Query 038042
Match_columns 162
No_of_seqs 112 out of 1257
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 06:58:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038042.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038042hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0498 K+-channel ERG and rel 99.9 2.9E-24 6.4E-29 183.9 4.5 147 3-161 400-550 (727)
2 KOG0500 Cyclic nucleotide-gate 99.8 1.2E-20 2.7E-25 153.2 8.5 148 3-157 288-435 (536)
3 PRK09392 ftrB transcriptional 99.8 1.4E-19 3E-24 138.2 11.8 115 22-146 5-120 (236)
4 PLN03192 Voltage-dependent pot 99.8 5E-20 1.1E-24 162.7 9.5 130 3-146 355-487 (823)
5 PRK11753 DNA-binding transcrip 99.8 2.5E-17 5.4E-22 123.5 13.4 106 32-146 5-112 (211)
6 cd00038 CAP_ED effector domain 99.7 1.1E-16 2.4E-21 107.2 12.4 108 31-146 1-108 (115)
7 KOG0499 Cyclic nucleotide-gate 99.7 1.4E-17 3E-22 138.1 8.7 148 3-159 508-655 (815)
8 PRK11161 fumarate/nitrate redu 99.7 7.5E-17 1.6E-21 123.0 12.1 110 26-146 15-127 (235)
9 PLN02868 acyl-CoA thioesterase 99.7 3.9E-16 8.4E-21 128.6 14.4 127 22-159 6-132 (413)
10 PF00027 cNMP_binding: Cyclic 99.7 2.2E-16 4.7E-21 102.6 9.5 89 50-146 2-90 (91)
11 smart00100 cNMP Cyclic nucleot 99.7 1E-15 2.2E-20 103.0 12.7 110 31-146 1-110 (120)
12 PRK10402 DNA-binding transcrip 99.7 2.4E-16 5.2E-21 120.0 9.2 97 40-146 24-122 (226)
13 COG0664 Crp cAMP-binding prote 99.7 7.1E-16 1.5E-20 114.6 11.5 111 26-146 2-114 (214)
14 COG2905 Predicted signal-trans 99.6 1.6E-15 3.4E-20 125.7 10.2 114 21-146 4-117 (610)
15 KOG0614 cGMP-dependent protein 99.6 3.6E-15 7.9E-20 122.9 5.6 117 21-145 269-387 (732)
16 PRK09391 fixK transcriptional 99.6 4.4E-14 9.5E-19 107.9 10.5 94 44-150 35-131 (230)
17 TIGR03697 NtcA_cyano global ni 99.5 8.2E-14 1.8E-18 102.9 9.4 84 55-146 1-86 (193)
18 KOG1113 cAMP-dependent protein 99.5 2.6E-14 5.6E-19 112.7 6.8 110 23-145 121-230 (368)
19 PRK13918 CRP/FNR family transc 99.5 3.2E-13 6.9E-18 100.6 9.7 82 46-138 5-90 (202)
20 KOG0614 cGMP-dependent protein 99.4 1.4E-13 2.9E-18 113.7 3.9 112 22-146 152-263 (732)
21 KOG1113 cAMP-dependent protein 99.3 3.4E-12 7.5E-17 100.8 6.0 114 21-146 237-350 (368)
22 KOG0501 K+-channel KCNQ [Inorg 99.2 1.4E-11 3.1E-16 102.9 5.1 127 5-146 531-659 (971)
23 KOG2968 Predicted esterase of 98.5 1.9E-08 4.1E-13 87.8 0.7 98 39-146 500-599 (1158)
24 PF04831 Popeye: Popeye protei 98.3 9.4E-06 2E-10 57.7 10.1 105 34-146 14-120 (153)
25 PRK11832 putative DNA-binding 98.1 0.00012 2.5E-09 55.1 11.6 95 40-146 15-110 (207)
26 KOG2968 Predicted esterase of 98.1 1.2E-05 2.5E-10 70.9 6.8 114 43-162 111-230 (1158)
27 KOG3542 cAMP-regulated guanine 97.8 6.5E-05 1.4E-09 64.8 6.2 127 3-144 263-390 (1283)
28 KOG3542 cAMP-regulated guanine 96.1 0.011 2.3E-07 51.6 5.0 90 25-135 38-127 (1283)
29 PF07883 Cupin_2: Cupin domain 93.6 0.67 1.5E-05 27.9 7.0 45 50-100 3-48 (71)
30 PRK13290 ectC L-ectoine syntha 90.3 3 6.5E-05 28.8 7.8 67 50-134 40-107 (125)
31 PF05899 Cupin_3: Protein of u 88.9 0.73 1.6E-05 28.7 3.6 41 53-100 15-55 (74)
32 COG1917 Uncharacterized conser 81.5 5.6 0.00012 27.2 5.5 48 48-101 46-94 (131)
33 smart00835 Cupin_1 Cupin. This 80.1 8.7 0.00019 26.9 6.2 54 47-100 32-86 (146)
34 COG3718 IolB Uncharacterized e 79.4 13 0.00028 28.8 7.1 34 48-81 32-65 (270)
35 COG0662 {ManC} Mannose-6-phosp 78.6 8.4 0.00018 26.4 5.6 47 48-100 39-86 (127)
36 TIGR02272 gentisate_1_2 gentis 76.3 14 0.00031 30.0 7.0 73 51-142 256-328 (335)
37 PF12973 Cupin_7: ChrR Cupin-l 69.1 27 0.00058 22.2 6.4 63 47-132 26-88 (91)
38 PF06249 EutQ: Ethanolamine ut 66.0 39 0.00085 24.3 6.6 52 64-134 94-145 (152)
39 TIGR03037 anthran_nbaC 3-hydro 65.9 33 0.00072 24.8 6.3 62 59-137 43-105 (159)
40 COG3837 Uncharacterized conser 64.5 12 0.00026 27.0 3.7 55 41-101 31-94 (161)
41 PRK11171 hypothetical protein; 64.4 47 0.001 25.9 7.5 46 49-100 65-112 (266)
42 TIGR03404 bicupin_oxalic bicup 64.3 30 0.00066 28.4 6.6 52 48-100 70-121 (367)
43 PRK13264 3-hydroxyanthranilate 62.7 21 0.00044 26.4 4.8 58 64-137 53-111 (177)
44 COG3257 GlxB Uncharacterized p 62.7 67 0.0015 24.7 7.6 38 56-99 74-111 (264)
45 PF00190 Cupin_1: Cupin; Inte 61.8 29 0.00062 24.1 5.4 50 50-100 39-95 (144)
46 TIGR03404 bicupin_oxalic bicup 61.7 38 0.00082 27.9 6.7 50 48-100 248-300 (367)
47 TIGR02451 anti_sig_ChrR anti-s 61.3 26 0.00057 26.5 5.4 69 46-137 128-198 (215)
48 PRK11171 hypothetical protein; 61.0 33 0.00071 26.8 6.0 49 46-100 185-234 (266)
49 TIGR03214 ura-cupin putative a 60.1 37 0.0008 26.4 6.2 45 50-100 63-109 (260)
50 PRK09943 DNA-binding transcrip 55.2 48 0.001 24.1 5.8 31 64-100 127-157 (185)
51 PRK04190 glucose-6-phosphate i 54.7 87 0.0019 23.3 7.4 50 50-100 73-131 (191)
52 PF14633 SH2_2: SH2 domain; PD 52.3 37 0.0008 25.9 4.8 42 23-69 32-74 (220)
53 TIGR03214 ura-cupin putative a 51.0 42 0.00091 26.1 5.1 49 45-99 179-228 (260)
54 COG3450 Predicted enzyme of th 48.2 81 0.0018 21.6 5.6 43 50-99 50-92 (116)
55 PRK15457 ethanolamine utilizat 47.4 37 0.0008 26.2 4.1 29 65-99 175-203 (233)
56 TIGR02272 gentisate_1_2 gentis 47.2 31 0.00068 28.1 4.0 48 49-101 85-132 (335)
57 TIGR01479 GMP_PMI mannose-1-ph 45.3 1.2E+02 0.0026 25.7 7.4 45 50-100 381-426 (468)
58 PF01050 MannoseP_isomer: Mann 44.0 90 0.0019 22.3 5.5 45 49-99 67-112 (151)
59 COG4766 EutQ Ethanolamine util 43.7 49 0.0011 23.9 4.0 29 65-99 118-146 (176)
60 PF02311 AraC_binding: AraC-li 43.3 47 0.001 21.7 3.9 32 63-100 21-52 (136)
61 PF07697 7TMR-HDED: 7TM-HD ext 41.5 21 0.00044 26.5 2.0 31 36-66 175-207 (222)
62 PRK15460 cpsB mannose-1-phosph 39.4 1.7E+02 0.0037 25.1 7.4 30 65-100 406-435 (478)
63 COG4101 Predicted mannose-6-ph 38.6 76 0.0017 22.0 4.2 69 30-101 31-100 (142)
64 PHA00672 hypothetical protein 37.6 57 0.0012 22.8 3.5 33 48-81 50-82 (152)
65 PLN02559 chalcone--flavonone i 36.8 37 0.00079 26.1 2.7 44 21-64 112-155 (230)
66 PF02041 Auxin_BP: Auxin bindi 36.4 79 0.0017 22.8 4.1 49 49-100 48-102 (167)
67 KOG2378 cAMP-regulated guanine 36.3 39 0.00084 28.8 3.0 44 95-146 1-45 (573)
68 PF11699 CENP-C_C: Mif2/CENP-C 35.5 58 0.0013 20.9 3.1 29 66-100 34-62 (85)
69 PLN00212 glutelin; Provisional 30.4 1.2E+02 0.0025 26.2 5.0 53 48-100 351-404 (493)
70 smart00252 SH2 Src homology 2 30.1 1.1E+02 0.0024 18.6 3.9 26 34-64 7-32 (84)
71 cd00173 SH2 Src homology 2 dom 29.9 1E+02 0.0023 19.1 3.8 30 32-66 4-33 (94)
72 PLN02804 chalcone isomerase 27.2 72 0.0016 24.1 2.9 41 21-61 106-146 (206)
73 COG3435 Gentisate 1,2-dioxygen 27.0 2.6E+02 0.0056 22.7 6.0 62 63-143 279-341 (351)
74 PF06052 3-HAO: 3-hydroxyanthr 26.0 1.5E+02 0.0033 21.2 4.2 60 64-139 52-112 (151)
75 COG3435 Gentisate 1,2-dioxygen 25.3 1.2E+02 0.0025 24.7 3.8 48 50-102 97-144 (351)
76 PF12852 Cupin_6: Cupin 24.7 1.8E+02 0.004 20.8 4.7 35 61-99 31-65 (186)
77 PF10330 Stb3: Putative Sin3 b 24.3 1E+02 0.0023 20.1 2.8 27 23-49 28-54 (92)
78 KOG2757 Mannose-6-phosphate is 23.2 2.8E+02 0.0061 23.1 5.7 47 49-100 337-383 (411)
79 COG2140 Thermophilic glucose-6 21.3 2.8E+02 0.006 21.1 5.0 33 66-99 104-136 (209)
No 1
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.89 E-value=2.9e-24 Score=183.88 Aligned_cols=147 Identities=33% Similarity=0.388 Sum_probs=130.1
Q ss_pred ccccCCcCce--eeeeccccchHhhhhhCccccccCHHHHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEee
Q 038042 3 CLFKLPCGLN--IITHANTLTPLHSLVLHQVFDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEP 80 (162)
Q Consensus 3 ~~~~lp~~~~--~~~~~~~~~~~~~L~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~ 80 (162)
.|..||+.|| |++| .++++++++|+|+++|+..+.+|+..++...|++|++|++|||+.+.||||.+|.+++..
T Consensus 400 lL~~LP~~LR~dI~~h----L~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~ 475 (727)
T KOG0498|consen 400 LLQSLPKDLRRDIKRH----LCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESIT 475 (727)
T ss_pred HHHhCCHHHHHHHHHH----HhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEE
Confidence 4788999999 9999 889999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCceeeeeeeeCCCCeee-cccccCccccccCCCCcceeEEEecceeEEEEEeHHHHHHHHhhCC-CCCCchhHHHhh
Q 038042 81 TTIRTTTFSFNASNDGHFCG-EELLPRASVLQLGGLPISTRTVIAHTPVEAFVIEADDWKQLVNSFM-LPDDQLPYIFRL 158 (162)
Q Consensus 81 ~~~~~~~~~~~~~~~G~~~G-e~~l~~~~~~~~~~~~~~~~tv~a~~~~~l~~i~~~~~~~l~~~~p-~~~~~l~~~~~~ 158 (162)
.+|. .......++|||+|| |...... .. |++.||+|.|.|+++.+++++|..+++++| +.+++++..++.
T Consensus 476 ~~~g-~~~~~~~L~~Gd~~GeEl~~~~~------~~-p~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~l~~~~r~ 547 (727)
T KOG0498|consen 476 TDGG-GFFVVAILGPGDFFGEELLTWCL------DL-PQTRTVRALTYCELFRLSADDLKEVLQQFRRLGSKFLQHTFRY 547 (727)
T ss_pred ccCC-ceEEEEEecCCCccchHHHHHHh------cC-CCCceeehhhhhhHHhccHHHHHHHHHHhHHHHHHHHHhHHHH
Confidence 8754 333457899999999 5444322 02 568999999999999999999999999999 888888888887
Q ss_pred hcc
Q 038042 159 TQK 161 (162)
Q Consensus 159 ~~~ 161 (162)
+++
T Consensus 548 ~s~ 550 (727)
T KOG0498|consen 548 YSH 550 (727)
T ss_pred hhh
Confidence 764
No 2
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.83 E-value=1.2e-20 Score=153.21 Aligned_cols=148 Identities=19% Similarity=0.175 Sum_probs=125.7
Q ss_pred ccccCCcCceeeeeccccchHhhhhhCccccccCHHHHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeeec
Q 038042 3 CLFKLPCGLNIITHANTLTPLHSLVLHQVFDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTT 82 (162)
Q Consensus 3 ~~~~lp~~~~~~~~~~~~~~~~~L~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~ 82 (162)
.|..||+.|+-...+| .+.+.|+++++|+...+..+..++-.++++.|.||++|++.||.+++||+|.+|..++...|
T Consensus 288 vl~~LP~kL~aeIA~n--vh~dTLkkV~iF~~ce~~lL~elVLklk~qvfSPgDyICrKGdvgkEMyIVk~G~L~Vv~dD 365 (536)
T KOG0500|consen 288 VLKLLPDKLKAEIAIN--VHLDTLKKVRIFQDCEAGLLVELVLKLKPQVFSPGDYICRKGDVGKEMYIVKEGKLAVVADD 365 (536)
T ss_pred HHHhCCHHHHhHhHHH--HHHHHHHhhhHHHhcchhHHHHHHHHhcceeeCCCCeEEecCcccceEEEEEccEEEEEecC
Confidence 4678999999444444 77999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCceeeeeeeeCCCCeeecccccCccccccCCCCcceeEEEecceeEEEEEeHHHHHHHHhhCCCCCCchhHHHh
Q 038042 83 IRTTTFSFNASNDGHFCGEELLPRASVLQLGGLPISTRTVIAHTPVEAFVIEADDWKQLVNSFMLPDDQLPYIFR 157 (162)
Q Consensus 83 ~~~~~~~~~~~~~G~~~Ge~~l~~~~~~~~~~~~~~~~tv~a~~~~~l~~i~~~~~~~l~~~~p~~~~~l~~~~~ 157 (162)
|.+.. ..+++|++|||++++.=..+.-++ .++++++.+..+.+++++++|+-+.+.++|-+.+++.+..|
T Consensus 366 g~t~~---~~L~~G~~FGEisIlni~g~~~gN--RRtanvrSvGYSDlfvLskdDl~~aL~eYP~a~~~L~~kgr 435 (536)
T KOG0500|consen 366 GVTVF---VTLKAGSVFGEISILNIKGNKNGN--RRTANVRSVGYSDLFVLSKDDLWEALSEYPDARKRLEEKGR 435 (536)
T ss_pred CcEEE---EEecCCceeeeeEEEEEcCcccCC--cceeeeeeeccceeeEeeHHHHHHHHHhCCHHHHHHHHHHH
Confidence 85433 479999999999886322112223 78999999999999999999999999999966666665444
No 3
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.82 E-value=1.4e-19 Score=138.25 Aligned_cols=115 Identities=12% Similarity=0.098 Sum_probs=103.3
Q ss_pred hHhhhhhCccccccCHHHHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeeec-CCceeeeeeeeCCCCeee
Q 038042 22 PLHSLVLHQVFDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTT-IRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 22 ~~~~L~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~-~~~~~~~~~~~~~G~~~G 100 (162)
...+++.+++|+.+++++++++...++.+.|++|+.|+++|+.++++|+|++|.++++..+ |+.. ....+.+|++||
T Consensus 5 ~~~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~~~~~--~i~~~~~g~~~g 82 (236)
T PRK09392 5 DLIRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASSQDRET--TLAILRPVSTFI 82 (236)
T ss_pred HHHHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcCCCceE--EEEEeCCCchhh
Confidence 4578999999999999999999999999999999999999999999999999999998763 3433 347899999999
Q ss_pred cccccCccccccCCCCcceeEEEecceeEEEEEeHHHHHHHHhhCC
Q 038042 101 EELLPRASVLQLGGLPISTRTVIAHTPVEAFVIEADDWKQLVNSFM 146 (162)
Q Consensus 101 e~~l~~~~~~~~~~~~~~~~tv~a~~~~~l~~i~~~~~~~l~~~~p 146 (162)
+.+++... ++..+++|.++|+++.++++.|.+++.++|
T Consensus 83 ~~~~~~~~--------~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p 120 (236)
T PRK09392 83 LAAVVLDA--------PYLMSARTLTRSRVLMIPAELVREAMSEDP 120 (236)
T ss_pred hHHHhCCC--------CCceEEEEcCceEEEEEeHHHHHHHHHHCH
Confidence 98776542 678899999999999999999999999999
No 4
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.81 E-value=5e-20 Score=162.70 Aligned_cols=130 Identities=12% Similarity=0.125 Sum_probs=117.1
Q ss_pred ccccCCcCce--eeeeccccchHhhhhhCccccccCHHHHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEee
Q 038042 3 CLFKLPCGLN--IITHANTLTPLHSLVLHQVFDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEP 80 (162)
Q Consensus 3 ~~~~lp~~~~--~~~~~~~~~~~~~L~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~ 80 (162)
.+..||+.|+ |+.+ .+.++++++++|++++++.+.+++..++.+.|++||.|+.+|+.++.+|||.+|.|++..
T Consensus 355 ~l~~Lp~~Lr~~i~~~----l~~~~l~~~~lF~~~s~~~l~~L~~~~~~~~~~pge~I~~qge~~~~lY~I~~G~V~i~~ 430 (823)
T PLN03192 355 LIDQLPKSICKSICQH----LFLPVVEKVYLFKGVSREILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIVVSGEVEIID 430 (823)
T ss_pred HHHHcCHHHHHHHHHH----HHHHHHhhCcchhcCCHHHHHHHHHhhheeeeCCCCEEEECCCCCceEEEEEecEEEEEE
Confidence 3678999999 8777 778899999999999999999999999999999999999999999999999999999987
Q ss_pred ecC-CceeeeeeeeCCCCeeecccccCccccccCCCCcceeEEEecceeEEEEEeHHHHHHHHhhCC
Q 038042 81 TTI-RTTTFSFNASNDGHFCGEELLPRASVLQLGGLPISTRTVIAHTPVEAFVIEADDWKQLVNSFM 146 (162)
Q Consensus 81 ~~~-~~~~~~~~~~~~G~~~Ge~~l~~~~~~~~~~~~~~~~tv~a~~~~~l~~i~~~~~~~l~~~~p 146 (162)
.++ ++..+ ..+++|++|||.+++... +++.+++|.++|+++.+++++|.++++++|
T Consensus 431 ~~~~~e~~l--~~l~~Gd~FGE~~~l~~~--------p~~~t~ra~~~s~ll~l~~~~f~~ll~~~p 487 (823)
T PLN03192 431 SEGEKERVV--GTLGCGDIFGEVGALCCR--------PQSFTFRTKTLSQLLRLKTSTLIEAMQTRQ 487 (823)
T ss_pred ecCCcceee--EEccCCCEecchHHhcCC--------CCCCeEEEcccEEEEEEEHHHHHHHHHHhh
Confidence 543 33333 679999999999887643 788999999999999999999999999999
No 5
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.75 E-value=2.5e-17 Score=123.49 Aligned_cols=106 Identities=23% Similarity=0.270 Sum_probs=93.3
Q ss_pred ccccCHHHHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeee--cCCceeeeeeeeCCCCeeecccccCccc
Q 038042 32 FDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPT--TIRTTTFSFNASNDGHFCGEELLPRASV 109 (162)
Q Consensus 32 F~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~--~~~~~~~~~~~~~~G~~~Ge~~l~~~~~ 109 (162)
-..++++++++++..++.++|++|++|+.+|++++++|+|++|.++++.. +|+... ...+++|++||+.+++.+.
T Consensus 5 ~~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~--~~~~~~g~~~g~~~~~~~~- 81 (211)
T PRK11753 5 GKPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMI--LSYLNQGDFIGELGLFEEG- 81 (211)
T ss_pred cCCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEEeehhhccCC-
Confidence 36789999999999999999999999999999999999999999999975 344333 3679999999998776531
Q ss_pred cccCCCCcceeEEEecceeEEEEEeHHHHHHHHhhCC
Q 038042 110 LQLGGLPISTRTVIAHTPVEAFVIEADDWKQLVNSFM 146 (162)
Q Consensus 110 ~~~~~~~~~~~tv~a~~~~~l~~i~~~~~~~l~~~~p 146 (162)
++++.+++|.++|+++.+++++|.+++.++|
T Consensus 82 ------~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p 112 (211)
T PRK11753 82 ------QERSAWVRAKTACEVAEISYKKFRQLIQVNP 112 (211)
T ss_pred ------CCceEEEEEcCcEEEEEEcHHHHHHHHHHCH
Confidence 2567899999999999999999999999999
No 6
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.73 E-value=1.1e-16 Score=107.22 Aligned_cols=108 Identities=18% Similarity=0.307 Sum_probs=93.6
Q ss_pred cccccCHHHHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeeecccccCcccc
Q 038042 31 VFDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCGEELLPRASVL 110 (162)
Q Consensus 31 lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~Ge~~l~~~~~~ 110 (162)
+|..++++++..+.+.++...|++|++|+.+|+.++++|+|.+|.++++..+..........+.+|+++|+..++.+.
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~-- 78 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGELALLGNG-- 78 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcChHHHhcCC--
Confidence 478999999999999999999999999999999999999999999999876431112223678999999997776332
Q ss_pred ccCCCCcceeEEEecceeEEEEEeHHHHHHHHhhCC
Q 038042 111 QLGGLPISTRTVIAHTPVEAFVIEADDWKQLVNSFM 146 (162)
Q Consensus 111 ~~~~~~~~~~tv~a~~~~~l~~i~~~~~~~l~~~~p 146 (162)
++..++.|.++|.++.++.++|.+++.++|
T Consensus 79 ------~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~ 108 (115)
T cd00038 79 ------PRSATVRALTDSELLVLPRSDFRRLLQEYP 108 (115)
T ss_pred ------CCCceEEEcCceEEEEEeHHHHHHHHHHCc
Confidence 677899999999999999999999999998
No 7
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.73 E-value=1.4e-17 Score=138.14 Aligned_cols=148 Identities=22% Similarity=0.244 Sum_probs=124.9
Q ss_pred ccccCCcCceeeeeccccchHhhhhhCccccccCHHHHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeeec
Q 038042 3 CLFKLPCGLNIITHANTLTPLHSLVLHQVFDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTT 82 (162)
Q Consensus 3 ~~~~lp~~~~~~~~~~~~~~~~~L~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~ 82 (162)
.|.+||..++.-+.++ .....|.++.+|++.+...+.-++-.+....|-+|++|++.|+.++.||+|..|.|.+.-.+
T Consensus 508 ll~~LP~klq~dlAi~--V~y~~lSKVqLFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQVlGGp 585 (815)
T KOG0499|consen 508 LLKTLPTKLQLDLAID--VNYSILSKVQLFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQVLGGP 585 (815)
T ss_pred HHHhcchhheeeeeEE--eehhhhhHHHHhhhhHHHHHHHHHHHhhceeecCCceeeecccccceeEEeecceEEEecCC
Confidence 5789999999444444 66789999999999999999999999999999999999999999999999999999999753
Q ss_pred CCceeeeeeeeCCCCeeecccccCccccccCCCCcceeEEEecceeEEEEEeHHHHHHHHhhCCCCCCchhHHHhhh
Q 038042 83 IRTTTFSFNASNDGHFCGEELLPRASVLQLGGLPISTRTVIAHTPVEAFVIEADDWKQLVNSFMLPDDQLPYIFRLT 159 (162)
Q Consensus 83 ~~~~~~~~~~~~~G~~~Ge~~l~~~~~~~~~~~~~~~~tv~a~~~~~l~~i~~~~~~~l~~~~p~~~~~l~~~~~~~ 159 (162)
..+..+ ..+.+|.+|||++|+.-. ...+|+++|.|.+.|.++.+++.++++++..+|-+.+.|+..+|.+
T Consensus 586 ~~~~Vl--~tL~~GsVFGEISLLaig-----G~nRRTAnV~a~Gf~nLfvL~KkdLneil~~YP~sq~iLrkkAr~l 655 (815)
T KOG0499|consen 586 DGTKVL--VTLKAGSVFGEISLLAIG-----GGNRRTANVVAHGFANLFVLDKKDLNEILVHYPDSQRILRKKARVL 655 (815)
T ss_pred CCCEEE--EEecccceeeeeeeeeec-----CCCccchhhhhcccceeeEecHhHHHHHHHhCccHHHHHHHHHHHH
Confidence 322222 579999999999998543 2228899999999999999999999999999995555666555543
No 8
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.72 E-value=7.5e-17 Score=123.03 Aligned_cols=110 Identities=15% Similarity=0.140 Sum_probs=92.4
Q ss_pred hhhCccccccCHHHHHHHHhhcee-eeecCCCEEEecCCccCeEEEEEeeEEEEeeec--CCceeeeeeeeCCCCeeecc
Q 038042 26 LVLHQVFDRIDEHFLNAMLDLLKL-VPYTERSILVHEGSGVEKMFFIVRGKIWSEPTT--IRTTTFSFNASNDGHFCGEE 102 (162)
Q Consensus 26 L~~~~lF~~l~~~~l~~l~~~~~~-~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~--~~~~~~~~~~~~~G~~~Ge~ 102 (162)
+++.+.|..+++++++.|...... ..|++|+.|+++|+.++++|+|.+|.|+++..+ |++..+ ..+.||++||+.
T Consensus 15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~--~~~~~gd~~g~~ 92 (235)
T PRK11161 15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQIT--GFHLAGDLVGFD 92 (235)
T ss_pred ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEEE--EeccCCceeccc
Confidence 444566667999999999998864 689999999999999999999999999999864 444333 567899999986
Q ss_pred cccCccccccCCCCcceeEEEecceeEEEEEeHHHHHHHHhhCC
Q 038042 103 LLPRASVLQLGGLPISTRTVIAHTPVEAFVIEADDWKQLVNSFM 146 (162)
Q Consensus 103 ~l~~~~~~~~~~~~~~~~tv~a~~~~~l~~i~~~~~~~l~~~~p 146 (162)
++... +++.+++|.++++++.+|++.|.+++.++|
T Consensus 93 ~~~~~---------~~~~~~~a~~~~~i~~ip~~~f~~l~~~~p 127 (235)
T PRK11161 93 AIGSG---------QHPSFAQALETSMVCEIPFETLDDLSGKMP 127 (235)
T ss_pred cccCC---------CCcceEEEeccEEEEEEEHHHHHHHHHHCh
Confidence 65422 344689999999999999999999999999
No 9
>PLN02868 acyl-CoA thioesterase family protein
Probab=99.70 E-value=3.9e-16 Score=128.60 Aligned_cols=127 Identities=15% Similarity=0.192 Sum_probs=105.7
Q ss_pred hHhhhhhCccccccCHHHHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeeec
Q 038042 22 PLHSLVLHQVFDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCGE 101 (162)
Q Consensus 22 ~~~~L~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~Ge 101 (162)
..++|+++++|++++++++++++..++.+.|++|++|+++|+.++.+|+|++|.|+++..++... ..+..+++|++||+
T Consensus 6 ~~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge-~~l~~l~~Gd~fG~ 84 (413)
T PLN02868 6 VVEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEES-RPEFLLKRYDYFGY 84 (413)
T ss_pred HHHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCCc-EEEEEeCCCCEeeh
Confidence 45778999999999999999999999999999999999999999999999999999998654222 22367899999997
Q ss_pred ccccCccccccCCCCcceeEEEecceeEEEEEeHHHHHHHHhhCCCCCCchhHHHhhh
Q 038042 102 ELLPRASVLQLGGLPISTRTVIAHTPVEAFVIEADDWKQLVNSFMLPDDQLPYIFRLT 159 (162)
Q Consensus 102 ~~l~~~~~~~~~~~~~~~~tv~a~~~~~l~~i~~~~~~~l~~~~p~~~~~l~~~~~~~ 159 (162)
. + .+ . ++..+++|.++|+++.++++.|.-+...++...++....++.+
T Consensus 85 ~-l-~~-------~-~~~~~~~A~~d~~v~~ip~~~~~~~~~~~~~~~~~~~~~~~~l 132 (413)
T PLN02868 85 G-L-SG-------S-VHSADVVAVSELTCLVLPHEHCHLLSPKSIWDSDKTPKDCSLV 132 (413)
T ss_pred h-h-CC-------C-CcccEEEECCCEEEEEEcHHHHhhhcccccccccCChhhHHHH
Confidence 4 3 32 1 6789999999999999999999998888775555555444443
No 10
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.69 E-value=2.2e-16 Score=102.59 Aligned_cols=89 Identities=21% Similarity=0.257 Sum_probs=77.1
Q ss_pred eeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeeecccccCccccccCCCCcceeEEEecceeE
Q 038042 50 VPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCGEELLPRASVLQLGGLPISTRTVIAHTPVE 129 (162)
Q Consensus 50 ~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~Ge~~l~~~~~~~~~~~~~~~~tv~a~~~~~ 129 (162)
++|++|++|+++|+.++++|+|++|.++++..+..........+.+|++||+..++... ++..++.|.++|+
T Consensus 2 ~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~--------~~~~~~~a~~~~~ 73 (91)
T PF00027_consen 2 KTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFGEIELLTGK--------PSPFTVIALTDSE 73 (91)
T ss_dssp EEESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEESGHHHHHTS--------BBSSEEEESSSEE
T ss_pred eEECCCCEEEeCCCcCCEEEEEEECceEEEeceecceeeeecceeeeccccceeecCCC--------ccEEEEEEccCEE
Confidence 68999999999999999999999999999987542222223678999999998877542 7889999999999
Q ss_pred EEEEeHHHHHHHHhhCC
Q 038042 130 AFVIEADDWKQLVNSFM 146 (162)
Q Consensus 130 l~~i~~~~~~~l~~~~p 146 (162)
++.+|+++|.++++++|
T Consensus 74 ~~~i~~~~~~~~~~~~p 90 (91)
T PF00027_consen 74 VLRIPREDFLQLLQQDP 90 (91)
T ss_dssp EEEEEHHHHHHHHHHSH
T ss_pred EEEEeHHHHHHHHHhCc
Confidence 99999999999999886
No 11
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.69 E-value=1e-15 Score=102.98 Aligned_cols=110 Identities=19% Similarity=0.284 Sum_probs=93.5
Q ss_pred cccccCHHHHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeeecccccCcccc
Q 038042 31 VFDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCGEELLPRASVL 110 (162)
Q Consensus 31 lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~Ge~~l~~~~~~ 110 (162)
+|.+++++.++.+.+.++.+.|++|++|+++|++++++|+|.+|.++++..+.......+..+.+|++||+..++..
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~--- 77 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGELALLTN--- 77 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechhhhccC---
Confidence 47899999999999999999999999999999999999999999999998743212223467899999999877621
Q ss_pred ccCCCCcceeEEEecceeEEEEEeHHHHHHHHhhCC
Q 038042 111 QLGGLPISTRTVIAHTPVEAFVIEADDWKQLVNSFM 146 (162)
Q Consensus 111 ~~~~~~~~~~tv~a~~~~~l~~i~~~~~~~l~~~~p 146 (162)
... ++..+++|.++|.++.++.+.+.+...+++
T Consensus 78 --~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 110 (120)
T smart00100 78 --SRR-AASATAVALELATLLRIDFRDFLQLLQENP 110 (120)
T ss_pred --CCc-ccceEEEEEeeEEEEccCHHHHHHHHHHhH
Confidence 112 667889999999999999999999998887
No 12
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.67 E-value=2.4e-16 Score=119.97 Aligned_cols=97 Identities=19% Similarity=0.183 Sum_probs=84.3
Q ss_pred HHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeeec--CCceeeeeeeeCCCCeeecccccCccccccCCCCc
Q 038042 40 LNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTT--IRTTTFSFNASNDGHFCGEELLPRASVLQLGGLPI 117 (162)
Q Consensus 40 l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~--~~~~~~~~~~~~~G~~~Ge~~l~~~~~~~~~~~~~ 117 (162)
...+.+.++.+.|++|++|+++|++++++|+|++|.|+++..+ |+...+ ..+.||++||+.+++... +
T Consensus 24 ~~~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~~--~~~~~g~~~G~~~~~~~~--------~ 93 (226)
T PRK10402 24 SFDVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSLI--DFFAAPCFIGEIELIDKD--------H 93 (226)
T ss_pred CHHHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEeee--eecCCCCeEEeehhhcCC--------C
Confidence 3457788899999999999999999999999999999999763 444333 678999999998776432 7
Q ss_pred ceeEEEecceeEEEEEeHHHHHHHHhhCC
Q 038042 118 STRTVIAHTPVEAFVIEADDWKQLVNSFM 146 (162)
Q Consensus 118 ~~~tv~a~~~~~l~~i~~~~~~~l~~~~p 146 (162)
++.+++|.++|+++.+++++|.+++.++|
T Consensus 94 ~~~~~~A~~~~~i~~i~~~~~~~ll~~~p 122 (226)
T PRK10402 94 ETKAVQAIEECWCLALPMKDCRPLLLNDA 122 (226)
T ss_pred CCccEEEeccEEEEEEEHHHHHHHHhcCH
Confidence 78899999999999999999999999999
No 13
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.67 E-value=7.1e-16 Score=114.62 Aligned_cols=111 Identities=19% Similarity=0.269 Sum_probs=96.7
Q ss_pred hhhCccccccCHHHHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeee--cCCceeeeeeeeCCCCeeeccc
Q 038042 26 LVLHQVFDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPT--TIRTTTFSFNASNDGHFCGEEL 103 (162)
Q Consensus 26 L~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~--~~~~~~~~~~~~~~G~~~Ge~~ 103 (162)
+...+.|..++.+....+......+.|++|+.|+.+|++++.+|+|.+|.++++.. +|+...+ ..++||++||+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~~--~~~~~g~~fg~~~ 79 (214)
T COG0664 2 LKENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREIIL--GFLGPGDFFGELA 79 (214)
T ss_pred cccccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEEE--EEecCCchhhhHH
Confidence 34567777888888888888889999999999999999999999999999999987 3444444 6799999999998
Q ss_pred ccCccccccCCCCcceeEEEecceeEEEEEeHHHHHHHHhhCC
Q 038042 104 LPRASVLQLGGLPISTRTVIAHTPVEAFVIEADDWKQLVNSFM 146 (162)
Q Consensus 104 l~~~~~~~~~~~~~~~~tv~a~~~~~l~~i~~~~~~~l~~~~p 146 (162)
++.+. +++.++.|.+||+++.++++.|.+++.+.|
T Consensus 80 l~~~~--------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p 114 (214)
T COG0664 80 LLGGD--------PRSASAVALTDVEVLEIPRKDFLELLAESP 114 (214)
T ss_pred HhcCC--------CccceEEEcceEEEEEecHHHHHHHHhhCc
Confidence 87642 688999999999999999999999999855
No 14
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.63 E-value=1.6e-15 Score=125.72 Aligned_cols=114 Identities=18% Similarity=0.239 Sum_probs=102.4
Q ss_pred chHhhhhhCccccccCHHHHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 21 TPLHSLVLHQVFDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 21 ~~~~~L~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
...+++.++|+|+.++++++++|...+...+|++|+.|+..|.+..++|+|.+|.|++...+|. .+ ..+..||.||
T Consensus 4 ~~~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~~~g~--v~--~~~~~gdlFg 79 (610)
T COG2905 4 EPDQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRSDGGE--VL--DRLAAGDLFG 79 (610)
T ss_pred CHHHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEcCCCe--ee--eeeccCcccc
Confidence 4568999999999999999999999999999999999999999999999999999999997773 33 6789999999
Q ss_pred cccccCccccccCCCCcceeEEEecceeEEEEEeHHHHHHHHhhCC
Q 038042 101 EELLPRASVLQLGGLPISTRTVIAHTPVEAFVIEADDWKQLVNSFM 146 (162)
Q Consensus 101 e~~l~~~~~~~~~~~~~~~~tv~a~~~~~l~~i~~~~~~~l~~~~p 146 (162)
-.+++... ....++.|.+|+.+|.||++.|.+++.++|
T Consensus 80 ~~~l~~~~--------~~~~~~~aeedsl~y~lp~s~F~ql~~~n~ 117 (610)
T COG2905 80 FSSLFTEL--------NKQRYMAAEEDSLCYLLPKSVFMQLMEENP 117 (610)
T ss_pred chhhcccC--------CCcceeEeeccceEEecCHHHHHHHHHhCc
Confidence 98887653 334567888899999999999999999999
No 15
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.56 E-value=3.6e-15 Score=122.88 Aligned_cols=117 Identities=21% Similarity=0.407 Sum_probs=103.1
Q ss_pred chHhhhhhCccccccCHHHHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeeec-CCceeeeeeeeCCCCee
Q 038042 21 TPLHSLVLHQVFDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTT-IRTTTFSFNASNDGHFC 99 (162)
Q Consensus 21 ~~~~~L~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~-~~~~~~~~~~~~~G~~~ 99 (162)
-+..+|+++|+|+++|++-+..+++.++..+|.+|++|+++|+.++.+|+|.+|.|.+...+ +......+..++.||+|
T Consensus 269 ~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kGd~F 348 (732)
T KOG0614|consen 269 QYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKGDYF 348 (732)
T ss_pred HHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCchhHHhhccccchh
Confidence 47789999999999999999999999999999999999999999999999999999999764 32333344789999999
Q ss_pred ecccccCccccccCCCCcceeEEEecce-eEEEEEeHHHHHHHHhhC
Q 038042 100 GEELLPRASVLQLGGLPISTRTVIAHTP-VEAFVIEADDWKQLVNSF 145 (162)
Q Consensus 100 Ge~~l~~~~~~~~~~~~~~~~tv~a~~~-~~l~~i~~~~~~~l~~~~ 145 (162)
||-+|+... .++++++|.++ ++++.++++.|..++...
T Consensus 349 GE~al~~ed--------vRtAniia~~~gv~cl~lDresF~~liG~l 387 (732)
T KOG0614|consen 349 GERALLGED--------VRTANIIAQAPGVECLTLDRESFKKLIGDL 387 (732)
T ss_pred hHHHhhccC--------ccchhhhccCCCceEEEecHHHHHHhcccH
Confidence 999998653 67899999988 999999999999887654
No 16
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=99.55 E-value=4.4e-14 Score=107.86 Aligned_cols=94 Identities=13% Similarity=0.044 Sum_probs=77.7
Q ss_pred HhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeeec--CCceeeeeeeeCCCCeeecccccCccccccCCCCcceeE
Q 038042 44 LDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTT--IRTTTFSFNASNDGHFCGEELLPRASVLQLGGLPISTRT 121 (162)
Q Consensus 44 ~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~--~~~~~~~~~~~~~G~~~Ge~~l~~~~~~~~~~~~~~~~t 121 (162)
...++.+.|++|++|+.+|+.++++|+|++|.|+++..+ |++..+ ..+.+|++||+.. . . ++..+
T Consensus 35 ~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i~--~~~~~Gd~fG~~~---~-------~-~~~~~ 101 (230)
T PRK09391 35 GLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQIG--AFHLPGDVFGLES---G-------S-THRFT 101 (230)
T ss_pred cceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEEE--EEecCCceecccC---C-------C-cCCeE
Confidence 344567999999999999999999999999999999763 443333 5789999999631 1 1 56789
Q ss_pred EEecceeEEEEEeHHHHHHHHhhCC-CCCC
Q 038042 122 VIAHTPVEAFVIEADDWKQLVNSFM-LPDD 150 (162)
Q Consensus 122 v~a~~~~~l~~i~~~~~~~l~~~~p-~~~~ 150 (162)
++|+++|+++.+++++|++++.++| +...
T Consensus 102 ~~A~~ds~v~~i~~~~f~~l~~~~p~l~~~ 131 (230)
T PRK09391 102 AEAIVDTTVRLIKRRSLEQAAATDVDVARA 131 (230)
T ss_pred EEEcCceEEEEEEHHHHHHHHhhChHHHHH
Confidence 9999999999999999999999999 4443
No 17
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=99.52 E-value=8.2e-14 Score=102.94 Aligned_cols=84 Identities=15% Similarity=0.166 Sum_probs=70.7
Q ss_pred CCEEEecCCccCeEEEEEeeEEEEeee--cCCceeeeeeeeCCCCeeecccccCccccccCCCCcceeEEEecceeEEEE
Q 038042 55 RSILVHEGSGVEKMFFIVRGKIWSEPT--TIRTTTFSFNASNDGHFCGEELLPRASVLQLGGLPISTRTVIAHTPVEAFV 132 (162)
Q Consensus 55 ge~I~~~G~~~~~ly~I~~G~v~v~~~--~~~~~~~~~~~~~~G~~~Ge~~l~~~~~~~~~~~~~~~~tv~a~~~~~l~~ 132 (162)
|+.|+++|++++++|+|.+|.|+++.. +|++.. ...++||++||+.+++.+. ..++..+++|.++|+++.
T Consensus 1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e~~--l~~~~~g~~~G~~~~~~~~------~~~~~~~~~A~~~~~v~~ 72 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRGAVKLSRVYESGEEIT--VALLRENSVFGVLSLITGH------RSDRFYHAVAFTRVELLA 72 (193)
T ss_pred CCceecCCCCCCcEEEEEecEEEEEEeCCCCcEee--eEEccCCCEeeeeeeccCC------CCccceEEEEecceEEEE
Confidence 789999999999999999999999976 344433 4789999999998777531 113457899999999999
Q ss_pred EeHHHHHHHHhhCC
Q 038042 133 IEADDWKQLVNSFM 146 (162)
Q Consensus 133 i~~~~~~~l~~~~p 146 (162)
+|+++|++++.++|
T Consensus 73 i~~~~~~~l~~~~p 86 (193)
T TIGR03697 73 VPIEQVEKAIEEDP 86 (193)
T ss_pred eeHHHHHHHHHHCh
Confidence 99999999999999
No 18
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=99.52 E-value=2.6e-14 Score=112.70 Aligned_cols=110 Identities=15% Similarity=0.198 Sum_probs=98.8
Q ss_pred HhhhhhCccccccCHHHHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeeecc
Q 038042 23 LHSLVLHQVFDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCGEE 102 (162)
Q Consensus 23 ~~~L~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~Ge~ 102 (162)
...+++.-+|..|+++++.++.+.+....+++|+.|++||+.++++|+|-+|.+.++.. + ..+ ..+.||..|||.
T Consensus 121 ~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv~-~--~~v--~~~~~g~sFGEl 195 (368)
T KOG1113|consen 121 EEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYVN-G--TYV--TTYSPGGSFGEL 195 (368)
T ss_pred HHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEEC-C--eEE--eeeCCCCchhhh
Confidence 45788999999999999999999999999999999999999999999999999999985 3 233 578999999999
Q ss_pred cccCccccccCCCCcceeEEEecceeEEEEEeHHHHHHHHhhC
Q 038042 103 LLPRASVLQLGGLPISTRTVIAHTPVEAFVIEADDWKQLVNSF 145 (162)
Q Consensus 103 ~l~~~~~~~~~~~~~~~~tv~a~~~~~l~~i~~~~~~~l~~~~ 145 (162)
+|+.+. |+.+|+.|.+++.+|.+++..|..++-.+
T Consensus 196 ALmyn~--------PRaATv~a~t~~klWgldr~SFrrIi~~s 230 (368)
T KOG1113|consen 196 ALMYNP--------PRAATVVAKSLKKLWGLDRTSFRRIIMKS 230 (368)
T ss_pred HhhhCC--------CcccceeeccccceEEEeeceeEEEeecc
Confidence 999763 89999999999999999999887765543
No 19
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=99.48 E-value=3.2e-13 Score=100.62 Aligned_cols=82 Identities=17% Similarity=0.197 Sum_probs=68.5
Q ss_pred hceeeeecCCCEEEecCC--ccCeEEEEEeeEEEEeee--cCCceeeeeeeeCCCCeeecccccCccccccCCCCcceeE
Q 038042 46 LLKLVPYTERSILVHEGS--GVEKMFFIVRGKIWSEPT--TIRTTTFSFNASNDGHFCGEELLPRASVLQLGGLPISTRT 121 (162)
Q Consensus 46 ~~~~~~~~~ge~I~~~G~--~~~~ly~I~~G~v~v~~~--~~~~~~~~~~~~~~G~~~Ge~~l~~~~~~~~~~~~~~~~t 121 (162)
.++...|++|++|+.+|+ +++++|+|++|.|+++.. ||++..+ ..+.|||+||+.+++.. +++.+
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l--~~~~~Gd~~G~~~~~~~---------~~~~~ 73 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTL--RYVRPGEYFGEEALAGA---------ERAYF 73 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEE--EEecCCCeechHHhcCC---------CCCce
Confidence 356789999999999999 779999999999999976 4554443 67899999998655422 56788
Q ss_pred EEecceeEEEEEeHHHH
Q 038042 122 VIAHTPVEAFVIEADDW 138 (162)
Q Consensus 122 v~a~~~~~l~~i~~~~~ 138 (162)
++|.++|+++.++++.|
T Consensus 74 ~~A~~~~~v~~i~~~~~ 90 (202)
T PRK13918 74 AEAVTDSRIDVLNPALM 90 (202)
T ss_pred EEEcCceEEEEEEHHHc
Confidence 99999999999998876
No 20
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.41 E-value=1.4e-13 Score=113.72 Aligned_cols=112 Identities=15% Similarity=0.234 Sum_probs=100.3
Q ss_pred hHhhhhhCccccccCHHHHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeeec
Q 038042 22 PLHSLVLHQVFDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCGE 101 (162)
Q Consensus 22 ~~~~L~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~Ge 101 (162)
..+.+.......+|+++++..+++.+.++.|++|+.|++||++++++|++.+|.+.+... |+ .+ ..+++|.+|||
T Consensus 152 I~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~~-g~--ll--~~m~~gtvFGE 226 (732)
T KOG0614|consen 152 IRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSRE-GK--LL--GKMGAGTVFGE 226 (732)
T ss_pred HHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEeeC-Ce--ee--eccCCchhhhH
Confidence 345677888899999999999999999999999999999999999999999999999984 42 33 67999999999
Q ss_pred ccccCccccccCCCCcceeEEEecceeEEEEEeHHHHHHHHhhCC
Q 038042 102 ELLPRASVLQLGGLPISTRTVIAHTPVEAFVIEADDWKQLVNSFM 146 (162)
Q Consensus 102 ~~l~~~~~~~~~~~~~~~~tv~a~~~~~l~~i~~~~~~~l~~~~p 146 (162)
.+++.+- +++++|+|++++.+|.|+++.|+.++...-
T Consensus 227 LAILync--------tRtAsV~alt~~~lWaidR~vFq~IM~~tg 263 (732)
T KOG0614|consen 227 LAILYNC--------TRTASVRALTDVRLWAIDREVFQAIMMRTG 263 (732)
T ss_pred HHHHhCC--------cchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 9998652 889999999999999999999999988753
No 21
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=99.31 E-value=3.4e-12 Score=100.79 Aligned_cols=114 Identities=14% Similarity=0.187 Sum_probs=102.0
Q ss_pred chHhhhhhCccccccCHHHHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 21 TPLHSLVLHQVFDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 21 ~~~~~L~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
++.++|.+.|++..+...+...+++.+.+..|++|+.|+.+|+.++.+|+|.+|+|.+...-+. +.+ .++.||+||
T Consensus 237 My~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~~~---v~v-kl~~~dyfg 312 (368)
T KOG1113|consen 237 MYEPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKRDG---VEV-KLKKGDYFG 312 (368)
T ss_pred hhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhccCC---eEE-Eechhhhcc
Confidence 5678999999999999999999999999999999999999999999999999999999865221 333 789999999
Q ss_pred cccccCccccccCCCCcceeEEEecceeEEEEEeHHHHHHHHhhCC
Q 038042 101 EELLPRASVLQLGGLPISTRTVIAHTPVEAFVIEADDWKQLVNSFM 146 (162)
Q Consensus 101 e~~l~~~~~~~~~~~~~~~~tv~a~~~~~l~~i~~~~~~~l~~~~p 146 (162)
|.+++.+. |+.+++.|.+...+..++++.|+.|+....
T Consensus 313 e~al~~~~--------pr~Atv~a~~~~kc~~~dk~~ferllgpc~ 350 (368)
T KOG1113|consen 313 ELALLKNL--------PRAATVVAKGRLKCAKLDKPRFERLLGPCQ 350 (368)
T ss_pred hHHHHhhc--------hhhceeeccCCceeeeeChHHHHHHhhHHH
Confidence 99998653 888999999999999999999999987643
No 22
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=99.21 E-value=1.4e-11 Score=102.87 Aligned_cols=127 Identities=20% Similarity=0.258 Sum_probs=109.8
Q ss_pred ccCCcCce--eeeeccccchHhhhhhCccccccCHHHHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeeec
Q 038042 5 FKLPCGLN--IITHANTLTPLHSLVLHQVFDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTT 82 (162)
Q Consensus 5 ~~lp~~~~--~~~~~~~~~~~~~L~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~ 82 (162)
.--|++++ ||.|.| ...+..+|.|.--++.-+..|+-.++..+..||+.|.+.|+..+.++||++|+.++...|
T Consensus 531 ~~CPKDMkADICVHLN----RKVFnEHpaFRLASDGCLRaLAm~f~~~H~APGDLlYHtGESvDaLcFvVsGSLEVIQDD 606 (971)
T KOG0501|consen 531 GYCPKDMKADICVHLN----RKVFNEHPAFRLASDGCLRALAMEFQTNHCAPGDLLYHTGESVDALCFVVSGSLEVIQDD 606 (971)
T ss_pred hhCccccccceeeecc----hhhhccCcceeeccchhHHHHHHHHHhccCCCcceeeecCCccceEEEEEecceEEeecC
Confidence 33488888 999955 788999999999999999999999999999999999999999999999999999999854
Q ss_pred CCceeeeeeeeCCCCeeecccccCccccccCCCCcceeEEEecceeEEEEEeHHHHHHHHhhCC
Q 038042 83 IRTTTFSFNASNDGHFCGEELLPRASVLQLGGLPISTRTVIAHTPVEAFVIEADDWKQLVNSFM 146 (162)
Q Consensus 83 ~~~~~~~~~~~~~G~~~Ge~~l~~~~~~~~~~~~~~~~tv~a~~~~~l~~i~~~~~~~l~~~~p 146 (162)
. .+ ++++.||+||..++-.+. .+.+.++++|++.|.+..|.++.+.+++.=+.
T Consensus 607 E---VV--AILGKGDVFGD~FWK~~t------~~qs~ANVRALTYcDLH~IKrd~Ll~VLdFYt 659 (971)
T KOG0501|consen 607 E---VV--AILGKGDVFGDEFWKENT------LGQSAANVRALTYCDLHMIKRDKLLKVLDFYT 659 (971)
T ss_pred c---EE--EEeecCccchhHHhhhhh------hhhhhhhhhhhhhhhhhHHhHHHHHHHHHHHH
Confidence 3 33 789999999987764332 12577899999999999999999998877543
No 23
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=98.54 E-value=1.9e-08 Score=87.80 Aligned_cols=98 Identities=16% Similarity=0.189 Sum_probs=82.2
Q ss_pred HHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeee-c-CCceeeeeeeeCCCCeeecccccCccccccCCCC
Q 038042 39 FLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPT-T-IRTTTFSFNASNDGHFCGEELLPRASVLQLGGLP 116 (162)
Q Consensus 39 ~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~-~-~~~~~~~~~~~~~G~~~Ge~~l~~~~~~~~~~~~ 116 (162)
.+..+-..+.+....+|+.++++||..+.+|+|+.|+++.... + |+...+ ..++.||.+|+.-.+...
T Consensus 500 ~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k~~i~--~EygrGd~iG~~E~lt~~-------- 569 (1158)
T KOG2968|consen 500 FLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSGGKKEIV--GEYGRGDLIGEVEMLTKQ-------- 569 (1158)
T ss_pred HHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhccCccchhh--hhccCcceeehhHHhhcC--------
Confidence 3444555567899999999999999999999999999999865 2 333333 789999999997665442
Q ss_pred cceeEEEecceeEEEEEeHHHHHHHHhhCC
Q 038042 117 ISTRTVIAHTPVEAFVIEADDWKQLVNSFM 146 (162)
Q Consensus 117 ~~~~tv~a~~~~~l~~i~~~~~~~l~~~~p 146 (162)
++..|+.|+-++++.+||..-|+-+..++|
T Consensus 570 ~R~tTv~AvRdSelariPe~l~~~ik~ryP 599 (1158)
T KOG2968|consen 570 PRATTVMAVRDSELARIPEGLLNFIKLRYP 599 (1158)
T ss_pred CccceEEEEeehhhhhccHHHHHHHHHhcc
Confidence 778899999999999999999999999999
No 24
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=98.34 E-value=9.4e-06 Score=57.68 Aligned_cols=105 Identities=8% Similarity=0.066 Sum_probs=78.8
Q ss_pred ccCHHHHHHHHhh-ceeeeecCCCEEEecC-CccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeeecccccCccccc
Q 038042 34 RIDEHFLNAMLDL-LKLVPYTERSILVHEG-SGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCGEELLPRASVLQ 111 (162)
Q Consensus 34 ~l~~~~l~~l~~~-~~~~~~~~ge~I~~~G-~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~Ge~~l~~~~~~~ 111 (162)
+++..+...|+.. .+.+...+|+.-.-|| .+.+.+.++++|++++.. +|+ .. ..+.|.++....-+....
T Consensus 14 ~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~-~g~--fL--H~I~p~qFlDSPEW~s~~--- 85 (153)
T PF04831_consen 14 KVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSC-DGR--FL--HYIYPYQFLDSPEWESLR--- 85 (153)
T ss_pred CCCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEE-CCE--ee--EeecccccccChhhhccc---
Confidence 4588999999998 6779999999999998 577999999999999998 442 11 344555554432221110
Q ss_pred cCCCCcceeEEEecceeEEEEEeHHHHHHHHhhCC
Q 038042 112 LGGLPISTRTVIAHTPVEAFVIEADDWKQLVNSFM 146 (162)
Q Consensus 112 ~~~~~~~~~tv~a~~~~~l~~i~~~~~~~l~~~~p 146 (162)
-.....-.+|++|.++|..++++++.+.-++.+.|
T Consensus 86 ~s~~~~FQVTitA~~~Cryl~W~R~kL~~~l~~~~ 120 (153)
T PF04831_consen 86 PSEDDKFQVTITAEEDCRYLCWPREKLYLLLAKDP 120 (153)
T ss_pred cCCCCeEEEEEEEcCCcEEEEEEHHHHHHHHhhCH
Confidence 00111456899999999999999999999999998
No 25
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=98.07 E-value=0.00012 Score=55.07 Aligned_cols=95 Identities=9% Similarity=0.029 Sum_probs=70.5
Q ss_pred HHHHHhhceeeeecCCCEE-EecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeeecccccCccccccCCCCcc
Q 038042 40 LNAMLDLLKLVPYTERSIL-VHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCGEELLPRASVLQLGGLPIS 118 (162)
Q Consensus 40 l~~l~~~~~~~~~~~ge~I-~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~Ge~~l~~~~~~~~~~~~~~ 118 (162)
...|....+...+++|..+ ..+......++++.+|.+.+...|+ ..+ ....+..+||-.....+. ..
T Consensus 15 ~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsirr~d~--ll~--~t~~aP~IlGl~~~~~~~--------~~ 82 (207)
T PRK11832 15 DKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLRREEN--VLI--GITQAPYIMGLADGLMKN--------DI 82 (207)
T ss_pred HHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEEecCC--eEE--EeccCCeEeecccccCCC--------Cc
Confidence 3445555677999999997 5444445789999999999965454 223 456778999964333321 33
Q ss_pred eeEEEecceeEEEEEeHHHHHHHHhhCC
Q 038042 119 TRTVIAHTPVEAFVIEADDWKQLVNSFM 146 (162)
Q Consensus 119 ~~tv~a~~~~~l~~i~~~~~~~l~~~~p 146 (162)
...+.|.++|+++.+|.++|.++++++.
T Consensus 83 ~~~l~ae~~c~~~~i~~~~~~~iie~~~ 110 (207)
T PRK11832 83 PYKLISEGNCTGYHLPAKQTITLIEQNQ 110 (207)
T ss_pred eEEEEEcCccEEEEeeHHHHHHHHHHhc
Confidence 4679999999999999999999999986
No 26
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=98.05 E-value=1.2e-05 Score=70.88 Aligned_cols=114 Identities=10% Similarity=0.115 Sum_probs=86.2
Q ss_pred HHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeeec--CCceeeeeeeeCCCCeeeccc-ccCccccccCCC--Cc
Q 038042 43 MLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTT--IRTTTFSFNASNDGHFCGEEL-LPRASVLQLGGL--PI 117 (162)
Q Consensus 43 l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~--~~~~~~~~~~~~~G~~~Ge~~-l~~~~~~~~~~~--~~ 117 (162)
+..+.....+..|++|++.|++.+.+|.+.+|...+...+ |++..+ ..+.||+-|-... ++.. +... ..
T Consensus 111 L~rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~~~~~g~~~ll--k~V~~G~~~tSllSiLd~----l~~~ps~~ 184 (1158)
T KOG2968|consen 111 LDRHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHIRNGDGKEYLL--KTVPPGGSFTSLLSILDS----LPGFPSLS 184 (1158)
T ss_pred echhhhhhcccCCceeccCCCCCceEEEEeccceEEEecCCCCceeeE--eeccCCCchHhHHHHHHh----ccCCCccc
Confidence 3377788999999999999999999999999999988764 455454 6789997665321 1100 0111 13
Q ss_pred ceeEEEecceeEEEEEeHHHHHHHHhhCC-CCCCchhHHHhhhccC
Q 038042 118 STRTVIAHTPVEAFVIEADDWKQLVNSFM-LPDDQLPYIFRLTQKI 162 (162)
Q Consensus 118 ~~~tv~a~~~~~l~~i~~~~~~~l~~~~p-~~~~~l~~~~~~~~~~ 162 (162)
.+..+.|+++|.+..+|.+.|.++..++| ...+..|..+-++.|+
T Consensus 185 ~~i~akA~t~~tv~~~p~~sF~~~~~k~P~s~iriiQvvmTRLq~v 230 (1158)
T KOG2968|consen 185 RTIAAKAATDCTVARIPYTSFRESFHKNPESSIRIIQVVMTRLQRV 230 (1158)
T ss_pred ceeeeeeecCceEEEeccchhhhhhccChHHHHHHHHHHHHHHHHh
Confidence 46778999999999999999999999999 5566666676666653
No 27
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=97.75 E-value=6.5e-05 Score=64.75 Aligned_cols=127 Identities=14% Similarity=0.186 Sum_probs=94.5
Q ss_pred ccccCCcCceeeeeccccchHhhhhhCccccccCHHHHHHHHhhcee-eeecCCCEEEecCCccCeEEEEEeeEEEEeee
Q 038042 3 CLFKLPCGLNIITHANTLTPLHSLVLHQVFDRIDEHFLNAMLDLLKL-VPYTERSILVHEGSGVEKMFFIVRGKIWSEPT 81 (162)
Q Consensus 3 ~~~~lp~~~~~~~~~~~~~~~~~L~~~~lF~~l~~~~l~~l~~~~~~-~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~ 81 (162)
||.+=|..=. +-+.+..++++.+.|-|.+|+..-..+|+..+.. ..=.+|.+|+..|+..+.++.|+.|.|++...
T Consensus 263 CLEKeP~drt---ddDieqLLeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~P 339 (1283)
T KOG3542|consen 263 CLEKEPSDRT---DDDIEQLLEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVKP 339 (1283)
T ss_pred HHhcCCcccc---hHHHHHHHHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEecC
Confidence 6666665544 1111244789999999999999999999998875 56678999999999999999999999999999
Q ss_pred cCCceeeeeeeeCCCCeeecccccCccccccCCCCcceeEEEecceeEEEEEeHHHHHHHHhh
Q 038042 82 TIRTTTFSFNASNDGHFCGEELLPRASVLQLGGLPISTRTVIAHTPVEAFVIEADDWKQLVNS 144 (162)
Q Consensus 82 ~~~~~~~~~~~~~~G~~~Ge~~l~~~~~~~~~~~~~~~~tv~a~~~~~l~~i~~~~~~~l~~~ 144 (162)
||+. ..+.-|+-||...-+... + --..--+-+.||+..++.-.++=.++..
T Consensus 340 dGk~-----e~l~mGnSFG~~PT~dkq------y-m~G~mRTkVDDCqFVciaqqDycrIln~ 390 (1283)
T KOG3542|consen 340 DGKR-----EELKMGNSFGAEPTPDKQ------Y-MIGEMRTKVDDCQFVCIAQQDYCRILNT 390 (1283)
T ss_pred CCce-----EEeecccccCCCCCcchh------h-hhhhhheecccceEEEeehhhHHHHHHH
Confidence 9954 345568999964332210 0 0011124568999999999999888765
No 28
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=96.08 E-value=0.011 Score=51.60 Aligned_cols=90 Identities=17% Similarity=0.191 Sum_probs=69.7
Q ss_pred hhhhCccccccCHHHHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeeecccc
Q 038042 25 SLVLHQVFDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCGEELL 104 (162)
Q Consensus 25 ~L~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~Ge~~l 104 (162)
.|++...|.+|-...+..++..+....|+...++|+.|+.++.+|++++|.|-+.-. .+-|-..||-.
T Consensus 38 ~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~gq----------i~mp~~~fgkr-- 105 (1283)
T KOG3542|consen 38 QLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVEGQ----------IYMPYGCFGKR-- 105 (1283)
T ss_pred HHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEeecc----------eecCccccccc--
Confidence 577889999999999999999999999999999999999999999999999765421 12244456631
Q ss_pred cCccccccCCCCcceeEEEecceeEEEEEeH
Q 038042 105 PRASVLQLGGLPISTRTVIAHTPVEAFVIEA 135 (162)
Q Consensus 105 ~~~~~~~~~~~~~~~~tv~a~~~~~l~~i~~ 135 (162)
++. .++.++..+++++.+.++.
T Consensus 106 -------~g~--~r~~nclllq~semivid~ 127 (1283)
T KOG3542|consen 106 -------TGQ--NRTHNCLLLQESEMIVIDY 127 (1283)
T ss_pred -------ccc--ccccceeeecccceeeeec
Confidence 122 4666777778888777744
No 29
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=93.60 E-value=0.67 Score=27.86 Aligned_cols=45 Identities=11% Similarity=0.053 Sum_probs=33.0
Q ss_pred eeecCCCEEEecCCccC-eEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 50 VPYTERSILVHEGSGVE-KMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 50 ~~~~~ge~I~~~G~~~~-~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
..+++|+..-..-.... .+++|++|.+.+. .++.. ..+++||.+=
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~-~~~~~-----~~l~~Gd~~~ 48 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLT-VDGER-----VELKPGDAIY 48 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEE-ETTEE-----EEEETTEEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEE-EccEE-----eEccCCEEEE
Confidence 46788887655555555 8999999999999 45531 4678998764
No 30
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=90.26 E-value=3 Score=28.84 Aligned_cols=67 Identities=7% Similarity=-0.023 Sum_probs=42.5
Q ss_pred eeecCCCEEEecCCccCeEEEEEeeEEEEe-eecCCceeeeeeeeCCCCeeecccccCccccccCCCCcceeEEEeccee
Q 038042 50 VPYTERSILVHEGSGVEKMFFIVRGKIWSE-PTTIRTTTFSFNASNDGHFCGEELLPRASVLQLGGLPISTRTVIAHTPV 128 (162)
Q Consensus 50 ~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~-~~~~~~~~~~~~~~~~G~~~Ge~~l~~~~~~~~~~~~~~~~tv~a~~~~ 128 (162)
..+++|+..-.--.....+++|++|++.+. ..+++. ..+.+||.+--. . ..+..+.+.+++
T Consensus 40 ~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i~~g~~-----~~L~aGD~i~~~---~----------~~~H~~~N~e~~ 101 (125)
T PRK13290 40 TTIYAGTETHLHYKNHLEAVYCIEGEGEVEDLATGEV-----HPIRPGTMYALD---K----------HDRHYLRAGEDM 101 (125)
T ss_pred EEECCCCcccceeCCCEEEEEEEeCEEEEEEcCCCEE-----EEeCCCeEEEEC---C----------CCcEEEEcCCCE
Confidence 577888755332222246899999999998 433532 468899987521 1 223455555888
Q ss_pred EEEEEe
Q 038042 129 EAFVIE 134 (162)
Q Consensus 129 ~l~~i~ 134 (162)
+++++-
T Consensus 102 ~~l~v~ 107 (125)
T PRK13290 102 RLVCVF 107 (125)
T ss_pred EEEEEE
Confidence 887763
No 31
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=88.91 E-value=0.73 Score=28.72 Aligned_cols=41 Identities=12% Similarity=0.106 Sum_probs=28.5
Q ss_pred cCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 53 TERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 53 ~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
.+|..-..-.. +.+.+|++|.+.+...+|.. ..+++||.+-
T Consensus 15 ~pg~~~~~~~~--~E~~~vleG~v~it~~~G~~-----~~~~aGD~~~ 55 (74)
T PF05899_consen 15 TPGKFPWPYPE--DEFFYVLEGEVTITDEDGET-----VTFKAGDAFF 55 (74)
T ss_dssp ECEEEEEEESS--EEEEEEEEEEEEEEETTTEE-----EEEETTEEEE
T ss_pred CCceeEeeCCC--CEEEEEEEeEEEEEECCCCE-----EEEcCCcEEE
Confidence 44544333322 77789999999999877732 4678999874
No 32
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=81.50 E-value=5.6 Score=27.20 Aligned_cols=48 Identities=10% Similarity=0.113 Sum_probs=38.2
Q ss_pred eeeeecCCCEEEecCCc-cCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeeec
Q 038042 48 KLVPYTERSILVHEGSG-VEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCGE 101 (162)
Q Consensus 48 ~~~~~~~ge~I~~~G~~-~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~Ge 101 (162)
....+.+|+.+-.--.+ .....+|++|.+++... +.. ..+.+||++-.
T Consensus 46 ~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~-g~~-----~~l~~Gd~i~i 94 (131)
T COG1917 46 VLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE-GEK-----KELKAGDVIII 94 (131)
T ss_pred EEEEECCCcccccccCCCcceEEEEEecEEEEEec-CCc-----eEecCCCEEEE
Confidence 35789999998777776 67899999999999986 532 35789999874
No 33
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=80.11 E-value=8.7 Score=26.88 Aligned_cols=54 Identities=11% Similarity=0.064 Sum_probs=35.3
Q ss_pred ceeeeecCCCEEEecCCc-cCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 47 LKLVPYTERSILVHEGSG-VEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 47 ~~~~~~~~ge~I~~~G~~-~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
+....+++|...-..-.. ...+++|++|...+...+..........+.+||++-
T Consensus 32 ~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ 86 (146)
T smart00835 32 AARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFV 86 (146)
T ss_pred EEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEE
Confidence 344678888876544433 578999999999998653211111125789999875
No 34
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=79.36 E-value=13 Score=28.79 Aligned_cols=34 Identities=18% Similarity=0.237 Sum_probs=27.5
Q ss_pred eeeeecCCCEEEecCCccCeEEEEEeeEEEEeee
Q 038042 48 KLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPT 81 (162)
Q Consensus 48 ~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~ 81 (162)
......+|+..-.+-..-+.+.+++.|.+++...
T Consensus 32 ~~~~L~~Ges~~~~~~~~E~clV~v~Gk~~vs~~ 65 (270)
T COG3718 32 RLLRLAAGESATEETGDRERCLVLVTGKATVSAH 65 (270)
T ss_pred EEEEccCCCcccccCCCceEEEEEEeeeEEEeec
Confidence 4467788888877777778889999999999864
No 35
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=78.62 E-value=8.4 Score=26.43 Aligned_cols=47 Identities=6% Similarity=0.024 Sum_probs=33.0
Q ss_pred eeeeecCCCEE-EecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 48 KLVPYTERSIL-VHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 48 ~~~~~~~ge~I-~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
....+++|+-+ ++--...+..|+|++|...+... ++ . ..+++||.+=
T Consensus 39 ~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~-~~--~---~~v~~gd~~~ 86 (127)
T COG0662 39 ARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIG-GE--E---VEVKAGDSVY 86 (127)
T ss_pred EEEEECCCcccCcccccCcceEEEEEeeEEEEEEC-CE--E---EEecCCCEEE
Confidence 44667777764 44444568999999999999984 32 1 3577888763
No 36
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=76.27 E-value=14 Score=29.99 Aligned_cols=73 Identities=10% Similarity=-0.095 Sum_probs=48.8
Q ss_pred eecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeeecccccCccccccCCCCcceeEEEecceeEE
Q 038042 51 PYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCGEELLPRASVLQLGGLPISTRTVIAHTPVEA 130 (162)
Q Consensus 51 ~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~Ge~~l~~~~~~~~~~~~~~~~tv~a~~~~~l 130 (162)
.+++|..--..-+.+..+|.|++|+-.+... ++ . ..+++||+|-..++ ...+..+.+++.+
T Consensus 256 ~L~~G~~t~~~r~T~s~Vf~VieG~G~s~ig-~~--~---~~W~~gD~f~vPsW-------------~~~~h~a~~da~L 316 (335)
T TIGR02272 256 LLPKGFRTATYRSTDATVFCVVEGRGQVRIG-DA--V---FRFSPKDVFVVPSW-------------HPVRFEASDDAVL 316 (335)
T ss_pred ccCCCCCCCCccccccEEEEEEeCeEEEEEC-CE--E---EEecCCCEEEECCC-------------CcEecccCCCeEE
Confidence 3444444444455678999999999888873 32 2 36889999975332 1134455678889
Q ss_pred EEEeHHHHHHHH
Q 038042 131 FVIEADDWKQLV 142 (162)
Q Consensus 131 ~~i~~~~~~~l~ 142 (162)
+.++-..+.+-+
T Consensus 317 f~~~D~Pll~~L 328 (335)
T TIGR02272 317 FSFSDRPVQQKL 328 (335)
T ss_pred EEecCHHHHHHh
Confidence 999888777644
No 37
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=69.12 E-value=27 Score=22.24 Aligned_cols=63 Identities=13% Similarity=0.115 Sum_probs=41.8
Q ss_pred ceeeeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeeecccccCccccccCCCCcceeEEEecc
Q 038042 47 LKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCGEELLPRASVLQLGGLPISTRTVIAHT 126 (162)
Q Consensus 47 ~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~Ge~~l~~~~~~~~~~~~~~~~tv~a~~ 126 (162)
.....+.+|..+-.-........+|++|...- +. ..+.+|+++=.. +-+..+..+.+
T Consensus 26 ~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~d----~~------~~~~~G~~~~~p-------------~g~~h~~~s~~ 82 (91)
T PF12973_consen 26 VSLLRLEPGASLPRHRHPGGEEILVLEGELSD----GD------GRYGAGDWLRLP-------------PGSSHTPRSDE 82 (91)
T ss_dssp EEEEEE-TTEEEEEEEESS-EEEEEEECEEEE----TT------CEEETTEEEEE--------------TTEEEEEEESS
T ss_pred EEEEEECCCCCcCccCCCCcEEEEEEEEEEEE----CC------ccCCCCeEEEeC-------------CCCccccCcCC
Confidence 45578889988877666777778999999762 21 235688887431 13456777888
Q ss_pred eeEEEE
Q 038042 127 PVEAFV 132 (162)
Q Consensus 127 ~~~l~~ 132 (162)
+|.+|.
T Consensus 83 gc~~~v 88 (91)
T PF12973_consen 83 GCLILV 88 (91)
T ss_dssp CEEEEE
T ss_pred CEEEEE
Confidence 998875
No 38
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=65.95 E-value=39 Score=24.28 Aligned_cols=52 Identities=15% Similarity=0.153 Sum_probs=32.1
Q ss_pred ccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeeecccccCccccccCCCCcceeEEEecceeEEEEEe
Q 038042 64 GVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCGEELLPRASVLQLGGLPISTRTVIAHTPVEAFVIE 134 (162)
Q Consensus 64 ~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~Ge~~l~~~~~~~~~~~~~~~~tv~a~~~~~l~~i~ 134 (162)
..+.+.+|++|...+.. +|+. ...++||++= ++ + -+..+..+-..++.+.+.
T Consensus 94 ~YDEi~~VlEG~L~i~~-~G~~-----~~A~~GDvi~---iP--------k--Gs~I~fst~~~a~~~Yv~ 145 (152)
T PF06249_consen 94 TYDEIKYVLEGTLEISI-DGQT-----VTAKPGDVIF---IP--------K--GSTITFSTPDYARFFYVT 145 (152)
T ss_dssp SSEEEEEEEEEEEEEEE-TTEE-----EEEETT-EEE---E---------T--T-EEEEEEEEEEEEEEEE
T ss_pred ecceEEEEEEeEEEEEE-CCEE-----EEEcCCcEEE---EC--------C--CCEEEEecCCCEEEEEEE
Confidence 45789999999998884 5632 3577999873 21 1 234455555666666553
No 39
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=65.89 E-value=33 Score=24.83 Aligned_cols=62 Identities=16% Similarity=0.284 Sum_probs=39.2
Q ss_pred EecCCccCeEEEEEeeEEEEeeecC-CceeeeeeeeCCCCeeecccccCccccccCCCCcceeEEEecceeEEEEEeHHH
Q 038042 59 VHEGSGVEKMFFIVRGKIWSEPTTI-RTTTFSFNASNDGHFCGEELLPRASVLQLGGLPISTRTVIAHTPVEAFVIEADD 137 (162)
Q Consensus 59 ~~~G~~~~~ly~I~~G~v~v~~~~~-~~~~~~~~~~~~G~~~Ge~~l~~~~~~~~~~~~~~~~tv~a~~~~~l~~i~~~~ 137 (162)
++..+ .+.++++++|.+.+-..++ +... -.+++||+|=- +. +. +.+-.+.++|.++.|.+..
T Consensus 43 ~H~~~-tdE~FyqleG~~~l~v~d~g~~~~---v~L~eGd~flv---P~-------gv---pHsP~r~~~t~~LvIE~~r 105 (159)
T TIGR03037 43 FHDDP-GEEFFYQLKGEMYLKVTEEGKRED---VPIREGDIFLL---PP-------HV---PHSPQRPAGSIGLVIERKR 105 (159)
T ss_pred cccCC-CceEEEEEcceEEEEEEcCCcEEE---EEECCCCEEEe---CC-------CC---CcccccCCCcEEEEEEeCC
Confidence 34433 6899999999999977654 2122 36899998842 11 11 2334456777777776643
No 40
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=64.53 E-value=12 Score=27.02 Aligned_cols=55 Identities=18% Similarity=0.192 Sum_probs=36.0
Q ss_pred HHHHhhceeeeecCCCEEEecC---------CccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeeec
Q 038042 41 NAMLDLLKLVPYTERSILVHEG---------SGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCGE 101 (162)
Q Consensus 41 ~~l~~~~~~~~~~~ge~I~~~G---------~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~Ge 101 (162)
.+|-+.+-...|--+-.++++| +..+.+..|++|+..+...++. ..++|||..|=
T Consensus 31 ~~lG~~~Gl~~fGvn~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~d~~e------~~lrpGD~~gF 94 (161)
T COG3837 31 TRLGDALGLKRFGVNLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLREDGGE------TRLRPGDSAGF 94 (161)
T ss_pred hhhhhhcChhhcccceEEeCCCCccccccccccCceEEEEEcCceEEEECCee------EEecCCceeec
Confidence 3444444444444444455554 4567899999999988885442 35789999883
No 41
>PRK11171 hypothetical protein; Provisional
Probab=64.38 E-value=47 Score=25.89 Aligned_cols=46 Identities=24% Similarity=0.289 Sum_probs=30.6
Q ss_pred eeeecCCCEEEecCC--ccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 49 LVPYTERSILVHEGS--GVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 49 ~~~~~~ge~I~~~G~--~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
...+++|.-.-.... ..+.+++|++|.+++.. +++. ..+.+||.+=
T Consensus 65 ~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~-~g~~-----~~L~~GDsi~ 112 (266)
T PRK11171 65 LVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTL-EGKT-----HALSEGGYAY 112 (266)
T ss_pred EEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEE-CCEE-----EEECCCCEEE
Confidence 356677764433322 24688999999999986 4422 4688999764
No 42
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=64.26 E-value=30 Score=28.43 Aligned_cols=52 Identities=6% Similarity=0.004 Sum_probs=33.8
Q ss_pred eeeeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 48 KLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 48 ~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
....+.+|...-.--....++.++++|++++...+.....+. ..+++||++=
T Consensus 70 ~~~~l~pG~~~~~HwH~~~E~~yVl~G~~~v~~~d~~g~~~~-~~L~~GD~~~ 121 (367)
T TIGR03404 70 VNMRLEPGAIRELHWHKEAEWAYVLYGSCRITAVDENGRNYI-DDVGAGDLWY 121 (367)
T ss_pred eEEEEcCCCCCCcccCCCceEEEEEeeEEEEEEEcCCCcEEE-eEECCCCEEE
Confidence 345677777653222345679999999999998643112221 3689999874
No 43
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=62.72 E-value=21 Score=26.38 Aligned_cols=58 Identities=14% Similarity=0.214 Sum_probs=37.2
Q ss_pred ccCeEEEEEeeEEEEeeecC-CceeeeeeeeCCCCeeecccccCccccccCCCCcceeEEEecceeEEEEEeHHH
Q 038042 64 GVEKMFFIVRGKIWSEPTTI-RTTTFSFNASNDGHFCGEELLPRASVLQLGGLPISTRTVIAHTPVEAFVIEADD 137 (162)
Q Consensus 64 ~~~~ly~I~~G~v~v~~~~~-~~~~~~~~~~~~G~~~Ge~~l~~~~~~~~~~~~~~~~tv~a~~~~~l~~i~~~~ 137 (162)
..+.++++++|.+.+...|+ +... -.+++||+|=- +. +. +.+-.+.++|..+.+.+..
T Consensus 53 ~tdE~FyqleG~~~l~v~d~g~~~~---v~L~eGd~fll---P~-------gv---pHsP~r~~~tv~LviE~~r 111 (177)
T PRK13264 53 PGEEFFYQLEGDMYLKVQEDGKRRD---VPIREGEMFLL---PP-------HV---PHSPQREAGSIGLVIERKR 111 (177)
T ss_pred CCceEEEEECCeEEEEEEcCCceee---EEECCCCEEEe---CC-------CC---CcCCccCCCeEEEEEEeCC
Confidence 46889999999999987654 2122 36889998742 11 11 1233445777777776544
No 44
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=62.68 E-value=67 Score=24.70 Aligned_cols=38 Identities=26% Similarity=0.424 Sum_probs=28.0
Q ss_pred CEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCee
Q 038042 56 SILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFC 99 (162)
Q Consensus 56 e~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~ 99 (162)
..--+.++.++.+.||++|.+.+.. +|++ ..+.+|++.
T Consensus 74 s~~~e~d~~ae~~lfVv~Ge~tv~~-~G~t-----h~l~eggya 111 (264)
T COG3257 74 SQRPEGDEGAETFLFVVSGEITVKA-EGKT-----HALREGGYA 111 (264)
T ss_pred CCCCCCCCcceEEEEEEeeeEEEEE-cCeE-----EEeccCCeE
Confidence 4445566788999999999999987 3533 457788764
No 45
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=61.82 E-value=29 Score=24.14 Aligned_cols=50 Identities=8% Similarity=0.082 Sum_probs=33.7
Q ss_pred eeecCCCEEEecCCccCeEEEEEeeEEEEeeecC-C----ceeeeee--eeCCCCeee
Q 038042 50 VPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTI-R----TTTFSFN--ASNDGHFCG 100 (162)
Q Consensus 50 ~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~-~----~~~~~~~--~~~~G~~~G 100 (162)
....+|.+...-=..+..+.+|++|+..+...+. . .... .. .+++||+|-
T Consensus 39 ~~i~pg~~~~Ph~h~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~-~~~v~l~~Gdv~~ 95 (144)
T PF00190_consen 39 VLIEPGGLRAPHYHNADEIVYVIEGRGRVGVVGPGGPQEEFRDF-SQKVRLKAGDVFV 95 (144)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEESEEEEEEEETTCSSSEEEEE-EEEEEEETTEEEE
T ss_pred eehhcCCccceeEeeeeEEeeeeccceEEEEEecCCccccceee-eceeeeeccccee
Confidence 4457887775554578999999999999765422 1 1111 12 389999986
No 46
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=61.75 E-value=38 Score=27.86 Aligned_cols=50 Identities=10% Similarity=0.098 Sum_probs=33.4
Q ss_pred eeeeecCCCEEE-ecCCccCeEEEEEeeEEEEeeecC--CceeeeeeeeCCCCeee
Q 038042 48 KLVPYTERSILV-HEGSGVEKMFFIVRGKIWSEPTTI--RTTTFSFNASNDGHFCG 100 (162)
Q Consensus 48 ~~~~~~~ge~I~-~~G~~~~~ly~I~~G~v~v~~~~~--~~~~~~~~~~~~G~~~G 100 (162)
....+++|...- +--...+++++|++|++++...|+ +... ..+++||++=
T Consensus 248 ~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~~~---~~l~~GD~~~ 300 (367)
T TIGR03404 248 AIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAGGNART---FDYQAGDVGY 300 (367)
T ss_pred EEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEecCCcEEE---EEECCCCEEE
Confidence 456677777663 222346789999999999986543 2222 4689999763
No 47
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=61.32 E-value=26 Score=26.47 Aligned_cols=69 Identities=6% Similarity=0.013 Sum_probs=46.7
Q ss_pred hceeeeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeeecccccCccccccCCCCcceeEEEec
Q 038042 46 LLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCGEELLPRASVLQLGGLPISTRTVIAH 125 (162)
Q Consensus 46 ~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~Ge~~l~~~~~~~~~~~~~~~~tv~a~ 125 (162)
.....++++|..+-.-......+.+|++|... |+. ..+.+|||.=.. . -...+..|.
T Consensus 128 ~v~Ll~i~pG~~~p~H~H~G~E~tlVLeG~f~----de~------g~y~~Gd~i~~p---~----------~~~H~p~a~ 184 (215)
T TIGR02451 128 RVRLLYIEAGQSIPQHTHKGFELTLVLHGAFS----DET------GVYGVGDFEEAD---G----------SVQHQPRTV 184 (215)
T ss_pred EEEEEEECCCCccCCCcCCCcEEEEEEEEEEE----cCC------CccCCCeEEECC---C----------CCCcCcccC
Confidence 34568889999998888888888899999953 331 246789987421 1 223445555
Q ss_pred --ceeEEEEEeHHH
Q 038042 126 --TPVEAFVIEADD 137 (162)
Q Consensus 126 --~~~~l~~i~~~~ 137 (162)
++|.++.+.-..
T Consensus 185 ~~~~Cicl~v~dap 198 (215)
T TIGR02451 185 SGGDCLCLAVLDAP 198 (215)
T ss_pred CCCCeEEEEEecCC
Confidence 558888875543
No 48
>PRK11171 hypothetical protein; Provisional
Probab=60.96 E-value=33 Score=26.80 Aligned_cols=49 Identities=14% Similarity=0.162 Sum_probs=37.0
Q ss_pred hceeeeecCCCEEEe-cCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 46 LLKLVPYTERSILVH-EGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 46 ~~~~~~~~~ge~I~~-~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
.+....+++|..+-. .....++.++|++|+..+.. +++. ..+.+||++-
T Consensus 185 ~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~-~~~~-----~~l~~GD~i~ 234 (266)
T PRK11171 185 HVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRL-NNDW-----VEVEAGDFIW 234 (266)
T ss_pred EEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEE-CCEE-----EEeCCCCEEE
Confidence 344578899988866 46778899999999999976 4422 4578999874
No 49
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=60.10 E-value=37 Score=26.42 Aligned_cols=45 Identities=18% Similarity=0.315 Sum_probs=28.6
Q ss_pred eeecCCCEEEec--CCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 50 VPYTERSILVHE--GSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 50 ~~~~~ge~I~~~--G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
..+++|.-.-.. .+..+.+.+|++|++++.. ++.. ..+.+||++=
T Consensus 63 v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~~-~g~~-----~~L~~Gd~~y 109 (260)
T TIGR03214 63 VEVHPGGGNTTGFGGEGIETFLFVISGEVNVTA-EGET-----HELREGGYAY 109 (260)
T ss_pred EEECCCCcCCCCCCCCceEEEEEEEeCEEEEEE-CCEE-----EEECCCCEEE
Confidence 555665432111 1223689999999999986 4422 4688999874
No 50
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=55.21 E-value=48 Score=24.07 Aligned_cols=31 Identities=13% Similarity=0.013 Sum_probs=23.0
Q ss_pred ccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 64 GVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 64 ~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
....+++|++|.+.+.. +++. ..+.+||.+=
T Consensus 127 ~~~E~~~Vl~G~~~~~~-~~~~-----~~l~~Gd~~~ 157 (185)
T PRK09943 127 QGEEIGTVLEGEIVLTI-NGQD-----YHLVAGQSYA 157 (185)
T ss_pred CCcEEEEEEEeEEEEEE-CCEE-----EEecCCCEEE
Confidence 44688999999999876 4421 4688999764
No 51
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=54.72 E-value=87 Score=23.31 Aligned_cols=50 Identities=8% Similarity=0.048 Sum_probs=30.6
Q ss_pred eeecCCCEE---------EecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 50 VPYTERSIL---------VHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 50 ~~~~~ge~I---------~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
..+.+|... +++......+|++++|...+...+... ......+.||+++=
T Consensus 73 t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G-~~~~~~v~pGd~v~ 131 (191)
T PRK04190 73 TRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEG-EARWIEMEPGTVVY 131 (191)
T ss_pred EEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCC-cEEEEEECCCCEEE
Confidence 455666642 333333458999999999988653211 11124688999864
No 52
>PF14633 SH2_2: SH2 domain; PDB: 3GXX_A 3GXW_B 3PJP_B 2XP1_A.
Probab=52.25 E-value=37 Score=25.94 Aligned_cols=42 Identities=10% Similarity=0.204 Sum_probs=30.4
Q ss_pred HhhhhhCccccccCHHHHHHHHhhceeeeecCCCEEEecCCcc-CeEE
Q 038042 23 LHSLVLHQVFDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGV-EKMF 69 (162)
Q Consensus 23 ~~~L~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~-~~ly 69 (162)
..-.-.+|.|.+++-.+.+..+.... .||+|+++...+ +++-
T Consensus 32 ~~R~I~HP~F~n~~~~qAe~~L~~~~-----~Ge~iIRPSSkG~dhL~ 74 (220)
T PF14633_consen 32 VKRVIKHPLFKNFNYKQAEEYLADQD-----VGEVIIRPSSKGPDHLT 74 (220)
T ss_dssp -HHHHCSTTEESS-HHHHHHHHCCS------TT-EEEEE-TTTTTEEE
T ss_pred ccccccCCCccCCCHHHHHHHHhcCC-----CCCEEEeeCCCCCCeEE
Confidence 34566889999999999998887763 699999999986 4553
No 53
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=50.98 E-value=42 Score=26.11 Aligned_cols=49 Identities=10% Similarity=0.098 Sum_probs=36.2
Q ss_pred hhceeeeecCCCEEE-ecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCee
Q 038042 45 DLLKLVPYTERSILV-HEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFC 99 (162)
Q Consensus 45 ~~~~~~~~~~ge~I~-~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~ 99 (162)
..+...++++|..+- .+-...++.++|++|+..... ||+. ..+.+||++
T Consensus 179 ~~~~~~~~~PG~~~~~~~~H~~eh~~yiL~G~G~~~~-~g~~-----~~V~~GD~i 228 (260)
T TIGR03214 179 MNVHILSFEPGASHPYIETHVMEHGLYVLEGKGVYNL-DNNW-----VPVEAGDYI 228 (260)
T ss_pred cEEEEEEECCCcccCCcccccceeEEEEEeceEEEEE-CCEE-----EEecCCCEE
Confidence 345568899999884 566677899999999977754 5532 357799986
No 54
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=48.21 E-value=81 Score=21.56 Aligned_cols=43 Identities=14% Similarity=0.138 Sum_probs=29.2
Q ss_pred eeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCee
Q 038042 50 VPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFC 99 (162)
Q Consensus 50 ~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~ 99 (162)
-...+|+.=..-++ ..+.-|++|.+++...+|.. -.+++||.|
T Consensus 50 We~TpG~~r~~y~~--~E~chil~G~v~~T~d~Ge~-----v~~~aGD~~ 92 (116)
T COG3450 50 WECTPGKFRVTYDE--DEFCHILEGRVEVTPDGGEP-----VEVRAGDSF 92 (116)
T ss_pred EEecCccceEEccc--ceEEEEEeeEEEEECCCCeE-----EEEcCCCEE
Confidence 34455665555555 56677899999999866632 357899876
No 55
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=47.44 E-value=37 Score=26.17 Aligned_cols=29 Identities=10% Similarity=0.219 Sum_probs=21.9
Q ss_pred cCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCee
Q 038042 65 VEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFC 99 (162)
Q Consensus 65 ~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~ 99 (162)
.+.+.+|++|.+++.. +|++ ..++|||++
T Consensus 175 ~dEi~YVLEGe~~l~I-dG~t-----~~l~pGDvl 203 (233)
T PRK15457 175 YDEIDMVLEGELHVRH-EGET-----MIAKAGDVM 203 (233)
T ss_pred ceEEEEEEEeEEEEEE-CCEE-----EEeCCCcEE
Confidence 3578899999999988 4532 467899876
No 56
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=47.24 E-value=31 Score=28.05 Aligned_cols=48 Identities=17% Similarity=0.078 Sum_probs=33.8
Q ss_pred eeeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeeec
Q 038042 49 LVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCGE 101 (162)
Q Consensus 49 ~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~Ge 101 (162)
.+.+++|+.--.--.....+++|++|.-.-...+|+. ..+++||+|-.
T Consensus 85 ~q~l~pGe~~~~HRht~sAl~~vveG~G~~t~V~g~~-----~~~~~gD~~~t 132 (335)
T TIGR02272 85 LQLILPGEVAPSHRHTQSALRFIVEGKGAFTAVDGER-----TTMHPGDFIIT 132 (335)
T ss_pred hEEeCCCCCCCccccccceEEEEEEcCceEEEECCEE-----EeeeCCCEEEe
Confidence 3667777777666667788999999986444456632 35778888864
No 57
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=45.30 E-value=1.2e+02 Score=25.70 Aligned_cols=45 Identities=9% Similarity=-0.028 Sum_probs=27.7
Q ss_pred eeecCCCEEE-ecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 50 VPYTERSILV-HEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 50 ~~~~~ge~I~-~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
..+++|..+- +........++|++|.+++.. +|++ ..+++||.+-
T Consensus 381 ~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~-dg~~-----~~l~~GDsi~ 426 (468)
T TIGR01479 381 ITVKPGEKLSLQMHHHRAEHWIVVSGTARVTI-GDET-----LLLTENESTY 426 (468)
T ss_pred EEECCCCccCccccCCCceEEEEEeeEEEEEE-CCEE-----EEecCCCEEE
Confidence 4556665431 112223456789999999987 4422 3678999774
No 58
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=43.99 E-value=90 Score=22.26 Aligned_cols=45 Identities=9% Similarity=0.014 Sum_probs=29.6
Q ss_pred eeeecCCCEE-EecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCee
Q 038042 49 LVPYTERSIL-VHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFC 99 (162)
Q Consensus 49 ~~~~~~ge~I-~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~ 99 (162)
..+..||+.+ ++....-...+.|++|.+.+... ++. ..+.+|+.+
T Consensus 67 ri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~~-~~~-----~~~~~g~sv 112 (151)
T PF01050_consen 67 RITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTLD-DEE-----FTLKEGDSV 112 (151)
T ss_pred EEEEcCCCccceeeecccccEEEEEeCeEEEEEC-CEE-----EEEcCCCEE
Confidence 3556666666 33344456679999999999973 322 356778765
No 59
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=43.71 E-value=49 Score=23.89 Aligned_cols=29 Identities=10% Similarity=0.260 Sum_probs=21.4
Q ss_pred cCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCee
Q 038042 65 VEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFC 99 (162)
Q Consensus 65 ~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~ 99 (162)
-+.+-+|++|+..+...++ + -..+|||++
T Consensus 118 yDe~d~VlEGrL~V~~~g~-t-----v~a~aGDvi 146 (176)
T COG4766 118 YDEIDYVLEGRLHVRIDGR-T-----VIAGAGDVI 146 (176)
T ss_pred ccceeEEEeeeEEEEEcCC-e-----EecCCCcEE
Confidence 4667789999999998543 2 246799876
No 60
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=43.33 E-value=47 Score=21.72 Aligned_cols=32 Identities=6% Similarity=0.053 Sum_probs=19.5
Q ss_pred CccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 63 SGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 63 ~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
...=.+.++.+|...+.. +++. ..++||+++=
T Consensus 21 h~~~~i~~v~~G~~~~~~-~~~~-----~~l~~g~~~l 52 (136)
T PF02311_consen 21 HDFYEIIYVLSGEGTLHI-DGQE-----YPLKPGDLFL 52 (136)
T ss_dssp T-SEEEEEEEEE-EEEEE-TTEE-----EEE-TT-EEE
T ss_pred CCCEEEEEEeCCEEEEEE-CCEE-----EEEECCEEEE
Confidence 335578899999998855 4432 4578998873
No 61
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=41.49 E-value=21 Score=26.47 Aligned_cols=31 Identities=19% Similarity=0.214 Sum_probs=23.8
Q ss_pred CHHHHHHHHhhceeee--ecCCCEEEecCCccC
Q 038042 36 DEHFLNAMLDLLKLVP--YTERSILVHEGSGVE 66 (162)
Q Consensus 36 ~~~~l~~l~~~~~~~~--~~~ge~I~~~G~~~~ 66 (162)
++...+..++...+.. +.+|+.|+++|+...
T Consensus 175 T~~~~~~a~~~V~pv~~~V~~Ge~IV~kGe~VT 207 (222)
T PF07697_consen 175 TEKAREEALASVSPVRGMVKKGEVIVRKGEIVT 207 (222)
T ss_pred HHHHHHHHHhcCCchHhhccCCCEEecCCcEeC
Confidence 4556666677777766 999999999999653
No 62
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=39.39 E-value=1.7e+02 Score=25.09 Aligned_cols=30 Identities=7% Similarity=-0.060 Sum_probs=22.0
Q ss_pred cCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 65 VEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 65 ~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
....++|++|.+.+... ++. ..+.+||.+=
T Consensus 406 ~~E~~~VlsG~~~v~id-g~~-----~~L~~GDSi~ 435 (478)
T PRK15460 406 RAEHWVVVAGTAKVTID-GDI-----KLLGENESIY 435 (478)
T ss_pred CceEEEEEeeEEEEEEC-CEE-----EEecCCCEEE
Confidence 45778899999999884 422 4678998763
No 63
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=38.61 E-value=76 Score=21.98 Aligned_cols=69 Identities=13% Similarity=0.032 Sum_probs=38.4
Q ss_pred ccccccCHHHHHHHHhhceeeeecCCCEE-EecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeeec
Q 038042 30 QVFDRIDEHFLNAMLDLLKLVPYTERSIL-VHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCGE 101 (162)
Q Consensus 30 ~lF~~l~~~~l~~l~~~~~~~~~~~ge~I-~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~Ge 101 (162)
..|.+++.+..-.=--.+...+.++|.-- -.--+.-+....+++|++.....+--+ . -...+|||+|=-
T Consensus 31 tyaagIa~etvGas~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G~rLE--~-ha~~~pGDf~Yi 100 (142)
T COG4101 31 TYAAGIATETVGASGICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYGNRLE--E-HAEVGPGDFFYI 100 (142)
T ss_pred hhhhhhhhhhcccceeeEEEEeeCCCccccccccccccEEEEEEeceeeeeecccee--e-eEEecCCCeEEc
Confidence 33444444333333333455666666432 111233467788999999998854311 1 146789999854
No 64
>PHA00672 hypothetical protein
Probab=37.56 E-value=57 Score=22.80 Aligned_cols=33 Identities=12% Similarity=0.013 Sum_probs=28.0
Q ss_pred eeeeecCCCEEEecCCccCeEEEEEeeEEEEeee
Q 038042 48 KLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPT 81 (162)
Q Consensus 48 ~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~ 81 (162)
.....++|..+.-.=..-+++ +|.+|.+.++..
T Consensus 50 Rei~IPkGt~LtG~~hkf~~~-ii~sG~itV~td 82 (152)
T PHA00672 50 RTIRIPAGVALTGALIKVSTV-LIFSGHATVFIG 82 (152)
T ss_pred EEEeccCceeeeeeeeEeeEE-EEecccEEEEeC
Confidence 457789999888777788888 999999999984
No 65
>PLN02559 chalcone--flavonone isomerase
Probab=36.83 E-value=37 Score=26.12 Aligned_cols=44 Identities=7% Similarity=0.070 Sum_probs=36.3
Q ss_pred chHhhhhhCccccccCHHHHHHHHhhceeeeecCCCEEEecCCc
Q 038042 21 TPLHSLVLHQVFDRIDEHFLNAMLDLLKLVPYTERSILVHEGSG 64 (162)
Q Consensus 21 ~~~~~L~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~ 64 (162)
.+..+++....+.+-+.+.++.+.+.++.+.|++|..|.---.+
T Consensus 112 ~~~a~~ks~g~y~daE~~aLekF~~~Fk~~~fp~Gs~I~ft~sp 155 (230)
T PLN02559 112 NCVAIWKSLGIYTDAEAKAVEKFKEAFKEETFPPGSSILFTHSP 155 (230)
T ss_pred HHHHHHHhcCCcchhHHHHHHHHHHHhcCCCCCCCCEEEEEECC
Confidence 46678888888888888999999999999999999988543333
No 66
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=36.45 E-value=79 Score=22.81 Aligned_cols=49 Identities=12% Similarity=0.081 Sum_probs=26.8
Q ss_pred eeeecCCCEEEecCCccCeEEEEEeeEEEEeee------cCCceeeeeeeeCCCCeee
Q 038042 49 LVPYTERSILVHEGSGVEKMFFIVRGKIWSEPT------TIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 49 ~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~------~~~~~~~~~~~~~~G~~~G 100 (162)
.+++.+|.----.-..|+.+++|++|.-..+.. .|+.+.+ .+++++.|-
T Consensus 48 lQTfAPG~~TPiHRHsCEEVFvVLkG~GTl~l~~~~~~~pG~pqef---~~~pnSTf~ 102 (167)
T PF02041_consen 48 LQTFAPGSATPIHRHSCEEVFVVLKGSGTLYLASSHEKYPGKPQEF---PIFPNSTFH 102 (167)
T ss_dssp EEEE-TT-B--EEEESS-EEEEEEE--EEEEE--SSSSS--S-EEE---EE-TTEEEE
T ss_pred eeeecCCCCCCCccccccEEEEEEecceEEEEecccccCCCCceEE---EecCCCeEE
Confidence 388888887765666799999999999888743 1332222 466777775
No 67
>KOG2378 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=36.31 E-value=39 Score=28.82 Aligned_cols=44 Identities=11% Similarity=0.268 Sum_probs=33.7
Q ss_pred CCCeeecccccCccccccCCCCcceeEEE-ecceeEEEEEeHHHHHHHHhhCC
Q 038042 95 DGHFCGEELLPRASVLQLGGLPISTRTVI-AHTPVEAFVIEADDWKQLVNSFM 146 (162)
Q Consensus 95 ~G~~~Ge~~l~~~~~~~~~~~~~~~~tv~-a~~~~~l~~i~~~~~~~l~~~~p 146 (162)
+||=||..++.... |+.+++. --.+|..+.+++.+|+.++.+-.
T Consensus 1 eGddfgklalvnd~--------praativl~ed~~~fl~vDk~~Fn~I~~~vE 45 (573)
T KOG2378|consen 1 EGDDFGKLALVNDA--------PRAATIVLREDNCHFLRVDKHDFNRILHDVE 45 (573)
T ss_pred CCcccchhcccccc--------ccccceeeecCCCcceeecHHHHHHHHHhhh
Confidence 47889988887542 5656654 44689999999999999988743
No 68
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=35.55 E-value=58 Score=20.89 Aligned_cols=29 Identities=14% Similarity=0.279 Sum_probs=20.0
Q ss_pred CeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 66 EKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 66 ~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
.-.++|++|.|++...+. . ..+.+|++|=
T Consensus 34 ~~vF~V~~G~v~Vti~~~---~---f~v~~G~~F~ 62 (85)
T PF11699_consen 34 TMVFYVIKGKVEVTIHET---S---FVVTKGGSFQ 62 (85)
T ss_dssp EEEEEEEESEEEEEETTE---E---EEEETT-EEE
T ss_pred EEEEEEEeCEEEEEEcCc---E---EEEeCCCEEE
Confidence 356889999999988432 1 3467888874
No 69
>PLN00212 glutelin; Provisional
Probab=30.44 E-value=1.2e+02 Score=26.22 Aligned_cols=53 Identities=11% Similarity=0.109 Sum_probs=34.9
Q ss_pred eeeeecCCCEEEe-cCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 48 KLVPYTERSILVH-EGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 48 ~~~~~~~ge~I~~-~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
....+.+|.++.. =.-.+..+.++++|.+++-..+.....+....+.+|++|=
T Consensus 351 ~rv~L~~gam~~PHwn~nA~eI~yV~rG~g~vqvV~~~g~~vf~~~L~~GdvfV 404 (493)
T PLN00212 351 TRVNLYQNALLSPFWNVNAHSVVYITQGRARVQVVSNNGKTVFNGVLRPGQLLI 404 (493)
T ss_pred EEEEEcCCcccCCeecCCCCEEEEEeecceEEEEEcCCCCEEEEEEEcCCCEEE
Confidence 4456666666532 2234889999999999888664321222236899999985
No 70
>smart00252 SH2 Src homology 2 domains. Src homology 2 domains bind phosphotyrosine-containing polypeptides via 2 surface pockets. Specificity is provided via interaction with residues that are distinct from the phosphotyrosine. Only a single occurrence of a SH2 domain has been found in S. cerevisiae.
Probab=30.10 E-value=1.1e+02 Score=18.64 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=20.5
Q ss_pred ccCHHHHHHHHhhceeeeecCCCEEEecCCc
Q 038042 34 RIDEHFLNAMLDLLKLVPYTERSILVHEGSG 64 (162)
Q Consensus 34 ~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~ 64 (162)
.++.++.+.++... +.|+++++..+.
T Consensus 7 ~i~r~~Ae~lL~~~-----~~G~FLvR~s~~ 32 (84)
T smart00252 7 FISREEAEKLLKNE-----GDGDFLVRDSES 32 (84)
T ss_pred cCCHHHHHHHHhcC-----CCcEEEEEcCCC
Confidence 56778888777662 389999999986
No 71
>cd00173 SH2 Src homology 2 domains; Signal transduction, involved in recognition of phosphorylated tyrosine (pTyr). SH2 domains typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.
Probab=29.94 E-value=1e+02 Score=19.09 Aligned_cols=30 Identities=13% Similarity=0.200 Sum_probs=22.9
Q ss_pred ccccCHHHHHHHHhhceeeeecCCCEEEecCCccC
Q 038042 32 FDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVE 66 (162)
Q Consensus 32 F~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~ 66 (162)
+..++.++.+.++.. -+.|+++++..+...
T Consensus 4 ~g~i~r~~Ae~~L~~-----~~~G~FLiR~s~~~~ 33 (94)
T cd00173 4 HGPISREEAEELLKK-----KPDGTFLVRDSESSP 33 (94)
T ss_pred ccCCCHHHHHHHHhc-----CCCceEEEEecCCCC
Confidence 346778888887766 689999999998433
No 72
>PLN02804 chalcone isomerase
Probab=27.19 E-value=72 Score=24.14 Aligned_cols=41 Identities=12% Similarity=0.259 Sum_probs=33.8
Q ss_pred chHhhhhhCccccccCHHHHHHHHhhceeeeecCCCEEEec
Q 038042 21 TPLHSLVLHQVFDRIDEHFLNAMLDLLKLVPYTERSILVHE 61 (162)
Q Consensus 21 ~~~~~L~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~ 61 (162)
.+.+.|++...+.+-..+.++.+.+.++.+.++||..|.-.
T Consensus 106 ~~~~rlk~~~~y~d~e~~aL~kf~~~Fk~~~fp~Gs~I~ft 146 (206)
T PLN02804 106 SVRDRLAEDDKYEEEEEEALEKVVEFFQSKYFKKNSIITYH 146 (206)
T ss_pred HHHHHHhcCCCCcchHHHHHHHHHHHhCCCcCCCCCEEEEE
Confidence 45667777777777778999999999999999999988543
No 73
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=27.01 E-value=2.6e+02 Score=22.75 Aligned_cols=62 Identities=6% Similarity=-0.003 Sum_probs=42.9
Q ss_pred CccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeeecccccCccccccCCCCcceeEEEe-cceeEEEEEeHHHHHHH
Q 038042 63 SGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCGEELLPRASVLQLGGLPISTRTVIA-HTPVEAFVIEADDWKQL 141 (162)
Q Consensus 63 ~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~Ge~~l~~~~~~~~~~~~~~~~tv~a-~~~~~l~~i~~~~~~~l 141 (162)
+....+|-|.+|+-.+.. +|. . ....+||+|-...+- -....+ .+++.+++++-..+.+.
T Consensus 279 ~t~s~iy~V~eGsg~~~I-g~~--r---f~~~~~D~fvVPsW~-------------~~~~~~gs~da~LFsfsD~PV~ea 339 (351)
T COG3435 279 HTDSTIYHVVEGSGYTII-GGE--R---FDWSAGDIFVVPSWA-------------WHEHVNGSEDAVLFSFSDRPVMEA 339 (351)
T ss_pred ccCCEEEEEEecceeEEE-CCE--E---eeccCCCEEEccCcc-------------eeecccCCcceEEEecCCcHHHHH
Confidence 456789999999987776 342 2 357899999653321 122333 78999999998887776
Q ss_pred Hh
Q 038042 142 VN 143 (162)
Q Consensus 142 ~~ 143 (162)
+.
T Consensus 340 Lg 341 (351)
T COG3435 340 LG 341 (351)
T ss_pred hh
Confidence 54
No 74
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=26.00 E-value=1.5e+02 Score=21.23 Aligned_cols=60 Identities=15% Similarity=0.204 Sum_probs=30.8
Q ss_pred ccCeEEEEEeeEEEEeeec-CCceeeeeeeeCCCCeeecccccCccccccCCCCcceeEEEecceeEEEEEeHHHHH
Q 038042 64 GVEKMFFIVRGKIWSEPTT-IRTTTFSFNASNDGHFCGEELLPRASVLQLGGLPISTRTVIAHTPVEAFVIEADDWK 139 (162)
Q Consensus 64 ~~~~ly~I~~G~v~v~~~~-~~~~~~~~~~~~~G~~~Ge~~l~~~~~~~~~~~~~~~~tv~a~~~~~l~~i~~~~~~ 139 (162)
..+.++.-++|...+-..+ |+... -.+++|++|=-. + +.| .+-+--.++.-+.+.+..-.
T Consensus 52 e~eE~FyQ~kG~m~Lkv~e~g~~kd---i~I~EGe~fLLP----~------~vp---HsP~R~~~tiGLViEr~R~~ 112 (151)
T PF06052_consen 52 ETEEFFYQLKGDMCLKVVEDGKFKD---IPIREGEMFLLP----A------NVP---HSPQRPADTIGLVIERKRPE 112 (151)
T ss_dssp SS-EEEEEEES-EEEEEEETTEEEE---EEE-TTEEEEE-----T------T-----EEEEE-TT-EEEEEEE---T
T ss_pred CcceEEEEEeCcEEEEEEeCCceEE---EEeCCCcEEecC----C------CCC---CCCcCCCCcEEEEEEeccCC
Confidence 3457889999988887654 43333 368999988421 1 222 22222357888888776443
No 75
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.30 E-value=1.2e+02 Score=24.66 Aligned_cols=48 Identities=13% Similarity=0.042 Sum_probs=30.5
Q ss_pred eeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeeecc
Q 038042 50 VPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCGEE 102 (162)
Q Consensus 50 ~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~Ge~ 102 (162)
+...+||+--.--.....+.||++|.-.-...||.. ..+.+||++=..
T Consensus 97 QlilPGEvApsHrHsqsAlRFvveG~Ga~T~VdGer-----~~M~~GDfilTP 144 (351)
T COG3435 97 QLILPGEVAPSHRHNQSALRFVVEGKGAYTVVDGER-----TPMEAGDFILTP 144 (351)
T ss_pred heecCcccCCcccccccceEEEEeccceeEeecCce-----eeccCCCEEEcc
Confidence 334444443333344567999999997777778721 357889987643
No 76
>PF12852 Cupin_6: Cupin
Probab=24.73 E-value=1.8e+02 Score=20.82 Aligned_cols=35 Identities=17% Similarity=0.265 Sum_probs=23.6
Q ss_pred cCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCee
Q 038042 61 EGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFC 99 (162)
Q Consensus 61 ~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~ 99 (162)
++...-.+++|.+|...+...++.. . ..+.+||++
T Consensus 31 ~~~~~~~fh~V~~G~~~l~~~~~~~-~---~~L~~GDiv 65 (186)
T PF12852_consen 31 PGSPGASFHVVLRGSCWLRVPGGGE-P---IRLEAGDIV 65 (186)
T ss_pred cCCCceEEEEEECCeEEEEEcCCCC-e---EEecCCCEE
Confidence 3333688999999999998644221 1 356778776
No 77
>PF10330 Stb3: Putative Sin3 binding protein; InterPro: IPR018818 This entry represents Sin3 binding proteins conserved in fungi. Sin3p does not bind DNA directly even though the yeast SIN3 gene functions as a transcriptional repressor. Sin3p is part of a large multiprotein complex []. Stb3 appears to bind directly to ribosomal RNA Processing Elements (RRPE) although there are no obvious domains which would accord with this, implying that Stb3 may be a novel RNA-binding protein [].
Probab=24.30 E-value=1e+02 Score=20.12 Aligned_cols=27 Identities=4% Similarity=-0.215 Sum_probs=20.5
Q ss_pred HhhhhhCccccccCHHHHHHHHhhcee
Q 038042 23 LHSLVLHQVFDRIDEHFLNAMLDLLKL 49 (162)
Q Consensus 23 ~~~L~~~~lF~~l~~~~l~~l~~~~~~ 49 (162)
-.+-.++|-|+.+++.-...|+-.+-.
T Consensus 28 ~~Lt~~vPgF~~ls~sKqRRLi~~ALE 54 (92)
T PF10330_consen 28 GYLTTSVPGFSDLSPSKQRRLIMAALE 54 (92)
T ss_pred HHHhccCCCcccCCHHHHHHHHHHHHh
Confidence 345568999999999988888665543
No 78
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=23.20 E-value=2.8e+02 Score=23.10 Aligned_cols=47 Identities=11% Similarity=0.029 Sum_probs=35.3
Q ss_pred eeeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 49 LVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 49 ~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
...++.|+.-.-++-.+..++++++|...+....+.. ..+.+|+++=
T Consensus 337 ~~~v~~g~~~~~~~~~~~SIllv~~G~g~l~~~t~~~-----~~v~rG~V~f 383 (411)
T KOG2757|consen 337 ETKVPTGESYKFPGVDGPSILLVLKGSGILKTDTDSK-----ILVNRGDVLF 383 (411)
T ss_pred EeecCCCceEEeecCCCceEEEEEecceEEecCCCCc-----eeeccCcEEE
Confidence 3566778888888888999999999998887752321 2466888873
No 79
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=21.30 E-value=2.8e+02 Score=21.09 Aligned_cols=33 Identities=9% Similarity=0.160 Sum_probs=21.2
Q ss_pred CeEEEEEeeEEEEeeecCCceeeeeeeeCCCCee
Q 038042 66 EKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFC 99 (162)
Q Consensus 66 ~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~ 99 (162)
..+|++++|+.+..-.+.... ..+..+++||+.
T Consensus 104 ~E~y~vi~G~g~m~v~~~~G~-~~v~~~~~Gd~i 136 (209)
T COG2140 104 PEIYYVLKGEGRMLVQKPEGE-ARVIAVRAGDVI 136 (209)
T ss_pred ccEEEEEeccEEEEEEcCCCc-EEEEEecCCcEE
Confidence 359999999988775433211 122467888865
Done!