Query 038042
Match_columns 162
No_of_seqs 112 out of 1257
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 11:34:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038042.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038042hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ptm_A Hyperpolarization-activ 99.9 2.8E-25 9.7E-30 163.8 7.7 142 4-161 53-197 (198)
2 3bpz_A Potassium/sodium hyperp 99.9 1E-24 3.6E-29 161.3 7.5 134 4-154 54-190 (202)
3 3mdp_A Cyclic nucleotide-bindi 99.9 1.1E-23 3.8E-28 146.4 11.0 129 23-159 5-137 (142)
4 4f8a_A Potassium voltage-gated 99.9 4.7E-23 1.6E-27 146.1 12.9 129 3-146 8-138 (160)
5 2pqq_A Putative transcriptiona 99.9 1.6E-22 5.6E-27 141.4 13.1 114 23-146 4-119 (149)
6 3ukn_A Novel protein similar t 99.9 6.5E-23 2.2E-27 152.5 11.4 139 3-157 57-198 (212)
7 3idb_B CAMP-dependent protein 99.9 2.9E-22 9.8E-27 142.9 13.1 121 21-151 35-157 (161)
8 2z69_A DNR protein; beta barre 99.9 1.9E-22 6.6E-27 141.9 12.1 128 22-159 10-141 (154)
9 3gyd_A CNMP-BD protein, cyclic 99.9 1.6E-22 5.5E-27 148.1 11.6 123 20-150 35-158 (187)
10 3ocp_A PRKG1 protein; serine/t 99.9 7.2E-22 2.5E-26 137.4 11.9 124 6-146 7-132 (139)
11 1vp6_A CNBD, cyclic-nucleotide 99.9 4.5E-22 1.5E-26 137.9 9.7 124 21-159 8-132 (138)
12 3dn7_A Cyclic nucleotide bindi 99.9 8.9E-22 3E-26 144.0 11.5 115 22-146 5-122 (194)
13 4ev0_A Transcription regulator 99.9 1.4E-21 4.7E-26 144.9 11.0 111 26-146 1-113 (216)
14 1wgp_A Probable cyclic nucleot 99.9 9.7E-22 3.3E-26 136.2 9.5 126 22-149 4-134 (137)
15 3e97_A Transcriptional regulat 99.9 1.6E-21 5.4E-26 146.3 10.5 115 22-146 4-120 (231)
16 3dv8_A Transcriptional regulat 99.9 3.5E-21 1.2E-25 143.1 12.0 114 23-146 2-119 (220)
17 1zyb_A Transcription regulator 99.9 4.7E-21 1.6E-25 144.3 12.2 116 21-146 15-135 (232)
18 3fx3_A Cyclic nucleotide-bindi 99.9 2.2E-21 7.6E-26 146.0 10.3 116 21-146 8-125 (237)
19 3dkw_A DNR protein; CRP-FNR, H 99.9 1.7E-21 5.8E-26 145.4 9.2 115 22-146 7-124 (227)
20 3pna_A CAMP-dependent protein 99.9 6.7E-21 2.3E-25 134.9 11.4 113 21-146 35-147 (154)
21 3d0s_A Transcriptional regulat 99.9 1.5E-21 5.3E-26 146.0 8.4 115 22-146 4-120 (227)
22 3iwz_A CAP-like, catabolite ac 99.8 1E-20 3.5E-25 141.5 12.3 116 21-145 8-125 (230)
23 4ava_A Lysine acetyltransferas 99.8 1.2E-20 4.1E-25 148.9 12.0 120 22-152 11-132 (333)
24 2d93_A RAP guanine nucleotide 99.8 1.4E-20 4.8E-25 130.2 10.7 113 21-146 13-127 (134)
25 3shr_A CGMP-dependent protein 99.8 3.7E-20 1.3E-24 143.9 13.1 129 21-159 154-286 (299)
26 3shr_A CGMP-dependent protein 99.8 7.4E-20 2.5E-24 142.2 12.8 128 2-146 19-148 (299)
27 2gau_A Transcriptional regulat 99.8 1.5E-20 5.1E-25 141.0 8.5 109 28-146 14-124 (232)
28 3of1_A CAMP-dependent protein 99.8 1.5E-19 5.1E-24 136.1 11.1 113 21-146 4-116 (246)
29 3ryp_A Catabolite gene activat 99.8 3.7E-19 1.3E-23 131.2 12.5 108 30-146 2-111 (210)
30 3tnp_B CAMP-dependent protein 99.8 7E-19 2.4E-23 143.6 14.2 116 21-146 142-258 (416)
31 2qcs_B CAMP-dependent protein 99.8 4E-19 1.4E-23 137.3 11.5 113 21-146 36-148 (291)
32 2qcs_B CAMP-dependent protein 99.8 1.2E-18 4E-23 134.7 14.0 124 22-154 155-281 (291)
33 2fmy_A COOA, carbon monoxide o 99.8 1.7E-19 5.9E-24 134.3 8.2 106 24-146 4-110 (220)
34 3of1_A CAMP-dependent protein 99.8 5.5E-19 1.9E-23 133.0 10.6 113 22-146 123-235 (246)
35 3tnp_B CAMP-dependent protein 99.8 6.3E-19 2.2E-23 143.9 11.7 115 22-146 265-387 (416)
36 1o7f_A CAMP-dependent RAP1 gua 99.8 1.4E-18 4.7E-23 142.8 13.4 117 21-146 39-157 (469)
37 2oz6_A Virulence factor regula 99.8 1.6E-18 5.6E-23 127.5 12.3 106 35-146 1-108 (207)
38 1ft9_A Carbon monoxide oxidati 99.8 2.8E-19 9.6E-24 133.4 7.0 105 25-146 1-106 (222)
39 3kcc_A Catabolite gene activat 99.8 3.5E-18 1.2E-22 130.8 12.5 107 31-146 53-161 (260)
40 4din_B CAMP-dependent protein 99.8 8.6E-19 2.9E-23 141.5 8.8 124 22-154 246-372 (381)
41 1o5l_A Transcriptional regulat 99.8 1.2E-18 4.2E-23 129.4 8.2 110 28-146 3-114 (213)
42 4din_B CAMP-dependent protein 99.8 8.3E-19 2.8E-23 141.6 7.5 113 21-146 127-239 (381)
43 1o7f_A CAMP-dependent RAP1 gua 99.7 2.8E-17 9.5E-22 135.0 15.4 113 22-146 335-449 (469)
44 3e6c_C CPRK, cyclic nucleotide 99.7 5.3E-18 1.8E-22 128.7 9.8 109 25-146 10-120 (250)
45 2bgc_A PRFA; bacterial infecti 99.7 7.6E-17 2.6E-21 121.6 11.5 104 33-146 2-111 (238)
46 3beh_A MLL3241 protein; transm 99.7 7.1E-19 2.4E-23 140.6 0.0 121 22-157 226-347 (355)
47 3cf6_E RAP guanine nucleotide 99.7 1.3E-16 4.5E-21 137.6 11.9 114 21-146 29-144 (694)
48 3la7_A Global nitrogen regulat 99.7 1.1E-16 3.7E-21 121.2 10.1 102 37-146 30-136 (243)
49 4f7z_A RAP guanine nucleotide 99.7 4E-16 1.4E-20 139.1 13.7 116 22-146 40-157 (999)
50 4f7z_A RAP guanine nucleotide 99.6 4E-15 1.4E-19 132.6 14.1 112 21-144 334-447 (999)
51 3b02_A Transcriptional regulat 99.6 6.8E-15 2.3E-19 107.6 7.1 79 50-139 2-82 (195)
52 2zcw_A TTHA1359, transcription 99.4 1.8E-13 6.3E-18 100.3 6.2 85 43-139 1-89 (202)
53 3rns_A Cupin 2 conserved barre 93.9 0.63 2.1E-05 34.1 9.8 70 47-135 39-108 (227)
54 3fjs_A Uncharacterized protein 91.4 1.9 6.4E-05 27.8 9.0 66 48-132 39-104 (114)
55 2ozj_A Cupin 2, conserved barr 90.3 2.3 8E-05 27.0 8.2 65 50-133 43-107 (114)
56 3lwc_A Uncharacterized protein 88.9 1.5 5E-05 28.9 6.4 45 49-100 44-88 (119)
57 2xp1_A SPT6; transcription, IW 87.1 1.4 4.9E-05 31.4 5.7 46 21-72 6-51 (178)
58 1yhf_A Hypothetical protein SP 85.9 4.8 0.00016 25.4 9.2 67 48-133 43-109 (115)
59 1o5u_A Novel thermotoga mariti 85.8 2.6 8.8E-05 26.9 6.0 58 36-100 21-79 (101)
60 3rns_A Cupin 2 conserved barre 85.6 6 0.0002 28.8 8.7 66 49-133 157-223 (227)
61 2pfw_A Cupin 2, conserved barr 84.5 5.7 0.0002 25.0 8.8 67 48-133 37-103 (116)
62 3h8u_A Uncharacterized conserv 84.0 2.4 8.1E-05 27.4 5.4 48 48-100 42-90 (125)
63 1dgw_A Canavalin; duplicated s 83.6 2.1 7.3E-05 30.1 5.3 52 47-100 43-94 (178)
64 4e2g_A Cupin 2 conserved barre 83.1 7 0.00024 25.0 7.9 47 48-100 44-90 (126)
65 3ibm_A Cupin 2, conserved barr 82.7 8.5 0.00029 26.6 8.1 46 49-100 60-105 (167)
66 2gu9_A Tetracenomycin polyketi 81.6 3.2 0.00011 25.9 5.2 47 48-100 24-73 (113)
67 3es4_A Uncharacterized protein 81.0 1.6 5.6E-05 28.9 3.5 45 50-100 47-91 (116)
68 3bcw_A Uncharacterized protein 80.4 2.1 7.3E-05 28.3 4.0 45 50-100 54-98 (123)
69 2i45_A Hypothetical protein; n 80.2 2.5 8.6E-05 26.5 4.3 69 53-139 36-104 (107)
70 3nw4_A Gentisate 1,2-dioxygena 79.8 8.2 0.00028 30.7 7.8 62 63-143 297-358 (368)
71 3bu7_A Gentisate 1,2-dioxygena 79.8 6.2 0.00021 31.6 7.2 76 50-144 299-377 (394)
72 1v70_A Probable antibiotics sy 79.7 4.9 0.00017 24.5 5.5 47 48-100 31-78 (105)
73 4axo_A EUTQ, ethanolamine util 78.4 9.4 0.00032 26.3 6.9 31 64-100 83-113 (151)
74 2d40_A Z3393, putative gentisa 77.7 12 0.00041 29.3 8.2 59 64-141 287-345 (354)
75 3es1_A Cupin 2, conserved barr 77.3 3.3 0.00011 29.3 4.4 45 50-99 84-128 (172)
76 2fqp_A Hypothetical protein BP 76.2 1.7 5.9E-05 27.0 2.5 48 49-100 22-70 (97)
77 3bu7_A Gentisate 1,2-dioxygena 75.8 2.2 7.5E-05 34.3 3.5 49 48-101 126-174 (394)
78 4b29_A Dimethylsulfoniopropion 75.7 7.5 0.00026 28.5 6.1 46 50-100 137-182 (217)
79 3d0j_A Uncharacterized protein 75.6 16 0.00056 24.8 7.4 65 59-136 44-110 (140)
80 3d82_A Cupin 2, conserved barr 75.5 9 0.00031 23.3 5.8 52 65-135 50-101 (102)
81 2q1z_B Anti-sigma factor CHRR, 75.4 9.9 0.00034 27.1 6.7 65 46-133 126-192 (195)
82 1yfu_A 3-hydroxyanthranilate-3 74.6 4.7 0.00016 28.6 4.5 85 37-137 11-113 (174)
83 2f4p_A Hypothetical protein TM 73.6 17 0.0006 24.2 7.8 47 49-100 52-98 (147)
84 2pyt_A Ethanolamine utilizatio 73.5 17 0.00059 24.1 7.4 44 49-100 61-104 (133)
85 2b8m_A Hypothetical protein MJ 73.4 6 0.00021 25.1 4.7 45 50-100 32-77 (117)
86 1fi2_A Oxalate oxidase, germin 71.9 16 0.00054 25.9 7.0 52 48-100 75-130 (201)
87 1uij_A Beta subunit of beta co 70.8 6.7 0.00023 31.6 5.3 52 47-100 51-102 (416)
88 2ea7_A 7S globulin-1; beta bar 70.6 7.1 0.00024 31.6 5.4 52 47-100 63-114 (434)
89 1o4t_A Putative oxalate decarb 70.3 9 0.00031 25.1 5.1 46 49-100 61-107 (133)
90 3h7j_A Bacilysin biosynthesis 70.3 12 0.00041 27.4 6.2 45 50-100 150-195 (243)
91 2vpv_A Protein MIF2, MIF2P; nu 70.2 10 0.00035 26.5 5.5 31 64-100 109-139 (166)
92 3kgz_A Cupin 2 conserved barre 70.2 5.5 0.00019 27.3 4.1 45 50-100 49-93 (156)
93 2bnm_A Epoxidase; oxidoreducta 70.2 24 0.00083 24.4 8.2 49 50-100 122-173 (198)
94 4e2q_A Ureidoglycine aminohydr 69.9 17 0.00057 27.5 7.0 69 49-135 74-142 (266)
95 3jzv_A Uncharacterized protein 69.8 5.2 0.00018 27.8 4.0 45 50-100 58-102 (166)
96 1sfn_A Conserved hypothetical 69.6 8 0.00027 28.5 5.1 48 47-100 167-215 (246)
97 2d40_A Z3393, putative gentisa 69.3 14 0.00049 28.8 6.8 47 49-100 104-150 (354)
98 3fz3_A Prunin; TREE NUT allerg 69.3 20 0.00068 29.9 7.8 54 46-100 395-450 (531)
99 2q30_A Uncharacterized protein 69.0 17 0.00059 22.3 8.8 67 49-133 37-105 (110)
100 1vj2_A Novel manganese-contain 68.9 7.2 0.00025 25.3 4.3 46 49-100 52-97 (126)
101 3nw4_A Gentisate 1,2-dioxygena 68.5 5.1 0.00018 31.8 4.0 48 49-101 107-154 (368)
102 2cav_A Protein (canavalin); vi 68.3 7.9 0.00027 31.5 5.2 51 48-100 89-139 (445)
103 2d5f_A Glycinin A3B4 subunit; 67.8 22 0.00075 29.3 7.8 58 42-100 364-423 (493)
104 3l2h_A Putative sugar phosphat 67.6 6.3 0.00022 26.7 4.0 46 49-100 50-97 (162)
105 3cew_A Uncharacterized cupin p 67.2 8.6 0.00029 24.7 4.4 46 49-100 30-77 (125)
106 3h7j_A Bacilysin biosynthesis 67.1 11 0.00037 27.6 5.4 47 47-99 36-82 (243)
107 4i4a_A Similar to unknown prot 66.9 22 0.00074 22.6 8.4 77 49-144 38-118 (128)
108 3i7d_A Sugar phosphate isomera 66.6 6.3 0.00022 27.1 3.8 46 49-100 47-94 (163)
109 1fxz_A Glycinin G1; proglycini 66.4 17 0.00059 29.8 6.9 53 47-100 340-394 (476)
110 1sq4_A GLXB, glyoxylate-induce 66.3 11 0.00037 28.4 5.4 48 47-100 193-241 (278)
111 2opk_A Hypothetical protein; p 66.1 7.8 0.00027 24.7 4.0 34 63-100 51-84 (112)
112 1y9q_A Transcriptional regulat 66.0 16 0.00056 25.3 6.0 45 50-100 109-155 (192)
113 3c3v_A Arachin ARAH3 isoform; 64.6 20 0.00069 29.7 7.0 57 43-100 370-428 (510)
114 2e9q_A 11S globulin subunit be 64.6 28 0.00097 28.3 7.8 55 45-100 322-378 (459)
115 3or8_A Transcription elongatio 64.5 13 0.00046 26.8 5.3 39 27-70 6-45 (197)
116 3lag_A Uncharacterized protein 64.3 2.3 8E-05 26.8 1.1 49 48-99 20-69 (98)
117 3ebr_A Uncharacterized RMLC-li 64.3 19 0.00063 24.8 5.9 67 46-133 43-113 (159)
118 1sfn_A Conserved hypothetical 64.2 39 0.0013 24.6 9.0 44 49-100 54-97 (246)
119 1zvf_A 3-hydroxyanthranilate 3 64.1 9.1 0.00031 27.1 4.2 88 37-137 11-115 (176)
120 1sef_A Conserved hypothetical 61.8 13 0.00046 27.7 5.1 47 48-100 185-232 (274)
121 2vqa_A SLL1358 protein, MNCA; 61.6 25 0.00086 27.0 6.8 50 49-100 56-107 (361)
122 1lr5_A Auxin binding protein 1 61.4 14 0.00047 25.0 4.8 52 49-100 45-99 (163)
123 3myx_A Uncharacterized protein 61.1 11 0.00038 28.0 4.4 31 65-100 186-216 (238)
124 3s7i_A Allergen ARA H 1, clone 60.7 15 0.0005 29.6 5.4 50 49-100 48-97 (418)
125 2oa2_A BH2720 protein; 1017534 60.3 28 0.00095 23.1 6.1 51 50-100 48-99 (148)
126 3kgl_A Cruciferin; 11S SEED gl 59.9 29 0.001 28.4 7.1 55 45-100 323-379 (466)
127 3ksc_A LEGA class, prolegumin; 59.9 33 0.0011 28.3 7.5 54 46-100 359-414 (496)
128 1j58_A YVRK protein; cupin, de 59.5 25 0.00086 27.4 6.6 52 48-100 82-133 (385)
129 1rc6_A Hypothetical protein YL 59.3 18 0.00062 26.7 5.4 46 49-100 63-110 (261)
130 2qnk_A 3-hydroxyanthranilate 3 59.1 43 0.0015 25.5 7.4 69 48-136 210-278 (286)
131 2o1q_A Putative acetyl/propion 59.0 19 0.00064 24.2 5.0 51 47-101 46-96 (145)
132 2vqa_A SLL1358 protein, MNCA; 58.9 29 0.001 26.6 6.8 50 48-100 237-289 (361)
133 2qnk_A 3-hydroxyanthranilate 3 57.8 32 0.0011 26.2 6.5 58 64-137 50-108 (286)
134 1y3t_A Hypothetical protein YX 57.1 24 0.00081 26.7 5.9 46 49-100 50-96 (337)
135 3qac_A 11S globulin SEED stora 56.1 49 0.0017 27.0 7.8 54 46-100 324-379 (465)
136 2o8q_A Hypothetical protein; c 54.1 16 0.00054 23.6 3.9 31 65-100 64-94 (134)
137 1rc6_A Hypothetical protein YL 53.9 20 0.00067 26.5 4.8 47 48-100 182-229 (261)
138 2phl_A Phaseolin; plant SEED s 53.7 17 0.00059 29.0 4.7 50 47-98 54-103 (397)
139 1j58_A YVRK protein; cupin, de 52.3 79 0.0027 24.4 9.1 49 49-100 261-312 (385)
140 4e2q_A Ureidoglycine aminohydr 51.8 26 0.00088 26.4 5.2 48 47-100 188-236 (266)
141 1sq4_A GLXB, glyoxylate-induce 51.3 15 0.00051 27.6 3.8 46 49-100 72-119 (278)
142 3ht1_A REMF protein; cupin fol 50.9 12 0.00042 24.3 3.0 31 65-100 59-90 (145)
143 1juh_A Quercetin 2,3-dioxygena 50.5 77 0.0026 24.5 8.0 70 55-142 262-334 (350)
144 3o14_A Anti-ecfsigma factor, C 47.5 50 0.0017 24.0 6.0 64 48-134 46-109 (223)
145 2phl_A Phaseolin; plant SEED s 47.3 45 0.0015 26.6 6.2 71 50-133 244-321 (397)
146 3myx_A Uncharacterized protein 46.3 21 0.00073 26.4 3.9 40 54-100 55-94 (238)
147 3cjx_A Protein of unknown func 45.4 46 0.0016 23.0 5.3 48 47-101 45-92 (165)
148 1x82_A Glucose-6-phosphate iso 44.5 43 0.0015 23.4 5.2 34 66-100 97-130 (190)
149 2e9q_A 11S globulin subunit be 39.6 53 0.0018 26.8 5.5 43 39-81 57-99 (459)
150 1r1p_A GRB2-related adaptor pr 39.0 50 0.0017 20.4 4.3 36 26-66 6-42 (100)
151 1sef_A Conserved hypothetical 38.6 28 0.00095 25.9 3.5 46 49-100 66-113 (274)
152 1vr3_A Acireductone dioxygenas 36.7 64 0.0022 23.0 5.0 35 65-100 104-138 (191)
153 3o14_A Anti-ecfsigma factor, C 36.3 1.2E+02 0.0041 21.9 8.2 63 46-132 147-210 (223)
154 1fxz_A Glycinin G1; proglycini 34.5 68 0.0023 26.2 5.5 49 32-81 36-84 (476)
155 2el8_A Signal-transducing adap 33.9 86 0.0029 20.0 5.0 38 26-67 18-56 (118)
156 2dlz_A Protein VAV-2; RHO fami 33.9 78 0.0027 20.2 4.8 36 26-66 13-49 (118)
157 1uij_A Beta subunit of beta co 33.5 96 0.0033 24.7 6.1 75 46-134 250-339 (416)
158 2arc_A ARAC, arabinose operon 31.5 57 0.002 21.3 3.9 32 63-100 36-67 (164)
159 4h7l_A Uncharacterized protein 29.8 28 0.00096 24.1 2.1 31 64-100 65-97 (157)
160 1juh_A Quercetin 2,3-dioxygena 29.1 98 0.0033 23.9 5.4 34 65-100 71-105 (350)
161 2qjv_A Uncharacterized IOLB-li 27.3 2E+02 0.0068 21.6 8.3 91 33-135 17-110 (270)
162 2ea7_A 7S globulin-1; beta bar 26.1 1.2E+02 0.0042 24.3 5.6 79 42-134 263-355 (434)
163 3eaz_A Tyrosine-protein kinase 25.5 88 0.003 19.3 3.8 37 26-67 5-42 (106)
164 2lnw_A VAV-2, guanine nucleoti 25.4 1.4E+02 0.0047 19.2 5.6 39 26-69 19-58 (122)
165 3us4_A Megakaryocyte-associate 25.2 93 0.0032 18.8 3.8 36 27-67 3-39 (98)
166 3ksc_A LEGA class, prolegumin; 25.1 1.6E+02 0.0053 24.3 6.0 43 39-81 40-82 (496)
167 1d4t_A T cell signal transduct 24.8 94 0.0032 19.1 3.9 35 28-66 3-38 (104)
168 1mil_A SHC adaptor protein; SH 24.2 49 0.0017 20.6 2.3 33 26-65 4-37 (104)
169 2d5f_A Glycinin A3B4 subunit; 24.2 1.6E+02 0.0056 24.1 6.0 42 40-81 40-81 (493)
170 3k2m_A Proto-oncogene tyrosine 23.7 1E+02 0.0034 19.3 3.9 37 26-67 2-39 (112)
171 3tkz_A Tyrosine-protein phosph 21.5 1.1E+02 0.0039 18.9 3.8 38 26-67 4-42 (109)
172 1ka6_A SH2 domain protein 1A; 20.8 1.3E+02 0.0045 19.4 4.1 35 28-66 3-38 (128)
173 3qac_A 11S globulin SEED stora 20.7 1.8E+02 0.0062 23.7 5.5 43 39-81 44-86 (465)
174 2cav_A Protein (canavalin); vi 20.1 2.5E+02 0.0087 22.5 6.3 59 41-100 277-347 (445)
No 1
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.92 E-value=2.8e-25 Score=163.75 Aligned_cols=142 Identities=16% Similarity=0.239 Sum_probs=122.8
Q ss_pred cccCCcCce--eeeeccccchHhhhhhCccccccCHHHHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeee
Q 038042 4 LFKLPCGLN--IITHANTLTPLHSLVLHQVFDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPT 81 (162)
Q Consensus 4 ~~~lp~~~~--~~~~~~~~~~~~~L~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~ 81 (162)
|..||+.|+ |..+ .+.++|+++|+|.+++++++..++..++...|++|++|+++|+.++.+|||.+|.|+++..
T Consensus 53 l~~l~~~Lr~~i~~~----~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~~ 128 (198)
T 2ptm_A 53 FREVSESIRQDVANY----NCRDLVASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIMS 128 (198)
T ss_dssp HHHSCHHHHHHHHHH----HTHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEECT
T ss_pred HHHcCHHHHHHHHHH----HHHHHHhcCcchhcCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEec
Confidence 567899999 6666 6789999999999999999999999999999999999999999999999999999999986
Q ss_pred cCCceeeeeeeeCCCCeeecccccCccccccCCCCcceeEEEecceeEEEEEeHHHHHHHHhhCC-CCCCchhHHHhhhc
Q 038042 82 TIRTTTFSFNASNDGHFCGEELLPRASVLQLGGLPISTRTVIAHTPVEAFVIEADDWKQLVNSFM-LPDDQLPYIFRLTQ 160 (162)
Q Consensus 82 ~~~~~~~~~~~~~~G~~~Ge~~l~~~~~~~~~~~~~~~~tv~a~~~~~l~~i~~~~~~~l~~~~p-~~~~~l~~~~~~~~ 160 (162)
+|+ . ...+++|++||+.+++.+. ++++++.|.++|+++.+++++|.+++.++| +....++...+++.
T Consensus 129 ~g~--~--~~~l~~G~~fGe~~~~~~~--------~~~~~~~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~rl~ 196 (198)
T 2ptm_A 129 DGV--I--ATSLSDGSYFGEICLLTRE--------RRVASVKCETYCTLFSLSVQHFNQVLDEFPAMRKTMEEIAVRRLT 196 (198)
T ss_dssp TSC--E--EEEECTTCEESCHHHHHSS--------CCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHTCC-
T ss_pred CCe--E--EEEecCCCEechHHHcCCC--------ccceEEEEeeEEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHh
Confidence 664 2 3679999999998877543 788999999999999999999999999999 55555555555554
Q ss_pred c
Q 038042 161 K 161 (162)
Q Consensus 161 ~ 161 (162)
+
T Consensus 197 ~ 197 (198)
T 2ptm_A 197 R 197 (198)
T ss_dssp -
T ss_pred c
Confidence 4
No 2
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.91 E-value=1e-24 Score=161.31 Aligned_cols=134 Identities=22% Similarity=0.305 Sum_probs=117.2
Q ss_pred cccCCcCce--eeeeccccchHhhhhhCccccccCHHHHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeee
Q 038042 4 LFKLPCGLN--IITHANTLTPLHSLVLHQVFDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPT 81 (162)
Q Consensus 4 ~~~lp~~~~--~~~~~~~~~~~~~L~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~ 81 (162)
|..||+.|+ |..+ .+.++|+++|+|.+++++++..++..++...|++|++|+++|+.++.+|||.+|.|+++..
T Consensus 54 l~~l~~~L~~~i~~~----~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~ 129 (202)
T 3bpz_A 54 LGELNGPLREKIVNF----NCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTK 129 (202)
T ss_dssp HHHSCHHHHHHHHHH----HTHHHHHTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEECT
T ss_pred HHHcCHHHHHHHHHH----HHHHHHhcCCchhcCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEEC
Confidence 567999998 6656 6788999999999999999999999999999999999999999999999999999999876
Q ss_pred cCCceeeeeeeeCCCCeeecccccCccccccCCCCcceeEEEecceeEEEEEeHHHHHHHHhhCC-CCCCchhH
Q 038042 82 TIRTTTFSFNASNDGHFCGEELLPRASVLQLGGLPISTRTVIAHTPVEAFVIEADDWKQLVNSFM-LPDDQLPY 154 (162)
Q Consensus 82 ~~~~~~~~~~~~~~G~~~Ge~~l~~~~~~~~~~~~~~~~tv~a~~~~~l~~i~~~~~~~l~~~~p-~~~~~l~~ 154 (162)
+|+. ..+++|++||+.+++.+. +++++++|.++|+++.+++++|.+++.++| +....++.
T Consensus 130 ~g~~-----~~l~~G~~fGe~~~~~~~--------~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~ 190 (202)
T 3bpz_A 130 GNKE-----MKLSDGSYFGEICLLTRG--------RRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETV 190 (202)
T ss_dssp TSCC-----EEEETTCEECHHHHHHCS--------BCSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHHHH
T ss_pred CCeE-----EEEcCCCEeccHHHhcCC--------CcccEEEEeeEEEEEEEEHHHHHHHHHHCHHHHHHHHHH
Confidence 6643 257899999998877542 788999999999999999999999999999 44433333
No 3
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.90 E-value=1.1e-23 Score=146.44 Aligned_cols=129 Identities=12% Similarity=0.157 Sum_probs=108.0
Q ss_pred HhhhhhCccccccCHHHHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeee--cCCcee-eeeeeeCCCCee
Q 038042 23 LHSLVLHQVFDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPT--TIRTTT-FSFNASNDGHFC 99 (162)
Q Consensus 23 ~~~L~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~--~~~~~~-~~~~~~~~G~~~ 99 (162)
.++|+++|+|+++++++++.++..++.+.|++|++|+++|+.++.+|+|++|.|+++.. +|+... -.+..+++|++|
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~f 84 (142)
T 3mdp_A 5 PERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIF 84 (142)
T ss_dssp TTGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEE
T ss_pred HHHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEe
Confidence 56899999999999999999999999999999999999999999999999999999875 343333 003679999999
Q ss_pred ecccccCccccccCCCCcceeEEEecceeEEEEEeHHHHHHHHhhCC-CCCCchhHHHhhh
Q 038042 100 GEELLPRASVLQLGGLPISTRTVIAHTPVEAFVIEADDWKQLVNSFM-LPDDQLPYIFRLT 159 (162)
Q Consensus 100 Ge~~l~~~~~~~~~~~~~~~~tv~a~~~~~l~~i~~~~~~~l~~~~p-~~~~~l~~~~~~~ 159 (162)
|+.+++.+. ++..+++|.++|+++.+++++|.+++.++| +....++...+.+
T Consensus 85 G~~~~~~~~--------~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l 137 (142)
T 3mdp_A 85 GVSSLIKPY--------HYTSSARATKPVRVVDINGARLREMSENNQALGQVLMNNVAAAV 137 (142)
T ss_dssp CGGGSSTTC--------BCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred chHHHcCCC--------CceEEEEECCcEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHH
Confidence 998887543 788999999999999999999999999999 5555555544443
No 4
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.90 E-value=4.7e-23 Score=146.07 Aligned_cols=129 Identities=19% Similarity=0.246 Sum_probs=109.0
Q ss_pred ccccCCcCce--eeeeccccchHhhhhhCccccccCHHHHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEee
Q 038042 3 CLFKLPCGLN--IITHANTLTPLHSLVLHQVFDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEP 80 (162)
Q Consensus 3 ~~~~lp~~~~--~~~~~~~~~~~~~L~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~ 80 (162)
.|..||..++ +..+ ....+|+++|+|.++++++++.++..++.+.|++|++|+++|+.++++|+|.+|.|+++.
T Consensus 8 il~~lp~~l~~~i~~~----~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~ 83 (160)
T 4f8a_A 8 VLQICPKDMRADICVH----LNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQ 83 (160)
T ss_dssp -------CCHHHHHHH----HTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEE
T ss_pred HHHHCCHHHHHHHHHH----HHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEE
Confidence 4678999999 6666 678899999999999999999999999999999999999999999999999999999987
Q ss_pred ecCCceeeeeeeeCCCCeeecccccCccccccCCCCcceeEEEecceeEEEEEeHHHHHHHHhhCC
Q 038042 81 TTIRTTTFSFNASNDGHFCGEELLPRASVLQLGGLPISTRTVIAHTPVEAFVIEADDWKQLVNSFM 146 (162)
Q Consensus 81 ~~~~~~~~~~~~~~~G~~~Ge~~l~~~~~~~~~~~~~~~~tv~a~~~~~l~~i~~~~~~~l~~~~p 146 (162)
. + ..+ ..+++|++||+.+++.+. .. ++..+++|.++|+++.+++++|.+++.++|
T Consensus 84 ~-~--~~~--~~~~~G~~fG~~~~~~~~-----~~-~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p 138 (160)
T 4f8a_A 84 D-D--EVV--AILGKGDVFGDVFWKEAT-----LA-QSCANVRALTYCDLHVIKRDALQKVLEFYT 138 (160)
T ss_dssp T-T--EEE--EEEETTCEEECCTTTCSS-----CC-BCSSEEEESSCEEEEEEEHHHHHHHHHHCH
T ss_pred C-C--EEE--EEecCCCEeCcHHHhcCc-----cc-ceEEEEEECCceEEEEEcHHHHHHHHHHHH
Confidence 3 2 222 678999999998887541 01 788999999999999999999999999999
No 5
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.89 E-value=1.6e-22 Score=141.37 Aligned_cols=114 Identities=19% Similarity=0.217 Sum_probs=103.8
Q ss_pred HhhhhhCccccccCHHHHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeeec--CCceeeeeeeeCCCCeee
Q 038042 23 LHSLVLHQVFDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTT--IRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 23 ~~~L~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~--~~~~~~~~~~~~~G~~~G 100 (162)
.++++++|+|.++++++++.++..++.+.|++|++|+++|++++++|+|++|.++++..+ |+... +..+++|++||
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G 81 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENM--LAVVGPSELIG 81 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEE--EEEECTTCEES
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEE--EEEcCCcCEec
Confidence 578999999999999999999999999999999999999999999999999999999763 44333 47899999999
Q ss_pred cccccCccccccCCCCcceeEEEecceeEEEEEeHHHHHHHHhhCC
Q 038042 101 EELLPRASVLQLGGLPISTRTVIAHTPVEAFVIEADDWKQLVNSFM 146 (162)
Q Consensus 101 e~~l~~~~~~~~~~~~~~~~tv~a~~~~~l~~i~~~~~~~l~~~~p 146 (162)
+.+++.+. ++..+++|.++|+++.+++++|.+++.++|
T Consensus 82 ~~~~~~~~--------~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p 119 (149)
T 2pqq_A 82 ELSLFDPG--------PRTATGTALTEVKLLALGHGDLQPWLNVRP 119 (149)
T ss_dssp GGGGTSCE--------ECSSEEEESSCEEEEEEEGGGHHHHHHHCT
T ss_pred hHHhcCCC--------CcceEEEEccceEEEEEeHHHHHHHHHhCc
Confidence 98887643 788999999999999999999999999999
No 6
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.89 E-value=6.5e-23 Score=152.54 Aligned_cols=139 Identities=17% Similarity=0.245 Sum_probs=116.7
Q ss_pred ccccCCcCce--eeeeccccchHhhhhhCccccccCHHHHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEee
Q 038042 3 CLFKLPCGLN--IITHANTLTPLHSLVLHQVFDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEP 80 (162)
Q Consensus 3 ~~~~lp~~~~--~~~~~~~~~~~~~L~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~ 80 (162)
.|..||+.|+ |..+.+ ..++ ++|+|.+++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++.
T Consensus 57 il~~Lp~~L~~~i~~~~~----~~l~-~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~ 131 (212)
T 3ukn_A 57 LLKDFPDELRADIAMHLN----KELL-QLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLK 131 (212)
T ss_dssp TTTTSCHHHHHHHHTTCC----CGGG-GSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEES
T ss_pred HHHHcCHHHHHHHHHHHH----HHHH-hcHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEE
Confidence 5789999999 666633 3444 89999999999999999999999999999999999999999999999999997
Q ss_pred ecCCceeeeeeeeCCCCeeecccccCccccccCCCCcceeEEEecceeEEEEEeHHHHHHHHhhCC-CCCCchhHHHh
Q 038042 81 TTIRTTTFSFNASNDGHFCGEELLPRASVLQLGGLPISTRTVIAHTPVEAFVIEADDWKQLVNSFM-LPDDQLPYIFR 157 (162)
Q Consensus 81 ~~~~~~~~~~~~~~~G~~~Ge~~l~~~~~~~~~~~~~~~~tv~a~~~~~l~~i~~~~~~~l~~~~p-~~~~~l~~~~~ 157 (162)
+| .. +..+++|++||+.+++.+. ..+++++++|.++|+++.+++++|.+++.++| +....++...+
T Consensus 132 -~~--~~--~~~l~~G~~fGe~~~~~~~------~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~ 198 (212)
T 3ukn_A 132 -DN--TV--LAILGKGDLIGSDSLTKEQ------VIKTNANVKALTYCDLQYISLKGLREVLRLYPEYAQKFVSEIQH 198 (212)
T ss_dssp -SS--CE--EEEECTTCEEECSCCSSSS------CCBBCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred -CC--eE--EEEecCCCCcCcHHhccCC------CCCcceEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHH
Confidence 44 22 3679999999998887541 11678999999999999999999999999999 54444444333
No 7
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.89 E-value=2.9e-22 Score=142.86 Aligned_cols=121 Identities=12% Similarity=0.109 Sum_probs=107.6
Q ss_pred chHhhhhhCccccccCHHHHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeee-cCCceeeeeeeeCCCCee
Q 038042 21 TPLHSLVLHQVFDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPT-TIRTTTFSFNASNDGHFC 99 (162)
Q Consensus 21 ~~~~~L~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~-~~~~~~~~~~~~~~G~~~ 99 (162)
....+|+++|+|.+++++++..++..++.+.|++|++|+++|+.++++|+|++|.|+++.. +|+... +..+++|++|
T Consensus 35 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~--~~~~~~G~~f 112 (161)
T 3idb_B 35 RLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRC--VGNYDNRGSF 112 (161)
T ss_dssp HHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEEETTEEEE--EEEEESCCEE
T ss_pred HHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEEcCCCCeEE--EEEcCCCCEe
Confidence 5667899999999999999999999999999999999999999999999999999999974 444333 3679999999
Q ss_pred ecccccCccccccCCCCcceeEEEecceeEEEEEeHHHHHHHHhhCC-CCCCc
Q 038042 100 GEELLPRASVLQLGGLPISTRTVIAHTPVEAFVIEADDWKQLVNSFM-LPDDQ 151 (162)
Q Consensus 100 Ge~~l~~~~~~~~~~~~~~~~tv~a~~~~~l~~i~~~~~~~l~~~~p-~~~~~ 151 (162)
|+.+++.+. ++..+++|.++|+++.|++++|.+++.++| +..+.
T Consensus 113 Ge~~~~~~~--------~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~~~ 157 (161)
T 3idb_B 113 GELALMYNT--------PRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKM 157 (161)
T ss_dssp CGGGGTCCC--------CCSSEEEESSSEEEEEEEHHHHHHHHHHHHHTSCCC
T ss_pred chHHHHcCC--------CcccEEEECCCeEEEEEeHHHHHHHHHHCHHHHHHH
Confidence 998887653 788999999999999999999999999999 55443
No 8
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.89 E-value=1.9e-22 Score=141.91 Aligned_cols=128 Identities=13% Similarity=0.180 Sum_probs=107.6
Q ss_pred hHhhhhhCccccccCHHHHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeee--cCCceeeeeeeeCCCCee
Q 038042 22 PLHSLVLHQVFDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPT--TIRTTTFSFNASNDGHFC 99 (162)
Q Consensus 22 ~~~~L~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~--~~~~~~~~~~~~~~G~~~ 99 (162)
..++|+++++|..++++++..++..++.+.|++|++|+++|+.++++|+|++|.|+++.. +|+... +..+++|++|
T Consensus 10 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~G~~~ 87 (154)
T 2z69_A 10 HQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKI--LEVTNERNTF 87 (154)
T ss_dssp HHHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----C--CEEECTTEEE
T ss_pred HHHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEE--EEEccCCCee
Confidence 457899999999999999999999999999999999999999999999999999999975 344333 3679999999
Q ss_pred ecccccCccccccCCCCc-ceeEEEecceeEEEEEeHHHHHHHHhhCC-CCCCchhHHHhhh
Q 038042 100 GEELLPRASVLQLGGLPI-STRTVIAHTPVEAFVIEADDWKQLVNSFM-LPDDQLPYIFRLT 159 (162)
Q Consensus 100 Ge~~l~~~~~~~~~~~~~-~~~tv~a~~~~~l~~i~~~~~~~l~~~~p-~~~~~l~~~~~~~ 159 (162)
|+.+++.+. + +..+++|.++|+++.+++++|.+++.++| +....++...+++
T Consensus 88 G~~~~~~~~--------~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~~~~rl 141 (154)
T 2z69_A 88 AEAMMFMDT--------PNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTRL 141 (154)
T ss_dssp SGGGGGSSC--------SBCSSEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ccHhhccCC--------CCCceEEEEccceEEEEECHHHHHHHHHHChHHHHHHHHHHHHHH
Confidence 998887542 5 88999999999999999999999999999 5544444444433
No 9
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.88 E-value=1.6e-22 Score=148.13 Aligned_cols=123 Identities=14% Similarity=0.174 Sum_probs=106.8
Q ss_pred cchHhhhhhCccccccCHHHHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCee
Q 038042 20 LTPLHSLVLHQVFDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFC 99 (162)
Q Consensus 20 ~~~~~~L~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~ 99 (162)
.....+|+++|+|.+++++++..++..++.+.|++|++|+++|+.++.+|+|.+|.|+++..+.......+..+++|++|
T Consensus 35 ~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~v~~~~~~g~~~~~~~~~~G~~f 114 (187)
T 3gyd_A 35 EEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVNVIKDIPNKGIQTIAKVGAGAII 114 (187)
T ss_dssp HHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEEETTTEEEEEEEEETTCEE
T ss_pred HHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCeEEEEEccCCCee
Confidence 35577899999999999999999999999999999999999999999999999999999976421122234689999999
Q ss_pred ecccccCccccccCCCCcceeEEEecceeEEEEEeHHHHHHHHhhCC-CCCC
Q 038042 100 GEELLPRASVLQLGGLPISTRTVIAHTPVEAFVIEADDWKQLVNSFM-LPDD 150 (162)
Q Consensus 100 Ge~~l~~~~~~~~~~~~~~~~tv~a~~~~~l~~i~~~~~~~l~~~~p-~~~~ 150 (162)
|+.+++.+. ++..+++|.++|+++.+++++|.+++.++| +...
T Consensus 115 Ge~~~l~~~--------~~~~~v~A~~~~~v~~i~~~~~~~l~~~~p~~~~~ 158 (187)
T 3gyd_A 115 GEMSMIDGM--------PRSASCVASLPTDFAVLSRDALYQLLANMPKLGNK 158 (187)
T ss_dssp SHHHHHHCC--------CCSSEEEEEEEEEEEEEEHHHHHHHHHHCHHHHHH
T ss_pred eeHHHhCCC--------CeeEEEEECCCeEEEEEcHHHHHHHHHHChHHHHH
Confidence 998876542 778999999999999999999999999999 4433
No 10
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.87 E-value=7.2e-22 Score=137.44 Aligned_cols=124 Identities=15% Similarity=0.178 Sum_probs=106.7
Q ss_pred cCCcCce--eeeeccccchHhhhhhCccccccCHHHHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeeecC
Q 038042 6 KLPCGLN--IITHANTLTPLHSLVLHQVFDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTI 83 (162)
Q Consensus 6 ~lp~~~~--~~~~~~~~~~~~~L~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~ 83 (162)
++|..++ ...+ ....+|+++++|.++++++++.++..++.+.|++|++|+++|+.++++|+|++|.|++.. +|
T Consensus 7 ~~p~~~k~~~~~~----~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~-~g 81 (139)
T 3ocp_A 7 TLPFYPKSPQSKD----LIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK-EG 81 (139)
T ss_dssp CCCCCCCCHHHHH----HHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEE-TT
T ss_pred cCCCCCCCHHHHH----HHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE-CC
Confidence 5666666 2222 567899999999999999999999999999999999999999999999999999999966 55
Q ss_pred CceeeeeeeeCCCCeeecccccCccccccCCCCcceeEEEecceeEEEEEeHHHHHHHHhhCC
Q 038042 84 RTTTFSFNASNDGHFCGEELLPRASVLQLGGLPISTRTVIAHTPVEAFVIEADDWKQLVNSFM 146 (162)
Q Consensus 84 ~~~~~~~~~~~~G~~~Ge~~l~~~~~~~~~~~~~~~~tv~a~~~~~l~~i~~~~~~~l~~~~p 146 (162)
+ .+ ..+++|++||+.+++.+. ++..+++|.++|+++.|++++|.+++.++|
T Consensus 82 ~--~~--~~~~~G~~fGe~~~l~~~--------~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p 132 (139)
T 3ocp_A 82 V--KL--CTMGPGKVFGELAILYNC--------TRTATVKTLVNVKLWAIDRQCFQTIMMRTG 132 (139)
T ss_dssp E--EE--EEECTTCEESCHHHHHCC--------CCSSEEEESSCEEEEEEEHHHHHHHHTC--
T ss_pred E--EE--EEeCCCCEeccHHHHCCC--------CcceEEEECcceEEEEEcHHHHHHHHhhCh
Confidence 2 23 678999999998877542 778999999999999999999999999999
No 11
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.87 E-value=4.5e-22 Score=137.91 Aligned_cols=124 Identities=18% Similarity=0.256 Sum_probs=107.7
Q ss_pred chHhhhhhCccccccCHHHHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 21 TPLHSLVLHQVFDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 21 ~~~~~L~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
...++|+++|+|.+++++++..++..++.+.|++|++|+++|+.++++|+|.+|.|+++..+ . ..+++|++||
T Consensus 8 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~--~-----~~~~~G~~~G 80 (138)
T 1vp6_A 8 RNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN--P-----VELGPGAFFG 80 (138)
T ss_dssp HHHHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS--C-----EEECTTCEEC
T ss_pred HHHHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC--c-----ceECCCCEee
Confidence 45678999999999999999999999999999999999999999999999999999998754 1 3688999999
Q ss_pred cccccCccccccCCCCcceeEEEecceeEEEEEeHHHHHHHHhhCC-CCCCchhHHHhhh
Q 038042 101 EELLPRASVLQLGGLPISTRTVIAHTPVEAFVIEADDWKQLVNSFM-LPDDQLPYIFRLT 159 (162)
Q Consensus 101 e~~l~~~~~~~~~~~~~~~~tv~a~~~~~l~~i~~~~~~~l~~~~p-~~~~~l~~~~~~~ 159 (162)
+.+++.+. ++..+++|.++|+++.+++++|.+++.++| +....++...+++
T Consensus 81 ~~~~~~~~--------~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~r~ 132 (138)
T 1vp6_A 81 EMALISGE--------PRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALERR 132 (138)
T ss_dssp HHHHHHCC--------CCSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHC
T ss_pred ehHhccCC--------CceeEEEECCCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHhh
Confidence 98776542 677899999999999999999999999999 5544444444443
No 12
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.87 E-value=8.9e-22 Score=143.99 Aligned_cols=115 Identities=10% Similarity=0.072 Sum_probs=102.2
Q ss_pred hHhhhhhCccccccCHHHHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeee--cCCceeeeeeeeCCCCee
Q 038042 22 PLHSLVLHQVFDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPT--TIRTTTFSFNASNDGHFC 99 (162)
Q Consensus 22 ~~~~L~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~--~~~~~~~~~~~~~~G~~~ 99 (162)
...+++.+++|.++++++++.+.+.++.+.|++|++|+++|++++++|+|.+|.|+++.. +|++.. ...++||++|
T Consensus 5 ~~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~--~~~~~~g~~~ 82 (194)
T 3dn7_A 5 HTALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQT--TQFAIENWWL 82 (194)
T ss_dssp CHHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTCEE
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEE--EEEccCCcEE
Confidence 356889999999999999999999999999999999999999999999999999999976 454433 3679999999
Q ss_pred ecc-cccCccccccCCCCcceeEEEecceeEEEEEeHHHHHHHHhhCC
Q 038042 100 GEE-LLPRASVLQLGGLPISTRTVIAHTPVEAFVIEADDWKQLVNSFM 146 (162)
Q Consensus 100 Ge~-~l~~~~~~~~~~~~~~~~tv~a~~~~~l~~i~~~~~~~l~~~~p 146 (162)
|+. +++.+. ++..+++|.++|+++.+++++|.+++.++|
T Consensus 83 ge~~~~~~~~--------~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p 122 (194)
T 3dn7_A 83 SDYMAFQKQQ--------PADFYIQSVENCELLSITYTEQENLFERIP 122 (194)
T ss_dssp CCHHHHHHTC--------BCSSEEEESSCEEEEEEEHHHHHHHHHHCT
T ss_pred eehHHHhcCC--------CCceEEEEECCEEEEEEeHHHHHHHHHhCH
Confidence 986 444332 778999999999999999999999999999
No 13
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.86 E-value=1.4e-21 Score=144.94 Aligned_cols=111 Identities=14% Similarity=0.209 Sum_probs=98.5
Q ss_pred hhhCccccccCHHHHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeee--cCCceeeeeeeeCCCCeeeccc
Q 038042 26 LVLHQVFDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPT--TIRTTTFSFNASNDGHFCGEEL 103 (162)
Q Consensus 26 L~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~--~~~~~~~~~~~~~~G~~~Ge~~ 103 (162)
|+++|+|+++++++++.++..++.+.|++|++|+++|++++++|+|.+|.|+++.. +|+... ...++||++||+.+
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G~~~ 78 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERT--LALLGPGELFGEMS 78 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEE--EEEECTTCEECHHH
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEE--EEEecCCCEEeehh
Confidence 56889999999999999999999999999999999999999999999999999976 444333 37899999999987
Q ss_pred ccCccccccCCCCcceeEEEecceeEEEEEeHHHHHHHHhhCC
Q 038042 104 LPRASVLQLGGLPISTRTVIAHTPVEAFVIEADDWKQLVNSFM 146 (162)
Q Consensus 104 l~~~~~~~~~~~~~~~~tv~a~~~~~l~~i~~~~~~~l~~~~p 146 (162)
++.+. +++.+++|.++|+++.+++++|.+++.++|
T Consensus 79 ~~~~~--------~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p 113 (216)
T 4ev0_A 79 LLDEG--------ERSASAVAVEDTELLALFREDYLALIRRLP 113 (216)
T ss_dssp HHHCC--------BCSSEEEESSSEEEEEEEHHHHHHHHHHCH
T ss_pred hcCCC--------CcceEEEEcCCEEEEEEcHHHHHHHHHHCc
Confidence 76542 778999999999999999999999999999
No 14
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.86 E-value=9.7e-22 Score=136.18 Aligned_cols=126 Identities=37% Similarity=0.533 Sum_probs=102.4
Q ss_pred hHhhhhhCccccccCHHHHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeee-cCCceeeeeeeeCCCCeee
Q 038042 22 PLHSLVLHQVFDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPT-TIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 22 ~~~~L~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~-~~~~~~~~~~~~~~G~~~G 100 (162)
..++|+++|+|..+++++++.++..++.+.|++|++|+++|+.++.+|+|++|.|++... +|+...+.+..+.+|++||
T Consensus 4 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~l~~G~~fG 83 (137)
T 1wgp_A 4 GSSGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCG 83 (137)
T ss_dssp CSCSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSS
T ss_pred hHHHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEEcCCCcceeeeeeeecCCCEec
Confidence 346799999999999999999999999999999999999999999999999999997643 4444333223789999999
Q ss_pred cccc---cCccccccCCCCcceeEEEecceeEEEEEeHHHHHHHHhhCC-CCC
Q 038042 101 EELL---PRASVLQLGGLPISTRTVIAHTPVEAFVIEADDWKQLVNSFM-LPD 149 (162)
Q Consensus 101 e~~l---~~~~~~~~~~~~~~~~tv~a~~~~~l~~i~~~~~~~l~~~~p-~~~ 149 (162)
+.++ +.+. .....++++++++|.++|+++.|++++|.+++.++| +.+
T Consensus 84 e~~l~~~~~~~--~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~ 134 (137)
T 1wgp_A 84 DELLTWALDPK--SGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRSGP 134 (137)
T ss_dssp THHHHHHHCSS--CCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCCTT
T ss_pred HHHHHHHhccc--cccccccceeEEEEeEEEEEEEECHHHHHHHHHHCHhhHh
Confidence 9874 4331 000000356899999999999999999999999999 543
No 15
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.86 E-value=1.6e-21 Score=146.27 Aligned_cols=115 Identities=14% Similarity=0.239 Sum_probs=103.8
Q ss_pred hHhhhhhCccccccCHHHHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeee--cCCceeeeeeeeCCCCee
Q 038042 22 PLHSLVLHQVFDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPT--TIRTTTFSFNASNDGHFC 99 (162)
Q Consensus 22 ~~~~L~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~--~~~~~~~~~~~~~~G~~~ 99 (162)
..++|+++|+|.++++++++.++..++.+.|++|++|+++|++++++|+|.+|.|+++.. +|+... ...++||++|
T Consensus 4 ~~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~ 81 (231)
T 3e97_A 4 RLDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERV--LGDIYAPGVV 81 (231)
T ss_dssp CHHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEE--EEEEESSEEE
T ss_pred HHHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEE--EEecCCCCEE
Confidence 467899999999999999999999999999999999999999999999999999999976 344433 3689999999
Q ss_pred ecccccCccccccCCCCcceeEEEecceeEEEEEeHHHHHHHHhhCC
Q 038042 100 GEELLPRASVLQLGGLPISTRTVIAHTPVEAFVIEADDWKQLVNSFM 146 (162)
Q Consensus 100 Ge~~l~~~~~~~~~~~~~~~~tv~a~~~~~l~~i~~~~~~~l~~~~p 146 (162)
|+.+++.+. ++..+++|.++|+++.+++++|.+++.++|
T Consensus 82 G~~~~~~~~--------~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p 120 (231)
T 3e97_A 82 GETAVLAHQ--------ERSASVRALTPVRTLMLHREHFELILRRHP 120 (231)
T ss_dssp STTTTTCCC--------CCCEEEEESSCEEEEEECHHHHHHHHHHCH
T ss_pred eeHHHhCCC--------CceEEEEECCcEEEEEEeHHHHHHHHHHCH
Confidence 998887543 788999999999999999999999999999
No 16
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.86 E-value=3.5e-21 Score=143.06 Aligned_cols=114 Identities=11% Similarity=0.115 Sum_probs=100.8
Q ss_pred HhhhhhCccccccCHHHHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeee--cCCceeeeeeeeCCCCe--
Q 038042 23 LHSLVLHQVFDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPT--TIRTTTFSFNASNDGHF-- 98 (162)
Q Consensus 23 ~~~L~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~--~~~~~~~~~~~~~~G~~-- 98 (162)
.++|+++|+|.++++++++.+...++.+.|++|++|+++|++++++|+|.+|.|+++.. +|+... ...++||++
T Consensus 2 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~G~~~~ 79 (220)
T 3dv8_A 2 MSFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREIT--LYRLFDMDMCL 79 (220)
T ss_dssp ---CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEE--EEEECTTCEES
T ss_pred cchHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEEE--EEecCCCCeee
Confidence 36789999999999999999999999999999999999999999999999999999976 344333 368999999
Q ss_pred eecccccCccccccCCCCcceeEEEecceeEEEEEeHHHHHHHHhhCC
Q 038042 99 CGEELLPRASVLQLGGLPISTRTVIAHTPVEAFVIEADDWKQLVNSFM 146 (162)
Q Consensus 99 ~Ge~~l~~~~~~~~~~~~~~~~tv~a~~~~~l~~i~~~~~~~l~~~~p 146 (162)
||+.+++.+. ++..+++|.++|+++.+++++|.+++.++|
T Consensus 80 ~g~~~~~~~~--------~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p 119 (220)
T 3dv8_A 80 LSASCIMRSI--------QFEVTIEAEKDTDLWIIPAEIYKGIMKDSA 119 (220)
T ss_dssp GGGGGGCTTC--------CCCCEEEESSCEEEEEEEHHHHHHHHHHCH
T ss_pred hhHHHHhCCC--------CCceEEEEeeeeEEEEEEHHHHHHHHHHCH
Confidence 6887777543 788999999999999999999999999999
No 17
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.85 E-value=4.7e-21 Score=144.27 Aligned_cols=116 Identities=15% Similarity=0.182 Sum_probs=104.3
Q ss_pred chHhhhhhCccccccCHHHHHHHHhh--ceeeeecCCCEEEecCCccCeEEEEEeeEEEEeee--cCCceeeeeeeeCCC
Q 038042 21 TPLHSLVLHQVFDRIDEHFLNAMLDL--LKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPT--TIRTTTFSFNASNDG 96 (162)
Q Consensus 21 ~~~~~L~~~~lF~~l~~~~l~~l~~~--~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~--~~~~~~~~~~~~~~G 96 (162)
....+++++|+|.++++++++.++.. ++.+.|++|++|+++|+.++.+|+|.+|.|+++.. +|+...+ ..++||
T Consensus 15 ~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~l--~~~~~G 92 (232)
T 1zyb_A 15 TMFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVI--EQIEAP 92 (232)
T ss_dssp HHHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEEE--EEEESS
T ss_pred HHHHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEEE--EEccCC
Confidence 45677999999999999999999998 99999999999999999999999999999999875 4554444 678999
Q ss_pred CeeecccccCccccccCCCCc-ceeEEEecceeEEEEEeHHHHHHHHhhCC
Q 038042 97 HFCGEELLPRASVLQLGGLPI-STRTVIAHTPVEAFVIEADDWKQLVNSFM 146 (162)
Q Consensus 97 ~~~Ge~~l~~~~~~~~~~~~~-~~~tv~a~~~~~l~~i~~~~~~~l~~~~p 146 (162)
++||+.+++.+. + +..+++|.++|+++.+++++|.+++.++|
T Consensus 93 ~~fG~~~~~~~~--------~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p 135 (232)
T 1zyb_A 93 YLIEPQSLFGMN--------TNYASSYVAHTEVHTVCISKAFVLSDLFRYD 135 (232)
T ss_dssp EEECGGGGSSSC--------CBCSSEEEESSCEEEEEEEHHHHHHTGGGSH
T ss_pred CeeeehHHhCCC--------CCCceEEEEccceEEEEEEHHHHHHHhccCH
Confidence 999998887542 4 78999999999999999999999999999
No 18
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.85 E-value=2.2e-21 Score=145.98 Aligned_cols=116 Identities=15% Similarity=0.119 Sum_probs=104.7
Q ss_pred chHhhhhhCccccccCHHHHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeee--cCCceeeeeeeeCCCCe
Q 038042 21 TPLHSLVLHQVFDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPT--TIRTTTFSFNASNDGHF 98 (162)
Q Consensus 21 ~~~~~L~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~--~~~~~~~~~~~~~~G~~ 98 (162)
....+|+++|+|.++++++++.++..++.+.|++|++|+++|++++++|+|.+|.|+++.. +|+... +..++||++
T Consensus 8 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~G~~ 85 (237)
T 3fx3_A 8 AQKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAV--VSVFTRGES 85 (237)
T ss_dssp HHHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTEE
T ss_pred HHHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEE--EEEeCCCCE
Confidence 3567899999999999999999999999999999999999999999999999999999975 444333 367999999
Q ss_pred eecccccCccccccCCCCcceeEEEecceeEEEEEeHHHHHHHHhhCC
Q 038042 99 CGEELLPRASVLQLGGLPISTRTVIAHTPVEAFVIEADDWKQLVNSFM 146 (162)
Q Consensus 99 ~Ge~~l~~~~~~~~~~~~~~~~tv~a~~~~~l~~i~~~~~~~l~~~~p 146 (162)
||+.+++.+. ++..+++|.++|+++.+++++|.+++.++|
T Consensus 86 ~G~~~~~~~~--------~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p 125 (237)
T 3fx3_A 86 FGEAVALRNT--------PYPVSAEAVTPCEVMHIPSPVFVSLMRRDP 125 (237)
T ss_dssp ECHHHHHHTC--------CCSSEEEESSSEEEEEEEHHHHHHHHHHCH
T ss_pred echHHHhcCC--------CCCceEEECCceEEEEEcHHHHHHHHHHCH
Confidence 9998877432 778999999999999999999999999999
No 19
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.85 E-value=1.7e-21 Score=145.45 Aligned_cols=115 Identities=13% Similarity=0.209 Sum_probs=104.2
Q ss_pred hHhhhhhCccccccCHHHHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeee--cCCceeeeeeeeCCCCee
Q 038042 22 PLHSLVLHQVFDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPT--TIRTTTFSFNASNDGHFC 99 (162)
Q Consensus 22 ~~~~L~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~--~~~~~~~~~~~~~~G~~~ 99 (162)
..++|+++|+|.++++++++.+...++.+.|++|++|+++|++++++|+|.+|.|+++.. +|+...+ ..++||++|
T Consensus 7 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~--~~~~~g~~~ 84 (227)
T 3dkw_A 7 HQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKIL--EVTNERNTF 84 (227)
T ss_dssp SHHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBCC--CEECTTEEE
T ss_pred HHHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEEE--EEcCCCCEe
Confidence 568899999999999999999999999999999999999999999999999999999975 4444333 678999999
Q ss_pred ecccccCccccccCCCCc-ceeEEEecceeEEEEEeHHHHHHHHhhCC
Q 038042 100 GEELLPRASVLQLGGLPI-STRTVIAHTPVEAFVIEADDWKQLVNSFM 146 (162)
Q Consensus 100 Ge~~l~~~~~~~~~~~~~-~~~tv~a~~~~~l~~i~~~~~~~l~~~~p 146 (162)
|+.+++.+. + +..+++|.++|+++.+++++|.+++.++|
T Consensus 85 G~~~~~~~~--------~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p 124 (227)
T 3dkw_A 85 AEAMMFMDT--------PNYVATAQAVVPSQLFRFSNKAYLRQLQDNT 124 (227)
T ss_dssp SCTTTTTTC--------SBCSSCEEESSCCEEEEEESHHHHHHHSSCT
T ss_pred eeHHhcCCC--------CCCceEEEEcCcEEEEEEeHHHHHHHHHHCH
Confidence 998877542 5 78999999999999999999999999999
No 20
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.85 E-value=6.7e-21 Score=134.89 Aligned_cols=113 Identities=16% Similarity=0.244 Sum_probs=102.6
Q ss_pred chHhhhhhCccccccCHHHHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 21 TPLHSLVLHQVFDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 21 ~~~~~L~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
....+|+++++|.+++++++..++..++.+.|++|++|+++|+.++++|+|++|.|+++. +|+ .+ ..+++|++||
T Consensus 35 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~-~~~--~~--~~~~~G~~fG 109 (154)
T 3pna_A 35 ALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV-NNE--WA--TSVGEGGSFG 109 (154)
T ss_dssp HHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEE-TTE--EE--EEECTTCEEC
T ss_pred HHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEE-CCE--EE--EEecCCCEee
Confidence 456789999999999999999999999999999999999999999999999999999998 442 33 5789999999
Q ss_pred cccccCccccccCCCCcceeEEEecceeEEEEEeHHHHHHHHhhCC
Q 038042 101 EELLPRASVLQLGGLPISTRTVIAHTPVEAFVIEADDWKQLVNSFM 146 (162)
Q Consensus 101 e~~l~~~~~~~~~~~~~~~~tv~a~~~~~l~~i~~~~~~~l~~~~p 146 (162)
+.+++.+. ++.++++|.++|+++.|++++|.+++.++|
T Consensus 110 e~~~~~~~--------~~~~~v~A~~~~~~~~i~~~~~~~ll~~~~ 147 (154)
T 3pna_A 110 ELALIYGT--------PRAATVKAKTNVKLWGIDRDSYRRILMGST 147 (154)
T ss_dssp CHHHHHCC--------CCSSEEEESSCEEEEEEEHHHHHHHTHHHH
T ss_pred ehHhhcCC--------CcceEEEECcceEEEEEeHHHHHHHHHhCh
Confidence 98887543 778999999999999999999999999987
No 21
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.85 E-value=1.5e-21 Score=145.96 Aligned_cols=115 Identities=16% Similarity=0.215 Sum_probs=103.9
Q ss_pred hHhhhhhCccccccCHHHHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeee--cCCceeeeeeeeCCCCee
Q 038042 22 PLHSLVLHQVFDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPT--TIRTTTFSFNASNDGHFC 99 (162)
Q Consensus 22 ~~~~L~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~--~~~~~~~~~~~~~~G~~~ 99 (162)
..++|+++|+|.++++++++.++..++.+.|++|++|+++|++++++|+|.+|.|+++.. +|+... +..++||++|
T Consensus 4 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~G~~~ 81 (227)
T 3d0s_A 4 MDEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENL--LTIMGPSDMF 81 (227)
T ss_dssp CHHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEE--EEEECTTCEE
T ss_pred HHHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEE--EEEecCCCEE
Confidence 356899999999999999999999999999999999999999999999999999999976 344433 3689999999
Q ss_pred ecccccCccccccCCCCcceeEEEecceeEEEEEeHHHHHHHHhhCC
Q 038042 100 GEELLPRASVLQLGGLPISTRTVIAHTPVEAFVIEADDWKQLVNSFM 146 (162)
Q Consensus 100 Ge~~l~~~~~~~~~~~~~~~~tv~a~~~~~l~~i~~~~~~~l~~~~p 146 (162)
|+.+++.+. ++..+++|.++|+++.+++++|.+++.++|
T Consensus 82 G~~~~~~~~--------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p 120 (227)
T 3d0s_A 82 GELSIFDPG--------PRTSSATTITEVRAVSMDRDALRSWIADRP 120 (227)
T ss_dssp SCHHHHSCS--------CCSSEEEESSCEEEEEEEHHHHHHTTSSCH
T ss_pred eeHHHcCCC--------CceeEEEEcccEEEEEEeHHHHHHHHHHCh
Confidence 998877542 788999999999999999999999999998
No 22
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.85 E-value=1e-20 Score=141.47 Aligned_cols=116 Identities=16% Similarity=0.149 Sum_probs=91.7
Q ss_pred chHhhhhhCccccccCHHHHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeee--cCCceeeeeeeeCCCCe
Q 038042 21 TPLHSLVLHQVFDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPT--TIRTTTFSFNASNDGHF 98 (162)
Q Consensus 21 ~~~~~L~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~--~~~~~~~~~~~~~~G~~ 98 (162)
.....+++.++|.++++++++.++..++.+.|++|++|+++|++++++|+|.+|.|+++.. +|+... ...++||++
T Consensus 8 ~~~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~g~~ 85 (230)
T 3iwz_A 8 VVTTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELV--LGYFGSGEF 85 (230)
T ss_dssp --------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEE--EEEECTTCE
T ss_pred eehhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEE--EEEecCCCE
Confidence 3456799999999999999999999999999999999999999999999999999999976 344433 368999999
Q ss_pred eecccccCccccccCCCCcceeEEEecceeEEEEEeHHHHHHHHhhC
Q 038042 99 CGEELLPRASVLQLGGLPISTRTVIAHTPVEAFVIEADDWKQLVNSF 145 (162)
Q Consensus 99 ~Ge~~l~~~~~~~~~~~~~~~~tv~a~~~~~l~~i~~~~~~~l~~~~ 145 (162)
||+.+++.+. +++..+++|.++|+++.+++++|.+++.++
T Consensus 86 ~G~~~~~~~~-------~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~ 125 (230)
T 3iwz_A 86 VGEMGLFIES-------DTREVILRTRTQCELAEISYERLQQLFQTS 125 (230)
T ss_dssp ESCGGGTSCC-------SBCCSEEEESSCEEEEEEEHHHHHHHHHTT
T ss_pred EEehhhhcCC-------CCceeEEEEcCcEEEEEEeHHHHHHHHHHh
Confidence 9998887541 267889999999999999999999999999
No 23
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.84 E-value=1.2e-20 Score=148.86 Aligned_cols=120 Identities=16% Similarity=0.178 Sum_probs=105.2
Q ss_pred hHhhhhhCccccccCHHHHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeeecC-CceeeeeeeeCCCCeee
Q 038042 22 PLHSLVLHQVFDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTI-RTTTFSFNASNDGHFCG 100 (162)
Q Consensus 22 ~~~~L~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~-~~~~~~~~~~~~G~~~G 100 (162)
..++|+++|+|++++++++..++..++.+.|++|++|+++|++++++|+|.+|.|+++..+. .... +..+++|++||
T Consensus 11 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~--~~~~~~G~~fG 88 (333)
T 4ava_A 11 RVEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVAI--IARALPGMIVG 88 (333)
T ss_dssp CHHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCEE--EEEECTTCEES
T ss_pred hHHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcEE--EEEecCCCEee
Confidence 45789999999999999999999999999999999999999999999999999999997643 2223 36899999999
Q ss_pred cccccCccccccCCCCcceeEEEecceeEEEEEeHHHHHHHHhhCC-CCCCch
Q 038042 101 EELLPRASVLQLGGLPISTRTVIAHTPVEAFVIEADDWKQLVNSFM-LPDDQL 152 (162)
Q Consensus 101 e~~l~~~~~~~~~~~~~~~~tv~a~~~~~l~~i~~~~~~~l~~~~p-~~~~~l 152 (162)
+.+++.+. +++++++|.++|+++.|++++|.+++ ++| +....+
T Consensus 89 e~~l~~~~--------~~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~~~~~~~ 132 (333)
T 4ava_A 89 EIALLRDS--------PRSATVTTIEPLTGWTGGRGAFATMV-HIPGVGERLL 132 (333)
T ss_dssp HHHHHHTC--------BCSSEEEESSCEEEEEECHHHHHHHH-HSTTHHHHHH
T ss_pred HHHhcCCC--------CceEEEEEecCEEEEEEcHHHHHHHH-hChHHHHHHH
Confidence 98887543 78899999999999999999999999 899 443333
No 24
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.84 E-value=1.4e-20 Score=130.22 Aligned_cols=113 Identities=11% Similarity=0.133 Sum_probs=101.7
Q ss_pred chHhhhhhCccccccCHHHHHHHHhhceeeeec-CCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCee
Q 038042 21 TPLHSLVLHQVFDRIDEHFLNAMLDLLKLVPYT-ERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFC 99 (162)
Q Consensus 21 ~~~~~L~~~~lF~~l~~~~l~~l~~~~~~~~~~-~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~ 99 (162)
....+|+++++|..++++++..++..++.+.|+ +|++|+++|+.++.+|+|++|.|+++..+|+. ..+++|++|
T Consensus 13 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~g~~-----~~l~~G~~f 87 (134)
T 2d93_A 13 QLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISHPDGKV-----ENLFMGNSF 87 (134)
T ss_dssp HHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEECSSSCE-----EEECTTCEE
T ss_pred HHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEcCCCcE-----EEecCCCcc
Confidence 345789999999999999999999999999999 99999999999999999999999999766643 347899999
Q ss_pred ecccccCccccccCCCCcceeEE-EecceeEEEEEeHHHHHHHHhhCC
Q 038042 100 GEELLPRASVLQLGGLPISTRTV-IAHTPVEAFVIEADDWKQLVNSFM 146 (162)
Q Consensus 100 Ge~~l~~~~~~~~~~~~~~~~tv-~a~~~~~l~~i~~~~~~~l~~~~p 146 (162)
|+.+++.+. ++..++ +|.++|+++.|++++|.+++.+.+
T Consensus 88 G~~~~~~~~--------~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~ 127 (134)
T 2d93_A 88 GITPTLDKQ--------YMHGIVRTKVDDCQFVCIAQQDYWRILNHVE 127 (134)
T ss_dssp SCCSSSCCE--------ECCSEEEESSSSEEEEEEEHHHHHHHSSCCS
T ss_pred ChhHhcCCC--------cceeEEEEEecceEEEEEeHHHHHHHHHHHH
Confidence 998887653 666788 999999999999999999999877
No 25
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.83 E-value=3.7e-20 Score=143.93 Aligned_cols=129 Identities=20% Similarity=0.343 Sum_probs=111.9
Q ss_pred chHhhhhhCccccccCHHHHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeeec---CCceeeeeeeeCCCC
Q 038042 21 TPLHSLVLHQVFDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTT---IRTTTFSFNASNDGH 97 (162)
Q Consensus 21 ~~~~~L~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~---~~~~~~~~~~~~~G~ 97 (162)
....++++.++|..++++++..++..++.+.|++|++|+++|+.++.+|+|.+|.|+++..+ |+... +..+++|+
T Consensus 154 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~--~~~l~~G~ 231 (299)
T 3shr_A 154 EYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVF--LRTLGKGD 231 (299)
T ss_dssp HHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEE--EEEEETTC
T ss_pred HHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceE--EEEcCCCC
Confidence 35567889999999999999999999999999999999999999999999999999999764 33333 36899999
Q ss_pred eeecccccCccccccCCCCcceeEEEecceeEEEEEeHHHHHHHHhhCC-CCCCchhHHHhhh
Q 038042 98 FCGEELLPRASVLQLGGLPISTRTVIAHTPVEAFVIEADDWKQLVNSFM-LPDDQLPYIFRLT 159 (162)
Q Consensus 98 ~~Ge~~l~~~~~~~~~~~~~~~~tv~a~~~~~l~~i~~~~~~~l~~~~p-~~~~~l~~~~~~~ 159 (162)
+||+.+++.+. ++.++++|.++|+++.|++++|.+++.++| +..+.++...+++
T Consensus 232 ~fGe~~ll~~~--------~~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~r~ 286 (299)
T 3shr_A 232 WFGEKALQGED--------VRTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKAYEDAEAKA 286 (299)
T ss_dssp EECGGGGSSSE--------ECSSEEEESSSEEEEEEEHHHHHHHHTTCCCCCHHHHHHHHHHH
T ss_pred EeChHHHhCCC--------CcceEEEECCCEEEEEEeHHHHHHHHccHHHHHHHHHHHHhhhh
Confidence 99999988653 788999999999999999999999999999 6655555544443
No 26
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.83 E-value=7.4e-20 Score=142.24 Aligned_cols=128 Identities=13% Similarity=0.154 Sum_probs=110.4
Q ss_pred cccccCCcCce--eeeeccccchHhhhhhCccccccCHHHHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEe
Q 038042 2 GCLFKLPCGLN--IITHANTLTPLHSLVLHQVFDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSE 79 (162)
Q Consensus 2 ~~~~~lp~~~~--~~~~~~~~~~~~~L~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~ 79 (162)
+...++|...+ ...+ ....+|+++++|.+++++++..++..++.+.|++|++|+++|+.++.+|+|++|.|++.
T Consensus 19 ~~~~~~p~~~rs~~~~~----~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~ 94 (299)
T 3shr_A 19 GSMQAFRKFTKSERSKD----LIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVT 94 (299)
T ss_dssp ---CCCCCCCCCHHHHH----HHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEE
T ss_pred cccCCCCCcCCCHHHHH----HHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEE
Confidence 34567787777 3333 56789999999999999999999999999999999999999999999999999999996
Q ss_pred eecCCceeeeeeeeCCCCeeecccccCccccccCCCCcceeEEEecceeEEEEEeHHHHHHHHhhCC
Q 038042 80 PTTIRTTTFSFNASNDGHFCGEELLPRASVLQLGGLPISTRTVIAHTPVEAFVIEADDWKQLVNSFM 146 (162)
Q Consensus 80 ~~~~~~~~~~~~~~~~G~~~Ge~~l~~~~~~~~~~~~~~~~tv~a~~~~~l~~i~~~~~~~l~~~~p 146 (162)
. +|+ .+ ..+.+|++||+.+++.+. ++.++++|.++|+++.|++++|.+++.++|
T Consensus 95 ~-~g~--~~--~~~~~G~~fGe~~ll~~~--------~~~~tv~a~~~~~l~~i~~~~~~~i~~~~~ 148 (299)
T 3shr_A 95 K-EGV--KL--CTMGPGKVFGELAILYNC--------TRTATVKTLVNVKLWAIDRQCFQTIMMRTG 148 (299)
T ss_dssp E-TTE--EE--EEECTTCEESCSGGGTTT--------BCCSEEEESSCEEEEEECHHHHHHHHHHHH
T ss_pred E-CCE--EE--EEeCCCCeeeHhHHhcCC--------CCCcEEEEcCCeEEEEEcHHHHHHHhhHhH
Confidence 5 442 23 679999999999888653 788999999999999999999999999887
No 27
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.82 E-value=1.5e-20 Score=141.02 Aligned_cols=109 Identities=18% Similarity=0.222 Sum_probs=97.2
Q ss_pred hCccccccCHHHHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeee--cCCceeeeeeeeCCCCeeeccccc
Q 038042 28 LHQVFDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPT--TIRTTTFSFNASNDGHFCGEELLP 105 (162)
Q Consensus 28 ~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~--~~~~~~~~~~~~~~G~~~Ge~~l~ 105 (162)
.+|+|.++++++++.++..++.+.|++|++|+++|++++++|+|.+|.|+++.. +|+...+ ..++||++||+.+++
T Consensus 14 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~--~~~~~G~~~G~~~~~ 91 (232)
T 2gau_A 14 LRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHIS--RIVKPGQFFGMRPYF 91 (232)
T ss_dssp SHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCEE--EEECTTCEESHHHHH
T ss_pred ccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEE--EEeCCCCEeeeehhh
Confidence 679999999999999999999999999999999999999999999999999975 4544343 679999999998776
Q ss_pred CccccccCCCCcceeEEEecceeEEEEEeHHHHHHHHhhCC
Q 038042 106 RASVLQLGGLPISTRTVIAHTPVEAFVIEADDWKQLVNSFM 146 (162)
Q Consensus 106 ~~~~~~~~~~~~~~~tv~a~~~~~l~~i~~~~~~~l~~~~p 146 (162)
.+. ++..+++|.++|+++.+++++|.+++.++|
T Consensus 92 ~~~--------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p 124 (232)
T 2gau_A 92 AEE--------TCSSTAIAVENSKVLAIPVEAIEALLKGNT 124 (232)
T ss_dssp HTS--------CCSSEEEESSCEEEEEEEHHHHHHHHHHCH
T ss_pred CCC--------CcceEEEEecceEEEEEEHHHHHHHHHHCH
Confidence 542 678999999999999999999999999999
No 28
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.5e-19 Score=136.06 Aligned_cols=113 Identities=14% Similarity=0.195 Sum_probs=102.9
Q ss_pred chHhhhhhCccccccCHHHHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 21 TPLHSLVLHQVFDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 21 ~~~~~L~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
...++|+++++|.+++++++..++..++.+.|++|++|+++|++++++|+|++|.|+++. +++. + ..+++|++||
T Consensus 4 ~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~-~~~~--~--~~~~~g~~fG 78 (246)
T 3of1_A 4 RLEKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYV-NDNK--V--NSSGPGSSFG 78 (246)
T ss_dssp HHHHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEES-TTSC--C--EEECTTCEEC
T ss_pred HHHHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEE-CCEE--E--EecCCCCeee
Confidence 456789999999999999999999999999999999999999999999999999999987 4432 2 5789999999
Q ss_pred cccccCccccccCCCCcceeEEEecceeEEEEEeHHHHHHHHhhCC
Q 038042 101 EELLPRASVLQLGGLPISTRTVIAHTPVEAFVIEADDWKQLVNSFM 146 (162)
Q Consensus 101 e~~l~~~~~~~~~~~~~~~~tv~a~~~~~l~~i~~~~~~~l~~~~p 146 (162)
+.+++.+. ++.+++.|.++|+++.+++++|.+++.++|
T Consensus 79 e~~l~~~~--------~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~ 116 (246)
T 3of1_A 79 ELALMYNS--------PRAATVVATSDCLLWALDRLTFRKILLGSS 116 (246)
T ss_dssp HHHHHHTC--------CCSSEEEESSCEEEEEEEHHHHHHTTTTTT
T ss_pred hhHHhcCC--------CCCcEEEECCCeEEEEEEhHHHHHHHHHhH
Confidence 98887543 788999999999999999999999999988
No 29
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.81 E-value=3.7e-19 Score=131.23 Aligned_cols=108 Identities=22% Similarity=0.272 Sum_probs=92.6
Q ss_pred ccccccCHHHHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeee--cCCceeeeeeeeCCCCeeecccccCc
Q 038042 30 QVFDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPT--TIRTTTFSFNASNDGHFCGEELLPRA 107 (162)
Q Consensus 30 ~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~--~~~~~~~~~~~~~~G~~~Ge~~l~~~ 107 (162)
+++..+++++++.++..++.+.|++|++|+++|++++++|+|.+|.|+++.. +|+... ...++||++||+.+++.+
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G~~~~~~~ 79 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMI--LSYLNQGDFIGELGLFEE 79 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEE--EEEEETTCEESCTTTTST
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEeeeHHHhcC
Confidence 4678899999999999999999999999999999999999999999999976 344333 367999999999888754
Q ss_pred cccccCCCCcceeEEEecceeEEEEEeHHHHHHHHhhCC
Q 038042 108 SVLQLGGLPISTRTVIAHTPVEAFVIEADDWKQLVNSFM 146 (162)
Q Consensus 108 ~~~~~~~~~~~~~tv~a~~~~~l~~i~~~~~~~l~~~~p 146 (162)
. +++..+++|.++|+++.+++++|.+++.++|
T Consensus 80 ~-------~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p 111 (210)
T 3ryp_A 80 G-------QERSAWVRAKTACEVAEISYKKFRQLIQVNP 111 (210)
T ss_dssp T-------CBCSSEEEESSCEEEEEEEHHHHHHHHHHCT
T ss_pred C-------CCceEEEEECCcEEEEEEcHHHHHHHHHHCh
Confidence 1 2578899999999999999999999999999
No 30
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.80 E-value=7e-19 Score=143.65 Aligned_cols=116 Identities=13% Similarity=0.124 Sum_probs=105.3
Q ss_pred chHhhhhhCccccccCHHHHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeee-cCCceeeeeeeeCCCCee
Q 038042 21 TPLHSLVLHQVFDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPT-TIRTTTFSFNASNDGHFC 99 (162)
Q Consensus 21 ~~~~~L~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~-~~~~~~~~~~~~~~G~~~ 99 (162)
....+|+++++|++|+++++..|+..+..+.|++|++|+++|+.++++|+|++|.|+++.. +|+...+ ..+.+|++|
T Consensus 142 ~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~~~~G~~~~v--~~l~~G~~f 219 (416)
T 3tnp_B 142 RLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCV--GNYDNRGSF 219 (416)
T ss_dssp HHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEEECSSCEEEE--EEEESCCEE
T ss_pred HHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEEecCCCEEEE--EEecCCCEE
Confidence 4567899999999999999999999999999999999999999999999999999999974 4544333 679999999
Q ss_pred ecccccCccccccCCCCcceeEEEecceeEEEEEeHHHHHHHHhhCC
Q 038042 100 GEELLPRASVLQLGGLPISTRTVIAHTPVEAFVIEADDWKQLVNSFM 146 (162)
Q Consensus 100 Ge~~l~~~~~~~~~~~~~~~~tv~a~~~~~l~~i~~~~~~~l~~~~p 146 (162)
|+.+++.+. ++.++++|.++|+++.|++++|.+++.++|
T Consensus 220 Ge~all~~~--------pr~atv~A~~d~~l~~i~r~~f~~ll~~~~ 258 (416)
T 3tnp_B 220 GELALMYNT--------PKAATITATSPGALWGLDRVTFRRIIVKNN 258 (416)
T ss_dssp CGGGGTSCC--------CCSSEEEESSSEEEEEEEHHHHHHHHHHHH
T ss_pred eeHHHhcCC--------CcccEEEEccCeEEEEEeehhhhhhhhcch
Confidence 999988653 788999999999999999999999999987
No 31
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.80 E-value=4e-19 Score=137.33 Aligned_cols=113 Identities=16% Similarity=0.244 Sum_probs=103.1
Q ss_pred chHhhhhhCccccccCHHHHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 21 TPLHSLVLHQVFDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 21 ~~~~~L~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
....+|+++++|.+++++++..++..++.+.|++|++|+++|+.++.+|+|++|.|+++. +|+ .+ ..+.+|++||
T Consensus 36 ~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~-~g~--~~--~~l~~G~~fG 110 (291)
T 2qcs_B 36 ALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV-NNE--WA--TSVGEGGSFG 110 (291)
T ss_dssp HHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEE-TTE--EE--EEECTTCEEC
T ss_pred HHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE-CCe--EE--EEcCCCCccc
Confidence 456789999999999999999999999999999999999999999999999999999998 552 23 6789999999
Q ss_pred cccccCccccccCCCCcceeEEEecceeEEEEEeHHHHHHHHhhCC
Q 038042 101 EELLPRASVLQLGGLPISTRTVIAHTPVEAFVIEADDWKQLVNSFM 146 (162)
Q Consensus 101 e~~l~~~~~~~~~~~~~~~~tv~a~~~~~l~~i~~~~~~~l~~~~p 146 (162)
+.+++.+. ++.+++.|.++|+++.+++++|.+++.++|
T Consensus 111 e~~l~~~~--------~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~ 148 (291)
T 2qcs_B 111 ELALIYGT--------PRAATVKAKTNVKLWGIDRDSYRRILMGST 148 (291)
T ss_dssp GGGGTCCC--------BCSSEEEESSCEEEEEEEHHHHHHHHHHHH
T ss_pred hHHHhcCC--------CCceEEEECCCEEEEEEEhHHHHHHHhhhH
Confidence 98887653 788999999999999999999999999887
No 32
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.80 E-value=1.2e-18 Score=134.71 Aligned_cols=124 Identities=14% Similarity=0.202 Sum_probs=107.2
Q ss_pred hHhhhhhCccccccCHHHHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeeec--CCceeeeeeeeCCCCee
Q 038042 22 PLHSLVLHQVFDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTT--IRTTTFSFNASNDGHFC 99 (162)
Q Consensus 22 ~~~~L~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~--~~~~~~~~~~~~~G~~~ 99 (162)
...+++++++|..++++++..++..++.+.|++|+.|+++|+.++.+|+|.+|.|+++..+ |+. ...+..+++|++|
T Consensus 155 ~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~-~~~~~~l~~G~~f 233 (291)
T 2qcs_B 155 YEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEE-FVEVGRLGPSDYF 233 (291)
T ss_dssp HHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSC-EEEEEEECTTCEE
T ss_pred HHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCc-cEEEEEeCCCCEe
Confidence 3456888999999999999999999999999999999999999999999999999998653 322 2234789999999
Q ss_pred ecccccCccccccCCCCcceeEEEecceeEEEEEeHHHHHHHHhhCC-CCCCchhH
Q 038042 100 GEELLPRASVLQLGGLPISTRTVIAHTPVEAFVIEADDWKQLVNSFM-LPDDQLPY 154 (162)
Q Consensus 100 Ge~~l~~~~~~~~~~~~~~~~tv~a~~~~~l~~i~~~~~~~l~~~~p-~~~~~l~~ 154 (162)
||.+++.+. ++++++.|.++|+++.|++++|.+++.++| +..+.++.
T Consensus 234 Ge~~ll~~~--------~~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~~~~ 281 (291)
T 2qcs_B 234 GEIALLMNR--------PKAATVVARGPLKCVKLDRPRFERVLGPCSDILKRNIQQ 281 (291)
T ss_dssp CSGGGTCCC--------CCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTTSHHH
T ss_pred cHHHHcCCC--------CcceEEEECCcEEEEEEcHHHHHHHhccHHHHHHHHHHH
Confidence 999888653 788999999999999999999999999999 55555544
No 33
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.79 E-value=1.7e-19 Score=134.29 Aligned_cols=106 Identities=11% Similarity=0.203 Sum_probs=95.6
Q ss_pred hhhhhCccccccCHHHHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeee-cCCceeeeeeeeCCCCeeecc
Q 038042 24 HSLVLHQVFDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPT-TIRTTTFSFNASNDGHFCGEE 102 (162)
Q Consensus 24 ~~L~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~-~~~~~~~~~~~~~~G~~~Ge~ 102 (162)
.+|+++|+|.+++++++..++..++.+.|++|++|+++|+.++++|+|.+|.|+++.. +|+...+ ..++||++||+
T Consensus 4 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~~--~~~~~G~~~G~- 80 (220)
T 2fmy_A 4 MRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVYLAYEDKEFTL--AILEAGDIFCT- 80 (220)
T ss_dssp TCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEEEECSSCEEEE--EEEETTCEEES-
T ss_pred hhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEEE--EEcCCCCEeCC-
Confidence 5788999999999999999999999999999999999999999999999999999633 4554333 67999999997
Q ss_pred cccCccccccCCCCcceeEEEecceeEEEEEeHHHHHHHHhhCC
Q 038042 103 LLPRASVLQLGGLPISTRTVIAHTPVEAFVIEADDWKQLVNSFM 146 (162)
Q Consensus 103 ~l~~~~~~~~~~~~~~~~tv~a~~~~~l~~i~~~~~~~l~~~~p 146 (162)
++..+++|.++|+++.+++++|.+++.++|
T Consensus 81 --------------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p 110 (220)
T 2fmy_A 81 --------------HTRAFIQAMEDTTILYTDIRNFQNIVVEFP 110 (220)
T ss_dssp --------------CSSSEEEESSSEEEEEEEHHHHHHHHHHCT
T ss_pred --------------ccceEEEEcCcEEEEEEeHHHHHHHHHHCH
Confidence 344789999999999999999999999999
No 34
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.79 E-value=5.5e-19 Score=132.96 Aligned_cols=113 Identities=17% Similarity=0.174 Sum_probs=102.2
Q ss_pred hHhhhhhCccccccCHHHHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeeec
Q 038042 22 PLHSLVLHQVFDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCGE 101 (162)
Q Consensus 22 ~~~~L~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~Ge 101 (162)
...++++.++|..++++++..++..++.+.|++|+.|+++|+.++.+|+|.+|.++++..+.. . +..+++|++|||
T Consensus 123 ~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~~--~--~~~l~~g~~fGe 198 (246)
T 3of1_A 123 YDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQG--V--INKLKDHDYFGE 198 (246)
T ss_dssp SHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTTE--E--EEEEETTCEECH
T ss_pred HHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCCc--e--EEEcCCCCcccH
Confidence 346788999999999999999999999999999999999999999999999999999986442 2 367999999999
Q ss_pred ccccCccccccCCCCcceeEEEecceeEEEEEeHHHHHHHHhhCC
Q 038042 102 ELLPRASVLQLGGLPISTRTVIAHTPVEAFVIEADDWKQLVNSFM 146 (162)
Q Consensus 102 ~~l~~~~~~~~~~~~~~~~tv~a~~~~~l~~i~~~~~~~l~~~~p 146 (162)
.+++.+. ++.+++.|.++|+++.|++++|.+++..+|
T Consensus 199 ~~~~~~~--------~~~~~v~a~~~~~~~~i~~~~f~~ll~~~~ 235 (246)
T 3of1_A 199 VALLNDL--------PRQATVTATKRTKVATLGKSGFQRLLGPAV 235 (246)
T ss_dssp HHHHHTC--------BCSSEEEESSCEEEEEEEHHHHHHHCTTHH
T ss_pred HHHhCCC--------CcccEEEECCCEEEEEEeHHHHHHHhccHH
Confidence 9887543 788999999999999999999999999887
No 35
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.79 E-value=6.3e-19 Score=143.90 Aligned_cols=115 Identities=11% Similarity=0.188 Sum_probs=102.1
Q ss_pred hHhhhhhCccccccCHHHHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeeec--------CCceeeeeeee
Q 038042 22 PLHSLVLHQVFDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTT--------IRTTTFSFNAS 93 (162)
Q Consensus 22 ~~~~L~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~--------~~~~~~~~~~~ 93 (162)
+..+++++++|..++++++..++..+..+.|++|++|+++|+.++.+|+|.+|.|+++..+ |+... +..+
T Consensus 265 ~~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~--l~~l 342 (416)
T 3tnp_B 265 YESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVE--IARC 342 (416)
T ss_dssp SSSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CE--EEEE
T ss_pred HHHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeE--EEEe
Confidence 4457888999999999999999999999999999999999999999999999999999653 32223 4789
Q ss_pred CCCCeeecccccCccccccCCCCcceeEEEecceeEEEEEeHHHHHHHHhhCC
Q 038042 94 NDGHFCGEELLPRASVLQLGGLPISTRTVIAHTPVEAFVIEADDWKQLVNSFM 146 (162)
Q Consensus 94 ~~G~~~Ge~~l~~~~~~~~~~~~~~~~tv~a~~~~~l~~i~~~~~~~l~~~~p 146 (162)
++|++||+.+++.+. ++.++++|.++|+++.|++++|.+++..+|
T Consensus 343 ~~G~~fGE~all~~~--------~r~~tv~A~~~~~ll~I~~~~f~~ll~~~p 387 (416)
T 3tnp_B 343 FRGQYFGELALVTNK--------PRAASAHAIGTVKCLAMDVQAFERLLGPCM 387 (416)
T ss_dssp CTTCEESGGGGTCCS--------CCSSEEEEEEEEEEEEEEHHHHHHHHCCHH
T ss_pred CCCCEecHHHHhCCC--------CceeEEEEcCCeEEEEEEHHHHHHHhcchH
Confidence 999999999998653 788999999999999999999999999998
No 36
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.79 E-value=1.4e-18 Score=142.80 Aligned_cols=117 Identities=14% Similarity=0.184 Sum_probs=103.5
Q ss_pred chHhhhhhCccccccCHHHHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeee--cCCceeeeeeeeCCCCe
Q 038042 21 TPLHSLVLHQVFDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPT--TIRTTTFSFNASNDGHF 98 (162)
Q Consensus 21 ~~~~~L~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~--~~~~~~~~~~~~~~G~~ 98 (162)
...+.|+++++|.+++++++..++..++.+.|++|++|+++|+.++.+|+|++|.|+++.. +|+.....+..+++|++
T Consensus 39 ~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~~~~~~~~~~~G~~ 118 (469)
T 1o7f_A 39 IIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTA 118 (469)
T ss_dssp HHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGGGCEEEEEECTTCE
T ss_pred HHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCCCcceEEEEccCCCC
Confidence 4567899999999999999999999999999999999999999999999999999999976 34321123478999999
Q ss_pred eecccccCccccccCCCCcceeEEEecceeEEEEEeHHHHHHHHhhCC
Q 038042 99 CGEELLPRASVLQLGGLPISTRTVIAHTPVEAFVIEADDWKQLVNSFM 146 (162)
Q Consensus 99 ~Ge~~l~~~~~~~~~~~~~~~~tv~a~~~~~l~~i~~~~~~~l~~~~p 146 (162)
||+.+ +.+. ++.++++|.++|+++.|++++|.+++.++|
T Consensus 119 fGe~~-l~~~--------~~~~tv~A~~~~~l~~i~~~~~~~l~~~~p 157 (469)
T 1o7f_A 119 FGESI-LDNT--------PRHATIVTRESSELLRIEQEDFKALWEKYR 157 (469)
T ss_dssp ECGGG-GGTC--------BCSSEEEESSSEEEEEEEHHHHHHHHHHHG
T ss_pred cchhh-hCCC--------CccceEEEccceeEEEEcHHHHHHHHHhCH
Confidence 99987 6442 788999999999999999999999999998
No 37
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.78 E-value=1.6e-18 Score=127.47 Aligned_cols=106 Identities=23% Similarity=0.270 Sum_probs=90.8
Q ss_pred cCHHHHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeeec--CCceeeeeeeeCCCCeeecccccCcccccc
Q 038042 35 IDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTT--IRTTTFSFNASNDGHFCGEELLPRASVLQL 112 (162)
Q Consensus 35 l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~--~~~~~~~~~~~~~G~~~Ge~~l~~~~~~~~ 112 (162)
|++++++.++..++.+.|++|++|+++|++++++|+|.+|.|+++..+ |+... +..++||++||+.+++.+.
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G~~~~~~~~---- 74 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMI--IGYLNSGDFFGELGLFEKE---- 74 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTCEESCTTTCC------
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCCcccHHHhcCC----
Confidence 689999999999999999999999999999999999999999999763 44433 3689999999998887541
Q ss_pred CCCCcceeEEEecceeEEEEEeHHHHHHHHhhCC
Q 038042 113 GGLPISTRTVIAHTPVEAFVIEADDWKQLVNSFM 146 (162)
Q Consensus 113 ~~~~~~~~tv~a~~~~~l~~i~~~~~~~l~~~~p 146 (162)
....++..+++|.++|+++.+++++|.+++.++|
T Consensus 75 ~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p 108 (207)
T 2oz6_A 75 GSEQERSAWVRAKVECEVAEISYAKFRELSQQDS 108 (207)
T ss_dssp ---CBCCSEEEESSCEEEEEEEHHHHHHHHHHCH
T ss_pred CCCCCcceEEEECCcEEEEEECHHHHHHHHHHCH
Confidence 0000467899999999999999999999999999
No 38
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.78 E-value=2.8e-19 Score=133.44 Aligned_cols=105 Identities=10% Similarity=0.038 Sum_probs=94.3
Q ss_pred hhhhCccccccCHHHHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeee-cCCceeeeeeeeCCCCeeeccc
Q 038042 25 SLVLHQVFDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPT-TIRTTTFSFNASNDGHFCGEEL 103 (162)
Q Consensus 25 ~L~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~-~~~~~~~~~~~~~~G~~~Ge~~ 103 (162)
+|+++|+|.+++++++..++..++.+.|++|++|+++|++++++|+|.+|.|+++.. +|+... +..++||++||
T Consensus 1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~--~~~~~~G~~fG--- 75 (222)
T 1ft9_A 1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREIS--LFYLTSGDMFC--- 75 (222)
T ss_dssp -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEEEETTEEEE--EEEEETTCEEE---
T ss_pred CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEE--EEEcCCCCEec---
Confidence 477899999999999999999999999999999999999999999999999999733 454333 36799999999
Q ss_pred ccCccccccCCCCcceeEEEecceeEEEEEeHHHHHHHHhhCC
Q 038042 104 LPRASVLQLGGLPISTRTVIAHTPVEAFVIEADDWKQLVNSFM 146 (162)
Q Consensus 104 l~~~~~~~~~~~~~~~~tv~a~~~~~l~~i~~~~~~~l~~~~p 146 (162)
. +++.+++|.++|+++.+++++|.+++.++|
T Consensus 76 ---~---------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p 106 (222)
T 1ft9_A 76 ---M---------HSGCLVEATERTEVRFADIRTFEQKLQTCP 106 (222)
T ss_dssp ---S---------CSSCEEEESSCEEEEEECHHHHHHHHHHCG
T ss_pred ---C---------CCCEEEEEccceEEEEEeHHHHHHHHHHCh
Confidence 1 667899999999999999999999999999
No 39
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.77 E-value=3.5e-18 Score=130.83 Aligned_cols=107 Identities=22% Similarity=0.264 Sum_probs=90.8
Q ss_pred cccccCHHHHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeee--cCCceeeeeeeeCCCCeeecccccCcc
Q 038042 31 VFDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPT--TIRTTTFSFNASNDGHFCGEELLPRAS 108 (162)
Q Consensus 31 lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~--~~~~~~~~~~~~~~G~~~Ge~~l~~~~ 108 (162)
+...+++++++.++..++.+.|++|++|+++|++++.+|+|++|.|+++.. +|+... +..++||++||+.+++.+
T Consensus 53 ~~~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~--~~~~~~G~~~Ge~~~~~~- 129 (260)
T 3kcc_A 53 LGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMI--LSYLNQGDFIGELGLFEE- 129 (260)
T ss_dssp ------CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEEE--EEEEETTCEESCTTTTST-
T ss_pred HcCCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEEeehHHhCC-
Confidence 347799999999999999999999999999999999999999999999976 444333 368999999999888754
Q ss_pred ccccCCCCcceeEEEecceeEEEEEeHHHHHHHHhhCC
Q 038042 109 VLQLGGLPISTRTVIAHTPVEAFVIEADDWKQLVNSFM 146 (162)
Q Consensus 109 ~~~~~~~~~~~~tv~a~~~~~l~~i~~~~~~~l~~~~p 146 (162)
.++++.+++|.++|+++.+++++|.+++.++|
T Consensus 130 ------~~~~~~~~~A~~~~~l~~i~~~~~~~l~~~~p 161 (260)
T 3kcc_A 130 ------GQERSAWVRAKTACEVAEISYKKFRQLIQVNP 161 (260)
T ss_dssp ------TCBCCSEEEESSCEEEEEEEHHHHHHHHHHCT
T ss_pred ------CCCCceEEEECCCeEEEEEcHHHHHHHHHHCH
Confidence 12578899999999999999999999999999
No 40
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.77 E-value=8.6e-19 Score=141.49 Aligned_cols=124 Identities=12% Similarity=0.184 Sum_probs=107.5
Q ss_pred hHhhhhhCccccccCHHHHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeeec--CCceeeeeeeeCCCCee
Q 038042 22 PLHSLVLHQVFDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTT--IRTTTFSFNASNDGHFC 99 (162)
Q Consensus 22 ~~~~L~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~--~~~~~~~~~~~~~G~~~ 99 (162)
+..+++++++|..++++++..++..+..+.|++|++|+++|+.++.+|+|.+|.|+++..+ ++. .+.+..+++|++|
T Consensus 246 ~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~-~~~v~~l~~Gd~f 324 (381)
T 4din_B 246 YEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEE-YVEVGRLGPSDYF 324 (381)
T ss_dssp HHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSC-CCEEEEECTTCEE
T ss_pred HHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCc-eEEEEEeCCCCEe
Confidence 4467889999999999999999999999999999999999999999999999999999763 321 2233689999999
Q ss_pred ecccccCccccccCCCCcceeEEEecceeEEEEEeHHHHHHHHhhCC-CCCCchhH
Q 038042 100 GEELLPRASVLQLGGLPISTRTVIAHTPVEAFVIEADDWKQLVNSFM-LPDDQLPY 154 (162)
Q Consensus 100 Ge~~l~~~~~~~~~~~~~~~~tv~a~~~~~l~~i~~~~~~~l~~~~p-~~~~~l~~ 154 (162)
||.+++.+. ++.++++|.++|+++.|++++|.+++..+| +..+.++.
T Consensus 325 Ge~all~~~--------~r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~~~~~~~ 372 (381)
T 4din_B 325 GEIALLLNR--------PRAATVVARGPLKCVKLDRPRFERVLGPCSEILKRNIQR 372 (381)
T ss_dssp CTTGGGSCC--------BCSSEEEESSCBEEEEEEHHHHHHHHCCHHHHHHTTHHH
T ss_pred chHHHhCCC--------CceeEEEEcCCEEEEEEeHHHHHHHHhhhHHHHHHHHHH
Confidence 999988653 788999999999999999999999999998 54444433
No 41
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.76 E-value=1.2e-18 Score=129.39 Aligned_cols=110 Identities=13% Similarity=0.181 Sum_probs=89.4
Q ss_pred hCccccccCHHHHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeee--cCCceeeeeeeeCCCCeeeccccc
Q 038042 28 LHQVFDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPT--TIRTTTFSFNASNDGHFCGEELLP 105 (162)
Q Consensus 28 ~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~--~~~~~~~~~~~~~~G~~~Ge~~l~ 105 (162)
+-|+|...++.+++.+...++.+.|++|++|+++|+.++++|+|.+|.|+++.. +|+...+ ..+++|++||+.+++
T Consensus 3 ~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~~--~~~~~G~~~G~~~~~ 80 (213)
T 1o5l_A 3 SDKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEI--DEIKPVQIIASGFIF 80 (213)
T ss_dssp ----------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEEE--EEECSSEESSGGGTT
T ss_pred ccccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEE--EEecCCCEeeeHHHh
Confidence 348899999999999999999999999999999999999999999999999976 4544333 689999999998876
Q ss_pred CccccccCCCCcceeEEEecceeEEEEEeHHHHHHHHhhCC
Q 038042 106 RASVLQLGGLPISTRTVIAHTPVEAFVIEADDWKQLVNSFM 146 (162)
Q Consensus 106 ~~~~~~~~~~~~~~~tv~a~~~~~l~~i~~~~~~~l~~~~p 146 (162)
.+ ..++..+++|.++|+++.+++++|.+++.++|
T Consensus 81 ~~-------~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p 114 (213)
T 1o5l_A 81 SS-------EPRFPVNVVAGENSKILSIPKEVFLDLLMKDR 114 (213)
T ss_dssp SS-------SCBCSSEEEESSSEEEEEEEHHHHHHHHHHCH
T ss_pred cC-------CCCceEEEEEccceEEEEEeHHHHHHHHHHCH
Confidence 53 11677899999999999999999999999999
No 42
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.76 E-value=8.3e-19 Score=141.57 Aligned_cols=113 Identities=14% Similarity=0.215 Sum_probs=103.1
Q ss_pred chHhhhhhCccccccCHHHHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 21 TPLHSLVLHQVFDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 21 ~~~~~L~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
....+|+++++|.+|+++++..++..++.+.|++|++|+++|+.++++|+|++|.|+++. +|+ .+ ..+++|++||
T Consensus 127 ~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~-~~~--~v--~~l~~G~~fG 201 (381)
T 4din_B 127 ALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYV-NGE--WV--TNISEGGSFG 201 (381)
T ss_dssp HHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEE-TTE--EE--EEEESSCCBC
T ss_pred HHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEE-CCe--Ee--eeCCCCCEEE
Confidence 456789999999999999999999999999999999999999999999999999999997 442 33 5689999999
Q ss_pred cccccCccccccCCCCcceeEEEecceeEEEEEeHHHHHHHHhhCC
Q 038042 101 EELLPRASVLQLGGLPISTRTVIAHTPVEAFVIEADDWKQLVNSFM 146 (162)
Q Consensus 101 e~~l~~~~~~~~~~~~~~~~tv~a~~~~~l~~i~~~~~~~l~~~~p 146 (162)
+.+++.+. ++.+++.|.++|+++.|++++|.+++.++|
T Consensus 202 e~all~~~--------~r~atv~A~~~~~l~~i~~~~f~~ll~~~~ 239 (381)
T 4din_B 202 ELALIYGT--------PRAATVKAKTDLKLWGIDRDSYRRILMGST 239 (381)
T ss_dssp GGGGTSCC--------BCSSEEEESSSCEEEEEEHHHHHHHHHHHH
T ss_pred chHHhcCC--------CcceEEEECCCEEEEEEchHHHHHhhhhhh
Confidence 99988653 788999999999999999999999999887
No 43
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.75 E-value=2.8e-17 Score=135.02 Aligned_cols=113 Identities=9% Similarity=0.190 Sum_probs=101.8
Q ss_pred hHhhhhhCccccccCHHHHHHHHhhcee-eeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 22 PLHSLVLHQVFDRIDEHFLNAMLDLLKL-VPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 22 ~~~~L~~~~lF~~l~~~~l~~l~~~~~~-~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
...+|+++++|..++++++..++..+.. +.|++|++|+++|+.++.+|+|.+|.|+++.. ++ .. +..+++|++||
T Consensus 335 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~-~~-~~--~~~l~~G~~fG 410 (469)
T 1o7f_A 335 IYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY-GK-GV--VCTLHEGDDFG 410 (469)
T ss_dssp HHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEET-TT-EE--EEEEETTCEEC
T ss_pred HHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEEc-CC-ee--EEEecCCCEEE
Confidence 4678999999999999999999999985 59999999999999999999999999999974 32 23 36799999999
Q ss_pred cccccCccccccCCCCcceeEEEecc-eeEEEEEeHHHHHHHHhhCC
Q 038042 101 EELLPRASVLQLGGLPISTRTVIAHT-PVEAFVIEADDWKQLVNSFM 146 (162)
Q Consensus 101 e~~l~~~~~~~~~~~~~~~~tv~a~~-~~~l~~i~~~~~~~l~~~~p 146 (162)
+.+++.+. ++.+++.|.+ +|+++.|++++|.+++.++|
T Consensus 411 e~~ll~~~--------~~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p 449 (469)
T 1o7f_A 411 KLALVNDA--------PRAASIVLREDNCHFLRVDKEDFNRILRDVE 449 (469)
T ss_dssp GGGGTCCS--------CCSSEEEESSSSEEEEEEEHHHHHHHHHHTT
T ss_pred EehhhcCC--------CceEEEEEecCCEEEEEEcHHHHHHHHHHCh
Confidence 99988653 7889999998 79999999999999999999
No 44
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.75 E-value=5.3e-18 Score=128.72 Aligned_cols=109 Identities=12% Similarity=0.074 Sum_probs=95.0
Q ss_pred hhhhCccccccCHHHHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeee--cCCceeeeeeeeCCCCeeecc
Q 038042 25 SLVLHQVFDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPT--TIRTTTFSFNASNDGHFCGEE 102 (162)
Q Consensus 25 ~L~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~--~~~~~~~~~~~~~~G~~~Ge~ 102 (162)
++.....+..+++++++.++..++.+.|++|++|+++|++++.+|+|.+|.|+++.. +|+... +..++||++||+
T Consensus 10 ~~~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~G~~~G~- 86 (250)
T 3e6c_C 10 FCGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKL--LYYAGGNSLIGK- 86 (250)
T ss_dssp CCCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEE--EEEECTTCEECC-
T ss_pred hhhhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEE--EEEecCCCEEee-
Confidence 345555669999999999999999999999999999999999999999999999976 444433 378999999999
Q ss_pred cccCccccccCCCCcceeEEEecceeEEEEEeHHHHHHHHhhCC
Q 038042 103 LLPRASVLQLGGLPISTRTVIAHTPVEAFVIEADDWKQLVNSFM 146 (162)
Q Consensus 103 ~l~~~~~~~~~~~~~~~~tv~a~~~~~l~~i~~~~~~~l~~~~p 146 (162)
++.+ .+..+++|.++|+++.+++++|.+++.++|
T Consensus 87 -~l~~---------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p 120 (250)
T 3e6c_C 87 -LYPT---------GNNIYATAMEPTRTCWFSEKSLRTVFRTDE 120 (250)
T ss_dssp -CSCC---------SCCEEEEESSSEEEEEECHHHHHHHHHHCT
T ss_pred -ecCC---------CCceEEEEcccEEEEEEcHHHHHHHHHHCH
Confidence 4432 266899999999999999999999999999
No 45
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.71 E-value=7.6e-17 Score=121.56 Aligned_cols=104 Identities=12% Similarity=0.136 Sum_probs=86.7
Q ss_pred cccCHHHHHHHHh--hceeeeecCCCEEEecCCccCeEEEEEeeEEEEeee--cCCceeeeeeeeCCCCeeecccccCcc
Q 038042 33 DRIDEHFLNAMLD--LLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPT--TIRTTTFSFNASNDGHFCGEELLPRAS 108 (162)
Q Consensus 33 ~~l~~~~l~~l~~--~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~--~~~~~~~~~~~~~~G~~~Ge~~l~~~~ 108 (162)
++++++++..+.. .++.+.|++|++|+++|++++++|+|.+|.|+++.. +|++..+ ..+ ||++||+.+++.+.
T Consensus 2 ~~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~--~~~-~G~~~Ge~~~~~~~ 78 (238)
T 2bgc_A 2 SNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNL--QYY-KGAFVIMSGFIDTE 78 (238)
T ss_dssp --CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEEE--EEE-ESSEEEESBCTTTC
T ss_pred CCCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEEEE--EEc-CCCEecchhhhcCC
Confidence 4688999999985 589999999999999999999999999999999976 4554444 567 99999998887542
Q ss_pred ccccCCCCc-ceeEEEec-ceeEEEEEeHHHHHHHHhhCC
Q 038042 109 VLQLGGLPI-STRTVIAH-TPVEAFVIEADDWKQLVNSFM 146 (162)
Q Consensus 109 ~~~~~~~~~-~~~tv~a~-~~~~l~~i~~~~~~~l~~~~p 146 (162)
++ +..+++|. ++|+++.+++++|.+++.++|
T Consensus 79 -------~~~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p 111 (238)
T 2bgc_A 79 -------TSVGYYNLEVISEQATAYVIKINELKELLSKNL 111 (238)
T ss_dssp -------CBSCCCEEEECSSEEEEEEEEHHHHHHHHHHCH
T ss_pred -------CcCcceeEEEEEcceEEEEEeHHHHHHHHHHCH
Confidence 11 25677787 599999999999999999999
No 46
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.71 E-value=7.1e-19 Score=140.56 Aligned_cols=121 Identities=18% Similarity=0.269 Sum_probs=1.5
Q ss_pred hHhhhhhCccccccCHHHHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeeec
Q 038042 22 PLHSLVLHQVFDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCGE 101 (162)
Q Consensus 22 ~~~~L~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~Ge 101 (162)
..+.+++.|+|+++++++++.+...++.+.|++||.|+++|++++++|+|.+|.++++..+ . ..+++|++|||
T Consensus 226 ~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~--~-----~~l~~G~~fGe 298 (355)
T 3beh_A 226 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN--P-----VELGPGAFFGE 298 (355)
T ss_dssp HHC-----------------------------------------------------------------------------
T ss_pred cchhhhcccccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeeEEEEEECC--e-----eEECCCCEEee
Confidence 3467899999999999999999999999999999999999999999999999999999764 1 36889999999
Q ss_pred ccccCccccccCCCCcceeEEEecceeEEEEEeHHHHHHHHhhCC-CCCCchhHHHh
Q 038042 102 ELLPRASVLQLGGLPISTRTVIAHTPVEAFVIEADDWKQLVNSFM-LPDDQLPYIFR 157 (162)
Q Consensus 102 ~~l~~~~~~~~~~~~~~~~tv~a~~~~~l~~i~~~~~~~l~~~~p-~~~~~l~~~~~ 157 (162)
.+++.+. +++.+++|.++|+++.+++++|.++++++| +....++...+
T Consensus 299 ~~~l~~~--------~~~~~~~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~l~~ 347 (355)
T 3beh_A 299 MALISGE--------PRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALE 347 (355)
T ss_dssp ---------------------------------------------------------
T ss_pred hHHhCCC--------CcceEEEECccEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 9887653 778999999999999999999999999999 44444433333
No 47
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.69 E-value=1.3e-16 Score=137.60 Aligned_cols=114 Identities=9% Similarity=0.173 Sum_probs=102.5
Q ss_pred chHhhhhhCccccccCHHHHHHHHhhce-eeeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCee
Q 038042 21 TPLHSLVLHQVFDRIDEHFLNAMLDLLK-LVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFC 99 (162)
Q Consensus 21 ~~~~~L~~~~lF~~l~~~~l~~l~~~~~-~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~ 99 (162)
....+|+++++|.+++++++..++..+. .+.|++|++|+++|+.++.+|+|++|.|+++.. |+ ..+ ..+++|++|
T Consensus 29 ~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~-g~-~il--~~l~~Gd~f 104 (694)
T 3cf6_E 29 IIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY-GK-GVV--CTLHEGDDF 104 (694)
T ss_dssp HHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEET-TT-EEE--EEEETTCEE
T ss_pred HHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEe-CC-EEE--EEeCCCCEe
Confidence 4567899999999999999999999998 689999999999999999999999999999985 43 233 679999999
Q ss_pred ecccccCccccccCCCCcceeEEEecc-eeEEEEEeHHHHHHHHhhCC
Q 038042 100 GEELLPRASVLQLGGLPISTRTVIAHT-PVEAFVIEADDWKQLVNSFM 146 (162)
Q Consensus 100 Ge~~l~~~~~~~~~~~~~~~~tv~a~~-~~~l~~i~~~~~~~l~~~~p 146 (162)
|+.+++.+. ++.++++|.+ +|+++.|++++|.+++.++|
T Consensus 105 Ge~al~~~~--------~~~~tv~A~edd~~ll~I~~~~f~~ll~~~p 144 (694)
T 3cf6_E 105 GKLALVNDA--------PRAASIVLREDNCHFLRVDKEDFNRILRDVE 144 (694)
T ss_dssp CHHHHHHTC--------BCSSEEEECSSSEEEEEEEHHHHHHHTTTTC
T ss_pred ehHHHhCCC--------CceEEEEEeeCceEEEEEeHHHHHHHHHHCH
Confidence 998877542 7889999999 59999999999999999999
No 48
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.69 E-value=1.1e-16 Score=121.18 Aligned_cols=102 Identities=14% Similarity=0.176 Sum_probs=87.9
Q ss_pred HHHHHHHHhhce---eeeecCCCEEEecCCccCeEEEEEeeEEEEeee--cCCceeeeeeeeCCCCeeecccccCccccc
Q 038042 37 EHFLNAMLDLLK---LVPYTERSILVHEGSGVEKMFFIVRGKIWSEPT--TIRTTTFSFNASNDGHFCGEELLPRASVLQ 111 (162)
Q Consensus 37 ~~~l~~l~~~~~---~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~--~~~~~~~~~~~~~~G~~~Ge~~l~~~~~~~ 111 (162)
++++..|...+. .+.|++|++|+++|+.++.+|+|.+|.|+++.. +|+... +..++||++||+.+++.+.
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~--l~~~~~g~~~G~~~~~~~~--- 104 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEIT--VALLRENSVFGVLSLLTGN--- 104 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEEE--EEEECTTCEESCHHHHSSC---
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEE--EEEecCCCEEcchHHhCCC---
Confidence 788899999998 999999999999999999999999999999976 344433 3789999999998776542
Q ss_pred cCCCCcceeEEEecceeEEEEEeHHHHHHHHhhCC
Q 038042 112 LGGLPISTRTVIAHTPVEAFVIEADDWKQLVNSFM 146 (162)
Q Consensus 112 ~~~~~~~~~tv~a~~~~~l~~i~~~~~~~l~~~~p 146 (162)
. .++..+++|.++|+++.+++++|.+++.++|
T Consensus 105 --~-~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p 136 (243)
T 3la7_A 105 --K-SDRFYHAVAFTPVELLSAPIEQVEQALKENP 136 (243)
T ss_dssp --C-SBCCEEEEESSSEEEEEEEHHHHHHHHTTCH
T ss_pred --C-CcceEEEEEccceEEEEEcHHHHHHHHHHCH
Confidence 0 0245899999999999999999999999999
No 49
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.68 E-value=4e-16 Score=139.05 Aligned_cols=116 Identities=14% Similarity=0.176 Sum_probs=101.1
Q ss_pred hHhhhhhCccccccCHHHHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeeec--CCceeeeeeeeCCCCee
Q 038042 22 PLHSLVLHQVFDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTT--IRTTTFSFNASNDGHFC 99 (162)
Q Consensus 22 ~~~~L~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~--~~~~~~~~~~~~~G~~~ 99 (162)
....|+++++|+.+++.++..|+..+....|++|++||++||.++++|+|++|.|.++..+ +......+..+.+|+.|
T Consensus 40 I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~~~~~~~~~v~~l~~G~sF 119 (999)
T 4f7z_A 40 IFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAF 119 (999)
T ss_dssp HHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSSSCTTSCEEEEEEETTCEE
T ss_pred HHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecCCCCCCceeEEEecCCcch
Confidence 3456999999999999999999999999999999999999999999999999999998642 21112223679999999
Q ss_pred ecccccCccccccCCCCcceeEEEecceeEEEEEeHHHHHHHHhhCC
Q 038042 100 GEELLPRASVLQLGGLPISTRTVIAHTPVEAFVIEADDWKQLVNSFM 146 (162)
Q Consensus 100 Ge~~l~~~~~~~~~~~~~~~~tv~a~~~~~l~~i~~~~~~~l~~~~p 146 (162)
|| +++.+. |+++|+.|.++|+++.+++++|..++.++|
T Consensus 120 GE-all~n~--------pRtaTv~a~~~s~l~~l~r~~F~~i~~~~~ 157 (999)
T 4f7z_A 120 GE-SILDNT--------PRHATIVTRESSELLRIEQEDFKALWEKYR 157 (999)
T ss_dssp CG-GGGGTC--------CCSSEEEESSSEEEEEEEHHHHHHHHHHHH
T ss_pred hh-hhccCC--------CcceEEEeccceEEEEEEHHHHHHHHHhCh
Confidence 99 776553 789999999999999999999999999876
No 50
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.62 E-value=4e-15 Score=132.61 Aligned_cols=112 Identities=9% Similarity=0.170 Sum_probs=98.6
Q ss_pred chHhhhhhCccccccCHHHHHHHHhhcee-eeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCee
Q 038042 21 TPLHSLVLHQVFDRIDEHFLNAMLDLLKL-VPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFC 99 (162)
Q Consensus 21 ~~~~~L~~~~lF~~l~~~~l~~l~~~~~~-~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~ 99 (162)
....++.++|.|..++...+..|+..+.. .++++|++|++|||.++.+|||++|.|+|+.... ..+ ..+++||+|
T Consensus 334 ~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~~~~--~~v--~~L~~Gd~F 409 (999)
T 4f7z_A 334 IIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGK--GVV--CTLHEGDDF 409 (999)
T ss_dssp HHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEETTT--EEE--EEEETTCEE
T ss_pred HHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEEcCC--cce--EEecCCCcc
Confidence 45678999999999999999999999986 5568899999999999999999999999997422 123 578999999
Q ss_pred ecccccCccccccCCCCcceeEEEecce-eEEEEEeHHHHHHHHhh
Q 038042 100 GEELLPRASVLQLGGLPISTRTVIAHTP-VEAFVIEADDWKQLVNS 144 (162)
Q Consensus 100 Ge~~l~~~~~~~~~~~~~~~~tv~a~~~-~~l~~i~~~~~~~l~~~ 144 (162)
||.+++.+. |+.+|+.|.+| |+++++++++|.+++.+
T Consensus 410 GElALL~~~--------PR~aTV~a~~d~c~fl~i~k~df~~il~~ 447 (999)
T 4f7z_A 410 GKLALVNDA--------PRAASIVLREDNCHFLRVDKEDGNRILRD 447 (999)
T ss_dssp CGGGGTCSC--------BCSSEEEESSSSEEEEEEEHHHHHHHHHH
T ss_pred cchhhccCC--------CeeEEEEEecCceEEEEeeHHHHHHHHhH
Confidence 999999764 89999999985 99999999999999977
No 51
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.55 E-value=6.8e-15 Score=107.57 Aligned_cols=79 Identities=14% Similarity=0.129 Sum_probs=69.1
Q ss_pred eeecCCCEEEecCCccCeEEEEEeeEEEEeee--cCCceeeeeeeeCCCCeeecccccCccccccCCCCcceeEEEecce
Q 038042 50 VPYTERSILVHEGSGVEKMFFIVRGKIWSEPT--TIRTTTFSFNASNDGHFCGEELLPRASVLQLGGLPISTRTVIAHTP 127 (162)
Q Consensus 50 ~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~--~~~~~~~~~~~~~~G~~~Ge~~l~~~~~~~~~~~~~~~~tv~a~~~ 127 (162)
+.|++|++|+++|++++.+|+|.+|.|+++.. +|+... +..++||++||+ +++.+. ++..+++|.++
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~G~~~Ge-~~~~~~--------~~~~~~~A~~~ 70 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLIT--LRHVLPGDYFGE-EALEGK--------AYRYTAEAMTE 70 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEEE--EEEECTTCEECG-GGGTCS--------BCSSEEEESSS
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEecCCCEech-hhhCCC--------CceeEEEECCc
Confidence 68999999999999999999999999999976 344333 368999999999 887643 78899999999
Q ss_pred eEEEEEeHHHHH
Q 038042 128 VEAFVIEADDWK 139 (162)
Q Consensus 128 ~~l~~i~~~~~~ 139 (162)
|+++.+++++|.
T Consensus 71 ~~v~~i~~~~~~ 82 (195)
T 3b02_A 71 AVVQGLEPRAMD 82 (195)
T ss_dssp EEEEEECGGGCC
T ss_pred EEEEEEcHHHcC
Confidence 999999999986
No 52
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=99.42 E-value=1.8e-13 Score=100.30 Aligned_cols=85 Identities=15% Similarity=0.163 Sum_probs=68.3
Q ss_pred HHhhceeeeecCCCEEEecCCcc--CeEEEEEeeEEEEeee--cCCceeeeeeeeCCCCeeecccccCccccccCCCCcc
Q 038042 43 MLDLLKLVPYTERSILVHEGSGV--EKMFFIVRGKIWSEPT--TIRTTTFSFNASNDGHFCGEELLPRASVLQLGGLPIS 118 (162)
Q Consensus 43 l~~~~~~~~~~~ge~I~~~G~~~--~~ly~I~~G~v~v~~~--~~~~~~~~~~~~~~G~~~Ge~~l~~~~~~~~~~~~~~ 118 (162)
+...++.+.|++|++|+++|+++ +++|+|.+|.|+++.. +|+...+ ..++||++||+ +++.+. ++
T Consensus 1 l~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~~--~~~~~g~~~G~-~~l~~~--------~~ 69 (202)
T 2zcw_A 1 MTQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALTL--RLVRPGGFFGE-EALFGQ--------ER 69 (202)
T ss_dssp -----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEEEE--EEECTTCEECT-HHHHTC--------CB
T ss_pred CCccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEEE--EEecCCCEeee-hhcCCC--------Cc
Confidence 34567889999999999999999 9999999999999876 4544333 68999999999 655332 77
Q ss_pred eeEEEecceeEEEEEeHHHHH
Q 038042 119 TRTVIAHTPVEAFVIEADDWK 139 (162)
Q Consensus 119 ~~tv~a~~~~~l~~i~~~~~~ 139 (162)
..+++|.++|+++.+ +++|.
T Consensus 70 ~~~~~A~~~~~v~~i-~~~~~ 89 (202)
T 2zcw_A 70 IYFAEAATDVRLEPL-PENPD 89 (202)
T ss_dssp CSEEEESSCEEEEEC-CSSCC
T ss_pred ceEEEEcccEEEEEE-hHhcC
Confidence 899999999999999 87765
No 53
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=93.88 E-value=0.63 Score=34.14 Aligned_cols=70 Identities=10% Similarity=0.093 Sum_probs=53.4
Q ss_pred ceeeeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeeecccccCccccccCCCCcceeEEEecc
Q 038042 47 LKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCGEELLPRASVLQLGGLPISTRTVIAHT 126 (162)
Q Consensus 47 ~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~Ge~~l~~~~~~~~~~~~~~~~tv~a~~ 126 (162)
+....+.+|+.+-..-.+.+.+++|++|++++... |.. ..+++||++=- .. ..+..+.|.+
T Consensus 39 ~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i~-~~~-----~~l~~Gd~~~~---p~----------~~~H~~~a~~ 99 (227)
T 3rns_A 39 ISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFIE-NNK-----KTISNGDFLEI---TA----------NHNYSIEARD 99 (227)
T ss_dssp EEEEEECTTCEEEECSCSSCEEEEEEESEEEEEES-SCE-----EEEETTEEEEE---CS----------SCCEEEEESS
T ss_pred EEEEEECCCCccCccccCCCEEEEEEeCEEEEEEC-CEE-----EEECCCCEEEE---CC----------CCCEEEEECC
Confidence 34578999999988888899999999999999884 432 46789998742 11 2346788999
Q ss_pred eeEEEEEeH
Q 038042 127 PVEAFVIEA 135 (162)
Q Consensus 127 ~~~l~~i~~ 135 (162)
++.++.+..
T Consensus 100 ~~~~l~i~~ 108 (227)
T 3rns_A 100 NLKLIEIGE 108 (227)
T ss_dssp SEEEEEEEE
T ss_pred CcEEEEEEe
Confidence 999998733
No 54
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=91.45 E-value=1.9 Score=27.84 Aligned_cols=66 Identities=9% Similarity=-0.062 Sum_probs=45.6
Q ss_pred eeeeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeeecccccCccccccCCCCcceeEEEecce
Q 038042 48 KLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCGEELLPRASVLQLGGLPISTRTVIAHTP 127 (162)
Q Consensus 48 ~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~Ge~~l~~~~~~~~~~~~~~~~tv~a~~~ 127 (162)
....+++|+.+-.--.....+++|++|.+++.. +++. ..+++||.+=- .. .....+.+.++
T Consensus 39 ~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i-~~~~-----~~l~~Gd~i~i---p~----------~~~H~~~~~~~ 99 (114)
T 3fjs_A 39 MRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGV-DGAQ-----RRLHQGDLLYL---GA----------GAAHDVNAITN 99 (114)
T ss_dssp EEEEECTTCEEEEECCSSCEEEEEEESCEEEEE-TTEE-----EEECTTEEEEE---CT----------TCCEEEEESSS
T ss_pred EEEEECCCCccCceeCCCcEEEEEEECEEEEEE-CCEE-----EEECCCCEEEE---CC----------CCcEEEEeCCC
Confidence 346788888876655667799999999999887 3421 46889998742 11 22356777788
Q ss_pred eEEEE
Q 038042 128 VEAFV 132 (162)
Q Consensus 128 ~~l~~ 132 (162)
+.++.
T Consensus 100 ~~~~~ 104 (114)
T 3fjs_A 100 TSLLV 104 (114)
T ss_dssp EEEEE
T ss_pred cEEEE
Confidence 76554
No 55
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=90.30 E-value=2.3 Score=27.00 Aligned_cols=65 Identities=8% Similarity=0.070 Sum_probs=41.4
Q ss_pred eeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeeecccccCccccccCCCCcceeEEEecceeE
Q 038042 50 VPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCGEELLPRASVLQLGGLPISTRTVIAHTPVE 129 (162)
Q Consensus 50 ~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~Ge~~l~~~~~~~~~~~~~~~~tv~a~~~~~ 129 (162)
..+++|+.+-.-......+++|++|.+.+.. +++. ..+.+||++=- .. .....+.+.+++.
T Consensus 43 ~~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i-~~~~-----~~l~~Gd~i~i---~~----------~~~H~~~~~~~~~ 103 (114)
T 2ozj_A 43 FSFADGESVSEEEYFGDTLYLILQGEAVITF-DDQK-----IDLVPEDVLMV---PA----------HKIHAIAGKGRFK 103 (114)
T ss_dssp EEEETTSSCCCBCCSSCEEEEEEEEEEEEEE-TTEE-----EEECTTCEEEE---CT----------TCCBEEEEEEEEE
T ss_pred EEECCCCccccEECCCCeEEEEEeCEEEEEE-CCEE-----EEecCCCEEEE---CC----------CCcEEEEeCCCcE
Confidence 4466776654444556789999999999877 3421 46889997742 11 1224455667777
Q ss_pred EEEE
Q 038042 130 AFVI 133 (162)
Q Consensus 130 l~~i 133 (162)
++.+
T Consensus 104 ~~~i 107 (114)
T 2ozj_A 104 MLQI 107 (114)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7665
No 56
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=88.92 E-value=1.5 Score=28.85 Aligned_cols=45 Identities=13% Similarity=0.226 Sum_probs=33.0
Q ss_pred eeeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 49 LVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 49 ~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
...+.+|..+-.- ...+.+++|++|++++.. +|+. ..+++||++-
T Consensus 44 ~~~~~pG~~~~~H-~~~~E~~~Vl~G~~~~~~-~g~~-----~~l~~GD~v~ 88 (119)
T 3lwc_A 44 YGRYAPGQSLTET-MAVDDVMIVLEGRLSVST-DGET-----VTAGPGEIVY 88 (119)
T ss_dssp EEEECTTCEEEEE-CSSEEEEEEEEEEEEEEE-TTEE-----EEECTTCEEE
T ss_pred EEEECCCCCcCcc-CCCCEEEEEEeCEEEEEE-CCEE-----EEECCCCEEE
Confidence 3567788765333 367899999999999987 5522 3688999874
No 57
>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A {Antonospora locustae}
Probab=87.05 E-value=1.4 Score=31.36 Aligned_cols=46 Identities=13% Similarity=0.197 Sum_probs=36.6
Q ss_pred chHhhhhhCccccccCHHHHHHHHhhceeeeecCCCEEEecCCccCeEEEEE
Q 038042 21 TPLHSLVLHQVFDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIV 72 (162)
Q Consensus 21 ~~~~~L~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~ 72 (162)
.+..-.-..|.|.+++-.+.+.++.. ..|++|+++.+..+++.+..
T Consensus 6 ~~~~R~I~HP~F~n~s~~qAe~~L~~------~~G~~liRPSsk~~~ltit~ 51 (178)
T 2xp1_A 6 YTNPRFYKHPLFKNFNVTESENYLRS------STDDFLIRKGSRHGYCVLVI 51 (178)
T ss_dssp SSCCGGGGSTTEECCCHHHHHHHHHH------SSCCEEEEECSSTTEEEEEE
T ss_pred eeeeeeccCCCcCCCCHHHHHHHHhc------CCCCEEEeecCCCCcEEEEE
Confidence 44455678899999999999998888 25999999999877654443
No 58
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=85.88 E-value=4.8 Score=25.36 Aligned_cols=67 Identities=13% Similarity=0.090 Sum_probs=43.6
Q ss_pred eeeeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeeecccccCccccccCCCCcceeEEEecce
Q 038042 48 KLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCGEELLPRASVLQLGGLPISTRTVIAHTP 127 (162)
Q Consensus 48 ~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~Ge~~l~~~~~~~~~~~~~~~~tv~a~~~ 127 (162)
....+++|..+-.--.....+++|++|.+.+.. +++. ..+.+||++=- . + -....+.+.++
T Consensus 43 ~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~-~~~~-----~~l~~Gd~~~i---p-~---------~~~H~~~~~~~ 103 (115)
T 1yhf_A 43 TVFSLDKGQEIGRHSSPGDAMVTILSGLAEITI-DQET-----YRVAEGQTIVM---P-A---------GIPHALYAVEA 103 (115)
T ss_dssp EEEEECTTCEEEEECCSSEEEEEEEESEEEEEE-TTEE-----EEEETTCEEEE---C-T---------TSCEEEEESSC
T ss_pred EEEEECCCCccCCEECCCcEEEEEEeCEEEEEE-CCEE-----EEECCCCEEEE---C-C---------CCCEEEEECCC
Confidence 345677887764433446789999999999876 4421 35789998742 1 1 12345667777
Q ss_pred eEEEEE
Q 038042 128 VEAFVI 133 (162)
Q Consensus 128 ~~l~~i 133 (162)
+.++.+
T Consensus 104 ~~~~~v 109 (115)
T 1yhf_A 104 FQMLLV 109 (115)
T ss_dssp EEEEEE
T ss_pred ceEEEE
Confidence 777665
No 59
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=85.77 E-value=2.6 Score=26.85 Aligned_cols=58 Identities=9% Similarity=0.032 Sum_probs=38.1
Q ss_pred CHHHHHHHHhh-ceeeeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 36 DEHFLNAMLDL-LKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 36 ~~~~l~~l~~~-~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
..+.+...-.. +....+.+|..-.. .....+++|++|.+.+...++.. ..+++||.+-
T Consensus 21 ~~~~l~~~g~~~~~~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~i~~g~~-----~~l~~GD~i~ 79 (101)
T 1o5u_A 21 TPEKLKELSVEKWPIWEKEVSEFDWY--YDTNETCYILEGKVEVTTEDGKK-----YVIEKGDLVT 79 (101)
T ss_dssp CHHHHHHHTGGGSCEEEECSEEEEEE--CSSCEEEEEEEEEEEEEETTCCE-----EEEETTCEEE
T ss_pred CccEEeeCCceEEEEEEeCCCccccc--CCceEEEEEEeCEEEEEECCCCE-----EEECCCCEEE
Confidence 34444443322 33567788876554 44688999999999998843532 3578999874
No 60
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=85.56 E-value=6 Score=28.76 Aligned_cols=66 Identities=11% Similarity=0.046 Sum_probs=45.8
Q ss_pred eeeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeeecccccCccccccCCCCcceeEEEe-cce
Q 038042 49 LVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCGEELLPRASVLQLGGLPISTRTVIA-HTP 127 (162)
Q Consensus 49 ~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~Ge~~l~~~~~~~~~~~~~~~~tv~a-~~~ 127 (162)
...+++|+.+-.--.+.+.+++|++|.+++.. +++. ..+.+||.+=- .. .....+.+ .++
T Consensus 157 ~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i-~g~~-----~~l~~Gd~i~i---p~----------~~~H~~~~~~~~ 217 (227)
T 3rns_A 157 IMSFWKGESLDPHKAPGDALVTVLDGEGKYYV-DGKP-----FIVKKGESAVL---PA----------NIPHAVEAETEN 217 (227)
T ss_dssp EEEECTTCEEEEECCSSEEEEEEEEEEEEEEE-TTEE-----EEEETTEEEEE---CT----------TSCEEEECCSSC
T ss_pred EEEECCCCccCCEECCCcEEEEEEeEEEEEEE-CCEE-----EEECCCCEEEE---CC----------CCcEEEEeCCCC
Confidence 46788888876555566789999999999887 4421 46789998632 11 22356777 888
Q ss_pred eEEEEE
Q 038042 128 VEAFVI 133 (162)
Q Consensus 128 ~~l~~i 133 (162)
+.++.+
T Consensus 218 ~~~ll~ 223 (227)
T 3rns_A 218 FKMLLI 223 (227)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 877654
No 61
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=84.48 E-value=5.7 Score=25.03 Aligned_cols=67 Identities=7% Similarity=-0.038 Sum_probs=44.2
Q ss_pred eeeeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeeecccccCccccccCCCCcceeEEEecce
Q 038042 48 KLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCGEELLPRASVLQLGGLPISTRTVIAHTP 127 (162)
Q Consensus 48 ~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~Ge~~l~~~~~~~~~~~~~~~~tv~a~~~ 127 (162)
....+++|..+-.--.....+++|++|.+.+.. +++. ..+.+||++=- .. .....+.+.++
T Consensus 37 ~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~-~~~~-----~~l~~Gd~~~i---p~----------~~~H~~~~~~~ 97 (116)
T 2pfw_A 37 VKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNV-DGVI-----KVLTAGDSFFV---PP----------HVDHGAVCPTG 97 (116)
T ss_dssp EEEEECTTEEEEEECCSSEEEEEEEEECEEEEE-TTEE-----EEECTTCEEEE---CT----------TCCEEEEESSC
T ss_pred EEEEECCCCcCCcEECCcceEEEEEeeEEEEEE-CCEE-----EEeCCCCEEEE---Cc----------CCceeeEeCCC
Confidence 446778887753333346789999999999887 4421 46889998632 11 12345667778
Q ss_pred eEEEEE
Q 038042 128 VEAFVI 133 (162)
Q Consensus 128 ~~l~~i 133 (162)
+.++.+
T Consensus 98 ~~~l~v 103 (116)
T 2pfw_A 98 GILIDT 103 (116)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 887766
No 62
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=83.99 E-value=2.4 Score=27.42 Aligned_cols=48 Identities=4% Similarity=-0.072 Sum_probs=32.7
Q ss_pred eeeeecCCCEEEecCCc-cCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 48 KLVPYTERSILVHEGSG-VEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 48 ~~~~~~~ge~I~~~G~~-~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
....+++|..+-.--.. ...+++|++|.+++...+++. ..+++||++-
T Consensus 42 ~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~~~~-----~~l~~Gd~~~ 90 (125)
T 3h8u_A 42 VVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQGNGIV-----THLKAGDIAI 90 (125)
T ss_dssp EEEEECTTCEECCC-CTTCEEEEEEEECEEEEECSTTCE-----EEEETTEEEE
T ss_pred EEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEECCCeE-----EEeCCCCEEE
Confidence 34677888876444344 367888999999987634432 3578999764
No 63
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=83.59 E-value=2.1 Score=30.09 Aligned_cols=52 Identities=8% Similarity=0.040 Sum_probs=35.6
Q ss_pred ceeeeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 47 LKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 47 ~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
+....+++|.....--..++.+++|++|++++...+...... ..+++||++-
T Consensus 43 ~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~~~~--~~l~~GDv~~ 94 (178)
T 1dgw_A 43 VLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRDT--YKLDQGDAIK 94 (178)
T ss_dssp EEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEEEE--EEEETTEEEE
T ss_pred EEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCCcEE--EEECCCCEEE
Confidence 345678888776544445689999999999987653211122 4688999875
No 64
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=83.14 E-value=7 Score=25.04 Aligned_cols=47 Identities=11% Similarity=-0.003 Sum_probs=34.1
Q ss_pred eeeeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 48 KLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 48 ~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
....+++|..+-.--.....+++|++|.+++.. +++. ..+.+||++-
T Consensus 44 ~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~-~~~~-----~~l~~Gd~~~ 90 (126)
T 4e2g_A 44 NWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTI-GEET-----RVLRPGMAYT 90 (126)
T ss_dssp EEEEECTTCEEEEECCSSEEEEEEEEECEEEEE-TTEE-----EEECTTEEEE
T ss_pred EEEEECCCCcCCCccCCCceEEEEEEeEEEEEE-CCEE-----EEeCCCCEEE
Confidence 446788888775444556889999999999887 3321 4688999864
No 65
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=82.69 E-value=8.5 Score=26.59 Aligned_cols=46 Identities=11% Similarity=-0.027 Sum_probs=32.0
Q ss_pred eeeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 49 LVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 49 ~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
...+++|..+-.--.....+++|++|.+.+.. +++. ..+.+||++=
T Consensus 60 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i-~~~~-----~~l~~Gd~i~ 105 (167)
T 3ibm_A 60 YFEVEPGGYTTLERHEHTHVVMVVRGHAEVVL-DDRV-----EPLTPLDCVY 105 (167)
T ss_dssp EEEECTTCBCCCBBCSSCEEEEEEESEEEEEE-TTEE-----EEECTTCEEE
T ss_pred EEEECCCCCCCCccCCCcEEEEEEeCEEEEEE-CCEE-----EEECCCCEEE
Confidence 35666776654333457899999999999876 3421 4678999874
No 66
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=81.64 E-value=3.2 Score=25.86 Aligned_cols=47 Identities=13% Similarity=0.025 Sum_probs=33.2
Q ss_pred eeeeecCCCEEEec--CCc-cCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 48 KLVPYTERSILVHE--GSG-VEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 48 ~~~~~~~ge~I~~~--G~~-~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
....+++|..+-.. -.. ...+++|++|.+.+.. +++. ..+.+||++-
T Consensus 24 ~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~-~~~~-----~~l~~Gd~~~ 73 (113)
T 2gu9_A 24 AEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIV-DGHT-----QALQAGSLIA 73 (113)
T ss_dssp EEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEE-TTEE-----EEECTTEEEE
T ss_pred EEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEE-CCEE-----EEeCCCCEEE
Confidence 34678888876543 333 6789999999999887 3321 4678999874
No 67
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=80.99 E-value=1.6 Score=28.85 Aligned_cols=45 Identities=11% Similarity=0.073 Sum_probs=32.5
Q ss_pred eeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 50 VPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 50 ~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
....+|..-....+ .+.+..|++|.+.+...+|.. ..+++||.+-
T Consensus 47 We~tPG~~~~~~~~-~~E~~~iLeG~~~lt~ddG~~-----~~l~aGD~~~ 91 (116)
T 3es4_A 47 WMAEPGIYNYAGRD-LEETFVVVEGEALYSQADADP-----VKIGPGSIVS 91 (116)
T ss_dssp EEECSEEEEECCCS-EEEEEEEEECCEEEEETTCCC-----EEECTTEEEE
T ss_pred EecCCceeECeeCC-CcEEEEEEEeEEEEEeCCCeE-----EEECCCCEEE
Confidence 45666766555533 358899999999999866632 3688999885
No 68
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=80.35 E-value=2.1 Score=28.33 Aligned_cols=45 Identities=13% Similarity=0.003 Sum_probs=31.4
Q ss_pred eeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 50 VPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 50 ~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
....+|..-.+..+ .+.+++|++|.+.+...+|.. ..+++||.+-
T Consensus 54 w~~~pG~~~~~~~~-~~E~~~Vl~G~~~l~~~~g~~-----~~l~~GD~~~ 98 (123)
T 3bcw_A 54 WESTSGSFQSNTTG-YIEYCHIIEGEARLVDPDGTV-----HAVKAGDAFI 98 (123)
T ss_dssp EEEEEEEEECCCTT-EEEEEEEEEEEEEEECTTCCE-----EEEETTCEEE
T ss_pred EEECCCceeeEcCC-CcEEEEEEEEEEEEEECCCeE-----EEECCCCEEE
Confidence 45566665554333 278999999999998755532 3578999875
No 69
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=80.24 E-value=2.5 Score=26.54 Aligned_cols=69 Identities=14% Similarity=0.120 Sum_probs=40.0
Q ss_pred cCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeeecccccCccccccCCCCcceeEEEecceeEEEE
Q 038042 53 TERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCGEELLPRASVLQLGGLPISTRTVIAHTPVEAFV 132 (162)
Q Consensus 53 ~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~Ge~~l~~~~~~~~~~~~~~~~tv~a~~~~~l~~ 132 (162)
.+|+...+..+....+++|++|.+++...+++. ..+.+||++-- .. -....+.+.+++.++.
T Consensus 36 ~~g~~~~H~H~~~~E~~~Vl~G~~~~~~~~~~~-----~~l~~Gd~~~i---p~----------~~~H~~~~~~~~~~l~ 97 (107)
T 2i45_A 36 LLGDYGWHTHGYSDKVLFAVEGDMAVDFADGGS-----MTIREGEMAVV---PK----------SVSHRPRSENGCSLVL 97 (107)
T ss_dssp EEEECCCBCC--CCEEEEESSSCEEEEETTSCE-----EEECTTEEEEE---CT----------TCCEEEEEEEEEEEEE
T ss_pred CCCCCcceeCCCCCEEEEEEeCEEEEEECCCcE-----EEECCCCEEEE---CC----------CCcEeeEeCCCeEEEE
Confidence 344433333333378999999999988754232 46889998742 11 1123444557888888
Q ss_pred EeHHHHH
Q 038042 133 IEADDWK 139 (162)
Q Consensus 133 i~~~~~~ 139 (162)
++.....
T Consensus 98 i~~~~~~ 104 (107)
T 2i45_A 98 IELSDPS 104 (107)
T ss_dssp EECC---
T ss_pred EECCCcc
Confidence 8765544
No 70
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=79.79 E-value=8.2 Score=30.65 Aligned_cols=62 Identities=11% Similarity=0.026 Sum_probs=45.3
Q ss_pred CccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeeecccccCccccccCCCCcceeEEEecceeEEEEEeHHHHHHHH
Q 038042 63 SGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCGEELLPRASVLQLGGLPISTRTVIAHTPVEAFVIEADDWKQLV 142 (162)
Q Consensus 63 ~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~Ge~~l~~~~~~~~~~~~~~~~tv~a~~~~~l~~i~~~~~~~l~ 142 (162)
.....+|.|++|.-.+.. +++ . ..+++||+|--.+. ...+..+.+++.++.++-..+.+-+
T Consensus 297 ht~s~Vy~V~eG~G~~~I-~~~--~---~~w~~gD~fvvP~w-------------~~h~~~n~~~a~Lf~~~D~Pl~~~L 357 (368)
T 3nw4_A 297 EVGSTVFQVFEGAGAVVM-NGE--T---TKLEKGDMFVVPSW-------------VPWSLQAETQFDLFRFSDAPIMEAL 357 (368)
T ss_dssp ESSCEEEEEEESCEEEEE-TTE--E---EEECTTCEEEECTT-------------CCEEEEESSSEEEEEEESHHHHHHT
T ss_pred ccccEEEEEEeCcEEEEE-CCE--E---EEecCCCEEEECCC-------------CcEEEEeCCCEEEEEEeCHHHHHHh
Confidence 557789999999988776 442 2 36889999864221 2345677899999999998887755
Q ss_pred h
Q 038042 143 N 143 (162)
Q Consensus 143 ~ 143 (162)
.
T Consensus 358 G 358 (368)
T 3nw4_A 358 S 358 (368)
T ss_dssp T
T ss_pred C
Confidence 4
No 71
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=79.75 E-value=6.2 Score=31.61 Aligned_cols=76 Identities=4% Similarity=-0.114 Sum_probs=46.9
Q ss_pred eeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeeecccccCccccccCCCCcceeEEEe---cc
Q 038042 50 VPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCGEELLPRASVLQLGGLPISTRTVIA---HT 126 (162)
Q Consensus 50 ~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~Ge~~l~~~~~~~~~~~~~~~~tv~a---~~ 126 (162)
..+++|+..-.--.....+|+|++|...+.. +|+. ..+++||+|-.... ....+.. .+
T Consensus 299 ~~l~PG~~~~~HrH~~~~v~~VleG~G~~~V-~ge~-----~~~~~GD~~~iP~g-------------~~H~~~N~g~~e 359 (394)
T 3bu7_A 299 QMLRPGEHTKAHRHTGNVIYNVAKGQGYSIV-GGKR-----FDWSEHDIFCVPAW-------------TWHEHCNTQERD 359 (394)
T ss_dssp EEECTTCBCCCEEESSCEEEEEEECCEEEEE-TTEE-----EEECTTCEEEECTT-------------CCEEEEECCSSC
T ss_pred EEECCCCcCCCcccCCcEEEEEEeCeEEEEE-CCEE-----EEEeCCCEEEECCC-------------CeEEeEeCCCCC
Confidence 3445555543333456779999999985444 5532 46889999864211 1122332 46
Q ss_pred eeEEEEEeHHHHHHHHhh
Q 038042 127 PVEAFVIEADDWKQLVNS 144 (162)
Q Consensus 127 ~~~l~~i~~~~~~~l~~~ 144 (162)
++.+++++...+.+-+.-
T Consensus 360 ~~~ll~i~D~Pl~~~Lgl 377 (394)
T 3bu7_A 360 DACLFSFNDFPVMEKLGF 377 (394)
T ss_dssp CEEEEEEESHHHHHHTTC
T ss_pred CeEEEEeeCHHHHHHhhh
Confidence 889999988777765543
No 72
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=79.72 E-value=4.9 Score=24.46 Aligned_cols=47 Identities=9% Similarity=0.040 Sum_probs=31.9
Q ss_pred eeeeecCCCEEEecCCc-cCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 48 KLVPYTERSILVHEGSG-VEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 48 ~~~~~~~ge~I~~~G~~-~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
....+++|..+-.--.. ...+++|++|.+.+.. +++. ..+.+||++=
T Consensus 31 ~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~-~~~~-----~~l~~Gd~~~ 78 (105)
T 1v70_A 31 DLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRV-GEEE-----ALLAPGMAAF 78 (105)
T ss_dssp EEEEECTTCEEEEECCSSCEEEEEEEESCEEEEE-TTEE-----EEECTTCEEE
T ss_pred EEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEE-CCEE-----EEeCCCCEEE
Confidence 34577888776433333 3579999999999876 3321 4678999874
No 73
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=78.35 E-value=9.4 Score=26.27 Aligned_cols=31 Identities=10% Similarity=0.150 Sum_probs=23.9
Q ss_pred ccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 64 GVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 64 ~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
..+.+++|++|.+++.. +|.. ..+++||.+=
T Consensus 83 ~~eE~~yVLeG~~~l~i-~g~~-----~~l~~GD~i~ 113 (151)
T 4axo_A 83 NYDEIDYVIDGTLDIII-DGRK-----VSASSGELIF 113 (151)
T ss_dssp SSEEEEEEEEEEEEEEE-TTEE-----EEEETTCEEE
T ss_pred CCcEEEEEEEeEEEEEE-CCEE-----EEEcCCCEEE
Confidence 46788999999999986 5532 3688999873
No 74
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=77.69 E-value=12 Score=29.31 Aligned_cols=59 Identities=7% Similarity=-0.067 Sum_probs=41.0
Q ss_pred ccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeeecccccCccccccCCCCcceeEEEecceeEEEEEeHHHHHHH
Q 038042 64 GVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCGEELLPRASVLQLGGLPISTRTVIAHTPVEAFVIEADDWKQL 141 (162)
Q Consensus 64 ~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~Ge~~l~~~~~~~~~~~~~~~~tv~a~~~~~l~~i~~~~~~~l 141 (162)
....+|+|++|+.++.. ++++ ..+++||+|--... ....+.+.+++.++++.-..+.+-
T Consensus 287 ~~~ev~~v~~G~g~~~v-~~~~-----~~~~~GD~~~vP~~-------------~~H~~~n~e~~~l~~~~d~p~~~~ 345 (354)
T 2d40_A 287 TDSTIYHVVEGSGQVII-GNET-----FSFSAKDIFVVPTW-------------HGVSFQTTQDSVLFSFSDRPVQEA 345 (354)
T ss_dssp SSCEEEEEEEEEEEEEE-TTEE-----EEEETTCEEEECTT-------------CCEEEEEEEEEEEEEEESHHHHHH
T ss_pred CCcEEEEEEeCeEEEEE-CCEE-----EEEcCCCEEEECCC-------------CeEEEEeCCCEEEEEEcCHHHHHH
Confidence 45689999999998887 4422 46889999853211 124455568999999977766553
No 75
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=77.31 E-value=3.3 Score=29.28 Aligned_cols=45 Identities=11% Similarity=-0.006 Sum_probs=29.9
Q ss_pred eeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCee
Q 038042 50 VPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFC 99 (162)
Q Consensus 50 ~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~ 99 (162)
..+++|...-.--.....+++|++|++++...++.. ..+++||.+
T Consensus 84 v~l~PG~~~~~H~H~~eE~~~VLeGel~l~ld~ge~-----~~L~~GDsi 128 (172)
T 3es1_A 84 VDMLPGKESPMHRTNSIDYGIVLEGEIELELDDGAK-----RTVRQGGII 128 (172)
T ss_dssp EEECTTCBCCCBCCSEEEEEEEEESCEEEECGGGCE-----EEECTTCEE
T ss_pred EEECCCCCCCCeecCceEEEEEEeCEEEEEECCCeE-----EEECCCCEE
Confidence 556666543222233456889999999998754532 468899997
No 76
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=76.22 E-value=1.7 Score=26.98 Aligned_cols=48 Identities=6% Similarity=-0.040 Sum_probs=30.7
Q ss_pred eeeecCCCEEEecCCccC-eEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 49 LVPYTERSILVHEGSGVE-KMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 49 ~~~~~~ge~I~~~G~~~~-~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
...+++|...-.--.... .+++|++|.+++...++.. ...+.+||.+-
T Consensus 22 ~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~g~~----~~~l~~Gd~~~ 70 (97)
T 2fqp_A 22 EWRFPPGGETGWHRHSMDYVVVPMTTGPLLLETPEGSV----TSQLTRGVSYT 70 (97)
T ss_dssp EEEECTTCBCCSEECCSCEEEEESSCEEEEEEETTEEE----EEEECTTCCEE
T ss_pred EEEECCCCCCCCEECCCCcEEEEEeecEEEEEeCCCCE----EEEEcCCCEEE
Confidence 356777765422222333 5999999999998755311 14688999874
No 77
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=75.83 E-value=2.2 Score=34.26 Aligned_cols=49 Identities=8% Similarity=-0.044 Sum_probs=34.6
Q ss_pred eeeeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeeec
Q 038042 48 KLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCGE 101 (162)
Q Consensus 48 ~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~Ge 101 (162)
....+++|+.+-.--.....+|+|++|....+..+|+. ..+++||++-.
T Consensus 126 ~~~~l~PG~~~~~HrH~~~ev~~IleG~G~~t~v~G~~-----~~~~~GD~i~~ 174 (394)
T 3bu7_A 126 GIQTMKAGERAGAHRHAASALRFIMEGSGAYTIVDGHK-----VELGANDFVLT 174 (394)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEECSCEEEEETTEE-----EEECTTCEEEE
T ss_pred EEEEECCCCCcCCccCCcceEEEEEEeeEEEEEECCEE-----EEEcCCCEEEE
Confidence 45677888777544445668999999987665666632 35789998853
No 78
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=75.75 E-value=7.5 Score=28.54 Aligned_cols=46 Identities=9% Similarity=-0.078 Sum_probs=30.9
Q ss_pred eeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 50 VPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 50 ~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
..+.+|..+-.=..+.+.+|+|++|.++....++.. ..+++|+++=
T Consensus 137 v~l~PG~~yP~HsHp~EEiy~VLsG~~e~~v~~g~~-----~~l~pGd~v~ 182 (217)
T 4b29_A 137 GYWGPGLDYGWHEHLPEELYSVVSGRALFHLRNAPD-----LMLEPGQTRF 182 (217)
T ss_dssp EEECSSCEEEEEECSSEEEEEEEEECEEEEETTSCC-----EEECTTCEEE
T ss_pred EEECCCCcCCCCCCCCceEEEEEeCCEEEEECCCCE-----EecCCCCEEE
Confidence 344455443333356889999999999988854432 3578999874
No 79
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=75.61 E-value=16 Score=24.84 Aligned_cols=65 Identities=9% Similarity=0.121 Sum_probs=41.5
Q ss_pred EecCCccCeEEEEEeeEEEEeeecC--CceeeeeeeeCCCCeeecccccCccccccCCCCcceeEEEecceeEEEEEeHH
Q 038042 59 VHEGSGVEKMFFIVRGKIWSEPTTI--RTTTFSFNASNDGHFCGEELLPRASVLQLGGLPISTRTVIAHTPVEAFVIEAD 136 (162)
Q Consensus 59 ~~~G~~~~~ly~I~~G~v~v~~~~~--~~~~~~~~~~~~G~~~Ge~~l~~~~~~~~~~~~~~~~tv~a~~~~~l~~i~~~ 136 (162)
++.-+..+.+++|++|.+.+...++ .......-.++||+++=- +. ---.+-.|.++|.++-+...
T Consensus 44 ~h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~yvV---Pk----------GveH~p~a~~e~~vLLiEp~ 110 (140)
T 3d0j_A 44 LEIHHSTDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVYNV---PA----------ECWFYSITQKDTKMMYVQDS 110 (140)
T ss_dssp EEEESSCCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCEEE---CT----------TCEEEEEECTTCEEEEEEES
T ss_pred hccCCCCCeEEEEEecEEEEEEecCcCCCCccceEEecCCCEEEe---CC----------CccCcccCCCceEEEEEEeC
Confidence 4455667999999999999986632 100011136899998852 11 11234566788888888765
No 80
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=75.52 E-value=9 Score=23.28 Aligned_cols=52 Identities=13% Similarity=0.222 Sum_probs=34.0
Q ss_pred cCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeeecccccCccccccCCCCcceeEEEecceeEEEEEeH
Q 038042 65 VEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCGEELLPRASVLQLGGLPISTRTVIAHTPVEAFVIEA 135 (162)
Q Consensus 65 ~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~Ge~~l~~~~~~~~~~~~~~~~tv~a~~~~~l~~i~~ 135 (162)
...+++|++|.+.+... ++. ..+.+||++-- . + -....+.+.+++.++.++.
T Consensus 50 ~~e~~~v~~G~~~~~~~-~~~-----~~l~~Gd~~~i---p-~---------~~~H~~~~~~~~~~l~i~~ 101 (102)
T 3d82_A 50 TDEVFIVMEGTLQIAFR-DQN-----ITLQAGEMYVI---P-K---------GVEHKPMAKEECKIMIIEP 101 (102)
T ss_dssp CCEEEEEEESEEEEECS-SCE-----EEEETTEEEEE---C-T---------TCCBEEEEEEEEEEEEEEE
T ss_pred CcEEEEEEeCEEEEEEC-CEE-----EEEcCCCEEEE---C-C---------CCeEeeEcCCCCEEEEEEc
Confidence 37899999999998763 322 35779997632 1 1 1123455557888887753
No 81
>2q1z_B Anti-sigma factor CHRR, transcriptional activator; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_B
Probab=75.44 E-value=9.9 Score=27.08 Aligned_cols=65 Identities=9% Similarity=0.086 Sum_probs=45.4
Q ss_pred hceeeeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeeecccccCccccccCCCCcceeEEEe-
Q 038042 46 LLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCGEELLPRASVLQLGGLPISTRTVIA- 124 (162)
Q Consensus 46 ~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~Ge~~l~~~~~~~~~~~~~~~~tv~a- 124 (162)
.....++++|..+-.-......+.+|++|..+ |.. ..+.+||++=.. . -...+..+
T Consensus 126 ~v~l~~~~pG~~~p~H~H~g~E~~~VL~G~f~----de~------~~~~~Gd~~~~p---~----------g~~H~p~a~ 182 (195)
T 2q1z_B 126 IARLLWIPGGQAVPDHGHRGLELTLVLQGAFR----DET------DRFGAGDIEIAD---Q----------ELEHTPVAE 182 (195)
T ss_dssp EEEEEEECTTCBCCCCCCSSCEEEEEEESEEE----CSS------SEEETTCEEEEC---S----------SCCCCCEEC
T ss_pred EEEEEEECCCCCCCCcCCCCeEEEEEEEEEEE----CCc------EEECCCeEEEeC---c----------CCccCCEeC
Confidence 34568899999998888888999999999865 321 346789987421 1 12344555
Q ss_pred -cceeEEEEE
Q 038042 125 -HTPVEAFVI 133 (162)
Q Consensus 125 -~~~~~l~~i 133 (162)
.++|.+|.+
T Consensus 183 ~~~gc~~l~~ 192 (195)
T 2q1z_B 183 RGLDCICLAA 192 (195)
T ss_dssp SSSCEEEEEE
T ss_pred CCCCEEEEEE
Confidence 678888765
No 82
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=74.57 E-value=4.7 Score=28.61 Aligned_cols=85 Identities=18% Similarity=0.287 Sum_probs=49.6
Q ss_pred HHHHHHHHhhcee----e-eecCCCEEEe-cCC----------ccCeEEEEEeeEEEEeeec-CCceeeeeeeeCCCCee
Q 038042 37 EHFLNAMLDLLKL----V-PYTERSILVH-EGS----------GVEKMFFIVRGKIWSEPTT-IRTTTFSFNASNDGHFC 99 (162)
Q Consensus 37 ~~~l~~l~~~~~~----~-~~~~ge~I~~-~G~----------~~~~ly~I~~G~v~v~~~~-~~~~~~~~~~~~~G~~~ 99 (162)
.+.++.+.+..++ + .+..+++++. -|. +.+.++++++|.+.+-..| |+... -.+++||+|
T Consensus 11 ~~~l~~~~~~~~PpV~n~~v~nd~~~~V~~v~Gpn~r~d~H~h~~dE~FyvlkG~m~i~v~d~g~~~~---v~l~eGE~f 87 (174)
T 1yfu_A 11 PRWIDEHAHLLKPPVGNRQVWQDSDFIVTVVGGPNHRTDYHDDPLEEFFYQLRGNAYLNLWVDGRRER---ADLKEGDIF 87 (174)
T ss_dssp HHHHHHTGGGSSTTTCEEESSSSCSEEEEEECSCBCCCCEEECSSCEEEEEEESCEEEEEEETTEEEE---EEECTTCEE
T ss_pred HHHHHHhhhhcCCCcCCEEEEcCCcEEEEEEcCCCcCccCcCCCCceEEEEEeeEEEEEEEcCCceee---EEECCCCEE
Confidence 4556666666665 2 2333455433 222 3578999999999998776 32222 368999998
Q ss_pred ecccccCccccccCCCCcceeEEEecc-eeEEEEEeHHH
Q 038042 100 GEELLPRASVLQLGGLPISTRTVIAHT-PVEAFVIEADD 137 (162)
Q Consensus 100 Ge~~l~~~~~~~~~~~~~~~~tv~a~~-~~~l~~i~~~~ 137 (162)
=. .. +. ..+-.+-+ ++..+.+.+..
T Consensus 88 ~l---P~-------gv---pH~P~r~~~e~~~lviE~~r 113 (174)
T 1yfu_A 88 LL---PP-------HV---RHSPQRPEAGSACLVIERQR 113 (174)
T ss_dssp EE---CT-------TC---CEEEEBCCTTCEEEEEEECC
T ss_pred Ee---CC-------CC---CcCccccCCCCEEEEEEeCC
Confidence 53 11 11 12334455 67777766543
No 83
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=73.62 E-value=17 Score=24.23 Aligned_cols=47 Identities=11% Similarity=0.104 Sum_probs=31.8
Q ss_pred eeeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 49 LVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 49 ~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
...+++|..+-.--.....+++|++|.+.+... ++. ...+.+||++-
T Consensus 52 ~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~-~~~----~~~l~~Gd~i~ 98 (147)
T 2f4p_A 52 DVVFEPGARTHWHSHPGGQILIVTRGKGFYQER-GKP----ARILKKGDVVE 98 (147)
T ss_dssp EEEECTTCEECSEECTTCEEEEEEEEEEEEEET-TSC----CEEEETTCEEE
T ss_pred EEEECCCCccCceECCCceEEEEEeCEEEEEEC-CEE----EEEECCCCEEE
Confidence 466778876633333457899999999998874 321 02577999874
No 84
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=73.46 E-value=17 Score=24.08 Aligned_cols=44 Identities=7% Similarity=0.099 Sum_probs=30.4
Q ss_pred eeeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 49 LVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 49 ~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
...+.+|..-.. ...+.+++|++|.+++... |+. ..+++||.+-
T Consensus 61 ~~~~~pG~~~~h--~~~~E~~~VLeG~~~l~~~-g~~-----~~l~~GD~i~ 104 (133)
T 2pyt_A 61 FMQWDNAFFPWT--LNYDEIDMVLEGELHVRHE-GET-----MIAKAGDVMF 104 (133)
T ss_dssp EEEEEEEEEEEE--CSSEEEEEEEEEEEEEEET-TEE-----EEEETTCEEE
T ss_pred EEEECCCCcccc--CCCCEEEEEEECEEEEEEC-CEE-----EEECCCcEEE
Confidence 356777743222 2467899999999998873 522 3688999875
No 85
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=73.39 E-value=6 Score=25.10 Aligned_cols=45 Identities=9% Similarity=0.082 Sum_probs=29.1
Q ss_pred eeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeee-eeCCCCeee
Q 038042 50 VPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFN-ASNDGHFCG 100 (162)
Q Consensus 50 ~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~-~~~~G~~~G 100 (162)
..+++|...-.--.....+++|++|.+.+... ++. . .+.+||++=
T Consensus 32 ~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~-~~~-----~~~l~~Gd~i~ 77 (117)
T 2b8m_A 32 IVLPRGEQMPKHYSNSYVHLIIIKGEMTLTLE-DQE-----PHNYKEGNIVY 77 (117)
T ss_dssp EEEETTCBCCCEECSSCEEEEEEESEEEEEET-TSC-----CEEEETTCEEE
T ss_pred EEECCCCcCCCEeCCCcEEEEEEeCEEEEEEC-CEE-----EEEeCCCCEEE
Confidence 45566665422223456789999999998874 322 3 577999874
No 86
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=71.91 E-value=16 Score=25.92 Aligned_cols=52 Identities=8% Similarity=0.067 Sum_probs=34.3
Q ss_pred eeeeecCCCEEE-ecCCccCeEEEEEeeEEEEeeecCC---ceeeeeeeeCCCCeee
Q 038042 48 KLVPYTERSILV-HEGSGVEKMFFIVRGKIWSEPTTIR---TTTFSFNASNDGHFCG 100 (162)
Q Consensus 48 ~~~~~~~ge~I~-~~G~~~~~ly~I~~G~v~v~~~~~~---~~~~~~~~~~~G~~~G 100 (162)
....+.+|...- +-......+++|++|.+++...++. ...+ ...+.+||++-
T Consensus 75 ~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~~-~~~l~~GD~~~ 130 (201)
T 1fi2_A 75 NRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLY-SRVVRAGETFV 130 (201)
T ss_dssp EEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCEE-EEEEETTCEEE
T ss_pred EEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeEE-EEEECCCCEEE
Confidence 446788887653 2233357999999999998775431 1211 24688999874
No 87
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=70.84 E-value=6.7 Score=31.57 Aligned_cols=52 Identities=10% Similarity=0.120 Sum_probs=37.1
Q ss_pred ceeeeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 47 LKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 47 ~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
+....+++|..+..--..++.+++|++|++.+...+..... ...+++||++-
T Consensus 51 ~~~~~l~PGg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~--~~~l~~GDv~~ 102 (416)
T 1uij_A 51 IVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRD--SYNLHPGDAQR 102 (416)
T ss_dssp EEEEEECTTEEEEEEEESEEEEEEEEESCEEEEEECSSCEE--EEEECTTEEEE
T ss_pred EEEEEeccCcCcccccCCCceEEEEEeeEEEEEEEECCCCe--EEEecCCCEEE
Confidence 34578889887755566788999999999998765321111 24688999874
No 88
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=70.63 E-value=7.1 Score=31.62 Aligned_cols=52 Identities=8% Similarity=0.084 Sum_probs=37.8
Q ss_pred ceeeeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 47 LKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 47 ~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
+....+++|..+..--..++.+++|++|++.+...+..... ...+++||++-
T Consensus 63 ~~~~~l~PGg~~~pHh~~a~Ei~yVl~G~g~v~~v~~~~~~--~~~l~~GDv~~ 114 (434)
T 2ea7_A 63 VVEFKSKPNTLLLPHHADADFLLVVLNGTAVLTLVNPDSRD--SYILEQGHAQK 114 (434)
T ss_dssp EEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSCEE--EEEEETTEEEE
T ss_pred EEEEEecCCcCccCccCCCceEEEEEecEEEEEEEeCCCCE--EEEeCCCCEEE
Confidence 44588899988866666688999999999998765321111 24688999875
No 89
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=70.29 E-value=9 Score=25.13 Aligned_cols=46 Identities=11% Similarity=0.081 Sum_probs=31.3
Q ss_pred eeeecCCCEEEecCCc-cCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 49 LVPYTERSILVHEGSG-VEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 49 ~~~~~~ge~I~~~G~~-~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
...+++|..+-.--.. ...+++|++|.+.+.. +++. ..+.+||++-
T Consensus 61 ~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i-~~~~-----~~l~~Gd~i~ 107 (133)
T 1o4t_A 61 RMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHD-NGKD-----VPIKAGDVCF 107 (133)
T ss_dssp EEEECTTCEEEEEECCSEEEEEEEEESEEEEEE-TTEE-----EEEETTEEEE
T ss_pred EEEECCCCccCceECCCccEEEEEEeCEEEEEE-CCEE-----EEeCCCcEEE
Confidence 4577888766332222 4689999999999876 3421 3578999874
No 90
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=70.29 E-value=12 Score=27.38 Aligned_cols=45 Identities=9% Similarity=-0.152 Sum_probs=32.4
Q ss_pred eeecC-CCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 50 VPYTE-RSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 50 ~~~~~-ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
..+++ |..+-.--.....+++|++|.+++... ++ . ..+.+||.+-
T Consensus 150 ~~~~p~g~~~~~H~H~~~e~~~Vl~G~~~~~i~-~~--~---~~l~~Gd~i~ 195 (243)
T 3h7j_A 150 AKIPGNGGEMPFHKHRNEQIGICIGGGYDMTVE-GC--T---VEMKFGTAYF 195 (243)
T ss_dssp EEECTTTEEEEEECCSSEEEEEECSSCEEEEET-TE--E---EEECTTCEEE
T ss_pred EEECCCCCcCCCEeCCCcEEEEEEECEEEEEEC-CE--E---EEECCCCEEE
Confidence 45778 776654445567899999999998874 32 1 3588999874
No 91
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=70.21 E-value=10 Score=26.52 Aligned_cols=31 Identities=13% Similarity=0.056 Sum_probs=23.8
Q ss_pred ccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 64 GVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 64 ~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
..+.+++|++|.+++... ++. ..+.+||.+=
T Consensus 109 ~gEE~~yVLeG~v~vtl~-g~~-----~~L~~Gds~~ 139 (166)
T 2vpv_A 109 RTYITFHVIQGIVEVTVC-KNK-----FLSVKGSTFQ 139 (166)
T ss_dssp SEEEEEEEEESEEEEEET-TEE-----EEEETTCEEE
T ss_pred CceEEEEEEEeEEEEEEC-CEE-----EEEcCCCEEE
Confidence 467899999999999883 421 4678999874
No 92
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=70.16 E-value=5.5 Score=27.35 Aligned_cols=45 Identities=13% Similarity=-0.005 Sum_probs=30.2
Q ss_pred eeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 50 VPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 50 ~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
..+++|...-.--.....+++|++|.+++.. +++. ..+.+||++=
T Consensus 49 ~~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v-~g~~-----~~l~~Gd~i~ 93 (156)
T 3kgz_A 49 FEVDEGGYSTLERHAHVHAVMIHRGHGQCLV-GETI-----SDVAQGDLVF 93 (156)
T ss_dssp EEEEEEEECCCBBCSSCEEEEEEEEEEEEEE-TTEE-----EEEETTCEEE
T ss_pred EEECCCCccCceeCCCcEEEEEEeCEEEEEE-CCEE-----EEeCCCCEEE
Confidence 4456666553333456788999999999886 4421 4578999773
No 93
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=70.15 E-value=24 Score=24.44 Aligned_cols=49 Identities=12% Similarity=0.033 Sum_probs=31.4
Q ss_pred eeecCCCEEEe---cCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 50 VPYTERSILVH---EGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 50 ~~~~~ge~I~~---~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
..+++|...-. -......+++|++|.+++...++.... ...+++||.+-
T Consensus 122 ~~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~~~~~~~~--~~~l~~GD~~~ 173 (198)
T 2bnm_A 122 VDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENPK--EALLPTGASMF 173 (198)
T ss_dssp EEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTSCE--EEEECTTCEEE
T ss_pred EEEcCCCCCcccccccCCCeEEEEEEeeeEEEEECCcCCcc--cEEECCCCEEE
Confidence 46677765431 223446899999999999885421111 14689999874
No 94
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=69.89 E-value=17 Score=27.46 Aligned_cols=69 Identities=16% Similarity=0.149 Sum_probs=43.8
Q ss_pred eeeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeeecccccCccccccCCCCcceeEEEeccee
Q 038042 49 LVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCGEELLPRASVLQLGGLPISTRTVIAHTPV 128 (162)
Q Consensus 49 ~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~Ge~~l~~~~~~~~~~~~~~~~tv~a~~~~ 128 (162)
...+++|..--......+.+.+|++|++++...+|+. ..+++||.+=- .. ....++...+++
T Consensus 74 lv~l~PGg~s~~~~h~~EEfiyVleG~l~l~l~~g~~-----~~L~~Gds~y~---p~----------~~~H~~~N~~~A 135 (266)
T 4e2q_A 74 LAKMKEMSSSGLPPQDIERLIFVVEGAVTLTNTSSSS-----KKLTVDSYAYL---PP----------NFHHSLDCVESA 135 (266)
T ss_dssp EEEECSSEECCCCCTTEEEEEEEEEECEEEEC--CCC-----EEECTTEEEEE---CT----------TCCCEEEESSCE
T ss_pred EEEECcCCcCCCCCCCCeEEEEEEEEEEEEEECCCcE-----EEEcCCCEEEE---CC----------CCCEEEEeCCCE
Confidence 4667777654223345789999999999998853532 46789987732 11 122345556788
Q ss_pred EEEEEeH
Q 038042 129 EAFVIEA 135 (162)
Q Consensus 129 ~l~~i~~ 135 (162)
+++.+.+
T Consensus 136 r~l~V~k 142 (266)
T 4e2q_A 136 TLVVFER 142 (266)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 8887754
No 95
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=69.82 E-value=5.2 Score=27.79 Aligned_cols=45 Identities=9% Similarity=-0.052 Sum_probs=30.6
Q ss_pred eeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 50 VPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 50 ~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
..+++|..+-.--.....+++|++|.+++.. +++. ..+.+||++=
T Consensus 58 ~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v-~g~~-----~~l~~GD~i~ 102 (166)
T 3jzv_A 58 FEVGPGGHSTLERHQHAHGVMILKGRGHAMV-GRAV-----SAVAPYDLVT 102 (166)
T ss_dssp EEEEEEEECCCBBCSSCEEEEEEEECEEEEE-TTEE-----EEECTTCEEE
T ss_pred EEECCCCccCceeCCCcEEEEEEeCEEEEEE-CCEE-----EEeCCCCEEE
Confidence 4556666553333456788999999999876 4421 4678999874
No 96
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=69.56 E-value=8 Score=28.49 Aligned_cols=48 Identities=10% Similarity=0.068 Sum_probs=35.8
Q ss_pred ceeeeecCCCEEEe-cCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 47 LKLVPYTERSILVH-EGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 47 ~~~~~~~~ge~I~~-~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
+...++++|..+-. .-...++.++|++|++.+.. +++. ..+++||++-
T Consensus 167 ~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~-~~~~-----~~l~~GD~~~ 215 (246)
T 1sfn_A 167 VSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKL-EENY-----YPVTAGDIIW 215 (246)
T ss_dssp EEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEE-TTEE-----EEEETTCEEE
T ss_pred EEEEEECCCCccCcccCCCceEEEEEEECEEEEEE-CCEE-----EEcCCCCEEE
Confidence 34578899987753 45667899999999998887 4422 3678999874
No 97
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=69.32 E-value=14 Score=28.82 Aligned_cols=47 Identities=19% Similarity=0.137 Sum_probs=33.5
Q ss_pred eeeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 49 LVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 49 ~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
...+++|+..-.--.....+++|++|...+...+++. ..+++||++=
T Consensus 104 ~~~l~PG~~~~~H~H~~~e~~yVl~G~g~~t~v~g~~-----~~l~~GD~~~ 150 (354)
T 2d40_A 104 LQLIMPGEVAPSHRHNQSALRFIVEGKGAFTAVDGER-----TPMNEGDFIL 150 (354)
T ss_dssp EEEECTTCEEEEEEESSCEEEEEEECSSCEEEETTEE-----EECCTTCEEE
T ss_pred EEEECCCCCcCCeecCcceEEEEEEEEEEEEEECCEE-----EEEcCCCEEE
Confidence 4677888776433335679999999998775556631 4688999885
No 98
>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A
Probab=69.28 E-value=20 Score=29.89 Aligned_cols=54 Identities=7% Similarity=0.088 Sum_probs=37.5
Q ss_pred hceeeeecCCCEEEe-cCCccCeEEEEEeeEEEEeeecCC-ceeeeeeeeCCCCeee
Q 038042 46 LLKLVPYTERSILVH-EGSGVEKMFFIVRGKIWSEPTTIR-TTTFSFNASNDGHFCG 100 (162)
Q Consensus 46 ~~~~~~~~~ge~I~~-~G~~~~~ly~I~~G~v~v~~~~~~-~~~~~~~~~~~G~~~G 100 (162)
.+....+.+|.++-. -.-.+..+.+|++|.+++...+.. ...+ ...+.+||+|=
T Consensus 395 S~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~G~~v~-~~~L~~GDV~v 450 (531)
T 3fz3_A 395 SAERGFFYRNGIYSPHWNVNAHSVVYVIRGNARVQVVNENGDAIL-DQEVQQGQLFI 450 (531)
T ss_dssp EEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEE-EEEEETTCEEE
T ss_pred eEEEEEeecCccccceEcCCCCEEEEEEeCcEEEEEEeCCCcEEE-EEEecCCeEEE
Confidence 345688889888732 223478999999999998876432 1223 25789999984
No 99
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=69.04 E-value=17 Score=22.26 Aligned_cols=67 Identities=10% Similarity=0.036 Sum_probs=40.5
Q ss_pred eeeecCCCEEEecCCcc-CeE-EEEEeeEEEEeeecCCceeeeeeeeCCCCeeecccccCccccccCCCCcceeEEEecc
Q 038042 49 LVPYTERSILVHEGSGV-EKM-FFIVRGKIWSEPTTIRTTTFSFNASNDGHFCGEELLPRASVLQLGGLPISTRTVIAHT 126 (162)
Q Consensus 49 ~~~~~~ge~I~~~G~~~-~~l-y~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~Ge~~l~~~~~~~~~~~~~~~~tv~a~~ 126 (162)
...+++|..+-.--... ..+ ++|++|.+++...+++. ..+.+||++--. . .....+.+.+
T Consensus 37 ~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~~~~~~-----~~l~~Gd~~~ip---~----------~~~H~~~~~~ 98 (110)
T 2q30_A 37 SFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVGDGDAV-----IPAPRGAVLVAP---I----------STPHGVRAVT 98 (110)
T ss_dssp EEEECTTCEEEEECCSSSCEEEEEEEESCEEEECGGGCE-----EEECTTEEEEEE---T----------TSCEEEEESS
T ss_pred EEEECCCCcCCcccCCCCccEEEEEEeCEEEEEeCCCEE-----EEECCCCEEEeC---C----------CCcEEEEEcC
Confidence 35678887764333332 456 79999999987743432 467899977421 1 1224566667
Q ss_pred eeEEEEE
Q 038042 127 PVEAFVI 133 (162)
Q Consensus 127 ~~~l~~i 133 (162)
++.++.+
T Consensus 99 ~~~~l~~ 105 (110)
T 2q30_A 99 DMKVLVT 105 (110)
T ss_dssp SEEEEEE
T ss_pred CcEEEEE
Confidence 7665543
No 100
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=68.87 E-value=7.2 Score=25.27 Aligned_cols=46 Identities=13% Similarity=0.222 Sum_probs=30.7
Q ss_pred eeeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 49 LVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 49 ~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
...+++|...-.--.....+++|++|.+++... ++. ..+.+||++=
T Consensus 52 ~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~-~~~-----~~l~~Gd~i~ 97 (126)
T 1vj2_A 52 LFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLKE-QGE-----ETVEEGFYIF 97 (126)
T ss_dssp EEEEEEEEEEEEECCSSCEEEEEEESEEEEECS-SCE-----EEEETTEEEE
T ss_pred EEEECCCCcCCceeCCCcEEEEEEEeEEEEEEC-CEE-----EEECCCCEEE
Confidence 355666665533333467899999999998773 322 3577998874
No 101
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=68.54 E-value=5.1 Score=31.82 Aligned_cols=48 Identities=10% Similarity=0.002 Sum_probs=35.0
Q ss_pred eeeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeeec
Q 038042 49 LVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCGE 101 (162)
Q Consensus 49 ~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~Ge 101 (162)
...+.+|+.+-.--...+.+|+|++|.-..+..||.. ..+++||++=.
T Consensus 107 ~~~l~PG~~~~~HrH~~~ev~~VleG~G~~~~vdG~~-----~~~~~GD~v~i 154 (368)
T 3nw4_A 107 IQYLGPRETAPEHRHSQNAFRFVVEGEGVWTVVNGDP-----VRMSRGDLLLT 154 (368)
T ss_dssp EEEECTTCEEEEEEESSCEEEECSSCEEEEEEETTEE-----EEEETTCEEEE
T ss_pred EEEECCCCccCceecccceEEEEEecceEEEEECCEE-----EEEeCCCEEEE
Confidence 4678888877655556789999999997545557732 35789998853
No 102
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=68.28 E-value=7.9 Score=31.47 Aligned_cols=51 Identities=8% Similarity=0.029 Sum_probs=36.3
Q ss_pred eeeeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 48 KLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 48 ~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
....+++|..+..--..++.+++|++|++.+...+..... ...+++||++-
T Consensus 89 ~~~~l~Pgg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~--~~~l~~GDv~~ 139 (445)
T 2cav_A 89 LEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRD--TYKLDQGDAIK 139 (445)
T ss_dssp EEEEECSSEEEEEEEESSEEEEEEEESEEEEEEEETTEEE--EEEEETTEEEE
T ss_pred EEEEECCCcCccCcCCCCceEEEEEeCEEEEEEEeCCCCE--EEEecCCCEEE
Confidence 3468888877755555678999999999988765321111 25688999875
No 103
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=67.77 E-value=22 Score=29.28 Aligned_cols=58 Identities=12% Similarity=0.113 Sum_probs=37.7
Q ss_pred HHHhhceeeeecCCCEEEe-cCCccCeEEEEEeeEEEEeeecCC-ceeeeeeeeCCCCeee
Q 038042 42 AMLDLLKLVPYTERSILVH-EGSGVEKMFFIVRGKIWSEPTTIR-TTTFSFNASNDGHFCG 100 (162)
Q Consensus 42 ~l~~~~~~~~~~~ge~I~~-~G~~~~~ly~I~~G~v~v~~~~~~-~~~~~~~~~~~G~~~G 100 (162)
.+--.+....+.+|..+-. -...+..+++|++|.+++...+.. ...+. ..+++||++=
T Consensus 364 ~lgls~a~v~l~pG~~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~g~~~~~-~~l~~GDv~v 423 (493)
T 2d5f_A 364 QFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNAQGNAVFD-GELRRGQLLV 423 (493)
T ss_dssp HHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEE-EEEETTCEEE
T ss_pred ccceEEEEEEccCCceeeeeECCCCCEEEEEEeceEEEEEEcCCCCEEEe-EEEcCCCEEE
Confidence 3333455677888876532 223468999999999999876432 22221 4689999884
No 104
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=67.55 E-value=6.3 Score=26.74 Aligned_cols=46 Identities=17% Similarity=0.147 Sum_probs=30.5
Q ss_pred eeeecCCCE-E-EecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 49 LVPYTERSI-L-VHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 49 ~~~~~~ge~-I-~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
...+++|.. . .+.-.....+++|++|.+.+.. +++. ..+++||++-
T Consensus 50 ~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~-~~~~-----~~l~~Gd~i~ 97 (162)
T 3l2h_A 50 LIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTM-ENDQ-----YPIAPGDFVG 97 (162)
T ss_dssp EEEECTTCBSSSSBEESSCCEEEEEEESCEEEEE-TTEE-----EEECTTCEEE
T ss_pred EEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEE-CCEE-----EEeCCCCEEE
Confidence 356677763 2 2222246789999999999886 3421 4688999873
No 105
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=67.21 E-value=8.6 Score=24.69 Aligned_cols=46 Identities=13% Similarity=0.101 Sum_probs=29.2
Q ss_pred eeeecCCCEEE--ecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 49 LVPYTERSILV--HEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 49 ~~~~~~ge~I~--~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
...+++|..+- ..-+..+.+|+|++|.+.+.. +++. ..+.+||++=
T Consensus 30 ~~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i-~~~~-----~~l~~Gd~i~ 77 (125)
T 3cew_A 30 INHLPAGAGVPFVHSHKQNEEIYGILSGKGFITI-DGEK-----IELQAGDWLR 77 (125)
T ss_dssp EEEECTTCBCSSEEEESSEEEEEEEEEEEEEEEE-TTEE-----EEEETTEEEE
T ss_pred EEEECCCCCCCCCccCCCceEEEEEEeCEEEEEE-CCEE-----EEeCCCCEEE
Confidence 35667776542 233333457779999999877 3421 3578999874
No 106
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=67.15 E-value=11 Score=27.61 Aligned_cols=47 Identities=6% Similarity=-0.066 Sum_probs=34.2
Q ss_pred ceeeeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCee
Q 038042 47 LKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFC 99 (162)
Q Consensus 47 ~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~ 99 (162)
+....+++|..+-.--.....+++|++|.+++.. ++.. ..+.+||.+
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~~-~~~~-----~~l~~Gd~i 82 (243)
T 3h7j_A 36 VLMSYVPPHTNVEPHQHKEVQIGMVVSGELMMTV-GDVT-----RKMTALESA 82 (243)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEESEEEEEE-TTEE-----EEEETTTCE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEEeEEEEEE-CCEE-----EEECCCCEE
Confidence 3445688998876555667889999999999887 4422 467899843
No 107
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=66.89 E-value=22 Score=22.64 Aligned_cols=77 Identities=8% Similarity=0.076 Sum_probs=45.5
Q ss_pred eeeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeeecccccCccccccCCCCcceeEEEe--cc
Q 038042 49 LVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCGEELLPRASVLQLGGLPISTRTVIA--HT 126 (162)
Q Consensus 49 ~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~Ge~~l~~~~~~~~~~~~~~~~tv~a--~~ 126 (162)
...+++|...-.--.....+++|++|.+.+.. +++. ..+++||++=- . + +. + ..+.+ .+
T Consensus 38 ~~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i-~~~~-----~~l~~Gd~~~i---~-~------~~-~--H~~~~~~~~ 98 (128)
T 4i4a_A 38 WCIVRPETKSFRHSHNEYELFIVIQGNAIIRI-NDED-----FPVTKGDLIII---P-L------DS-E--HHVINNNQE 98 (128)
T ss_dssp EEEECTTEECCCBCCSSEEEEEEEESEEEEEE-TTEE-----EEEETTCEEEE---C-T------TC-C--EEEEECSSS
T ss_pred EEEECCCCccCCEecCCeEEEEEEeCEEEEEE-CCEE-----EEECCCcEEEE---C-C------CC-c--EEeEeCCCC
Confidence 35566766443333356789999999999887 3421 35789998742 1 1 11 2 23333 34
Q ss_pred eeE--EEEEeHHHHHHHHhh
Q 038042 127 PVE--AFVIEADDWKQLVNS 144 (162)
Q Consensus 127 ~~~--l~~i~~~~~~~l~~~ 144 (162)
+++ .+.++.+-+..++.+
T Consensus 99 ~~~~~~i~f~~~~~~~~~~~ 118 (128)
T 4i4a_A 99 DFHFYTIWWDKESTLNFLTR 118 (128)
T ss_dssp CEEEEEEEECHHHHHHHHHH
T ss_pred CEEEEEEEECHHHHHHHHHh
Confidence 444 456677777776655
No 108
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=66.59 E-value=6.3 Score=27.09 Aligned_cols=46 Identities=11% Similarity=0.088 Sum_probs=30.6
Q ss_pred eeeecCCCEE--EecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 49 LVPYTERSIL--VHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 49 ~~~~~~ge~I--~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
...+++|... .+.....+.+++|++|.+++... ++. ..+++||++-
T Consensus 47 ~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~~-~~~-----~~l~~GD~i~ 94 (163)
T 3i7d_A 47 LVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVDD-QGE-----HPMVPGDCAA 94 (163)
T ss_dssp EEEECTTCBSSSSEEESSCCEEEEEEESCEEEEET-TEE-----EEECTTCEEE
T ss_pred EEEECCCCcCCCCccCCCCcEEEEEEECEEEEEEC-CEE-----EEeCCCCEEE
Confidence 4566777644 22223336899999999999874 321 4678999864
No 109
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=66.42 E-value=17 Score=29.77 Aligned_cols=53 Identities=8% Similarity=0.217 Sum_probs=34.9
Q ss_pred ceeeeecCCCEEEec-CCccCeEEEEEeeEEEEeeecCC-ceeeeeeeeCCCCeee
Q 038042 47 LKLVPYTERSILVHE-GSGVEKMFFIVRGKIWSEPTTIR-TTTFSFNASNDGHFCG 100 (162)
Q Consensus 47 ~~~~~~~~ge~I~~~-G~~~~~ly~I~~G~v~v~~~~~~-~~~~~~~~~~~G~~~G 100 (162)
+....+++|.++-.= ...+..+++|++|.+++...+.. ...+. ..+++||++=
T Consensus 340 ~~~v~l~pGa~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~G~~~~~-~~l~~GDv~v 394 (476)
T 1fxz_A 340 AEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFD-GELQEGRVLI 394 (476)
T ss_dssp EEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSCEEEE-EEEETTCEEE
T ss_pred EEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEecCCCEEee-eEEcCCCEEE
Confidence 345778888865322 23368999999999999875431 12222 4688999874
No 110
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=66.27 E-value=11 Score=28.40 Aligned_cols=48 Identities=15% Similarity=0.234 Sum_probs=36.3
Q ss_pred ceeeeecCCCEEEe-cCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 47 LKLVPYTERSILVH-EGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 47 ~~~~~~~~ge~I~~-~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
+....+++|..+-. +-...++.++|++|...+.. +|+. ..+++||++-
T Consensus 193 ~~~~~l~pG~~i~~~~~h~~e~~~~il~G~~~~~~-~~~~-----~~v~~GD~~~ 241 (278)
T 1sq4_A 193 VNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRL-NQDW-----VEVEAGDFMW 241 (278)
T ss_dssp EEEEEECSSSEESCCCCCSEEEEEEEEECEEEEEE-TTEE-----EEEETTCEEE
T ss_pred EEEEEECCCCCcCCCCCCCccEEEEEEeCEEEEEE-CCEE-----EEeCCCCEEE
Confidence 44588999999964 55667789999999988776 4422 4678999874
No 111
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=66.12 E-value=7.8 Score=24.73 Aligned_cols=34 Identities=15% Similarity=0.124 Sum_probs=24.3
Q ss_pred CccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 63 SGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 63 ~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
.....+++|++|.+++...+.. .. ..+++||.+-
T Consensus 51 ~~~~E~~~Vl~G~~~l~~~~~~-~~---~~l~~Gd~i~ 84 (112)
T 2opk_A 51 SPQDEWVMVVSGSAGIECEGDT-AP---RVMRPGDWLH 84 (112)
T ss_dssp CSSEEEEEEEESCEEEEETTCS-SC---EEECTTEEEE
T ss_pred CCccEEEEEEeCeEEEEECCEE-EE---EEECCCCEEE
Confidence 4567899999999999884431 00 2578999874
No 112
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=65.99 E-value=16 Score=25.32 Aligned_cols=45 Identities=9% Similarity=0.073 Sum_probs=30.3
Q ss_pred eeecCCCEEEecC--CccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 50 VPYTERSILVHEG--SGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 50 ~~~~~ge~I~~~G--~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
..+++|...-..- .....+++|++|.+.+.. ++.. ..+.+||.+=
T Consensus 109 ~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~-~~~~-----~~l~~GD~i~ 155 (192)
T 1y9q_A 109 ITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFF-DEQW-----HELQQGEHIR 155 (192)
T ss_dssp EEECTTCEEEECCCSTTCEEEEEEEESCEEEEE-TTEE-----EEECTTCEEE
T ss_pred EEECCCCCccCCCCCCCCEEEEEEEEeEEEEEE-CCEE-----EEeCCCCEEE
Confidence 4566776654211 234689999999999877 4421 3688999874
No 113
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=64.56 E-value=20 Score=29.68 Aligned_cols=57 Identities=9% Similarity=0.181 Sum_probs=37.2
Q ss_pred HHhhceeeeecCCCEEEe-cCCccCeEEEEEeeEEEEeeecCC-ceeeeeeeeCCCCeee
Q 038042 43 MLDLLKLVPYTERSILVH-EGSGVEKMFFIVRGKIWSEPTTIR-TTTFSFNASNDGHFCG 100 (162)
Q Consensus 43 l~~~~~~~~~~~ge~I~~-~G~~~~~ly~I~~G~v~v~~~~~~-~~~~~~~~~~~G~~~G 100 (162)
+--.+....+++|.++-. -...+..+++|++|.+++...+.. ...+. ..+++||++=
T Consensus 370 l~is~a~v~L~PG~~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~G~~~~~-~~l~~GDv~v 428 (510)
T 3c3v_A 370 LGLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNRVYD-EELQEGHVLV 428 (510)
T ss_dssp HTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEE-EEEETTCEEE
T ss_pred ceEEEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEeCCCCEEEe-EEEcCCcEEE
Confidence 333445678888886532 223368999999999999875431 12222 4688999874
No 114
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A
Probab=64.56 E-value=28 Score=28.35 Aligned_cols=55 Identities=7% Similarity=0.058 Sum_probs=37.2
Q ss_pred hhceeeeecCCCEEEe-cCCccCeEEEEEeeEEEEeeecCC-ceeeeeeeeCCCCeee
Q 038042 45 DLLKLVPYTERSILVH-EGSGVEKMFFIVRGKIWSEPTTIR-TTTFSFNASNDGHFCG 100 (162)
Q Consensus 45 ~~~~~~~~~~ge~I~~-~G~~~~~ly~I~~G~v~v~~~~~~-~~~~~~~~~~~G~~~G 100 (162)
-.+....+.+|.+... =.-.+..+++|++|.+++...+.. ...+. ..+.+||+|=
T Consensus 322 iS~a~v~l~pG~~~~pH~Hp~A~Ei~yV~~G~~~v~vv~~~g~~~~~-~~l~~GDv~v 378 (459)
T 2e9q_A 322 LSAERGVLYSNAMVAPHYTVNSHSVMYATRGNARVQVVDNFGQSVFD-GEVREGQVLM 378 (459)
T ss_dssp CEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEE-EEEETTCEEE
T ss_pred cceEEEEeeCCcCccceECCCCCEEEEEEeeEEEEEEEeCCCCEEEe-eEEeCCcEEE
Confidence 3445677888877632 233468999999999999876431 22332 4689999984
No 115
>3or8_A Transcription elongation factor SPT6; SH2, CTD binding; HET: MES; 1.60A {Candida glabrata} PDB: 3pjp_A* 3psj_A* 3psk_A 2l3t_A 3gxw_A 3gxx_A
Probab=64.54 E-value=13 Score=26.77 Aligned_cols=39 Identities=8% Similarity=0.128 Sum_probs=31.8
Q ss_pred hhCccccccCHHHHHHHHhhceeeeecCCCEEEecCCcc-CeEEE
Q 038042 27 VLHQVFDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGV-EKMFF 70 (162)
Q Consensus 27 ~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~-~~ly~ 70 (162)
-..|.|.+++-.+.++.+... +.||+|+++...+ +++.+
T Consensus 6 I~HP~F~n~~~~qAe~~L~~~-----~~Ge~iIRPSSkg~dhLtv 45 (197)
T 3or8_A 6 INHPYYFPFNGKQAEDYLRSK-----ERGDFVIRQSSRGDDHLAI 45 (197)
T ss_dssp CCCTTEECCCHHHHHHHHTTS-----CTTCEEEEECSSCTTEEEE
T ss_pred cCCCCcCCCCHHHHHHHHhcC-----CCCCEEEeeCCCCCCcEEE
Confidence 457999999999999988763 7899999999974 55543
No 116
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=64.32 E-value=2.3 Score=26.79 Aligned_cols=49 Identities=10% Similarity=-0.003 Sum_probs=31.4
Q ss_pred eeeeecCCCEEEecCCcc-CeEEEEEeeEEEEeeecCCceeeeeeeeCCCCee
Q 038042 48 KLVPYTERSILVHEGSGV-EKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFC 99 (162)
Q Consensus 48 ~~~~~~~ge~I~~~G~~~-~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~ 99 (162)
....++||+-+-..-... ...|+|++|.+.+...|+.... ..+.+|+.+
T Consensus 20 ~r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v~~~d~~~~~---~~l~~G~~~ 69 (98)
T 3lag_A 20 TEWRLPPGSATGHHTHGMDYVVVPMADGEMTIVAPDGTRSL---AQLKTGRSY 69 (98)
T ss_dssp EEEEECTTEECCSEECCSCEEEEESSCBC-CEECTTSCEEC---CCBCTTCCE
T ss_pred EEEEECCCCccCcEECCCcEEEEEEeccEEEEEeCCCceEE---EEecCCcEE
Confidence 346788888774444444 4678888999998876653222 356788765
No 117
>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134}
Probab=64.26 E-value=19 Score=24.83 Aligned_cols=67 Identities=12% Similarity=0.079 Sum_probs=43.5
Q ss_pred hceeeeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeeecccccCccccccCCCCcceeEEEec
Q 038042 46 LLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCGEELLPRASVLQLGGLPISTRTVIAH 125 (162)
Q Consensus 46 ~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~Ge~~l~~~~~~~~~~~~~~~~tv~a~ 125 (162)
.....++++|..+-.-........+|++|..+... ++ ..+.+|+++=+.. -...+..+.
T Consensus 43 ~v~lvr~~pG~~~p~H~H~g~ee~~VL~G~~~~~e-~~-------~~~~~Gd~~~~P~-------------g~~H~~~~~ 101 (159)
T 3ebr_A 43 TITLLKAPAGMEMPRHHHTGTVIVYTVQGSWRYKE-HD-------WVAHAGSVVYETA-------------STRHTPQSA 101 (159)
T ss_dssp EEEEEEECSSCBCCCEEESSCEEEEEEESCEEETT-SS-------CCBCTTCEEEECS-------------SEEECEEES
T ss_pred EEEEEEECCCCCcccccCCCCEEEEEEEeEEEEeC-CC-------eEECCCeEEEECC-------------CCcceeEeC
Confidence 34557889998887666666788899999977431 12 2467898875311 223455555
Q ss_pred ----ceeEEEEE
Q 038042 126 ----TPVEAFVI 133 (162)
Q Consensus 126 ----~~~~l~~i 133 (162)
++|.++.+
T Consensus 102 ~~~~e~~~~~~~ 113 (159)
T 3ebr_A 102 YAEGPDIITFNI 113 (159)
T ss_dssp SSSSSCEEEEEE
T ss_pred CCCCCCEEEEEE
Confidence 67877764
No 118
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=64.17 E-value=39 Score=24.64 Aligned_cols=44 Identities=7% Similarity=0.050 Sum_probs=31.5
Q ss_pred eeeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 49 LVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 49 ~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
...+++|...-..- .+.+.+|++|++++.. +++. ..+++||.+-
T Consensus 54 ~~~l~Pg~~~~~~~--~ee~~~Vl~G~~~~~~-~~~~-----~~l~~Gd~~~ 97 (246)
T 1sfn_A 54 TAEMPAGAQATESV--YQRFAFVLSGEVDVAV-GGET-----RTLREYDYVY 97 (246)
T ss_dssp EEEECTTCEEECCS--SEEEEEEEEEEEEEEC-SSCE-----EEECTTEEEE
T ss_pred EEEECCCCcCCCCc--eeEEEEEEECEEEEEE-CCEE-----EEECCCCEEE
Confidence 35677777654432 6788999999999987 3432 4688999774
No 119
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=64.13 E-value=9.1 Score=27.13 Aligned_cols=88 Identities=17% Similarity=0.203 Sum_probs=49.6
Q ss_pred HHHHHHHHhhcee----eeecCCCEEE-ecCC----------ccCeEEEEEeeEEEEeeec-CC-ceeeeeeeeCCCCee
Q 038042 37 EHFLNAMLDLLKL----VPYTERSILV-HEGS----------GVEKMFFIVRGKIWSEPTT-IR-TTTFSFNASNDGHFC 99 (162)
Q Consensus 37 ~~~l~~l~~~~~~----~~~~~ge~I~-~~G~----------~~~~ly~I~~G~v~v~~~~-~~-~~~~~~~~~~~G~~~ 99 (162)
++.++...+..++ +....+++++ .-|. ..+.++++++|.+.+-..| |. ...+..-.+++||+|
T Consensus 11 ~~wl~e~~~~~~PPV~Nk~v~~~~~~V~~vgGPn~r~D~H~~~~eE~Fy~lkG~m~l~v~d~g~~~~~~~dv~i~eGdmf 90 (176)
T 1zvf_A 11 DKWLKENEGLLKPPVNNYCLHKGGFTVMIVGGPNERTDYHINPTPEWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSY 90 (176)
T ss_dssp HHHHHHHGGGGSSSSCEEEEECSSEEEEEECSSBCCSCEEECSSCEEEEEEESCEEEEEEECSSSSCEEEEEEECTTEEE
T ss_pred HHHHHHhHhhcCCCcCCEEEecCCEEEEEEcCCCcCCcCcCCCCceEEEEEeCEEEEEEEcCCCcccceeeEEECCCCEE
Confidence 4556666666665 3333356553 2222 3468999999999998776 41 001111368999998
Q ss_pred ecccccCccccccCCCCcceeEEEecceeEEEEEeHHH
Q 038042 100 GEELLPRASVLQLGGLPISTRTVIAHTPVEAFVIEADD 137 (162)
Q Consensus 100 Ge~~l~~~~~~~~~~~~~~~~tv~a~~~~~l~~i~~~~ 137 (162)
=. .. +. + .+-.+-+++..+.+.+..
T Consensus 91 ll---P~-------gv-p--HsP~r~~e~v~lviErkR 115 (176)
T 1zvf_A 91 LL---PG-------NV-P--HSPVRFADTVGIVVEQDR 115 (176)
T ss_dssp EE---CT-------TC-C--EEEEECTTCEEEEEEECC
T ss_pred Ec---CC-------CC-C--cCCcccCCcEEEEEEecC
Confidence 53 21 12 1 233334677777776543
No 120
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=61.80 E-value=13 Score=27.65 Aligned_cols=47 Identities=9% Similarity=0.070 Sum_probs=33.0
Q ss_pred eeeeecCCCEEEe-cCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 48 KLVPYTERSILVH-EGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 48 ~~~~~~~ge~I~~-~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
....+++|..+-. .-....++++|++|.+.+.. +++. ..+++||++=
T Consensus 185 ~~~~l~pg~~~~~~H~H~~~E~~yVl~G~~~~~i-~~~~-----~~l~~GD~i~ 232 (274)
T 1sef_A 185 HILSFEPGASHAYIETHVQEHGAYLISGQGMYNL-DNEW-----YPVEKGDYIF 232 (274)
T ss_dssp EEEEECTTCBCSSCBCCSCCEEEEEEECEEEEEE-TTEE-----EEEETTCEEE
T ss_pred EEEEECCCCccCcceeccCeEEEEEEeCEEEEEE-CCEE-----EEECCCCEEE
Confidence 3457788876633 33456789999999999887 3421 4678999874
No 121
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=61.60 E-value=25 Score=27.03 Aligned_cols=50 Identities=8% Similarity=0.082 Sum_probs=33.9
Q ss_pred eeeecCCCEEEecCCc-cCeEEEEEeeEEEEeeecC-CceeeeeeeeCCCCeee
Q 038042 49 LVPYTERSILVHEGSG-VEKMFFIVRGKIWSEPTTI-RTTTFSFNASNDGHFCG 100 (162)
Q Consensus 49 ~~~~~~ge~I~~~G~~-~~~ly~I~~G~v~v~~~~~-~~~~~~~~~~~~G~~~G 100 (162)
...+.+|...-.--.. ...+++|++|++++...++ ..... ..+++||++-
T Consensus 56 ~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~~~~--~~l~~GD~~~ 107 (361)
T 2vqa_A 56 YMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKVEI--ADVDKGGLWY 107 (361)
T ss_dssp EEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSCEEE--EEEETTEEEE
T ss_pred EEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCcEEE--EEEcCCCEEE
Confidence 4667788865332234 7899999999999987642 11111 4688999874
No 122
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=61.39 E-value=14 Score=25.04 Aligned_cols=52 Identities=10% Similarity=-0.088 Sum_probs=31.7
Q ss_pred eeeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCc---eeeeeeeeCCCCeee
Q 038042 49 LVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRT---TTFSFNASNDGHFCG 100 (162)
Q Consensus 49 ~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~---~~~~~~~~~~G~~~G 100 (162)
...+++|..+-.--.....+++|++|.+.+...++.. .......+.+||++=
T Consensus 45 ~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~~~~~~~~~~~~l~~Gd~i~ 99 (163)
T 1lr5_A 45 LQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFS 99 (163)
T ss_dssp EEEECTTCBCCEEEESSCEEEEEEECCEEEEECCSSSSSCCSCEEEEECTTEEEE
T ss_pred EEEECCCCcCCCeECCCCeEEEEEeCEEEEEECCccccccCccEEEEeCCCCEEE
Confidence 4567777755222223567999999999998755210 000114688999874
No 123
>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}
Probab=61.15 E-value=11 Score=27.98 Aligned_cols=31 Identities=10% Similarity=0.164 Sum_probs=24.2
Q ss_pred cCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 65 VEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 65 ~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
.+.+..|++|++.+...+|.. ..+++||.+-
T Consensus 186 ~~E~~~ILeG~v~lt~~~G~~-----~~~~aGD~~~ 216 (238)
T 3myx_A 186 IHELMNLIEGRVVLSLENGSS-----LTVNTGDTVF 216 (238)
T ss_dssp SCEEEEEEECCEEEEETTSCE-----EEECTTCEEE
T ss_pred CCEEEEEEEeEEEEEeCCCCE-----EEECCCCEEE
Confidence 467889999999999866632 3688999885
No 124
>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A
Probab=60.67 E-value=15 Score=29.65 Aligned_cols=50 Identities=8% Similarity=0.144 Sum_probs=36.9
Q ss_pred eeeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 49 LVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 49 ~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
...+.+|..+..---.++.+++|++|.+.+-..+..... ...+++||++-
T Consensus 48 ~~~l~p~gl~~Phh~~A~ei~yV~~G~g~~g~V~~~~~~--~~~l~~GDv~~ 97 (418)
T 3s7i_A 48 QIEAKPNTLVLPKHADADNILVIQQGQATVTVANGNNRK--SFNLDEGHALR 97 (418)
T ss_dssp EEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSCEE--EEEEETTEEEE
T ss_pred EEEecCCceeeeeeCCCCeEEEEEEeeEEEEEEecCCEE--EEEecCCCEEE
Confidence 456778888877766788999999999988765432222 25789999984
No 125
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=60.33 E-value=28 Score=23.07 Aligned_cols=51 Identities=6% Similarity=-0.082 Sum_probs=30.2
Q ss_pred eeecCCCEEEec-CCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 50 VPYTERSILVHE-GSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 50 ~~~~~ge~I~~~-G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
..+++|..+-.- -...+.+++|++|.+.+...+..........+.+||++=
T Consensus 48 ~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~~~~~~~~~~l~~Gd~i~ 99 (148)
T 2oa2_A 48 MSIQVGEDIGLEIHPHLDQFLRVEEGRGLVQMGHRQDNLHFQEEVFDDYAIL 99 (148)
T ss_dssp EEECTTCBCCCBCCTTCEEEEEEEESEEEEEEESBTTBCCEEEEEETTCEEE
T ss_pred EEECCCCccCceECCCCcEEEEEEeCEEEEEECCccccceeeEEECCCCEEE
Confidence 456676654222 223458999999999998754321000013578999763
No 126
>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}
Probab=59.90 E-value=29 Score=28.37 Aligned_cols=55 Identities=5% Similarity=0.146 Sum_probs=37.4
Q ss_pred hhceeeeecCCCEEE-ecCCccCeEEEEEeeEEEEeeecCC-ceeeeeeeeCCCCeee
Q 038042 45 DLLKLVPYTERSILV-HEGSGVEKMFFIVRGKIWSEPTTIR-TTTFSFNASNDGHFCG 100 (162)
Q Consensus 45 ~~~~~~~~~~ge~I~-~~G~~~~~ly~I~~G~v~v~~~~~~-~~~~~~~~~~~G~~~G 100 (162)
-.+....+.+|.+.- +=.-.+..+.+|++|.+++...+.. ...+. ..+++||+|=
T Consensus 323 iS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~g~~~f~-~~l~~GDV~v 379 (466)
T 3kgl_A 323 LSALRGSIRQNAMVLPQWNANANAVLYVTDGEAHVQVVNDNGDRVFD-GQVSQGQLLS 379 (466)
T ss_dssp CEEEEEEEETTEEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEE-EEEETTCEEE
T ss_pred eeeEEEEeecCcEeeeeECCCCCEEEEEEeceEEEEEEeCCCcEEEE-eEecCCcEEE
Confidence 334567788887662 2223578999999999999876532 22332 5799999984
No 127
>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}
Probab=59.86 E-value=33 Score=28.28 Aligned_cols=54 Identities=11% Similarity=0.217 Sum_probs=37.3
Q ss_pred hceeeeecCCCEEE-ecCCccCeEEEEEeeEEEEeeecCC-ceeeeeeeeCCCCeee
Q 038042 46 LLKLVPYTERSILV-HEGSGVEKMFFIVRGKIWSEPTTIR-TTTFSFNASNDGHFCG 100 (162)
Q Consensus 46 ~~~~~~~~~ge~I~-~~G~~~~~ly~I~~G~v~v~~~~~~-~~~~~~~~~~~G~~~G 100 (162)
.+....+.+|.+.- +=.-.+..+.+|++|.+++...+.. ...++ ..+.+||+|=
T Consensus 359 S~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~g~~~f~-~~l~~GDV~v 414 (496)
T 3ksc_A 359 SAEHGSLHKNAMFVPHYNLNANSIIYALKGRARLQVVNCNGNTVFD-GELEAGRALT 414 (496)
T ss_dssp EEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEE-EEEETTCEEE
T ss_pred eEEEEEeeCCeEECCeeCCCCCEEEEEEeceEEEEEEeCCCcEEEE-EEecCCeEEE
Confidence 34567888887763 3334578999999999999876532 22332 5789999984
No 128
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=59.52 E-value=25 Score=27.36 Aligned_cols=52 Identities=8% Similarity=0.052 Sum_probs=34.4
Q ss_pred eeeeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 48 KLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 48 ~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
....+.+|...-.--.....+++|++|.+++...+.....+. ..+++||++=
T Consensus 82 ~~~~l~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~g~~~~-~~l~~GD~~~ 133 (385)
T 1j58_A 82 VNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSFI-DDVGEGDLWY 133 (385)
T ss_dssp EEEEECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCEEE-EEEETTEEEE
T ss_pred EEEEECCCCCCCCccCChheEEEEEeeeEEEEEEeCCCcEEE-EEeCCCCEEE
Confidence 446778888664333347899999999999987642111111 3688999874
No 129
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=59.27 E-value=18 Score=26.66 Aligned_cols=46 Identities=20% Similarity=0.297 Sum_probs=30.5
Q ss_pred eeeecCCCEEEecC--CccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 49 LVPYTERSILVHEG--SGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 49 ~~~~~~ge~I~~~G--~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
...+++|...-..- ...+.+.+|++|++++.. +++. ..+++||.+-
T Consensus 63 ~~~l~pg~~~~~~~~~~~~ee~~~Vl~G~l~~~~-~~~~-----~~L~~Gd~~~ 110 (261)
T 1rc6_A 63 LVTLHQNGGNQQGFGGEGIETFLYVISGNITAKA-EGKT-----FALSEGGYLY 110 (261)
T ss_dssp EEEEEEEEEESSCSCCTTEEEEEEEEESEEEEEE-TTEE-----EEEETTEEEE
T ss_pred EEEEcCCCccCCCCCCCCceEEEEEEEeEEEEEE-CCEE-----EEECCCCEEE
Confidence 35666766543221 235678999999999987 4422 4688999774
No 130
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=59.09 E-value=43 Score=25.52 Aligned_cols=69 Identities=9% Similarity=-0.062 Sum_probs=50.9
Q ss_pred eeeeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeeecccccCccccccCCCCcceeEEEecce
Q 038042 48 KLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCGEELLPRASVLQLGGLPISTRTVIAHTP 127 (162)
Q Consensus 48 ~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~Ge~~l~~~~~~~~~~~~~~~~tv~a~~~ 127 (162)
+...|.+|+.+..+.+. +.++-+++|...+.. ++.+ ..+++||..-- .. -...+..+.++
T Consensus 210 eV~l~G~Ges~~~~~~~-d~wiWqLEGss~Vt~-~~q~-----~~L~~~DsLLI---pa----------~~~y~~~r~~g 269 (286)
T 2qnk_A 210 QVIAYGQGSSEGLRQNV-DVWLWQLEGSSVVTM-GGRR-----LSLAPDDSLLV---LA----------GTSYAWERTQG 269 (286)
T ss_dssp EEEEECSEEEEECCCSS-CEEEEEEESCEEEEE-TTEE-----EEECTTEEEEE---CT----------TCCEEEEECTT
T ss_pred EEEEEcCCccccccCcC-cEEEEEEcCceEEEE-CCeE-----EeccCCCEEEe---cC----------CCeEEEEecCC
Confidence 34669999999999887 999999999987655 4422 35778886532 11 23467899999
Q ss_pred eEEEEEeHH
Q 038042 128 VEAFVIEAD 136 (162)
Q Consensus 128 ~~l~~i~~~ 136 (162)
|.++++.-+
T Consensus 270 sv~L~I~~~ 278 (286)
T 2qnk_A 270 SVALSVTQD 278 (286)
T ss_dssp CEEEEEEEC
T ss_pred eEEEEEEEC
Confidence 999998654
No 131
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21
Probab=58.97 E-value=19 Score=24.19 Aligned_cols=51 Identities=10% Similarity=0.029 Sum_probs=34.2
Q ss_pred ceeeeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeeec
Q 038042 47 LKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCGE 101 (162)
Q Consensus 47 ~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~Ge 101 (162)
....++++|..+-.-.......++|++|..+.. ++.... -..+++|+++=.
T Consensus 46 ~~~~~~~pG~~~p~H~H~~~ee~~VL~G~~~~~--~g~~~~--~~~~~~Gd~~~~ 96 (145)
T 2o1q_A 46 TAIFDCPAGSSFAAHVHVGPGEYFLTKGKMDVR--GGKAAG--GDTAIAPGYGYE 96 (145)
T ss_dssp EEEEEECTTEEECCEEESSCEEEEEEEEEEEET--TCGGGT--SEEEESSEEEEE
T ss_pred EEEEEECCCCCCCccCCCCCEEEEEEEeEEEEc--CCCEec--ceEeCCCEEEEE
Confidence 456789999888666666777899999998843 231110 024678988753
No 132
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=58.88 E-value=29 Score=26.64 Aligned_cols=50 Identities=6% Similarity=0.019 Sum_probs=34.2
Q ss_pred eeeeecCCCEEEecCCc-cCeEEEEEeeEEEEeee--cCCceeeeeeeeCCCCeee
Q 038042 48 KLVPYTERSILVHEGSG-VEKMFFIVRGKIWSEPT--TIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 48 ~~~~~~~ge~I~~~G~~-~~~ly~I~~G~v~v~~~--~~~~~~~~~~~~~~G~~~G 100 (162)
....+++|..+-.--.. ...+++|++|.+++... +|+. . ...+++||++-
T Consensus 237 ~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~~--~-~~~l~~GD~~~ 289 (361)
T 2vqa_A 237 ALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASEGKA--S-VSRLQQGDVGY 289 (361)
T ss_dssp EEEEECTTCEEEEEECSSCCEEEEEEESCEEEEEECSTTCE--E-EEEECTTCEEE
T ss_pred EEEEECCCcccccccCCCCCEEEEEEeCEEEEEEEcCCCcE--E-EEEECCCCEEE
Confidence 45678888876433333 48999999999998864 3331 1 14689999884
No 133
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=57.84 E-value=32 Score=26.23 Aligned_cols=58 Identities=14% Similarity=0.172 Sum_probs=38.1
Q ss_pred ccCeEEEEEeeEEEEeeec-CCceeeeeeeeCCCCeeecccccCccccccCCCCcceeEEEecceeEEEEEeHHH
Q 038042 64 GVEKMFFIVRGKIWSEPTT-IRTTTFSFNASNDGHFCGEELLPRASVLQLGGLPISTRTVIAHTPVEAFVIEADD 137 (162)
Q Consensus 64 ~~~~ly~I~~G~v~v~~~~-~~~~~~~~~~~~~G~~~Ge~~l~~~~~~~~~~~~~~~~tv~a~~~~~l~~i~~~~ 137 (162)
..+.++++++|...+-..| |+... -.+++|++|=. + . +. +.+=.+-++|..+.|.+..
T Consensus 50 ~~dE~FyqlkG~m~l~~~d~g~~~~---V~i~eGemfll---P-~------gv---~HsP~r~~et~gLviE~~R 108 (286)
T 2qnk_A 50 EGEEVFYQLEGDMVLRVLEQGKHRD---VVIRQGEIFLL---P-A------RV---PHSPQRFANTVGLVVERRR 108 (286)
T ss_dssp SSCEEEEEEESCEEEEEEETTEEEE---EEECTTEEEEE---C-T------TC---CEEEEECTTCEEEEEEECC
T ss_pred CCCeEEEEEeCeEEEEEEeCCceee---EEECCCeEEEe---C-C------CC---CcCCcccCCeEEEEEeecC
Confidence 4679999999999998776 42222 36899998853 1 1 11 2334456778888777543
No 134
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Probab=57.09 E-value=24 Score=26.70 Aligned_cols=46 Identities=9% Similarity=0.048 Sum_probs=32.8
Q ss_pred eeeecCCCEEEecCCc-cCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 49 LVPYTERSILVHEGSG-VEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 49 ~~~~~~ge~I~~~G~~-~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
.....+|...-.--.. ...+++|++|.+++.. +++. ..+++||++=
T Consensus 50 ~~~~~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~-~~~~-----~~l~~Gd~~~ 96 (337)
T 1y3t_A 50 LLSGGKGDAFPLHVHKDTHEGILVLDGKLELTL-DGER-----YLLISGDYAN 96 (337)
T ss_dssp EEEECTTCEEEEEECTTCCEEEEEEESCEEEEE-TTEE-----EEECTTCEEE
T ss_pred EEEeCCCCCCCceeCCCceEEEEEEECEEEEEE-CCEE-----EEECCCCEEE
Confidence 4577888766333333 7899999999999886 4421 4688999874
No 135
>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}
Probab=56.13 E-value=49 Score=27.02 Aligned_cols=54 Identities=11% Similarity=0.172 Sum_probs=36.8
Q ss_pred hceeeeecCCCEEE-ecCCccCeEEEEEeeEEEEeeecCC-ceeeeeeeeCCCCeee
Q 038042 46 LLKLVPYTERSILV-HEGSGVEKMFFIVRGKIWSEPTTIR-TTTFSFNASNDGHFCG 100 (162)
Q Consensus 46 ~~~~~~~~~ge~I~-~~G~~~~~ly~I~~G~v~v~~~~~~-~~~~~~~~~~~G~~~G 100 (162)
.+....+.+|.+.- +=.-.+..+.+|++|.+++...+.. ...++ ..+.+||+|=
T Consensus 324 S~a~v~l~pGgm~~PHwHp~A~Ei~yV~~G~~~v~vV~~~g~~~f~-~~l~~GDVfv 379 (465)
T 3qac_A 324 SAAKGVLYRNAMMAPHYNLNAHNIMYCVRGRGRIQIVNDQGQSVFD-EELSRGQLVV 379 (465)
T ss_dssp EEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEE-EEEETTCEEE
T ss_pred eEEEEEecCCcEeeeEECCCCCEEEEEEeCCEEEEEEeCCCcEEEE-EEecCCeEEE
Confidence 34557788887762 2233478999999999998766432 22333 5789999984
No 136
>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}
Probab=54.13 E-value=16 Score=23.65 Aligned_cols=31 Identities=19% Similarity=0.166 Sum_probs=23.4
Q ss_pred cCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 65 VEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 65 ~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
...+++|++|.+++...+++. ..+.+||++=
T Consensus 64 ~~E~~~vl~G~~~~~~~~~~~-----~~l~~Gd~~~ 94 (134)
T 2o8q_A 64 GFQLFYVLRGWVEFEYEDIGA-----VMLEAGGSAF 94 (134)
T ss_dssp SCEEEEEEESEEEEEETTTEE-----EEEETTCEEE
T ss_pred CcEEEEEEeCEEEEEECCcEE-----EEecCCCEEE
Confidence 378999999999998854221 4678999874
No 137
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=53.95 E-value=20 Score=26.46 Aligned_cols=47 Identities=11% Similarity=0.028 Sum_probs=31.8
Q ss_pred eeeeecCCCEEEe-cCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 48 KLVPYTERSILVH-EGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 48 ~~~~~~~ge~I~~-~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
....+++|..+-. .-....++++|++|.+++.. +++. ..+++||++=
T Consensus 182 ~~~~~~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i-~~~~-----~~l~~GD~i~ 229 (261)
T 1rc6_A 182 HILSFAPGASHGYIETHVQEHGAYILSGQGVYNL-DNNW-----IPVKKGDYIF 229 (261)
T ss_dssp EEEEECTTCCBEEEEEESSCEEEEEEESEEEEES-SSCE-----EEEETTCEEE
T ss_pred EEEEECCCCccCcccCCCceEEEEEEEeEEEEEE-CCEE-----EEeCCCCEEE
Confidence 3467778775532 22235789999999999876 3432 3578999874
No 138
>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*
Probab=53.68 E-value=17 Score=29.05 Aligned_cols=50 Identities=8% Similarity=-0.037 Sum_probs=36.8
Q ss_pred ceeeeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCe
Q 038042 47 LKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHF 98 (162)
Q Consensus 47 ~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~ 98 (162)
+....+.+|..+..--..++.+++|++|+..+...+..... ...+++||+
T Consensus 54 ~~~~~l~pgg~~~ph~~~a~ei~yVl~G~~~v~~v~~~~~~--~~~l~~GDv 103 (397)
T 2phl_A 54 LVEFRSKPETLLLPQQADAELLLVVRSGSAILVLVKPDDRR--EYFFLTSDN 103 (397)
T ss_dssp EEEEEECSSEEEEEEEESEEEEEEEEESEEEEEEEETTTEE--EEEEEESSC
T ss_pred EEEEEECCCcCccCEecCCCeEEEEEeeeEEEEEEeCCCcE--EEEECCCCc
Confidence 44678889988766666788999999999998765321112 257889998
No 139
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=52.31 E-value=79 Score=24.43 Aligned_cols=49 Identities=12% Similarity=-0.016 Sum_probs=32.5
Q ss_pred eeeecCCCEEEecCCcc-CeEEEEEeeEEEEeee--cCCceeeeeeeeCCCCeee
Q 038042 49 LVPYTERSILVHEGSGV-EKMFFIVRGKIWSEPT--TIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 49 ~~~~~~ge~I~~~G~~~-~~ly~I~~G~v~v~~~--~~~~~~~~~~~~~~G~~~G 100 (162)
...+++|...-..-... ..+++|++|.+++... +|+... ..+++||++-
T Consensus 261 ~~~l~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~~~g~~~~---~~l~~GD~~~ 312 (385)
T 1j58_A 261 LVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHART---FNYQAGDVGY 312 (385)
T ss_dssp EEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEEETTEEEE---EEEESSCEEE
T ss_pred EEEECCCcccCceeCCCCCEEEEEEeCeEEEEEEcCCCcEEE---EEEcCCCEEE
Confidence 35677777664333334 7899999999998764 332112 4688999874
No 140
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=51.76 E-value=26 Score=26.41 Aligned_cols=48 Identities=8% Similarity=0.017 Sum_probs=36.2
Q ss_pred ceeeeecCCCEEE-ecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 47 LKLVPYTERSILV-HEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 47 ~~~~~~~~ge~I~-~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
+...++.+|..+- .+-...++.++|++|.....- +++. ..+++||++=
T Consensus 188 ~~~~t~~PG~~~p~~e~H~~eh~~~vL~G~g~y~l-~~~~-----~~V~~GD~i~ 236 (266)
T 4e2q_A 188 IHTMDFQPGEFLNVKEVHYNQHGLLLLEGQGIYRL-GDNW-----YPVQAGDVIW 236 (266)
T ss_dssp EEEEEECTTCBCSSCCCCSCCEEEEEEECEEEEEE-TTEE-----EEEETTCEEE
T ss_pred EEEEEECCCcCcCCceEcccceEEEEEeceEEEEE-CCEE-----EEecCCCEEE
Confidence 3457799999994 577788899999999977665 4422 3567999874
No 141
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=51.31 E-value=15 Score=27.61 Aligned_cols=46 Identities=15% Similarity=0.197 Sum_probs=30.9
Q ss_pred eeeecCCCEEE-e-cCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 49 LVPYTERSILV-H-EGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 49 ~~~~~~ge~I~-~-~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
...+++|...- . -....+.+++|++|++++... ++. ..+++||.+-
T Consensus 72 ~~~l~PG~~~~~~~h~H~~eE~~~Vl~G~l~v~v~-g~~-----~~L~~GD~i~ 119 (278)
T 1sq4_A 72 IVELAPNGGSDKPEQDPNAEAVLFVVEGELSLTLQ-GQV-----HAMQPGGYAF 119 (278)
T ss_dssp EEEEEEEEEESSCCCCTTEEEEEEEEESCEEEEES-SCE-----EEECTTEEEE
T ss_pred EEEECCCCccCCCCcCCCceEEEEEEeCEEEEEEC-CEE-----EEECCCCEEE
Confidence 35666776551 1 123467899999999999874 432 4688999864
No 142
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A
Probab=50.90 E-value=12 Score=24.35 Aligned_cols=31 Identities=16% Similarity=0.116 Sum_probs=21.2
Q ss_pred cCeEEEEEeeEEEEee-ecCCceeeeeeeeCCCCeee
Q 038042 65 VEKMFFIVRGKIWSEP-TTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 65 ~~~ly~I~~G~v~v~~-~~~~~~~~~~~~~~~G~~~G 100 (162)
...+++|++|.+.+.. .+++. ..+.+||++-
T Consensus 59 ~~e~~~vl~G~~~~~~~~~~~~-----~~l~~Gd~~~ 90 (145)
T 3ht1_A 59 WEHEIYVLEGSMGLVLPDQGRT-----EEVGPGEAIF 90 (145)
T ss_dssp SCEEEEEEEECEEEEEGGGTEE-----EEECTTCEEE
T ss_pred CceEEEEEEeEEEEEEeECCEE-----EEECCCCEEE
Confidence 4455679999999882 24421 4688999764
No 143
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*
Probab=50.54 E-value=77 Score=24.46 Aligned_cols=70 Identities=9% Similarity=0.014 Sum_probs=46.0
Q ss_pred CCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeeecccccCccccccCCCCcceeEEEecce-eEEEEE
Q 038042 55 RSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCGEELLPRASVLQLGGLPISTRTVIAHTP-VEAFVI 133 (162)
Q Consensus 55 ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~Ge~~l~~~~~~~~~~~~~~~~tv~a~~~-~~l~~i 133 (162)
|+.+-.=....+.+++|++|.+++...+... ..+++||++=- .. -.+.++.+.++ ..++.+
T Consensus 262 g~~~~~h~~~~~~~~~vleG~~~i~i~g~~~-----~~l~~Gd~~~i---Pa----------g~~h~~~~~~~~~~~l~~ 323 (350)
T 1juh_A 262 TVTVPTWSFPGACAFQVQEGRVVVQIGDYAA-----TELGSGDVAFI---PG----------GVEFKYYSEAYFSKVLFV 323 (350)
T ss_dssp TSCCCCBCCSSCEEEEEEESCEEEEETTSCC-----EEECTTCEEEE---CT----------TCCEEEEESSSSEEEEEE
T ss_pred CCCCCcccCCCcEEEEEEeeEEEEEECCeEE-----EEeCCCCEEEE---CC----------CCCEEEEecCCeEEEEEE
Confidence 4444444467889999999999988843132 46889998742 21 12355666544 777777
Q ss_pred eH--HHHHHHH
Q 038042 134 EA--DDWKQLV 142 (162)
Q Consensus 134 ~~--~~~~~l~ 142 (162)
.. +.+...+
T Consensus 324 ~~g~~g~~~~~ 334 (350)
T 1juh_A 324 SSGSDGLDQNL 334 (350)
T ss_dssp EESSSSHHHHH
T ss_pred ecCccchhhee
Confidence 76 6777764
No 144
>3o14_A Anti-ecfsigma factor, CHRR; cupin, structural genomics, joint center for structura genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Marinobacter aquaeolei}
Probab=47.49 E-value=50 Score=23.99 Aligned_cols=64 Identities=13% Similarity=0.143 Sum_probs=42.3
Q ss_pred eeeeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeeecccccCccccccCCCCcceeEEEecce
Q 038042 48 KLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCGEELLPRASVLQLGGLPISTRTVIAHTP 127 (162)
Q Consensus 48 ~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~Ge~~l~~~~~~~~~~~~~~~~tv~a~~~ 127 (162)
....|++|..+-.-........+|++|... |+. ..+.+|+++=.. . -...+..|.++
T Consensus 46 ~lvr~~pG~~~p~H~H~g~Ee~~VL~G~f~----d~~------~~~~~Gd~~~~P---~----------g~~H~p~a~~g 102 (223)
T 3o14_A 46 SIVRYAPGSRFSAHTHDGGEEFIVLDGVFQ----DEH------GDYPAGTYVRNP---P----------TTSHVPGSAEG 102 (223)
T ss_dssp EEEEECTTEECCCEECTTCEEEEEEEEEEE----ETT------EEEETTEEEEEC---T----------TCEECCEESSC
T ss_pred EEEEECCCCCcccccCCCCEEEEEEEeEEE----ECC------eEECCCeEEEeC---C----------CCccccEeCCC
Confidence 457889998877666667888999999975 221 356788886421 0 12234455778
Q ss_pred eEEEEEe
Q 038042 128 VEAFVIE 134 (162)
Q Consensus 128 ~~l~~i~ 134 (162)
|.+|...
T Consensus 103 c~~~vk~ 109 (223)
T 3o14_A 103 CTIFVKL 109 (223)
T ss_dssp EEEEEEE
T ss_pred CEEEEEe
Confidence 8877654
No 145
>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*
Probab=47.26 E-value=45 Score=26.58 Aligned_cols=71 Identities=13% Similarity=0.002 Sum_probs=41.1
Q ss_pred eeecCCCEEEe-cCCccCeEEEEEeeEEEEeeecC------CceeeeeeeeCCCCeeecccccCccccccCCCCcceeEE
Q 038042 50 VPYTERSILVH-EGSGVEKMFFIVRGKIWSEPTTI------RTTTFSFNASNDGHFCGEELLPRASVLQLGGLPISTRTV 122 (162)
Q Consensus 50 ~~~~~ge~I~~-~G~~~~~ly~I~~G~v~v~~~~~------~~~~~~~~~~~~G~~~Ge~~l~~~~~~~~~~~~~~~~tv 122 (162)
..+.+|.+... =.-.+..+++|++|..++...+. .........+.+||+|=- +.. ....+
T Consensus 244 v~l~pG~~~~PH~h~~A~Ei~yVl~G~g~v~vv~~~~~~~~~g~~~~~~~l~~GDV~vv---P~G----------~~h~~ 310 (397)
T 2phl_A 244 IEMEEGALFVPHYYSKAIVILVVNEGEAHVELVGPKGNKETLEYESYRAELSKDDVFVI---PAA----------YPVAI 310 (397)
T ss_dssp EEECTTEEEEEEEESSCEEEEEEEESEEEEEEEEECC--CCSCEEEEEEEEETTCEEEE---CTT----------CCEEE
T ss_pred EEEcCCcEeeeeEcCCCCEEEEEEeeeEEEEEEeccccccCCCceEEEEEecCCCEEEE---CCC----------CeEEE
Confidence 44555544421 22346899999999888875432 111222367899999842 211 12445
Q ss_pred EecceeEEEEE
Q 038042 123 IAHTPVEAFVI 133 (162)
Q Consensus 123 ~a~~~~~l~~i 133 (162)
.+.++++++++
T Consensus 311 ~n~~~l~~l~f 321 (397)
T 2phl_A 311 KATSNVNFTGF 321 (397)
T ss_dssp EESSSEEEEEE
T ss_pred EeCCCeEEEEE
Confidence 66667777766
No 146
>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}
Probab=46.31 E-value=21 Score=26.42 Aligned_cols=40 Identities=15% Similarity=0.160 Sum_probs=27.7
Q ss_pred CCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 54 ERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 54 ~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
.|+... ..-+.+.+.+|++|++.+.. +|. . ..+++||.+-
T Consensus 55 ~g~~~v-~~~p~dE~~~VleG~~~lt~-~g~--~---~~~~~Gd~~~ 94 (238)
T 3myx_A 55 GTALSV-EAYPYTEMLVMHRGSVTLTS-GTD--S---VTLSTGESAV 94 (238)
T ss_dssp CSEEEE-SSCSSEEEEEEEESEEEEEE-TTE--E---EEEETTCEEE
T ss_pred cccccc-ccCCCcEEEEEEEeEEEEEC-CCe--E---EEEcCCCEEE
Confidence 555544 22346789999999999987 442 2 3578998774
No 147
>3cjx_A Protein of unknown function with A cupin-like FOL; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.60A {Ralstonia eutropha}
Probab=45.40 E-value=46 Score=23.01 Aligned_cols=48 Identities=8% Similarity=0.032 Sum_probs=33.6
Q ss_pred ceeeeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeeec
Q 038042 47 LKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCGE 101 (162)
Q Consensus 47 ~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~Ge 101 (162)
.....|++|..+-.-........+|++|..+... .+ . ..+.+|+++=+
T Consensus 45 v~lvr~~pG~~~p~H~H~g~ee~~VL~G~f~~~~-~~-~-----~~~~aGd~~~~ 92 (165)
T 3cjx_A 45 VMRASFAPGLTLPLHFHTGTVHMYTISGCWYYTE-YP-G-----QKQTAGCYLYE 92 (165)
T ss_dssp EEEEEECTTCBCCEEEESSCEEEEEEESEEEETT-CT-T-----SCEETTEEEEE
T ss_pred EEEEEECCCCcCCcccCCCCEEEEEEEEEEEECC-Cc-e-----EEECCCeEEEe
Confidence 4568899999887777777888999999987521 11 1 23567887754
No 148
>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*
Probab=44.49 E-value=43 Score=23.42 Aligned_cols=34 Identities=12% Similarity=0.062 Sum_probs=23.9
Q ss_pred CeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 66 EKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 66 ~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
..+++|++|.+.+...+.....+ ...+++||++-
T Consensus 97 ~E~~~Vl~G~~~~~i~~~~g~~~-~~~l~~GD~v~ 130 (190)
T 1x82_A 97 AEVYVALKGKGGMLLQTPEGDAK-WISMEPGTVVY 130 (190)
T ss_dssp CEEEEEEESCEEEEEECTTCCEE-EEEECTTCEEE
T ss_pred CEEEEEEcCEEEEEEcCcCCcEE-EEEECCCcEEE
Confidence 58999999999998754321111 24689999874
No 149
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A
Probab=39.64 E-value=53 Score=26.75 Aligned_cols=43 Identities=12% Similarity=0.026 Sum_probs=31.3
Q ss_pred HHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeee
Q 038042 39 FLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPT 81 (162)
Q Consensus 39 ~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~ 81 (162)
.+.-+--.+....+++|..+..-=..+..+++|++|+..+-..
T Consensus 57 ~l~~~gvs~~r~~i~pggl~~Ph~h~a~ei~yVl~G~g~vg~v 99 (459)
T 2e9q_A 57 EFQCAGVNMIRHTIRPKGLLLPGFSNAPKLIFVAQGFGIRGIA 99 (459)
T ss_dssp HHHHHTEEEEEEEECTTEEEEEEEESSCEEEEEEECEEEEEEC
T ss_pred hhccCceEEEEEEEcCCCEecceecCCceEEEEEeeEEEEEEE
Confidence 3433333445688999998866556689999999999888654
No 150
>1r1p_A GRB2-related adaptor protein 2; SH2, GADS, phosphopeptide, peptide binding protein; HET: PTR; 1.80A {Mus musculus} SCOP: d.93.1.1 PDB: 1r1q_A* 1r1s_A*
Probab=38.96 E-value=50 Score=20.41 Aligned_cols=36 Identities=8% Similarity=0.110 Sum_probs=27.7
Q ss_pred hhhCcccc-ccCHHHHHHHHhhceeeeecCCCEEEecCCccC
Q 038042 26 LVLHQVFD-RIDEHFLNAMLDLLKLVPYTERSILVHEGSGVE 66 (162)
Q Consensus 26 L~~~~lF~-~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~ 66 (162)
|...++|. .++.++.+.++... +.|.+++++.+...
T Consensus 6 l~~~~Wyhg~isR~~Ae~lL~~~-----~~G~FLVR~S~~~~ 42 (100)
T 1r1p_A 6 IEFPEWFHEGLSRHQAENLLMGK-----DIGFFIIRASQSSP 42 (100)
T ss_dssp CTTTTTSCTTCCHHHHHHHHHTS-----CTTBEEEEECSSST
T ss_pred eccCCccccCCCHHHHHHHhcCC-----CCCEEEEEecCCCC
Confidence 55667775 78889988888653 79999999987543
No 151
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=38.59 E-value=28 Score=25.88 Aligned_cols=46 Identities=9% Similarity=0.300 Sum_probs=30.3
Q ss_pred eeeecCCCEEEecC--CccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 49 LVPYTERSILVHEG--SGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 49 ~~~~~~ge~I~~~G--~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
...+++|...-..- ...+.+.+|++|++++.. +++. ..+++||.+-
T Consensus 66 ~~~l~pg~~~~~~~~~~~~ee~~~Vl~G~l~~~~-~~~~-----~~L~~GD~~~ 113 (274)
T 1sef_A 66 IATFHKNGQQTTGFGGDGIQTLVYVIDGRLRVSD-GQET-----HELEAGGYAY 113 (274)
T ss_dssp EEEEEEEEEECSCSSBTTEEEEEEEEESEEEEEC-SSCE-----EEEETTEEEE
T ss_pred EEEECCCCcCCCCCCCCCceEEEEEEEeEEEEEE-CCEE-----EEECCCCEEE
Confidence 35666765543221 235678999999999987 4432 4678999774
No 152
>1vr3_A Acireductone dioxygenase; 13543033, structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.06A {Mus musculus} SCOP: b.82.1.6
Probab=36.66 E-value=64 Score=22.95 Aligned_cols=35 Identities=11% Similarity=0.165 Sum_probs=23.8
Q ss_pred cCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 65 VEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 65 ~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
...+++|++|.......++....+. ..+++||++-
T Consensus 104 ~~Ei~yVleG~G~f~i~d~~d~~~~-i~v~~GDlIi 138 (191)
T 1vr3_A 104 DEEIRYILEGSGYFDVRDKEDKWIR-ISMEKGDMIT 138 (191)
T ss_dssp SCEEEEEEEEEEEEEEECTTSCEEE-EEEETTEEEE
T ss_pred cceEEEEEeceEEEEECCCCCeEEE-EEECCCCEEE
Confidence 3679999999998887643111211 2578999884
No 153
>3o14_A Anti-ecfsigma factor, CHRR; cupin, structural genomics, joint center for structura genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Marinobacter aquaeolei}
Probab=36.25 E-value=1.2e+02 Score=21.89 Aligned_cols=63 Identities=8% Similarity=0.062 Sum_probs=40.5
Q ss_pred hceeeeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeeecccccCccccccCCCCcceeEEEe-
Q 038042 46 LLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCGEELLPRASVLQLGGLPISTRTVIA- 124 (162)
Q Consensus 46 ~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~Ge~~l~~~~~~~~~~~~~~~~tv~a- 124 (162)
......+++|..+-........ .||++|.+. ++. ..+.+|+|+-.. . -+..+..|
T Consensus 147 ~v~l~r~~~G~~~~~~~hgG~E-ilVL~G~~~----d~~------~~~~~GsWlR~P---~----------gs~h~~~ag 202 (223)
T 3o14_A 147 TVTHRKLEPGANLTSEAAGGIE-VLVLDGDVT----VND------EVLGRNAWLRLP---E----------GEALSATAG 202 (223)
T ss_dssp EEEEEEECTTCEEEECCSSCEE-EEEEEEEEE----ETT------EEECTTEEEEEC---T----------TCCEEEEEE
T ss_pred EEEEEEECCCCccCCCCCCcEE-EEEEEeEEE----ECC------ceECCCeEEEeC---C----------CCccCcEEC
Confidence 3456888999999887775555 599999964 221 346788886421 0 23345555
Q ss_pred cceeEEEE
Q 038042 125 HTPVEAFV 132 (162)
Q Consensus 125 ~~~~~l~~ 132 (162)
.+.|.+|.
T Consensus 203 ~~g~~i~~ 210 (223)
T 3o14_A 203 ARGAKIWM 210 (223)
T ss_dssp EEEEEEEE
T ss_pred CCCeEEEE
Confidence 56776664
No 154
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=34.52 E-value=68 Score=26.20 Aligned_cols=49 Identities=8% Similarity=-0.013 Sum_probs=33.8
Q ss_pred ccccCHHHHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeee
Q 038042 32 FDRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPT 81 (162)
Q Consensus 32 F~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~ 81 (162)
|..=+ ..+.-+--.+....+.+|..+..-=..+..+++|++|...+-..
T Consensus 36 ~~~~~-~~l~~~gvs~~r~~l~Pggl~~Ph~~~a~ei~yV~~G~g~~g~v 84 (476)
T 1fxz_A 36 WNPNN-KPFQCAGVALSRCTLNRNALRRPSYTNGPQEIYIQQGKGIFGMI 84 (476)
T ss_dssp CCTTS-HHHHHHTCEEEEEEECTTEEEEEEEESSCEEEEEEECCEEEEEE
T ss_pred eCCCC-hhhccCceEEEEEEEcCCCEecceecCCceEEEEEecEEEEEEE
Confidence 44433 33333333445688999998866666789999999998887655
No 155
>2el8_A Signal-transducing adaptor protein 2; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction, structural genomics; NMR {Homo sapiens}
Probab=33.92 E-value=86 Score=20.03 Aligned_cols=38 Identities=5% Similarity=0.011 Sum_probs=27.8
Q ss_pred hhhCccc-cccCHHHHHHHHhhceeeeecCCCEEEecCCccCe
Q 038042 26 LVLHQVF-DRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEK 67 (162)
Q Consensus 26 L~~~~lF-~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ 67 (162)
+...|+| ..++.++.+.++.... +.|.+++++.+....
T Consensus 18 ~~~~~WyhG~isR~eAe~lL~~~~----~~G~FLVR~S~~~~g 56 (118)
T 2el8_A 18 ALETPSCFLKVSRLEAQLLLERYP----ECGNLLLRPSGDGAD 56 (118)
T ss_dssp CSSSCTTCCCCCHHHHHHHHHHSS----TTCSBEEEECCSSSS
T ss_pred ccCCCceecCCCHHHHHHHHhhCC----CCcEEEEeeCCCCCC
Confidence 4456665 4789899888875432 889999999876543
No 156
>2dlz_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.91 E-value=78 Score=20.16 Aligned_cols=36 Identities=11% Similarity=0.176 Sum_probs=27.7
Q ss_pred hhhCcccc-ccCHHHHHHHHhhceeeeecCCCEEEecCCccC
Q 038042 26 LVLHQVFD-RIDEHFLNAMLDLLKLVPYTERSILVHEGSGVE 66 (162)
Q Consensus 26 L~~~~lF~-~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~ 66 (162)
+...++|. .++.++.+.++... +.|.+++++.+...
T Consensus 13 l~~~~WyhG~isR~~Ae~lL~~~-----~~G~FLVR~S~~~~ 49 (118)
T 2dlz_A 13 YTAYPWFAGNMERQQTDNLLKSH-----ASGTYLIRERPAEA 49 (118)
T ss_dssp GGGSTTEEESCCHHHHHHHHHHS-----CTTBEEEECCSCSS
T ss_pred cccCCceecCCCHHHHHHHhcCC-----CCCEEEEEeCCCCC
Confidence 55667764 78999999888762 78999999987533
No 157
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=33.49 E-value=96 Score=24.72 Aligned_cols=75 Identities=16% Similarity=0.112 Sum_probs=46.1
Q ss_pred hceeeeecCCCEEEe-cCCccCeEEEEEeeEEEEeee--cCC----------c--eeeeeeeeCCCCeeecccccCcccc
Q 038042 46 LLKLVPYTERSILVH-EGSGVEKMFFIVRGKIWSEPT--TIR----------T--TTFSFNASNDGHFCGEELLPRASVL 110 (162)
Q Consensus 46 ~~~~~~~~~ge~I~~-~G~~~~~ly~I~~G~v~v~~~--~~~----------~--~~~~~~~~~~G~~~Ge~~l~~~~~~ 110 (162)
.+....+.+|.+... =...+..+++|++|..++... ++. . ..+ ...+.+||+|=- +..
T Consensus 250 s~a~~~l~~g~~~~pH~h~~A~Ei~~V~~G~~~v~~v~~~g~~~~~~~~~~~~~~~~~-~~~l~~Gdv~vv---P~g--- 322 (416)
T 1uij_A 250 FLSSVDINEGALLLPHFNSKAIVILVINEGDANIELVGIKEQQQKQKQEEEPLEVQRY-RAELSEDDVFVI---PAA--- 322 (416)
T ss_dssp EEEEEEECTTEEEEEEEESSCEEEEEEEESEEEEEEEEEC------------CCEEEE-EEEEETTCEEEE---CTT---
T ss_pred ceEEEEEcCCcEecceEcCCCcEEEEEEeeEEEEEEEcCCCccccccccccccceEEE-EEEecCCcEEEE---CCC---
Confidence 445678888877632 334578999999998888654 331 0 133 257899999842 211
Q ss_pred ccCCCCcceeEEEecceeEEEEEe
Q 038042 111 QLGGLPISTRTVIAHTPVEAFVIE 134 (162)
Q Consensus 111 ~~~~~~~~~~tv~a~~~~~l~~i~ 134 (162)
....+.+.++.+++.+.
T Consensus 323 -------~~h~~~n~~~~~~l~f~ 339 (416)
T 1uij_A 323 -------YPFVVNATSNLNFLAFG 339 (416)
T ss_dssp -------CCEEEEESSSEEEEEEE
T ss_pred -------CeEEEEcCCCeEEEEEE
Confidence 12345555777777764
No 158
>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A
Probab=31.46 E-value=57 Score=21.27 Aligned_cols=32 Identities=13% Similarity=-0.023 Sum_probs=20.6
Q ss_pred CccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 63 SGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 63 ~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
...-.+.+|++|...+.. +++. ..+++||++=
T Consensus 36 h~~~~i~~v~~G~~~~~i-~~~~-----~~l~~Gd~~~ 67 (164)
T 2arc_A 36 MKGYILNLTIRGQGVVKN-QGRE-----FVCRPGDILL 67 (164)
T ss_dssp CSSEEEEEEEEECEEEEE-TTEE-----EEECTTCEEE
T ss_pred CCceEEEEEEEeEEEEEE-CCEE-----EEecCCeEEE
Confidence 334468899999988876 3321 3466777653
No 159
>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}
Probab=29.78 E-value=28 Score=24.08 Aligned_cols=31 Identities=3% Similarity=-0.038 Sum_probs=22.8
Q ss_pred ccCeEEEEEe--eEEEEeeecCCceeeeeeeeCCCCeee
Q 038042 64 GVEKMFFIVR--GKIWSEPTTIRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 64 ~~~~ly~I~~--G~v~v~~~~~~~~~~~~~~~~~G~~~G 100 (162)
....+|+|++ |.+++.. +|+. ..+++||++-
T Consensus 65 ~~~E~~yVLe~~G~g~v~i-dge~-----~~l~~GD~v~ 97 (157)
T 4h7l_A 65 EHQEIYVVLDHAAHATIEL-NGQS-----YPLTKLLAIS 97 (157)
T ss_dssp SCEEEEEEEEECTTCEEEE-TTEE-----EECCTTEEEE
T ss_pred CCcEEEEEEecCcEEEEEE-CCEE-----EEeCCCCEEE
Confidence 3457999999 9988887 4421 3578999874
No 160
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*
Probab=29.08 E-value=98 Score=23.87 Aligned_cols=34 Identities=12% Similarity=0.142 Sum_probs=23.8
Q ss_pred cCeEEEEEeeEEEEeeec-CCceeeeeeeeCCCCeee
Q 038042 65 VEKMFFIVRGKIWSEPTT-IRTTTFSFNASNDGHFCG 100 (162)
Q Consensus 65 ~~~ly~I~~G~v~v~~~~-~~~~~~~~~~~~~G~~~G 100 (162)
...+++|++|.+++...+ +.... ...+.+||++-
T Consensus 71 ~~E~~~Vl~G~~~~~v~~~~g~~~--~~~L~~GD~v~ 105 (350)
T 1juh_A 71 HYENFYCNKGSFQLWAQSGNETQQ--TRVLSSGDYGS 105 (350)
T ss_dssp CEEEEEEEESEEEEEEEETTSCCE--EEEEETTCEEE
T ss_pred ceEEEEEEEEEEEEEECCcCCceE--EEEECCCCEEE
Confidence 568889999999998754 11111 14688999864
No 161
>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella typhimurium LT2}
Probab=27.29 E-value=2e+02 Score=21.63 Aligned_cols=91 Identities=12% Similarity=-0.049 Sum_probs=56.8
Q ss_pred cccCHHHHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeeecCCceeeeeeeeCCCCeeecc---cccCccc
Q 038042 33 DRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPTTIRTTTFSFNASNDGHFCGEE---LLPRASV 109 (162)
Q Consensus 33 ~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~~~~~~~~~G~~~Ge~---~l~~~~~ 109 (162)
..++++...+.--.+.....++|+.+-.+-+.-+-..+++.|.+.+.. +|. .+. ..-...++|.+. ++--
T Consensus 17 ~~itp~~a~~~y~~f~~~~L~~Ge~~~~~~~~~E~~iv~l~G~~~V~~-~g~--~~~-~~g~R~svF~~~~p~~lYv--- 89 (270)
T 2qjv_A 17 QHISPQNAGWEYVGFDVWQLXAGESITLPSDERERCLVLVAGLASVXA-ADS--FFY-RIGQRMSPFERIPAYSVYL--- 89 (270)
T ss_dssp EEECHHHHTSSSCEEEEEEECTTCEEEECCSSEEEEEEEEESCEEEEE-TTE--EEE-EECCCSSGGGCSCCCEEEE---
T ss_pred EEeCCCCCCcEEeEEEEEEecCCCEEEecCCCcEEEEEEecceEEEEE-CCE--EEe-ccccccccccCCCCcEEEE---
Confidence 445555544433445667889999997777777888899999998887 442 121 012334555532 2111
Q ss_pred cccCCCCcceeEEEecceeEEEEEeH
Q 038042 110 LQLGGLPISTRTVIAHTPVEAFVIEA 135 (162)
Q Consensus 110 ~~~~~~~~~~~tv~a~~~~~l~~i~~ 135 (162)
.. -...+++|.++++++..+.
T Consensus 90 ---p~--g~~v~i~a~~~~~~~v~sA 110 (270)
T 2qjv_A 90 ---PH--HTEAXVTAETDLELAVCSA 110 (270)
T ss_dssp ---CS--SCCEEEEESSSEEEEEEEE
T ss_pred ---CC--CCEEEEEecCCceEEEEee
Confidence 11 2357899999999887765
No 162
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=26.09 E-value=1.2e+02 Score=24.27 Aligned_cols=79 Identities=14% Similarity=0.119 Sum_probs=47.1
Q ss_pred HHHhhceeeeecCCCEEEe-cCCccCeEEEEEeeEEEEeee--cCC---------c--eeeeeeeeCCCCeeecccccCc
Q 038042 42 AMLDLLKLVPYTERSILVH-EGSGVEKMFFIVRGKIWSEPT--TIR---------T--TTFSFNASNDGHFCGEELLPRA 107 (162)
Q Consensus 42 ~l~~~~~~~~~~~ge~I~~-~G~~~~~ly~I~~G~v~v~~~--~~~---------~--~~~~~~~~~~G~~~Ge~~l~~~ 107 (162)
.+--.+....+.+|.+... =.-.+..+++|++|.+++... ++. . ..+ ...+.+||+|=- +..
T Consensus 263 ~l~is~a~v~l~pG~m~~pH~hp~A~Ei~~V~~G~~~v~vv~~~g~~~~~~~~~~~~~r~~-~~~l~~Gdv~vv---P~g 338 (434)
T 2ea7_A 263 DLDVFISSVDMKEGALLLPHYSSKAIVIMVINEGEAKIELVGLSDQQQQKQQEESLEVQRY-RAELSEDDVFVI---PAA 338 (434)
T ss_dssp HHTEEEEEEEECTTEEEEEEEESSCEEEEEEEESCEEEEEEEEEECCCCTTSCCCEEEEEE-EEEECTTCEEEE---CTT
T ss_pred ccCcceEEEEEcCCeeeccEEcCCCCEEEEEEeeEEEEEEEecCccccccccccCcceEEE-EEEecCCcEEEE---CCC
Confidence 3333455688888877632 234568999999998887644 221 1 123 257899999842 211
Q ss_pred cccccCCCCcceeEEEecceeEEEEEe
Q 038042 108 SVLQLGGLPISTRTVIAHTPVEAFVIE 134 (162)
Q Consensus 108 ~~~~~~~~~~~~~tv~a~~~~~l~~i~ 134 (162)
....+.+.++..++.+.
T Consensus 339 ----------~~h~~~n~~~~~~v~f~ 355 (434)
T 2ea7_A 339 ----------YPVAINATSNLNFFAFG 355 (434)
T ss_dssp ----------CCEEEEESSSEEEEEEE
T ss_pred ----------CeEEEEcCCCeEEEEEE
Confidence 12344555666666653
No 163
>3eaz_A Tyrosine-protein kinase CSK; SH2, disulfide, oxidized reduced, ATP-binding, cell membrane, cytoplasm, membrane, nucleotide-binding, phosphoprotein; 1.31A {Homo sapiens} PDB: 3eac_A
Probab=25.48 E-value=88 Score=19.31 Aligned_cols=37 Identities=22% Similarity=0.198 Sum_probs=27.4
Q ss_pred hhhCcccc-ccCHHHHHHHHhhceeeeecCCCEEEecCCccCe
Q 038042 26 LVLHQVFD-RIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEK 67 (162)
Q Consensus 26 L~~~~lF~-~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ 67 (162)
|...|+|. .++.++.+.++.. -+.|.+++++.+....
T Consensus 5 L~~~~Wyhg~isr~~Ae~lL~~-----~~~G~FLVR~S~~~~g 42 (106)
T 3eaz_A 5 LSLMPWFHGKITREQAERLLYP-----PETGLFLVRESTNYPG 42 (106)
T ss_dssp GGGCTTBCCSCCHHHHHHHTCS-----CCTTEEEEEECTTSTT
T ss_pred cccCCCcCCCCCHHHHHHHhCC-----CCCCEEEEEECCCCCC
Confidence 66677775 6788888888753 2799999999875443
No 164
>2lnw_A VAV-2, guanine nucleotide exchange factor VAV2; signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2lnx_A
Probab=25.44 E-value=1.4e+02 Score=19.15 Aligned_cols=39 Identities=13% Similarity=0.218 Sum_probs=28.9
Q ss_pred hhhCcccc-ccCHHHHHHHHhhceeeeecCCCEEEecCCccCeEE
Q 038042 26 LVLHQVFD-RIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEKMF 69 (162)
Q Consensus 26 L~~~~lF~-~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly 69 (162)
|...++|. .++.++.+.++... +.|.+++++.+....-|
T Consensus 19 l~~~~WyhG~isR~eAe~lL~~~-----~~G~FLVR~S~~~~g~y 58 (122)
T 2lnw_A 19 YTAYPWFAGNMERQQTDNLLKSH-----ASGTYLIRERPAEAERF 58 (122)
T ss_dssp STTSTTBCCSCCHHHHHHHHHHS-----CTTBEEEEECCCSSEEE
T ss_pred cccCcCCCcCCCHHHHHHHhcCC-----CCCeEEEEeCCCCCCcE
Confidence 55667765 78999998888652 69999999987655433
No 165
>3us4_A Megakaryocyte-associated tyrosine-protein kinase; SH2 domain, signaling protein, structural genomics, joint CE structural genomics, JCSG; 1.50A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jwo_A
Probab=25.16 E-value=93 Score=18.84 Aligned_cols=36 Identities=19% Similarity=0.128 Sum_probs=25.6
Q ss_pred hhCccc-cccCHHHHHHHHhhceeeeecCCCEEEecCCccCe
Q 038042 27 VLHQVF-DRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEK 67 (162)
Q Consensus 27 ~~~~lF-~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ 67 (162)
...|+| ..++.++.+.++.. -+.|.+++++.+....
T Consensus 3 ~~~~Wyhg~isr~~Ae~lL~~-----~~~G~FLVR~S~~~~g 39 (98)
T 3us4_A 3 SLMPWFHGKISGQEAVQQLQP-----PEDGLFLVRESARHPG 39 (98)
T ss_dssp TTCTTBCCSCCHHHHHHHTCS-----CCTTCEEEEECSSSTT
T ss_pred ccCcccCCCCCHHHHHHHccC-----CCCcEEEEEeCCCCCC
Confidence 445665 46788888888753 2789999999865443
No 166
>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}
Probab=25.10 E-value=1.6e+02 Score=24.30 Aligned_cols=43 Identities=12% Similarity=0.006 Sum_probs=31.4
Q ss_pred HHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeee
Q 038042 39 FLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPT 81 (162)
Q Consensus 39 ~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~ 81 (162)
.+.-+--.+....+.+|..++.-=..+..+++|++|...+-..
T Consensus 40 ~L~~~gvs~~R~~i~pggl~lPh~~~A~ei~~V~qG~g~~G~v 82 (496)
T 3ksc_A 40 QFRCAGVALSRATLQRNALRRPYYSNAPQEIFIQQGNGYFGMV 82 (496)
T ss_dssp HHHHHTCEEEEEEECTTEEEEEEEESSCEEEEEEECCEEEEEE
T ss_pred hhccCCceEEEEEecCCCEeCceEcCCCEEEEEEeCceEEEEE
Confidence 4444444445688999998866666899999999998776543
No 167
>1d4t_A T cell signal transduction molecule SAP; SH2 domain, tyrosine kinase, signal transduction, peptide recognition, signaling protein; 1.10A {Homo sapiens} SCOP: d.93.1.1 PDB: 1d1z_A 1d4w_A* 1m27_A*
Probab=24.75 E-value=94 Score=19.08 Aligned_cols=35 Identities=17% Similarity=0.204 Sum_probs=24.3
Q ss_pred hCccc-cccCHHHHHHHHhhceeeeecCCCEEEecCCccC
Q 038042 28 LHQVF-DRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVE 66 (162)
Q Consensus 28 ~~~lF-~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~ 66 (162)
..++| ..++.++.+.++.... +.|.+++++.+...
T Consensus 3 ~~~Wyhg~isR~~Ae~lL~~~~----~~G~FLVR~S~~~~ 38 (104)
T 1d4t_A 3 AVAVYHGKISRETGEKLLLATG----LDGSYLLRDSESVP 38 (104)
T ss_dssp TCTTBCCSCCHHHHHHHHHHHC----CTTEEEEEECSSST
T ss_pred CCceEccCCCHHHHHHHHHhcC----CCCEEEEeeCCCCC
Confidence 34444 4678888888875422 67999999986443
No 168
>1mil_A SHC adaptor protein; SH2 domain, phosphorylation, collagen, growth regulation, transforming protein, alternative initiation; 2.70A {Homo sapiens} SCOP: d.93.1.1 PDB: 1tce_A*
Probab=24.21 E-value=49 Score=20.60 Aligned_cols=33 Identities=21% Similarity=0.284 Sum_probs=24.6
Q ss_pred hhhCcccc-ccCHHHHHHHHhhceeeeecCCCEEEecCCcc
Q 038042 26 LVLHQVFD-RIDEHFLNAMLDLLKLVPYTERSILVHEGSGV 65 (162)
Q Consensus 26 L~~~~lF~-~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~ 65 (162)
|...++|. .++.++.+.++. +.|.+++++.+..
T Consensus 4 l~~~~Wyhg~isR~~Ae~lL~-------~~G~FLVR~S~~~ 37 (104)
T 1mil_A 4 LRGEPWFHGKLSRREAEALLQ-------LNGDFLVRESTTT 37 (104)
T ss_dssp TTTCTTBCSSCCHHHHHTTCC-------STTEEEEEECCSS
T ss_pred cccCCcCCCCCCHHHHHHHhc-------cCCcEEEEeCCCC
Confidence 45566665 678888877775 5899999998754
No 169
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=24.21 E-value=1.6e+02 Score=24.06 Aligned_cols=42 Identities=14% Similarity=0.033 Sum_probs=30.8
Q ss_pred HHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeee
Q 038042 40 LNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPT 81 (162)
Q Consensus 40 l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~ 81 (162)
+.-+--.+....+.+|..+..-=..+..+++|++|+..+-..
T Consensus 40 l~~~gv~~~r~~i~pggl~~Ph~~~~~~i~yV~~G~g~vg~v 81 (493)
T 2d5f_A 40 LQCAGVTVSKRTLNRNGLHLPSYSPYPQMIIVVQGKGAIGFA 81 (493)
T ss_dssp HHHHTCEEEEEEECTTEEEEEEECSSCEEEEEEECEEEEEEC
T ss_pred hccCCEEEEEEEeCCCcEeCceecCCCeEEEEEeCEEEEEEE
Confidence 333333455689999999866666678999999999887654
No 170
>3k2m_A Proto-oncogene tyrosine-protein kinase ABL1; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_A 3t04_A 1ab2_A
Probab=23.75 E-value=1e+02 Score=19.25 Aligned_cols=37 Identities=19% Similarity=0.203 Sum_probs=26.4
Q ss_pred hhhCcccc-ccCHHHHHHHHhhceeeeecCCCEEEecCCccCe
Q 038042 26 LVLHQVFD-RIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEK 67 (162)
Q Consensus 26 L~~~~lF~-~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ 67 (162)
|...++|. .++.++.+.++.. -+.|.+++++.+....
T Consensus 2 L~~~~Wyhg~isR~~Ae~lL~~-----~~~G~FLVR~S~~~~g 39 (112)
T 3k2m_A 2 LEKHSWYHGPVSRNAAEYLLSS-----GINGSFLVRESESSPG 39 (112)
T ss_dssp GGGSTTEEESCCHHHHHHHTTT-----CCTTEEEEEECSSSTT
T ss_pred CccCcceeeCCCHHHHHHHhcc-----CCCceEEEEeCCCCCC
Confidence 44556664 6788888887753 2689999999865443
No 171
>3tkz_A Tyrosine-protein phosphatase non-receptor type 11; SH2 domain, protein protein interactions, PTR residues, HYDR peptide complex; HET: PTR; 1.80A {Homo sapiens} PDB: 3tl0_A* 1aya_A* 1ayb_A* 1ayc_A* 1ayd_A
Probab=21.55 E-value=1.1e+02 Score=18.85 Aligned_cols=38 Identities=13% Similarity=0.081 Sum_probs=25.7
Q ss_pred hhhCcccc-ccCHHHHHHHHhhceeeeecCCCEEEecCCccCe
Q 038042 26 LVLHQVFD-RIDEHFLNAMLDLLKLVPYTERSILVHEGSGVEK 67 (162)
Q Consensus 26 L~~~~lF~-~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ 67 (162)
|.+.++|. .++.++.+.++.... +.|.+++++.+....
T Consensus 4 l~~~~Wyhg~isr~~Ae~lL~~~~----~~G~FLVR~S~~~~g 42 (109)
T 3tkz_A 4 MTSRRWFHPNITGVEAENLLLTRG----VDGSFLARPSKSNPG 42 (109)
T ss_dssp ---CCSBCTTCCHHHHHHHHHHHC----CTTEEEEEECSSSTT
T ss_pred cccCCceecCCCHHHHHHHHhcCC----CCCEEEEEecCCCCC
Confidence 55667764 678888888776532 689999999875443
No 172
>1ka6_A SH2 domain protein 1A; SH2 domain, protein-peptide complex, immune system; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1ka7_A
Probab=20.79 E-value=1.3e+02 Score=19.37 Aligned_cols=35 Identities=17% Similarity=0.204 Sum_probs=24.3
Q ss_pred hCccc-cccCHHHHHHHHhhceeeeecCCCEEEecCCccC
Q 038042 28 LHQVF-DRIDEHFLNAMLDLLKLVPYTERSILVHEGSGVE 66 (162)
Q Consensus 28 ~~~lF-~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~ 66 (162)
..++| ..++.++.+.++.... +.|.+++++.+...
T Consensus 3 ~~~WyhG~isR~eAe~lL~~~~----~~G~FLVR~S~~~~ 38 (128)
T 1ka6_A 3 AVAVYHGKISRETGEKLLLATG----LDGSYLLRDSESVP 38 (128)
T ss_dssp CCSSBCCSCCHHHHHHHHHHHC----CTTCEEEEECSSST
T ss_pred CCcccCCCCCHHHHHHHHhcCC----CCCEEEEeecCCCC
Confidence 34454 4678888888875422 67999999986433
No 173
>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}
Probab=20.66 E-value=1.8e+02 Score=23.69 Aligned_cols=43 Identities=7% Similarity=0.007 Sum_probs=30.9
Q ss_pred HHHHHHhhceeeeecCCCEEEecCCccCeEEEEEeeEEEEeee
Q 038042 39 FLNAMLDLLKLVPYTERSILVHEGSGVEKMFFIVRGKIWSEPT 81 (162)
Q Consensus 39 ~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~ 81 (162)
++.-.--.+....+.+|..+..-=..+..+++|++|...+-..
T Consensus 44 ~l~~~gvs~~R~~i~P~gl~~Ph~h~a~ei~yV~qG~g~~g~v 86 (465)
T 3qac_A 44 EFRCAGVSVIRRTIEPHGLLLPSFTSAPELIYIEQGNGITGMM 86 (465)
T ss_dssp HHHHHTCEEEEEEECTTEEEEEEEESSCEEEEEEECEEEEEEE
T ss_pred hhcccceEEEEEEEcCCcCcccEEcCCCEEEEEEECcEEEEEe
Confidence 3443333344578899988877777899999999998876543
No 174
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=20.13 E-value=2.5e+02 Score=22.52 Aligned_cols=59 Identities=15% Similarity=0.229 Sum_probs=37.7
Q ss_pred HHHHhhceeeeecCCCEEE-ecCCccCeEEEEEeeEEEEeeecC--C--------c-eeeeeeeeCCCCeee
Q 038042 41 NAMLDLLKLVPYTERSILV-HEGSGVEKMFFIVRGKIWSEPTTI--R--------T-TTFSFNASNDGHFCG 100 (162)
Q Consensus 41 ~~l~~~~~~~~~~~ge~I~-~~G~~~~~ly~I~~G~v~v~~~~~--~--------~-~~~~~~~~~~G~~~G 100 (162)
..+--.+....+.+|.+.. +=.-.+..+.+|++|.+++...+. . . +.++ ..+++||+|=
T Consensus 277 ~~l~is~~~v~l~pg~m~~PH~hp~A~ei~~V~~G~~~v~vv~~~~~~~~~~~g~~~~~~~-~~l~~GdV~v 347 (445)
T 2cav_A 277 RDLDILLNCLQMNEGALFVPHYNSRATVILVANEGRAEVELVGLEQQQQQGLESMQLRRYA-ATLSEGDIIV 347 (445)
T ss_dssp HHHTEEEEEEEECTTEEEEEEEESSCEEEEEEEESCEEEEEEEC-----------CCEEEE-EEECTTCEEE
T ss_pred ccCCCceEEEEeeCCceeeeEECCCCcEEEEEEeeEEEEEEEeCCCcccccccCcceEEEE-eEecCCcEEE
Confidence 3333345567888887663 223456899999999888765422 1 1 1233 5799999984
Done!