~-----------~~~~~~~~~l~~~~~~~----- 69 (150)
++.|||+||||.+..||..|+..... .......+++||+||++++. ++.+++.+.|++++++|
T Consensus 211 RRdIVVAfRGT~t~~EWi~DL~~~lvpa~~~~~~~~kVH~GFls~Yts~~~~~~~~k~SaR~qVl~eV~rL~~~Y~~~~k 290 (527)
T PLN02761 211 RRDIVIAWRGTVTYLEWIYDLKDILCSANFGDDPSIKIELGFHDLYTKKEDSCKFSSFSAREQVLAEVKRLVEYYGTEEE 290 (527)
T ss_pred CceEEEEEcCCCcHHHHHHhccccccccCCCCCCchhHHHHHHHHhhccCccccccchhHHHHHHHHHHHHHHhcccccC
Confidence 35799999999998888654211100 01122356899999999987 56788999999999887
Q ss_pred -CCceEEEeeechhHHHHHHHHHHHHhccccc--CCCCCCceEEEEecCCCCCCHHHHHhcCC---ceeEEEeCCccccc
Q 038038 70 -PNYTLTFAGHSLGAGVVALLVLIVVQNLDKL--GNIERNKIRCFAIAPTKCMSLNLAVRYEW---IVNGCERKGKTEEK 143 (150)
Q Consensus 70 -~~~~i~itGHSLGGalA~l~a~~~~~~~~~~--g~~~~~~i~~~tFg~P~v~~~~~a~~~~~---~i~~iv~~~D~VP~ 143 (150)
++++|++||||||||||+|+|+.+....-.. ...+...|.+||||+|||||.+|++.++. .++||+|..|+||+
T Consensus 291 ~e~~sItVTGHSLGGALAtLaA~DIa~~gln~~~~~~~~~PVtv~TFGsPRVGN~~FA~~~d~l~~~~lRVvN~~D~VP~ 370 (527)
T PLN02761 291 GHEISITVTGHSLGASLALVSAYDIAELNLNHVPENNYKIPITVFSFSGPRVGNLRFKERCDELGVKVLRVVNVHDKVPS 370 (527)
T ss_pred CCCceEEEeccchHHHHHHHHHHHHHHhccccccccccCCceEEEEcCCCCcCCHHHHHHHHhcCCcEEEEEcCCCCcCC
Confidence 4579999999999999999999997531000 00112358999999999999999998763 57899999999999
Q ss_pred cCCCc
Q 038038 144 EKAMV 148 (150)
Q Consensus 144 ~~~~~ 148 (150)
+|+.+
T Consensus 371 lP~~~ 375 (527)
T PLN02761 371 VPGIF 375 (527)
T ss_pred CCccc
Confidence 99854
No 17
>PLN02571 triacylglycerol lipase
Probab=99.97 E-value=1.6e-30 Score=212.28 Aligned_cols=137 Identities=19% Similarity=0.148 Sum_probs=106.3
Q ss_pred CCeEEEEEcCCCCCCccchhhcccCCCCCcc--------CCCceeeHhHHHHHH-----------HHHHHHHHHHHHHHh
Q 038038 7 KTDIVLAIRGLNLAKEGGYAVLLDNKLGQTK--------LDGGYVHNGSLKAAR-----------WVFNAECEFLRGLVD 67 (150)
Q Consensus 7 ~~~ivva~RGT~~~~d~~~~~~~d~~~~~~~--------~~~~~vH~Gf~~~~~-----------~~~~~~~~~l~~~~~ 67 (150)
++.|||+||||.+..||..| +.+.+.+ ..+++||+||++++. ++.+++.+.|+++++
T Consensus 144 rrdIVVAfRGT~t~~eWi~D----l~~~lv~~~~~~g~~~~~~kVH~GF~~~Yts~~~~~~~~k~Sar~qvl~eV~~L~~ 219 (413)
T PLN02571 144 RRDIVIAWRGTVQTLEWVND----FEFNLVSASKIFGESNDQPKVHQGWYSIYTSDDERSPFNKTSARDQVLNEVGRLVE 219 (413)
T ss_pred CceEEEEEcCCCCHHHHHHh----cccceeccccccCCCCCCceeeehHHHhhhccccccccchhhHHHHHHHHHHHHHH
Confidence 46899999999998888654 3222111 124799999999985 567889999999999
Q ss_pred hCCCc--eEEEeeechhHHHHHHHHHHHHhccc-cc--CCCCCCceEEEEecCCCCCCHHHHHhcCC----ceeEEEeCC
Q 038038 68 RNPNY--TLTFAGHSLGAGVVALLVLIVVQNLD-KL--GNIERNKIRCFAIAPTKCMSLNLAVRYEW----IVNGCERKG 138 (150)
Q Consensus 68 ~~~~~--~i~itGHSLGGalA~l~a~~~~~~~~-~~--g~~~~~~i~~~tFg~P~v~~~~~a~~~~~----~i~~iv~~~ 138 (150)
+|++. +|++||||||||||+|+|+.+...-- .. ..-+...+.+||||+|||||.+|++.+++ .++||+|.+
T Consensus 220 ~y~~e~~sI~VTGHSLGGALAtLaA~dl~~~g~n~~~~~~~~~~~V~v~TFGsPRVGN~~Fa~~~~~~~~~~~~RVvN~~ 299 (413)
T PLN02571 220 KYKDEEISITICGHSLGAALATLNAVDIVANGFNRSKSRPNKSCPVTAFVFASPRVGDSDFKKLFSGLKDLRVLRVRNLP 299 (413)
T ss_pred hcCcccccEEEeccchHHHHHHHHHHHHHHhcccccccccccCcceEEEEeCCCCccCHHHHHHHhcccCccEEEEEeCC
Confidence 88764 79999999999999999999875310 00 00001358899999999999999997753 468999999
Q ss_pred ccccccCCC
Q 038038 139 KTEEKEKAM 147 (150)
Q Consensus 139 D~VP~~~~~ 147 (150)
|+||++|.+
T Consensus 300 DiVP~lP~~ 308 (413)
T PLN02571 300 DVIPNYPLI 308 (413)
T ss_pred CCCCcCCCC
Confidence 999999963
No 18
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=99.89 E-value=3e-22 Score=144.29 Aligned_cols=96 Identities=21% Similarity=0.284 Sum_probs=85.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHHHhcccccCCCCCCceEEEEecCCCCCCHHHH
Q 038038 45 NGSLKAARWVFNAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIVVQNLDKLGNIERNKIRCFAIAPTKCMSLNLA 124 (150)
Q Consensus 45 ~Gf~~~~~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~P~v~~~~~a 124 (150)
+||+++++.+++.+.+.+++.++++|+++|++|||||||++|.+++.++.... +...++|++||+|++++.+++
T Consensus 1 ~Gf~~~~~~~~~~i~~~~~~~~~~~p~~~i~v~GHSlGg~lA~l~a~~~~~~~------~~~~~~~~~fg~p~~~~~~~~ 74 (153)
T cd00741 1 KGFYKAARSLANLVLPLLKSALAQYPDYKIHVTGHSLGGALAGLAGLDLRGRG------LGRLVRVYTFGPPRVGNAAFA 74 (153)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEcCHHHHHHHHHHHHHHhcc------CCCceEEEEeCCCcccchHHH
Confidence 58999999999999999999999999999999999999999999999987642 236899999999999999876
Q ss_pred H-----hcCCceeEEEeCCccccccCC
Q 038038 125 V-----RYEWIVNGCERKGKTEEKEKA 146 (150)
Q Consensus 125 ~-----~~~~~i~~iv~~~D~VP~~~~ 146 (150)
. .....+++|++.+|+||++|.
T Consensus 75 ~~~~~~~~~~~~~~i~~~~D~v~~~p~ 101 (153)
T cd00741 75 EDRLDPSDALFVDRIVNDNDIVPRLPP 101 (153)
T ss_pred HHhhhccCCccEEEEEECCCccCCCCC
Confidence 2 234789999999999999976
No 19
>PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function.
Probab=99.60 E-value=3.2e-15 Score=114.57 Aligned_cols=116 Identities=10% Similarity=0.093 Sum_probs=80.1
Q ss_pred CCCeEEEEEcCCC-CCCccchhhcccCCCCCccCCCceeeHhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeeechhHH
Q 038038 6 KKTDIVLAIRGLN-LAKEGGYAVLLDNKLGQTKLDGGYVHNGSLKAARWVFNAECEFLRGLVDRNPNYTLTFAGHSLGAG 84 (150)
Q Consensus 6 ~~~~ivva~RGT~-~~~d~~~~~~~d~~~~~~~~~~~~vH~Gf~~~~~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGa 84 (150)
+.+.++|+||||+ +..+| ..|..+..... . . ....+.+.++++++++++ +|.+|||||||.
T Consensus 35 ~~~~~~vaFRGTd~t~~~W----~ed~~~~~~~~----~-----~----~q~~A~~yl~~~~~~~~~-~i~v~GHSkGGn 96 (224)
T PF11187_consen 35 PDGEYVVAFRGTDDTLVDW----KEDFNMSFQDE----T-----P----QQKSALAYLKKIAKKYPG-KIYVTGHSKGGN 96 (224)
T ss_pred CCCeEEEEEECCCCchhhH----HHHHHhhcCCC----C-----H----HHHHHHHHHHHHHHhCCC-CEEEEEechhhH
Confidence 3678999999995 45555 44544422100 0 0 123456778888888876 499999999999
Q ss_pred HHHHHHHHHHhcccccCCCCCCceEEEEecCCCCCCHH----HHHhcCCceeEEEeCCccccccC
Q 038038 85 VVALLVLIVVQNLDKLGNIERNKIRCFAIAPTKCMSLN----LAVRYEWIVNGCERKGKTEEKEK 145 (150)
Q Consensus 85 lA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~P~v~~~~----~a~~~~~~i~~iv~~~D~VP~~~ 145 (150)
+|..++..+.... .....+||+|.+|.....- -.+...+.|.+++...|+|.-+-
T Consensus 97 LA~yaa~~~~~~~------~~rI~~vy~fDgPGf~~~~~~~~~~~~~~~kI~~~vp~~siVg~ll 155 (224)
T PF11187_consen 97 LAQYAAANCDDEI------QDRISKVYSFDGPGFSEEFLESPGYQRIKDKIHNYVPQSSIVGMLL 155 (224)
T ss_pred HHHHHHHHccHHH------hhheeEEEEeeCCCCChhhcccHhHHHHhhhhEEEcCCcceecccc
Confidence 9999999875431 1256789999999876432 12233478889999999987653
No 20
>KOG2088 consensus Predicted lipase/calmodulin-binding heat-shock protein [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.49 E-value=4.3e-15 Score=126.92 Aligned_cols=142 Identities=38% Similarity=0.553 Sum_probs=122.4
Q ss_pred ccCCCCeEEEEEcC-CCCCCccchhhc-------ccCCCCCccCCCceeeHhHHHHHHHHHHHHHHHHH-HHHhhCCCce
Q 038038 3 VLQKKTDIVLAIRG-LNLAKEGGYAVL-------LDNKLGQTKLDGGYVHNGSLKAARWVFNAECEFLR-GLVDRNPNYT 73 (150)
Q Consensus 3 ~d~~~~~ivva~RG-T~~~~d~~~~~~-------~d~~~~~~~~~~~~vH~Gf~~~~~~~~~~~~~~l~-~~~~~~~~~~ 73 (150)
.||....+++++|| +.+..+...++. .+-+.....+.++.+|.|...+++++.++-...++ +.+..+|+++
T Consensus 174 ~dh~~~~v~~~ir~~~~s~~e~~~~~~~~~~~~~~~~~~~~~~f~~~~~h~g~~~~a~~~~~~~~~~~~~r~~~~~p~~~ 253 (596)
T KOG2088|consen 174 GDHVRLEVVLAIRGALNSAYESDTDVTEAVAHASVLNDFGERKFDGGYVHNGLLKAAAWILAEETATLRSRLWRLYPSYK 253 (596)
T ss_pred cCcchHHHHHHHHhhhcchhhhccccccchhhhhhhccchhhccccccccCcccchHHHHhhccchhhhhhhhhhcCCCc
Confidence 47888899999999 888888776644 34445555678899999999999999998777777 8888999999
Q ss_pred EEEeeechhHHHHHHHHHHHHhcccccCCCCCCceEEEEecCCCCCCHHHHHhcCCceeEEEeCCcccccc
Q 038038 74 LTFAGHSLGAGVVALLVLIVVQNLDKLGNIERNKIRCFAIAPTKCMSLNLAVRYEWIVNGCERKGKTEEKE 144 (150)
Q Consensus 74 i~itGHSLGGalA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~P~v~~~~~a~~~~~~i~~iv~~~D~VP~~ 144 (150)
++++|||+||..+++.+.++..++..++.+++....|++|++|||.....++.+.+.|+.++.+.|.+|.-
T Consensus 254 ~~~~ghslg~~~~~l~~~~~l~~~~~l~~~~~~~~~~f~~a~~rc~~~~~~Et~~~vi~d~~~~s~~~~~r 324 (596)
T KOG2088|consen 254 LTGVGHSLGGLSASLLANCVLRNPAELLLIDKARNFCFVLAPPRCFSLRVAETPFDVITDYVKQSDVLPVR 324 (596)
T ss_pred eeEEecccccchhhhhhHHHhcCHHHHhhccccceEEEEeccccccchhhccCHHHHHHhccccceeeeec
Confidence 99999999999999999988877766666667789999999999988888888889999999999999943
No 21
>KOG4540 consensus Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking, secretion, and vesicular transport; Lipid transport and metabolism]
Probab=99.07 E-value=3.5e-10 Score=88.94 Aligned_cols=69 Identities=17% Similarity=0.171 Sum_probs=51.9
Q ss_pred HHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHHHhcccccCCCCCCceEEEEecCCCCCCHHHHHhc----------
Q 038038 58 ECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIVVQNLDKLGNIERNKIRCFAIAPTKCMSLNLAVRY---------- 127 (150)
Q Consensus 58 ~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~P~v~~~~~a~~~---------- 127 (150)
..+.+...++.||+.+||+||||||||+|+|++..+ .+.+++|.+| |+.--|+..
T Consensus 262 ~ldI~~~v~~~Ypda~iwlTGHSLGGa~AsLlG~~f-------------glP~VaFesP--Gd~~aa~rLhLp~ppglpd 326 (425)
T KOG4540|consen 262 ALDILGAVRRIYPDARIWLTGHSLGGAIASLLGIRF-------------GLPVVAFESP--GDAYAANRLHLPDPPGLPD 326 (425)
T ss_pred HHHHHHHHHHhCCCceEEEeccccchHHHHHhcccc-------------CCceEEecCc--hhhhhhhccCCCCCCCCCc
Confidence 444555566779999999999999999999998753 6778999999 443333332
Q ss_pred -CCceeEEEeCCccc
Q 038038 128 -EWIVNGCERKGKTE 141 (150)
Q Consensus 128 -~~~i~~iv~~~D~V 141 (150)
...|++|=...|+|
T Consensus 327 ~~~~iwHfGhnaDpi 341 (425)
T KOG4540|consen 327 NMEGIWHFGHNADPI 341 (425)
T ss_pred cccceEEeccCCCce
Confidence 23588888888876
No 22
>COG5153 CVT17 Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking and secretion / Lipid metabolism]
Probab=99.07 E-value=3.5e-10 Score=88.94 Aligned_cols=69 Identities=17% Similarity=0.171 Sum_probs=51.9
Q ss_pred HHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHHHhcccccCCCCCCceEEEEecCCCCCCHHHHHhc----------
Q 038038 58 ECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIVVQNLDKLGNIERNKIRCFAIAPTKCMSLNLAVRY---------- 127 (150)
Q Consensus 58 ~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~P~v~~~~~a~~~---------- 127 (150)
..+.+...++.||+.+||+||||||||+|+|++..+ .+.+++|.+| |+.--|+..
T Consensus 262 ~ldI~~~v~~~Ypda~iwlTGHSLGGa~AsLlG~~f-------------glP~VaFesP--Gd~~aa~rLhLp~ppglpd 326 (425)
T COG5153 262 ALDILGAVRRIYPDARIWLTGHSLGGAIASLLGIRF-------------GLPVVAFESP--GDAYAANRLHLPDPPGLPD 326 (425)
T ss_pred HHHHHHHHHHhCCCceEEEeccccchHHHHHhcccc-------------CCceEEecCc--hhhhhhhccCCCCCCCCCc
Confidence 444555566779999999999999999999998753 6778999999 443333332
Q ss_pred -CCceeEEEeCCccc
Q 038038 128 -EWIVNGCERKGKTE 141 (150)
Q Consensus 128 -~~~i~~iv~~~D~V 141 (150)
...|++|=...|+|
T Consensus 327 ~~~~iwHfGhnaDpi 341 (425)
T COG5153 327 NMEGIWHFGHNADPI 341 (425)
T ss_pred cccceEEeccCCCce
Confidence 23588888888876
No 23
>COG3675 Predicted lipase [Lipid metabolism]
Probab=99.04 E-value=1.3e-10 Score=90.89 Aligned_cols=118 Identities=11% Similarity=0.128 Sum_probs=85.5
Q ss_pred ccCCCCeEEEEEcCCCCCCccchhhcccC-CCC---------------CccCCCceeeHhHHHHHHHHHHHHH-HHHHHH
Q 038038 3 VLQKKTDIVLAIRGLNLAKEGGYAVLLDN-KLG---------------QTKLDGGYVHNGSLKAARWVFNAEC-EFLRGL 65 (150)
Q Consensus 3 ~d~~~~~ivva~RGT~~~~d~~~~~~~d~-~~~---------------~~~~~~~~vH~Gf~~~~~~~~~~~~-~~l~~~ 65 (150)
.++-++.++++|||+.+-+||..++-+|- ++. ...+.+...|+++.+.-+..-..+. +..+.+
T Consensus 88 ~~rls~~vi~vf~gs~~Rqdw~~~fd~de~n~~~l~~g~lay~ie~g~~~~ldn~gm~~~~sr~~dtlgmtv~~~q~~~l 167 (332)
T COG3675 88 WSRLSDEVIVVFKGSHSRQDWLLNFDVDERNCRHLCVGELAYRIEAGFYHLLDNEGMHRQPSRNQDTLGMTVIEKQEQTL 167 (332)
T ss_pred HhhcCCcEEEEEeccccccccchhcccchhhhhHHHHHHHHHHhhccceeeccccccccchhhhhhhcCchHHHHHHHHH
Confidence 46677899999999999999865432221 111 1134555688898887555433333 366677
Q ss_pred HhhCCC-ceEEEeeechhHHHHHHHHHHHHhcccccCCCCCCceEEEEecCCCCCCHHHHHh
Q 038038 66 VDRNPN-YTLTFAGHSLGAGVVALLVLIVVQNLDKLGNIERNKIRCFAIAPTKCMSLNLAVR 126 (150)
Q Consensus 66 ~~~~~~-~~i~itGHSLGGalA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~P~v~~~~~a~~ 126 (150)
+++.|. |.+-+||||.|||++.+.+.++..+ ++..+-.++||+.|..++.++.+.
T Consensus 168 leeiP~~Yrig~tghS~g~aii~vrGtyfe~k------~p~vdnlv~tf~~P~itd~r~~Qy 223 (332)
T COG3675 168 LEEIPQGYRIGITGHSSGGAIICVRGTYFERK------YPRVDNLVVTFGQPAITDWRFPQY 223 (332)
T ss_pred HHhcccceEEEEEeecCCccEEEEeccchhcc------cCCcccceeeccCCccccchhHHH
Confidence 788887 8999999999999999999977554 234455677999999999888775
No 24
>COG3675 Predicted lipase [Lipid metabolism]
Probab=98.55 E-value=3.4e-08 Score=77.56 Aligned_cols=122 Identities=14% Similarity=0.035 Sum_probs=77.4
Q ss_pred CCCCeEEEEEcCC--CCCCccchhhcccCCCC-CccC-CCceeeHhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeeec
Q 038038 5 QKKTDIVLAIRGL--NLAKEGGYAVLLDNKLG-QTKL-DGGYVHNGSLKAARWVFNAECEFLRGLVDRNPNYTLTFAGHS 80 (150)
Q Consensus 5 ~~~~~ivva~RGT--~~~~d~~~~~~~d~~~~-~~~~-~~~~vH~Gf~~~~~~~~~~~~~~l~~~~~~~~~~~i~itGHS 80 (150)
+..+.-++++||| +....|.....+-...+ ..+. .+-.||+||+.-+.. +...++.-....+.+.+.+ ||
T Consensus 182 hS~g~aii~vrGtyfe~k~p~vdnlv~tf~~P~itd~r~~QyVh~gF~~~t~r----i~S~l~~ei~~~k~pf~yc--Hs 255 (332)
T COG3675 182 HSSGGAIICVRGTYFERKYPRVDNLVVTFGQPAITDWRFPQYVHEGFAHKTYR----ICSDLDIEIFMPKVPFLYC--HS 255 (332)
T ss_pred ecCCccEEEEeccchhcccCCcccceeeccCCccccchhHHHHHhHHHHHHHH----HhccchHhhcCcCCceEEE--ec
Confidence 4556778999999 55444432111000000 0001 123589999876433 3344454455566666666 99
Q ss_pred hhHHHHHHHHHHHHhcccccCCCCCCceEEEEecCCCCCCHHHHHhcCCceeEEEeCCccccccC
Q 038038 81 LGAGVVALLVLIVVQNLDKLGNIERNKIRCFAIAPTKCMSLNLAVRYEWIVNGCERKGKTEEKEK 145 (150)
Q Consensus 81 LGGalA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~P~v~~~~~a~~~~~~i~~iv~~~D~VP~~~ 145 (150)
+|++.|.+.-. -.+ + +..++.|++ ||||...|++. ....|.||..|.+|..|
T Consensus 256 gg~~~avl~~~--yhn---~----p~~lrLy~y--prVGl~~fae~--il~YR~vNn~d~~p~~p 307 (332)
T COG3675 256 GGLLWAVLGRI--YHN---T----PTWLRLYRY--PRVGLIRFAEY--ILMYRYVNNKDFFPERP 307 (332)
T ss_pred CCccccccccc--ccC---C----chhheeecc--ccccccchHHH--HHHHhhcchhhhccccc
Confidence 99998887711 111 1 367889988 99999999986 33469999999999887
No 25
>KOG2088 consensus Predicted lipase/calmodulin-binding heat-shock protein [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.15 E-value=4e-07 Score=78.47 Aligned_cols=126 Identities=22% Similarity=0.186 Sum_probs=84.4
Q ss_pred ccCCCCeEEEEEcCCCCCCccchhhcccCCCC-----CccC-CCceeeHhHHHHHHHHHHH--HHHHHHHHHhhCCCceE
Q 038038 3 VLQKKTDIVLAIRGLNLAKEGGYAVLLDNKLG-----QTKL-DGGYVHNGSLKAARWVFNA--ECEFLRGLVDRNPNYTL 74 (150)
Q Consensus 3 ~d~~~~~ivva~RGT~~~~d~~~~~~~d~~~~-----~~~~-~~~~vH~Gf~~~~~~~~~~--~~~~l~~~~~~~~~~~i 74 (150)
.|...+..++..|||.+.+|-. +|...+ .... +...-|+ +.++...+. ..+.|.++.+.+|.+..
T Consensus 312 ~d~~~~s~~~~~r~~~sl~d~l----~~v~~e~~~l~~~~~~d~~~~~~---~~~~~~r~~~~~~~~l~~i~~~~~~~~~ 384 (596)
T KOG2088|consen 312 TDYVKQSDVLPVRGATSLDDLL----TDVLLEPELLGLSCIRDDALPER---QAAVDPRSTLAEGSRLLSIVSRKPCRQG 384 (596)
T ss_pred Hhccccceeeeeccccchhhhh----hhhhcCccccccccchhhhhccc---ccccchhhhhCccchhhHHHhhCccccc
Confidence 4677889999999999988853 333322 1111 1222232 333333333 23356677777777666
Q ss_pred EEeeechhHHHHHHHHHHHHhcccccCCCCCCceEEEEecCCCCCCHHHHH-hcCCceeEEEeCCccccccCCCc
Q 038038 75 TFAGHSLGAGVVALLVLIVVQNLDKLGNIERNKIRCFAIAPTKCMSLNLAV-RYEWIVNGCERKGKTEEKEKAMV 148 (150)
Q Consensus 75 ~itGHSLGGalA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~P~v~~~~~a~-~~~~~i~~iv~~~D~VP~~~~~~ 148 (150)
+.|||+||+ ++.+++. +.+.+.||.|++|..+..+... ....++.+++.++|++|+++...
T Consensus 385 -~~~~~l~g~----l~v~lr~--------~~~~l~~~a~s~~~~~~s~~~~e~~~~~~~svvl~~~~~~r~s~~~ 446 (596)
T KOG2088|consen 385 -IFGHVLGGG----LGVDLRR--------EHPVLSCYAYSPPGGLWSERGAERGESFVTSVVLGDDVMPRLSEQS 446 (596)
T ss_pred -cccccccCc----ccccccc--------CCCceeeeecCCCcceecchhHHHHHHHHHhhhcccccccccchhH
Confidence 999999999 4455443 2478999999988877555444 44578999999999999998653
No 26
>PF01083 Cutinase: Cutinase; InterPro: IPR000675 Aerial plant organs are protected by a cuticle composed of an insoluble polymeric structural compound, cutin, which is a polyester composed of hydroxy and hydroxyepoxy fatty acids []. Plant pathogenic fungi produce extracellular degradative enzymes [] that play an important role in pathogenesis. They include cutinase, which hydrolyses cutin, facilitating fungus penetration through the cuticle. Inhibition of the enzyme can prevent fungal infection through intact cuticles. Cutin monomers released from the cuticle by small amounts of cutinase on fungal spore surfaces can greatly increase the amount of cutinase secreted by the spore, the mechanism for which process is as yet unknown [, ]. Cutinase is a serine esterase containing the classical Ser, His, Asp triad of serine hydrolases []. The protein belongs to the alpha-beta class, with a central beta-sheet of 5 parallel strands covered by 5 helices on either side of the sheet. The active site cleft is partly covered by 2 thin bridges formed by amino acid side chains, by contrast with the hydrophobic lid possessed by other lipases []. The protein also contains 2 disulphide bridges, which are essential for activity, their cleavage resulting in complete loss of enzymatic activity []. Two cutinase-like proteins (MtCY39.35 and MtCY339.08c) have been found in the genome of the bacteria Mycobacterium tuberculosis.; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 1XZK_A 1XZA_A 1CUD_C 1XZI_A 1XZH_A 1CUF_A 1FFD_A 2CUT_A 1FFA_A 1CUA_A ....
Probab=97.83 E-value=0.00017 Score=53.45 Aligned_cols=95 Identities=14% Similarity=0.050 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHH--HHhcccccCCCCCCceEEEEecCCCCCC--H
Q 038038 46 GSLKAARWVFNAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLI--VVQNLDKLGNIERNKIRCFAIAPTKCMS--L 121 (150)
Q Consensus 46 Gf~~~~~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~--~~~~~~~~g~~~~~~i~~~tFg~P~v~~--~ 121 (150)
.|..+...=.+.+...|++..++.|+.+|+++|+|.||.++.-+... +... . ......++.||.|+-.. .
T Consensus 55 ~y~~S~~~G~~~~~~~i~~~~~~CP~~kivl~GYSQGA~V~~~~~~~~~l~~~--~----~~~I~avvlfGdP~~~~~~~ 128 (179)
T PF01083_consen 55 SYGDSVAAGVANLVRLIEEYAARCPNTKIVLAGYSQGAMVVGDALSGDGLPPD--V----ADRIAAVVLFGDPRRGAGQP 128 (179)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHSTTSEEEEEEETHHHHHHHHHHHHTTSSHH--H----HHHEEEEEEES-TTTBTTTT
T ss_pred cccccHHHHHHHHHHHHHHHHHhCCCCCEEEEecccccHHHHHHHHhccCChh--h----hhhEEEEEEecCCcccCCcc
Confidence 34444444455677888888888999999999999999988887766 1111 0 01245589999998752 2
Q ss_pred HHHHhcCCceeEEEeCCccccccCC
Q 038038 122 NLAVRYEWIVNGCERKGKTEEKEKA 146 (150)
Q Consensus 122 ~~a~~~~~~i~~iv~~~D~VP~~~~ 146 (150)
.+...+.+.+.++.+.+|+|...+.
T Consensus 129 ~~~~~~~~~~~~~C~~gD~vC~~~~ 153 (179)
T PF01083_consen 129 GIPGDYSDRVRSYCNPGDPVCDASG 153 (179)
T ss_dssp TBTCSCGGGEEEE-BTT-GGGGTSS
T ss_pred ccCcccccceeEEcCCCCcccCCCC
Confidence 3333456789999999999986444
No 27
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=97.80 E-value=8.9e-05 Score=56.87 Aligned_cols=57 Identities=14% Similarity=0.164 Sum_probs=38.9
Q ss_pred HHHHHHHHHhhC-----CCceEEEeeechhHHHHHHHHHHHHhcccccCCCCCCceEEEEecCCCCCCH
Q 038038 58 ECEFLRGLVDRN-----PNYTLTFAGHSLGAGVVALLVLIVVQNLDKLGNIERNKIRCFAIAPTKCMSL 121 (150)
Q Consensus 58 ~~~~l~~~~~~~-----~~~~i~itGHSLGGalA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~P~v~~~ 121 (150)
+.++++.+++.+ +..+|+++||||||=+|..+....... +...-.++|+|+|-.+.+
T Consensus 66 ~~~~i~~i~~~~~~~~~~~~~vilVgHSmGGlvar~~l~~~~~~-------~~~v~~iitl~tPh~g~~ 127 (225)
T PF07819_consen 66 LAEAIKYILELYKSNRPPPRSVILVGHSMGGLVARSALSLPNYD-------PDSVKTIITLGTPHRGSP 127 (225)
T ss_pred HHHHHHHHHHhhhhccCCCCceEEEEEchhhHHHHHHHhccccc-------cccEEEEEEEcCCCCCcc
Confidence 444555555444 678999999999998887776542211 123445999999988854
No 28
>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases.
Probab=97.64 E-value=0.00018 Score=54.77 Aligned_cols=113 Identities=14% Similarity=0.130 Sum_probs=60.4
Q ss_pred CCCeEEEEEcCCCCC-Cccch--h-hcc---cCCCC-----CccCCCceeeHhHHHHHHHHHHHHHHHHHHHHhhCCCce
Q 038038 6 KKTDIVLAIRGLNLA-KEGGY--A-VLL---DNKLG-----QTKLDGGYVHNGSLKAARWVFNAECEFLRGLVDRNPNYT 73 (150)
Q Consensus 6 ~~~~ivva~RGT~~~-~d~~~--~-~~~---d~~~~-----~~~~~~~~vH~Gf~~~~~~~~~~~~~~l~~~~~~~~~~~ 73 (150)
+...+||.+-|=... .||.. + +.. +..-. ........-+.|.-..++.+.+++.+.++....+ ..+
T Consensus 2 ~~~hLvV~vHGL~G~~~d~~~~~~~l~~~~~~~~~~~i~~~~~~~n~~~T~~gI~~~g~rL~~eI~~~~~~~~~~--~~~ 79 (217)
T PF05057_consen 2 KPVHLVVFVHGLWGNPADMRYLKNHLEKIPEDLPNARIVVLGYSNNEFKTFDGIDVCGERLAEEILEHIKDYESK--IRK 79 (217)
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHHHHhhhhcchhhhhhhcccccccccchhhHHHHHHHHHHHHHhccccccc--ccc
Confidence 456788888887653 23321 0 111 11100 0111223456666665555554444443333222 248
Q ss_pred EEEeeechhHHHHHHHHHHHHhcccccC-CCCC-CceEEEEecCCCCCC
Q 038038 74 LTFAGHSLGAGVVALLVLIVVQNLDKLG-NIER-NKIRCFAIAPTKCMS 120 (150)
Q Consensus 74 i~itGHSLGGalA~l~a~~~~~~~~~~g-~~~~-~~i~~~tFg~P~v~~ 120 (150)
|.++||||||-++-.+-..+...+..+. .+.. .....+||+.|-.|.
T Consensus 80 IsfIgHSLGGli~r~al~~~~~~~~~~~~~~~~~~~~~fitlatPH~G~ 128 (217)
T PF05057_consen 80 ISFIGHSLGGLIARYALGLLHDKPQYFPGFFQKIKPHNFITLATPHLGS 128 (217)
T ss_pred ceEEEecccHHHHHHHHHHhhhccccccccccceeeeeEEEeCCCCCCC
Confidence 9999999999999877777665421111 1111 223346779999984
No 29
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=97.59 E-value=0.00017 Score=57.49 Aligned_cols=68 Identities=13% Similarity=0.188 Sum_probs=51.1
Q ss_pred eeHhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHHHhcccccCCCCCCceEEEEecCCCCCCH
Q 038038 43 VHNGSLKAARWVFNAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIVVQNLDKLGNIERNKIRCFAIAPTKCMSL 121 (150)
Q Consensus 43 vH~Gf~~~~~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~P~v~~~ 121 (150)
-.+|....+......+...++...+.+++.++++.||||||.+|...+.... ..+.-....+|..+-.
T Consensus 78 ~~rg~~~~f~~~~~dl~~~~~~~~~~~~~~p~~l~gHSmGg~Ia~~~~~~~~-----------~~i~~~vLssP~~~l~ 145 (298)
T COG2267 78 GQRGHVDSFADYVDDLDAFVETIAEPDPGLPVFLLGHSMGGLIALLYLARYP-----------PRIDGLVLSSPALGLG 145 (298)
T ss_pred CCcCCchhHHHHHHHHHHHHHHHhccCCCCCeEEEEeCcHHHHHHHHHHhCC-----------ccccEEEEECccccCC
Confidence 3666666666667778888888877788999999999999999888777542 3566666677766543
No 30
>PRK10749 lysophospholipase L2; Provisional
Probab=97.41 E-value=0.00039 Score=55.73 Aligned_cols=43 Identities=14% Similarity=0.185 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHH
Q 038038 50 AARWVFNAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLI 92 (150)
Q Consensus 50 ~~~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~ 92 (150)
......+++...++.+.+.++..++.++||||||.+|..++..
T Consensus 109 ~~~~~~~d~~~~~~~~~~~~~~~~~~l~GhSmGG~ia~~~a~~ 151 (330)
T PRK10749 109 RFNDYVDDLAAFWQQEIQPGPYRKRYALAHSMGGAILTLFLQR 151 (330)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCCeEEEEEcHHHHHHHHHHHh
Confidence 3444455666666666555566789999999999999877763
No 31
>KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=97.41 E-value=0.00021 Score=56.62 Aligned_cols=38 Identities=16% Similarity=0.274 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHH
Q 038038 54 VFNAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLI 92 (150)
Q Consensus 54 ~~~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~ 92 (150)
+.+++.+.++++..+-+ -+|.++|||||||+|.-.+..
T Consensus 129 ~~KD~~~~i~~~fge~~-~~iilVGHSmGGaIav~~a~~ 166 (343)
T KOG2564|consen 129 MSKDFGAVIKELFGELP-PQIILVGHSMGGAIAVHTAAS 166 (343)
T ss_pred HHHHHHHHHHHHhccCC-CceEEEeccccchhhhhhhhh
Confidence 34555666666654433 369999999999999665553
No 32
>PF06259 Abhydrolase_8: Alpha/beta hydrolase; InterPro: IPR010427 This is a family of uncharacterised proteins found in Actinobacteria. Computational analysis suggests that they may belong to the alpha-beta hydrolase family of enzymes, as they are predicted to form the core secondary structures and catalytic machinery common to these proteins []. Genomic context suggests that they may function as lipases, controlling the concentration of their putative phospholipid substrates.
Probab=97.40 E-value=0.0016 Score=48.27 Aligned_cols=85 Identities=22% Similarity=0.159 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHhhC-CCceEEEeeechhHHHHHHHHHHHHhcccccCCCCCCceEEEEecCCCCCCHHHHHhcC-
Q 038038 51 ARWVFNAECEFLRGLVDRN-PNYTLTFAGHSLGAGVVALLVLIVVQNLDKLGNIERNKIRCFAIAPTKCMSLNLAVRYE- 128 (150)
Q Consensus 51 ~~~~~~~~~~~l~~~~~~~-~~~~i~itGHSLGGalA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~P~v~~~~~a~~~~- 128 (150)
|+.-...+..+++.+...+ ++.++.+.|||.|.-++-.++.. .. + .--.++.+|+|.++-..-. ++.
T Consensus 87 A~~ga~~L~~f~~gl~a~~~~~~~~tv~GHSYGS~v~G~A~~~--~~---~-----~vddvv~~GSPG~g~~~a~-~l~~ 155 (177)
T PF06259_consen 87 ARAGAPRLARFLDGLRATHGPDAHLTVVGHSYGSTVVGLAAQQ--GG---L-----RVDDVVLVGSPGMGVDSAS-DLGV 155 (177)
T ss_pred HHHHHHHHHHHHHHhhhhcCCCCCEEEEEecchhHHHHHHhhh--CC---C-----CcccEEEECCCCCCCCCHH-HcCC
Confidence 4444555677777777666 88899999999998887777655 11 1 2334788999999854322 232
Q ss_pred --CceeEEEeCCccccccCC
Q 038038 129 --WIVNGCERKGKTEEKEKA 146 (150)
Q Consensus 129 --~~i~~iv~~~D~VP~~~~ 146 (150)
..++.--..+|+|.++|-
T Consensus 156 ~~~~v~a~~a~~D~I~~v~~ 175 (177)
T PF06259_consen 156 PPGHVYAMTAPGDPIAYVPR 175 (177)
T ss_pred CCCcEEEeeCCCCCcccCCC
Confidence 577888899999998864
No 33
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=97.39 E-value=0.00032 Score=56.51 Aligned_cols=49 Identities=12% Similarity=0.278 Sum_probs=34.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHh-------------------hCC-CceEEEeeechhHHHHHHHHHHH
Q 038038 45 NGSLKAARWVFNAECEFLRGLVD-------------------RNP-NYTLTFAGHSLGAGVVALLVLIV 93 (150)
Q Consensus 45 ~Gf~~~~~~~~~~~~~~l~~~~~-------------------~~~-~~~i~itGHSLGGalA~l~a~~~ 93 (150)
.|+...+..+.+++...++.+.+ ++| +.++++.||||||+++..++...
T Consensus 95 ~g~~~~~~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~GhSmGg~i~~~~~~~~ 163 (332)
T TIGR01607 95 RGHINCFDDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIGLSMGGNIALRLLELL 163 (332)
T ss_pred ccchhhHHHHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEeeccCccHHHHHHHHHh
Confidence 34444555556666677766654 355 67899999999999998877654
No 34
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=97.38 E-value=0.00053 Score=57.60 Aligned_cols=64 Identities=16% Similarity=0.125 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHHHhcccccCCCCCCceEEEEecCCCCCCHHH
Q 038038 54 VFNAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIVVQNLDKLGNIERNKIRCFAIAPTKCMSLNL 123 (150)
Q Consensus 54 ~~~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~P~v~~~~~ 123 (150)
..+++.+.|+++.+.+...++.+.||||||.+|..++... ++. ..+..-+.++.|+|--|....
T Consensus 144 ~~~~Lk~lIe~~~~~~g~~kV~LVGHSMGGlva~~fl~~~---p~~---~~k~I~~~I~la~P~~Gs~~~ 207 (440)
T PLN02733 144 TMDGLKKKLETVYKASGGKKVNIISHSMGGLLVKCFMSLH---SDV---FEKYVNSWIAIAAPFQGAPGF 207 (440)
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEEECHhHHHHHHHHHHC---CHh---HHhHhccEEEECCCCCCCchh
Confidence 3456788888888888888999999999999888655431 111 112234578888888887543
No 35
>PHA02857 monoglyceride lipase; Provisional
Probab=97.23 E-value=0.00081 Score=51.88 Aligned_cols=38 Identities=18% Similarity=0.295 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHH
Q 038038 55 FNAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLI 92 (150)
Q Consensus 55 ~~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~ 92 (150)
.+++.+.++.+.+.+++.++.+.|||+||.+|..++..
T Consensus 80 ~~d~~~~l~~~~~~~~~~~~~lvG~S~GG~ia~~~a~~ 117 (276)
T PHA02857 80 VRDVVQHVVTIKSTYPGVPVFLLGHSMGATISILAAYK 117 (276)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEEcCchHHHHHHHHHh
Confidence 34455566555555666789999999999999887753
No 36
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=97.14 E-value=0.0011 Score=52.23 Aligned_cols=40 Identities=30% Similarity=0.245 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhh--CCCceEEEeeechhHHHHHHHHHHHH
Q 038038 55 FNAECEFLRGLVDR--NPNYTLTFAGHSLGAGVVALLVLIVV 94 (150)
Q Consensus 55 ~~~~~~~l~~~~~~--~~~~~i~itGHSLGGalA~l~a~~~~ 94 (150)
.+++.+.|+.+.++ .+..++.++||||||.+|..++..+.
T Consensus 93 ~~~la~~l~~L~~~~g~~~~~i~lIGhSlGa~vAg~~a~~~~ 134 (275)
T cd00707 93 GAELAKFLDFLVDNTGLSLENVHLIGHSLGAHVAGFAGKRLN 134 (275)
T ss_pred HHHHHHHHHHHHHhcCCChHHEEEEEecHHHHHHHHHHHHhc
Confidence 34456666666654 34468999999999999999988653
No 37
>PRK10985 putative hydrolase; Provisional
Probab=97.13 E-value=0.0018 Score=51.83 Aligned_cols=55 Identities=18% Similarity=0.099 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHHHhcccccCCCCCCceEEEEecCCCC
Q 038038 56 NAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIVVQNLDKLGNIERNKIRCFAIAPTKC 118 (150)
Q Consensus 56 ~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~P~v 118 (150)
+++...++.+.++++..+++++||||||.++...+...... .....+++.++|--
T Consensus 115 ~D~~~~i~~l~~~~~~~~~~~vG~S~GG~i~~~~~~~~~~~--------~~~~~~v~i~~p~~ 169 (324)
T PRK10985 115 EDARFFLRWLQREFGHVPTAAVGYSLGGNMLACLLAKEGDD--------LPLDAAVIVSAPLM 169 (324)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEecchHHHHHHHHHhhCCC--------CCccEEEEEcCCCC
Confidence 44556666666667777899999999999866555532111 11345777787743
No 38
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=97.11 E-value=0.00052 Score=54.71 Aligned_cols=41 Identities=22% Similarity=0.364 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHH--hhCCCceEEEeeechhHHHHHHHHHH
Q 038038 52 RWVFNAECEFLRGLV--DRNPNYTLTFAGHSLGAGVVALLVLI 92 (150)
Q Consensus 52 ~~~~~~~~~~l~~~~--~~~~~~~i~itGHSLGGalA~l~a~~ 92 (150)
..+.+.+.+.+++.. +++++...++-|||||||+|.+++..
T Consensus 107 d~~v~D~~~~~~~i~~~~e~~~lp~FL~GeSMGGAV~Ll~~~k 149 (313)
T KOG1455|consen 107 DLVVDDVISFFDSIKEREENKGLPRFLFGESMGGAVALLIALK 149 (313)
T ss_pred HHHHHHHHHHHHHHhhccccCCCCeeeeecCcchHHHHHHHhh
Confidence 344566666777543 46889999999999999999998874
No 39
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=97.08 E-value=0.0036 Score=46.91 Aligned_cols=54 Identities=17% Similarity=0.234 Sum_probs=38.4
Q ss_pred HHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHHHhcccccCCCCCCceEEEEecCCCC
Q 038038 58 ECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIVVQNLDKLGNIERNKIRCFAIAPTKC 118 (150)
Q Consensus 58 ~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~P~v 118 (150)
+..+++.+.+..|+..+.+.|||+||.+|.-+|..|... | ...-.++.+.+|..
T Consensus 52 a~~y~~~I~~~~~~gp~~L~G~S~Gg~lA~E~A~~Le~~----G---~~v~~l~liD~~~p 105 (229)
T PF00975_consen 52 ASRYAEAIRARQPEGPYVLAGWSFGGILAFEMARQLEEA----G---EEVSRLILIDSPPP 105 (229)
T ss_dssp HHHHHHHHHHHTSSSSEEEEEETHHHHHHHHHHHHHHHT----T----SESEEEEESCSST
T ss_pred HHHHHHHhhhhCCCCCeeehccCccHHHHHHHHHHHHHh----h---hccCceEEecCCCC
Confidence 444555556666777899999999999999999988764 2 12335777776543
No 40
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=97.07 E-value=0.0021 Score=53.05 Aligned_cols=67 Identities=15% Similarity=0.139 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHHHhcccccCCCCCCceEEEEecCCCCCCHHHH
Q 038038 53 WVFNAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIVVQNLDKLGNIERNKIRCFAIAPTKCMSLNLA 124 (150)
Q Consensus 53 ~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~P~v~~~~~a 124 (150)
..+.+++..|+++.+.. +.+|+|+||||||-++..+-..+... .+ .++..-+.++.|+|-.|..+..
T Consensus 101 ~~~~~lk~~ie~~~~~~-~~kv~li~HSmGgl~~~~fl~~~~~~--~W--~~~~i~~~i~i~~p~~Gs~~a~ 167 (389)
T PF02450_consen 101 EYFTKLKQLIEEAYKKN-GKKVVLIAHSMGGLVARYFLQWMPQE--EW--KDKYIKRFISIGTPFGGSPKAL 167 (389)
T ss_pred HHHHHHHHHHHHHHHhc-CCcEEEEEeCCCchHHHHHHHhccch--hh--HHhhhhEEEEeCCCCCCChHHH
Confidence 34566888888888777 78999999999998776544433211 00 0123456899999998876543
No 41
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=96.99 E-value=0.0022 Score=47.14 Aligned_cols=36 Identities=17% Similarity=0.132 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHH
Q 038038 57 AECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLI 92 (150)
Q Consensus 57 ~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~ 92 (150)
.+.+.++.+++..+..++.+.|||+||.++..++..
T Consensus 29 ~~~~~~~~~~~~l~~~~~~~vG~S~Gg~~~~~~a~~ 64 (230)
T PF00561_consen 29 DLAADLEALREALGIKKINLVGHSMGGMLALEYAAQ 64 (230)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCeEEEEECCChHHHHHHHHH
Confidence 455556666666566679999999999998877765
No 42
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=96.99 E-value=0.0033 Score=45.38 Aligned_cols=33 Identities=27% Similarity=0.274 Sum_probs=24.0
Q ss_pred HHHHHHHhhCCCceEEEeeechhHHHHHHHHHH
Q 038038 60 EFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLI 92 (150)
Q Consensus 60 ~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~ 92 (150)
+.+.+++++....++.++|||+||.+|..++..
T Consensus 54 ~~l~~~l~~~~~~~~~lvG~S~Gg~~a~~~a~~ 86 (228)
T PF12697_consen 54 EDLAELLDALGIKKVILVGHSMGGMIALRLAAR 86 (228)
T ss_dssp HHHHHHHHHTTTSSEEEEEETHHHHHHHHHHHH
T ss_pred hhhhhcccccccccccccccccccccccccccc
Confidence 344444554444689999999999999888764
No 43
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=96.98 E-value=0.0018 Score=48.67 Aligned_cols=36 Identities=14% Similarity=0.102 Sum_probs=26.8
Q ss_pred HHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHH
Q 038038 58 ECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIV 93 (150)
Q Consensus 58 ~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~ 93 (150)
..+.+.+++++....++.+.|||+||.+|..++...
T Consensus 52 ~~~~l~~~l~~~~~~~~~lvG~S~Gg~va~~~a~~~ 87 (242)
T PRK11126 52 VSRLLSQTLQSYNILPYWLVGYSLGGRIAMYYACQG 87 (242)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECHHHHHHHHHHHhC
Confidence 334444555555567899999999999999998863
No 44
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=96.95 E-value=0.0013 Score=54.40 Aligned_cols=40 Identities=28% Similarity=0.384 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHhhCCCceEEEeeechhHHHHHHHH
Q 038038 51 ARWVFNAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLV 90 (150)
Q Consensus 51 ~~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a 90 (150)
.....+++...++.+..++++.++++.|||+||.+|..++
T Consensus 187 ~~~~~~Dl~~~l~~l~~~~~~~~i~lvGhSmGG~ial~~a 226 (395)
T PLN02652 187 LDYVVEDTEAFLEKIRSENPGVPCFLFGHSTGGAVVLKAA 226 (395)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCEEEEEECHHHHHHHHHH
Confidence 3444556777777777777777899999999999987654
No 45
>PRK11071 esterase YqiA; Provisional
Probab=96.95 E-value=0.0019 Score=48.02 Aligned_cols=35 Identities=29% Similarity=0.305 Sum_probs=26.9
Q ss_pred HHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHH
Q 038038 58 ECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLI 92 (150)
Q Consensus 58 ~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~ 92 (150)
..+.+++++++....++.++||||||.+|..++..
T Consensus 47 ~~~~l~~l~~~~~~~~~~lvG~S~Gg~~a~~~a~~ 81 (190)
T PRK11071 47 AAELLESLVLEHGGDPLGLVGSSLGGYYATWLSQC 81 (190)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECHHHHHHHHHHHH
Confidence 34455666666556689999999999999988875
No 46
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=96.94 E-value=0.002 Score=51.33 Aligned_cols=40 Identities=20% Similarity=0.311 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHhh--CCCceEEEeeechhHHHHHHHHH
Q 038038 52 RWVFNAECEFLRGLVDR--NPNYTLTFAGHSLGAGVVALLVL 91 (150)
Q Consensus 52 ~~~~~~~~~~l~~~~~~--~~~~~i~itGHSLGGalA~l~a~ 91 (150)
....+++...++.+... +++.++.+.||||||++|..++.
T Consensus 112 ~~~~~D~~~~i~~l~~~~~~~~~~i~l~GhSmGG~ia~~~a~ 153 (330)
T PLN02298 112 DLVVEDCLSFFNSVKQREEFQGLPRFLYGESMGGAICLLIHL 153 (330)
T ss_pred HHHHHHHHHHHHHHHhcccCCCCCEEEEEecchhHHHHHHHh
Confidence 34455566677766543 34557999999999999987665
No 47
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=96.91 E-value=0.002 Score=47.42 Aligned_cols=31 Identities=26% Similarity=0.216 Sum_probs=22.4
Q ss_pred HHHHHhhCCCceEEEeeechhHHHHHHHHHH
Q 038038 62 LRGLVDRNPNYTLTFAGHSLGAGVVALLVLI 92 (150)
Q Consensus 62 l~~~~~~~~~~~i~itGHSLGGalA~l~a~~ 92 (150)
+.+.++.....++.+.|||+||.+|..++..
T Consensus 69 ~~~~i~~~~~~~v~liG~S~Gg~~a~~~a~~ 99 (251)
T TIGR02427 69 VLALLDHLGIERAVFCGLSLGGLIAQGLAAR 99 (251)
T ss_pred HHHHHHHhCCCceEEEEeCchHHHHHHHHHH
Confidence 3344443344579999999999999887764
No 48
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=96.84 E-value=0.0027 Score=51.15 Aligned_cols=40 Identities=15% Similarity=0.115 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHhh--CCCceEEEeeechhHHHHHHHHHH
Q 038038 53 WVFNAECEFLRGLVDR--NPNYTLTFAGHSLGAGVVALLVLI 92 (150)
Q Consensus 53 ~~~~~~~~~l~~~~~~--~~~~~i~itGHSLGGalA~l~a~~ 92 (150)
...+++.+.++.+..+ +++.++.++||||||++|..++..
T Consensus 141 ~~~~dv~~~l~~l~~~~~~~~~~~~LvGhSmGG~val~~a~~ 182 (349)
T PLN02385 141 DLVDDVIEHYSKIKGNPEFRGLPSFLFGQSMGGAVALKVHLK 182 (349)
T ss_pred HHHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHh
Confidence 3344555555555432 345579999999999999877653
No 49
>PLN02511 hydrolase
Probab=96.84 E-value=0.0039 Score=51.31 Aligned_cols=38 Identities=24% Similarity=0.240 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHH
Q 038038 55 FNAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLI 92 (150)
Q Consensus 55 ~~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~ 92 (150)
.+++.+.++.+..++++.+++++||||||.++.-.+..
T Consensus 156 ~~Dl~~~i~~l~~~~~~~~~~lvG~SlGg~i~~~yl~~ 193 (388)
T PLN02511 156 TGDLRQVVDHVAGRYPSANLYAAGWSLGANILVNYLGE 193 (388)
T ss_pred hHHHHHHHHHHHHHCCCCCEEEEEechhHHHHHHHHHh
Confidence 34577777777778888899999999999987665543
No 50
>PLN02965 Probable pheophorbidase
Probab=96.83 E-value=0.0023 Score=49.02 Aligned_cols=33 Identities=27% Similarity=0.378 Sum_probs=23.7
Q ss_pred HHHHHHHhhCCC-ceEEEeeechhHHHHHHHHHH
Q 038038 60 EFLRGLVDRNPN-YTLTFAGHSLGAGVVALLVLI 92 (150)
Q Consensus 60 ~~l~~~~~~~~~-~~i~itGHSLGGalA~l~a~~ 92 (150)
+.+.+++++... .+++++||||||.+|..++..
T Consensus 59 ~dl~~~l~~l~~~~~~~lvGhSmGG~ia~~~a~~ 92 (255)
T PLN02965 59 RPLFALLSDLPPDHKVILVGHSIGGGSVTEALCK 92 (255)
T ss_pred HHHHHHHHhcCCCCCEEEEecCcchHHHHHHHHh
Confidence 334444444333 489999999999999988874
No 51
>PRK13604 luxD acyl transferase; Provisional
Probab=96.83 E-value=0.0037 Score=50.22 Aligned_cols=55 Identities=15% Similarity=0.013 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHHHhcccccCCCCCCceEEEEecCCCCCCHHHH
Q 038038 56 NAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIVVQNLDKLGNIERNKIRCFAIAPTKCMSLNLA 124 (150)
Q Consensus 56 ~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~P~v~~~~~a 124 (150)
.++..+++.+.++.. .+|.+.||||||++|.++|.. .++.++...+|-.--.+..
T Consensus 93 ~Dl~aaid~lk~~~~-~~I~LiG~SmGgava~~~A~~-------------~~v~~lI~~sp~~~l~d~l 147 (307)
T PRK13604 93 NSLLTVVDWLNTRGI-NNLGLIAASLSARIAYEVINE-------------IDLSFLITAVGVVNLRDTL 147 (307)
T ss_pred HHHHHHHHHHHhcCC-CceEEEEECHHHHHHHHHhcC-------------CCCCEEEEcCCcccHHHHH
Confidence 445566666655443 479999999999998665541 2355566666665544333
No 52
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=96.82 E-value=0.0029 Score=46.36 Aligned_cols=32 Identities=22% Similarity=0.260 Sum_probs=24.3
Q ss_pred HHHHHhhCCCceEEEeeechhHHHHHHHHHHH
Q 038038 62 LRGLVDRNPNYTLTFAGHSLGAGVVALLVLIV 93 (150)
Q Consensus 62 l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~ 93 (150)
+..+++.....++.+.|||+||.+|..++...
T Consensus 60 ~~~~~~~~~~~~~~l~G~S~Gg~ia~~~a~~~ 91 (251)
T TIGR03695 60 LATLLDQLGIEPFFLVGYSMGGRIALYYALQY 91 (251)
T ss_pred HHHHHHHcCCCeEEEEEeccHHHHHHHHHHhC
Confidence 44444544556899999999999999888753
No 53
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=96.81 E-value=0.0025 Score=49.73 Aligned_cols=33 Identities=12% Similarity=-0.049 Sum_probs=23.7
Q ss_pred HHHHHHhhCCCceEEEeeechhHHHHHHHHHHH
Q 038038 61 FLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIV 93 (150)
Q Consensus 61 ~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~ 93 (150)
.+..++++....++.++|||+||.+|..++...
T Consensus 91 ~l~~~l~~l~~~~~~lvGhS~Gg~va~~~a~~~ 123 (294)
T PLN02824 91 QLNDFCSDVVGDPAFVICNSVGGVVGLQAAVDA 123 (294)
T ss_pred HHHHHHHHhcCCCeEEEEeCHHHHHHHHHHHhC
Confidence 334444333446799999999999998888753
No 54
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=96.78 E-value=0.0039 Score=50.30 Aligned_cols=34 Identities=6% Similarity=-0.016 Sum_probs=27.5
Q ss_pred HHHHHHHHHhhCCCceEEEeeechhHHHHHHHHH
Q 038038 58 ECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVL 91 (150)
Q Consensus 58 ~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~ 91 (150)
+.++++.+.++.+..++.+.|||+||.++..++.
T Consensus 122 ~~~~v~~l~~~~~~~~i~lvGhS~GG~i~~~~~~ 155 (350)
T TIGR01836 122 IDKCVDYICRTSKLDQISLLGICQGGTFSLCYAA 155 (350)
T ss_pred HHHHHHHHHHHhCCCcccEEEECHHHHHHHHHHH
Confidence 5666777777777789999999999998877654
No 55
>PRK10673 acyl-CoA esterase; Provisional
Probab=96.78 E-value=0.0032 Score=47.60 Aligned_cols=28 Identities=32% Similarity=0.409 Sum_probs=21.2
Q ss_pred HHhhCCCceEEEeeechhHHHHHHHHHH
Q 038038 65 LVDRNPNYTLTFAGHSLGAGVVALLVLI 92 (150)
Q Consensus 65 ~~~~~~~~~i~itGHSLGGalA~l~a~~ 92 (150)
+++.....++.++|||+||.+|..++..
T Consensus 74 ~l~~l~~~~~~lvGhS~Gg~va~~~a~~ 101 (255)
T PRK10673 74 TLDALQIEKATFIGHSMGGKAVMALTAL 101 (255)
T ss_pred HHHHcCCCceEEEEECHHHHHHHHHHHh
Confidence 3333343569999999999999988865
No 56
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=96.70 E-value=0.0035 Score=48.51 Aligned_cols=33 Identities=12% Similarity=0.085 Sum_probs=23.4
Q ss_pred HHHHHHHhhCCCceEEEeeechhHHHHHHHHHH
Q 038038 60 EFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLI 92 (150)
Q Consensus 60 ~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~ 92 (150)
+.++.+++.....++.++|||+||.+|..++..
T Consensus 79 ~~~~~~i~~l~~~~~~LvG~S~GG~va~~~a~~ 111 (276)
T TIGR02240 79 KLAARMLDYLDYGQVNAIGVSWGGALAQQFAHD 111 (276)
T ss_pred HHHHHHHHHhCcCceEEEEECHHHHHHHHHHHH
Confidence 333444443333469999999999999988875
No 57
>PRK10566 esterase; Provisional
Probab=96.69 E-value=0.0053 Score=46.58 Aligned_cols=37 Identities=11% Similarity=0.123 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhhC--CCceEEEeeechhHHHHHHHHH
Q 038038 55 FNAECEFLRGLVDRN--PNYTLTFAGHSLGAGVVALLVL 91 (150)
Q Consensus 55 ~~~~~~~l~~~~~~~--~~~~i~itGHSLGGalA~l~a~ 91 (150)
.+++...++.+.+.. ...+|.++|||+||.+|..++.
T Consensus 88 ~~~~~~~~~~l~~~~~~~~~~i~v~G~S~Gg~~al~~~~ 126 (249)
T PRK10566 88 MQEFPTLRAAIREEGWLLDDRLAVGGASMGGMTALGIMA 126 (249)
T ss_pred HHHHHHHHHHHHhcCCcCccceeEEeecccHHHHHHHHH
Confidence 344555555555442 3468999999999999987655
No 58
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=96.64 E-value=0.0044 Score=46.16 Aligned_cols=31 Identities=29% Similarity=0.333 Sum_probs=22.4
Q ss_pred HHHHHhhCCCceEEEeeechhHHHHHHHHHH
Q 038038 62 LRGLVDRNPNYTLTFAGHSLGAGVVALLVLI 92 (150)
Q Consensus 62 l~~~~~~~~~~~i~itGHSLGGalA~l~a~~ 92 (150)
+.++++.....++.+.|||+||.+|..++..
T Consensus 70 ~~~~i~~~~~~~~~l~G~S~Gg~~a~~~a~~ 100 (257)
T TIGR03611 70 VLQLLDALNIERFHFVGHALGGLIGLQLALR 100 (257)
T ss_pred HHHHHHHhCCCcEEEEEechhHHHHHHHHHH
Confidence 3333333334579999999999999988764
No 59
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=96.62 E-value=0.0047 Score=46.62 Aligned_cols=34 Identities=18% Similarity=0.156 Sum_probs=24.2
Q ss_pred HHHHHHHhhCCCceEEEeeechhHHHHHHHHHHH
Q 038038 60 EFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIV 93 (150)
Q Consensus 60 ~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~ 93 (150)
+.+..++++....++.++|||+||.+|..++...
T Consensus 84 ~~~~~~~~~~~~~~~~liG~S~Gg~ia~~~a~~~ 117 (288)
T TIGR01250 84 DELEEVREKLGLDKFYLLGHSWGGMLAQEYALKY 117 (288)
T ss_pred HHHHHHHHHcCCCcEEEEEeehHHHHHHHHHHhC
Confidence 3344444444445699999999999999888753
No 60
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=96.61 E-value=0.02 Score=44.13 Aligned_cols=134 Identities=13% Similarity=0.116 Sum_probs=77.3
Q ss_pred CCCCeEEEEEcCCCCCCc-cch---hhcccCCCCCc----cCCC-ceeeHhHHHH---HHHHHHHHHHHHHHHHhhCCCc
Q 038038 5 QKKTDIVLAIRGLNLAKE-GGY---AVLLDNKLGQT----KLDG-GYVHNGSLKA---ARWVFNAECEFLRGLVDRNPNY 72 (150)
Q Consensus 5 ~~~~~ivva~RGT~~~~d-~~~---~~~~d~~~~~~----~~~~-~~vH~Gf~~~---~~~~~~~~~~~l~~~~~~~~~~ 72 (150)
.+.++++|=+-|=+...+ ... .+..|...... .++. +. -.+|... +......+.+.|+.+.+..+..
T Consensus 15 ~~~~~vlvfVHGyn~~f~~a~~r~aql~~~~~~~~~~i~FsWPS~g~-~~~Y~~d~~~a~~s~~~l~~~L~~L~~~~~~~ 93 (233)
T PF05990_consen 15 SPDKEVLVFVHGYNNSFEDALRRAAQLAHDLGFPGVVILFSWPSDGS-LLGYFYDRESARFSGPALARFLRDLARAPGIK 93 (233)
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEEEcCCCCC-hhhhhhhhhhHHHHHHHHHHHHHHHHhccCCc
Confidence 457889999999876433 111 12223322110 1122 22 2233322 2222334666666666655778
Q ss_pred eEEEeeechhHHHHHHHHHHHHhcccccCCCCCCceEEEEecCCCCCCHHHHHhcC------CceeEEEeCCccc
Q 038038 73 TLTFAGHSLGAGVVALLVLIVVQNLDKLGNIERNKIRCFAIAPTKCMSLNLAVRYE------WIVNGCERKGKTE 141 (150)
Q Consensus 73 ~i~itGHSLGGalA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~P~v~~~~~a~~~~------~~i~~iv~~~D~V 141 (150)
+|.|.+||||+-+..-+-..+........ ....+.-+.+.+|-+-...|...+. ..++-..+.+|.+
T Consensus 94 ~I~ilaHSMG~rv~~~aL~~l~~~~~~~~--~~~~~~~viL~ApDid~d~f~~~~~~~~~~~~~itvy~s~~D~A 166 (233)
T PF05990_consen 94 RIHILAHSMGNRVLLEALRQLASEGERPD--VKARFDNVILAAPDIDNDVFRSQLPDLGSSARRITVYYSRNDRA 166 (233)
T ss_pred eEEEEEeCchHHHHHHHHHHHHhcccchh--hHhhhheEEEECCCCCHHHHHHHHHHHhhcCCCEEEEEcCCchH
Confidence 99999999998876665555544311000 0136777889999998877776542 5677888888854
No 61
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=96.59 E-value=0.0079 Score=44.95 Aligned_cols=36 Identities=19% Similarity=0.170 Sum_probs=27.0
Q ss_pred HHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHH
Q 038038 58 ECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIV 93 (150)
Q Consensus 58 ~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~ 93 (150)
..+.++++.++..+..+.++|+||||-.|+.++-..
T Consensus 45 a~~~l~~~i~~~~~~~~~liGSSlGG~~A~~La~~~ 80 (187)
T PF05728_consen 45 AIAQLEQLIEELKPENVVLIGSSLGGFYATYLAERY 80 (187)
T ss_pred HHHHHHHHHHhCCCCCeEEEEEChHHHHHHHHHHHh
Confidence 445566666666555599999999999999887644
No 62
>PRK00870 haloalkane dehalogenase; Provisional
Probab=96.56 E-value=0.0054 Score=48.13 Aligned_cols=33 Identities=15% Similarity=0.152 Sum_probs=23.7
Q ss_pred HHHHHHHhhCCCceEEEeeechhHHHHHHHHHH
Q 038038 60 EFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLI 92 (150)
Q Consensus 60 ~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~ 92 (150)
+.+.+++++....++.+.|||+||.+|..++..
T Consensus 103 ~~l~~~l~~l~~~~v~lvGhS~Gg~ia~~~a~~ 135 (302)
T PRK00870 103 EWMRSWFEQLDLTDVTLVCQDWGGLIGLRLAAE 135 (302)
T ss_pred HHHHHHHHHcCCCCEEEEEEChHHHHHHHHHHh
Confidence 334444444344579999999999999888874
No 63
>KOG3724 consensus Negative regulator of COPII vesicle formation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.51 E-value=0.0058 Score=54.37 Aligned_cols=42 Identities=12% Similarity=0.188 Sum_probs=28.7
Q ss_pred CceEEEeeechhHHHHHHHHHHHHhcccccCCCCCCceEEEEecCCCCC
Q 038038 71 NYTLTFAGHSLGAGVVALLVLIVVQNLDKLGNIERNKIRCFAIAPTKCM 119 (150)
Q Consensus 71 ~~~i~itGHSLGGalA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~P~v~ 119 (150)
...|.++||||||-+|..+..+-... +...-..+|.++|-..
T Consensus 181 P~sVILVGHSMGGiVAra~~tlkn~~-------~~sVntIITlssPH~a 222 (973)
T KOG3724|consen 181 PHSVILVGHSMGGIVARATLTLKNEV-------QGSVNTIITLSSPHAA 222 (973)
T ss_pred CceEEEEeccchhHHHHHHHhhhhhc-------cchhhhhhhhcCcccC
Confidence 35699999999999998877653222 1233446788877654
No 64
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=96.45 E-value=0.011 Score=43.81 Aligned_cols=42 Identities=17% Similarity=0.136 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhh-----CCCceEEEeeechhHHHHHHHHHHHHhc
Q 038038 55 FNAECEFLRGLVDR-----NPNYTLTFAGHSLGAGVVALLVLIVVQN 96 (150)
Q Consensus 55 ~~~~~~~l~~~~~~-----~~~~~i~itGHSLGGalA~l~a~~~~~~ 96 (150)
.+++.++++.+.+. ....+|.+.|+|-||.+|..++....+.
T Consensus 49 ~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SAGg~la~~~~~~~~~~ 95 (211)
T PF07859_consen 49 LEDVKAAYRWLLKNADKLGIDPERIVLIGDSAGGHLALSLALRARDR 95 (211)
T ss_dssp HHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHT
T ss_pred ccccccceeeeccccccccccccceEEeecccccchhhhhhhhhhhh
Confidence 44455555555554 4556999999999999999999888764
No 65
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=96.45 E-value=0.0056 Score=46.55 Aligned_cols=32 Identities=28% Similarity=0.198 Sum_probs=22.2
Q ss_pred HHHHHHhhCCCceEEEeeechhHHHHHHHHHH
Q 038038 61 FLRGLVDRNPNYTLTFAGHSLGAGVVALLVLI 92 (150)
Q Consensus 61 ~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~ 92 (150)
.+..++++....++.++|||+||.+|..++..
T Consensus 84 ~l~~~i~~~~~~~~~lvG~S~Gg~~a~~~a~~ 115 (278)
T TIGR03056 84 DLSALCAAEGLSPDGVIGHSAGAAIALRLALD 115 (278)
T ss_pred HHHHHHHHcCCCCceEEEECccHHHHHHHHHh
Confidence 33344443334568999999999998888764
No 66
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=96.45 E-value=0.015 Score=45.82 Aligned_cols=36 Identities=19% Similarity=0.107 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHH
Q 038038 56 NAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLI 92 (150)
Q Consensus 56 ~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~ 92 (150)
+++...++.+.+. ...++.++|||+||.+|..++..
T Consensus 84 ~Dv~~ai~~L~~~-~~~~v~LvG~SmGG~vAl~~A~~ 119 (266)
T TIGR03101 84 EDVAAAYRWLIEQ-GHPPVTLWGLRLGALLALDAANP 119 (266)
T ss_pred HHHHHHHHHHHhc-CCCCEEEEEECHHHHHHHHHHHh
Confidence 4455555544443 34689999999999999887754
No 67
>PLN02442 S-formylglutathione hydrolase
Probab=96.37 E-value=0.0076 Score=47.47 Aligned_cols=39 Identities=21% Similarity=0.204 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHH
Q 038038 54 VFNAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLI 92 (150)
Q Consensus 54 ~~~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~ 92 (150)
+.+++.+.+++..+.....++.|+|||+||.+|..++..
T Consensus 125 ~~~~l~~~i~~~~~~~~~~~~~i~G~S~GG~~a~~~a~~ 163 (283)
T PLN02442 125 VVKELPKLLSDNFDQLDTSRASIFGHSMGGHGALTIYLK 163 (283)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEEEChhHHHHHHHHHh
Confidence 344566666666544444679999999999999887774
No 68
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=96.36 E-value=0.018 Score=45.07 Aligned_cols=56 Identities=16% Similarity=0.033 Sum_probs=33.5
Q ss_pred HHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHHHhcccccCCCCCC-ceEEEEecCCCCC
Q 038038 58 ECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIVVQNLDKLGNIERN-KIRCFAIAPTKCM 119 (150)
Q Consensus 58 ~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~~~~~~~~g~~~~~-~i~~~tFg~P~v~ 119 (150)
+..+++.+.++|.-.++-++|||+||-.++ .+++....+ -+.+ --++++.|.|-=|
T Consensus 89 l~~vl~~L~~~Y~~~~~N~VGHSmGg~~~~--~yl~~~~~~----~~~P~l~K~V~Ia~pfng 145 (255)
T PF06028_consen 89 LKKVLKYLKKKYHFKKFNLVGHSMGGLSWT--YYLENYGND----KNLPKLNKLVTIAGPFNG 145 (255)
T ss_dssp HHHHHHHHHHCC--SEEEEEEETHHHHHHH--HHHHHCTTG----TTS-EEEEEEEES--TTT
T ss_pred HHHHHHHHHHhcCCCEEeEEEECccHHHHH--HHHHHhccC----CCCcccceEEEeccccCc
Confidence 567788888888888999999999987664 222222110 0123 3458888888655
No 69
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=96.34 E-value=0.0082 Score=46.92 Aligned_cols=22 Identities=27% Similarity=0.302 Sum_probs=18.9
Q ss_pred CceEEEeeechhHHHHHHHHHH
Q 038038 71 NYTLTFAGHSLGAGVVALLVLI 92 (150)
Q Consensus 71 ~~~i~itGHSLGGalA~l~a~~ 92 (150)
..+++++||||||.++..++..
T Consensus 86 ~~~v~lvGhS~GG~v~~~~a~~ 107 (273)
T PLN02211 86 NEKVILVGHSAGGLSVTQAIHR 107 (273)
T ss_pred CCCEEEEEECchHHHHHHHHHh
Confidence 4689999999999998888754
No 70
>PRK03204 haloalkane dehalogenase; Provisional
Probab=96.29 E-value=0.0084 Score=47.00 Aligned_cols=34 Identities=12% Similarity=0.116 Sum_probs=24.0
Q ss_pred HHHHHHHHhhCCCceEEEeeechhHHHHHHHHHH
Q 038038 59 CEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLI 92 (150)
Q Consensus 59 ~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~ 92 (150)
.+.+..+++.....++.++|||+||.+|..++..
T Consensus 88 ~~~~~~~~~~~~~~~~~lvG~S~Gg~va~~~a~~ 121 (286)
T PRK03204 88 ARVIGEFVDHLGLDRYLSMGQDWGGPISMAVAVE 121 (286)
T ss_pred HHHHHHHHHHhCCCCEEEEEECccHHHHHHHHHh
Confidence 3444444444444579999999999998887764
No 71
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=96.27 E-value=0.011 Score=46.13 Aligned_cols=38 Identities=11% Similarity=0.063 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHhhCCC-ceEEEeeechhHHHHHHHHH
Q 038038 54 VFNAECEFLRGLVDRNPN-YTLTFAGHSLGAGVVALLVL 91 (150)
Q Consensus 54 ~~~~~~~~l~~~~~~~~~-~~i~itGHSLGGalA~l~a~ 91 (150)
..+++.++++.+.++.++ .+|.+.|||+||.+|..++.
T Consensus 81 ~~~d~~~~~~~l~~~~~g~~~i~l~G~S~Gg~~a~~~a~ 119 (274)
T TIGR03100 81 IDADIAAAIDAFREAAPHLRRIVAWGLCDAASAALLYAP 119 (274)
T ss_pred HHHHHHHHHHHHHhhCCCCCcEEEEEECHHHHHHHHHhh
Confidence 345677777777666544 36999999999998877754
No 72
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=96.27 E-value=0.0064 Score=46.70 Aligned_cols=32 Identities=22% Similarity=0.323 Sum_probs=23.8
Q ss_pred HHHHHhhCCCceEEEeeechhHHHHHHHHHHH
Q 038038 62 LRGLVDRNPNYTLTFAGHSLGAGVVALLVLIV 93 (150)
Q Consensus 62 l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~ 93 (150)
+.++++.....++.+.|||+||.+|..++...
T Consensus 91 l~~~l~~l~~~~~~lvG~S~Gg~ia~~~a~~~ 122 (282)
T TIGR03343 91 VKGLMDALDIEKAHLVGNSMGGATALNFALEY 122 (282)
T ss_pred HHHHHHHcCCCCeeEEEECchHHHHHHHHHhC
Confidence 34444444455899999999999999888743
No 73
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=96.26 E-value=0.0093 Score=41.05 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=19.6
Q ss_pred CCceEEEeeechhHHHHHHHHHH
Q 038038 70 PNYTLTFAGHSLGAGVVALLVLI 92 (150)
Q Consensus 70 ~~~~i~itGHSLGGalA~l~a~~ 92 (150)
...+|.+.|||+||.+|..++..
T Consensus 59 ~~~~i~l~G~S~Gg~~a~~~~~~ 81 (145)
T PF12695_consen 59 DPDRIILIGHSMGGAIAANLAAR 81 (145)
T ss_dssp TCCEEEEEEETHHHHHHHHHHHH
T ss_pred CCCcEEEEEEccCcHHHHHHhhh
Confidence 44699999999999988888773
No 74
>PF05277 DUF726: Protein of unknown function (DUF726); InterPro: IPR007941 This family consists of several uncharacterised eukaryotic proteins.
Probab=96.24 E-value=0.078 Score=43.33 Aligned_cols=67 Identities=15% Similarity=0.093 Sum_probs=42.7
Q ss_pred CCceEEEeeechhHHHHHHHHHHHHhcccccCCCCCCceEEEEecCCCCCCHHHHHh----cCCceeEEEeCCccc
Q 038038 70 PNYTLTFAGHSLGAGVVALLVLIVVQNLDKLGNIERNKIRCFAIAPTKCMSLNLAVR----YEWIVNGCERKGKTE 141 (150)
Q Consensus 70 ~~~~i~itGHSLGGalA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~P~v~~~~~a~~----~~~~i~~iv~~~D~V 141 (150)
.+.+|.++|||||+-+-.-+-..+.+. ..++ -.-.++-+|+|...+.+--.. ....+.++=..+|.|
T Consensus 218 G~RpVtLvG~SLGarvI~~cL~~L~~~-~~~~----lVe~VvL~Gapv~~~~~~W~~~r~vVsGr~vN~YS~~D~v 288 (345)
T PF05277_consen 218 GERPVTLVGHSLGARVIYYCLLELAER-KAFG----LVENVVLMGAPVPSDPEEWRKIRSVVSGRLVNVYSENDWV 288 (345)
T ss_pred CCCceEEEeecccHHHHHHHHHHHHhc-cccC----eEeeEEEecCCCCCCHHHHHHHHHHccCeEEEEecCcHHH
Confidence 455799999999988766666666554 2221 123489999999987543222 234455555577765
No 75
>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3.1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....
Probab=96.21 E-value=0.013 Score=47.61 Aligned_cols=50 Identities=24% Similarity=0.236 Sum_probs=33.4
Q ss_pred hHHHHHHHH---HHHHHHHHHHHHhh--CCCceEEEeeechhHHHHHHHHHHHHh
Q 038038 46 GSLKAARWV---FNAECEFLRGLVDR--NPNYTLTFAGHSLGAGVVALLVLIVVQ 95 (150)
Q Consensus 46 Gf~~~~~~~---~~~~~~~l~~~~~~--~~~~~i~itGHSLGGalA~l~a~~~~~ 95 (150)
.+..++..+ -..+-..|+.+.+. .+-.+|.++||||||.+|-+++-.+..
T Consensus 119 ~Y~~a~~n~~~vg~~la~~l~~L~~~~g~~~~~ihlIGhSLGAHvaG~aG~~~~~ 173 (331)
T PF00151_consen 119 NYPQAVANTRLVGRQLAKFLSFLINNFGVPPENIHLIGHSLGAHVAGFAGKYLKG 173 (331)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHH---GGGEEEEEETCHHHHHHHHHHHTTT
T ss_pred cccchhhhHHHHHHHHHHHHHHHHhhcCCChhHEEEEeeccchhhhhhhhhhccC
Confidence 355554433 33355556655532 355789999999999999999998866
No 76
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=96.19 E-value=0.011 Score=44.27 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=25.6
Q ss_pred HHHHHHHHHhhCC--CceEEEeeechhHHHHHHHHHH
Q 038038 58 ECEFLRGLVDRNP--NYTLTFAGHSLGAGVVALLVLI 92 (150)
Q Consensus 58 ~~~~l~~~~~~~~--~~~i~itGHSLGGalA~l~a~~ 92 (150)
+.+.++.+.++++ ..+|.++|||+||.+|..++..
T Consensus 79 ~~~~i~~~~~~~~id~~~i~l~G~S~Gg~~a~~~a~~ 115 (212)
T TIGR01840 79 LHQLIDAVKANYSIDPNRVYVTGLSAGGGMTAVLGCT 115 (212)
T ss_pred HHHHHHHHHHhcCcChhheEEEEECHHHHHHHHHHHh
Confidence 4455555555542 3589999999999998887774
No 77
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=96.16 E-value=0.021 Score=49.20 Aligned_cols=36 Identities=8% Similarity=0.105 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHH
Q 038038 56 NAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVL 91 (150)
Q Consensus 56 ~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~ 91 (150)
+.+.++++.+.+.....++.++|||+||.+++++..
T Consensus 246 ~~i~~al~~v~~~~g~~kv~lvG~cmGGtl~a~ala 281 (532)
T TIGR01838 246 DGVIAALEVVEAITGEKQVNCVGYCIGGTLLSTALA 281 (532)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEECcCcHHHHHHHH
Confidence 346666777766666678999999999999876443
No 78
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=96.11 E-value=0.013 Score=46.17 Aligned_cols=36 Identities=11% Similarity=-0.019 Sum_probs=25.5
Q ss_pred HHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHH
Q 038038 58 ECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIV 93 (150)
Q Consensus 58 ~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~ 93 (150)
+.+.++.+++.....++.++|||+||.+|..++...
T Consensus 81 ~~~dl~~l~~~l~~~~~~lvG~S~GG~ia~~~a~~~ 116 (306)
T TIGR01249 81 LVADIEKLREKLGIKNWLVFGGSWGSTLALAYAQTH 116 (306)
T ss_pred HHHHHHHHHHHcCCCCEEEEEECHHHHHHHHHHHHC
Confidence 334445555544445799999999999998887754
No 79
>PRK03592 haloalkane dehalogenase; Provisional
Probab=96.03 E-value=0.015 Score=45.27 Aligned_cols=23 Identities=13% Similarity=0.076 Sum_probs=19.3
Q ss_pred CCceEEEeeechhHHHHHHHHHH
Q 038038 70 PNYTLTFAGHSLGAGVVALLVLI 92 (150)
Q Consensus 70 ~~~~i~itGHSLGGalA~l~a~~ 92 (150)
...++.++|||+||.+|..++..
T Consensus 91 ~~~~~~lvGhS~Gg~ia~~~a~~ 113 (295)
T PRK03592 91 GLDDVVLVGHDWGSALGFDWAAR 113 (295)
T ss_pred CCCCeEEEEECHHHHHHHHHHHh
Confidence 34579999999999999888764
No 80
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=96.03 E-value=0.015 Score=43.25 Aligned_cols=37 Identities=16% Similarity=0.203 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhhC--CCceEEEeeechhHHHHHHHHH
Q 038038 55 FNAECEFLRGLVDRN--PNYTLTFAGHSLGAGVVALLVL 91 (150)
Q Consensus 55 ~~~~~~~l~~~~~~~--~~~~i~itGHSLGGalA~l~a~ 91 (150)
.+++.+.++.+.+++ ...+|.++|||.||.+|.+++.
T Consensus 45 ~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~~~~~ 83 (213)
T PF00326_consen 45 VDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLALLAAT 83 (213)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhccccccceeEEEEcccccccccchhhc
Confidence 456777778777764 3469999999999999998887
No 81
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=95.99 E-value=0.015 Score=46.55 Aligned_cols=35 Identities=20% Similarity=0.188 Sum_probs=24.9
Q ss_pred HHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHH
Q 038038 58 ECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLI 92 (150)
Q Consensus 58 ~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~ 92 (150)
+.+.+..++++....++.+.|||+||.+|..++..
T Consensus 183 ~~~~~~~~~~~~~~~~~~lvG~S~Gg~~a~~~a~~ 217 (371)
T PRK14875 183 LAAAVLAFLDALGIERAHLVGHSMGGAVALRLAAR 217 (371)
T ss_pred HHHHHHHHHHhcCCccEEEEeechHHHHHHHHHHh
Confidence 33444455555544579999999999999877764
No 82
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=95.99 E-value=0.019 Score=48.42 Aligned_cols=37 Identities=22% Similarity=0.304 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhh--CCCceEEEeeechhHHHHHHHHHH
Q 038038 56 NAECEFLRGLVDR--NPNYTLTFAGHSLGAGVVALLVLI 92 (150)
Q Consensus 56 ~~~~~~l~~~~~~--~~~~~i~itGHSLGGalA~l~a~~ 92 (150)
..+.+.|+.+.++ .+-.++.++||||||.+|..++..
T Consensus 101 ~~la~lI~~L~~~~gl~l~~VhLIGHSLGAhIAg~ag~~ 139 (442)
T TIGR03230 101 KDVAKFVNWMQEEFNYPWDNVHLLGYSLGAHVAGIAGSL 139 (442)
T ss_pred HHHHHHHHHHHHhhCCCCCcEEEEEECHHHHHHHHHHHh
Confidence 3445555555432 344689999999999999998864
No 83
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=95.98 E-value=0.019 Score=47.49 Aligned_cols=32 Identities=22% Similarity=0.204 Sum_probs=22.4
Q ss_pred HHHHHHhhCCCceEEEeeechhHHHHHHHHHH
Q 038038 61 FLRGLVDRNPNYTLTFAGHSLGAGVVALLVLI 92 (150)
Q Consensus 61 ~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~ 92 (150)
.+++.+++....++.+.|||+||.+|..++..
T Consensus 165 ~i~~~~~~l~~~~~~lvGhS~GG~la~~~a~~ 196 (402)
T PLN02894 165 SFEEWRKAKNLSNFILLGHSFGGYVAAKYALK 196 (402)
T ss_pred HHHHHHHHcCCCCeEEEEECHHHHHHHHHHHh
Confidence 33333333333479999999999999988765
No 84
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=95.95 E-value=0.017 Score=46.60 Aligned_cols=36 Identities=14% Similarity=0.045 Sum_probs=25.1
Q ss_pred HHHHHHHHHhhCCCce-EEEeeechhHHHHHHHHHHH
Q 038038 58 ECEFLRGLVDRNPNYT-LTFAGHSLGAGVVALLVLIV 93 (150)
Q Consensus 58 ~~~~l~~~~~~~~~~~-i~itGHSLGGalA~l~a~~~ 93 (150)
..+.+..++++..-.+ +.++||||||.+|..++...
T Consensus 112 ~~~~~~~~~~~l~~~~~~~l~G~S~Gg~ia~~~a~~~ 148 (351)
T TIGR01392 112 DVKAQKLLLDHLGIEQIAAVVGGSMGGMQALEWAIDY 148 (351)
T ss_pred HHHHHHHHHHHcCCCCceEEEEECHHHHHHHHHHHHC
Confidence 3344444454443345 89999999999999888753
No 85
>PRK11460 putative hydrolase; Provisional
Probab=95.95 E-value=0.026 Score=43.17 Aligned_cols=35 Identities=20% Similarity=0.072 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhhC--CCceEEEeeechhHHHHHHHHH
Q 038038 57 AECEFLRGLVDRN--PNYTLTFAGHSLGAGVVALLVL 91 (150)
Q Consensus 57 ~~~~~l~~~~~~~--~~~~i~itGHSLGGalA~l~a~ 91 (150)
.+.+.++.+.+++ +..+|.+.|||+||++|..++.
T Consensus 86 ~l~~~i~~~~~~~~~~~~~i~l~GfS~Gg~~al~~a~ 122 (232)
T PRK11460 86 TFIETVRYWQQQSGVGASATALIGFSQGAIMALEAVK 122 (232)
T ss_pred HHHHHHHHHHHhcCCChhhEEEEEECHHHHHHHHHHH
Confidence 3445555555443 3458999999999999987655
No 86
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=95.95 E-value=0.033 Score=47.17 Aligned_cols=64 Identities=16% Similarity=0.157 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHhhCCC---ceEEEeeechhHHHHHHHHHHHHhcccccCCCCCCceEEEEecCCCC
Q 038038 54 VFNAECEFLRGLVDRNPN---YTLTFAGHSLGAGVVALLVLIVVQNLDKLGNIERNKIRCFAIAPTKC 118 (150)
Q Consensus 54 ~~~~~~~~l~~~~~~~~~---~~i~itGHSLGGalA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~P~v 118 (150)
+.+++.+.++...+++|+ .+++|+|||.||..+..+|..+.+.... +.-..-+++-+..|-|-+
T Consensus 150 ~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~i~~~n~~-~~~~~inLkGi~IGNg~~ 216 (462)
T PTZ00472 150 VSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRINMGNKK-GDGLYINLAGLAVGNGLT 216 (462)
T ss_pred HHHHHHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHHHHhhccc-cCCceeeeEEEEEecccc
Confidence 455567777777777765 6899999999999999999988654211 111123566666666544
No 87
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=95.88 E-value=0.0092 Score=48.24 Aligned_cols=36 Identities=25% Similarity=0.258 Sum_probs=29.0
Q ss_pred HHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHH
Q 038038 58 ECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIV 93 (150)
Q Consensus 58 ~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~ 93 (150)
....+++.+.++-..++.+.|||+||-+|..+|..+
T Consensus 114 ~v~~i~~~~~~~~~~~~~lvghS~Gg~va~~~Aa~~ 149 (326)
T KOG1454|consen 114 LVELIRRFVKEVFVEPVSLVGHSLGGIVALKAAAYY 149 (326)
T ss_pred HHHHHHHHHHhhcCcceEEEEeCcHHHHHHHHHHhC
Confidence 455666677776556799999999999999999875
No 88
>COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.77 E-value=0.022 Score=44.74 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHHHhc
Q 038038 57 AECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIVVQN 96 (150)
Q Consensus 57 ~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~~~~ 96 (150)
.+...+..+.+..|+....+.|||+||.+|.=+|..+...
T Consensus 50 ~a~~yv~~Ir~~QP~GPy~L~G~S~GG~vA~evA~qL~~~ 89 (257)
T COG3319 50 MAAAYVAAIRRVQPEGPYVLLGWSLGGAVAFEVAAQLEAQ 89 (257)
T ss_pred HHHHHHHHHHHhCCCCCEEEEeeccccHHHHHHHHHHHhC
Confidence 4566666677778888999999999999999999988764
No 89
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=95.69 E-value=0.028 Score=43.94 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.3
Q ss_pred CceEEEeeechhHHHHHHHHHH
Q 038038 71 NYTLTFAGHSLGAGVVALLVLI 92 (150)
Q Consensus 71 ~~~i~itGHSLGGalA~l~a~~ 92 (150)
..++.++|||+||.+|..++..
T Consensus 137 ~~~~~~~G~S~GG~~a~~~a~~ 158 (275)
T TIGR02821 137 GERQGITGHSMGGHGALVIALK 158 (275)
T ss_pred CCceEEEEEChhHHHHHHHHHh
Confidence 3579999999999999988875
No 90
>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=95.66 E-value=0.021 Score=46.52 Aligned_cols=39 Identities=18% Similarity=0.151 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHHHh
Q 038038 57 AECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIVVQ 95 (150)
Q Consensus 57 ~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~~~ 95 (150)
++.+.||+......-.+..++|||+||-||+..|+..-+
T Consensus 145 ~fvesiE~WR~~~~L~KmilvGHSfGGYLaa~YAlKyPe 183 (365)
T KOG4409|consen 145 EFVESIEQWRKKMGLEKMILVGHSFGGYLAAKYALKYPE 183 (365)
T ss_pred HHHHHHHHHHHHcCCcceeEeeccchHHHHHHHHHhChH
Confidence 356677777776655689999999999999888876533
No 91
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=95.65 E-value=0.019 Score=42.05 Aligned_cols=21 Identities=24% Similarity=0.226 Sum_probs=18.1
Q ss_pred ceEEEeeechhHHHHHHHHHH
Q 038038 72 YTLTFAGHSLGAGVVALLVLI 92 (150)
Q Consensus 72 ~~i~itGHSLGGalA~l~a~~ 92 (150)
.++.+.|||+||.+|..++..
T Consensus 65 ~~~~lvG~S~Gg~~a~~~a~~ 85 (245)
T TIGR01738 65 DPAIWLGWSLGGLVALHIAAT 85 (245)
T ss_pred CCeEEEEEcHHHHHHHHHHHH
Confidence 579999999999999887753
No 92
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=95.65 E-value=0.023 Score=46.14 Aligned_cols=27 Identities=11% Similarity=0.204 Sum_probs=19.5
Q ss_pred HHhhCCCceEEEeeechhHHHHHHHHH
Q 038038 65 LVDRNPNYTLTFAGHSLGAGVVALLVL 91 (150)
Q Consensus 65 ~~~~~~~~~i~itGHSLGGalA~l~a~ 91 (150)
+++.....++.++|||+||.+|..++.
T Consensus 148 ~l~~l~~~~~~lvGhS~Gg~ia~~~a~ 174 (360)
T PLN02679 148 FLEEVVQKPTVLIGNSVGSLACVIAAS 174 (360)
T ss_pred HHHHhcCCCeEEEEECHHHHHHHHHHH
Confidence 333333457999999999998876664
No 93
>PLN00021 chlorophyllase
Probab=95.54 E-value=0.025 Score=45.48 Aligned_cols=23 Identities=35% Similarity=0.355 Sum_probs=20.0
Q ss_pred ceEEEeeechhHHHHHHHHHHHH
Q 038038 72 YTLTFAGHSLGAGVVALLVLIVV 94 (150)
Q Consensus 72 ~~i~itGHSLGGalA~l~a~~~~ 94 (150)
.++.+.|||+||.+|..++....
T Consensus 126 ~~v~l~GHS~GG~iA~~lA~~~~ 148 (313)
T PLN00021 126 SKLALAGHSRGGKTAFALALGKA 148 (313)
T ss_pred hheEEEEECcchHHHHHHHhhcc
Confidence 47999999999999999987643
No 94
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=95.53 E-value=0.082 Score=42.93 Aligned_cols=77 Identities=25% Similarity=0.324 Sum_probs=47.5
Q ss_pred CcccCCC-Ce-EEEEEcCCCCCCccchh--------------hcccCCC-CCc-cCCCceeeHhHHHHHHHHHHHHHHHH
Q 038038 1 WVVLQKK-TD-IVLAIRGLNLAKEGGYA--------------VLLDNKL-GQT-KLDGGYVHNGSLKAARWVFNAECEFL 62 (150)
Q Consensus 1 ~~~d~~~-~~-ivva~RGT~~~~d~~~~--------------~~~d~~~-~~~-~~~~~~vH~Gf~~~~~~~~~~~~~~l 62 (150)
|+.|+.. +. .+|.+-|-+...++.+. ++.|.+. +.+ +-.-..-|.|.. +++..++
T Consensus 66 w~~~p~~~~~P~vVl~HGL~G~s~s~y~r~L~~~~~~rg~~~Vv~~~Rgcs~~~n~~p~~yh~G~t-------~D~~~~l 138 (345)
T COG0429 66 WSEDPRAAKKPLVVLFHGLEGSSNSPYARGLMRALSRRGWLVVVFHFRGCSGEANTSPRLYHSGET-------EDIRFFL 138 (345)
T ss_pred eccCccccCCceEEEEeccCCCCcCHHHHHHHHHHHhcCCeEEEEecccccCCcccCcceecccch-------hHHHHHH
Confidence 5554333 44 78888888765543321 2333321 111 112246688875 4566677
Q ss_pred HHHHhhCCCceEEEeeechhHH
Q 038038 63 RGLVDRNPNYTLTFAGHSLGAG 84 (150)
Q Consensus 63 ~~~~~~~~~~~i~itGHSLGGa 84 (150)
..+.++++.-+++.+|-||||.
T Consensus 139 ~~l~~~~~~r~~~avG~SLGgn 160 (345)
T COG0429 139 DWLKARFPPRPLYAVGFSLGGN 160 (345)
T ss_pred HHHHHhCCCCceEEEEecccHH
Confidence 7777788889999999999994
No 95
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=95.45 E-value=0.031 Score=44.94 Aligned_cols=21 Identities=29% Similarity=0.139 Sum_probs=17.7
Q ss_pred eEEEeeechhHHHHHHHHHHH
Q 038038 73 TLTFAGHSLGAGVVALLVLIV 93 (150)
Q Consensus 73 ~i~itGHSLGGalA~l~a~~~ 93 (150)
.+.++||||||.+|.-++...
T Consensus 139 ~~~lvG~SmGG~vA~~~A~~~ 159 (343)
T PRK08775 139 LHAFVGYSYGALVGLQFASRH 159 (343)
T ss_pred ceEEEEECHHHHHHHHHHHHC
Confidence 357999999999999888753
No 96
>PLN02578 hydrolase
Probab=95.44 E-value=0.031 Score=45.22 Aligned_cols=34 Identities=18% Similarity=0.257 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHH
Q 038038 56 NAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIV 93 (150)
Q Consensus 56 ~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~ 93 (150)
+++.+.++... ..++++.|||+||.+|..++...
T Consensus 140 ~~l~~~i~~~~----~~~~~lvG~S~Gg~ia~~~A~~~ 173 (354)
T PLN02578 140 DQVADFVKEVV----KEPAVLVGNSLGGFTALSTAVGY 173 (354)
T ss_pred HHHHHHHHHhc----cCCeEEEEECHHHHHHHHHHHhC
Confidence 34444444442 34689999999999999988864
No 97
>PRK10349 carboxylesterase BioH; Provisional
Probab=95.40 E-value=0.029 Score=42.69 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=18.1
Q ss_pred ceEEEeeechhHHHHHHHHHH
Q 038038 72 YTLTFAGHSLGAGVVALLVLI 92 (150)
Q Consensus 72 ~~i~itGHSLGGalA~l~a~~ 92 (150)
.++.++|||+||.+|..++..
T Consensus 74 ~~~~lvGhS~Gg~ia~~~a~~ 94 (256)
T PRK10349 74 DKAIWLGWSLGGLVASQIALT 94 (256)
T ss_pred CCeEEEEECHHHHHHHHHHHh
Confidence 578999999999999988764
No 98
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=95.28 E-value=0.038 Score=43.33 Aligned_cols=38 Identities=26% Similarity=0.529 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhhC--CCceEEEeeechhHHHHHHHHHH
Q 038038 55 FNAECEFLRGLVDRN--PNYTLTFAGHSLGAGVVALLVLI 92 (150)
Q Consensus 55 ~~~~~~~l~~~~~~~--~~~~i~itGHSLGGalA~l~a~~ 92 (150)
.+...+.|++...++ ++.++++.|||.|+-+|.=+.-.
T Consensus 65 I~hk~~~i~~~~~~~~~~~~~liLiGHSIGayi~levl~r 104 (266)
T PF10230_consen 65 IEHKIDFIKELIPQKNKPNVKLILIGHSIGAYIALEVLKR 104 (266)
T ss_pred HHHHHHHHHHHhhhhcCCCCcEEEEeCcHHHHHHHHHHHh
Confidence 445677778877765 77899999999998866544443
No 99
>PLN02517 phosphatidylcholine-sterol O-acyltransferase
Probab=95.20 E-value=0.038 Score=48.10 Aligned_cols=35 Identities=14% Similarity=0.102 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhhCCCceEEEeeechhHHHHHHH
Q 038038 55 FNAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALL 89 (150)
Q Consensus 55 ~~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~ 89 (150)
+.+++..||.+.+.+.+.+++|+||||||-++.-+
T Consensus 196 F~rLK~lIE~ay~~nggkKVVLV~HSMGglv~lyF 230 (642)
T PLN02517 196 LSRLKSNIELMVATNGGKKVVVVPHSMGVLYFLHF 230 (642)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEEeCCchHHHHHH
Confidence 45677888888777777899999999999765543
No 100
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.16 E-value=0.17 Score=41.54 Aligned_cols=88 Identities=15% Similarity=0.072 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHHHhcccc-cCCCCCCceEEEEecCCCCCCHHHHHhcC------
Q 038038 56 NAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIVVQNLDK-LGNIERNKIRCFAIAPTKCMSLNLAVRYE------ 128 (150)
Q Consensus 56 ~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~~~~~~~-~g~~~~~~i~~~tFg~P~v~~~~~a~~~~------ 128 (150)
+++...|+.+.++.+..+|.|..||||.=+..-+---|.-...+ + ..++.=+.+++|.+...-|.....
T Consensus 175 ~aLe~~lr~La~~~~~~~I~ilAHSMGtwl~~e~LrQLai~~~~~l----~~ki~nViLAaPDiD~DVF~~Q~~~mg~~~ 250 (377)
T COG4782 175 PALERLLRYLATDKPVKRIYLLAHSMGTWLLMEALRQLAIRADRPL----PAKIKNVILAAPDIDVDVFSSQIAAMGKPD 250 (377)
T ss_pred HHHHHHHHHHHhCCCCceEEEEEecchHHHHHHHHHHHhccCCcch----hhhhhheEeeCCCCChhhHHHHHHHhcCCC
Confidence 34566666666667788999999999976443332222221111 2 246777788999998665655432
Q ss_pred CceeEEEeCCccccccCCC
Q 038038 129 WIVNGCERKGKTEEKEKAM 147 (150)
Q Consensus 129 ~~i~~iv~~~D~VP~~~~~ 147 (150)
.-++-++-.+|..+.++..
T Consensus 251 ~~ft~~~s~dDral~~s~~ 269 (377)
T COG4782 251 PPFTLFVSRDDRALALSRR 269 (377)
T ss_pred CCeeEEecccchhhccccc
Confidence 4567778888877776654
No 101
>PF08237 PE-PPE: PE-PPE domain; InterPro: IPR013228 The human pathogen Mycobacterium tuberculosis harbours a large number of genes that encode proteins whose N-termini contain the characteristic motifs Pro-Glu (PE) or Pro-Pro-Glu (PPE). A subgroup of the PE proteins contains polymorphic GC-rich sequences (PGRS), while a subgroup of the PPE proteins contains major polymorphic tandem repeats (MPTR). The function of most of these proteins remains unknown []. However, the PE_PGRS proteins from Mycobacterium marinum are secreted by components of the ESX-5 system that belongs to the recently defined type VII secretion systems []. It has also been reported that the PE_PGRS family of proteins contains multiple calcium-binding and glycine-rich sequence motifs GGXGXD/NXUX. This sequence repeat constitutes a calcium-binding parallel beta-roll or parallel beta-helix structure and is found in RTX toxins secreted by many Gram-negative bacteria []. This domain is found C-terminal to the PE (IPR000084 from INTERPRO) and PPE (IPR000030 from INTERPRO) domains. The secondary structure of this domain is predicted to be a mixture of alpha helices and beta strands [].
Probab=95.13 E-value=0.18 Score=38.73 Aligned_cols=75 Identities=12% Similarity=0.033 Sum_probs=51.3
Q ss_pred CCceEEEeeechhHHHHHHHHHHHHhcccccCCCCCCceEEEEecCCCCCCH----HHHH---------hc------CC-
Q 038038 70 PNYTLTFAGHSLGAGVVALLVLIVVQNLDKLGNIERNKIRCFAIAPTKCMSL----NLAV---------RY------EW- 129 (150)
Q Consensus 70 ~~~~i~itGHSLGGalA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~P~v~~~----~~a~---------~~------~~- 129 (150)
++.++++.|+|.|+.+|......+..... .+...++.+.+|-|+--+- .+.. .+ +.
T Consensus 46 ~~~~vvV~GySQGA~Va~~~~~~l~~~~~----~~~~~l~fVl~gnP~rp~GG~~~r~~~~~~ip~~g~t~~~~tp~~~~ 121 (225)
T PF08237_consen 46 AGGPVVVFGYSQGAVVASNVLRRLAADGD----PPPDDLSFVLIGNPRRPNGGILARFPGGSTIPILGVTFTGPTPTDTG 121 (225)
T ss_pred CCCCEEEEEECHHHHHHHHHHHHHHhcCC----CCcCceEEEEecCCCCCCCcchhccCccccccccccccCCCCCCCCC
Confidence 56689999999999999999998877421 1235788888888843321 1111 01 11
Q ss_pred -ceeEEEeCCccccccCCCc
Q 038038 130 -IVNGCERKGKTEEKEKAMV 148 (150)
Q Consensus 130 -~i~~iv~~~D~VP~~~~~~ 148 (150)
-+..+..+.|.+...|...
T Consensus 122 ~~v~~v~~qYDg~aD~P~~p 141 (225)
T PF08237_consen 122 YPVTDVTRQYDGIADFPDYP 141 (225)
T ss_pred cceEEEEEccCccccCCCCC
Confidence 3568889999888777653
No 102
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=95.11 E-value=0.048 Score=44.63 Aligned_cols=34 Identities=15% Similarity=0.008 Sum_probs=23.8
Q ss_pred HHHHHHHhhCCCce-EEEeeechhHHHHHHHHHHH
Q 038038 60 EFLRGLVDRNPNYT-LTFAGHSLGAGVVALLVLIV 93 (150)
Q Consensus 60 ~~l~~~~~~~~~~~-i~itGHSLGGalA~l~a~~~ 93 (150)
+.+..+++...-.+ ..++|||+||.+|..++...
T Consensus 134 ~~~~~~l~~l~~~~~~~lvG~S~Gg~ia~~~a~~~ 168 (379)
T PRK00175 134 RAQARLLDALGITRLAAVVGGSMGGMQALEWAIDY 168 (379)
T ss_pred HHHHHHHHHhCCCCceEEEEECHHHHHHHHHHHhC
Confidence 44444444444345 58999999999998888864
No 103
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=95.06 E-value=0.045 Score=44.62 Aligned_cols=44 Identities=27% Similarity=0.316 Sum_probs=29.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhhC---CCceEEEeeechhHHHHHHH
Q 038038 45 NGSLKAARWVFNAECEFLRGLVDRN---PNYTLTFAGHSLGAGVVALL 89 (150)
Q Consensus 45 ~Gf~~~~~~~~~~~~~~l~~~~~~~---~~~~i~itGHSLGGalA~l~ 89 (150)
+|-.. ...+.+.-...++.+.++. ...+|.+-||||||++|+.+
T Consensus 186 ~G~~s-~~dLv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~A 232 (365)
T PF05677_consen 186 TGPPS-RKDLVKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAEA 232 (365)
T ss_pred CCCCC-HHHHHHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHHH
Confidence 44443 2444555566677666532 23689999999999998864
No 104
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=94.99 E-value=0.048 Score=41.46 Aligned_cols=40 Identities=20% Similarity=0.316 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHH
Q 038038 52 RWVFNAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLI 92 (150)
Q Consensus 52 ~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~ 92 (150)
..+.+++.+.|++.....++. ..|+||||||-.|..+++.
T Consensus 96 ~~l~~el~p~i~~~~~~~~~~-~~i~G~S~GG~~Al~~~l~ 135 (251)
T PF00756_consen 96 TFLTEELIPYIEANYRTDPDR-RAIAGHSMGGYGALYLALR 135 (251)
T ss_dssp HHHHTHHHHHHHHHSSEEECC-EEEEEETHHHHHHHHHHHH
T ss_pred eehhccchhHHHHhcccccce-eEEeccCCCcHHHHHHHHh
Confidence 344556667766665444443 8999999999988877764
No 105
>PRK10162 acetyl esterase; Provisional
Probab=94.97 E-value=0.053 Score=43.37 Aligned_cols=26 Identities=27% Similarity=0.277 Sum_probs=22.6
Q ss_pred CceEEEeeechhHHHHHHHHHHHHhc
Q 038038 71 NYTLTFAGHSLGAGVVALLVLIVVQN 96 (150)
Q Consensus 71 ~~~i~itGHSLGGalA~l~a~~~~~~ 96 (150)
..+|.|.|||.||.+|..++..++..
T Consensus 153 ~~~i~l~G~SaGG~la~~~a~~~~~~ 178 (318)
T PRK10162 153 MSRIGFAGDSAGAMLALASALWLRDK 178 (318)
T ss_pred hhHEEEEEECHHHHHHHHHHHHHHhc
Confidence 45899999999999999999887653
No 106
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=94.96 E-value=0.07 Score=43.09 Aligned_cols=57 Identities=12% Similarity=0.110 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHhh--CCCceEEEeeechhHHHHHHHHHHHHhcccccCCCCCCceEEEEecCCCCCCH
Q 038038 53 WVFNAECEFLRGLVDR--NPNYTLTFAGHSLGAGVVALLVLIVVQNLDKLGNIERNKIRCFAIAPTKCMSL 121 (150)
Q Consensus 53 ~~~~~~~~~l~~~~~~--~~~~~i~itGHSLGGalA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~P~v~~~ 121 (150)
.++.+...+++-+.+. -...+|.++|+|.||++|.++|.. . ++|+...-.-|-.++.
T Consensus 154 ~~~~D~~ravd~l~slpevD~~rI~v~G~SqGG~lal~~aaL--d----------~rv~~~~~~vP~l~d~ 212 (320)
T PF05448_consen 154 RVYLDAVRAVDFLRSLPEVDGKRIGVTGGSQGGGLALAAAAL--D----------PRVKAAAADVPFLCDF 212 (320)
T ss_dssp HHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHH--S----------ST-SEEEEESESSSSH
T ss_pred HHHHHHHHHHHHHHhCCCcCcceEEEEeecCchHHHHHHHHh--C----------ccccEEEecCCCccch
Confidence 3444555555555443 124699999999999999999884 1 3455555555655543
No 107
>PRK04940 hypothetical protein; Provisional
Probab=94.94 E-value=0.11 Score=38.61 Aligned_cols=22 Identities=14% Similarity=0.104 Sum_probs=19.0
Q ss_pred ceEEEeeechhHHHHHHHHHHH
Q 038038 72 YTLTFAGHSLGAGVVALLVLIV 93 (150)
Q Consensus 72 ~~i~itGHSLGGalA~l~a~~~ 93 (150)
.++.++|+||||-.|+-++-..
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~ 81 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLC 81 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHH
Confidence 3689999999999999888764
No 108
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=94.93 E-value=0.057 Score=46.01 Aligned_cols=29 Identities=21% Similarity=0.323 Sum_probs=22.3
Q ss_pred HHHhhCCCceEEEeeechhHHHHHHHHHH
Q 038038 64 GLVDRNPNYTLTFAGHSLGAGVVALLVLI 92 (150)
Q Consensus 64 ~~~~~~~~~~i~itGHSLGGalA~l~a~~ 92 (150)
.+++.....++.+.||||||.+|..++..
T Consensus 266 ~ll~~lg~~k~~LVGhSmGG~iAl~~A~~ 294 (481)
T PLN03087 266 SVLERYKVKSFHIVAHSLGCILALALAVK 294 (481)
T ss_pred HHHHHcCCCCEEEEEECHHHHHHHHHHHh
Confidence 34444455679999999999999888774
No 109
>PRK07581 hypothetical protein; Validated
Probab=94.86 E-value=0.07 Score=42.61 Aligned_cols=22 Identities=18% Similarity=0.089 Sum_probs=18.5
Q ss_pred ce-EEEeeechhHHHHHHHHHHH
Q 038038 72 YT-LTFAGHSLGAGVVALLVLIV 93 (150)
Q Consensus 72 ~~-i~itGHSLGGalA~l~a~~~ 93 (150)
.+ ..++|||+||.+|.-++...
T Consensus 123 ~~~~~lvG~S~GG~va~~~a~~~ 145 (339)
T PRK07581 123 ERLALVVGWSMGAQQTYHWAVRY 145 (339)
T ss_pred CceEEEEEeCHHHHHHHHHHHHC
Confidence 46 47899999999999988854
No 110
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=94.85 E-value=0.14 Score=38.97 Aligned_cols=58 Identities=12% Similarity=0.146 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhhC-CCceEEEeeechhHHHHHHHHHHHHhcccccCCCCCCceEEEEecCC
Q 038038 55 FNAECEFLRGLVDRN-PNYTLTFAGHSLGAGVVALLVLIVVQNLDKLGNIERNKIRCFAIAPT 116 (150)
Q Consensus 55 ~~~~~~~l~~~~~~~-~~~~i~itGHSLGGalA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~P 116 (150)
+.++..+.+..++.+ .+..+++.|||.|+.+..-+--......+ ....-|-+|..|-|
T Consensus 77 y~DV~~AF~~yL~~~n~GRPfILaGHSQGs~~l~~LL~e~~~~~p----l~~rLVAAYliG~~ 135 (207)
T PF11288_consen 77 YSDVRAAFDYYLANYNNGRPFILAGHSQGSMHLLRLLKEEIAGDP----LRKRLVAAYLIGYP 135 (207)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEeChHHHHHHHHHHHHhcCch----HHhhhheeeecCcc
Confidence 556777777777765 45689999999998876655443322211 12345677777776
No 111
>PRK06489 hypothetical protein; Provisional
Probab=94.65 E-value=0.079 Score=42.88 Aligned_cols=21 Identities=19% Similarity=0.056 Sum_probs=17.4
Q ss_pred ceE-EEeeechhHHHHHHHHHH
Q 038038 72 YTL-TFAGHSLGAGVVALLVLI 92 (150)
Q Consensus 72 ~~i-~itGHSLGGalA~l~a~~ 92 (150)
.++ +++||||||.+|..++..
T Consensus 153 ~~~~~lvG~SmGG~vAl~~A~~ 174 (360)
T PRK06489 153 KHLRLILGTSMGGMHAWMWGEK 174 (360)
T ss_pred CceeEEEEECHHHHHHHHHHHh
Confidence 355 489999999999988875
No 112
>PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids []. This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A ....
Probab=94.56 E-value=0.044 Score=41.99 Aligned_cols=35 Identities=14% Similarity=0.343 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHH
Q 038038 56 NAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVL 91 (150)
Q Consensus 56 ~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~ 91 (150)
.+++++|++.++.=.- +|=|+|||+||.+|--.-.
T Consensus 60 ~~l~~fI~~Vl~~TGa-kVDIVgHS~G~~iaR~yi~ 94 (219)
T PF01674_consen 60 KQLRAFIDAVLAYTGA-KVDIVGHSMGGTIARYYIK 94 (219)
T ss_dssp HHHHHHHHHHHHHHT---EEEEEETCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCC-EEEEEEcCCcCHHHHHHHH
Confidence 5688888888764333 9999999999987765543
No 113
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=94.55 E-value=0.061 Score=41.23 Aligned_cols=36 Identities=14% Similarity=0.098 Sum_probs=27.4
Q ss_pred HHHHHHHHHhhCC--CceEEEeeechhHHHHHHHHHHH
Q 038038 58 ECEFLRGLVDRNP--NYTLTFAGHSLGAGVVALLVLIV 93 (150)
Q Consensus 58 ~~~~l~~~~~~~~--~~~i~itGHSLGGalA~l~a~~~ 93 (150)
+...++.+.++|+ ..+|+++|+|.||++|..++...
T Consensus 81 i~~lv~~v~~~~~iD~~RVyv~G~S~Gg~ma~~la~~~ 118 (220)
T PF10503_consen 81 IAALVDYVAARYNIDPSRVYVTGLSNGGMMANVLACAY 118 (220)
T ss_pred HHHHHHhHhhhcccCCCceeeEEECHHHHHHHHHHHhC
Confidence 4455666666663 46999999999999999888753
No 114
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=94.51 E-value=0.064 Score=38.72 Aligned_cols=34 Identities=29% Similarity=0.351 Sum_probs=23.8
Q ss_pred HHHHHHHhhCCCceEEEeeechhHHHHHHHHHHH
Q 038038 60 EFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIV 93 (150)
Q Consensus 60 ~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~ 93 (150)
..++.+.+.....++.+.|||+||.+|..++...
T Consensus 76 ~~~~~~~~~~~~~~~~l~G~S~Gg~~~~~~~~~~ 109 (282)
T COG0596 76 DDLAALLDALGLEKVVLVGHSMGGAVALALALRH 109 (282)
T ss_pred HHHHHHHHHhCCCceEEEEecccHHHHHHHHHhc
Confidence 3444444444444599999999998888877754
No 115
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.45 E-value=0.085 Score=41.02 Aligned_cols=53 Identities=13% Similarity=0.036 Sum_probs=36.2
Q ss_pred ceeeHhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHHHhc
Q 038038 41 GYVHNGSLKAARWVFNAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIVVQN 96 (150)
Q Consensus 41 ~~vH~Gf~~~~~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~~~~ 96 (150)
...+..+......+.+++...+.. .+++....+-||||||.+|-=+|..+.+.
T Consensus 46 ~r~~ep~~~di~~Lad~la~el~~---~~~d~P~alfGHSmGa~lAfEvArrl~~~ 98 (244)
T COG3208 46 DRFGEPLLTDIESLADELANELLP---PLLDAPFALFGHSMGAMLAFEVARRLERA 98 (244)
T ss_pred cccCCcccccHHHHHHHHHHHhcc---ccCCCCeeecccchhHHHHHHHHHHHHHc
Confidence 455666666544444444333332 46777899999999999999888887654
No 116
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=94.44 E-value=0.081 Score=43.81 Aligned_cols=37 Identities=14% Similarity=0.047 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhhCCCceEE-EeeechhHHHHHHHHHHH
Q 038038 57 AECEFLRGLVDRNPNYTLT-FAGHSLGAGVVALLVLIV 93 (150)
Q Consensus 57 ~~~~~l~~~~~~~~~~~i~-itGHSLGGalA~l~a~~~ 93 (150)
++.+.+.+++++..-.++. ++|||+||.+|...+...
T Consensus 145 d~~~~~~~ll~~lgi~~~~~vvG~SmGG~ial~~a~~~ 182 (389)
T PRK06765 145 DFVRVQKELIKSLGIARLHAVMGPSMGGMQAQEWAVHY 182 (389)
T ss_pred HHHHHHHHHHHHcCCCCceEEEEECHHHHHHHHHHHHC
Confidence 3445555555554445665 999999999999888754
No 117
>PLN02872 triacylglycerol lipase
Probab=94.30 E-value=0.11 Score=43.21 Aligned_cols=31 Identities=16% Similarity=0.155 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhhCCCceEEEeeechhHHHHH
Q 038038 56 NAECEFLRGLVDRNPNYTLTFAGHSLGAGVVA 87 (150)
Q Consensus 56 ~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~ 87 (150)
.++.+.++.+++... .++.++|||+||.+|.
T Consensus 145 ~Dl~a~id~i~~~~~-~~v~~VGhS~Gg~~~~ 175 (395)
T PLN02872 145 YDLAEMIHYVYSITN-SKIFIVGHSQGTIMSL 175 (395)
T ss_pred HHHHHHHHHHHhccC-CceEEEEECHHHHHHH
Confidence 356667776665433 5899999999999886
No 118
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=94.19 E-value=0.24 Score=40.48 Aligned_cols=36 Identities=22% Similarity=0.150 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHH
Q 038038 57 AECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIV 93 (150)
Q Consensus 57 ~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~ 93 (150)
+....+..+.++ .-.++-+||-||||.+|.|++...
T Consensus 161 E~~~Ll~Wl~~~-G~~~~g~~G~SmGG~~A~laa~~~ 196 (348)
T PF09752_consen 161 ESRALLHWLERE-GYGPLGLTGISMGGHMAALAASNW 196 (348)
T ss_pred HHHHHHHHHHhc-CCCceEEEEechhHhhHHhhhhcC
Confidence 345555555555 334899999999999999999853
No 119
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=94.16 E-value=0.18 Score=38.16 Aligned_cols=56 Identities=18% Similarity=0.129 Sum_probs=44.1
Q ss_pred ceeeHhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHHHhc
Q 038038 41 GYVHNGSLKAARWVFNAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIVVQN 96 (150)
Q Consensus 41 ~~vH~Gf~~~~~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~~~~ 96 (150)
+....|++.......+...+.|++..++......++.=|||||+.++-++..+.+.
T Consensus 93 ~n~~~G~~~~~~~~~~~~~~~ir~~~e~~d~~~~~~i~~slgGGTGSG~~~~l~~~ 148 (216)
T PF00091_consen 93 NNWAVGYYTFGEEALEEILEQIRKEIEKCDSLDGFFIVHSLGGGTGSGLGPVLAEM 148 (216)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHTSTTESEEEEEEESSSSHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccchhhccccccccceecccccceeccccccccchh
Confidence 35567777666667777888888888887888899999999999888777766553
No 120
>PRK05855 short chain dehydrogenase; Validated
Probab=94.16 E-value=0.09 Score=44.55 Aligned_cols=21 Identities=14% Similarity=0.034 Sum_probs=16.4
Q ss_pred CceEEEeeechhHHHHHHHHH
Q 038038 71 NYTLTFAGHSLGAGVVALLVL 91 (150)
Q Consensus 71 ~~~i~itGHSLGGalA~l~a~ 91 (150)
+.++.+.|||+||.+|..++.
T Consensus 93 ~~~~~lvGhS~Gg~~a~~~a~ 113 (582)
T PRK05855 93 DRPVHLLAHDWGSIQGWEAVT 113 (582)
T ss_pred CCcEEEEecChHHHHHHHHHh
Confidence 445999999999988766544
No 121
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=93.97 E-value=0.1 Score=41.28 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=23.6
Q ss_pred CceEEEeeechhHHHHHHHHHHHHhc
Q 038038 71 NYTLTFAGHSLGAGVVALLVLIVVQN 96 (150)
Q Consensus 71 ~~~i~itGHSLGGalA~l~a~~~~~~ 96 (150)
..+|.+.|||-||.+|..++...+..
T Consensus 151 p~~i~v~GdSAGG~La~~~a~~~~~~ 176 (312)
T COG0657 151 PSRIAVAGDSAGGHLALALALAARDR 176 (312)
T ss_pred ccceEEEecCcccHHHHHHHHHHHhc
Confidence 46899999999999999999998864
No 122
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=93.85 E-value=0.23 Score=37.26 Aligned_cols=37 Identities=22% Similarity=0.178 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhh-CCCceEEEeeechhHHHHHHHHHH
Q 038038 56 NAECEFLRGLVDR-NPNYTLTFAGHSLGAGVVALLVLI 92 (150)
Q Consensus 56 ~~~~~~l~~~~~~-~~~~~i~itGHSLGGalA~l~a~~ 92 (150)
+.+.+.|+...++ .+..+|++.|-|.||++|.-+++.
T Consensus 88 ~~l~~li~~~~~~~i~~~ri~l~GFSQGa~~al~~~l~ 125 (216)
T PF02230_consen 88 ERLDELIDEEVAYGIDPSRIFLGGFSQGAAMALYLALR 125 (216)
T ss_dssp HHHHHHHHHHHHTT--GGGEEEEEETHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCChhheehhhhhhHHHHHHHHHHH
Confidence 3345555555544 356799999999999999888774
No 123
>smart00824 PKS_TE Thioesterase. Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa.
Probab=93.80 E-value=0.18 Score=36.37 Aligned_cols=29 Identities=14% Similarity=0.162 Sum_probs=23.5
Q ss_pred hCCCceEEEeeechhHHHHHHHHHHHHhc
Q 038038 68 RNPNYTLTFAGHSLGAGVVALLVLIVVQN 96 (150)
Q Consensus 68 ~~~~~~i~itGHSLGGalA~l~a~~~~~~ 96 (150)
..+..++.+.|||+||.+|...+..+...
T Consensus 60 ~~~~~~~~l~g~s~Gg~~a~~~a~~l~~~ 88 (212)
T smart00824 60 AAGGRPFVLVGHSSGGLLAHAVAARLEAR 88 (212)
T ss_pred hcCCCCeEEEEECHHHHHHHHHHHHHHhC
Confidence 34556789999999999999888887653
No 124
>KOG2369 consensus Lecithin:cholesterol acyltransferase (LCAT)/Acyl-ceramide synthase [Lipid transport and metabolism]
Probab=93.80 E-value=0.11 Score=43.91 Aligned_cols=32 Identities=13% Similarity=0.131 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHhhCCCceEEEeeechhHHH
Q 038038 54 VFNAECEFLRGLVDRNPNYTLTFAGHSLGAGV 85 (150)
Q Consensus 54 ~~~~~~~~l~~~~~~~~~~~i~itGHSLGGal 85 (150)
.+.+++..||...+.+.+++|++.+|||||-+
T Consensus 164 yl~kLK~~iE~~~~~~G~kkVvlisHSMG~l~ 195 (473)
T KOG2369|consen 164 YLSKLKKKIETMYKLNGGKKVVLISHSMGGLY 195 (473)
T ss_pred HHHHHHHHHHHHHHHcCCCceEEEecCCccHH
Confidence 34557777777777788899999999999763
No 125
>KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=93.75 E-value=0.095 Score=42.26 Aligned_cols=31 Identities=19% Similarity=0.265 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHhhCCCceEEEeeechhH
Q 038038 53 WVFNAECEFLRGLVDRNPNYTLTFAGHSLGA 83 (150)
Q Consensus 53 ~~~~~~~~~l~~~~~~~~~~~i~itGHSLGG 83 (150)
.+.+.+...++.....+...++.+.|||+||
T Consensus 104 ~ma~dv~~Fi~~v~~~~~~~~~~l~GHsmGG 134 (315)
T KOG2382|consen 104 AMAEDVKLFIDGVGGSTRLDPVVLLGHSMGG 134 (315)
T ss_pred HHHHHHHHHHHHcccccccCCceecccCcch
Confidence 3455566666666544456689999999999
No 126
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=93.55 E-value=0.23 Score=41.35 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=18.9
Q ss_pred CceEEEeeechhHHHHHHHHHH
Q 038038 71 NYTLTFAGHSLGAGVVALLVLI 92 (150)
Q Consensus 71 ~~~i~itGHSLGGalA~l~a~~ 92 (150)
..+|.++|||+||.+|..++..
T Consensus 264 ~~ri~l~G~S~GG~~Al~~A~~ 285 (414)
T PRK05077 264 HTRVAAFGFRFGANVAVRLAYL 285 (414)
T ss_pred cccEEEEEEChHHHHHHHHHHh
Confidence 3689999999999999887763
No 127
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=93.42 E-value=0.24 Score=40.95 Aligned_cols=33 Identities=12% Similarity=0.041 Sum_probs=22.2
Q ss_pred HHHHHHHhhCCCceEEEeeechhHHHHHHHHHH
Q 038038 60 EFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLI 92 (150)
Q Consensus 60 ~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~ 92 (150)
+.+..++++....++.++|||+||.+|..++..
T Consensus 185 ~~l~~~i~~l~~~~~~LvG~s~GG~ia~~~a~~ 217 (383)
T PLN03084 185 SSLESLIDELKSDKVSLVVQGYFSPPVVKYASA 217 (383)
T ss_pred HHHHHHHHHhCCCCceEEEECHHHHHHHHHHHh
Confidence 344444444344579999999999887766653
No 128
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=93.31 E-value=0.43 Score=41.48 Aligned_cols=40 Identities=15% Similarity=0.066 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhhCCCceEEEeeechhHHHHHH-HHHHHHh
Q 038038 56 NAECEFLRGLVDRNPNYTLTFAGHSLGAGVVAL-LVLIVVQ 95 (150)
Q Consensus 56 ~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l-~a~~~~~ 95 (150)
+.+.++|+.+.+.....+|.+.|||+||-++++ +|.+...
T Consensus 272 ~~i~~Ald~V~~~tG~~~vnl~GyC~GGtl~a~~~a~~aA~ 312 (560)
T TIGR01839 272 DALKEAVDAVRAITGSRDLNLLGACAGGLTCAALVGHLQAL 312 (560)
T ss_pred HHHHHHHHHHHHhcCCCCeeEEEECcchHHHHHHHHHHHhc
Confidence 356677777776666778999999999999995 4444433
No 129
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=93.15 E-value=0.17 Score=49.16 Aligned_cols=32 Identities=25% Similarity=0.379 Sum_probs=23.0
Q ss_pred HHHHHHhhCCCceEEEeeechhHHHHHHHHHH
Q 038038 61 FLRGLVDRNPNYTLTFAGHSLGAGVVALLVLI 92 (150)
Q Consensus 61 ~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~ 92 (150)
.+..++++....++.++||||||.+|..++..
T Consensus 1434 ~l~~ll~~l~~~~v~LvGhSmGG~iAl~~A~~ 1465 (1655)
T PLN02980 1434 LLYKLIEHITPGKVTLVGYSMGARIALYMALR 1465 (1655)
T ss_pred HHHHHHHHhCCCCEEEEEECHHHHHHHHHHHh
Confidence 33334443344589999999999999988764
No 130
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=93.13 E-value=0.095 Score=43.30 Aligned_cols=20 Identities=25% Similarity=0.403 Sum_probs=16.1
Q ss_pred ceEEEeeechhHHHHHHHHH
Q 038038 72 YTLTFAGHSLGAGVVALLVL 91 (150)
Q Consensus 72 ~~i~itGHSLGGalA~l~a~ 91 (150)
.+|.+.|||+|||.|.-++.
T Consensus 228 ~~i~~~GHSFGGATa~~~l~ 247 (379)
T PF03403_consen 228 SRIGLAGHSFGGATALQALR 247 (379)
T ss_dssp EEEEEEEETHHHHHHHHHHH
T ss_pred hheeeeecCchHHHHHHHHh
Confidence 47999999999997775443
No 131
>COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=92.98 E-value=0.26 Score=39.99 Aligned_cols=60 Identities=7% Similarity=0.065 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHHHhcccccCCCCCCceEEEEecCCCCCCHH
Q 038038 55 FNAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIVVQNLDKLGNIERNKIRCFAIAPTKCMSLN 122 (150)
Q Consensus 55 ~~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~P~v~~~~ 122 (150)
..++...+++.+....-.++.+.|||+||-+.-+..-.+.. ....-++.|.+.|.-|...
T Consensus 110 ~~ql~~~V~~~l~~~ga~~v~LigHS~GG~~~ry~~~~~~~--------~~~V~~~~tl~tp~~Gt~~ 169 (336)
T COG1075 110 GEQLFAYVDEVLAKTGAKKVNLIGHSMGGLDSRYYLGVLGG--------ANRVASVVTLGTPHHGTEL 169 (336)
T ss_pred HHHHHHHHHHHHhhcCCCceEEEeecccchhhHHHHhhcCc--------cceEEEEEEeccCCCCchh
Confidence 34566777777777666789999999999977733322211 0234558899999988653
No 132
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=92.97 E-value=0.22 Score=37.67 Aligned_cols=38 Identities=26% Similarity=0.291 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhhCCCceE-EEeeechhHHHHHHHHHHH
Q 038038 56 NAECEFLRGLVDRNPNYTL-TFAGHSLGAGVVALLVLIV 93 (150)
Q Consensus 56 ~~~~~~l~~~~~~~~~~~i-~itGHSLGGalA~l~a~~~ 93 (150)
++...++..+.+++|+.+. |+.|-|.|+.+|..++...
T Consensus 86 ~Da~aaldW~~~~hp~s~~~~l~GfSFGa~Ia~~la~r~ 124 (210)
T COG2945 86 EDAAAALDWLQARHPDSASCWLAGFSFGAYIAMQLAMRR 124 (210)
T ss_pred HHHHHHHHHHHhhCCCchhhhhcccchHHHHHHHHHHhc
Confidence 4577888888899998877 9999999999999999875
No 133
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.90 E-value=0.12 Score=41.09 Aligned_cols=41 Identities=20% Similarity=0.225 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHhhC--CCceEEEeeechhHHHHHHHHHH
Q 038038 52 RWVFNAECEFLRGLVDRN--PNYTLTFAGHSLGAGVVALLVLI 92 (150)
Q Consensus 52 ~~~~~~~~~~l~~~~~~~--~~~~i~itGHSLGGalA~l~a~~ 92 (150)
+.++.++..+++-+.+.. .+.+|-+||-|.||+||..++..
T Consensus 154 r~v~~D~~~ave~~~sl~~vde~Ri~v~G~SqGGglalaaaal 196 (321)
T COG3458 154 RGVFLDAVRAVEILASLDEVDEERIGVTGGSQGGGLALAAAAL 196 (321)
T ss_pred eeehHHHHHHHHHHhccCccchhheEEeccccCchhhhhhhhc
Confidence 344555666666666543 46799999999999999988874
No 134
>COG1647 Esterase/lipase [General function prediction only]
Probab=92.14 E-value=0.48 Score=36.61 Aligned_cols=37 Identities=16% Similarity=0.166 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHh-hCCCceEEEeeechhHHHHHHHHHHH
Q 038038 55 FNAECEFLRGLVD-RNPNYTLTFAGHSLGAGVVALLVLIV 93 (150)
Q Consensus 55 ~~~~~~~l~~~~~-~~~~~~i~itGHSLGGalA~l~a~~~ 93 (150)
++++.+..+.+.+ .|+ +|.++|-||||-+|..+|..+
T Consensus 69 ~~~v~d~Y~~L~~~gy~--eI~v~GlSmGGv~alkla~~~ 106 (243)
T COG1647 69 WEDVEDGYRDLKEAGYD--EIAVVGLSMGGVFALKLAYHY 106 (243)
T ss_pred HHHHHHHHHHHHHcCCC--eEEEEeecchhHHHHHHHhhC
Confidence 4556777777774 354 799999999999888888754
No 135
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=91.85 E-value=0.39 Score=43.37 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=21.3
Q ss_pred CCCceEEEeeechhHHHHHHHHHH
Q 038038 69 NPNYTLTFAGHSLGAGVVALLVLI 92 (150)
Q Consensus 69 ~~~~~i~itGHSLGGalA~l~a~~ 92 (150)
++..++.+.||||||-++..++..
T Consensus 552 ~~~~~V~~lGHSLGgiig~~~~~~ 575 (792)
T TIGR03502 552 IDGSKVSFLGHSLGGIVGTSFIAY 575 (792)
T ss_pred CCCCcEEEEecCHHHHHHHHHHHh
Confidence 567899999999999999988865
No 136
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=91.80 E-value=0.29 Score=42.17 Aligned_cols=38 Identities=11% Similarity=0.023 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhh-CCCceEEEeeechhHHHHHHHHHH
Q 038038 55 FNAECEFLRGLVDR-NPNYTLTFAGHSLGAGVVALLVLI 92 (150)
Q Consensus 55 ~~~~~~~l~~~~~~-~~~~~i~itGHSLGGalA~l~a~~ 92 (150)
.+++.+.|+.+.++ ..+.+|.++|||+||.+|.+++..
T Consensus 79 ~~D~~~~i~~l~~q~~~~~~v~~~G~S~GG~~a~~~a~~ 117 (550)
T TIGR00976 79 AADGYDLVDWIAKQPWCDGNVGMLGVSYLAVTQLLAAVL 117 (550)
T ss_pred chHHHHHHHHHHhCCCCCCcEEEEEeChHHHHHHHHhcc
Confidence 44566777766654 345699999999999988888764
No 137
>KOG2385 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.74 E-value=1.6 Score=37.63 Aligned_cols=48 Identities=23% Similarity=0.285 Sum_probs=33.1
Q ss_pred CCceEEEeeechhHHHHHHHHHHHHhcccccCCCCCCce-EEEEecCCCCCCHHH
Q 038038 70 PNYTLTFAGHSLGAGVVALLVLIVVQNLDKLGNIERNKI-RCFAIAPTKCMSLNL 123 (150)
Q Consensus 70 ~~~~i~itGHSLGGalA~l~a~~~~~~~~~~g~~~~~~i-~~~tFg~P~v~~~~~ 123 (150)
..-.|+++|.|||+-+---+-..|.++ .++ ..| .||-||+|-+...+.
T Consensus 445 G~RPVTLVGFSLGARvIf~CL~~Lakk-ke~-----~iIEnViL~GaPv~~k~~~ 493 (633)
T KOG2385|consen 445 GNRPVTLVGFSLGARVIFECLLELAKK-KEV-----GIIENVILFGAPVPTKAKL 493 (633)
T ss_pred CCCceeEeeeccchHHHHHHHHHHhhc-ccc-----cceeeeeeccCCccCCHHH
Confidence 345799999999987655444555443 233 344 499999999987653
No 138
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=91.63 E-value=0.43 Score=35.35 Aligned_cols=29 Identities=17% Similarity=0.219 Sum_probs=23.4
Q ss_pred hhCCCceEEEeeechhHHHHHHHHHHHHh
Q 038038 67 DRNPNYTLTFAGHSLGAGVVALLVLIVVQ 95 (150)
Q Consensus 67 ~~~~~~~i~itGHSLGGalA~l~a~~~~~ 95 (150)
+...+-++++-|||+||-+|++++-.+..
T Consensus 84 ~~l~~gpLi~GGkSmGGR~aSmvade~~A 112 (213)
T COG3571 84 AGLAEGPLIIGGKSMGGRVASMVADELQA 112 (213)
T ss_pred hcccCCceeeccccccchHHHHHHHhhcC
Confidence 33444579999999999999999998744
No 139
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=91.59 E-value=1.3 Score=32.98 Aligned_cols=32 Identities=25% Similarity=0.258 Sum_probs=20.2
Q ss_pred HHHHHHhhCCCceEEEeeechhHHHHHHHHHHH
Q 038038 61 FLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIV 93 (150)
Q Consensus 61 ~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~ 93 (150)
.+++..... +..+++++||||.+.+.-.+...
T Consensus 49 ~l~~~v~a~-~~~~vlVAHSLGc~~v~h~~~~~ 80 (181)
T COG3545 49 RLEKEVNAA-EGPVVLVAHSLGCATVAHWAEHI 80 (181)
T ss_pred HHHHHHhcc-CCCeEEEEecccHHHHHHHHHhh
Confidence 344444333 34599999999988665555544
No 140
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=91.55 E-value=0.27 Score=41.08 Aligned_cols=54 Identities=20% Similarity=0.242 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHHHhcccccCCCCCCceEEEEecCC
Q 038038 55 FNAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIVVQNLDKLGNIERNKIRCFAIAPT 116 (150)
Q Consensus 55 ~~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~P 116 (150)
-+++++.++.+.++||+.+++.+|-||||+ ++.-+|-+..+ +.+-+...+...|
T Consensus 181 t~Dl~~~v~~i~~~~P~a~l~avG~S~Gg~---iL~nYLGE~g~-----~~~l~~a~~v~~P 234 (409)
T KOG1838|consen 181 TEDLREVVNHIKKRYPQAPLFAVGFSMGGN---ILTNYLGEEGD-----NTPLIAAVAVCNP 234 (409)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEecchHH---HHHHHhhhccC-----CCCceeEEEEecc
Confidence 356889999999999999999999999976 45556654321 1234455665555
No 141
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=91.51 E-value=0.24 Score=38.81 Aligned_cols=39 Identities=15% Similarity=0.122 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHhhC-CCceEEEeeechhHHHHHHHHHH
Q 038038 54 VFNAECEFLRGLVDRN-PNYTLTFAGHSLGAGVVALLVLI 92 (150)
Q Consensus 54 ~~~~~~~~l~~~~~~~-~~~~i~itGHSLGGalA~l~a~~ 92 (150)
++.++++..+.+.+.+ ++.+|.+-|||+|.+.+.-+|..
T Consensus 111 ~y~Di~avye~Lr~~~g~~~~Iil~G~SiGt~~tv~Lasr 150 (258)
T KOG1552|consen 111 LYADIKAVYEWLRNRYGSPERIILYGQSIGTVPTVDLASR 150 (258)
T ss_pred chhhHHHHHHHHHhhcCCCceEEEEEecCCchhhhhHhhc
Confidence 4667778888888888 68899999999999975555443
No 142
>COG3150 Predicted esterase [General function prediction only]
Probab=91.47 E-value=0.45 Score=35.30 Aligned_cols=37 Identities=19% Similarity=0.150 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHH
Q 038038 57 AECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIV 93 (150)
Q Consensus 57 ~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~ 93 (150)
++.+.++++.+++.+-.+.|+|=||||-.|+-++..+
T Consensus 44 ~a~~ele~~i~~~~~~~p~ivGssLGGY~At~l~~~~ 80 (191)
T COG3150 44 QALKELEKAVQELGDESPLIVGSSLGGYYATWLGFLC 80 (191)
T ss_pred HHHHHHHHHHHHcCCCCceEEeecchHHHHHHHHHHh
Confidence 3556677778887766799999999999999888765
No 143
>PRK07868 acyl-CoA synthetase; Validated
Probab=91.03 E-value=0.77 Score=42.43 Aligned_cols=21 Identities=14% Similarity=0.061 Sum_probs=18.1
Q ss_pred ceEEEeeechhHHHHHHHHHH
Q 038038 72 YTLTFAGHSLGAGVVALLVLI 92 (150)
Q Consensus 72 ~~i~itGHSLGGalA~l~a~~ 92 (150)
.++.+.|||+||.+|..++..
T Consensus 141 ~~v~lvG~s~GG~~a~~~aa~ 161 (994)
T PRK07868 141 RDVHLVGYSQGGMFCYQAAAY 161 (994)
T ss_pred CceEEEEEChhHHHHHHHHHh
Confidence 479999999999999877764
No 144
>KOG3101 consensus Esterase D [General function prediction only]
Probab=90.94 E-value=0.095 Score=40.34 Aligned_cols=22 Identities=23% Similarity=0.301 Sum_probs=17.6
Q ss_pred CceEEEeeechhHHHHHHHHHH
Q 038038 71 NYTLTFAGHSLGAGVVALLVLI 92 (150)
Q Consensus 71 ~~~i~itGHSLGGalA~l~a~~ 92 (150)
..++-|+||||||.-|.+.++.
T Consensus 140 ~~k~~IfGHSMGGhGAl~~~Lk 161 (283)
T KOG3101|consen 140 PLKVGIFGHSMGGHGALTIYLK 161 (283)
T ss_pred chhcceeccccCCCceEEEEEc
Confidence 3569999999999988776653
No 145
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=90.93 E-value=0.69 Score=33.89 Aligned_cols=20 Identities=35% Similarity=0.348 Sum_probs=13.9
Q ss_pred CceEEEeeechhHHHHHHHHH
Q 038038 71 NYTLTFAGHSLGAGVVALLVL 91 (150)
Q Consensus 71 ~~~i~itGHSLGGalA~l~a~ 91 (150)
+..++++|||||.. +.+-.+
T Consensus 54 ~~~~ilVaHSLGc~-~~l~~l 73 (171)
T PF06821_consen 54 DEPTILVAHSLGCL-TALRWL 73 (171)
T ss_dssp TTTEEEEEETHHHH-HHHHHH
T ss_pred CCCeEEEEeCHHHH-HHHHHH
Confidence 44699999999954 444444
No 146
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=90.78 E-value=0.86 Score=34.42 Aligned_cols=22 Identities=27% Similarity=0.249 Sum_probs=20.4
Q ss_pred ceEEEeeechhHHHHHHHHHHH
Q 038038 72 YTLTFAGHSLGAGVVALLVLIV 93 (150)
Q Consensus 72 ~~i~itGHSLGGalA~l~a~~~ 93 (150)
.+|-|.|.|.||=+|.++|..+
T Consensus 22 ~~Igi~G~SkGaelALllAs~~ 43 (213)
T PF08840_consen 22 DKIGIIGISKGAELALLLASRF 43 (213)
T ss_dssp SSEEEEEETHHHHHHHHHHHHS
T ss_pred CCEEEEEECHHHHHHHHHHhcC
Confidence 5899999999999999999975
No 147
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=90.51 E-value=0.73 Score=38.50 Aligned_cols=40 Identities=18% Similarity=0.049 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHhhCC-CceEEEeeechhHHHHHHHHHH
Q 038038 53 WVFNAECEFLRGLVDRNP-NYTLTFAGHSLGAGVVALLVLI 92 (150)
Q Consensus 53 ~~~~~~~~~l~~~~~~~~-~~~i~itGHSLGGalA~l~a~~ 92 (150)
.+.+++.+.|++...... ..+..|.|+||||-.|..+++.
T Consensus 268 ~l~~eLlP~I~~~y~~~~d~~~~~IaG~S~GGl~AL~~al~ 308 (411)
T PRK10439 268 AVQQELLPQVRAIAPFSDDADRTVVAGQSFGGLAALYAGLH 308 (411)
T ss_pred HHHHHHHHHHHHhCCCCCCccceEEEEEChHHHHHHHHHHh
Confidence 344556666665432211 2467899999999988877775
No 148
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=90.33 E-value=0.6 Score=34.80 Aligned_cols=36 Identities=14% Similarity=0.073 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhhC--CCceEEEeeechhHHHHHHHHH
Q 038038 56 NAECEFLRGLVDRN--PNYTLTFAGHSLGAGVVALLVL 91 (150)
Q Consensus 56 ~~~~~~l~~~~~~~--~~~~i~itGHSLGGalA~l~a~ 91 (150)
+++..+++.+.++. ...+|-++|.|+||.+|..++.
T Consensus 80 ~~~~aa~~~l~~~~~~~~~kig~vGfc~GG~~a~~~a~ 117 (218)
T PF01738_consen 80 ADLQAAVDYLRAQPEVDPGKIGVVGFCWGGKLALLLAA 117 (218)
T ss_dssp HHHHHHHHHHHCTTTCEEEEEEEEEETHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhccccCCCcEEEEEEecchHHhhhhhh
Confidence 34555566555543 3579999999999998877654
No 149
>COG5023 Tubulin [Cytoskeleton]
Probab=90.28 E-value=0.39 Score=39.67 Aligned_cols=77 Identities=17% Similarity=0.210 Sum_probs=52.2
Q ss_pred eeeHhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHHHhcccccCCCCCCceEEEEecC-CCCCC
Q 038038 42 YVHNGSLKAARWVFNAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIVVQNLDKLGNIERNKIRCFAIAP-TKCMS 120 (150)
Q Consensus 42 ~vH~Gf~~~~~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~-P~v~~ 120 (150)
.--+|-|...+.+.+.+.+.|++..+.....+=+..=||+||+.++-++..|.+... ..+|+..+..|+--| |++.+
T Consensus 100 nwA~GhYtvG~e~~ddvmd~IrreAd~cD~LqGF~l~HS~gGGTGSG~GslLLerl~--~eypkK~~~tfSV~P~p~~Sd 177 (443)
T COG5023 100 NWARGHYTVGKEIIDDVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLR--EEYPKKIKLTFSVFPAPKVSD 177 (443)
T ss_pred cccccccchhHHHHHHHHHHHHHHhhcCccccceeeeeeccCcCcccHHHHHHHHHH--HhcchhheeEEEeccCCccCc
Confidence 344676777777888888888888776655556666799999988888887765421 124455566665555 66653
No 150
>KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism]
Probab=90.01 E-value=0.92 Score=34.92 Aligned_cols=38 Identities=29% Similarity=0.260 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhhCCC-ceEEEeeechhHHHHHHHHHHHH
Q 038038 57 AECEFLRGLVDRNPN-YTLTFAGHSLGAGVVALLVLIVV 94 (150)
Q Consensus 57 ~~~~~l~~~~~~~~~-~~i~itGHSLGGalA~l~a~~~~ 94 (150)
++..-++-+++.+++ ++|++-|||-|+.+|.=+-+..+
T Consensus 120 ~~~~gv~filk~~~n~k~l~~gGHSaGAHLa~qav~R~r 158 (270)
T KOG4627|consen 120 QFTHGVNFILKYTENTKVLTFGGHSAGAHLAAQAVMRQR 158 (270)
T ss_pred HHHHHHHHHHHhcccceeEEEcccchHHHHHHHHHHHhc
Confidence 344445555566665 46778889999999876666543
No 151
>COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only]
Probab=89.92 E-value=0.8 Score=36.12 Aligned_cols=29 Identities=17% Similarity=0.077 Sum_probs=23.5
Q ss_pred HHHHHHHHHhhCCCceEEEeeechhHHHH
Q 038038 58 ECEFLRGLVDRNPNYTLTFAGHSLGAGVV 86 (150)
Q Consensus 58 ~~~~l~~~~~~~~~~~i~itGHSLGGalA 86 (150)
++.+++++.+.|.-.++-.+|||+||.-.
T Consensus 122 lk~~msyL~~~Y~i~k~n~VGhSmGg~~~ 150 (288)
T COG4814 122 LKKAMSYLQKHYNIPKFNAVGHSMGGLGL 150 (288)
T ss_pred HHHHHHHHHHhcCCceeeeeeeccccHHH
Confidence 56777788888877789999999998643
No 152
>PRK15004 alpha-ribazole phosphatase; Provisional
Probab=89.82 E-value=0.97 Score=33.51 Aligned_cols=40 Identities=13% Similarity=0.092 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHH
Q 038038 52 RWVFNAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIV 93 (150)
Q Consensus 52 ~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~ 93 (150)
..+..++.+.++++.+++++.+|+|++| ||.+..++...+
T Consensus 122 ~~~~~Rv~~~l~~l~~~~~~~~iliVsH--g~~i~~l~~~~~ 161 (199)
T PRK15004 122 QAFSQRVERFIARLSAFQHYQNLLIVSH--QGVLSLLIARLL 161 (199)
T ss_pred HHHHHHHHHHHHHHHHhCCCCeEEEEcC--hHHHHHHHHHHh
Confidence 3456667788888887777789999999 888888887765
No 153
>TIGR03162 ribazole_cobC alpha-ribazole phosphatase. Members of this protein family include the known CobC protein of Salmonella and Eschichia coli species, and homologous proteins found in cobalamin biosynthesis regions in other bacteria. This protein is alpha-ribazole phosphatase (EC 3.1.3.73) and, like many phosphatases, can be closely related in sequence to other phosphatases with different functions. Close homologs excluded from this model include proteins with duplications, so this model is built in -g mode to suppress hits to those proteins.
Probab=89.77 E-value=1.4 Score=31.66 Aligned_cols=40 Identities=23% Similarity=0.343 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHH
Q 038038 52 RWVFNAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIV 93 (150)
Q Consensus 52 ~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~ 93 (150)
..+..++.+.++++.+++++.+|+|++| ||.+..++...+
T Consensus 118 ~~~~~R~~~~~~~l~~~~~~~~vlvVsH--g~~i~~l~~~~~ 157 (177)
T TIGR03162 118 ADFYQRVSEFLEELLKAHEGDNVLIVTH--GGVIRALLAHLL 157 (177)
T ss_pred HHHHHHHHHHHHHHHHhCCCCeEEEEEC--HHHHHHHHHHHh
Confidence 3446667788888877777789999999 888888877665
No 154
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=89.39 E-value=2.3 Score=34.63 Aligned_cols=67 Identities=22% Similarity=0.229 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHhhCC---CceEEEeeechhHHHHHHHHHHHHhcccccCCCCCCceEEEEecCCCCCC
Q 038038 53 WVFNAECEFLRGLVDRNP---NYTLTFAGHSLGAGVVALLVLIVVQNLDKLGNIERNKIRCFAIAPTKCMS 120 (150)
Q Consensus 53 ~~~~~~~~~l~~~~~~~~---~~~i~itGHSLGGalA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~P~v~~ 120 (150)
...+++..+|+....++| ...++|+|-|.||-.+..+|..+.+...... .+.-+++-+..|.|-+..
T Consensus 114 ~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i~~~~~~~~-~~~inLkGi~IGng~~dp 183 (415)
T PF00450_consen 114 QAAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYILQQNKKGD-QPKINLKGIAIGNGWIDP 183 (415)
T ss_dssp HHHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHHHHHTCC---STTSEEEEEEEESE-SBH
T ss_pred HHHHHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhhhhcccccc-ccccccccceecCccccc
Confidence 334556667777776665 4589999999999999999998876532210 124678889999887653
No 155
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=89.38 E-value=2.1 Score=33.91 Aligned_cols=50 Identities=16% Similarity=0.076 Sum_probs=30.6
Q ss_pred CCceEEEeeechhHHHHHHHHHHHHhcccccCCCCCCc--eEEEEecCCCCCCHHHHH
Q 038038 70 PNYTLTFAGHSLGAGVVALLVLIVVQNLDKLGNIERNK--IRCFAIAPTKCMSLNLAV 125 (150)
Q Consensus 70 ~~~~i~itGHSLGGalA~l~a~~~~~~~~~~g~~~~~~--i~~~tFg~P~v~~~~~a~ 125 (150)
++.++.+.|||-||. |++.+..+.... .|.-+ +.-..-+.|+.--.++..
T Consensus 69 ~~~~v~l~GySqGG~-Aa~~AA~l~~~Y-----ApeL~~~l~Gaa~gg~~~dl~~~~~ 120 (290)
T PF03583_consen 69 PSSRVALWGYSQGGQ-AALWAAELAPSY-----APELNRDLVGAAAGGPPADLAALLR 120 (290)
T ss_pred CCCCEEEEeeCccHH-HHHHHHHHhHHh-----CcccccceeEEeccCCccCHHHHHh
Confidence 457899999998866 666777665432 12224 665556666554344443
No 156
>PRK13463 phosphatase PhoE; Provisional
Probab=88.83 E-value=1.7 Score=32.44 Aligned_cols=40 Identities=15% Similarity=0.151 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHH
Q 038038 52 RWVFNAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIV 93 (150)
Q Consensus 52 ~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~ 93 (150)
..+..++.+.++++.+++++.+|+|++| ||.+-.+++..+
T Consensus 124 ~~~~~R~~~~l~~i~~~~~~~~vlvVsH--g~~ir~~~~~~~ 163 (203)
T PRK13463 124 EAVHKRVIEGMQLLLEKHKGESILIVSH--AAAAKLLVGHFA 163 (203)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEeC--hHHHHHHHHHHh
Confidence 3456667777888777777789999999 888888887765
No 157
>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=88.82 E-value=0.93 Score=36.03 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=19.8
Q ss_pred ceEEEeeechhHHHHHHHHHHHH
Q 038038 72 YTLTFAGHSLGAGVVALLVLIVV 94 (150)
Q Consensus 72 ~~i~itGHSLGGalA~l~a~~~~ 94 (150)
.++.+.|||.||-.|--+|+...
T Consensus 120 ~klal~GHSrGGktAFAlALg~a 142 (307)
T PF07224_consen 120 SKLALSGHSRGGKTAFALALGYA 142 (307)
T ss_pred ceEEEeecCCccHHHHHHHhccc
Confidence 58999999999998888888654
No 158
>KOG4372 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=88.50 E-value=0.33 Score=40.38 Aligned_cols=86 Identities=19% Similarity=0.196 Sum_probs=46.8
Q ss_pred CeEEEEEcCCCCCCccchhhcccCCCCCccCCC-ceeeHhHHHHHHHHHHH-------HHHHHHHHHhhCCCceEEEeee
Q 038038 8 TDIVLAIRGLNLAKEGGYAVLLDNKLGQTKLDG-GYVHNGSLKAARWVFNA-------ECEFLRGLVDRNPNYTLTFAGH 79 (150)
Q Consensus 8 ~~ivva~RGT~~~~d~~~~~~~d~~~~~~~~~~-~~vH~Gf~~~~~~~~~~-------~~~~l~~~~~~~~~~~i~itGH 79 (150)
+.+||-.+|-.+ .+..+ |+.-+.-.....++ ..+|+|+.+++-...+. .-+.+.+-...+.-.+|-++||
T Consensus 80 ~HLvVlthGi~~-~~~~~-~~~~~~~~~kk~p~~~iv~~g~~~~~~~T~~Gv~~lG~Rla~~~~e~~~~~si~kISfvgh 157 (405)
T KOG4372|consen 80 KHLVVLTHGLHG-ADMEY-WKEKIEQMTKKMPDKLIVVRGKMNNMCQTFDGVDVLGERLAEEVKETLYDYSIEKISFVGH 157 (405)
T ss_pred ceEEEecccccc-ccHHH-HHHHHHhhhcCCCcceEeeeccccchhhccccceeeecccHHHHhhhhhccccceeeeeee
Confidence 567788888776 22111 11111111112222 68999998776554433 1222222221222358999999
Q ss_pred chhHHHHHHHHHHHHh
Q 038038 80 SLGAGVVALLVLIVVQ 95 (150)
Q Consensus 80 SLGGalA~l~a~~~~~ 95 (150)
||||=+|..+--++..
T Consensus 158 SLGGLvar~AIgyly~ 173 (405)
T KOG4372|consen 158 SLGGLVARYAIGYLYE 173 (405)
T ss_pred ecCCeeeeEEEEeecc
Confidence 9999888776666544
No 159
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=88.28 E-value=0.86 Score=35.95 Aligned_cols=33 Identities=24% Similarity=0.299 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhhCCCceEEEeeechhHHHHHH
Q 038038 55 FNAECEFLRGLVDRNPNYTLTFAGHSLGAGVVAL 88 (150)
Q Consensus 55 ~~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l 88 (150)
.+++++.|++-....++ +-.+.||||||-++.-
T Consensus 121 ~~~lkP~Ie~~y~~~~~-~~~i~GhSlGGLfvl~ 153 (264)
T COG2819 121 TEQLKPFIEARYRTNSE-RTAIIGHSLGGLFVLF 153 (264)
T ss_pred HHhhHHHHhcccccCcc-cceeeeecchhHHHHH
Confidence 45677777765544443 3778899999875443
No 160
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=88.24 E-value=0.74 Score=36.22 Aligned_cols=25 Identities=36% Similarity=0.573 Sum_probs=21.3
Q ss_pred CCc-eEEEeeechhHHHHHHHHHHHH
Q 038038 70 PNY-TLTFAGHSLGAGVVALLVLIVV 94 (150)
Q Consensus 70 ~~~-~i~itGHSLGGalA~l~a~~~~ 94 (150)
+|. +|-+.|||.||-+|..+++...
T Consensus 88 ~D~s~l~l~GHSrGGk~Af~~al~~~ 113 (259)
T PF12740_consen 88 PDFSKLALAGHSRGGKVAFAMALGNA 113 (259)
T ss_pred ccccceEEeeeCCCCHHHHHHHhhhc
Confidence 344 8999999999999998888764
No 161
>PRK03482 phosphoglycerate mutase; Provisional
Probab=87.43 E-value=1.9 Score=32.23 Aligned_cols=42 Identities=12% Similarity=0.120 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHH
Q 038038 50 AARWVFNAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIV 93 (150)
Q Consensus 50 ~~~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~ 93 (150)
+...+..++.+.++++.+.+++.+|+|++| ||.+..+++..+
T Consensus 121 s~~~~~~Rv~~~l~~~~~~~~~~~vliVsH--g~~i~~l~~~l~ 162 (215)
T PRK03482 121 SMQELSDRMHAALESCLELPQGSRPLLVSH--GIALGCLVSTIL 162 (215)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCeEEEEeC--cHHHHHHHHHHh
Confidence 334456667778887776666678999999 888888887766
No 162
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=87.32 E-value=0.13 Score=39.74 Aligned_cols=38 Identities=24% Similarity=0.217 Sum_probs=28.7
Q ss_pred HHHHHHHHHhh--CCCceEEEeeechhHHHHHHHHHHHHh
Q 038038 58 ECEFLRGLVDR--NPNYTLTFAGHSLGAGVVALLVLIVVQ 95 (150)
Q Consensus 58 ~~~~l~~~~~~--~~~~~i~itGHSLGGalA~l~a~~~~~ 95 (150)
.+..|+.++.. ....+|++-|.|||||+|.-+|.....
T Consensus 133 s~avldyl~t~~~~dktkivlfGrSlGGAvai~lask~~~ 172 (300)
T KOG4391|consen 133 SEAVLDYLMTRPDLDKTKIVLFGRSLGGAVAIHLASKNSD 172 (300)
T ss_pred HHHHHHHHhcCccCCcceEEEEecccCCeeEEEeeccchh
Confidence 45566666654 346799999999999999988886644
No 163
>PRK14119 gpmA phosphoglyceromutase; Provisional
Probab=87.05 E-value=1.7 Score=33.07 Aligned_cols=43 Identities=14% Similarity=0.213 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhC--CCceEEEeeechhHHHHHHHHHHH
Q 038038 49 KAARWVFNAECEFLRGLVDRN--PNYTLTFAGHSLGAGVVALLVLIV 93 (150)
Q Consensus 49 ~~~~~~~~~~~~~l~~~~~~~--~~~~i~itGHSLGGalA~l~a~~~ 93 (150)
.+...+.+++.+.++++..++ ++.+|+|++| ||.+-.+++..+
T Consensus 150 ES~~~~~~Rv~~~l~~~~~~~~~~~~~vlvVsH--g~vir~l~~~~~ 194 (228)
T PRK14119 150 ESLKDTLVRVIPFWTDHISQYLLDGQTVLVSAH--GNSIRALIKYLE 194 (228)
T ss_pred CCHHHHHHHHHHHHHHHHHhhccCCCeEEEEeC--hHHHHHHHHHHh
Confidence 334455677778888776554 6678999999 999998888765
No 164
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=86.87 E-value=1.4 Score=33.02 Aligned_cols=64 Identities=17% Similarity=0.106 Sum_probs=30.8
Q ss_pred EEEeeechhHHHHHHHHHHHHhcccccCCCCCCceE-EEEecCCCCCCHHHHHhc-CCc----eeEEEeCCcc
Q 038038 74 LTFAGHSLGAGVVALLVLIVVQNLDKLGNIERNKIR-CFAIAPTKCMSLNLAVRY-EWI----VNGCERKGKT 140 (150)
Q Consensus 74 i~itGHSLGGalA~l~a~~~~~~~~~~g~~~~~~i~-~~tFg~P~v~~~~~a~~~-~~~----i~~iv~~~D~ 140 (150)
.-|.|.|.||++|.++.......... + ..+.++ ++.++.+...+.+....+ ... ..+|+=.+|.
T Consensus 104 dGvlGFSQGA~lAa~ll~~~~~~~~~-~--~~~~~kf~V~~sg~~p~~~~~~~~~~~~~i~iPtlHv~G~~D~ 173 (212)
T PF03959_consen 104 DGVLGFSQGAALAALLLALQQRGRPD-G--AHPPFKFAVFISGFPPPDPDYQELYDEPKISIPTLHVIGENDP 173 (212)
T ss_dssp SEEEEETHHHHHHHHHHHHHHHHST-----T----SEEEEES----EEE-GTTTT--TT---EEEEEEETT-S
T ss_pred EEEEeecHHHHHHHHHHHHHHhhccc-c--cCCCceEEEEEcccCCCchhhhhhhccccCCCCeEEEEeCCCC
Confidence 44679999999999998876543210 0 113344 455566555544433333 122 2366666664
No 165
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=86.57 E-value=0.88 Score=39.90 Aligned_cols=38 Identities=13% Similarity=0.114 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhhCC---CceEEEeeechhHHHHHHHHHHH
Q 038038 55 FNAECEFLRGLVDRNP---NYTLTFAGHSLGAGVVALLVLIV 93 (150)
Q Consensus 55 ~~~~~~~l~~~~~~~~---~~~i~itGHSLGGalA~l~a~~~ 93 (150)
++++.+.++ +++++| ..+|-|+|||.||-++.+++...
T Consensus 454 ~~D~~~~~~-~l~~~~~~d~~ri~i~G~SyGGymtl~~~~~~ 494 (620)
T COG1506 454 LEDLIAAVD-ALVKLPLVDPERIGITGGSYGGYMTLLAATKT 494 (620)
T ss_pred HHHHHHHHH-HHHhCCCcChHHeEEeccChHHHHHHHHHhcC
Confidence 456777777 556554 35899999999999887777653
No 166
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=86.50 E-value=1 Score=37.94 Aligned_cols=53 Identities=15% Similarity=0.197 Sum_probs=38.1
Q ss_pred eeHhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHHHh
Q 038038 43 VHNGSLKAARWVFNAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIVVQ 95 (150)
Q Consensus 43 vH~Gf~~~~~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~~~ 95 (150)
--.|++.....+.+++.+.|++..++.....=+++=|||||+.++-++..+.+
T Consensus 102 wa~Gy~~~G~~~~~~i~d~ir~~~E~cD~l~gf~i~~sl~GGTGSGlgs~l~e 154 (434)
T cd02186 102 FARGHYTIGKEIIDLVLDRIRKLADNCTGLQGFLIFHSFGGGTGSGFGSLLLE 154 (434)
T ss_pred cccccchhHHHHHHHHHHHHHHHHhcCCCcceeEEEeccCCCcchhHHHHHHH
Confidence 34577766666777788888888887655555666799999877766666654
No 167
>PRK13462 acid phosphatase; Provisional
Probab=86.44 E-value=2.1 Score=32.08 Aligned_cols=43 Identities=14% Similarity=0.064 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHHH
Q 038038 50 AARWVFNAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIVV 94 (150)
Q Consensus 50 ~~~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~~ 94 (150)
++..+..++.+.++++.+++++.+|++++| ||.+-.+++..+-
T Consensus 118 S~~~~~~Rv~~~l~~i~~~~~~~~vliVsH--g~vir~ll~~~l~ 160 (203)
T PRK13462 118 SVAQVNERADRAVALALEHMESRDVVFVSH--GHFSRAVITRWVE 160 (203)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCCEEEEeC--CHHHHHHHHHHhC
Confidence 445566778888888888788788999999 6787777776653
No 168
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=86.28 E-value=1.7 Score=36.58 Aligned_cols=50 Identities=12% Similarity=0.062 Sum_probs=36.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHHHh
Q 038038 45 NGSLKAARWVFNAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIVVQ 95 (150)
Q Consensus 45 ~Gf~~~~~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~~~ 95 (150)
.|+. ......+.+.+.|++..++.....=+++=|||||+.++-++..+.+
T Consensus 104 ~Gy~-~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~SlgGGTGSG~gs~l~e 153 (431)
T cd02188 104 SGYS-QGEEVQEEILDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLE 153 (431)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHhcCCCcceeEEEecCCCCcchhHHHHHHH
Confidence 4654 3566677788888888887766677777899999777666666544
No 169
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=86.00 E-value=0.4 Score=37.42 Aligned_cols=33 Identities=33% Similarity=0.394 Sum_probs=21.4
Q ss_pred HHHHHHHHHhhCCCceEEEeeechhHHHHHHHH
Q 038038 58 ECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLV 90 (150)
Q Consensus 58 ~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a 90 (150)
+-..|..+.+.-|+...+++|||+||.+--|++
T Consensus 91 ~~aal~~~~~~~~~~P~y~vgHS~GGqa~gL~~ 123 (281)
T COG4757 91 FPAALAALKKALPGHPLYFVGHSFGGQALGLLG 123 (281)
T ss_pred hHHHHHHHHhhCCCCceEEeeccccceeecccc
Confidence 444444444434556699999999998655544
No 170
>TIGR03848 MSMEG_4193 probable phosphomutase, MSMEG_4193 family. A three-gene system broadly conserved among the Actinobacteria includes MSMEG_4193 and homologs, a subgroup among the larger phosphoglycerate mutase family protein (pfam00300). Another member of the trio is a probable kinase, related to phosphatidylinositol kinases; that context supports the hypothesis that this protein acts as a phosphomutase.
Probab=85.96 E-value=2.3 Score=31.56 Aligned_cols=40 Identities=18% Similarity=0.145 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHhh-----CCCceEEEeeechhHHHHHHHHHHHH
Q 038038 53 WVFNAECEFLRGLVDR-----NPNYTLTFAGHSLGAGVVALLVLIVV 94 (150)
Q Consensus 53 ~~~~~~~~~l~~~~~~-----~~~~~i~itGHSLGGalA~l~a~~~~ 94 (150)
.+..++.+.++++.++ +++..++|++| ||.+..+++..+-
T Consensus 121 ~~~~R~~~~l~~~~~~~~~~~~~~~~vliVsH--g~~ir~ll~~~lg 165 (204)
T TIGR03848 121 QVQARAVAAVREHDARLAAEHGPDAVWVACSH--GDVIKSVLADALG 165 (204)
T ss_pred HHHHHHHHHHHHHHHHhhhccCCCCEEEEEeC--ChHHHHHHHHHhC
Confidence 3455566666666544 35668999999 8999888877653
No 171
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=85.93 E-value=1.5 Score=35.31 Aligned_cols=35 Identities=17% Similarity=0.102 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhCC--CceEEEeeechhHHHHHHHHHH
Q 038038 58 ECEFLRGLVDRNP--NYTLTFAGHSLGAGVVALLVLI 92 (150)
Q Consensus 58 ~~~~l~~~~~~~~--~~~i~itGHSLGGalA~l~a~~ 92 (150)
+++.+..+..++. ..+|++||-|=||.||..++..
T Consensus 128 lr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~~lac~ 164 (312)
T COG3509 128 LRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACE 164 (312)
T ss_pred HHHHHHHHHHhcCcCcceEEEEeeCcHHHHHHHHHhc
Confidence 6677888888873 4599999999999999988875
No 172
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=85.29 E-value=1.4 Score=37.31 Aligned_cols=52 Identities=17% Similarity=0.125 Sum_probs=39.9
Q ss_pred eHhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHHHh
Q 038038 44 HNGSLKAARWVFNAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIVVQ 95 (150)
Q Consensus 44 H~Gf~~~~~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~~~ 95 (150)
-.||+.....+.+++.+.|++..++.....-++.=||+||+.++-++..+.+
T Consensus 98 a~Gy~~~g~~~~~~~~d~ir~~~E~cd~~~gf~~~~sl~GGtGSG~gs~l~e 149 (446)
T cd02189 98 AYGYYVHGPQIKEDILDLIRKEVEKCDSFEGFLVLHSLAGGTGSGLGSRVTE 149 (446)
T ss_pred hccccccchhhHHHHHHHHHHHHHhCCCccceEEEecCCCCcchHHHHHHHH
Confidence 3466665566778888888888888777778888999999877766666654
No 173
>PLN02633 palmitoyl protein thioesterase family protein
Probab=84.79 E-value=2.5 Score=34.13 Aligned_cols=66 Identities=15% Similarity=0.141 Sum_probs=39.2
Q ss_pred eeHhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHHHhcccccCCCCCCce-EEEEecCCCCC
Q 038038 43 VHNGSLKAARWVFNAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIVVQNLDKLGNIERNKI-RCFAIAPTKCM 119 (150)
Q Consensus 43 vH~Gf~~~~~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~~~~~~~~g~~~~~~i-~~~tFg~P~v~ 119 (150)
..+||+.-.....+.+.+.|.+ .++.++ -+-+.|||.||-++--+.-.+-.. ++| ..++||+|--|
T Consensus 67 ~~~s~~~~~~~Qve~vce~l~~-~~~l~~-G~naIGfSQGGlflRa~ierc~~~---------p~V~nlISlggph~G 133 (314)
T PLN02633 67 VGDSWLMPLTQQAEIACEKVKQ-MKELSQ-GYNIVGRSQGNLVARGLIEFCDGG---------PPVYNYISLAGPHAG 133 (314)
T ss_pred ccccceeCHHHHHHHHHHHHhh-chhhhC-cEEEEEEccchHHHHHHHHHCCCC---------CCcceEEEecCCCCC
Confidence 5677765543333334444444 223332 488889999999877666655221 334 37888886655
No 174
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=84.75 E-value=2.4 Score=39.76 Aligned_cols=28 Identities=18% Similarity=0.230 Sum_probs=23.1
Q ss_pred CCCceEEEeeechhHHHHHHHHHHHHhc
Q 038038 69 NPNYTLTFAGHSLGAGVVALLVLIVVQN 96 (150)
Q Consensus 69 ~~~~~i~itGHSLGGalA~l~a~~~~~~ 96 (150)
.++.+..+.|||+||.+|.-++..+...
T Consensus 1130 ~~~~p~~l~G~S~Gg~vA~e~A~~l~~~ 1157 (1296)
T PRK10252 1130 QPHGPYHLLGYSLGGTLAQGIAARLRAR 1157 (1296)
T ss_pred CCCCCEEEEEechhhHHHHHHHHHHHHc
Confidence 3555799999999999999999887553
No 175
>PF00300 His_Phos_1: Histidine phosphatase superfamily (branch 1); InterPro: IPR013078 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members. Phosphoglycerate mutase (5.4.2.1 from EC) (PGAM) and bisphosphoglycerate mutase (5.4.2.4 from EC) (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate [, , ]. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase 3.1.3.13 from EC activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein. BPGM is a dimeric protein and is found mainly in erythrocytes where it plays a major role in regulating haemoglobin oxygen affinity as a consequence of controlling 2,3-DPG concentration. The catalytic mechanism of both PGAM and BPGM involves the formation of a phosphohistidine intermediate []. A number of other proteins including, the bifunctional enzyme 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase [] that catalyses both the synthesis and the degradation of fructose-2,6-bisphosphate and bacterial alpha-ribazole-5'-phosphate phosphatase, which is involved in cobalamin biosynthesis, contain this domain [].; PDB: 1C80_A 1C7Z_B 1TIP_B 1C81_A 1FBT_A 1RII_B 3OI7_B 3LL4_A 3LG2_B 3F3K_B ....
Probab=84.22 E-value=3.3 Score=28.61 Aligned_cols=37 Identities=22% Similarity=0.274 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHh-hCCCceEEEeeechhHHHHHH
Q 038038 50 AARWVFNAECEFLRGLVD-RNPNYTLTFAGHSLGAGVVAL 88 (150)
Q Consensus 50 ~~~~~~~~~~~~l~~~~~-~~~~~~i~itGHSLGGalA~l 88 (150)
+...+..++...++++.+ ..++..|+|++| ||.+..+
T Consensus 121 s~~~~~~R~~~~~~~l~~~~~~~~~vliVsH--g~~i~~~ 158 (158)
T PF00300_consen 121 SWEDFQQRVKQFLDELIAYKRPGENVLIVSH--GGFIRAL 158 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSEEEEEE---HHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCCEEEEEec--HHHHHhC
Confidence 334456667777777775 567789999999 7776543
No 176
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=84.18 E-value=1.3 Score=36.46 Aligned_cols=56 Identities=18% Similarity=0.175 Sum_probs=38.6
Q ss_pred CceeeHhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHHHh
Q 038038 40 GGYVHNGSLKAARWVFNAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIVVQ 95 (150)
Q Consensus 40 ~~~vH~Gf~~~~~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~~~ 95 (150)
|+.-..|++.......+++.+.|++.+++.....-++.=|||||+..+-++..+.+
T Consensus 57 gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~l~gf~i~~sl~GGTGSG~gs~l~e 112 (382)
T cd06059 57 GNNWARGYYTIGPELIDEILDRIRKQVEKCDSLQGFQITHSLGGGTGSGLGSLLLE 112 (382)
T ss_pred cccccccccccCHHHHHHHHHHHHHHHHhCCCcCceEEEEecCCCcchhHHHHHHH
Confidence 34455666655556677788888888887765556677899999776666665544
No 177
>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=83.93 E-value=3.3 Score=32.45 Aligned_cols=90 Identities=26% Similarity=0.335 Sum_probs=50.0
Q ss_pred CcccCCCCeEEEEEcCCCCCCccc---hhh----cccCCCC--CccCCCceeeHhHHHHHHHHHHHHHHHHHHHHhhC--
Q 038038 1 WVVLQKKTDIVLAIRGLNLAKEGG---YAV----LLDNKLG--QTKLDGGYVHNGSLKAARWVFNAECEFLRGLVDRN-- 69 (150)
Q Consensus 1 ~~~d~~~~~ivva~RGT~~~~d~~---~~~----~~d~~~~--~~~~~~~~vH~Gf~~~~~~~~~~~~~~l~~~~~~~-- 69 (150)
|+.=+++..=||-|=|-....... +.. +.+..+. ..++..+.-|... |+.++++...+++.+.+..
T Consensus 9 wvl~P~~P~gvihFiGGaf~ga~P~itYr~lLe~La~~Gy~ViAtPy~~tfDH~~~---A~~~~~~f~~~~~~L~~~~~~ 85 (250)
T PF07082_consen 9 WVLIPPRPKGVIHFIGGAFVGAAPQITYRYLLERLADRGYAVIATPYVVTFDHQAI---AREVWERFERCLRALQKRGGL 85 (250)
T ss_pred EEEeCCCCCEEEEEcCcceeccCcHHHHHHHHHHHHhCCcEEEEEecCCCCcHHHH---HHHHHHHHHHHHHHHHHhcCC
Confidence 666677777788777765433211 111 2222221 1123445667544 4455555555555555432
Q ss_pred -C-CceEEEeeechhHHHHHHHHHHH
Q 038038 70 -P-NYTLTFAGHSLGAGVVALLVLIV 93 (150)
Q Consensus 70 -~-~~~i~itGHSLGGalA~l~a~~~ 93 (150)
+ ...++=.|||||.=+=.|+....
T Consensus 86 ~~~~lP~~~vGHSlGcklhlLi~s~~ 111 (250)
T PF07082_consen 86 DPAYLPVYGVGHSLGCKLHLLIGSLF 111 (250)
T ss_pred CcccCCeeeeecccchHHHHHHhhhc
Confidence 1 23577789999988888877655
No 178
>KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism]
Probab=83.70 E-value=0.45 Score=38.69 Aligned_cols=20 Identities=20% Similarity=0.218 Sum_probs=16.1
Q ss_pred ceEEEeeechhHHHHHHHHH
Q 038038 72 YTLTFAGHSLGAGVVALLVL 91 (150)
Q Consensus 72 ~~i~itGHSLGGalA~l~a~ 91 (150)
.++.+.|||.|||.+.....
T Consensus 241 s~~aViGHSFGgAT~i~~ss 260 (399)
T KOG3847|consen 241 SQAAVIGHSFGGATSIASSS 260 (399)
T ss_pred hhhhheeccccchhhhhhhc
Confidence 46889999999997766554
No 179
>PTZ00335 tubulin alpha chain; Provisional
Probab=83.70 E-value=1.1 Score=37.89 Aligned_cols=54 Identities=15% Similarity=0.182 Sum_probs=38.0
Q ss_pred eeeHhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHHHh
Q 038038 42 YVHNGSLKAARWVFNAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIVVQ 95 (150)
Q Consensus 42 ~vH~Gf~~~~~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~~~ 95 (150)
.--.|++.....+.+++.+.|++..++.....=++.=|||||+.++-++..+.+
T Consensus 102 nwa~Gy~~~G~~~~d~i~d~ir~~~E~cD~l~gf~i~~Sl~GGTGSGlgs~l~e 155 (448)
T PTZ00335 102 NFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLE 155 (448)
T ss_pred cccccccchhhhHhHHHHHHHHHhHHhccCccceeEeeccCCCccchHHHHHHH
Confidence 344577766666777888888888887654445566799999877777766654
No 180
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=83.16 E-value=3.2 Score=31.89 Aligned_cols=39 Identities=15% Similarity=0.159 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhhC--CCceEEEeeechhHHHHHHHHHHH
Q 038038 55 FNAECEFLRGLVDRN--PNYTLTFAGHSLGAGVVALLVLIV 93 (150)
Q Consensus 55 ~~~~~~~l~~~~~~~--~~~~i~itGHSLGGalA~l~a~~~ 93 (150)
..++...++.+.++. ...+|-++|-|+||.+|.+++...
T Consensus 93 ~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~ 133 (236)
T COG0412 93 LADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRA 133 (236)
T ss_pred HHHHHHHHHHHHhCCCCCCceEEEEEEcccHHHHHHhhccc
Confidence 444666666665443 256899999999999998888764
No 181
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=82.76 E-value=1.5 Score=36.20 Aligned_cols=52 Identities=21% Similarity=0.183 Sum_probs=36.1
Q ss_pred eHhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHHHh
Q 038038 44 HNGSLKAARWVFNAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIVVQ 95 (150)
Q Consensus 44 H~Gf~~~~~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~~~ 95 (150)
-.|++.......+++.+.|++..++.....-++.=|||||+.++-++..+.+
T Consensus 71 a~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~i~~sl~GGTGSG~gs~l~e 122 (379)
T cd02190 71 AVGYHQYGHQYIDSILEKIRKAAEKCDSLQSFFILHSLGGGTGSGLGTYVLE 122 (379)
T ss_pred cceeeccchhHHHHHHHHHHHHHhhCcCcceEEEEeecCCCcchhHHHHHHH
Confidence 4456554455667778888888887665556777899999776666666544
No 182
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=82.32 E-value=3.1 Score=33.40 Aligned_cols=50 Identities=20% Similarity=0.147 Sum_probs=33.3
Q ss_pred eHhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHH
Q 038038 44 HNGSLKAARWVFNAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIV 93 (150)
Q Consensus 44 H~Gf~~~~~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~ 93 (150)
-.|++.+.....+.+.+.|++..|+......++.=|||||+-.+-++..+
T Consensus 61 ~~G~~~~~~~~~e~i~~~ir~~~E~cD~~~gf~i~~slgGGTGsG~~~~i 110 (328)
T cd00286 61 AFGHETAGEEYQEEILDIIRKEAEECDSLQGFFITHSLGGGTGSGLGPVL 110 (328)
T ss_pred ceeeccccHHHHHHHHHHHHHHHHhCCCccceEEEeecCCCccccHHHHH
Confidence 34555444445667778888888877767788889999985544444433
No 183
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=82.27 E-value=3.3 Score=34.64 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=19.1
Q ss_pred ceEEEeeechhHHHHHHHHHHH
Q 038038 72 YTLTFAGHSLGAGVVALLVLIV 93 (150)
Q Consensus 72 ~~i~itGHSLGGalA~l~a~~~ 93 (150)
.+++..|||-||-+|.|+|-..
T Consensus 184 lp~I~~G~s~G~yla~l~~k~a 205 (403)
T PF11144_consen 184 LPKIYIGSSHGGYLAHLCAKIA 205 (403)
T ss_pred CcEEEEecCcHHHHHHHHHhhC
Confidence 5788889999999999998753
No 184
>PLN00220 tubulin beta chain; Provisional
Probab=82.22 E-value=1.1 Score=37.81 Aligned_cols=52 Identities=13% Similarity=0.151 Sum_probs=37.6
Q ss_pred eHhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHHHh
Q 038038 44 HNGSLKAARWVFNAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIVVQ 95 (150)
Q Consensus 44 H~Gf~~~~~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~~~ 95 (150)
-.|++.....+.+++.+.|++..++.....=+++=|||||+.++-++..+.+
T Consensus 102 a~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~~~~sl~GGTGSG~gs~l~~ 153 (447)
T PLN00220 102 AKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLIS 153 (447)
T ss_pred CceeecccHHHHHHHHHHHHHHHHhCcCcCceEEEEecCCCccccHHHHHHH
Confidence 4566665566677788888888887655566777899999887766665543
No 185
>COG0400 Predicted esterase [General function prediction only]
Probab=82.17 E-value=3.3 Score=31.39 Aligned_cols=37 Identities=27% Similarity=0.372 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhhC--CCceEEEeeechhHHHHHHHHHHH
Q 038038 57 AECEFLRGLVDRN--PNYTLTFAGHSLGAGVVALLVLIV 93 (150)
Q Consensus 57 ~~~~~l~~~~~~~--~~~~i~itGHSLGGalA~l~a~~~ 93 (150)
.+.++++.+.+++ +..++++.|.|-||++|.-+.+..
T Consensus 82 ~~~~~l~~~~~~~gi~~~~ii~~GfSqGA~ial~~~l~~ 120 (207)
T COG0400 82 KLAEFLEELAEEYGIDSSRIILIGFSQGANIALSLGLTL 120 (207)
T ss_pred HHHHHHHHHHHHhCCChhheEEEecChHHHHHHHHHHhC
Confidence 4667777777766 346999999999999887666543
No 186
>KOG2029 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.06 E-value=14 Score=32.70 Aligned_cols=50 Identities=18% Similarity=0.254 Sum_probs=29.0
Q ss_pred CceEEEeeechhHHHHHHHHHHHHhc-ccccCCCCCCceEEEEecCCCCCC
Q 038038 71 NYTLTFAGHSLGAGVVALLVLIVVQN-LDKLGNIERNKIRCFAIAPTKCMS 120 (150)
Q Consensus 71 ~~~i~itGHSLGGalA~l~a~~~~~~-~~~~g~~~~~~i~~~tFg~P~v~~ 120 (150)
+-.|+-.|||+||-+|-.+-+....+ ++...+...+-..|+=++.|--|+
T Consensus 525 ~RPivwI~HSmGGLl~K~lLlda~~S~kP~ms~l~kNtrGiiFls~PHrGS 575 (697)
T KOG2029|consen 525 DRPIVWIGHSMGGLLAKKLLLDAYCSSKPDMSNLNKNTRGIIFLSVPHRGS 575 (697)
T ss_pred CCceEEEecccchHHHHHHHHHHhhcCCchhhhhhccCCceEEEecCCCCC
Confidence 45688889999997766555544311 111111223344577777776664
No 187
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=81.89 E-value=4.3 Score=33.78 Aligned_cols=22 Identities=18% Similarity=0.160 Sum_probs=19.3
Q ss_pred CceEEEeeechhHHHHHHHHHH
Q 038038 71 NYTLTFAGHSLGAGVVALLVLI 92 (150)
Q Consensus 71 ~~~i~itGHSLGGalA~l~a~~ 92 (150)
..+|-++|+|+||..+-+++..
T Consensus 225 ~~RIG~~GfSmGg~~a~~LaAL 246 (390)
T PF12715_consen 225 PDRIGCMGFSMGGYRAWWLAAL 246 (390)
T ss_dssp EEEEEEEEEGGGHHHHHHHHHH
T ss_pred ccceEEEeecccHHHHHHHHHc
Confidence 4699999999999998888874
No 188
>PLN02209 serine carboxypeptidase
Probab=81.88 E-value=5.2 Score=33.80 Aligned_cols=62 Identities=15% Similarity=0.155 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhhCCC---ceEEEeeechhHHHHHHHHHHHHhcccccCCCCCCceEEEEecCCCC
Q 038038 56 NAECEFLRGLVDRNPN---YTLTFAGHSLGAGVVALLVLIVVQNLDKLGNIERNKIRCFAIAPTKC 118 (150)
Q Consensus 56 ~~~~~~l~~~~~~~~~---~~i~itGHSLGGalA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~P~v 118 (150)
+++..+|+..++.+|+ ..++|+|.|.||..+..+|..+.+...+ +.-+.-+++-+..|.|-+
T Consensus 148 ~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~~a~~i~~~~~~-~~~~~inl~Gi~igng~t 212 (437)
T PLN02209 148 KKIHEFLQKWLIKHPQFLSNPFYVVGDSYSGMIVPALVHEISKGNYI-CCNPPINLQGYVLGNPIT 212 (437)
T ss_pred HHHHHHHHHHHHhCccccCCCEEEEecCcCceehHHHHHHHHhhccc-ccCCceeeeeEEecCccc
Confidence 4566677777777664 4799999999999888888888653211 101234677777777744
No 189
>PLN00222 tubulin gamma chain; Provisional
Probab=81.64 E-value=2.9 Score=35.44 Aligned_cols=51 Identities=12% Similarity=0.064 Sum_probs=36.8
Q ss_pred eHhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHHHh
Q 038038 44 HNGSLKAARWVFNAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIVVQ 95 (150)
Q Consensus 44 H~Gf~~~~~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~~~ 95 (150)
-.|+. ......+.+.+.|++..+......-++.=||+||+.++-++..+.+
T Consensus 105 a~Gy~-~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~sl~GGTGSGlgs~lle 155 (454)
T PLN00222 105 ASGYH-QGEQVEEDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLE 155 (454)
T ss_pred HHhHH-HHHHHHHHHHHHHHHHHHhCCCccceEEeecCCCCccchHHHHHHH
Confidence 35655 4566677788888888887666667777899999876666666554
No 190
>PTZ00123 phosphoglycerate mutase like-protein; Provisional
Probab=81.33 E-value=5.8 Score=30.41 Aligned_cols=42 Identities=12% Similarity=0.114 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHhh--CCCceEEEeeechhHHHHHHHHHHHH
Q 038038 51 ARWVFNAECEFLRGLVDR--NPNYTLTFAGHSLGAGVVALLVLIVV 94 (150)
Q Consensus 51 ~~~~~~~~~~~l~~~~~~--~~~~~i~itGHSLGGalA~l~a~~~~ 94 (150)
+..+.+++.+.++++..+ .++.+|+|++| ||.+..++...+.
T Consensus 139 ~~~~~~Rv~~~l~~li~~~~~~~~~vliVsH--G~vir~ll~~l~~ 182 (236)
T PTZ00123 139 LKDTVERVLPYWEDHIAPDILAGKKVLVAAH--GNSLRALVKYLDK 182 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC--HHHHHHHHHHHhC
Confidence 344566677777775432 35678999999 9999999988764
No 191
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=81.05 E-value=2.8 Score=33.51 Aligned_cols=34 Identities=29% Similarity=0.386 Sum_probs=24.4
Q ss_pred HHHHHHHhhC-CCceEEEeeechhHHHHHHHHHHH
Q 038038 60 EFLRGLVDRN-PNYTLTFAGHSLGAGVVALLVLIV 93 (150)
Q Consensus 60 ~~l~~~~~~~-~~~~i~itGHSLGGalA~l~a~~~ 93 (150)
..++.++++- -+.++.+.|||.|+..|.-++...
T Consensus 91 ~~~~~ll~~l~i~~~~i~~gHSrGcenal~la~~~ 125 (297)
T PF06342_consen 91 NFVNALLDELGIKGKLIFLGHSRGCENALQLAVTH 125 (297)
T ss_pred HHHHHHHHHcCCCCceEEEEeccchHHHHHHHhcC
Confidence 3444444432 346899999999999998888865
No 192
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=80.84 E-value=1.9 Score=36.17 Aligned_cols=51 Identities=14% Similarity=0.154 Sum_probs=35.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHHHh
Q 038038 45 NGSLKAARWVFNAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIVVQ 95 (150)
Q Consensus 45 ~Gf~~~~~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~~~ 95 (150)
.|++.....+.+++.+.|++..++.....=+++=|||||+.++-++..+.+
T Consensus 102 ~G~~~~G~~~~e~i~d~ir~~~E~cD~l~gf~~~~sl~GGTGSG~gs~l~e 152 (425)
T cd02187 102 KGHYTEGAELIDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLIS 152 (425)
T ss_pred ccchhhcHHHHHHHHHHHHHhhccCCCcceEEEEeecCCCccccHHHHHHH
Confidence 577766666777788888888877655555666799998766555555443
No 193
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=80.64 E-value=4.6 Score=30.37 Aligned_cols=39 Identities=18% Similarity=0.209 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHHH
Q 038038 56 NAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIVV 94 (150)
Q Consensus 56 ~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~~ 94 (150)
..+...++...++....+++++|.|.|+-+...+.-.|-
T Consensus 52 ~Dl~~~i~~y~~~w~~~~vvLiGYSFGADvlP~~~nrLp 90 (192)
T PF06057_consen 52 ADLARIIRHYRARWGRKRVVLIGYSFGADVLPFIYNRLP 90 (192)
T ss_pred HHHHHHHHHHHHHhCCceEEEEeecCCchhHHHHHhhCC
Confidence 345666666666666789999999999988777666653
No 194
>PF03283 PAE: Pectinacetylesterase
Probab=80.41 E-value=6.6 Score=32.34 Aligned_cols=47 Identities=19% Similarity=0.111 Sum_probs=30.0
Q ss_pred eeeHhHHHHHHHHHHHHHHHHHHHHhh-CC-CceEEEeeechhHHHHHHHHHHHHhc
Q 038038 42 YVHNGSLKAARWVFNAECEFLRGLVDR-NP-NYTLTFAGHSLGAGVVALLVLIVVQN 96 (150)
Q Consensus 42 ~vH~Gf~~~~~~~~~~~~~~l~~~~~~-~~-~~~i~itGHSLGGalA~l~a~~~~~~ 96 (150)
.-|+|... +++.|+.++++ .+ -.+|+++|-|-||--|.+-+-++++.
T Consensus 132 l~frG~~i--------~~avl~~l~~~gl~~a~~vlltG~SAGG~g~~~~~d~~~~~ 180 (361)
T PF03283_consen 132 LYFRGYRI--------LRAVLDDLLSNGLPNAKQVLLTGCSAGGLGAILHADYVRDR 180 (361)
T ss_pred eEeecHHH--------HHHHHHHHHHhcCcccceEEEeccChHHHHHHHHHHHHHHH
Confidence 45666643 34455555554 32 25899999999987666666666653
No 195
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=80.37 E-value=2.1 Score=34.41 Aligned_cols=60 Identities=12% Similarity=0.094 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhhC----CCceEEEeeechhHHHHHHHHHHHHhcccccCCCCCCceEEEEecCCCCCCHH
Q 038038 56 NAECEFLRGLVDRN----PNYTLTFAGHSLGAGVVALLVLIVVQNLDKLGNIERNKIRCFAIAPTKCMSLN 122 (150)
Q Consensus 56 ~~~~~~l~~~~~~~----~~~~i~itGHSLGGalA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~P~v~~~~ 122 (150)
+++.++|+.+.... ...+|++.|||-|---.. .++...... -..+.|.-+..-+| |.+++
T Consensus 88 ~eI~~~v~ylr~~~~g~~~~~kIVLmGHSTGcQdvl---~Yl~~~~~~---~~~~~VdG~ILQAp-VSDRE 151 (303)
T PF08538_consen 88 EEIAQLVEYLRSEKGGHFGREKIVLMGHSTGCQDVL---HYLSSPNPS---PSRPPVDGAILQAP-VSDRE 151 (303)
T ss_dssp HHHHHHHHHHHHHS------S-EEEEEECCHHHHHH---HHHHH-TT------CCCEEEEEEEEE----TT
T ss_pred HHHHHHHHHHHHhhccccCCccEEEEecCCCcHHHH---HHHhccCcc---ccccceEEEEEeCC-CCChh
Confidence 45777777777663 457999999999965332 222222100 01356776666666 55544
No 196
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=80.07 E-value=4.2 Score=34.19 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=17.9
Q ss_pred CceEEEeeechhHHHHHHHHHH
Q 038038 71 NYTLTFAGHSLGAGVVALLVLI 92 (150)
Q Consensus 71 ~~~i~itGHSLGGalA~l~a~~ 92 (150)
..+|+|.|||-||.++..+...
T Consensus 175 ~~~v~~~G~SaG~~~~~~~~~~ 196 (493)
T cd00312 175 PDSVTIFGESAGGASVSLLLLS 196 (493)
T ss_pred cceEEEEeecHHHHHhhhHhhC
Confidence 3599999999999988776654
No 197
>PF02089 Palm_thioest: Palmitoyl protein thioesterase; InterPro: IPR002472 Neuronal ceroid lipofuscinoses (NCL) represent a group of encephalopathies that occur in 1 in 12,500 children. Mutations in the palmitoyl protein thioesterase gene causing infantile neuronal ceroid lipofuscinosis []. The most common mutation results in intracellular accumulation of the polypeptide and undetectable enzyme activity in the brain. Direct sequencing of cDNAs derived from brain RNA of INCL patients has shown a mis-sense transversion of A to T at nucleotide position 364, which results in substitution of Trp for Arg at position 122 in the protein - Arg 122 is immediately adjacent to a lipase consensus sequence that contains the putative active site Ser of PPT. The occurrence of this and two other independent mutations in the PPT gene strongly suggests that defects in this gene cause INCL.; GO: 0008474 palmitoyl-(protein) hydrolase activity, 0006464 protein modification process; PDB: 3GRO_B 1PJA_A 1EXW_A 1EH5_A 1EI9_A.
Probab=79.24 E-value=13 Score=29.59 Aligned_cols=37 Identities=11% Similarity=0.066 Sum_probs=23.5
Q ss_pred eEEEeeechhHHHHHHHHHHHHhcccccCCCCCCceE-EEEecCCCCC
Q 038038 73 TLTFAGHSLGAGVVALLVLIVVQNLDKLGNIERNKIR-CFAIAPTKCM 119 (150)
Q Consensus 73 ~i~itGHSLGGalA~l~a~~~~~~~~~~g~~~~~~i~-~~tFg~P~v~ 119 (150)
-+-..|+|.||-++--+.-.+-. ++|+ .+|||+|--|
T Consensus 81 G~~~IGfSQGgl~lRa~vq~c~~----------~~V~nlISlggph~G 118 (279)
T PF02089_consen 81 GFNAIGFSQGGLFLRAYVQRCND----------PPVHNLISLGGPHMG 118 (279)
T ss_dssp -EEEEEETCHHHHHHHHHHH-TS----------S-EEEEEEES--TT-
T ss_pred ceeeeeeccccHHHHHHHHHCCC----------CCceeEEEecCcccc
Confidence 58888999999887766665521 3444 8999998766
No 198
>PRK07238 bifunctional RNase H/acid phosphatase; Provisional
Probab=79.11 E-value=7.2 Score=31.86 Aligned_cols=41 Identities=20% Similarity=0.124 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHH
Q 038038 51 ARWVFNAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIV 93 (150)
Q Consensus 51 ~~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~ 93 (150)
+..+..++.+.++++..++++..++|++| ||.+..+++..+
T Consensus 292 ~~~~~~Rv~~~l~~l~~~~~~~~vlvVtH--g~~ir~ll~~~l 332 (372)
T PRK07238 292 FDAVARRVRRARDRLIAEYPGATVLVVSH--VTPIKTLLRLAL 332 (372)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCeEEEEEC--hHHHHHHHHHHh
Confidence 33456667788888877777788999999 899988888776
No 199
>PTZ00387 epsilon tubulin; Provisional
Probab=78.89 E-value=2.1 Score=36.46 Aligned_cols=54 Identities=20% Similarity=0.171 Sum_probs=37.5
Q ss_pred eeeHhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHHHh
Q 038038 42 YVHNGSLKAARWVFNAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIVVQ 95 (150)
Q Consensus 42 ~vH~Gf~~~~~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~~~ 95 (150)
.--.|++.......+.+.+.|++..++.....=+++=|||||+-++-++..+.+
T Consensus 101 nwa~G~~~~g~~~~d~~~d~Ir~~~E~cD~l~gf~i~~slgGGTGSGlgs~lle 154 (465)
T PTZ00387 101 NWAVGHMEYGDKYIDSISESVRRQVEQCDSLQSFFLMHSLGGGTGSGLGTRILG 154 (465)
T ss_pred CcCCCcccccHHHHHHHHHHHHHHHHhccCcceEEEEeecCCCcchhHHHHHHH
Confidence 344566665566677788888888887654454566799999777666666544
No 200
>PLN02213 sinapoylglucose-malate O-sinapoyltransferase/ carboxypeptidase
Probab=78.61 E-value=12 Score=30.07 Aligned_cols=62 Identities=19% Similarity=0.220 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhhCC---CceEEEeeechhHHHHHHHHHHHHhcccccCCCCCCceEEEEecCCCC
Q 038038 56 NAECEFLRGLVDRNP---NYTLTFAGHSLGAGVVALLVLIVVQNLDKLGNIERNKIRCFAIAPTKC 118 (150)
Q Consensus 56 ~~~~~~l~~~~~~~~---~~~i~itGHSLGGalA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~P~v 118 (150)
+++..+|+..++++| +..++|+|-|.||-....+|..+.+.... +.-+.-+++-+..|-|-+
T Consensus 32 ~d~~~fL~~Ff~~~p~~~~~~fyI~GESYaG~YiP~la~~I~~~n~~-~~~~~inLkGi~IGNg~t 96 (319)
T PLN02213 32 KRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYI-CCEPPINLQGYMLGNPVT 96 (319)
T ss_pred HHHHHHHHHHHHhCcccccCCeEEEeeccccchHHHHHHHHHhhccc-ccCCceeeeEEEeCCCCC
Confidence 456667777776665 45899999999999999999988653211 111234677777777654
No 201
>cd07067 HP_PGM_like Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Subgroup of the catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This subgroup contains cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example, F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent His-to-Asp phos
Probab=78.60 E-value=6.7 Score=27.24 Aligned_cols=58 Identities=16% Similarity=0.217 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHHHhccccc--CCCCCCceEEEEecCC
Q 038038 57 AECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIVVQNLDKL--GNIERNKIRCFAIAPT 116 (150)
Q Consensus 57 ~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~~~~~~~~--g~~~~~~i~~~tFg~P 116 (150)
++.+.++++.+.+++..++|+|| |+.+..++...+......+ -.++...+.++.|..+
T Consensus 85 R~~~~~~~l~~~~~~~~iliV~H--~~~i~~~~~~l~~~~~~~~~~~~~~~~s~~~~~~~~~ 144 (153)
T cd07067 85 RVLPALEELIAPHDGKNVLIVSH--GGVLRALLAYLLGLSDEDILRLNLPNGSISVLELDEN 144 (153)
T ss_pred HHHHHHHHHHHhCCCCeEEEEeC--hHHHHHHHHHHhCCCHHHHHhcCCCCceEEEEEEeCC
Confidence 45566666666656678999999 8888888877664321110 0133445666666544
No 202
>KOG1516 consensus Carboxylesterase and related proteins [General function prediction only]
Probab=78.57 E-value=3.6 Score=35.11 Aligned_cols=21 Identities=48% Similarity=0.637 Sum_probs=18.6
Q ss_pred CceEEEeeechhHHHHHHHHH
Q 038038 71 NYTLTFAGHSLGAGVVALLVL 91 (150)
Q Consensus 71 ~~~i~itGHSLGGalA~l~a~ 91 (150)
..+|++.|||-||+.+.++.+
T Consensus 194 p~~vTl~G~saGa~~v~~l~~ 214 (545)
T KOG1516|consen 194 PKNVTLFGHSAGAASVSLLTL 214 (545)
T ss_pred CCeEEEEeechhHHHHHHHhc
Confidence 469999999999999988776
No 203
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=78.15 E-value=6.3 Score=33.30 Aligned_cols=41 Identities=12% Similarity=0.225 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHHHhc
Q 038038 56 NAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIVVQN 96 (150)
Q Consensus 56 ~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~~~~ 96 (150)
+.+.++++...+.-...+|-+.||+.||-++..+..++...
T Consensus 165 e~l~~aid~v~~itg~~~InliGyCvGGtl~~~ala~~~~k 205 (445)
T COG3243 165 EGLSEAIDTVKDITGQKDINLIGYCVGGTLLAAALALMAAK 205 (445)
T ss_pred HHHHHHHHHHHHHhCccccceeeEecchHHHHHHHHhhhhc
Confidence 44555555555544557899999999999988888877653
No 204
>KOG2112 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=78.08 E-value=5.5 Score=30.32 Aligned_cols=37 Identities=14% Similarity=0.213 Sum_probs=27.0
Q ss_pred HHHHHHHHHhhC-CCceEEEeeechhHHHHHHHHHHHH
Q 038038 58 ECEFLRGLVDRN-PNYTLTFAGHSLGAGVVALLVLIVV 94 (150)
Q Consensus 58 ~~~~l~~~~~~~-~~~~i~itGHSLGGalA~l~a~~~~ 94 (150)
+...+.+..+.. +..+|.+.|-|+|||+|..+++.+.
T Consensus 78 i~~Li~~e~~~Gi~~~rI~igGfs~G~a~aL~~~~~~~ 115 (206)
T KOG2112|consen 78 IANLIDNEPANGIPSNRIGIGGFSQGGALALYSALTYP 115 (206)
T ss_pred HHHHHHHHHHcCCCccceeEcccCchHHHHHHHHhccc
Confidence 334444444442 5568999999999999999999773
No 205
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=78.06 E-value=5.8 Score=33.43 Aligned_cols=62 Identities=19% Similarity=0.218 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhhCCC---ceEEEeeechhHHHHHHHHHHHHhcccccCCCCCCceEEEEecCCCC
Q 038038 56 NAECEFLRGLVDRNPN---YTLTFAGHSLGAGVVALLVLIVVQNLDKLGNIERNKIRCFAIAPTKC 118 (150)
Q Consensus 56 ~~~~~~l~~~~~~~~~---~~i~itGHSLGGalA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~P~v 118 (150)
+++..+|+..++.+|+ ..++|+|.|.||-.+..+|..+.+...+ +.-+.-+++-+..|.|-+
T Consensus 146 ~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~la~~i~~~n~~-~~~~~inLkGi~iGNg~t 210 (433)
T PLN03016 146 KRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYI-CCEPPINLQGYMLGNPVT 210 (433)
T ss_pred HHHHHHHHHHHHhChhhcCCCEEEEccCccceehHHHHHHHHhhccc-ccCCcccceeeEecCCCc
Confidence 4456666666666654 5799999999999999888888653211 111234777888888754
No 206
>PRK14118 gpmA phosphoglyceromutase; Provisional
Probab=77.47 E-value=9 Score=29.13 Aligned_cols=40 Identities=18% Similarity=0.175 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHhh--CCCceEEEeeechhHHHHHHHHHHH
Q 038038 52 RWVFNAECEFLRGLVDR--NPNYTLTFAGHSLGAGVVALLVLIV 93 (150)
Q Consensus 52 ~~~~~~~~~~l~~~~~~--~~~~~i~itGHSLGGalA~l~a~~~ 93 (150)
..+.+++.+.+++...+ +++.+|+|+.| ||.+-.+++..+
T Consensus 152 ~~~~~Rv~~~l~~~~~~~~~~~~~vlvVsH--ggvir~ll~~~l 193 (227)
T PRK14118 152 KVTLERVLPFWEDQIAPALLSGKRVLVAAH--GNSLRALAKHIE 193 (227)
T ss_pred HHHHHHHHHHHHHHHhhhhcCCCeEEEEeC--HHHHHHHHHHHh
Confidence 34566677777776543 46678999999 999988888765
No 207
>COG0627 Predicted esterase [General function prediction only]
Probab=76.92 E-value=2.8 Score=33.88 Aligned_cols=21 Identities=33% Similarity=0.302 Sum_probs=17.8
Q ss_pred eEEEeeechhHHHHHHHHHHH
Q 038038 73 TLTFAGHSLGAGVVALLVLIV 93 (150)
Q Consensus 73 ~i~itGHSLGGalA~l~a~~~ 93 (150)
.--|+||||||.-|..+|+.-
T Consensus 153 ~~aI~G~SMGG~GAl~lA~~~ 173 (316)
T COG0627 153 GRAIAGHSMGGYGALKLALKH 173 (316)
T ss_pred CceeEEEeccchhhhhhhhhC
Confidence 688999999999888877753
No 208
>PRK14116 gpmA phosphoglyceromutase; Provisional
Probab=76.70 E-value=7.1 Score=29.72 Aligned_cols=41 Identities=17% Similarity=0.191 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHh-h-CCCceEEEeeechhHHHHHHHHHHH
Q 038038 51 ARWVFNAECEFLRGLVD-R-NPNYTLTFAGHSLGAGVVALLVLIV 93 (150)
Q Consensus 51 ~~~~~~~~~~~l~~~~~-~-~~~~~i~itGHSLGGalA~l~a~~~ 93 (150)
...+.+++.+.++++.. . +++.+|+|+.| ||.+-.+++..+
T Consensus 152 ~~~~~~Rv~~~l~~~i~~~~~~~~~vlvVsH--g~vir~ll~~~~ 194 (228)
T PRK14116 152 LKVTLERVIPFWEDHIAPDLLDGKNVIIAAH--GNSLRALTKYIE 194 (228)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCeEEEEcC--hHHHHHHHHHHh
Confidence 34456677777777653 2 36678999999 999999888765
No 209
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=76.68 E-value=7.1 Score=31.89 Aligned_cols=25 Identities=16% Similarity=0.288 Sum_probs=22.8
Q ss_pred ceEEEeeechhHHHHHHHHHHHHhc
Q 038038 72 YTLTFAGHSLGAGVVALLVLIVVQN 96 (150)
Q Consensus 72 ~~i~itGHSLGGalA~l~a~~~~~~ 96 (150)
.+|.|+|=|-||.+|.-++..+.+.
T Consensus 166 ~rv~l~GDSaGGNia~~va~r~~~~ 190 (336)
T KOG1515|consen 166 SRVFLAGDSAGGNIAHVVAQRAADE 190 (336)
T ss_pred ccEEEEccCccHHHHHHHHHHHhhc
Confidence 4799999999999999999998865
No 210
>PTZ00010 tubulin beta chain; Provisional
Probab=76.59 E-value=3.4 Score=34.91 Aligned_cols=52 Identities=13% Similarity=0.148 Sum_probs=37.0
Q ss_pred eHhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHHHh
Q 038038 44 HNGSLKAARWVFNAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIVVQ 95 (150)
Q Consensus 44 H~Gf~~~~~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~~~ 95 (150)
-.|++.....+.+++.+.|++..++.....=+++=||+||+-++-++..+.+
T Consensus 102 a~G~~~~g~~~~~~i~d~irk~~E~cd~l~gf~i~~Sl~GGTGSGlgs~l~e 153 (445)
T PTZ00010 102 AKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQITHSLGGGTGSGMGTLLIS 153 (445)
T ss_pred ccchhhhhHHHHHHHHHHHhhhhhhccCccceEEEeccCCCccccHHHHHHH
Confidence 3677776667777788888888877655556666799998776655555543
No 211
>COG0406 phoE Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
Probab=76.51 E-value=9.7 Score=28.10 Aligned_cols=42 Identities=21% Similarity=0.255 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHH
Q 038038 50 AARWVFNAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIV 93 (150)
Q Consensus 50 ~~~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~ 93 (150)
.+..+..++.+.++++..++++..|+++.| ||.+-.++...+
T Consensus 124 s~~~~~~R~~~~~~~~~~~~~~~~vlvVsH--g~~ir~l~~~~~ 165 (208)
T COG0406 124 SLADVSKRVVAALAELLRSPPGNNVLVVSH--GGVIRALLAYLL 165 (208)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCeEEEEEC--hHHHHHHHHHhc
Confidence 344557778888999988877668999999 888876666554
No 212
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=75.96 E-value=7.7 Score=32.19 Aligned_cols=40 Identities=15% Similarity=0.183 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHHHhc
Q 038038 57 AECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIVVQN 96 (150)
Q Consensus 57 ~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~~~~ 96 (150)
++.+..+++.+.....+|++.|-|-||.+|.-+..++++.
T Consensus 180 qlv~~Y~~Lv~~~G~~nI~LmGDSAGGnL~Ls~LqyL~~~ 219 (374)
T PF10340_consen 180 QLVATYDYLVESEGNKNIILMGDSAGGNLALSFLQYLKKP 219 (374)
T ss_pred HHHHHHHHHHhccCCCeEEEEecCccHHHHHHHHHHHhhc
Confidence 4556666666444557899999999999999888888763
No 213
>PLN00221 tubulin alpha chain; Provisional
Probab=75.29 E-value=3 Score=35.35 Aligned_cols=53 Identities=13% Similarity=0.164 Sum_probs=37.5
Q ss_pred eeHhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHHHh
Q 038038 43 VHNGSLKAARWVFNAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIVVQ 95 (150)
Q Consensus 43 vH~Gf~~~~~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~~~ 95 (150)
--.||+.....+.+.+.+.|++..++.....=++.=||+||+.++-++..+.+
T Consensus 103 wa~Gy~~~g~~~~~~i~d~ir~~~E~cD~l~gf~i~~Sl~GGtGSGlgs~~le 155 (450)
T PLN00221 103 FARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLE 155 (450)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHhccCccceeEeeccCCCccchHHHHHHH
Confidence 34567665666677788888888887655556666799998776666665544
No 214
>PRK14115 gpmA phosphoglyceromutase; Provisional
Probab=75.15 E-value=11 Score=29.09 Aligned_cols=42 Identities=12% Similarity=0.140 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHhh--CCCceEEEeeechhHHHHHHHHHHHH
Q 038038 51 ARWVFNAECEFLRGLVDR--NPNYTLTFAGHSLGAGVVALLVLIVV 94 (150)
Q Consensus 51 ~~~~~~~~~~~l~~~~~~--~~~~~i~itGHSLGGalA~l~a~~~~ 94 (150)
+..+..++.+.+++...+ +++.+++|++| ||.+..+++..+.
T Consensus 151 ~~~~~~Rv~~~l~~~i~~~~~~~~~vlvVtH--ggvir~l~~~ll~ 194 (247)
T PRK14115 151 LKDTIARVLPYWNETIAPQLKSGKRVLIAAH--GNSLRALVKYLDN 194 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEEEeC--hHHHHHHHHHHhC
Confidence 334456667777765432 45678999999 9999998887763
No 215
>PLN02606 palmitoyl-protein thioesterase
Probab=74.69 E-value=8.7 Score=31.00 Aligned_cols=57 Identities=7% Similarity=-0.020 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHh--hCCCceEEEeeechhHHHHHHHHHHHHhcccccCCCCCCceE-EEEecCCCCCC
Q 038038 54 VFNAECEFLRGLVD--RNPNYTLTFAGHSLGAGVVALLVLIVVQNLDKLGNIERNKIR-CFAIAPTKCMS 120 (150)
Q Consensus 54 ~~~~~~~~l~~~~~--~~~~~~i~itGHSLGGalA~l~a~~~~~~~~~~g~~~~~~i~-~~tFg~P~v~~ 120 (150)
+.+|+....+++.+ +.++ -+-+.|+|.||-++--+.-.+-.. ++|+ .+|||+|--|.
T Consensus 76 ~~~Qv~~vce~l~~~~~L~~-G~naIGfSQGglflRa~ierc~~~---------p~V~nlISlggph~Gv 135 (306)
T PLN02606 76 LRQQASIACEKIKQMKELSE-GYNIVAESQGNLVARGLIEFCDNA---------PPVINYVSLGGPHAGV 135 (306)
T ss_pred HHHHHHHHHHHHhcchhhcC-ceEEEEEcchhHHHHHHHHHCCCC---------CCcceEEEecCCcCCc
Confidence 34444444444433 2232 478889999998877666554221 3344 78999876653
No 216
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=74.43 E-value=19 Score=22.66 Aligned_cols=58 Identities=17% Similarity=0.110 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhhCCCceEEEee---echhHHHHHHHHHHHHhcccccCCCCCCceEEEEecCCCCCC
Q 038038 57 AECEFLRGLVDRNPNYTLTFAG---HSLGAGVVALLVLIVVQNLDKLGNIERNKIRCFAIAPTKCMS 120 (150)
Q Consensus 57 ~~~~~l~~~~~~~~~~~i~itG---HSLGGalA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~P~v~~ 120 (150)
.+.+.|+.+.++....=.+||| ||.+|.|-..+--++.+. ...+.+.-|.-+.|.-++
T Consensus 14 ~l~~~l~~~~~~~~~~~~II~G~G~hS~~g~Lk~~V~~~L~~~------~~~~~v~~~~~~~~~~g~ 74 (83)
T PF01713_consen 14 ALEEFLDEARQRGIRELRIITGKGNHSKGGVLKRAVRRWLEEG------YQYEEVLAYRDAEPEDGN 74 (83)
T ss_dssp HHHHHHHHHHHTTHSEEEEE--STCTCCTSHHHHHHHHHHHHT------HCCTTEEEEEE--CCCTG
T ss_pred HHHHHHHHHHHcCCCEEEEEeccCCCCCCCcHHHHHHHHHHhh------hccchhheeeecCCCCCC
Confidence 3556666666554455668888 889998777777776542 123556666666665554
No 217
>PRK10802 peptidoglycan-associated outer membrane lipoprotein; Provisional
Probab=74.40 E-value=20 Score=26.26 Aligned_cols=53 Identities=19% Similarity=0.397 Sum_probs=36.2
Q ss_pred HHHHHHHHhhCCCceEEEeeec-----------hhHHHHHHHHHHHHhcccccCCCCCCceEEEEecCC
Q 038038 59 CEFLRGLVDRNPNYTLTFAGHS-----------LGAGVVALLVLIVVQNLDKLGNIERNKIRCFAIAPT 116 (150)
Q Consensus 59 ~~~l~~~~~~~~~~~i~itGHS-----------LGGalA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~P 116 (150)
.+.+-+.+.++|+.+|.|.||. |+-.-|.-+.-+|... | ++..++.+..||.=
T Consensus 88 L~~~a~~L~~~p~~~v~I~GhtD~~Gs~~yN~~LS~~RA~aV~~~L~~~----G-v~~~ri~~~g~Ge~ 151 (173)
T PRK10802 88 LDAHANFLRSNPSYKVTVEGHADERGTPEYNIALGERRANAVKMYLQGK----G-VSADQISIVSYGKE 151 (173)
T ss_pred HHHHHHHHHhCCCceEEEEEecCCCCChHHHHHHHHHHHHHHHHHHHHc----C-CCHHHeEEEEecCC
Confidence 3444455667898899999997 4444555555555442 3 66778999999984
No 218
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=74.12 E-value=5.7 Score=33.32 Aligned_cols=36 Identities=28% Similarity=0.265 Sum_probs=23.0
Q ss_pred ceEEEeeechhHHHHHHHHHHHHhcccccCCCCCCceEEEEecC
Q 038038 72 YTLTFAGHSLGAGVVALLVLIVVQNLDKLGNIERNKIRCFAIAP 115 (150)
Q Consensus 72 ~~i~itGHSLGGalA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~ 115 (150)
.+|+|.|||-||+.+.++.+. ... +..--+++..+.
T Consensus 208 ~~VTl~G~SAGa~sv~~~l~s--p~~------~~LF~raI~~SG 243 (535)
T PF00135_consen 208 DNVTLFGQSAGAASVSLLLLS--PSS------KGLFHRAILQSG 243 (535)
T ss_dssp EEEEEEEETHHHHHHHHHHHG--GGG------TTSBSEEEEES-
T ss_pred cceeeeeecccccccceeeec--ccc------cccccccccccc
Confidence 589999999998876665554 211 113446677666
No 219
>PRK01112 phosphoglyceromutase; Provisional
Probab=73.97 E-value=12 Score=28.51 Aligned_cols=40 Identities=8% Similarity=0.089 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHhh--CCCceEEEeeechhHHHHHHHHHHHH
Q 038038 53 WVFNAECEFLRGLVDR--NPNYTLTFAGHSLGAGVVALLVLIVV 94 (150)
Q Consensus 53 ~~~~~~~~~l~~~~~~--~~~~~i~itGHSLGGalA~l~a~~~~ 94 (150)
.+.+++.+.+++...+ .++.+|+|+.| ||.+..+++..+-
T Consensus 153 d~~~Rv~~~l~~~~~~~~~~~~~ilVVsH--g~vir~l~~~ll~ 194 (228)
T PRK01112 153 DTGQRTLPYFQNRILPHLQQGKNVFVSAH--GNSLRSLIMDLEK 194 (228)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEEeC--HHHHHHHHHHHhC
Confidence 3455566777755433 25578999999 9999999987763
No 220
>KOG3975 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.38 E-value=5.7 Score=31.47 Aligned_cols=16 Identities=31% Similarity=0.526 Sum_probs=13.5
Q ss_pred CCceEEEeeechhHHH
Q 038038 70 PNYTLTFAGHSLGAGV 85 (150)
Q Consensus 70 ~~~~i~itGHSLGGal 85 (150)
.+.+|++.|||-|+-+
T Consensus 108 k~~ki~iiGHSiGaYm 123 (301)
T KOG3975|consen 108 KDRKIYIIGHSIGAYM 123 (301)
T ss_pred CCCEEEEEecchhHHH
Confidence 4789999999999653
No 221
>TIGR02802 Pal_lipo peptidoglycan-associated lipoprotein. Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.
Probab=73.20 E-value=23 Score=23.15 Aligned_cols=51 Identities=16% Similarity=0.273 Sum_probs=31.7
Q ss_pred HHHHHhhCCCceEEEeeech--hHH---------HHHHHHHHHHhcccccCCCCCCceEEEEecCCC
Q 038038 62 LRGLVDRNPNYTLTFAGHSL--GAG---------VVALLVLIVVQNLDKLGNIERNKIRCFAIAPTK 117 (150)
Q Consensus 62 l~~~~~~~~~~~i~itGHSL--GGa---------lA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~P~ 117 (150)
+-+.+..+|+.+|.|.||+= |.. =|.-+.-+|... +++..++.+..||.-.
T Consensus 22 ~a~~l~~~~~~~i~I~Ghtd~~g~~~~N~~LS~~RA~~V~~~L~~~-----gi~~~ri~~~g~G~~~ 83 (104)
T TIGR02802 22 HAAYLKKNPSVRVTIEGHTDERGTREYNLALGERRANAVKDYLQAK-----GVSASQIETVSYGEEK 83 (104)
T ss_pred HHHHHHHCCCcEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHc-----CCCHHHeEEEeecccC
Confidence 34445678888999999983 322 233333333321 3666788999998843
No 222
>TIGR01258 pgm_1 phosphoglycerate mutase, BPG-dependent, family 1. Most members of this family are phosphoglycerate mutase (EC 5.4.2.1). This enzyme interconverts 2-phosphoglycerate and 3-phosphoglycerate. The enzyme is transiently phosphorylated on an active site histidine by 2,3-diphosphoglyerate, which is both substrate and product. Some members of this family have are phosphoglycerate mutase as a minor activity and act primarily as a bisphoglycerate mutase, interconverting 2,3-diphosphoglycerate and 1,3-diphosphoglycerate (EC 5.4.2.4). This model is designated as a subfamily for this reason. The second and third paralogs in S. cerevisiae are somewhat divergent and apparently inactive (see PUBMED:9544241) but are also part of this subfamily phylogenetically.
Probab=73.13 E-value=10 Score=29.27 Aligned_cols=41 Identities=10% Similarity=0.100 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHhh--CCCceEEEeeechhHHHHHHHHHHH
Q 038038 51 ARWVFNAECEFLRGLVDR--NPNYTLTFAGHSLGAGVVALLVLIV 93 (150)
Q Consensus 51 ~~~~~~~~~~~l~~~~~~--~~~~~i~itGHSLGGalA~l~a~~~ 93 (150)
...+.+++.+.++++..+ +++.+++|+.| ||.+..+++..+
T Consensus 151 ~~~~~~Rv~~~l~~l~~~~~~~~~~vlvVsH--g~vir~l~~~l~ 193 (245)
T TIGR01258 151 LKDTIARVLPYWNDEIAPDLLSGKRVLIVAH--GNSLRALVKHLE 193 (245)
T ss_pred HHHHHHHHHHHHHHHHhhhhcCCCEEEEEcC--hHHHHHHHHHHH
Confidence 344566677777776533 36678999999 999999888776
No 223
>PF09994 DUF2235: Uncharacterized alpha/beta hydrolase domain (DUF2235); InterPro: IPR018712 This domain has no known function.
Probab=72.79 E-value=11 Score=29.76 Aligned_cols=40 Identities=18% Similarity=0.129 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhhC-CCceEEEeeechhHHHHHHHHHHHHh
Q 038038 56 NAECEFLRGLVDRN-PNYTLTFAGHSLGAGVVALLVLIVVQ 95 (150)
Q Consensus 56 ~~~~~~l~~~~~~~-~~~~i~itGHSLGGalA~l~a~~~~~ 95 (150)
..+..+.+.+.+.+ |+.+|++.|-|-||+.|-.++-++..
T Consensus 75 ~~I~~ay~~l~~~~~~gd~I~lfGFSRGA~~AR~~a~~i~~ 115 (277)
T PF09994_consen 75 ARIRDAYRFLSKNYEPGDRIYLFGFSRGAYTARAFANMIDK 115 (277)
T ss_pred HHHHHHHHHHHhccCCcceEEEEecCccHHHHHHHHHHHhh
Confidence 34556666665554 77899999999999999999988743
No 224
>KOG3734 consensus Predicted phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=72.71 E-value=9.5 Score=30.28 Aligned_cols=40 Identities=18% Similarity=0.245 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHH
Q 038038 51 ARWVFNAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLI 92 (150)
Q Consensus 51 ~~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~ 92 (150)
...+.++....++++.+++++.+|+|++| |.++.+..+..
T Consensus 174 ~e~~~~R~~~~~k~i~~k~~~~~lLIV~H--~~sv~~~~~~l 213 (272)
T KOG3734|consen 174 LEDCNDRIQKVFKAIADKYPNENLLIVAH--GSSVDTCSAQL 213 (272)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCceEEEec--cchHHHHHHHh
Confidence 34446678888999999999999999999 55666666554
No 225
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=72.48 E-value=3.6 Score=30.45 Aligned_cols=53 Identities=11% Similarity=0.077 Sum_probs=32.8
Q ss_pred ceeeHhHHH-----HHHHHHHHHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHHHhc
Q 038038 41 GYVHNGSLK-----AARWVFNAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIVVQN 96 (150)
Q Consensus 41 ~~vH~Gf~~-----~~~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~~~~ 96 (150)
....+|++. ..+.+.++..+.+++.++.. ..++.=|||||+..+-++..+.+.
T Consensus 50 n~~~~G~~~~~~~~~g~~~~~~~~~~ir~~le~~---d~~~i~~slgGGTGsG~~~~i~~~ 107 (192)
T smart00864 50 NNWTRGLGAGADPEVGREAAEESLDEIREELEGA---DGVFITAGMGGGTGTGAAPVIAEI 107 (192)
T ss_pred ccccccCCCCCChHHHHHHHHHHHHHHHHHhcCC---CEEEEeccCCCCccccHHHHHHHH
Confidence 344455553 34445555556666666543 677778999997777777666543
No 226
>PRK01295 phosphoglyceromutase; Provisional
Probab=71.52 E-value=11 Score=28.10 Aligned_cols=38 Identities=16% Similarity=0.225 Sum_probs=25.8
Q ss_pred HHHHHHHHH-HHHHhh-CCCceEEEeeechhHHHHHHHHHHH
Q 038038 54 VFNAECEFL-RGLVDR-NPNYTLTFAGHSLGAGVVALLVLIV 93 (150)
Q Consensus 54 ~~~~~~~~l-~~~~~~-~~~~~i~itGHSLGGalA~l~a~~~ 93 (150)
+..++.+.+ +.++++ .++.+++|++| ||.+..+++..+
T Consensus 131 ~~~Rv~~~~~~~i~~~~~~~~~vliVtH--g~~ir~l~~~~l 170 (206)
T PRK01295 131 TGARVLPYYLQEILPRVLRGERVLVAAH--GNSLRALVMVLD 170 (206)
T ss_pred HHHHHHHHHHHHHHHhccCCCeEEEEcC--hHHHHHHHHHHh
Confidence 344555543 344443 35678999999 899988888766
No 227
>PRK14120 gpmA phosphoglyceromutase; Provisional
Probab=71.47 E-value=12 Score=29.14 Aligned_cols=40 Identities=20% Similarity=0.160 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHH-Hh-hCCCceEEEeeechhHHHHHHHHHHH
Q 038038 52 RWVFNAECEFLRGL-VD-RNPNYTLTFAGHSLGAGVVALLVLIV 93 (150)
Q Consensus 52 ~~~~~~~~~~l~~~-~~-~~~~~~i~itGHSLGGalA~l~a~~~ 93 (150)
..+.+++.+.++++ ++ .+++.+|+|++| ||.+-++++..+
T Consensus 154 ~~~~~Rv~~~l~~~~~~~~~~~~~iliVsH--ggvir~l~~~~~ 195 (249)
T PRK14120 154 KDVVARFLPYWEDDIVPDLKAGKTVLIAAH--GNSLRALVKHLD 195 (249)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCEEEEEeC--HHHHHHHHHHHh
Confidence 44466677777764 33 346678999999 899999888765
No 228
>PRK14117 gpmA phosphoglyceromutase; Provisional
Probab=70.40 E-value=13 Score=28.29 Aligned_cols=42 Identities=14% Similarity=0.176 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHH-hhC-CCceEEEeeechhHHHHHHHHHHH
Q 038038 50 AARWVFNAECEFLRGLV-DRN-PNYTLTFAGHSLGAGVVALLVLIV 93 (150)
Q Consensus 50 ~~~~~~~~~~~~l~~~~-~~~-~~~~i~itGHSLGGalA~l~a~~~ 93 (150)
+...+.+++.+.++++. +.+ ++.+|+|+.| ||.+-.+++..+
T Consensus 151 s~~~~~~Rv~~~l~~~~~~~~~~~~~vlvVsH--g~~ir~ll~~~l 194 (230)
T PRK14117 151 NLKVTLERALPFWEDKIAPALKDGKNVFVGAH--GNSIRALVKHIK 194 (230)
T ss_pred CHHHHHHHHHHHHHHHHHhhccCCCEEEEEeC--hHHHHHHHHHHh
Confidence 34455777888888765 333 4568999999 999988888765
No 229
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=68.86 E-value=16 Score=31.17 Aligned_cols=64 Identities=19% Similarity=0.227 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhhCC---CceEEEeeechhHHHHHHHHHHHHhcccccCCCCCCceEEEEecCCCCC
Q 038038 55 FNAECEFLRGLVDRNP---NYTLTFAGHSLGAGVVALLVLIVVQNLDKLGNIERNKIRCFAIAPTKCM 119 (150)
Q Consensus 55 ~~~~~~~l~~~~~~~~---~~~i~itGHSLGGalA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~P~v~ 119 (150)
.+++..+|.+.++++| ...++|+|-|.+|-.-.-+|..+.+.... ...+.-+++-+..|-|-.-
T Consensus 148 A~d~~~FL~~wf~kfPey~~~~fyI~GESYAG~YVP~La~~I~~~N~~-~~~~~iNLkG~~IGNg~td 214 (454)
T KOG1282|consen 148 AKDNYEFLQKWFEKFPEYKSNDFYIAGESYAGHYVPALAQEILKGNKK-CCKPNINLKGYAIGNGLTD 214 (454)
T ss_pred HHHHHHHHHHHHHhChhhcCCCeEEecccccceehHHHHHHHHhcccc-ccCCcccceEEEecCcccC
Confidence 4556667777777665 45899999999997776666666554211 0112357888888877543
No 230
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=67.76 E-value=18 Score=29.08 Aligned_cols=34 Identities=21% Similarity=0.312 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhhCCCceEEEeeechhHHHHHHH
Q 038038 55 FNAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALL 89 (150)
Q Consensus 55 ~~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~ 89 (150)
..++...+. ..++++.+++++.||+.|++++.=+
T Consensus 177 ~ari~Aa~~-~~~~~~~~~ivlIg~G~gA~~~~~~ 210 (310)
T PF12048_consen 177 FARIEAAIA-FAQQQGGKNIVLIGHGTGAGWAARY 210 (310)
T ss_pred HHHHHHHHH-HHHhcCCceEEEEEeChhHHHHHHH
Confidence 333444444 3345677789999999998865433
No 231
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=66.85 E-value=21 Score=29.01 Aligned_cols=39 Identities=23% Similarity=0.140 Sum_probs=28.0
Q ss_pred HHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHHHhc
Q 038038 58 ECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIVVQN 96 (150)
Q Consensus 58 ~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~~~~ 96 (150)
+...+..+++.....++.+.||+.||-+|--++++..+.
T Consensus 99 l~~di~~lld~Lg~~k~~lvgHDwGaivaw~la~~~Per 137 (322)
T KOG4178|consen 99 LVGDIVALLDHLGLKKAFLVGHDWGAIVAWRLALFYPER 137 (322)
T ss_pred HHHHHHHHHHHhccceeEEEeccchhHHHHHHHHhChhh
Confidence 334444444444567999999999999998888876543
No 232
>cd07040 HP Histidine phosphatase domain found in a functionally diverse set of proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This set of proteins includes cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, histidine acid phosphatases, phytases, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent Hi
Probab=65.98 E-value=18 Score=24.73 Aligned_cols=37 Identities=22% Similarity=0.265 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhhC--CCceEEEeeechhHHHHHHHHHHHHh
Q 038038 57 AECEFLRGLVDRN--PNYTLTFAGHSLGAGVVALLVLIVVQ 95 (150)
Q Consensus 57 ~~~~~l~~~~~~~--~~~~i~itGHSLGGalA~l~a~~~~~ 95 (150)
++.+.++++.... +...++++|| |+.+..++...+..
T Consensus 83 r~~~~~~~~~~~~~~~~~~iliv~H--~~~i~~~~~~l~~~ 121 (153)
T cd07040 83 RVLNALLELLARHLLDGKNVLIVSH--GGTIRALLAALLGL 121 (153)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEEeC--CHHHHHHHHHHhCc
Confidence 3556666666654 4578999999 88888888887654
No 233
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=65.26 E-value=4 Score=33.70 Aligned_cols=20 Identities=25% Similarity=0.292 Sum_probs=16.1
Q ss_pred CceEEEeeechhHHHHHHHH
Q 038038 71 NYTLTFAGHSLGAGVVALLV 90 (150)
Q Consensus 71 ~~~i~itGHSLGGalA~l~a 90 (150)
..+|-+.|||+||.-+.-++
T Consensus 158 ~~~Vgv~GhS~GG~T~m~la 177 (365)
T COG4188 158 PQRVGVLGHSFGGYTAMELA 177 (365)
T ss_pred ccceEEEecccccHHHHHhc
Confidence 46899999999998766544
No 234
>COG3673 Uncharacterized conserved protein [Function unknown]
Probab=64.61 E-value=34 Score=28.24 Aligned_cols=39 Identities=23% Similarity=0.118 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhhC-CCceEEEeeechhHHHHHHHHHHHHh
Q 038038 57 AECEFLRGLVDRN-PNYTLTFAGHSLGAGVVALLVLIVVQ 95 (150)
Q Consensus 57 ~~~~~l~~~~~~~-~~~~i~itGHSLGGalA~l~a~~~~~ 95 (150)
.+.++..=+++.| |+-+|+..|-|-|+-.|-++|.+++.
T Consensus 106 nI~~AYrFL~~~yepGD~Iy~FGFSRGAf~aRVlagmir~ 145 (423)
T COG3673 106 NIREAYRFLIFNYEPGDEIYAFGFSRGAFSARVLAGMIRH 145 (423)
T ss_pred HHHHHHHHHHHhcCCCCeEEEeeccchhHHHHHHHHHHHH
Confidence 3555555555555 78899999999999999999998854
No 235
>KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism]
Probab=63.61 E-value=6.4 Score=32.99 Aligned_cols=53 Identities=15% Similarity=0.276 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHHHhcccccCCCCCCceEEEEecCCCC
Q 038038 58 ECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIVVQNLDKLGNIERNKIRCFAIAPTKC 118 (150)
Q Consensus 58 ~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~P~v 118 (150)
+-+.|+.+++.-...++..+|||.|.+..-+...+ +. ++ ..+|+.+..=+|.+
T Consensus 147 LPA~IdyIL~~T~~~kl~yvGHSQGtt~~fv~lS~-~p---~~----~~kI~~~~aLAP~~ 199 (403)
T KOG2624|consen 147 LPAMIDYILEKTGQEKLHYVGHSQGTTTFFVMLSE-RP---EY----NKKIKSFIALAPAA 199 (403)
T ss_pred HHHHHHHHHHhccccceEEEEEEccchhheehhcc-cc---hh----hhhhheeeeecchh
Confidence 66777777776556789999999998754333322 11 11 14566666666655
No 236
>PF14253 AbiH: Bacteriophage abortive infection AbiH
Probab=61.80 E-value=4.4 Score=31.20 Aligned_cols=16 Identities=31% Similarity=0.281 Sum_probs=13.0
Q ss_pred CceEEEeeechhHHHH
Q 038038 71 NYTLTFAGHSLGAGVV 86 (150)
Q Consensus 71 ~~~i~itGHSLGGalA 86 (150)
-..|+|.|||||.+=.
T Consensus 234 i~~I~i~GhSl~~~D~ 249 (270)
T PF14253_consen 234 IDEIIIYGHSLGEVDY 249 (270)
T ss_pred CCEEEEEeCCCchhhH
Confidence 3689999999998633
No 237
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=61.63 E-value=11 Score=30.41 Aligned_cols=40 Identities=18% Similarity=0.078 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHhhCC-CceEEEeeechhHHHHHHHHHHH
Q 038038 54 VFNAECEFLRGLVDRNP-NYTLTFAGHSLGAGVVALLVLIV 93 (150)
Q Consensus 54 ~~~~~~~~l~~~~~~~~-~~~i~itGHSLGGalA~l~a~~~ 93 (150)
+.+++.+.|++-..... ...=+++|-||||.+|.++++..
T Consensus 158 L~~eLlP~v~~~yp~~~~a~~r~L~G~SlGG~vsL~agl~~ 198 (299)
T COG2382 158 LAQELLPYVEERYPTSADADGRVLAGDSLGGLVSLYAGLRH 198 (299)
T ss_pred HHHHhhhhhhccCcccccCCCcEEeccccccHHHHHHHhcC
Confidence 44555666555443332 12346789999999888888753
No 238
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=60.81 E-value=34 Score=21.91 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=18.6
Q ss_pred CceEEEeeechhHHHHHHHHHHH
Q 038038 71 NYTLTFAGHSLGAGVVALLVLIV 93 (150)
Q Consensus 71 ~~~i~itGHSLGGalA~l~a~~~ 93 (150)
.++++|+|-|-|=++|+=.+.-+
T Consensus 39 pK~VLViGaStGyGLAsRIa~aF 61 (78)
T PF12242_consen 39 PKKVLVIGASTGYGLASRIAAAF 61 (78)
T ss_dssp -SEEEEES-SSHHHHHHHHHHHH
T ss_pred CceEEEEecCCcccHHHHHHHHh
Confidence 47999999999999998777766
No 239
>KOG1553 consensus Predicted alpha/beta hydrolase BAT5 [General function prediction only]
Probab=60.04 E-value=14 Score=30.78 Aligned_cols=82 Identities=21% Similarity=0.167 Sum_probs=42.6
Q ss_pred CCeEEEEEcCCCCCCccchhhcccCCCCCccCCCceeeHhHHHHH-----HHHHHHHHHHHHHHHh--hCCCceEEEeee
Q 038038 7 KTDIVLAIRGLNLAKEGGYAVLLDNKLGQTKLDGGYVHNGSLKAA-----RWVFNAECEFLRGLVD--RNPNYTLTFAGH 79 (150)
Q Consensus 7 ~~~ivva~RGT~~~~d~~~~~~~d~~~~~~~~~~~~vH~Gf~~~~-----~~~~~~~~~~l~~~~~--~~~~~~i~itGH 79 (150)
.+++||++-|-..+.+--. +.+.+..+++ .-|.-|-||..+- .+-.+.+...+.-+.+ .++...|++-|.
T Consensus 242 gq~LvIC~EGNAGFYEvG~-m~tP~~lgYs--vLGwNhPGFagSTG~P~p~n~~nA~DaVvQfAI~~Lgf~~edIilygW 318 (517)
T KOG1553|consen 242 GQDLVICFEGNAGFYEVGV-MNTPAQLGYS--VLGWNHPGFAGSTGLPYPVNTLNAADAVVQFAIQVLGFRQEDIILYGW 318 (517)
T ss_pred CceEEEEecCCccceEeee-ecChHHhCce--eeccCCCCccccCCCCCcccchHHHHHHHHHHHHHcCCCccceEEEEe
Confidence 3678899999887766321 1222333221 1123344443321 0111222222222322 256678999999
Q ss_pred chhHHHHHHHHH
Q 038038 80 SLGAGVVALLVL 91 (150)
Q Consensus 80 SLGGalA~l~a~ 91 (150)
|.||--++-+|.
T Consensus 319 SIGGF~~~waAs 330 (517)
T KOG1553|consen 319 SIGGFPVAWAAS 330 (517)
T ss_pred ecCCchHHHHhh
Confidence 999987666655
No 240
>COG2885 OmpA Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane]
Probab=59.90 E-value=66 Score=23.51 Aligned_cols=59 Identities=15% Similarity=0.239 Sum_probs=38.3
Q ss_pred HHHHHHHHHhhCCCceEEEeee-----------chhHHHHHHHHHHHHhcccccCCCCCCceEEEEecC--CCCCCH
Q 038038 58 ECEFLRGLVDRNPNYTLTFAGH-----------SLGAGVVALLVLIVVQNLDKLGNIERNKIRCFAIAP--TKCMSL 121 (150)
Q Consensus 58 ~~~~l~~~~~~~~~~~i~itGH-----------SLGGalA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~--P~v~~~ 121 (150)
..+.+-+.++++|..+|.|.|| -|+---|.-++-+|... | +...+|.+..||. |-+.|.
T Consensus 101 ~L~~~a~~L~~~p~~~i~V~GHTD~~Gs~~yN~~LS~rRA~aV~~~L~~~----G-v~~~~i~~~G~G~~~Pia~n~ 172 (190)
T COG2885 101 TLDELAKYLKKNPITRILVEGHTDSTGSDEYNQALSERRAEAVADYLVSQ----G-VVADRISTVGYGEEKPIASNA 172 (190)
T ss_pred HHHHHHHHHHhCCCcEEEEEecCCCCCCHHHhHHHHHHHHHHHHHHHHHc----C-CCcccEEEEEcCcCCCCCCCC
Confidence 4445556667789999999999 34444444455555443 3 3445899999988 655443
No 241
>KOG4667 consensus Predicted esterase [Lipid transport and metabolism]
Probab=57.62 E-value=8.5 Score=29.93 Aligned_cols=21 Identities=33% Similarity=0.366 Sum_probs=17.5
Q ss_pred EEeeechhHHHHHHHHHHHHh
Q 038038 75 TFAGHSLGAGVVALLVLIVVQ 95 (150)
Q Consensus 75 ~itGHSLGGalA~l~a~~~~~ 95 (150)
+|.|||.||-++.+.+..+..
T Consensus 108 vi~gHSkGg~Vvl~ya~K~~d 128 (269)
T KOG4667|consen 108 VILGHSKGGDVVLLYASKYHD 128 (269)
T ss_pred EEEeecCccHHHHHHHHhhcC
Confidence 577999999999888887644
No 242
>PF10081 Abhydrolase_9: Alpha/beta-hydrolase family; InterPro: IPR012037 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=57.20 E-value=31 Score=27.67 Aligned_cols=39 Identities=31% Similarity=0.194 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCceEEEeeechhHHHHHHH
Q 038038 50 AARWVFNAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALL 89 (150)
Q Consensus 50 ~~~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~ 89 (150)
+++.+++.+.+.+..+=+. ..-+|++.|-|||+--+.-+
T Consensus 88 a~~aL~~aV~~~~~~lP~~-~RPkL~l~GeSLGa~g~~~a 126 (289)
T PF10081_consen 88 AARALFEAVYARWSTLPED-RRPKLYLYGESLGAYGGEAA 126 (289)
T ss_pred HHHHHHHHHHHHHHhCCcc-cCCeEEEeccCccccchhhh
Confidence 3344444444443333221 23489999999996544433
No 243
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=55.60 E-value=53 Score=27.59 Aligned_cols=23 Identities=17% Similarity=0.096 Sum_probs=20.7
Q ss_pred EEEeeechhHHHHHHHHHHHHhc
Q 038038 74 LTFAGHSLGAGVVALLVLIVVQN 96 (150)
Q Consensus 74 i~itGHSLGGalA~l~a~~~~~~ 96 (150)
+.+.|.++||-++..++..+...
T Consensus 170 v~l~GvCqgG~~~laa~Al~a~~ 192 (406)
T TIGR01849 170 IHVIAVCQPAVPVLAAVALMAEN 192 (406)
T ss_pred CcEEEEchhhHHHHHHHHHHHhc
Confidence 89999999999999999888764
No 244
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=54.60 E-value=68 Score=26.59 Aligned_cols=33 Identities=24% Similarity=0.343 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhhC---CCceEEEeeechhHHHHHHH
Q 038038 57 AECEFLRGLVDRN---PNYTLTFAGHSLGAGVVALL 89 (150)
Q Consensus 57 ~~~~~l~~~~~~~---~~~~i~itGHSLGGalA~l~ 89 (150)
++...++.+..++ ++.++++.|=|.||+||+-+
T Consensus 95 D~a~F~~~~~~~~~~~~~~pwI~~GgSY~G~Laaw~ 130 (434)
T PF05577_consen 95 DLAYFIRYVKKKYNTAPNSPWIVFGGSYGGALAAWF 130 (434)
T ss_dssp HHHHHHHHHHHHTTTGCC--EEEEEETHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCCCEEEECCcchhHHHHHH
Confidence 3444455444433 56789999999999966544
No 245
>KOG2541 consensus Palmitoyl protein thioesterase [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=54.10 E-value=44 Score=26.73 Aligned_cols=66 Identities=14% Similarity=0.145 Sum_probs=38.5
Q ss_pred eeHhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHHHhcccccCCCCCCceEEEEecCCCCC
Q 038038 43 VHNGSLKAARWVFNAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIVVQNLDKLGNIERNKIRCFAIAPTKCM 119 (150)
Q Consensus 43 vH~Gf~~~~~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~P~v~ 119 (150)
+-.+++.-.....+.+.++++.. .+.+ .-..+.|-|.||-+|--++-.+-.. +-..-++.|.|-.|
T Consensus 65 ~~~s~l~pl~~Qv~~~ce~v~~m-~~ls-qGynivg~SQGglv~Raliq~cd~p---------pV~n~ISL~gPhaG 130 (296)
T KOG2541|consen 65 IKDSSLMPLWEQVDVACEKVKQM-PELS-QGYNIVGYSQGGLVARALIQFCDNP---------PVKNFISLGGPHAG 130 (296)
T ss_pred cchhhhccHHHHHHHHHHHHhcc-hhcc-CceEEEEEccccHHHHHHHHhCCCC---------CcceeEeccCCcCC
Confidence 55556555444444566666633 3333 2366779999999988877766331 23335555555444
No 246
>KOG2308 consensus Phosphatidic acid-preferring phospholipase A1, contains DDHD domain [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.08 E-value=19 Score=32.45 Aligned_cols=18 Identities=56% Similarity=1.058 Sum_probs=14.1
Q ss_pred hhCCCce--EEEeeechhHH
Q 038038 67 DRNPNYT--LTFAGHSLGAG 84 (150)
Q Consensus 67 ~~~~~~~--i~itGHSLGGa 84 (150)
..+|++. |-|.|||||.-
T Consensus 410 ~rnPef~G~Vsi~gHSLGSv 429 (741)
T KOG2308|consen 410 DRNPEFNGKVSIAGHSLGSV 429 (741)
T ss_pred hcChhhcCceeeccCCCCce
Confidence 3467765 99999999964
No 247
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=49.66 E-value=27 Score=28.59 Aligned_cols=46 Identities=13% Similarity=0.059 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHhhCC--CceEEEeeechhHHHHHHHHHHHHh
Q 038038 50 AARWVFNAECEFLRGLVDRNP--NYTLTFAGHSLGAGVVALLVLIVVQ 95 (150)
Q Consensus 50 ~~~~~~~~~~~~l~~~~~~~~--~~~i~itGHSLGGalA~l~a~~~~~ 95 (150)
..+.+.++..+.|++.++... +...++.=|||||+.++-++..+.+
T Consensus 74 ~G~~~aee~~e~I~~~le~~~~~~~d~~~i~aglGGGTGsG~~p~iae 121 (349)
T cd02202 74 LGAEVAEEDLEEVMRAIDDRGTSDADAILVIAGLGGGTGSGGAPVLAK 121 (349)
T ss_pred HHHHHHHHHHHHHHHHHhccccccccEEEEecccCCCccccHHHHHHH
Confidence 344455555556666666533 3678899999999988877776654
No 248
>PF13173 AAA_14: AAA domain
Probab=48.24 E-value=22 Score=24.09 Aligned_cols=27 Identities=30% Similarity=0.302 Sum_probs=21.4
Q ss_pred HHHHHHHHHhhCCCceEEEeeechhHH
Q 038038 58 ECEFLRGLVDRNPNYTLTFAGHSLGAG 84 (150)
Q Consensus 58 ~~~~l~~~~~~~~~~~i~itGHSLGGa 84 (150)
....++.+.+..++.++++||.|.+..
T Consensus 76 ~~~~lk~l~d~~~~~~ii~tgS~~~~l 102 (128)
T PF13173_consen 76 WEDALKFLVDNGPNIKIILTGSSSSLL 102 (128)
T ss_pred HHHHHHHHHHhccCceEEEEccchHHH
Confidence 556677777777788999999998865
No 249
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism]
Probab=47.91 E-value=11 Score=29.98 Aligned_cols=35 Identities=23% Similarity=0.242 Sum_probs=27.9
Q ss_pred HHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHH
Q 038038 59 CEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIV 93 (150)
Q Consensus 59 ~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~ 93 (150)
.+.++.++-...-.+|.++|||+=|+++.++....
T Consensus 141 ~AalE~aV~~lkvenIiv~ghs~cgGik~~m~~~~ 175 (276)
T KOG1578|consen 141 GAALEYAVTTLKVENIIVIGHSLCGGIKGLMSFSL 175 (276)
T ss_pred cchHHHHHHHhccceEEEeccccCCchhhcccccc
Confidence 46677777666667899999999999998877643
No 250
>PRK15416 lipopolysaccharide core heptose(II)-phosphate phosphatase; Provisional
Probab=47.21 E-value=22 Score=26.90 Aligned_cols=33 Identities=9% Similarity=0.125 Sum_probs=22.7
Q ss_pred HHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHH
Q 038038 58 ECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLI 92 (150)
Q Consensus 58 ~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~ 92 (150)
..+.+.+...+.++.+|+|+||+ -++..++..+
T Consensus 138 ~~~~i~~~i~~~~~~tVLIVGHn--p~i~~La~~~ 170 (201)
T PRK15416 138 IYSAIKDLQRKSPDKNIVIFTHN--HCLTYIAKDK 170 (201)
T ss_pred hHHHHHHHHHhCCCCEEEEEeCc--hhHHHHHHHh
Confidence 34445666677777899999995 4566666643
No 251
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=47.15 E-value=39 Score=30.75 Aligned_cols=23 Identities=13% Similarity=0.115 Sum_probs=20.0
Q ss_pred CCceEEEeeechhHHHHHHHHHH
Q 038038 70 PNYTLTFAGHSLGAGVVALLVLI 92 (150)
Q Consensus 70 ~~~~i~itGHSLGGalA~l~a~~ 92 (150)
++.+|-++|.|.||.++..+|..
T Consensus 336 snGkVGm~G~SY~G~~~~~aAa~ 358 (767)
T PRK05371 336 SNGKVAMTGKSYLGTLPNAVATT 358 (767)
T ss_pred CCCeeEEEEEcHHHHHHHHHHhh
Confidence 36799999999999999988764
No 252
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=46.63 E-value=26 Score=29.13 Aligned_cols=30 Identities=13% Similarity=0.046 Sum_probs=19.5
Q ss_pred HHHHHHHHHhhCCCceEEEeeechhHHHHHH
Q 038038 58 ECEFLRGLVDRNPNYTLTFAGHSLGAGVVAL 88 (150)
Q Consensus 58 ~~~~l~~~~~~~~~~~i~itGHSLGGalA~l 88 (150)
+...++++.++. +...++||||+|--..+.
T Consensus 272 m~r~a~~iA~~~-g~~~IaTGhslgqvaSQt 301 (381)
T PRK08384 272 MVKHADRIAKEF-GAKGIVMGDSLGQVASQT 301 (381)
T ss_pred HHHHHHHHHHHc-CCCEEEEcccchhHHHHH
Confidence 344555555444 578999999999744443
No 253
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=46.16 E-value=36 Score=25.41 Aligned_cols=35 Identities=17% Similarity=0.189 Sum_probs=25.3
Q ss_pred HHHHHHHHhhCCCceEEEeeech----hHHHHHHHHHHHH
Q 038038 59 CEFLRGLVDRNPNYTLTFAGHSL----GAGVVALLVLIVV 94 (150)
Q Consensus 59 ~~~l~~~~~~~~~~~i~itGHSL----GGalA~l~a~~~~ 94 (150)
.+.|.++.++.. ..++++|||. |+-+|..+|..+-
T Consensus 97 a~al~~~i~~~~-p~lVL~~~t~~~~~grdlaprlAarLg 135 (202)
T cd01714 97 AKALAAAIKKIG-VDLILTGKQSIDGDTGQVGPLLAELLG 135 (202)
T ss_pred HHHHHHHHHHhC-CCEEEEcCCcccCCcCcHHHHHHHHhC
Confidence 344444444432 5799999999 8899999999874
No 254
>KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism]
Probab=45.74 E-value=31 Score=26.68 Aligned_cols=35 Identities=29% Similarity=0.422 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHH
Q 038038 56 NAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVL 91 (150)
Q Consensus 56 ~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~ 91 (150)
+...++|++.+.++..+.= |.|-|.|+++|.+++.
T Consensus 89 eesl~yl~~~i~enGPFDG-llGFSQGA~laa~l~~ 123 (230)
T KOG2551|consen 89 EESLEYLEDYIKENGPFDG-LLGFSQGAALAALLAG 123 (230)
T ss_pred HHHHHHHHHHHHHhCCCcc-ccccchhHHHHHHhhc
Confidence 3345677777776533322 4499999999999888
No 255
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=44.40 E-value=19 Score=27.53 Aligned_cols=27 Identities=33% Similarity=0.354 Sum_probs=21.6
Q ss_pred CCceEEEeeechhHHHHHHHHHHHHhcc
Q 038038 70 PNYTLTFAGHSLGAGVVALLVLIVVQNL 97 (150)
Q Consensus 70 ~~~~i~itGHSLGGalA~l~a~~~~~~~ 97 (150)
++.=+++|||| |++=++++-+.+...+
T Consensus 27 ~Gef~fl~GpS-GAGKSTllkLi~~~e~ 53 (223)
T COG2884 27 KGEFVFLTGPS-GAGKSTLLKLIYGEER 53 (223)
T ss_pred CceEEEEECCC-CCCHHHHHHHHHhhhc
Confidence 45668999998 8888999988887653
No 256
>PF02983 Pro_Al_protease: Alpha-lytic protease prodomain; InterPro: IPR004236 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. The alpha-lytic protease prodomain is associated with serine peptidases, specifically the alpha-lytic endopeptidases and streptogrisin A, B, C, D and E, which are bacterial enzymes and which belong to MEROPS peptidase subfamily S1A (IPR001316 from INTERPRO). The protease precursor in Gram-negative bacterial proteases may be a general property of extracellular bacterial proteases []. The proteases are encoded with a large (166 amino acid) N-terminal pro region that is required transiently both in vivo and in vitro for the correct folding of the protease domain [, ]. The pro region also acts as a potent inhibitor of the mature enzyme []. ; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis, 0005576 extracellular region; PDB: 3PRO_C 2PRO_B 4PRO_C.
Probab=44.34 E-value=19 Score=21.81 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=18.3
Q ss_pred CcccCCCCeEEEEEcCCCCCCcc
Q 038038 1 WVVLQKKTDIVLAIRGLNLAKEG 23 (150)
Q Consensus 1 ~~~d~~~~~ivva~RGT~~~~d~ 23 (150)
|.+|.+++++||....+....++
T Consensus 28 WyvD~~tn~VVV~a~~~~aa~~~ 50 (62)
T PF02983_consen 28 WYVDPRTNKVVVTADSTVAAAAF 50 (62)
T ss_dssp EEEECCCTEEEEEEECT-CCHCC
T ss_pred EEEeCCCCeEEEEECCCccHHHH
Confidence 88999999999999988754443
No 257
>smart00827 PKS_AT Acyl transferase domain in polyketide synthase (PKS) enzymes.
Probab=44.26 E-value=33 Score=26.63 Aligned_cols=17 Identities=35% Similarity=0.436 Sum_probs=12.9
Q ss_pred EEEeeechhHHHHHHHH
Q 038038 74 LTFAGHSLGAGVVALLV 90 (150)
Q Consensus 74 i~itGHSLGGalA~l~a 90 (150)
-.++|||+|--.|..++
T Consensus 84 ~~~~GhSlGE~aA~~~a 100 (298)
T smart00827 84 DAVVGHSLGEIAAAYVA 100 (298)
T ss_pred cEEEecCHHHHHHHHHh
Confidence 47899999976665554
No 258
>COG0331 FabD (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]
Probab=44.25 E-value=43 Score=27.03 Aligned_cols=18 Identities=33% Similarity=0.183 Sum_probs=12.9
Q ss_pred CCceEEEeeechhHHHHH
Q 038038 70 PNYTLTFAGHSLGAGVVA 87 (150)
Q Consensus 70 ~~~~i~itGHSLGGalA~ 87 (150)
.....++.|||||=--|.
T Consensus 83 ~~~p~~~aGHSlGEysAl 100 (310)
T COG0331 83 GVKPDFVAGHSLGEYSAL 100 (310)
T ss_pred CCCCceeecccHhHHHHH
Confidence 455679999999954333
No 259
>COG4099 Predicted peptidase [General function prediction only]
Probab=43.56 E-value=48 Score=27.16 Aligned_cols=30 Identities=13% Similarity=0.030 Sum_probs=19.9
Q ss_pred HHHHHH-HHHhhC--CCceEEEeeechhHHHHH
Q 038038 58 ECEFLR-GLVDRN--PNYTLTFAGHSLGAGVVA 87 (150)
Q Consensus 58 ~~~~l~-~~~~~~--~~~~i~itGHSLGGalA~ 87 (150)
..+.+. .+.++| ...+|+++|.|.||-.+-
T Consensus 252 ~idli~~vlas~ynID~sRIYviGlSrG~~gt~ 284 (387)
T COG4099 252 KIDLILEVLASTYNIDRSRIYVIGLSRGGFGTW 284 (387)
T ss_pred HHHHHHHHHhhccCcccceEEEEeecCcchhhH
Confidence 344444 555555 356999999999976443
No 260
>PTZ00122 phosphoglycerate mutase; Provisional
Probab=42.45 E-value=82 Score=25.15 Aligned_cols=38 Identities=11% Similarity=0.043 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhhCC---CceEEEeeechhHHHHHHHHHHHH
Q 038038 55 FNAECEFLRGLVDRNP---NYTLTFAGHSLGAGVVALLVLIVV 94 (150)
Q Consensus 55 ~~~~~~~l~~~~~~~~---~~~i~itGHSLGGalA~l~a~~~~ 94 (150)
.+++.+.++++.++++ +..++|++| ||.+-.++...+-
T Consensus 213 ~~Rv~~al~~i~~r~~~~~~~~vLVVsH--GgvIR~ll~~lLg 253 (299)
T PTZ00122 213 MKRIEAAFEKYFHRPVEDEDSVEIIVCH--GNVIRYLVCRALQ 253 (299)
T ss_pred HHHHHHHHHHHHHhcccCCCCeEEEEeC--ChHHHHHHHHHhC
Confidence 4566777777765543 345799999 8999988887653
No 261
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=42.40 E-value=36 Score=22.72 Aligned_cols=28 Identities=11% Similarity=0.162 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhhCCCceEEEeeechhHH
Q 038038 57 AECEFLRGLVDRNPNYTLTFAGHSLGAG 84 (150)
Q Consensus 57 ~~~~~l~~~~~~~~~~~i~itGHSLGGa 84 (150)
.-...|+++++.+|+.+.+++|-|=-.=
T Consensus 50 ~K~~~i~~i~~~fP~~kfiLIGDsgq~D 77 (100)
T PF09949_consen 50 HKRDNIERILRDFPERKFILIGDSGQHD 77 (100)
T ss_pred HHHHHHHHHHHHCCCCcEEEEeeCCCcC
Confidence 3456788899999999999999885544
No 262
>PRK07734 motB flagellar motor protein MotB; Reviewed
Probab=41.70 E-value=1.7e+02 Score=22.78 Aligned_cols=52 Identities=15% Similarity=0.241 Sum_probs=31.2
Q ss_pred HHHHHHhhCCCceEEEeeech--h-------------HHHHHHHHHHHHhcccccCCCCCCceEEEEecCC
Q 038038 61 FLRGLVDRNPNYTLTFAGHSL--G-------------AGVVALLVLIVVQNLDKLGNIERNKIRCFAIAPT 116 (150)
Q Consensus 61 ~l~~~~~~~~~~~i~itGHSL--G-------------GalA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~P 116 (150)
.|-..+..+++..|.|.||.= | .+-|.-+.-++... ++++..++.+..||.-
T Consensus 163 ~ia~~l~~~~~~~i~I~GhTD~~~~~~~~~~~N~~LS~~RA~~V~~~L~~~----~gi~~~ri~~~G~G~~ 229 (259)
T PRK07734 163 EISNLLVSNPPRNITISGHTDNVPIANAQFASNWELSVMRAVNFMQVLLEN----KELDPEKFSAKGYGEY 229 (259)
T ss_pred HHHHHHHHCCCCeEEEEEecCCCCCccCCchhHHHHHHHHHHHHHHHHHHh----cCCChhhEEEEEEcCc
Confidence 334445556677899999973 2 33444333343322 2356678899899873
No 263
>COG3581 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.56 E-value=34 Score=28.69 Aligned_cols=42 Identities=10% Similarity=0.158 Sum_probs=32.9
Q ss_pred CCceEEEeeechhHHHHHHHHHHHHhcccccCCCCCCceEEEEecC
Q 038038 70 PNYTLTFAGHSLGAGVVALLVLIVVQNLDKLGNIERNKIRCFAIAP 115 (150)
Q Consensus 70 ~~~~i~itGHSLGGalA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~ 115 (150)
.+..+++|+ |.||+-|.-.-..++.-....| .+++.++++.+
T Consensus 71 ~n~~vlmt~-TgGpCRfgnYi~~~rkaLk~aG---~~~V~visLn~ 112 (420)
T COG3581 71 ENDAVLMTQ-TGGPCRFGNYIELLRKALKDAG---FRDVPVISLNS 112 (420)
T ss_pred cccEEEEec-CCCCcchhhHHHHHHHHHHHcC---CCCCcEEEeec
Confidence 356889999 9999999988888776544433 47999999984
No 264
>cd07209 Pat_hypo_Ecoli_Z1214_like Hypothetical patatin similar to Z1214 protein of Escherichia coli. Patatin-like phospholipase similar to Z1214 protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=41.14 E-value=68 Score=24.02 Aligned_cols=20 Identities=30% Similarity=0.091 Sum_probs=17.1
Q ss_pred EEEeeechhHHHHHHHHHHH
Q 038038 74 LTFAGHSLGAGVVALLVLIV 93 (150)
Q Consensus 74 i~itGHSLGGalA~l~a~~~ 93 (150)
=.++|-|.|+-+|.+++...
T Consensus 28 d~i~GtS~GAl~aa~~a~~~ 47 (215)
T cd07209 28 DIISGTSIGAINGALIAGGD 47 (215)
T ss_pred CEEEEECHHHHHHHHHHcCC
Confidence 37889999999999998854
No 265
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=40.88 E-value=88 Score=19.39 Aligned_cols=45 Identities=13% Similarity=0.171 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhhCCCceEEEeeec-hhHHHHHHHHHHHHhcccccCCCCCCceEEEEec
Q 038038 57 AECEFLRGLVDRNPNYTLTFAGHS-LGAGVVALLVLIVVQNLDKLGNIERNKIRCFAIA 114 (150)
Q Consensus 57 ~~~~~l~~~~~~~~~~~i~itGHS-LGGalA~l~a~~~~~~~~~~g~~~~~~i~~~tFg 114 (150)
.+...|.++.+++|+ -+++.|.+ .|+ -.+|..+... ..+.++.|-
T Consensus 19 ~i~~~Ld~~~~~~~~-~~lvhGga~~Ga---D~iA~~wA~~---------~gv~~~~~~ 64 (71)
T PF10686_consen 19 LIWAALDKVHARHPD-MVLVHGGAPKGA---DRIAARWARE---------RGVPVIRFP 64 (71)
T ss_pred HHHHHHHHHHHhCCC-EEEEECCCCCCH---HHHHHHHHHH---------CCCeeEEeC
Confidence 366778888888886 45777776 664 3344444442 356666654
No 266
>cd07185 OmpA_C-like Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.
Probab=40.71 E-value=55 Score=20.93 Aligned_cols=53 Identities=17% Similarity=0.407 Sum_probs=31.5
Q ss_pred HHHHHhhCCCceEEEeeechhHH-----------HHHHHHHHHHhcccccCCCCCCceEEEEecCCCCC
Q 038038 62 LRGLVDRNPNYTLTFAGHSLGAG-----------VVALLVLIVVQNLDKLGNIERNKIRCFAIAPTKCM 119 (150)
Q Consensus 62 l~~~~~~~~~~~i~itGHSLGGa-----------lA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~P~v~ 119 (150)
+-..++.+++.+|.|.||+-..+ -|.-+.-+|.+. | ++...+.+..+|.....
T Consensus 24 ~~~~l~~~~~~~v~v~g~a~~~g~~~~n~~Ls~~RA~~v~~~L~~~----g-~~~~~i~~~~~G~~~~~ 87 (106)
T cd07185 24 LAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSK----G-VDASRITAVGYGESRPI 87 (106)
T ss_pred HHHHHHHCCCceEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHc----C-CCHHHEEEEEeCCcCcC
Confidence 34455667888999999986531 122222223222 2 34458899999975443
No 267
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=40.39 E-value=92 Score=26.30 Aligned_cols=36 Identities=14% Similarity=0.141 Sum_probs=24.0
Q ss_pred CceEEEeeechhHHHHHHHHHHHHhcccccCCCCCCceEEEEecCC
Q 038038 71 NYTLTFAGHSLGAGVVALLVLIVVQNLDKLGNIERNKIRCFAIAPT 116 (150)
Q Consensus 71 ~~~i~itGHSLGGalA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~P 116 (150)
..+|-+.|-|+||.+|.=+|.. +. ....-|++.|+|
T Consensus 260 ~~RV~~~G~SfGGy~AvRlA~l--e~--------~RlkavV~~Ga~ 295 (411)
T PF06500_consen 260 HTRVGAWGFSFGGYYAVRLAAL--ED--------PRLKAVVALGAP 295 (411)
T ss_dssp EEEEEEEEETHHHHHHHHHHHH--TT--------TT-SEEEEES--
T ss_pred hhheEEEEeccchHHHHHHHHh--cc--------cceeeEeeeCch
Confidence 3589999999999998876653 11 123347888887
No 268
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=39.37 E-value=71 Score=26.19 Aligned_cols=43 Identities=16% Similarity=0.232 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHHHh
Q 038038 50 AARWVFNAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIVVQ 95 (150)
Q Consensus 50 ~~~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~~~ 95 (150)
..+...++..+.|++.++. ...++.=|||||+..+-++..+.+
T Consensus 83 ~G~~~aee~~d~Ir~~le~---~D~vfI~aglGGGTGSG~apvia~ 125 (349)
T TIGR00065 83 IGRKAAEESRDEIRKLLEG---ADMVFITAGMGGGTGTGAAPVVAK 125 (349)
T ss_pred HHHHHHHHHHHHHHHHHhC---CCEEEEEEeccCccchhHHHHHHH
Confidence 3445555556666666654 334455599999887777765544
No 269
>TIGR03131 malonate_mdcH malonate decarboxylase, epsilon subunit. Members of this protein family are the epsilon subunit of malonate decarboxylase. This subunit has malonyl-CoA/dephospho-CoA acyltransferase activity. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. The epsilon subunit is closely related to the malonyl CoA-acyl carrier protein (ACP) transacylase family described by TIGR00128, but acts on an ACP subunit of malonate decarboxylase that has an unusual coenzyme A derivative as its prothetic group.
Probab=38.96 E-value=45 Score=26.00 Aligned_cols=18 Identities=28% Similarity=0.342 Sum_probs=13.5
Q ss_pred eEEEeeechhHHHHHHHH
Q 038038 73 TLTFAGHSLGAGVVALLV 90 (150)
Q Consensus 73 ~i~itGHSLGGalA~l~a 90 (150)
.-.+.|||+|=-.|..++
T Consensus 77 P~~v~GhS~GE~aAa~~a 94 (295)
T TIGR03131 77 PSAVAGYSVGEYAAAVVA 94 (295)
T ss_pred CcEEeecCHHHHHHHHHh
Confidence 467899999986666554
No 270
>TIGR03350 type_VI_ompA type VI secretion system OmpA/MotB family protein. The flagellar motor protein MotB and the Gram-negative bacterial outer membrane protein OmpA share a region of sequence homology. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology.
Probab=38.56 E-value=1.3e+02 Score=20.67 Aligned_cols=49 Identities=12% Similarity=0.208 Sum_probs=29.9
Q ss_pred HHHHHhhCCCceEEEeeech---------------hHHHHHHHHHHHHhcccccCCCCCCceEEEEecCC
Q 038038 62 LRGLVDRNPNYTLTFAGHSL---------------GAGVVALLVLIVVQNLDKLGNIERNKIRCFAIAPT 116 (150)
Q Consensus 62 l~~~~~~~~~~~i~itGHSL---------------GGalA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~P 116 (150)
+-+.++.+| .+|.|.||+= ...-|.-++-+|... +++..++.+..||.-
T Consensus 52 ia~~l~~~~-~~i~I~GhTD~~~~~~~~~~~N~~LS~~RA~aV~~~L~~~-----Gi~~~ri~~~g~G~~ 115 (137)
T TIGR03350 52 IAKALAAVP-GRITVVGHTDNVPIRTSRFPSNWHLSEARAKAVADVLAQG-----GVPAGRVRAEGRGDS 115 (137)
T ss_pred HHHHHHhCC-CeEEEEEecCCCCCccCCcccHHHHHHHHHHHHHHHHHHc-----CCCHHHEEEEEECCC
Confidence 333444556 6899999982 223345555555442 255678888888873
No 271
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=38.25 E-value=59 Score=23.58 Aligned_cols=34 Identities=21% Similarity=0.154 Sum_probs=20.9
Q ss_pred HHHHHHHHHhhCCCceEEEeeec--hhHHHHHHHHH
Q 038038 58 ECEFLRGLVDRNPNYTLTFAGHS--LGAGVVALLVL 91 (150)
Q Consensus 58 ~~~~l~~~~~~~~~~~i~itGHS--LGGalA~l~a~ 91 (150)
+.+.+++..-+..++++++.|.| .|--+|.++.-
T Consensus 23 ii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~ 58 (160)
T PF02882_consen 23 IIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLN 58 (160)
T ss_dssp HHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHh
Confidence 44555554334578999999999 68776666554
No 272
>PF02495 7kD_coat: 7kD viral coat protein; InterPro: IPR003411 This family consists of a 7 kDa coat protein from Carlavirus and Potexvirus [].
Probab=38.21 E-value=21 Score=21.30 Aligned_cols=14 Identities=21% Similarity=0.574 Sum_probs=11.4
Q ss_pred hCCCceEEEeeech
Q 038038 68 RNPNYTLTFAGHSL 81 (150)
Q Consensus 68 ~~~~~~i~itGHSL 81 (150)
..++..|.+||||-
T Consensus 23 ~~~~C~I~ItGeSv 36 (59)
T PF02495_consen 23 SSPSCVIVITGESV 36 (59)
T ss_pred CCCCcEEEEeCcEE
Confidence 45678999999984
No 273
>PF00698 Acyl_transf_1: Acyl transferase domain; InterPro: IPR014043 Enzymes like bacterial malonyl CoA-acly carrier protein transacylase (2.3.1.39 from EC) and eukaryotic fatty acid synthase (2.3.1.85 from EC) that are involved in fatty acid biosynthesis belong to this group. Also included are the polyketide synthases 6-methylsalicylic acid synthase (2.3.1 from EC), a multifunctional enzyme that involved in the biosynthesis of patulin and conidial green pigment synthase (2.3.1 from EC).; PDB: 3HHD_C 2JFD_D 2JFK_A 3G87_A 3IM9_A 2QO3_B 3IM8_A 3EZO_A 2QJ3_A 2QC3_A ....
Probab=37.97 E-value=28 Score=27.64 Aligned_cols=18 Identities=28% Similarity=0.278 Sum_probs=12.2
Q ss_pred ceEEEeeechhHHHHHHH
Q 038038 72 YTLTFAGHSLGAGVVALL 89 (150)
Q Consensus 72 ~~i~itGHSLGGalA~l~ 89 (150)
..-.+.|||+|=--|..+
T Consensus 84 ~P~~v~GhSlGE~aA~~a 101 (318)
T PF00698_consen 84 KPDAVIGHSLGEYAALVA 101 (318)
T ss_dssp CESEEEESTTHHHHHHHH
T ss_pred ccceeeccchhhHHHHHH
Confidence 345678999996555444
No 274
>smart00855 PGAM Phosphoglycerate mutase family. Phosphoglycerate mutase (PGAM) and bisphosphoglycerate mutase (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate PUBMED:2847721, PUBMED:2831102, PUBMED:10958932. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein.
Probab=36.14 E-value=82 Score=21.77 Aligned_cols=28 Identities=14% Similarity=0.149 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHhhC--CCceEEEeee
Q 038038 52 RWVFNAECEFLRGLVDRN--PNYTLTFAGH 79 (150)
Q Consensus 52 ~~~~~~~~~~l~~~~~~~--~~~~i~itGH 79 (150)
..+..++.+.++++.+++ .+..+++++|
T Consensus 119 ~~~~~Rv~~~~~~i~~~~~~~~~~vlvVtH 148 (155)
T smart00855 119 ADVVERLVRALEELIATHDKSGQNVLIVSH 148 (155)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCeEEEEEC
Confidence 344555666677766554 4567999999
No 275
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=35.77 E-value=76 Score=28.24 Aligned_cols=36 Identities=14% Similarity=0.212 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhCCCceEEEeee------chhHHHHHHHHHHHHh
Q 038038 58 ECEFLRGLVDRNPNYTLTFAGH------SLGAGVVALLVLIVVQ 95 (150)
Q Consensus 58 ~~~~l~~~~~~~~~~~i~itGH------SLGGalA~l~a~~~~~ 95 (150)
+..+|++...+. .+|+|.|| ++|+|++...-..+..
T Consensus 326 is~al~d~i~e~--d~VfImGHk~pDmDalGsAig~~~~A~~~~ 367 (655)
T COG3887 326 ISTALSDIIKES--DNVFIMGHKFPDMDALGSAIGMQKFASMNN 367 (655)
T ss_pred HHHHHHHHHhhc--CcEEEEccCCCChHHHHHHHHHHHHHHhcc
Confidence 455666666553 57999999 8999999887776543
No 276
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=35.69 E-value=79 Score=25.17 Aligned_cols=40 Identities=10% Similarity=0.160 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHHHh
Q 038038 53 WVFNAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIVVQ 95 (150)
Q Consensus 53 ~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~~~ 95 (150)
...++..+.|++.++. ...++.=|||||+..+-++..+.+
T Consensus 69 ~~a~~~~~~I~~~l~~---~d~v~i~aglGGGTGSG~ap~ia~ 108 (304)
T cd02201 69 KAAEESREEIKEALEG---ADMVFITAGMGGGTGTGAAPVIAK 108 (304)
T ss_pred HHHHHHHHHHHHHHhC---CCEEEEeeccCCCcchhHHHHHHH
Confidence 3344455556666554 346677899999887777776644
No 277
>cd07217 Pat17_PNPLA8_PNPLA9_like4 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=35.41 E-value=89 Score=25.53 Aligned_cols=17 Identities=29% Similarity=0.389 Sum_probs=15.7
Q ss_pred EEeeechhHHHHHHHHH
Q 038038 75 TFAGHSLGAGVVALLVL 91 (150)
Q Consensus 75 ~itGHSLGGalA~l~a~ 91 (150)
+|+|-|-||-+|.+++.
T Consensus 44 lIaGTStGgIIAa~la~ 60 (344)
T cd07217 44 FVGGTSTGSIIAACIAL 60 (344)
T ss_pred EEEEecHHHHHHHHHHc
Confidence 78999999999999986
No 278
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=35.02 E-value=95 Score=21.76 Aligned_cols=33 Identities=15% Similarity=0.036 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhhCCCceEEEeeechhHHHHHHH
Q 038038 57 AECEFLRGLVDRNPNYTLTFAGHSLGAGVVALL 89 (150)
Q Consensus 57 ~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~ 89 (150)
++.+.|+++.+.-+-..|++...|.||.++...
T Consensus 15 ~l~~~l~~a~~d~~~~~ivl~~~s~Gg~~~~~~ 47 (161)
T cd00394 15 QLAAQIRFAEADNSVKAIVLEVNTPGGRVDAGM 47 (161)
T ss_pred HHHHHHHHHHhCCCCceEEEEEECCCcCHHHHH
Confidence 344445544433333456666666666554443
No 279
>KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=34.83 E-value=33 Score=30.65 Aligned_cols=47 Identities=17% Similarity=0.184 Sum_probs=31.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHH
Q 038038 45 NGSLKAARWVFNAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVL 91 (150)
Q Consensus 45 ~Gf~~~~~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~ 91 (150)
.+...+++.+..-.+-.+.+...++|...|.+.|-|+|+.+|-.++.
T Consensus 223 ~nI~h~ae~~vSf~r~kvlei~gefpha~IiLvGrsmGAlVachVSp 269 (784)
T KOG3253|consen 223 ANIKHAAEYSVSFDRYKVLEITGEFPHAPIILVGRSMGALVACHVSP 269 (784)
T ss_pred cchHHHHHHHHHHhhhhhhhhhccCCCCceEEEecccCceeeEEecc
Confidence 44444544444444445556667789999999999999766555444
No 280
>cd07205 Pat_PNPLA6_PNPLA7_NTE1_like Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are included in this family. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologus to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and panc
Probab=34.45 E-value=1.2e+02 Score=21.65 Aligned_cols=19 Identities=37% Similarity=0.165 Sum_probs=16.3
Q ss_pred EEEeeechhHHHHHHHHHH
Q 038038 74 LTFAGHSLGAGVVALLVLI 92 (150)
Q Consensus 74 i~itGHSLGGalA~l~a~~ 92 (150)
=.++|=|-|+-+|.+++..
T Consensus 30 d~i~GtSaGal~a~~~a~g 48 (175)
T cd07205 30 DIVSGTSAGAIVGALYAAG 48 (175)
T ss_pred eEEEEECHHHHHHHHHHcC
Confidence 3789999999999988864
No 281
>KOG3967 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.01 E-value=1.6e+02 Score=23.10 Aligned_cols=44 Identities=14% Similarity=0.265 Sum_probs=25.9
Q ss_pred CCceEEEeeechhHHHHHHHHHHHHhcccccCCCCCCceEEEEe-----cCCCCCCHH
Q 038038 70 PNYTLTFAGHSLGAGVVALLVLIVVQNLDKLGNIERNKIRCFAI-----APTKCMSLN 122 (150)
Q Consensus 70 ~~~~i~itGHSLGGalA~l~a~~~~~~~~~~g~~~~~~i~~~tF-----g~P~v~~~~ 122 (150)
.-..+.++-||.||.+ .+.+... ++ ....|..++| +.|..++.+
T Consensus 188 ~~~sv~vvahsyGG~~----t~~l~~~---f~--~d~~v~aialTDs~~~~p~a~~~e 236 (297)
T KOG3967|consen 188 KAESVFVVAHSYGGSL----TLDLVER---FP--DDESVFAIALTDSAMGSPQAKNKE 236 (297)
T ss_pred CcceEEEEEeccCChh----HHHHHHh---cC--CccceEEEEeecccccCchhcCcc
Confidence 3458999999999983 3343332 22 1256665554 455555554
No 282
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=33.70 E-value=50 Score=26.44 Aligned_cols=22 Identities=23% Similarity=0.295 Sum_probs=18.0
Q ss_pred HHHHHHHHHhhCCCceEEEeee
Q 038038 58 ECEFLRGLVDRNPNYTLTFAGH 79 (150)
Q Consensus 58 ~~~~l~~~~~~~~~~~i~itGH 79 (150)
+-+.|.++++++..-=|+||||
T Consensus 142 qp~~i~~Ll~~~~PDIlViTGH 163 (287)
T PF05582_consen 142 QPEKIYRLLEEYRPDILVITGH 163 (287)
T ss_pred hhHHHHHHHHHcCCCEEEEeCc
Confidence 4667888888887678999999
No 283
>TIGR00128 fabD malonyl CoA-acyl carrier protein transacylase. The seed alignment for this family of proteins contains a single member each from a number of bacterial species but also an additional pair of closely related, uncharacterized proteins from B. subtilis, one of which has a long C-terminal extension.
Probab=33.22 E-value=33 Score=26.44 Aligned_cols=18 Identities=33% Similarity=0.261 Sum_probs=13.0
Q ss_pred eEEEeeechhHHHHHHHH
Q 038038 73 TLTFAGHSLGAGVVALLV 90 (150)
Q Consensus 73 ~i~itGHSLGGalA~l~a 90 (150)
.-.++|||+|=-.|..++
T Consensus 84 p~~v~GhS~GE~aAa~~a 101 (290)
T TIGR00128 84 PDFAAGHSLGEYSALVAA 101 (290)
T ss_pred CCEEeecCHHHHHHHHHh
Confidence 357899999986555544
No 284
>COG0304 FabB 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=32.05 E-value=35 Score=28.71 Aligned_cols=35 Identities=17% Similarity=0.318 Sum_probs=19.9
Q ss_pred HHHHHHHHhhCCC-----ceEEEeeechhHHHHHHHHHHH
Q 038038 59 CEFLRGLVDRNPN-----YTLTFAGHSLGAGVVALLVLIV 93 (150)
Q Consensus 59 ~~~l~~~~~~~~~-----~~i~itGHSLGGalA~l~a~~~ 93 (150)
..+|++++.++.. ..=-.|||+||++-|.=+.+-+
T Consensus 314 ~~ai~~vfg~~~~~~~vsstKs~tGH~lGAaGaveai~~~ 353 (412)
T COG0304 314 SLAIKRVFGEHAKSLPVSSTKSLTGHTLGAAGAVEAIISL 353 (412)
T ss_pred HHHHHHHhcccccCceeeecccccccChhhHHHHHHHHHH
Confidence 3455555544321 2334689999988665554433
No 285
>PRK13018 cell division protein FtsZ; Provisional
Probab=31.71 E-value=77 Score=26.37 Aligned_cols=39 Identities=13% Similarity=0.203 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHHHhc
Q 038038 55 FNAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIVVQN 96 (150)
Q Consensus 55 ~~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~~~~ 96 (150)
.++..+.|++.++ +...++.=|||||+..+-++..+.+.
T Consensus 99 aee~~d~I~~~le---~~D~vfI~aGLGGGTGSGaapvIa~i 137 (378)
T PRK13018 99 AEESRDEIKEVLK---GADLVFVTAGMGGGTGTGAAPVVAEI 137 (378)
T ss_pred HHHHHHHHHHHhc---CCCEEEEEeeccCcchhhHHHHHHHH
Confidence 3344445555553 34568888999998888888766543
No 286
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=31.49 E-value=1.1e+02 Score=24.53 Aligned_cols=41 Identities=15% Similarity=0.093 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHHHh
Q 038038 52 RWVFNAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIVVQ 95 (150)
Q Consensus 52 ~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~~~ 95 (150)
+...++..+.|++.++. ...++.=|||||+..+-++..+.+
T Consensus 68 ~~~a~e~~~~I~~~le~---~D~v~i~aglGGGTGSG~ap~ia~ 108 (303)
T cd02191 68 AEAAEEVQEAIDNIPVH---VDMVFITAGLGGGTGTGGAPVVAE 108 (303)
T ss_pred HHHHHHHHHHHHHHHcC---CCEEEEEeccCCccchhHHHHHHH
Confidence 34455556666666654 336777899999988888887755
No 287
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=31.31 E-value=84 Score=20.71 Aligned_cols=34 Identities=12% Similarity=0.092 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhhC-CCceEEEeeechhHHHHHHHHHHHHh
Q 038038 57 AECEFLRGLVDRN-PNYTLTFAGHSLGAGVVALLVLIVVQ 95 (150)
Q Consensus 57 ~~~~~l~~~~~~~-~~~~i~itGHSLGGalA~l~a~~~~~ 95 (150)
.+...|.++.+.. |+.+|++|| ++|....-.+.+
T Consensus 54 k~~~~i~~l~~~~~~~~~ivv~G-----C~aq~~~~~l~~ 88 (98)
T PF00919_consen 54 KSRNRIRKLKKLKKPGAKIVVTG-----CMAQRYGEELKK 88 (98)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEe-----CccccChHHHHh
Confidence 3566667777666 888999865 666666655544
No 288
>PLN02154 carbonic anhydrase
Probab=31.08 E-value=75 Score=25.53 Aligned_cols=32 Identities=25% Similarity=0.206 Sum_probs=23.1
Q ss_pred HHHHHHHHhhCCCceEEEeeechhHHHHHHHH
Q 038038 59 CEFLRGLVDRNPNYTLTFAGHSLGAGVVALLV 90 (150)
Q Consensus 59 ~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a 90 (150)
...|+.+.....-..|+|+|||-=||+..++.
T Consensus 153 ~aslEyAv~~L~v~~IvV~GHs~CGAV~Aal~ 184 (290)
T PLN02154 153 NSALEFAVTTLQVENIIVMGHSNCGGIAALMS 184 (290)
T ss_pred hhHHHHHHHHhCCCEEEEecCCCchHHHHHHh
Confidence 34566666554556899999998888877664
No 289
>PRK13320 pantothenate kinase; Reviewed
Probab=30.93 E-value=85 Score=24.26 Aligned_cols=34 Identities=9% Similarity=0.167 Sum_probs=21.6
Q ss_pred eeeHhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEee
Q 038038 42 YVHNGSLKAARWVFNAECEFLRGLVDRNPNYTLTFAG 78 (150)
Q Consensus 42 ~vH~Gf~~~~~~~~~~~~~~l~~~~~~~~~~~i~itG 78 (150)
.++.|.+.+.... +...++++.+++++..+++||
T Consensus 178 ai~sG~~~~~~~~---i~~~i~~~~~~~~~~~vi~TG 211 (244)
T PRK13320 178 CIRSGVVWGCVAE---IEGLIEAYKSKLPELLVILTG 211 (244)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHcCCCEEEEEC
Confidence 4566766653333 445556666666667899997
No 290
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=30.87 E-value=94 Score=23.87 Aligned_cols=37 Identities=11% Similarity=-0.022 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhh-CCCceEEEeeechhHHHHHHHHH
Q 038038 55 FNAECEFLRGLVDR-NPNYTLTFAGHSLGAGVVALLVL 91 (150)
Q Consensus 55 ~~~~~~~l~~~~~~-~~~~~i~itGHSLGGalA~l~a~ 91 (150)
.++..+.|+-+.++ -++-+|-++|.|.+|..+.++|.
T Consensus 83 ~~D~~d~I~W~~~Qpws~G~VGm~G~SY~G~~q~~~A~ 120 (272)
T PF02129_consen 83 AQDGYDTIEWIAAQPWSNGKVGMYGISYGGFTQWAAAA 120 (272)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEEEETHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCCCeEEeeccCHHHHHHHHHHh
Confidence 34566777777665 34569999999999998777766
No 291
>cd00884 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=30.40 E-value=77 Score=23.59 Aligned_cols=32 Identities=25% Similarity=0.188 Sum_probs=22.8
Q ss_pred HHHHHHHHhhCCCceEEEeeechhHHHHHHHH
Q 038038 59 CEFLRGLVDRNPNYTLTFAGHSLGAGVVALLV 90 (150)
Q Consensus 59 ~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a 90 (150)
...|+.+.....-..|+|+|||-=||+...+.
T Consensus 74 ~asleyav~~l~v~~ivV~GH~~Cgav~Aa~~ 105 (190)
T cd00884 74 SAAIEYAVAVLKVEHIVVCGHSDCGGIRALLS 105 (190)
T ss_pred hhhHHHHHHHhCCCEEEEeCCCcchHHHHHhc
Confidence 34566555554556899999998888777654
No 292
>cd01468 trunk_domain trunk domain. COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is known as the trunk domain and has an alpha/beta vWA fold and forms the dimer interface. Some members of this family possess a partial MIDAS motif that is a characteristic feature of most vWA domain proteins.
Probab=30.33 E-value=1.1e+02 Score=23.31 Aligned_cols=70 Identities=13% Similarity=-0.008 Sum_probs=36.1
Q ss_pred eHhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHHHhcccccCCCCCCceEEEEecCCCCCC
Q 038038 44 HNGSLKAARWVFNAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIVVQNLDKLGNIERNKIRCFAIAPTKCMS 120 (150)
Q Consensus 44 H~Gf~~~~~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~P~v~~ 120 (150)
+.+++.-.....+.+.+.++++.+......-.-.+.++|.|+-....++-... ...+|-+++-|+|..|-
T Consensus 81 ~~~~l~~~~e~~~~i~~~l~~l~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~-------~gGkI~~f~sg~pt~Gp 150 (239)
T cd01468 81 PDRFLVPLSECKKVIHDLLEQLPPMFWPVPTHRPERCLGPALQAAFLLLKGTF-------AGGRIIVFQGGLPTVGP 150 (239)
T ss_pred cCceeeeHHHHHHHHHHHHHhhhhhccccCCCCCcccHHHHHHHHHHHHhhcC-------CCceEEEEECCCCCCCC
Confidence 44554443333444555555555433211122356788877665554432220 02477777778887663
No 293
>PRK13331 pantothenate kinase; Reviewed
Probab=30.30 E-value=87 Score=24.49 Aligned_cols=45 Identities=13% Similarity=0.129 Sum_probs=28.1
Q ss_pred eeeHhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHHH
Q 038038 42 YVHNGSLKAARWVFNAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIVV 94 (150)
Q Consensus 42 ~vH~Gf~~~~~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~~ 94 (150)
.+++|.+.+.... +...++++.+++++.++++||= .|.+++..+.
T Consensus 178 ai~sGi~~g~~g~---i~~~i~~~~~~~~~~~vi~TGG-----~a~~l~~~~~ 222 (251)
T PRK13331 178 AIQSGVIYTILAG---LRDFIEDWLSLFPDGKIVLTGG-----DGELLHNYLQ 222 (251)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHcCCCEEEEECC-----CHHHHHHHhh
Confidence 5677776664443 4555666666666788999873 4555555543
No 294
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=30.13 E-value=48 Score=26.46 Aligned_cols=36 Identities=17% Similarity=0.198 Sum_probs=25.9
Q ss_pred HhHHHHHHHHHHH--------------HHHHHHHHHhhCCCceEEEeeec
Q 038038 45 NGSLKAARWVFNA--------------ECEFLRGLVDRNPNYTLTFAGHS 80 (150)
Q Consensus 45 ~Gf~~~~~~~~~~--------------~~~~l~~~~~~~~~~~i~itGHS 80 (150)
..|++--..+|++ +-+.+.++++++..-=|+||||=
T Consensus 114 ~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~~PDIlViTGHD 163 (283)
T TIGR02855 114 PEYLRKCLKLYKKIGVPVVGIHCKEKEMPEKVLDLIEEVRPDILVITGHD 163 (283)
T ss_pred HHHHHHHHHHHHHhCCceEEEEecchhchHHHHHHHHHhCCCEEEEeCch
Confidence 4466666666655 36678888888866689999994
No 295
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=30.03 E-value=1.4e+02 Score=25.59 Aligned_cols=42 Identities=24% Similarity=0.453 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHhhCCCceEEEe---e--echhHHHHHHHHHH
Q 038038 51 ARWVFNAECEFLRGLVDRNPNYTLTFA---G--HSLGAGVVALLVLI 92 (150)
Q Consensus 51 ~~~~~~~~~~~l~~~~~~~~~~~i~it---G--HSLGGalA~l~a~~ 92 (150)
.+....++.+.++..+.+.++.+|+|+ | .|.|=++|.|+..+
T Consensus 356 LR~~LP~i~~fv~~~L~~~~~~~iLV~C~sGkDlSVgVaLaILc~~F 402 (451)
T PF04179_consen 356 LRKALPKICSFVRSHLSSDPGKPILVCCDSGKDLSVGVALAILCKLF 402 (451)
T ss_pred HHHHHHHHHHHHHHHhcccCCCcEEEEcCCcchHHHHHHHHHHHHhc
Confidence 444556677777777766667889998 7 66776666666554
No 296
>PLN00416 carbonate dehydratase
Probab=29.96 E-value=78 Score=24.90 Aligned_cols=32 Identities=19% Similarity=0.134 Sum_probs=22.9
Q ss_pred HHHHHHHHhhCCCceEEEeeechhHHHHHHHH
Q 038038 59 CEFLRGLVDRNPNYTLTFAGHSLGAGVVALLV 90 (150)
Q Consensus 59 ~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a 90 (150)
...|+.+.....-..|+|+|||-=||+..++.
T Consensus 127 ~asLEyAv~~L~V~~IVV~GHs~CGaV~Aa~~ 158 (258)
T PLN00416 127 GAAVEYAVVHLKVENILVIGHSCCGGIKGLMS 158 (258)
T ss_pred hhHHHHHHHHhCCCEEEEecCCCchHHHHHHh
Confidence 34566666554556899999999888766654
No 297
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=29.78 E-value=2.1e+02 Score=22.98 Aligned_cols=51 Identities=12% Similarity=0.090 Sum_probs=31.9
Q ss_pred HHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHHHhcccccCCCCCCceEEEEecCCCC
Q 038038 58 ECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIVVQNLDKLGNIERNKIRCFAIAPTKC 118 (150)
Q Consensus 58 ~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~P~v 118 (150)
.....+++++.+|+.+.+++. +-.++.+.+-++. .. | . .++.+++|+.|..
T Consensus 196 a~~~~~~lL~~~pdi~aI~~~-~~~~~~Ga~~Al~--~~----g-~--~~v~VvG~D~~~~ 246 (336)
T PRK15408 196 SLQTAEGILKAYPDLDAIIAP-DANALPAAAQAAE--NL----K-R--DKVAIVGFSTPNV 246 (336)
T ss_pred HHHHHHHHHHHCCCCcEEEEC-CCccHHHHHHHHH--hC----C-C--CCEEEEEeCCcHH
Confidence 455677888889988888876 3333334344432 21 2 1 3789999998753
No 298
>PRK10510 putative outer membrane lipoprotein; Provisional
Probab=29.42 E-value=92 Score=23.71 Aligned_cols=51 Identities=12% Similarity=0.321 Sum_probs=31.6
Q ss_pred HHHHHhhCCCceEEEeeec--hhHH---------HHHHHHHHHHhcccccCCCCCCceEEEEecCCC
Q 038038 62 LRGLVDRNPNYTLTFAGHS--LGAG---------VVALLVLIVVQNLDKLGNIERNKIRCFAIAPTK 117 (150)
Q Consensus 62 l~~~~~~~~~~~i~itGHS--LGGa---------lA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~P~ 117 (150)
+-..++++|+.+|.|.||. .|.. -|.-+.-+|... +++..++.+..||.-.
T Consensus 134 ia~~L~~~p~~~I~I~GhTD~~G~~~~N~~LS~~RA~aV~~~L~~~-----Gi~~~ri~~~G~G~~~ 195 (219)
T PRK10510 134 VAMVLKEYPKTAVNVVGYTDSTGSHDLNMRLSQQRADSVASALITQ-----GVDASRIRTQGMGPAN 195 (219)
T ss_pred HHHHHHhCCCceEEEEEecCCCCChHHHHHHHHHHHHHHHHHHHHc-----CCChhhEEEEEEcCCC
Confidence 3445567888899999995 3322 233333333332 3667789999998743
No 299
>PLN03006 carbonate dehydratase
Probab=29.24 E-value=76 Score=25.64 Aligned_cols=32 Identities=25% Similarity=0.176 Sum_probs=23.2
Q ss_pred HHHHHHHHhhCCCceEEEeeechhHHHHHHHH
Q 038038 59 CEFLRGLVDRNPNYTLTFAGHSLGAGVVALLV 90 (150)
Q Consensus 59 ~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a 90 (150)
...|+.+.....=..|+|+|||-=||+..++.
T Consensus 159 ~aSLEYAV~~L~V~~IVV~GHs~CGaV~Aal~ 190 (301)
T PLN03006 159 KAALEFSVNTLNVENILVIGHSRCGGIQALMK 190 (301)
T ss_pred hhhHHHHHHHhCCCEEEEecCCCchHHHHHhh
Confidence 45666666654555799999999888886554
No 300
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=28.53 E-value=55 Score=24.47 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=17.2
Q ss_pred HHHHHHHHhhCCCceEEEeee
Q 038038 59 CEFLRGLVDRNPNYTLTFAGH 79 (150)
Q Consensus 59 ~~~l~~~~~~~~~~~i~itGH 79 (150)
.+.++++++++++.+.+++||
T Consensus 137 ~~~~~~ll~~~~~V~~v~~GH 157 (214)
T cd07399 137 QQIWDKLVKKNDNVFMVLSGH 157 (214)
T ss_pred HHHHHHHHhCCCCEEEEEccc
Confidence 345777788898899999998
No 301
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=28.52 E-value=65 Score=25.34 Aligned_cols=12 Identities=33% Similarity=0.653 Sum_probs=10.4
Q ss_pred eEEEeeechhHH
Q 038038 73 TLTFAGHSLGAG 84 (150)
Q Consensus 73 ~i~itGHSLGGa 84 (150)
.|++.|||-|-.
T Consensus 108 ~vVL~GhSTGcQ 119 (299)
T KOG4840|consen 108 DVVLVGHSTGCQ 119 (299)
T ss_pred ceEEEecCccch
Confidence 899999999943
No 302
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=27.95 E-value=63 Score=24.07 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=18.3
Q ss_pred HHHHHHHHhhCCCceEEEeeechhH
Q 038038 59 CEFLRGLVDRNPNYTLTFAGHSLGA 83 (150)
Q Consensus 59 ~~~l~~~~~~~~~~~i~itGHSLGG 83 (150)
.+.+.++++++++.+++++||.=..
T Consensus 170 ~~~~~~~l~~~~~v~~v~~GH~H~~ 194 (240)
T cd07402 170 AEALAAVLARHPNVRAILCGHVHRP 194 (240)
T ss_pred HHHHHHHHhcCCCeeEEEECCcCch
Confidence 4556666777777899999997554
No 303
>cd07212 Pat_PNPLA9 Patatin-like phospholipase domain containing protein 9. PNPLA9 is a Ca-independent phospholipase that catalyzes the hydrolysis of glycerophospholipids at the sn-2 position. PNPLA9 is also known as PLA2G6 (phospholipase A2 group VI) or iPLA2beta. PLA2G6 is stimulated by ATP and inhibited by bromoenol lactone (BEL). In humans, PNPLA9 in expressed ubiquitously and is involved in signal transduction, cell proliferation, and apoptotic cell death. Mutations in human PLA2G6 leads to infantile neuroaxonal dystrophy (INAD) and idiopathic neurodegeneration with brain iron accumulation (NBIA). This family includes PLA2G6 from Homo sapiens and Rattus norvegicus.
Probab=27.94 E-value=50 Score=26.48 Aligned_cols=18 Identities=28% Similarity=0.171 Sum_probs=16.1
Q ss_pred EEEeeechhHHHHHHHHH
Q 038038 74 LTFAGHSLGAGVVALLVL 91 (150)
Q Consensus 74 i~itGHSLGGalA~l~a~ 91 (150)
=+|+|-|.||-+|.+++.
T Consensus 34 D~i~GTStGgiIA~~la~ 51 (312)
T cd07212 34 DWIAGTSTGGILALALLH 51 (312)
T ss_pred cEEEeeChHHHHHHHHHc
Confidence 378999999999999886
No 304
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.91 E-value=1e+02 Score=24.85 Aligned_cols=33 Identities=21% Similarity=0.242 Sum_probs=23.2
Q ss_pred HHHHHHHHHhhCCCceEEEeeec--hhHHHHHHHH
Q 038038 58 ECEFLRGLVDRNPNYTLTFAGHS--LGAGVVALLV 90 (150)
Q Consensus 58 ~~~~l~~~~~~~~~~~i~itGHS--LGGalA~l~a 90 (150)
+.+.+++.--+..+++|.+.|.| +|..+|.++.
T Consensus 146 ii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~ 180 (301)
T PRK14194 146 CLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLL 180 (301)
T ss_pred HHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHH
Confidence 44444444334568999999986 8988888775
No 305
>PRK04946 hypothetical protein; Provisional
Probab=27.89 E-value=2.6e+02 Score=20.79 Aligned_cols=53 Identities=13% Similarity=0.095 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHHHhcccccCCCCCCceEEEEecCCCCCC
Q 038038 58 ECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIVVQNLDKLGNIERNKIRCFAIAPTKCMS 120 (150)
Q Consensus 58 ~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~P~v~~ 120 (150)
+..+|..+....-..-.+|.|+.. |.|-..+.-+|.+. +.|..|..++|.-|.
T Consensus 112 L~~fl~~a~~~g~r~v~IIHGkG~-gvLk~~V~~wL~q~---------~~V~af~~A~~~~GG 164 (181)
T PRK04946 112 LGALIAACRKEHVFCACVMHGHGK-HILKQQTPLWLAQH---------PDVMAFHQAPKEWGG 164 (181)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCCH-hHHHHHHHHHHcCC---------chhheeeccCcccCC
Confidence 455555555544445678888865 46666666666543 577778888877553
No 306
>cd01823 SEST_like SEST_like. A family of secreted SGNH-hydrolases similar to Streptomyces scabies esterase (SEST), a causal agent of the potato scab disease, which hydrolyzes a specific ester bond in suberin, a plant lipid. The tertiary fold of this enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxylic acid.
Probab=27.64 E-value=1.5e+02 Score=22.36 Aligned_cols=29 Identities=21% Similarity=0.140 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHhhCCCceEEEeee
Q 038038 51 ARWVFNAECEFLRGLVDRNPNYTLTFAGH 79 (150)
Q Consensus 51 ~~~~~~~~~~~l~~~~~~~~~~~i~itGH 79 (150)
...+.+.+...|+++.+..|+.+|+++|-
T Consensus 126 ~~~~~~~l~~~l~~i~~~~p~a~I~~~gy 154 (259)
T cd01823 126 LDEVGARLKAVLDRIRERAPNARVVVVGY 154 (259)
T ss_pred HHHHHHHHHHHHHHHHhhCCCcEEEEecc
Confidence 33445567888888888889999999993
No 307
>cd00307 RuBisCO_small_like Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit and related proteins. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits. This superfamily also contains specific proteins from cyanobacteria. CcmM plays a role in a CO2 concentrating mechanism, which cyanobacteria need to to overcome t
Probab=27.64 E-value=1.2e+02 Score=19.69 Aligned_cols=24 Identities=13% Similarity=0.153 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhhCCCceEEEeee
Q 038038 56 NAECEFLRGLVDRNPNYTLTFAGH 79 (150)
Q Consensus 56 ~~~~~~l~~~~~~~~~~~i~itGH 79 (150)
.++...|+.++++||+.=|-+.|-
T Consensus 45 ~~Vl~el~~c~~~~p~~YVRlig~ 68 (84)
T cd00307 45 AQVLAALEACLAEHPGEYVRLIGI 68 (84)
T ss_pred HHHHHHHHHHHHHCCCCeEEEEEE
Confidence 457788999999999988888773
No 308
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=27.62 E-value=48 Score=28.70 Aligned_cols=33 Identities=12% Similarity=0.273 Sum_probs=21.3
Q ss_pred ceEEEeeechhHHHHHHHHHHHHhcccccCCCCCCceEEE
Q 038038 72 YTLTFAGHSLGAGVVALLVLIVVQNLDKLGNIERNKIRCF 111 (150)
Q Consensus 72 ~~i~itGHSLGGalA~l~a~~~~~~~~~~g~~~~~~i~~~ 111 (150)
.+.|| +||++|+|+|..+.-.. +.+|..+|+++
T Consensus 3 ~~Ayi----vGsGiAsLAAAvfLIrD---a~~pg~nIhIl 35 (500)
T PF06100_consen 3 KKAYI----VGSGIASLAAAVFLIRD---AKMPGENIHIL 35 (500)
T ss_pred ceEEE----ECCCHHHHHhhhhhhcc---CCCCccceEEE
Confidence 45666 47889999888654321 34566677765
No 309
>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=27.55 E-value=3.5e+02 Score=22.22 Aligned_cols=92 Identities=11% Similarity=0.003 Sum_probs=53.9
Q ss_pred eeHhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeeechhH--------------HHHHHHHHHHHhcccccCCCCCCce
Q 038038 43 VHNGSLKAARWVFNAECEFLRGLVDRNPNYTLTFAGHSLGA--------------GVVALLVLIVVQNLDKLGNIERNKI 108 (150)
Q Consensus 43 vH~Gf~~~~~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGG--------------alA~l~a~~~~~~~~~~g~~~~~~i 108 (150)
+|+++-..+.-.++-.++++...++.-+..+|++++-++|= |+=.| +..+++ ++ -..++
T Consensus 136 v~~~m~vNylgt~~v~~~~~~~mk~~~~~g~I~~vsS~~a~~~i~GysaYs~sK~alrgL-a~~l~q---E~---i~~~v 208 (331)
T KOG1210|consen 136 VEKLMDVNYLGTVNVAKAAARAMKKREHLGRIILVSSQLAMLGIYGYSAYSPSKFALRGL-AEALRQ---EL---IKYGV 208 (331)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccccCcEEEEehhhhhhcCcccccccccHHHHHHHH-HHHHHH---HH---hhcce
Confidence 44444433333344456666665554444589999887761 11111 111122 11 13589
Q ss_pred EEEEecCCCCCCHHHHHh--cCCceeEEEeCCccc
Q 038038 109 RCFAIAPTKCMSLNLAVR--YEWIVNGCERKGKTE 141 (150)
Q Consensus 109 ~~~tFg~P~v~~~~~a~~--~~~~i~~iv~~~D~V 141 (150)
+++.+-||...++-|.++ .++..++++++.+-+
T Consensus 209 ~Vt~~~P~~~~tpGfE~En~tkP~~t~ii~g~ss~ 243 (331)
T KOG1210|consen 209 HVTLYYPPDTLTPGFERENKTKPEETKIIEGGSSV 243 (331)
T ss_pred EEEEEcCCCCCCCccccccccCchheeeecCCCCC
Confidence 999999999888866654 236888999988755
No 310
>PF06961 DUF1294: Protein of unknown function (DUF1294); InterPro: IPR010718 This family includes a number of hypothetical bacterial and archaeal proteins of unknown function.
Probab=27.18 E-value=66 Score=19.09 Aligned_cols=27 Identities=30% Similarity=0.304 Sum_probs=18.1
Q ss_pred CCceEEEeeechhHHHHHHHHHHHHhcc
Q 038038 70 PNYTLTFAGHSLGAGVVALLVLIVVQNL 97 (150)
Q Consensus 70 ~~~~i~itGHSLGGalA~l~a~~~~~~~ 97 (150)
|+..+++.. =+||.++.+++..+..++
T Consensus 23 pE~~L~~la-~~GG~~Ga~~~m~~frHK 49 (55)
T PF06961_consen 23 PEKTLLLLA-LLGGWPGALLGMYLFRHK 49 (55)
T ss_pred cHHHHHHHH-HHHhHHHHHHHHHHhccc
Confidence 443333333 379999999999887664
No 311
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=27.04 E-value=98 Score=22.80 Aligned_cols=40 Identities=15% Similarity=0.302 Sum_probs=24.5
Q ss_pred ceeeHhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeeechhHH
Q 038038 41 GYVHNGSLKAARWVFNAECEFLRGLVDRNPNYTLTFAGHSLGAG 84 (150)
Q Consensus 41 ~~vH~Gf~~~~~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGa 84 (150)
..+|..-... ...+.+.++++.+++|+.+|++|-.|--|.
T Consensus 24 iWiHa~SvGE----~~a~~~Li~~l~~~~p~~~illT~~T~tg~ 63 (186)
T PF04413_consen 24 IWIHAASVGE----VNAARPLIKRLRKQRPDLRILLTTTTPTGR 63 (186)
T ss_dssp EEEE-SSHHH----HHHHHHHHHHHTT---TS-EEEEES-CCHH
T ss_pred EEEEECCHHH----HHHHHHHHHHHHHhCCCCeEEEEecCCchH
Confidence 4677555443 345778888899999999999999866554
No 312
>smart00463 SMR Small MutS-related domain.
Probab=26.94 E-value=1.6e+02 Score=18.09 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=15.4
Q ss_pred HHHHHHHHHhhCC-CceEEEee---echhH
Q 038038 58 ECEFLRGLVDRNP-NYTLTFAG---HSLGA 83 (150)
Q Consensus 58 ~~~~l~~~~~~~~-~~~i~itG---HSLGG 83 (150)
+...|+++.+..- ..=.+||| ||++|
T Consensus 18 l~~~l~~~~~~~~~~~~~II~G~G~~s~~g 47 (80)
T smart00463 18 LDKFLNNARLKGLEQKLVIITGKGKHSLGG 47 (80)
T ss_pred HHHHHHHHHHcCCCceEEEEEcccCCCccc
Confidence 4455555555443 45677888 77743
No 313
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=26.74 E-value=1.3e+02 Score=26.12 Aligned_cols=14 Identities=36% Similarity=0.460 Sum_probs=11.9
Q ss_pred ceEEEeeechhHHH
Q 038038 72 YTLTFAGHSLGAGV 85 (150)
Q Consensus 72 ~~i~itGHSLGGal 85 (150)
.+|++.|+|-||+.
T Consensus 180 ~NVTl~GeSAGa~s 193 (491)
T COG2272 180 QNVTLFGESAGAAS 193 (491)
T ss_pred cceEEeeccchHHH
Confidence 58999999999763
No 314
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=26.63 E-value=2.7e+02 Score=20.74 Aligned_cols=45 Identities=18% Similarity=0.181 Sum_probs=28.1
Q ss_pred eEEEeeechhHHHHHHHHHHHHhcccccCCCCCCceEEEEecCCCC
Q 038038 73 TLTFAGHSLGAGVVALLVLIVVQNLDKLGNIERNKIRCFAIAPTKC 118 (150)
Q Consensus 73 ~i~itGHSLGGalA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~P~v 118 (150)
+|++-.-|.||+..........+...+.+ ...++++...|.+.+.
T Consensus 68 ~il~H~FSnGG~~~~~~l~~~~~~~~~~~-~~~~~i~g~I~DS~P~ 112 (240)
T PF05705_consen 68 PILFHSFSNGGSFLYSQLLEAYQSRKKFG-KLLPRIKGIIFDSCPG 112 (240)
T ss_pred CEEEEEEECchHHHHHHHHHHHHhccccc-ccccccceeEEeCCCC
Confidence 89999999999877666664443322211 1124477777777553
No 315
>TIGR00249 sixA phosphohistidine phosphatase SixA.
Probab=26.57 E-value=1.4e+02 Score=21.09 Aligned_cols=52 Identities=12% Similarity=0.100 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHHHhcccccCCCCCCceEEEEec
Q 038038 58 ECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIVVQNLDKLGNIERNKIRCFAIA 114 (150)
Q Consensus 58 ~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~~~~~~~~g~~~~~~i~~~tFg 114 (150)
+.+.+++..++ ...+++|+|| +..+..++...+.... .. .++...+-++.|.
T Consensus 88 ~~~~l~~~~~~-~~~~vliVgH--~P~i~~l~~~l~~~~~-~~-~~~~~~~~~l~~~ 139 (152)
T TIGR00249 88 VSDYLEALTNE-GVASVLLVSH--LPLVGYLVAELCPGEN-PI-MFTTGAIASLLWD 139 (152)
T ss_pred HHHHHHHHHhc-CCCEEEEEeC--CCCHHHHHHHHhCCCC-CC-cCcceeEEEEEEe
Confidence 33444443332 2358999999 6677777777764311 11 2445566677664
No 316
>cd07206 Pat_TGL3-4-5_SDP1 Triacylglycerol lipase 3, 4, and 5 and Sugar-Dependent 1 lipase. Triacylglycerol lipases are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This family includes subfamilies of proteins: TGL3, TGL4, TGL5, and SDP1.
Probab=26.24 E-value=1.6e+02 Score=23.69 Aligned_cols=17 Identities=47% Similarity=0.458 Sum_probs=15.3
Q ss_pred EEeeechhHHHHHHHHH
Q 038038 75 TFAGHSLGAGVVALLVL 91 (150)
Q Consensus 75 ~itGHSLGGalA~l~a~ 91 (150)
+++|-|.|+.+|.+++.
T Consensus 100 ~i~GtSaGAi~aa~~~~ 116 (298)
T cd07206 100 VISGSSAGAIVAALLGT 116 (298)
T ss_pred EEEEEcHHHHHHHHHHc
Confidence 59999999999998886
No 317
>PLN02752 [acyl-carrier protein] S-malonyltransferase
Probab=26.13 E-value=51 Score=26.52 Aligned_cols=16 Identities=31% Similarity=0.374 Sum_probs=11.5
Q ss_pred EEeeechhHHHHHHHH
Q 038038 75 TFAGHSLGAGVVALLV 90 (150)
Q Consensus 75 ~itGHSLGGalA~l~a 90 (150)
.++|||+|=-.|..++
T Consensus 127 ~~~GHSlGE~aA~~~A 142 (343)
T PLN02752 127 VCAGLSLGEYTALVFA 142 (343)
T ss_pred eeeeccHHHHHHHHHh
Confidence 5799999975555544
No 318
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=26.12 E-value=1.4e+02 Score=22.22 Aligned_cols=10 Identities=20% Similarity=0.365 Sum_probs=5.7
Q ss_pred EEEEEcCCCC
Q 038038 10 IVLAIRGLNL 19 (150)
Q Consensus 10 ivva~RGT~~ 19 (150)
.+|-+.|+-.
T Consensus 3 ~vi~i~g~i~ 12 (207)
T TIGR00706 3 AILPVSGAIA 12 (207)
T ss_pred EEEEEEEEEe
Confidence 3556666653
No 319
>PF00101 RuBisCO_small: Ribulose bisphosphate carboxylase, small chain; InterPro: IPR000894 RuBisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) is a bifunctional enzyme that catalyses both the carboxylation and oxygenation of ribulose-1,5-bisphosphate (RuBP) [], thus fixing carbon dioxide as the first step of the Calvin cycle. RuBisCO is the major protein in the stroma of chloroplasts, and in higher plants exists as a complex of 8 large and 8 small subunits. The function of the small subunit is unknown []. While the large subunit is coded for by a single gene, the small subunit is coded for by several different genes, which are distributed in a tissue specific manner. They are transcriptionally regulated by light receptor phytochrome [], which results in RuBisCO being more abundant during the day when it is required. The RuBisCo small subunit consists of a central four-stranded beta-sheet, with two helices packed against it [].; PDB: 1BWV_W 1IWA_P 3AXM_X 1WDD_S 3AXK_T 1IR2_K 1RBL_N 1UZH_J 1RSC_P 1UW9_C ....
Probab=25.80 E-value=1.3e+02 Score=20.06 Aligned_cols=23 Identities=13% Similarity=0.169 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhhCCCceEEEee
Q 038038 56 NAECEFLRGLVDRNPNYTLTFAG 78 (150)
Q Consensus 56 ~~~~~~l~~~~~~~~~~~i~itG 78 (150)
.++...|+.++++||+.-|-+.|
T Consensus 59 ~~Vl~el~~c~~~~p~~yVRlig 81 (99)
T PF00101_consen 59 AQVLAELEACLAEHPGEYVRLIG 81 (99)
T ss_dssp HHHHHHHHHHHHHSTTSEEEEEE
T ss_pred HHHHHHHHHHHHhCCCceEEEEE
Confidence 45778899999999998888877
No 320
>PF01676 Metalloenzyme: Metalloenzyme superfamily; InterPro: IPR006124 This domain unites alkaline phosphatase, N-acetylgalactosamine-4-sulphatase, and cerebroside sulphatase, enzymes with known three-dimensional structures, with phosphopentomutase, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, phosphoglycerol transferase, phosphonate monoesterase, streptomycin-6-phosphate phosphatase, alkaline phosphodiesterase/nucleotide pyrophosphatase PC-1, and several closely related sulphatases. This domain is also related to alkaline phosphatase IPR001952 from INTERPRO []. The most conserved residues are probably involved in metal binding and catalysis.; GO: 0003824 catalytic activity, 0046872 metal ion binding; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3UN5_F 3UN3_B 3M8Y_C 3UO0_B 3UN2_B 3UNY_E ....
Probab=25.76 E-value=1.3e+02 Score=23.13 Aligned_cols=40 Identities=20% Similarity=0.172 Sum_probs=26.4
Q ss_pred eeeHhHHHHHHHHHHHHHHHHHHHHhh--CCCceEEEee-ech
Q 038038 42 YVHNGSLKAARWVFNAECEFLRGLVDR--NPNYTLTFAG-HSL 81 (150)
Q Consensus 42 ~vH~Gf~~~~~~~~~~~~~~l~~~~~~--~~~~~i~itG-HSL 81 (150)
.-|.|-++.+....+.+.+.|.++++. .++..++||+ |+-
T Consensus 154 ~GH~~~~~~~~~~ie~~D~~l~~l~~~~~~~~~~liiTaDHg~ 196 (252)
T PF01676_consen 154 AGHRGDPEAYIEAIERIDRFLGRLLEALDKEDDLLIITADHGN 196 (252)
T ss_dssp HHTTT-HHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEESSBS
T ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCC
Confidence 457777777766666666666666653 3677899998 853
No 321
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=25.58 E-value=2.6e+02 Score=20.06 Aligned_cols=51 Identities=14% Similarity=0.216 Sum_probs=37.2
Q ss_pred CCceEEEeeechhHHHHHHHHHHHHhcccccCCCCCCceEEEEecCCCCCCHHHHHhcC
Q 038038 70 PNYTLTFAGHSLGAGVVALLVLIVVQNLDKLGNIERNKIRCFAIAPTKCMSLNLAVRYE 128 (150)
Q Consensus 70 ~~~~i~itGHSLGGalA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~P~v~~~~~a~~~~ 128 (150)
+..-++++|--=-|+=+..+|-++.+. | .++.++.+.++.-.+.++..+++
T Consensus 25 ~~~v~il~G~GnNGgDgl~~AR~L~~~----G----~~V~v~~~~~~~~~~~~~~~~~~ 75 (169)
T PF03853_consen 25 GPRVLILCGPGNNGGDGLVAARHLANR----G----YNVTVYLVGPPEKLSEDAKQQLE 75 (169)
T ss_dssp T-EEEEEE-SSHHHHHHHHHHHHHHHT----T----CEEEEEEEESSSSTSHHHHHHHH
T ss_pred CCeEEEEECCCCChHHHHHHHHHHHHC----C----CeEEEEEEeccccCCHHHHHHHH
Confidence 345678889777788888888888764 2 57888889888888877666543
No 322
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=25.42 E-value=1.7e+02 Score=24.34 Aligned_cols=30 Identities=23% Similarity=0.155 Sum_probs=21.2
Q ss_pred HHHHhhCCCceEE-EeeechhHHHHHHHHHH
Q 038038 63 RGLVDRNPNYTLT-FAGHSLGAGVVALLVLI 92 (150)
Q Consensus 63 ~~~~~~~~~~~i~-itGHSLGGalA~l~a~~ 92 (150)
+.+++...-.+|. ++|-||||..|.--+..
T Consensus 137 ~~ll~~LGI~~l~avvGgSmGGMqaleWa~~ 167 (368)
T COG2021 137 RLLLDALGIKKLAAVVGGSMGGMQALEWAIR 167 (368)
T ss_pred HHHHHhcCcceEeeeeccChHHHHHHHHHHh
Confidence 5555555556676 89999999977665553
No 323
>cd00883 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=25.25 E-value=1.1e+02 Score=22.42 Aligned_cols=33 Identities=27% Similarity=0.154 Sum_probs=23.0
Q ss_pred HHHHHHHHHhhCCCceEEEeeechhHHHHHHHH
Q 038038 58 ECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLV 90 (150)
Q Consensus 58 ~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a 90 (150)
....|+.+.....-..|+|+|||-=||+.....
T Consensus 67 ~~asleyAv~~L~v~~IvV~GHs~CGav~a~~~ 99 (182)
T cd00883 67 CLSVLQYAVDVLKVKHIIVCGHYGCGGVKAALT 99 (182)
T ss_pred hhhhHHHHHHhcCCCEEEEecCCCchHHHHHHc
Confidence 345566665554456899999998888776654
No 324
>KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=25.05 E-value=1.2e+02 Score=26.04 Aligned_cols=51 Identities=20% Similarity=0.116 Sum_probs=30.9
Q ss_pred eeeHhHHHHHHHHHHHHHHHHHHHHhhC--CCceEEEeeechhHHHHHHHHHHHHhcc
Q 038038 42 YVHNGSLKAARWVFNAECEFLRGLVDRN--PNYTLTFAGHSLGAGVVALLVLIVVQNL 97 (150)
Q Consensus 42 ~vH~Gf~~~~~~~~~~~~~~l~~~~~~~--~~~~i~itGHSLGGalA~l~a~~~~~~~ 97 (150)
..|-||+.+.+-+.+ .-..|..+++.. ....|+..|-|.|| ++|.+++.+.
T Consensus 136 ~~hlgyLtseQALAD-fA~ll~~lK~~~~a~~~pvIafGGSYGG----MLaAWfRlKY 188 (492)
T KOG2183|consen 136 ARHLGYLTSEQALAD-FAELLTFLKRDLSAEASPVIAFGGSYGG----MLAAWFRLKY 188 (492)
T ss_pred hhhhccccHHHHHHH-HHHHHHHHhhccccccCcEEEecCchhh----HHHHHHHhcC
Confidence 468888877554432 223344443331 23569999999999 4666776653
No 325
>KOG0235 consensus Phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=24.90 E-value=1.5e+02 Score=22.67 Aligned_cols=37 Identities=19% Similarity=0.133 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHhh--CCCceEEEeee--chhHHHHHHH
Q 038038 53 WVFNAECEFLRGLVDR--NPNYTLTFAGH--SLGAGVVALL 89 (150)
Q Consensus 53 ~~~~~~~~~l~~~~~~--~~~~~i~itGH--SLGGalA~l~ 89 (150)
.+.+++.+++++.... ..++.|+|++| ||-|-+..+-
T Consensus 136 ~~~~R~~~~~~e~i~~~~~~gk~Vli~aHGnsLR~i~~~l~ 176 (214)
T KOG0235|consen 136 DCLDRLLPFWNEEIAKESKEGKNVLIVAHGNSLRAIVKHLE 176 (214)
T ss_pred HHHHHHHHHHHHhhhhhhcCCcEEEEEcCcHHHHHHHHHHh
Confidence 3445555666654433 35689999999 6665555444
No 326
>PF02633 Creatininase: Creatinine amidohydrolase; InterPro: IPR003785 This family includes the enzymes creatininase and 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase, also known as formamide hydrolase. Creatinase or creatinine amidohydrolase (3.5.2.10 from EC) catalyses the hydrolysis of creatinine to creatine, which can then be metabolised to urea and sarcosine by creatinase (3.5.3.3 from EC). Creatininase is a member of the urease-related amidohydrolase superfamily []. Formamide hydrolase catalyzes the hydrolysis of the formamide of 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-monophosphate (FAPy) to form 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (APy) (3.5.1.102 from EC). ; PDB: 3A6K_F 3A6F_A 3A6D_B 1J2U_B 3A6J_C 1J2T_A 3A6G_C 3A6H_F 1Q3K_E 3A6L_C ....
Probab=24.88 E-value=2e+02 Score=21.85 Aligned_cols=32 Identities=25% Similarity=0.350 Sum_probs=19.4
Q ss_pred HHHHHHHHHhhCCCceEEEeeechhHHHHHHHHH
Q 038038 58 ECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVL 91 (150)
Q Consensus 58 ~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~ 91 (150)
+.+.++.+....-..=|++.|| ||..+.+-..
T Consensus 88 l~di~~sl~~~Gf~~ivivngH--gGN~~~l~~~ 119 (237)
T PF02633_consen 88 LRDILRSLARHGFRRIVIVNGH--GGNIAALEAA 119 (237)
T ss_dssp HHHHHHHHHHHT--EEEEEESS--TTHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEECC--HhHHHHHHHH
Confidence 5566666665444455778999 8877555444
No 327
>PRK13318 pantothenate kinase; Reviewed
Probab=24.81 E-value=1.1e+02 Score=23.48 Aligned_cols=34 Identities=6% Similarity=0.042 Sum_probs=21.1
Q ss_pred eeeHhHHHHHHHHHHHHHHHHHHHHhhCC-CceEEEee
Q 038038 42 YVHNGSLKAARWVFNAECEFLRGLVDRNP-NYTLTFAG 78 (150)
Q Consensus 42 ~vH~Gf~~~~~~~~~~~~~~l~~~~~~~~-~~~i~itG 78 (150)
.++.|.+.+..... ...++++.++++ +.++++||
T Consensus 188 ai~~G~~~~~~~~i---~~~~~~~~~~~~~~~~vi~TG 222 (258)
T PRK13318 188 AMQSGIYYGYVGLV---EGIVKRIKEELGKDPKVIATG 222 (258)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHhCCCCEEEEEC
Confidence 56778777654443 444444555543 67899997
No 328
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=24.79 E-value=2.7e+02 Score=20.02 Aligned_cols=19 Identities=16% Similarity=0.165 Sum_probs=10.6
Q ss_pred CceEEEEecCCCCCCHHHHHh
Q 038038 106 NKIRCFAIAPTKCMSLNLAVR 126 (150)
Q Consensus 106 ~~i~~~tFg~P~v~~~~~a~~ 126 (150)
+++-.++.|+|+ .+.|+.+
T Consensus 102 pdiv~vglG~Pk--QE~~~~~ 120 (172)
T PF03808_consen 102 PDIVFVGLGAPK--QERWIAR 120 (172)
T ss_pred CCEEEEECCCCH--HHHHHHH
Confidence 566667777773 3344443
No 329
>COG2845 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.77 E-value=1.4e+02 Score=24.56 Aligned_cols=26 Identities=19% Similarity=0.160 Sum_probs=22.2
Q ss_pred CceEEEeeechhHHHHHHHHHHHHhc
Q 038038 71 NYTLTFAGHSLGAGVVALLVLIVVQN 96 (150)
Q Consensus 71 ~~~i~itGHSLGGalA~l~a~~~~~~ 96 (150)
..+|+++|-||++++|--+-.-+.++
T Consensus 116 a~kvLvvGDslm~gla~gl~~al~t~ 141 (354)
T COG2845 116 ADKVLVVGDSLMQGLAEGLDKALATS 141 (354)
T ss_pred CCEEEEechHHhhhhHHHHHHHhccC
Confidence 35899999999999999888877664
No 330
>PF13479 AAA_24: AAA domain
Probab=24.75 E-value=1.3e+02 Score=22.43 Aligned_cols=32 Identities=16% Similarity=0.169 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCceEEEeeec
Q 038038 48 LKAARWVFNAECEFLRGLVDRNPNYTLTFAGHS 80 (150)
Q Consensus 48 ~~~~~~~~~~~~~~l~~~~~~~~~~~i~itGHS 80 (150)
.+++..+.+.+...+++++.. .+..|++|+|+
T Consensus 105 ~~~yg~~~~~~~~~i~~l~~~-~~~~VI~tah~ 136 (213)
T PF13479_consen 105 GKGYGELQQEFMRFIDKLLNA-LGKNVIFTAHA 136 (213)
T ss_pred cchHHHHHHHHHHHHHHHHHH-CCCcEEEEEEE
Confidence 444444455566666655542 45789999995
No 331
>PRK13327 pantothenate kinase; Reviewed
Probab=24.39 E-value=1.2e+02 Score=23.45 Aligned_cols=34 Identities=18% Similarity=-0.028 Sum_probs=21.3
Q ss_pred eeeHhHHHHHHHHHHHHHHHHHHHHhhCC-CceEEEee
Q 038038 42 YVHNGSLKAARWVFNAECEFLRGLVDRNP-NYTLTFAG 78 (150)
Q Consensus 42 ~vH~Gf~~~~~~~~~~~~~~l~~~~~~~~-~~~i~itG 78 (150)
.+++|.+.+.... +...++++.++++ +.++++||
T Consensus 174 ai~sG~~~~~~~~---I~~~i~~~~~~~~~~~~vilTG 208 (242)
T PRK13327 174 ALTSGCDGAAVAL---IERSLQHAHRSLGQPVRLLVHG 208 (242)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHhCCCCEEEEEC
Confidence 5777877664443 4444555555553 57899987
No 332
>cd03527 RuBisCO_small Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits.
Probab=24.14 E-value=1.4e+02 Score=19.94 Aligned_cols=24 Identities=8% Similarity=0.076 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhhCCCceEEEeee
Q 038038 56 NAECEFLRGLVDRNPNYTLTFAGH 79 (150)
Q Consensus 56 ~~~~~~l~~~~~~~~~~~i~itGH 79 (150)
.++...|++++++||+.=|-+.|-
T Consensus 60 ~~Vl~ei~~C~~~~p~~YVRliG~ 83 (99)
T cd03527 60 AQVLREIEACRKAYPDHYVRVVGF 83 (99)
T ss_pred HHHHHHHHHHHHHCCCCeEEEEEE
Confidence 457788999999999988888873
No 333
>PF06866 DUF1256: Protein of unknown function (DUF1256); InterPro: IPR009665 This family consists of several uncharacterised bacterial proteins, which seem to be specific to the orders Clostridia and Bacillales. Family members are typically around 180 residues in length. The function of this family is unknown.
Probab=23.91 E-value=2.9e+02 Score=20.25 Aligned_cols=40 Identities=20% Similarity=0.263 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhh-CCCceEEEee--echhHHHHHHHHHHHHhc
Q 038038 57 AECEFLRGLVDR-NPNYTLTFAG--HSLGAGVVALLVLIVVQN 96 (150)
Q Consensus 57 ~~~~~l~~~~~~-~~~~~i~itG--HSLGGalA~l~a~~~~~~ 96 (150)
++...+.+.+.. ..+.-+++.| -|-|=+++.|++.++++.
T Consensus 11 ~l~~~L~~~~~~~~~~iv~lCIGTDRstGDsLGPLVGt~L~~~ 53 (163)
T PF06866_consen 11 KLANFLYSLIPKHNREIVFLCIGTDRSTGDSLGPLVGTKLKEM 53 (163)
T ss_pred HHHHHHHHHHhhcCCCEEEEEECCCCCccccccchhhHHHHhc
Confidence 344455554443 4556677777 788888889999988765
No 334
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are 60% identical to each other. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologous to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE
Probab=23.82 E-value=76 Score=25.43 Aligned_cols=19 Identities=32% Similarity=0.211 Sum_probs=16.4
Q ss_pred EEEeeechhHHHHHHHHHH
Q 038038 74 LTFAGHSLGAGVVALLVLI 92 (150)
Q Consensus 74 i~itGHSLGGalA~l~a~~ 92 (150)
=.|+|=|.|+-+|.+.+.-
T Consensus 45 d~v~GtSaGAi~ga~ya~g 63 (306)
T cd07225 45 DMVGGTSIGAFIGALYAEE 63 (306)
T ss_pred CEEEEECHHHHHHHHHHcC
Confidence 4788999999999998875
No 335
>KOG2214 consensus Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=23.80 E-value=36 Score=29.53 Aligned_cols=21 Identities=29% Similarity=0.219 Sum_probs=18.0
Q ss_pred EEEeeechhHHHHHHHHHHHH
Q 038038 74 LTFAGHSLGAGVVALLVLIVV 94 (150)
Q Consensus 74 i~itGHSLGGalA~l~a~~~~ 94 (150)
=+|+|-|.||.+|++++..-.
T Consensus 204 ~IIsGsS~GaivAsl~~v~~~ 224 (543)
T KOG2214|consen 204 NIISGSSAGAIVASLVGVRSN 224 (543)
T ss_pred hhhcCCchhHHHHHHHhhcch
Confidence 478999999999999998543
No 336
>TIGR03712 acc_sec_asp2 accessory Sec system protein Asp2. This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=23.65 E-value=43 Score=28.94 Aligned_cols=48 Identities=10% Similarity=-0.038 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh--CCCceEEEeeechhHHHHHHHHHHHH
Q 038038 47 SLKAARWVFNAECEFLRGLVDR--NPNYTLTFAGHSLGAGVVALLVLIVV 94 (150)
Q Consensus 47 f~~~~~~~~~~~~~~l~~~~~~--~~~~~i~itGHSLGGalA~l~a~~~~ 94 (150)
||-.....-+.+.+.|++.++. +....+++.|-|||---|.-.+..+.
T Consensus 330 FYlGs~eyE~~I~~~I~~~L~~LgF~~~qLILSGlSMGTfgAlYYga~l~ 379 (511)
T TIGR03712 330 FYLGSDEYEQGIINVIQEKLDYLGFDHDQLILSGLSMGTFGALYYGAKLS 379 (511)
T ss_pred eeeCcHHHHHHHHHHHHHHHHHhCCCHHHeeeccccccchhhhhhcccCC
Confidence 4444344444577777777765 46678999999999776666666553
No 337
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=23.64 E-value=80 Score=24.44 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=18.3
Q ss_pred HHHHHHHhhCCCceEEEeeechhH
Q 038038 60 EFLRGLVDRNPNYTLTFAGHSLGA 83 (150)
Q Consensus 60 ~~l~~~~~~~~~~~i~itGHSLGG 83 (150)
+.+.++++++++.+++++||.=..
T Consensus 184 ~~l~~ll~~~~~v~~vl~GH~H~~ 207 (275)
T PRK11148 184 HELAEVLAKFPNVKAILCGHIHQE 207 (275)
T ss_pred HHHHHHHhcCCCceEEEecccChH
Confidence 456667777888889999997654
No 338
>PRK09330 cell division protein FtsZ; Validated
Probab=23.60 E-value=1.7e+02 Score=24.47 Aligned_cols=43 Identities=16% Similarity=0.220 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHHHh
Q 038038 50 AARWVFNAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIVVQ 95 (150)
Q Consensus 50 ~~~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~~~ 95 (150)
..+...++..+.|++.++ +...++.=|+|||+..+-++..+.+
T Consensus 79 ~G~~aaee~~e~I~~~l~---~~D~vfI~AGmGGGTGTGaapvIA~ 121 (384)
T PRK09330 79 VGRKAAEESREEIREALE---GADMVFITAGMGGGTGTGAAPVVAE 121 (384)
T ss_pred HHHHHHHHHHHHHHHHHc---CCCEEEEEecCCCcccHHHHHHHHH
Confidence 334444555555665554 4567788899999888877776544
No 339
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=23.41 E-value=1.8e+02 Score=25.64 Aligned_cols=40 Identities=23% Similarity=0.444 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHhhCCCc-eEEEeeechhHHHHHHHHHHH
Q 038038 54 VFNAECEFLRGLVDRNPNY-TLTFAGHSLGAGVVALLVLIV 93 (150)
Q Consensus 54 ~~~~~~~~l~~~~~~~~~~-~i~itGHSLGGalA~l~a~~~ 93 (150)
+......++++..+.+|+. +..++|-..||=.++++|...
T Consensus 121 V~~ae~~Fv~~V~~~hp~~~kp~liGnCQgGWa~~mlAA~~ 161 (581)
T PF11339_consen 121 VMRAEAAFVEEVAERHPDAPKPNLIGNCQGGWAAMMLAALR 161 (581)
T ss_pred HHHHHHHHHHHHHHhCCCCCCceEEeccHHHHHHHHHHhcC
Confidence 3444567788888888876 999999999999988888864
No 340
>PRK13938 phosphoheptose isomerase; Provisional
Probab=23.38 E-value=2.6e+02 Score=20.84 Aligned_cols=25 Identities=8% Similarity=0.032 Sum_probs=22.1
Q ss_pred CCceEEEeeechhHHHHHHHHHHHH
Q 038038 70 PNYTLTFAGHSLGAGVVALLVLIVV 94 (150)
Q Consensus 70 ~~~~i~itGHSLGGalA~l~a~~~~ 94 (150)
.+.+|+++|..-.|.+|..++..|.
T Consensus 44 ~g~rI~i~G~G~S~~~A~~fa~~L~ 68 (196)
T PRK13938 44 AGARVFMCGNGGSAADAQHFAAELT 68 (196)
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHcC
Confidence 4579999999999999999999885
No 341
>PLN03019 carbonic anhydrase
Probab=23.34 E-value=1.1e+02 Score=25.08 Aligned_cols=32 Identities=19% Similarity=0.150 Sum_probs=22.9
Q ss_pred HHHHHHHHhhCCCceEEEeeechhHHHHHHHH
Q 038038 59 CEFLRGLVDRNPNYTLTFAGHSLGAGVVALLV 90 (150)
Q Consensus 59 ~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a 90 (150)
...|+.+.....-..|+|+|||-=||+..++.
T Consensus 202 ~aSIEYAV~~L~V~~IVV~GHs~CGaVkAal~ 233 (330)
T PLN03019 202 GAAIEYAVLHLKVENIVVIGHSACGGIKGLMS 233 (330)
T ss_pred chhHHHHHHHhCCCEEEEecCCCchHHHHHHh
Confidence 34566666554445899999998888777654
No 342
>cd07214 Pat17_isozyme_like Patatin-like phospholipase of plants. Pat17 is an isozyme of patatin cloned from Solanum cardiophyllum. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue, and Nu = nucleophile). Patatin-like phospholipase are included in this group. Members of this family have also been found in vertebrates.
Probab=23.30 E-value=1.6e+02 Score=23.93 Aligned_cols=17 Identities=35% Similarity=0.479 Sum_probs=15.6
Q ss_pred EEeeechhHHHHHHHHH
Q 038038 75 TFAGHSLGAGVVALLVL 91 (150)
Q Consensus 75 ~itGHSLGGalA~l~a~ 91 (150)
+|+|=|-||-+|.+++.
T Consensus 46 liaGTStGgiiA~~la~ 62 (349)
T cd07214 46 VIAGTSTGGLITAMLTA 62 (349)
T ss_pred EEeeCCHHHHHHHHHhc
Confidence 78999999999998886
No 343
>PRK12829 short chain dehydrogenase; Provisional
Probab=23.16 E-value=1.2e+02 Score=22.55 Aligned_cols=26 Identities=8% Similarity=0.130 Sum_probs=17.3
Q ss_pred hCCCceEEEeeechhHHHHHHHHHHHHh
Q 038038 68 RNPNYTLTFAGHSLGAGVVALLVLIVVQ 95 (150)
Q Consensus 68 ~~~~~~i~itGHSLGGalA~l~a~~~~~ 95 (150)
.-++.+++|||-| |+++..++..+.+
T Consensus 8 ~~~~~~vlItGa~--g~iG~~~a~~L~~ 33 (264)
T PRK12829 8 PLDGLRVLVTGGA--SGIGRAIAEAFAE 33 (264)
T ss_pred ccCCCEEEEeCCC--CcHHHHHHHHHHH
Confidence 3466788888875 5566666666654
No 344
>COG2840 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.00 E-value=2.1e+02 Score=21.38 Aligned_cols=39 Identities=10% Similarity=0.045 Sum_probs=28.7
Q ss_pred HHHHHHHHHhhCCCceEEEeeech----hHHHHHHHHHHHHhc
Q 038038 58 ECEFLRGLVDRNPNYTLTFAGHSL----GAGVVALLVLIVVQN 96 (150)
Q Consensus 58 ~~~~l~~~~~~~~~~~i~itGHSL----GGalA~l~a~~~~~~ 96 (150)
+.++|..+.++.-.+-.+|+|+-+ .+.|-..+..++.+.
T Consensus 113 L~~Fi~~a~~~~~rcv~VihGkG~s~g~~~vLK~~Vp~WL~qh 155 (184)
T COG2840 113 LGAFIARARAEGLRCVLVIHGKGRSKGSKPVLKSQVPRWLTQH 155 (184)
T ss_pred HHHHHHHHHHhCCcEEEEEeCCCcCCCCchhHHHHHHHHHHhC
Confidence 556677777766667889999654 467788888888775
No 345
>KOG1551 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.94 E-value=45 Score=26.89 Aligned_cols=21 Identities=19% Similarity=0.366 Sum_probs=18.5
Q ss_pred ceEEEeeechhHHHHHHHHHH
Q 038038 72 YTLTFAGHSLGAGVVALLVLI 92 (150)
Q Consensus 72 ~~i~itGHSLGGalA~l~a~~ 92 (150)
.++-++|-||||-+|++++..
T Consensus 195 g~~~~~g~Smgg~~a~~vgS~ 215 (371)
T KOG1551|consen 195 GNLNLVGRSMGGDIANQVGSL 215 (371)
T ss_pred ccceeeeeecccHHHHhhccc
Confidence 378899999999999998873
No 346
>PRK08944 motB flagellar motor protein MotB; Reviewed
Probab=22.94 E-value=4e+02 Score=21.35 Aligned_cols=55 Identities=11% Similarity=0.226 Sum_probs=32.3
Q ss_pred HHHHHHhhCCCceEEEeeechh---------------HHHHHHHHHHHHhcccccCCCCCCceEEEEecC--CCCCC
Q 038038 61 FLRGLVDRNPNYTLTFAGHSLG---------------AGVVALLVLIVVQNLDKLGNIERNKIRCFAIAP--TKCMS 120 (150)
Q Consensus 61 ~l~~~~~~~~~~~i~itGHSLG---------------GalA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~--P~v~~ 120 (150)
.+-..+..+|+ +|.|.||.=. .+-|.-++-+|... ++++..++.+..||. |...|
T Consensus 200 ~ia~~L~~~~~-~I~I~GHTD~~~~~~~~~~~N~~LS~~RA~aV~~~L~~~----~Gi~~~ri~~~G~Ge~~P~~~n 271 (302)
T PRK08944 200 KIGELLKDVPG-IITVSGHTDNVPISSELYRSNWDLSSARAVAVAHELLKV----KGFDPQRLKVVGMADTQPLVPN 271 (302)
T ss_pred HHHHHHHhCCC-eEEEEEecCCCCCcccccchHHHHHHHHHHHHHHHHHHh----cCCChhHEEEEEEcCCCcCCCC
Confidence 33444555665 7999999642 23344444444432 235667889999987 44443
No 347
>PRK10279 hypothetical protein; Provisional
Probab=22.43 E-value=89 Score=25.01 Aligned_cols=19 Identities=32% Similarity=0.135 Sum_probs=16.3
Q ss_pred EEEeeechhHHHHHHHHHH
Q 038038 74 LTFAGHSLGAGVVALLVLI 92 (150)
Q Consensus 74 i~itGHSLGGalA~l~a~~ 92 (150)
=.|+|=|.|+-+|.+.+..
T Consensus 35 d~i~GtS~GAlvga~yA~g 53 (300)
T PRK10279 35 DIVAGCSIGSLVGAAYACD 53 (300)
T ss_pred CEEEEEcHHHHHHHHHHcC
Confidence 5788999999999998853
No 348
>cd01479 Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 24 is very similar to Sec23. The Sec23 and Sec24
Probab=22.31 E-value=2.2e+02 Score=21.79 Aligned_cols=68 Identities=16% Similarity=0.158 Sum_probs=35.7
Q ss_pred eHhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHHHhcccccCCCCCCceEEEEecCCCCCCHH
Q 038038 44 HNGSLKAARWVFNAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIVVQNLDKLGNIERNKIRCFAIAPTKCMSLN 122 (150)
Q Consensus 44 H~Gf~~~~~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~~~~~~~~g~~~~~~i~~~tFg~P~v~~~~ 122 (150)
++||+--.....+.+...|+++.+...+. .-.+..+|.|+.....++ +. .| .+|-+++=++|..|.-.
T Consensus 82 ~~~~lv~l~e~~~~i~~lL~~L~~~~~~~--~~~~~c~G~Al~~A~~lL--~~---~G----GkIi~f~s~~pt~GpG~ 149 (244)
T cd01479 82 PDGLLVNLKESRQVIEDLLDQIPEMFQDT--KETESALGPALQAAFLLL--KE---TG----GKIIVFQSSLPTLGAGK 149 (244)
T ss_pred CcceeecHHHHHHHHHHHHHHHHHHHhcC--CCCcccHHHHHHHHHHHH--Hh---cC----CEEEEEeCCCCCcCCcc
Confidence 44554443333444555555554322211 124788898887666553 22 12 46666666778777443
No 349
>PRK10115 protease 2; Provisional
Probab=22.30 E-value=1.6e+02 Score=26.35 Aligned_cols=36 Identities=17% Similarity=0.134 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhhC--CCceEEEeeechhHHHHHHHH
Q 038038 55 FNAECEFLRGLVDRN--PNYTLTFAGHSLGAGVVALLV 90 (150)
Q Consensus 55 ~~~~~~~l~~~~~~~--~~~~i~itGHSLGGalA~l~a 90 (150)
++++.++++.+.++. ...+|.+.|-|-||-++..+.
T Consensus 505 ~~D~~a~~~~Lv~~g~~d~~rl~i~G~S~GG~l~~~~~ 542 (686)
T PRK10115 505 FNDYLDACDALLKLGYGSPSLCYGMGGSAGGMLMGVAI 542 (686)
T ss_pred HHHHHHHHHHHHHcCCCChHHeEEEEECHHHHHHHHHH
Confidence 556778888777663 356999999999998655443
No 350
>KOG1374 consensus Gamma tubulin [Cytoskeleton]
Probab=22.11 E-value=62 Score=27.21 Aligned_cols=67 Identities=12% Similarity=0.177 Sum_probs=42.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHHHhcccccCCCCCCceEEEEec
Q 038038 45 NGSLKAARWVFNAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIVVQNLDKLGNIERNKIRCFAIA 114 (150)
Q Consensus 45 ~Gf~~~~~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~~~~~~~~g~~~~~~i~~~tFg 114 (150)
.||-. ...+.+.+.+.|.+-.+.....+=++.=||.-|+.++-++..+.+.... -+|+.-+..|.-=
T Consensus 106 ~GY~~-G~~~~e~ImdiIdrEad~~DsleGF~l~hSiAGGTGSGlGS~llErL~d--rypkkliqtysVf 172 (448)
T KOG1374|consen 106 SGYSQ-GERVQEDIMDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSFLLERLND--RYPKKLVQTYSVF 172 (448)
T ss_pred ccccc-chhhHHHHHHHHHHhhcCCCcccceeEEEeecCCCCcchHHHHHHHHHH--hchhhhheeeeec
Confidence 45544 3455666777777766655445556667999999888888888765321 1344555555543
No 351
>cd00382 beta_CA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=22.05 E-value=1.4e+02 Score=20.24 Aligned_cols=30 Identities=20% Similarity=0.046 Sum_probs=20.2
Q ss_pred HHHHHHHHHhhCCCceEEEeeechhHHHHH
Q 038038 58 ECEFLRGLVDRNPNYTLTFAGHSLGAGVVA 87 (150)
Q Consensus 58 ~~~~l~~~~~~~~~~~i~itGHSLGGalA~ 87 (150)
....|+.+.....-..|+++|||=-|++..
T Consensus 45 ~~~sl~~av~~l~v~~ivV~gHt~CG~v~a 74 (119)
T cd00382 45 VLASLEYAVEVLGVKHIIVCGHTDCGAVKA 74 (119)
T ss_pred HHHHHHHHHHhhCCCEEEEEccCCCcHHHH
Confidence 334455555544556899999988887665
No 352
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=21.60 E-value=2.1e+02 Score=19.50 Aligned_cols=26 Identities=12% Similarity=0.118 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHhhCCCceEEEee
Q 038038 53 WVFNAECEFLRGLVDRNPNYTLTFAG 78 (150)
Q Consensus 53 ~~~~~~~~~l~~~~~~~~~~~i~itG 78 (150)
.+.+.+...++.+.+.+|+.+|++++
T Consensus 61 ~~~~~~~~~i~~i~~~~p~~~ii~~~ 86 (157)
T cd01833 61 TAPDRLRALIDQMRAANPDVKIIVAT 86 (157)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 34556777888888878888888876
No 353
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=21.52 E-value=1.2e+02 Score=22.79 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=9.7
Q ss_pred HHHhhCCCceEEEeeechhHHHHH
Q 038038 64 GLVDRNPNYTLTFAGHSLGAGVVA 87 (150)
Q Consensus 64 ~~~~~~~~~~i~itGHSLGGalA~ 87 (150)
++.++. ++..++||.|||==.++
T Consensus 102 ~ia~~~-ga~~IvTGEsLGQvaSQ 124 (197)
T PF02568_consen 102 EIAEEE-GADAIVTGESLGQVASQ 124 (197)
T ss_dssp HHHHHT-T--EEE----SSSTTS-
T ss_pred HHHHHC-CCCEEEeCchhHHHHhh
Confidence 334443 67899999999964333
No 354
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=21.26 E-value=1.6e+02 Score=22.76 Aligned_cols=35 Identities=11% Similarity=0.169 Sum_probs=21.5
Q ss_pred eeeHhHHHHHHHHHHHHHHHHHHHHhhCC-CceEEEeee
Q 038038 42 YVHNGSLKAARWVFNAECEFLRGLVDRNP-NYTLTFAGH 79 (150)
Q Consensus 42 ~vH~Gf~~~~~~~~~~~~~~l~~~~~~~~-~~~i~itGH 79 (150)
.++.|.+.+.... +...++++.++++ +.++++||-
T Consensus 180 ai~sG~~~g~~~~---i~~~i~~~~~~~~~~~~vi~TGG 215 (243)
T TIGR00671 180 AVQSGAVYGVLGL---IQGLLKDWKKYFKRKFAVVITGG 215 (243)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHhCCCCEEEEECC
Confidence 5677777664443 3444555555544 678999984
No 355
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.05 E-value=1.6e+02 Score=23.32 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=17.0
Q ss_pred hCCCceEEEeeec--hhHHHHHHHH
Q 038038 68 RNPNYTLTFAGHS--LGAGVVALLV 90 (150)
Q Consensus 68 ~~~~~~i~itGHS--LGGalA~l~a 90 (150)
...++++++.|.| .|-++|.++.
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~ 180 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLL 180 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHH
Confidence 3467899999998 4777666653
No 356
>PRK04148 hypothetical protein; Provisional
Probab=21.02 E-value=1.9e+02 Score=20.42 Aligned_cols=32 Identities=19% Similarity=0.132 Sum_probs=20.8
Q ss_pred HHHHHHHhhCCCceEEEeeechhHHHHHHHHH
Q 038038 60 EFLRGLVDRNPNYTLTFAGHSLGAGVVALLVL 91 (150)
Q Consensus 60 ~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~ 91 (150)
+.|.+......+.+++..|=..|.++|..++-
T Consensus 6 ~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~ 37 (134)
T PRK04148 6 EFIAENYEKGKNKKIVELGIGFYFKVAKKLKE 37 (134)
T ss_pred HHHHHhcccccCCEEEEEEecCCHHHHHHHHH
Confidence 33444333333467999998888888877763
No 357
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=21.00 E-value=2.9e+02 Score=27.51 Aligned_cols=36 Identities=19% Similarity=0.301 Sum_probs=27.5
Q ss_pred HHHHHHhhCCCceEEEeeechhHHHHHHHHHHHHhc
Q 038038 61 FLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIVVQN 96 (150)
Q Consensus 61 ~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~~~~ 96 (150)
+|+.+.+-.|...--+.|.|.|+++|--.+..+.+.
T Consensus 2171 yirqirkvQP~GPYrl~GYSyG~~l~f~ma~~Lqe~ 2206 (2376)
T KOG1202|consen 2171 YIRQIRKVQPEGPYRLAGYSYGACLAFEMASQLQEQ 2206 (2376)
T ss_pred HHHHHHhcCCCCCeeeeccchhHHHHHHHHHHHHhh
Confidence 344444446777788899999999999999888664
No 358
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=20.79 E-value=2.6e+02 Score=21.09 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=16.8
Q ss_pred EEeeechhHHHHHHHHHHHHh
Q 038038 75 TFAGHSLGAGVVALLVLIVVQ 95 (150)
Q Consensus 75 ~itGHSLGGalA~l~a~~~~~ 95 (150)
.+.||.+||++...++..++-
T Consensus 96 av~G~a~GgG~~lala~D~~i 116 (245)
T PF00378_consen 96 AVNGHAVGGGFELALACDFRI 116 (245)
T ss_dssp EESSEEETHHHHHHHHSSEEE
T ss_pred cccccccccccccccccceEE
Confidence 467999999998888877654
No 359
>PF03850 Tfb4: Transcription factor Tfb4; InterPro: IPR004600 Members of this family are part of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. The core-TFIIH basal transcription factor complex has six subunits, this is the p34 subunit.; GO: 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent, 0000439 core TFIIH complex
Probab=20.79 E-value=4.3e+02 Score=20.91 Aligned_cols=87 Identities=13% Similarity=0.048 Sum_probs=50.9
Q ss_pred ccCCCCeEEEEEcCCCCCCccchhhcccCCC-----CCccCCCceeeHhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEe
Q 038038 3 VLQKKTDIVLAIRGLNLAKEGGYAVLLDNKL-----GQTKLDGGYVHNGSLKAARWVFNAECEFLRGLVDRNPNYTLTFA 77 (150)
Q Consensus 3 ~d~~~~~ivva~RGT~~~~d~~~~~~~d~~~-----~~~~~~~~~vH~Gf~~~~~~~~~~~~~~l~~~~~~~~~~~i~it 77 (150)
.++.++..||+.-... ..|.+ +... ......-.....|.|+.++.+-+.+.+.+++++++-.+...--+
T Consensus 41 l~~~N~vaVIAs~~~~--s~~LY----P~~~~~~~~~~~~~~~~~~~~~~y~~f~~v~~~v~~~l~~l~~~~~~~~~~~~ 114 (276)
T PF03850_consen 41 LNHSNQVAVIASHSNS--SKFLY----PSPSSSESSNSGDVEMNSSDSNKYRQFRNVDETVLEELKKLMSETSESSDSTT 114 (276)
T ss_pred hCccCCEEEEEEcCCc--cEEEe----CCCccccccCCCcccccccccchhHHHHHHHHHHHHHHHHHHhhccccccccc
Confidence 4667777777763332 24432 2111 01112223566688988888877788888888875432222222
Q ss_pred eechhHHHHHHHHHHHHh
Q 038038 78 GHSLGAGVVALLVLIVVQ 95 (150)
Q Consensus 78 GHSLGGalA~l~a~~~~~ 95 (150)
.=.|.||++.-+.+.-+.
T Consensus 115 ~s~LagALS~ALCyINR~ 132 (276)
T PF03850_consen 115 SSLLAGALSMALCYINRI 132 (276)
T ss_pred chhhHHHHHHHHHHHhhh
Confidence 256889998877776654
No 360
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=20.78 E-value=1.4e+02 Score=24.86 Aligned_cols=37 Identities=22% Similarity=0.351 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhhCCCceEEEeeechhHHHHHHHHHHH
Q 038038 55 FNAECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLIV 93 (150)
Q Consensus 55 ~~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~~ 93 (150)
.+.+.+.+++.-. |.--|++++|-+|-|+.+++...+
T Consensus 394 a~ai~~~~k~~s~--~hplivv~~~D~gKaLGq~l~~~l 430 (473)
T COG4819 394 ANAIVDFVKRFSN--PHPLIVVAEQDFGKALGQLLRPQL 430 (473)
T ss_pred HHHHHHHHHhcCC--CCcEEEEEhhHHHHHHHHHhcccC
Confidence 4444444444322 334688999999999888765543
No 361
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=20.75 E-value=1.7e+02 Score=21.01 Aligned_cols=34 Identities=21% Similarity=0.355 Sum_probs=22.3
Q ss_pred HHHHHHHhhCCCceEEEeee-chhHHHHHHHHHHHH
Q 038038 60 EFLRGLVDRNPNYTLTFAGH-SLGAGVVALLVLIVV 94 (150)
Q Consensus 60 ~~l~~~~~~~~~~~i~itGH-SLGGalA~l~a~~~~ 94 (150)
+.|.++.++.. ..++++|| |.|+.+|..+|..+-
T Consensus 81 ~~l~~~i~~~~-p~~Vl~g~t~~g~~la~rlA~~L~ 115 (181)
T cd01985 81 KALAALIKKEK-PDLILAGATSIGKQLAPRVAALLG 115 (181)
T ss_pred HHHHHHHHHhC-CCEEEECCcccccCHHHHHHHHhC
Confidence 33444443332 56888885 578889999988874
No 362
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=20.74 E-value=2.6e+02 Score=21.56 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=18.2
Q ss_pred EEEeeechhHHHHHHHHHHHHh
Q 038038 74 LTFAGHSLGAGVVALLVLIVVQ 95 (150)
Q Consensus 74 i~itGHSLGGalA~l~a~~~~~ 95 (150)
-.+-||.+||++...++..++-
T Consensus 114 Aav~G~a~GgG~~lalacD~~i 135 (272)
T PRK06142 114 AAVQGWCIGGGVDLISACDMRY 135 (272)
T ss_pred EEecCccccchHHHHHhCCEEE
Confidence 4567999999999999988753
No 363
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.71 E-value=1.6e+02 Score=23.50 Aligned_cols=69 Identities=12% Similarity=0.173 Sum_probs=38.4
Q ss_pred HHHHHHHHHhhCCCceEEEeeec--hhHHHHHHHHHHHH------hcccccC-CCCCCceEEEEecCCCCCCHHHHHh
Q 038038 58 ECEFLRGLVDRNPNYTLTFAGHS--LGAGVVALLVLIVV------QNLDKLG-NIERNKIRCFAIAPTKCMSLNLAVR 126 (150)
Q Consensus 58 ~~~~l~~~~~~~~~~~i~itGHS--LGGalA~l~a~~~~------~~~~~~g-~~~~~~i~~~tFg~P~v~~~~~a~~ 126 (150)
+.+.++..--+..++++++.|.| .|--+|.++.-.=. .....+. .....++-+.+-|.|.....++.+.
T Consensus 144 vi~lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~~l~~~~~~ADIvV~AvG~p~~i~~~~vk~ 221 (285)
T PRK14191 144 VMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDLSFYTQNADIVCVGVGKPDLIKASMVKK 221 (285)
T ss_pred HHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHhCCEEEEecCCCCcCCHHHcCC
Confidence 44444444334568999999998 67777666642100 0000110 0123466677777777777666553
No 364
>KOG3463 consensus Transcription initiation factor IIA, gamma subunit [Transcription]
Probab=20.62 E-value=2.4e+02 Score=19.25 Aligned_cols=29 Identities=14% Similarity=0.236 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHhhCCCceEEEeee
Q 038038 51 ARWVFNAECEFLRGLVDRNPNYTLTFAGH 79 (150)
Q Consensus 51 ~~~~~~~~~~~l~~~~~~~~~~~i~itGH 79 (150)
|..+..++...+.+++++....++.+.||
T Consensus 34 a~~VL~~FDKSi~~al~~~vk~kmsfkg~ 62 (109)
T KOG3463|consen 34 AKKVLEQFDKSINEALNDKVKNKMSFKGK 62 (109)
T ss_pred HHHHHHHHHHHHHHHHHHhcccceeeeec
Confidence 45566677777788887777778888876
No 365
>cd07207 Pat_ExoU_VipD_like ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2. ExoU, a 74-kDa enzyme, is a potent virulence factor of Pseudomonas aeruginosa. One of the pathogenic mechanisms of P. aeruginosa is to induce cytotoxicity by the injection of effector proteins (e.g. ExoU) using the type III secretion (T3S) system. ExoU is homologus to patatin and also has the conserved catalytic residues of mammalian calcium-independent (iPLA2) and cytosolic (cPLA2) PLA2. In vitro, ExoU cytotoxity is blocked by the inhibitor of cytosolic and Ca2-independent phospholipase A2 (cPLA2 and iPLA2) enzymes, suggesting that phospholipase A2 inhibitors may represent a novel mode of treatment for acute P. aeruginosa infections. ExoU requires eukaryotic superoxide dismutase as a cofactor and cleaves phosphatidylcholine and phosphatidylethanolamine in vitro. VipD, a 69-kDa cytosolic protein, belongs to the members of Legionella pneumophila family and is homologus to ExoU from Pseudomona
Probab=20.62 E-value=1.5e+02 Score=21.30 Aligned_cols=19 Identities=47% Similarity=0.389 Sum_probs=16.5
Q ss_pred EEEeeechhHHHHHHHHHH
Q 038038 74 LTFAGHSLGAGVVALLVLI 92 (150)
Q Consensus 74 i~itGHSLGGalA~l~a~~ 92 (150)
=+++|=|.||-+|.+++..
T Consensus 29 d~i~GtSaGai~aa~~a~g 47 (194)
T cd07207 29 KRVAGTSAGAITAALLALG 47 (194)
T ss_pred ceEEEECHHHHHHHHHHcC
Confidence 5788999999999988873
No 366
>cd07232 Pat_PLPL Patain-like phospholipase. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants and fungi. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
Probab=20.56 E-value=2.2e+02 Score=23.86 Aligned_cols=17 Identities=41% Similarity=0.434 Sum_probs=15.4
Q ss_pred EEeeechhHHHHHHHHH
Q 038038 75 TFAGHSLGAGVVALLVL 91 (150)
Q Consensus 75 ~itGHSLGGalA~l~a~ 91 (150)
+|+|-|.|+-+|.+++.
T Consensus 98 iI~GtSAGAivaalla~ 114 (407)
T cd07232 98 VISGTSGGSLVAALLCT 114 (407)
T ss_pred EEEEECHHHHHHHHHHc
Confidence 48999999999999887
No 367
>PLN03014 carbonic anhydrase
Probab=20.56 E-value=1e+02 Score=25.38 Aligned_cols=33 Identities=18% Similarity=0.126 Sum_probs=23.1
Q ss_pred HHHHHHHHHhhCCCceEEEeeechhHHHHHHHH
Q 038038 58 ECEFLRGLVDRNPNYTLTFAGHSLGAGVVALLV 90 (150)
Q Consensus 58 ~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a 90 (150)
....|+.+.....-..|+|+|||-=||+..++.
T Consensus 206 v~asLEYAV~~L~V~~IVV~GHs~CGaV~Aa~~ 238 (347)
T PLN03014 206 VGAAIEYAVLHLKVENIVVIGHSACGGIKGLMS 238 (347)
T ss_pred chhHHHHHHHHhCCCEEEEeCCCCchHHHHHHh
Confidence 345566666554445899999998888776654
No 368
>PRK13326 pantothenate kinase; Reviewed
Probab=20.40 E-value=1.6e+02 Score=23.05 Aligned_cols=44 Identities=14% Similarity=0.274 Sum_probs=26.3
Q ss_pred eeeHhHHHHHHHHHHHHHHHHHHHHhhCC-CceEEEeeechhHHHHHHHHHHH
Q 038038 42 YVHNGSLKAARWVFNAECEFLRGLVDRNP-NYTLTFAGHSLGAGVVALLVLIV 93 (150)
Q Consensus 42 ~vH~Gf~~~~~~~~~~~~~~l~~~~~~~~-~~~i~itGHSLGGalA~l~a~~~ 93 (150)
.++.|.+.+.... +...++++.++++ +.++++||- .|.+++..+
T Consensus 190 aI~sGi~~g~~~~---I~g~i~~~~~e~~~~~~vv~TGG-----~a~~l~~~~ 234 (262)
T PRK13326 190 SVNSGVIYQYKYL---IEGVYHDLKRNYDREFNLIITGG-----NSNLILPLI 234 (262)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHhCCCCEEEEECC-----CHHHHHhhC
Confidence 5778887775444 4444555555543 578999974 344444443
No 369
>cd04506 SGNH_hydrolase_YpmR_like Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. This subfamily contains sequences similar to Bacillus YpmR.
Probab=20.30 E-value=2.8e+02 Score=19.84 Aligned_cols=25 Identities=16% Similarity=0.260 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhhCCCceEEEeee
Q 038038 55 FNAECEFLRGLVDRNPNYTLTFAGH 79 (150)
Q Consensus 55 ~~~~~~~l~~~~~~~~~~~i~itGH 79 (150)
.+.+.+.|+++.+.+|+.+|+++|.
T Consensus 105 ~~~l~~~i~~ir~~~p~~~Ivv~~~ 129 (204)
T cd04506 105 QNNLKKIFKEIRKLNPDAPIFLVGL 129 (204)
T ss_pred HHHHHHHHHHHHHHCCCCeEEEEec
Confidence 4457778888888888889999985
No 370
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=20.23 E-value=1.5e+02 Score=25.21 Aligned_cols=34 Identities=21% Similarity=0.205 Sum_probs=21.2
Q ss_pred HHHHHHHHhhCCCceEEEeeechhHHHHHHHHHH
Q 038038 59 CEFLRGLVDRNPNYTLTFAGHSLGAGVVALLVLI 92 (150)
Q Consensus 59 ~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~ 92 (150)
...++....+-...++++.|.|.|+=+=..+.-+
T Consensus 313 ~r~i~~y~~~w~~~~~~liGySfGADvlP~~~n~ 346 (456)
T COG3946 313 SRLIRFYARRWGAKRVLLIGYSFGADVLPFAYNR 346 (456)
T ss_pred HHHHHHHHHhhCcceEEEEeecccchhhHHHHHh
Confidence 3333333333456789999999998765444433
No 371
>cd07210 Pat_hypo_W_succinogenes_WS1459_like Hypothetical patatin similar to WS1459 of Wolinella succinogenes. Patatin-like phospholipase. This family predominantly consists of bacterial patatin glycoproteins. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=20.20 E-value=2.8e+02 Score=20.88 Aligned_cols=17 Identities=35% Similarity=0.378 Sum_probs=15.4
Q ss_pred EEeeechhHHHHHHHHH
Q 038038 75 TFAGHSLGAGVVALLVL 91 (150)
Q Consensus 75 ~itGHSLGGalA~l~a~ 91 (150)
.++|=|.|+-+|.+++.
T Consensus 31 ~i~GtSaGAi~aa~~a~ 47 (221)
T cd07210 31 AISGTSAGALVGGLFAS 47 (221)
T ss_pred EEEEeCHHHHHHHHHHc
Confidence 59999999999998886
Done!