BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038043
(387 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SD53|Y3720_ARATH UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=1
SV=1
Length = 476
Score = 139 bits (349), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 120/409 (29%), Positives = 187/409 (45%), Gaps = 48/409 (11%)
Query: 7 IRKVPEHLRTENVKAYEPQIIAIGPLNHYLPREETHLAEMQKHKVLYLKKLLQRRGEDLS 66
I +VPE N KAY+P++++IGP HY E HL +Q+HK L+ L +
Sbjct: 48 IFRVPESFVALNPKAYKPKVVSIGPY-HY---GEKHLQMIQQHKPRLLQLFLDEAKKKDV 103
Query: 67 SLGRYLVAMRELEEKARCCYAEPI---HMLLLEFVEMLLLDACFIVELFRKFELDIWEDD 123
+ A+ +LE+K R Y+E + H L+ M++LD CFI+ +F +I +
Sbjct: 104 EENVLVKAVVDLEDKIRKSYSEELKTGHDLMF----MMVLDGCFILMVFLIMSGNIELSE 159
Query: 124 DNVFMTSWVRKKLGRDLLLANNQLPLFVLQQFYDDTKMPEDQETNFQDLILGFFSKVLTV 183
D +F W+ + DLLL NQ+P FVLQ Y +K+ + N + FF +
Sbjct: 160 DPIFSIPWLLSSIQSDLLLLENQVPFFVLQTLYVGSKIGVSSDLN--RIAFHFFKNPIDK 217
Query: 184 QLLNVPRIGPFYEV--DTKTKHLLGFICDYHW-------------------EWVPRFVPP 222
+ G ++E + K KHLL I + E VP
Sbjct: 218 E-------GSYWEKHRNYKAKHLLDLIRETFLPNTSESDKASSPHVQVQLHEGKSGNVPS 270
Query: 223 PYDENWNFIISATNLKEAGIKF--ERIEGESLLSIDFDEDAGILKIPTLTIDDDIESFFR 280
+ I+SA L+ GIKF R + +S+L++ ++ L+IP L D I SFF
Sbjct: 271 VDSKAVPLILSAKRLRLQGIKFRLRRSKEDSILNVRLKKNK--LQIPQLRFDGFISSFFL 328
Query: 281 NISVYEQFFPFDEYAPLINYLKFMDSLINTAKDVELLFENK-ILHNCLGDDEVVANMFNR 339
N +EQF+ D + Y+ FM L+N +DV L +K I+ N G + V+ F
Sbjct: 329 NCVAFEQFYT-DSSNEITTYIVFMGCLLNNEEDVTFLRNDKLIIENHFGSNNEVSEFFKT 387
Query: 340 LGDSVALPLYNFY-GDIFHNVNEYCDRHWKRWIANLMHNYFNTPLAIIS 387
+ V + Y ++F VNEY + + A H +F +P +S
Sbjct: 388 ISKDVVFEVDTSYLNNVFKGVNEYTKKWYNGLWAGFRHTHFESPWTFLS 436
>sp|P0C897|Y3264_ARATH Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana
GN=At3g02645 PE=3 SV=1
Length = 529
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 80/159 (50%), Gaps = 6/159 (3%)
Query: 222 PPYDENWNFIISATNLKEAGIKFERIEGESLLSIDFDEDAGILKIPTLTIDDDIESFFRN 281
PP E I S ++L +AG++F+ ++ ++ FD ++G +P + +D + E+ RN
Sbjct: 337 PPLVEELT-IPSVSDLHKAGVRFKPTAHGNISTVTFDSNSGQFYLPVINLDINTETVLRN 395
Query: 282 ISVYEQFFPFDEYAPLI--NYLKFMDSLINTAKDVELLFENKILHNCLGDDEVVANMFNR 339
+ YE + PL+ Y + ++ +I++ +DV LL E +L + L D+ A M+N
Sbjct: 396 LVAYE---ATNTSGPLVFTRYTELINGIIDSEEDVRLLREQGVLVSRLKSDQEAAEMWNG 452
Query: 340 LGDSVALPLYNFYGDIFHNVNEYCDRHWKRWIANLMHNY 378
+ SV L F +VN Y WK I L+ Y
Sbjct: 453 MSKSVRLTKVGFLDKTIEDVNRYYTGRWKVKIGRLVEVY 491
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 74/154 (48%), Gaps = 28/154 (18%)
Query: 10 VPEHLRTENVKAYEPQIIAIGPLNHYLPREETHLAEMQKHKVLYLKKLLQR----RGEDL 65
VP+ L + +Y P ++IGP + P L EM+++K++ +K+ + R DL
Sbjct: 48 VPKALMCSHPDSYTPHRVSIGPYHCLKP----ELHEMERYKLMIARKIRNQYNSFRFHDL 103
Query: 66 SSLGRYLVAMRELEEKARCCYAEPIHMLLLEFVEMLLLDACFIVEL-----FRKFELDIW 120
+ ++ +E K R CY + I + ++ +D+ F++E FRK E I
Sbjct: 104 ------VEKLQSMEIKIRACYHKYIGFNGETLLWIMAVDSSFLIEFLKIYSFRKVETLIN 157
Query: 121 EDDDNVFMTSWVRKKLGRDLLLANNQLPLFVLQQ 154
N + RD+++ NQ+PLFVL++
Sbjct: 158 RVGHNEIL---------RDIMMIENQIPLFVLRK 182
>sp|B7J1U8|METK_BORBZ S-adenosylmethionine synthase OS=Borrelia burgdorferi (strain ZS7)
GN=metK PE=3 SV=1
Length = 392
Score = 36.6 bits (83), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 206 GFICDYHWEWVPRFVPPPYDENWNFIISATNLKEAG-IKFERIEGESLLSIDFDEDAGIL 264
G I Y + F+P PY+ + + A+NL+++G IK+ R + +S ++I++D++ +
Sbjct: 128 GIIFGYACDETKNFLPAPYELANSILKKASNLRKSGAIKWLRPDSKSQVTIEYDKNRNPV 187
Query: 265 KIPTLTI 271
KI + +
Sbjct: 188 KIKNIIV 194
>sp|O50163|METK_BORBU S-adenosylmethionine synthase OS=Borrelia burgdorferi (strain ATCC
35210 / B31 / CIP 102532 / DSM 4680) GN=metK PE=3 SV=1
Length = 392
Score = 36.6 bits (83), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 206 GFICDYHWEWVPRFVPPPYDENWNFIISATNLKEAG-IKFERIEGESLLSIDFDEDAGIL 264
G I Y + F+P PY+ + + A+NL+++G IK+ R + +S ++I++D++ +
Sbjct: 128 GIIFGYACDETKNFLPAPYELANSILKKASNLRKSGAIKWLRPDSKSQVTIEYDKNRNPV 187
Query: 265 KIPTLTI 271
KI + +
Sbjct: 188 KIKNIIV 194
>sp|A8G1U9|GPMI_SHESH 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
OS=Shewanella sediminis (strain HAW-EB3) GN=gpmI PE=3
SV=1
Length = 514
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 9/111 (8%)
Query: 190 RIGPFYEVDTKTKHLLGFICDYHWEWVPRFVPPPY--DENWNFIISATNLKEAGIKFERI 247
R+ YE+ T+ K L + + + Y DEN F+ S+ L G +
Sbjct: 199 RVSQAYELITEGKSL------HQYSNAVEALEAAYARDENDEFVGSSAILDAQGDSAQLA 252
Query: 248 EGESLLSIDFDEDAGILKIPTLTIDDDIESFFRNISVYEQFFPFDEYAPLI 298
+G++L+ ++F D +I +D D + F RN++ F EYA I
Sbjct: 253 DGDALIFMNFRADRA-RQITRSFVDADFDGFERNVTPKAHFVMLTEYAADI 302
>sp|P28877|PMA1_CANAX Plasma membrane ATPase 1 OS=Candida albicans GN=PMA1 PE=1 SV=1
Length = 895
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 57/159 (35%), Gaps = 31/159 (19%)
Query: 148 PLFVLQQFYDDTKMPEDQETNFQDLILGFFSKVLTVQLLNVPRIGPFYEVDTKTKHLLGF 207
PLFVL+ DD +PED N+Q+ + F S+ F + K G
Sbjct: 454 PLFVLKTVEDDHPIPEDVHENYQNTVAEFASR-------------GFRSLGVARKRGEG- 499
Query: 208 ICDYHWEWVPRFVP---PPYDENWNFIISATNLK---------EAGIKFERIEGESLLSI 255
HWE + +P PP D+ + A L GI E L +
Sbjct: 500 ----HWE-ILGIMPCMDPPRDDTAATVNEARRLGLRVKMLTGDAVGIAKETCRQLGLGTN 554
Query: 256 DFDEDAGILKIPTLTIDDDIESFFRNISVYEQFFPFDEY 294
+D D L +I F N + + FP ++Y
Sbjct: 555 IYDADRLGLSGGGDMAGSEIADFVENADGFAEGFPTNKY 593
>sp|Q661P3|METK_BORGA S-adenosylmethionine synthase OS=Borrelia garinii (strain PBi)
GN=metK PE=3 SV=1
Length = 392
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 206 GFICDYHWEWVPRFVPPPYDENWNFIISATNLKEAG-IKFERIEGESLLSIDFDEDAGIL 264
G I Y + F+P PY+ + + A+NL+++G I++ R + +S ++I++D++ +
Sbjct: 128 GIIFGYACDETKNFLPAPYELANSILKKASNLRKSGAIEWLRPDSKSQVTIEYDKNRRPV 187
Query: 265 KIPTLTI 271
KI + +
Sbjct: 188 KIKNIIV 194
>sp|Q9NZJ4|SACS_HUMAN Sacsin OS=Homo sapiens GN=SACS PE=1 SV=2
Length = 4579
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 9/128 (7%)
Query: 32 LNHYLPREETHLAEMQKHKVLYLKKLLQRRGEDLSSLGRYLVAMREL-----EEKARCCY 86
L H LP+ E + + ++YLK L E+LS + L E + +R
Sbjct: 3478 LKHLLPKIENLSYDAKLEHLIYLKNRLSS-AEELSEIKEQLFEKLESLLIIHDANSRLKQ 3536
Query: 87 AEPIHMLLLEFVEMLLLDACFIV-ELFRKFELDIWEDDDNVFMTSWVR--KKLGRDLLLA 143
A+ + + E++L + FI + F+K E I + FMTSWV + +G +L+
Sbjct: 3537 AKHFYDRTVRVFEVMLPEKLFIPNDFFKKLEQLIKPKNHVTFMTSWVEFLRNIGLKYILS 3596
Query: 144 NNQLPLFV 151
QL F
Sbjct: 3597 QQQLLQFA 3604
>sp|Q0SND7|METK_BORAP S-adenosylmethionine synthase OS=Borrelia afzelii (strain PKo)
GN=metK PE=3 SV=1
Length = 392
Score = 33.1 bits (74), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 206 GFICDYHWEWVPRFVPPPYDENWNFIISATNLKEAG-IKFERIEGESLLSIDFDEDAGIL 264
G I Y + F+P PY+ + + A+NL+++G I++ R + +S +++++D++ +
Sbjct: 128 GIIFGYACDDTKNFLPAPYELANSILKKASNLRKSGAIEWLRPDSKSQVTMEYDKNRRPI 187
Query: 265 KIPTLTI 271
KI + +
Sbjct: 188 KIKNIVV 194
>sp|A2BUG6|MNME_PROM5 tRNA modification GTPase MnmE OS=Prochlorococcus marinus (strain
MIT 9515) GN=mnmE PE=3 SV=1
Length = 461
Score = 32.3 bits (72), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 16/95 (16%)
Query: 226 ENWNFIISATNLKEAGIKFERIEGESLLSIDFDEDAGILKIPTLTIDDDIESFFRNISVY 285
E+ N +I+A NLK A I F ++GE ID I +D+ +S
Sbjct: 139 ESINQLINAKNLKSAEIAFNGVKGEIKKKIDV-------------IKNDL---IEQLSEI 182
Query: 286 EQFFPFDEYAPLINYLKFMDSLINTAKDVELLFEN 320
E F+E NY F S+ N + +E+L EN
Sbjct: 183 EARVDFEEDFSDFNYHDFSRSIKNIKEKIEILIEN 217
>sp|Q5EA06|GBRP_BOVIN Gamma-aminobutyric acid receptor subunit pi OS=Bos taurus GN=GABRP
PE=2 SV=1
Length = 440
Score = 32.3 bits (72), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 114 KFELDIWEDDDNVFMTSWVRKKLGRDLL--LANNQLPLFVLQQFYDDTKMPEDQETNFQD 171
K +L+ W D N SW+R G D + L N +L + +QQ++ + + N+
Sbjct: 175 KLQLESWGYDGNDVEFSWLR---GNDSVRGLENLRLAQYTIQQYFTSVTRSQQETGNYTR 231
Query: 172 LILGF 176
L+L F
Sbjct: 232 LVLQF 236
>sp|Q9JME2|CHSTB_MOUSE Carbohydrate sulfotransferase 11 OS=Mus musculus GN=Chst11 PE=2
SV=1
Length = 352
Score = 31.6 bits (70), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 16/124 (12%)
Query: 198 DTKTKHLLGFICDYHWEWVPRFVPPPYDENWNFIISATNLKEAGI----KFERIEGESLL 253
D K + + ++ D H + P++E+W + S + K+E +E +S
Sbjct: 234 DVKFEEFVAYLIDPHTQR-----EEPFNEHWQTVYSLCHPCHIHYDLVGKYETLEEDSNY 288
Query: 254 SIDFDEDAGILKIPTL-----TIDDDIESFFRNISVYEQFFPFDEYAPLINYLKFMDSLI 308
+ +G LK PT T D+ FF+NIS Q ++ Y +++L F S+
Sbjct: 289 VLQLAGVSGYLKFPTYAKSTRTTDEMTTEFFQNISAEHQTQLYEVYK--LDFLMFNYSVP 346
Query: 309 NTAK 312
N K
Sbjct: 347 NYLK 350
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.142 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 152,214,142
Number of Sequences: 539616
Number of extensions: 6749919
Number of successful extensions: 18032
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 18017
Number of HSP's gapped (non-prelim): 20
length of query: 387
length of database: 191,569,459
effective HSP length: 119
effective length of query: 268
effective length of database: 127,355,155
effective search space: 34131181540
effective search space used: 34131181540
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 62 (28.5 bits)