Query 038043
Match_columns 387
No_of_seqs 129 out of 670
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 06:58:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038043.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038043hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03140 DUF247: Plant protein 100.0 4E-107 9E-112 818.1 31.6 364 7-387 1-380 (391)
2 PF14579 HHH_6: Helix-hairpin- 62.0 73 0.0016 25.1 8.4 84 241-330 1-86 (90)
3 PF09069 EF-hand_3: EF-hand; 60.4 24 0.00051 28.3 5.3 57 48-104 2-76 (90)
4 KOG3110 Riboflavin kinase [Coe 45.4 15 0.00032 31.7 1.9 60 22-87 65-138 (153)
5 PHA02103 hypothetical protein 37.0 76 0.0017 26.2 4.7 79 245-326 12-104 (135)
6 PF07014 Hs1pro-1_C: Hs1pro-1 30.6 40 0.00086 31.5 2.4 27 53-87 65-91 (261)
7 KOG4134 DNA-dependent RNA poly 26.7 65 0.0014 30.2 3.1 43 2-59 22-64 (253)
8 PHA01627 DNA binding protein 23.5 1.1E+02 0.0023 25.5 3.5 33 310-343 27-59 (107)
9 PF07131 DUF1382: Protein of u 20.3 71 0.0015 23.5 1.6 18 230-247 12-29 (61)
10 PF09644 Mg296: Mg296 protein; 16.7 6.2E+02 0.013 21.0 6.8 64 50-113 3-68 (121)
No 1
>PF03140 DUF247: Plant protein of unknown function; InterPro: IPR004158 The function of the plant proteins constituting this family is unknown.
Probab=100.00 E-value=4.1e-107 Score=818.12 Aligned_cols=364 Identities=41% Similarity=0.691 Sum_probs=326.0
Q ss_pred EeecCchhhhcCCCCCcceeeeecCCCCCCCCCChhHHHHHHHHHHHHHHHHHhcC---CChhhHHHHHHHHHHHHHHHH
Q 038043 7 IRKVPEHLRTENVKAYEPQIIAIGPLNHYLPREETHLAEMQKHKVLYLKKLLQRRG---EDLSSLGRYLVAMRELEEKAR 83 (387)
Q Consensus 7 I~rVP~~lr~~n~~~Y~P~~VsIGPyHhg~~~~~~~L~~mE~~K~~~~~~~l~r~~---~~~~~l~~~~~~i~~~e~~~R 83 (387)
|||||+++|++|+++|+|++||||||||| +++|+.||++|++|++.|++|++ .++++ ++++|.+++++||
T Consensus 1 I~rVP~~lr~~~~~~Y~P~~VsIGPyH~g----~~~L~~mE~~K~~~l~~~l~~~~~~~~~l~~---~~~~i~~~e~~~R 73 (391)
T PF03140_consen 1 IYRVPESLRDVNPKAYTPQVVSIGPYHHG----KPDLQEMEEHKLRYLHRFLKRSGAPAESLED---YVEAIRSLEEEAR 73 (391)
T ss_pred CcCCCHHHccCCchhcCCceEEeCCCCCC----chhhhhhHHHHHHHHHHHHHHhCCCcccHHH---HHHHHHHHHHHHH
Confidence 89999999999999999999999999999 99999999999999999999998 68888 9999999999999
Q ss_pred hcccCCcC-CCHHHHHHHHHHHHHHHHHHHHhhccccccCCCc-ccchhhhhhhhhhhhhhhcccccHHHHHHHHhccCC
Q 038043 84 CCYAEPIH-MLLLEFVEMLLLDACFIVELFRKFELDIWEDDDN-VFMTSWVRKKLGRDLLLANNQLPLFVLQQFYDDTKM 161 (387)
Q Consensus 84 ~cY~~~~~-~~~~ef~~MmllDgCFlLe~~~~~~~~~~~~~d~-~~~~~~~~~~i~~Dl~LLENQiPffVLe~L~~~~~~ 161 (387)
+||++++. +++++|++||++|||||||+|+.+.. ..+.+|| ++..+|.+..|.+||+|||||||||||++||++...
T Consensus 74 ~~Y~~~~~~~~~~~f~~MmllDgCFlLe~~~~~~~-~~~~~d~~~~~~~~~~~~i~~Dl~LLENQIPffVL~~L~~l~~~ 152 (391)
T PF03140_consen 74 ACYAEDIDDMSSDEFVEMMLLDGCFLLEFFLRYSR-SDGENDPGIFSRPWLLSAIRRDLLLLENQIPFFVLEKLFELLFG 152 (391)
T ss_pred HHhcccccccCHHHHHHHHHHHHHHHHHHHHhhhh-ccccccccccccccccccchhheeeecccchHHHHHHHHHHhcc
Confidence 99999987 99999999999999999999999874 2345688 888999999999999999999999999999999884
Q ss_pred C-CcccchHHHHHHHhccccccccccCCCCCCCCcCCCCcCCChHHHHHhhhcCCCC--CCCCCCC------CCCccccc
Q 038043 162 P-EDQETNFQDLILGFFSKVLTVQLLNVPRIGPFYEVDTKTKHLLGFICDYHWEWVP--RFVPPPY------DENWNFII 232 (387)
Q Consensus 162 ~-~~~~~~l~~l~~~ff~~~~~~~~~~~~~~~~~~~~~~~~~HlLdL~~~~~~~~~~--~~~~~~~------~~~~~~~~ 232 (387)
+ .....++.+++.+||....... . .. ......+++|||||+|.+++|+.+ .+.+... ..++..+|
T Consensus 153 ~~~~~~~~l~~l~~~~~~~~~~~~---~-~~--~~~~~~~~~HlL~L~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (391)
T PF03140_consen 153 SKSDVDESLIDLVLKFFYKHWPSW---P-PD--EPISNPEPHHLLDLLRMSLLPSPPSSSPTPPRPPRSNGEKPPPKRIR 226 (391)
T ss_pred cccCccchHHHHHHhHhccccccc---c-cc--ccccCCCCCChHHHHHHHhccccCCcccCCCCcccccccccccccCC
Confidence 3 4567889999999994322211 1 11 125667899999999999999432 1111110 12467999
Q ss_pred CHHHHHHcCcEEEecCCC-CceeeEEecCCceEEeceEEeccchhHHHHhHHHHHHhCCCCCCccceeHHHHHHhhcCCh
Q 038043 233 SATNLKEAGIKFERIEGE-SLLSIDFDEDAGILKIPTLTIDDDIESFFRNISVYEQFFPFDEYAPLINYLKFMDSLINTA 311 (387)
Q Consensus 233 sAteL~~aGVkfk~~~~~-~llDI~F~~~~G~L~iP~l~id~~T~~llrNLiA~Eq~~~~~~~~~vtsYv~fm~~LI~t~ 311 (387)
|||||++|||+|+++++. +++||+|+ +|+|+||+|.||++|+++||||||||||+. ..+.+||||+.||++||+|+
T Consensus 227 sA~eL~~aGV~fk~~~~~~~~lDv~F~--~G~L~IP~L~id~~T~~~lrNLiA~Eq~~~-~~~~~vtsY~~fm~~Li~t~ 303 (391)
T PF03140_consen 227 SATELREAGVKFKPSETDRSLLDVKFK--KGVLEIPPLYIDDNTESLLRNLIAFEQCHP-PTGSYVTSYVFFMDSLINTP 303 (391)
T ss_pred CHHHHHhCCcEEeeccCccccccceec--CCEEEeCeEEECCcchHHHhHHHHHHHHhc-cCCchHhHHHHHHHHHhCcH
Confidence 999999999999999876 59999998 999999999999999999999999999999 88999999999999999999
Q ss_pred hhHHHHHhCCccccCCCChHHHHHHHHHhcccCCCCCCc-hHHHHHHHHHHHccCcHHHHHHhhccccccccccccC
Q 038043 312 KDVELLFENKILHNCLGDDEVVANMFNRLGDSVALPLYN-FYGDIFHNVNEYCDRHWKRWIANLMHNYFNTPLAIIS 387 (387)
Q Consensus 312 eDV~lL~~~gIi~n~lg~deeva~lFn~L~~~~~~~~~~-~~~~v~~~l~~y~~~r~~~w~a~l~~~yf~nPW~~is 387 (387)
+||++|+++|||+|++|+||+|++|||+||++++.++++ ||.+++++||+||++||++|+|+++|+||+|||+++|
T Consensus 304 ~DV~lL~~kgIi~~~l~~d~eva~~F~~L~~~v~~~~~~~~~~~v~~~l~~~~~~~~~~~~a~l~~~yf~~pw~~is 380 (391)
T PF03140_consen 304 EDVELLRRKGIIVNWLGSDEEVAKLFNGLCKGVVFDVDDSYYSDVCEDLNKYYQSRWNRWWAWLRRKYFSNPWTFIS 380 (391)
T ss_pred hhHHHHHhCCeEecCCCCcHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHhcChHHHHHHHHhhhhcCCcHHHHH
Confidence 999999999999999999999999999999999987654 9999999999999999999999999999999999886
No 2
>PF14579 HHH_6: Helix-hairpin-helix motif; PDB: 2HPM_A 2HPI_A 3E0D_A 3F2C_A 3F2B_A 3F2D_A 2HQA_A 2HNH_A.
Probab=61.95 E-value=73 Score=25.07 Aligned_cols=84 Identities=14% Similarity=0.164 Sum_probs=57.1
Q ss_pred CcEEEecC-CCCceeeEEecCCceEEeceEEeccchhHHHHhHHHHHHhCCCCCCccceeHHHHHHhh-cCChhhHHHHH
Q 038043 241 GIKFERIE-GESLLSIDFDEDAGILKIPTLTIDDDIESFFRNISVYEQFFPFDEYAPLINYLKFMDSL-INTAKDVELLF 318 (387)
Q Consensus 241 GVkfk~~~-~~~llDI~F~~~~G~L~iP~l~id~~T~~llrNLiA~Eq~~~~~~~~~vtsYv~fm~~L-I~t~eDV~lL~ 318 (387)
||++.+.. ..+-.+-+...+++.+.+|=-.|..-.+.....+++-=+ . ..++|+.-|...+ --+..+++.|.
T Consensus 1 Gi~v~ppdIn~S~~~~~~~~~~~~Ir~gl~~Ikglg~~~a~~I~~~R~-~-----g~f~s~~df~~R~~~i~~~~le~Li 74 (90)
T PF14579_consen 1 GIKVLPPDINKSDADFTVEDKNNAIRLGLSAIKGLGEEVAEKIVEERE-N-----GPFKSLEDFIQRLPKINKRQLEALI 74 (90)
T ss_dssp T-EEE---TTT-BSS-EEETT-TEEE-BGGGSTTS-HHHHHHHHHHHH-C-----SS-SSHHHHHHHS-TS-HHHHHHHH
T ss_pred CCEEeCCeecccCCCeEEECCCCEEeehHhhcCCCCHHHHHHHHHhHh-c-----CCCCCHHHHHHHHhcCCHHHHHHHH
Confidence 77777643 233345555633489999999999999998888887655 2 3488999999999 88899999999
Q ss_pred hCCccccCCCCh
Q 038043 319 ENKILHNCLGDD 330 (387)
Q Consensus 319 ~~gIi~n~lg~d 330 (387)
+.|.+...-+++
T Consensus 75 ~aGafd~~~~~~ 86 (90)
T PF14579_consen 75 KAGAFDSFGKSR 86 (90)
T ss_dssp HTTTTTTCSSCH
T ss_pred HCCCccccChhh
Confidence 999998865544
No 3
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=60.41 E-value=24 Score=28.33 Aligned_cols=57 Identities=23% Similarity=0.401 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhcCC--ChhhHHHHHHHHH-------------HHHHHHHhcccC---CcCCCHHHHHHHHHHH
Q 038043 48 KHKVLYLKKLLQRRGE--DLSSLGRYLVAMR-------------ELEEKARCCYAE---PIHMLLLEFVEMLLLD 104 (387)
Q Consensus 48 ~~K~~~~~~~l~r~~~--~~~~l~~~~~~i~-------------~~e~~~R~cY~~---~~~~~~~ef~~MmllD 104 (387)
..|.||+-+++..++. +-..|+.++..+. ..|..+|+|+.. .-+++.++|++.|..|
T Consensus 2 ~dKyRylFslisd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~~~~~I~~~~Fl~wl~~e 76 (90)
T PF09069_consen 2 EDKYRYLFSLISDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQLSPKITENQFLDWLMSE 76 (90)
T ss_dssp HHHHHHHHHHHS-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTTT-S-B-HHHHHHHHHT-
T ss_pred hHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccCCCCccCHHHHHHHHHhC
Confidence 3689999999977442 3233333443333 367788999976 4578999998888765
No 4
>KOG3110 consensus Riboflavin kinase [Coenzyme transport and metabolism]
Probab=45.38 E-value=15 Score=31.70 Aligned_cols=60 Identities=18% Similarity=0.173 Sum_probs=38.0
Q ss_pred Ccceeeeec--CCCCCCCCCChhHHHHHHHHHHH-----HHHHHHh-------cCCChhhHHHHHHHHHHHHHHHHhccc
Q 038043 22 YEPQIIAIG--PLNHYLPREETHLAEMQKHKVLY-----LKKLLQR-------RGEDLSSLGRYLVAMRELEEKARCCYA 87 (387)
Q Consensus 22 Y~P~~VsIG--PyHhg~~~~~~~L~~mE~~K~~~-----~~~~l~r-------~~~~~~~l~~~~~~i~~~e~~~R~cY~ 87 (387)
--|+++||| ||+.. ..+.||-|=... ..+-++- ...+.++|++++++|..-.+.|+..-+
T Consensus 65 v~kMvmSIGwNP~Y~N------~~Kt~E~hlih~f~~DFYge~l~~~IvGyiRpe~nf~slesLi~~I~~Di~vA~~~l~ 138 (153)
T KOG3110|consen 65 VFKMVMSIGWNPYYKN------KKKTMELHLIHDFGEDFYGETLKVIIVGYIRPELNFDSLESLIEAIHGDIEVAKKVLD 138 (153)
T ss_pred ceeEEEEcccCcccCC------cccceeeeeehhcccchhhheeeEEEEEeeccccCcchHHHHHHHHHhhHHHHHHhhc
Confidence 358899999 88887 335566553322 2222221 123566666699999998888887654
No 5
>PHA02103 hypothetical protein
Probab=37.02 E-value=76 Score=26.22 Aligned_cols=79 Identities=16% Similarity=0.277 Sum_probs=51.0
Q ss_pred EecCCCCcee--eEEecC--Cc--eEEeceEEeccchhHHHHhHHHHHHhCCC-C----CC---ccceeHHHHHHhhcCC
Q 038043 245 ERIEGESLLS--IDFDED--AG--ILKIPTLTIDDDIESFFRNISVYEQFFPF-D----EY---APLINYLKFMDSLINT 310 (387)
Q Consensus 245 k~~~~~~llD--I~F~~~--~G--~L~iP~l~id~~T~~llrNLiA~Eq~~~~-~----~~---~~vtsYv~fm~~LI~t 310 (387)
|++..++.+- |.|+-+ +. .-+||.+..|+...-+.|=.+-+|.|... + +. .++-+|-... -..
T Consensus 12 k~kd~rn~f~v~~~fsdkf~d~t~~~e~pai~~~~~~~ei~rl~~f~~kck~~yp~gkgg~~df~~ipdyyryf---~ee 88 (135)
T PHA02103 12 KPKDDRNTFMVKMHFSDKFSDATLEYEIPAIDADRTKAEIVRLITFMDKCKAEYPRGKGGQADFNHIPDYYRYF---GEE 88 (135)
T ss_pred CCccCcceEEEEEecccccCcceeEEeccccccchhhHHHHHHHHHHHHHHhhCCCCCCCccccccChHHHHHh---ccc
Confidence 3344455444 445422 33 46899999999999999999999999851 1 11 2455555443 356
Q ss_pred hhhHHHHHhCCccccC
Q 038043 311 AKDVELLFENKILHNC 326 (387)
Q Consensus 311 ~eDV~lL~~~gIi~n~ 326 (387)
+|-|++-.+-||=.-|
T Consensus 89 ~e~ie~we~ygve~l~ 104 (135)
T PHA02103 89 AEGVELWEEYGVEGLC 104 (135)
T ss_pred chhhhHHHHhCcceee
Confidence 7777888777775433
No 6
>PF07014 Hs1pro-1_C: Hs1pro-1 protein C-terminus; InterPro: IPR009743 This entry represents the C terminus (approximately 270 residues) of a number of plant Hs1pro-1 proteins, which are believed to confer nematode resistance [].
Probab=30.65 E-value=40 Score=31.53 Aligned_cols=27 Identities=33% Similarity=0.615 Sum_probs=17.0
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccc
Q 038043 53 YLKKLLQRRGEDLSSLGRYLVAMRELEEKARCCYA 87 (387)
Q Consensus 53 ~~~~~l~r~~~~~~~l~~~~~~i~~~e~~~R~cY~ 87 (387)
..+.+|+|....++. .+.|..|+.||.
T Consensus 65 ~a~~LL~ri~~~i~~--------~~~ekAa~dc~~ 91 (261)
T PF07014_consen 65 VARKLLERIEERIEA--------RDFEKAASDCWI 91 (261)
T ss_pred HHHHHHHHHHHHHHc--------ccHHHHHhHHHH
Confidence 344555654444444 568888999995
No 7
>KOG4134 consensus DNA-dependent RNA polymerase I [Transcription]
Probab=26.71 E-value=65 Score=30.24 Aligned_cols=43 Identities=14% Similarity=0.021 Sum_probs=28.9
Q ss_pred CCCceEeecCchhhhcCCCCCcceeeeecCCCCCCCCCChhHHHHHHHHHHHHHHHHH
Q 038043 2 SAGFKIRKVPEHLRTENVKAYEPQIIAIGPLNHYLPREETHLAEMQKHKVLYLKKLLQ 59 (387)
Q Consensus 2 ~~~~~I~rVP~~lr~~n~~~Y~P~~VsIGPyHhg~~~~~~~L~~mE~~K~~~~~~~l~ 59 (387)
+++.||+++|-.+ .+|+||||-. ++.-..||+|=..-+.....
T Consensus 22 sp~sclv~~t~dl-----------hlalaP~yl~----npl~~~i~ehld~~vl~y~~ 64 (253)
T KOG4134|consen 22 SPESCLVCITTDL-----------HLALAPYYLA----NPLHALIEEHLDTKVLFYDS 64 (253)
T ss_pred CCcceEEEeeehe-----------eeeecchhhc----chhHHHHHHHhhHHHhhhcc
Confidence 5667888888653 6899999998 55444788775544443333
No 8
>PHA01627 DNA binding protein
Probab=23.49 E-value=1.1e+02 Score=25.48 Aligned_cols=33 Identities=24% Similarity=0.433 Sum_probs=26.9
Q ss_pred ChhhHHHHHhCCccccCCCChHHHHHHHHHhccc
Q 038043 310 TAKDVELLFENKILHNCLGDDEVVANMFNRLGDS 343 (387)
Q Consensus 310 t~eDV~lL~~~gIi~n~lg~deeva~lFn~L~~~ 343 (387)
|.++++.+..++-+++..|.+ ++|++.++||.-
T Consensus 27 ~~~Eak~~v~~~~~vSaIGH~-sTA~lls~llg~ 59 (107)
T PHA01627 27 DIEEAKELLENEEFVSAIGHD-ATANLLSNLCGV 59 (107)
T ss_pred CHHHHHHHhcccCeEEeeccH-HHHHHHHHHhCc
Confidence 467888888777788888865 899999999963
No 9
>PF07131 DUF1382: Protein of unknown function (DUF1382); InterPro: IPR009814 This entry is represented by Bacteriophage lambda, Xis. This entry overlaps with IPR009750, both representing lambda Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Escherichia coli and Bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown.
Probab=20.29 E-value=71 Score=23.52 Aligned_cols=18 Identities=33% Similarity=0.447 Sum_probs=14.5
Q ss_pred cccCHHHHHHcCcEEEec
Q 038043 230 FIISATNLKEAGIKFERI 247 (387)
Q Consensus 230 ~~~sAteL~~aGVkfk~~ 247 (387)
.+--|-.|..+||+|.+-
T Consensus 12 ~lE~A~~La~~GIRFVpi 29 (61)
T PF07131_consen 12 ALEMAHSLAHIGIRFVPI 29 (61)
T ss_pred HHHHHHHHHHcCceeecc
Confidence 345678899999999984
No 10
>PF09644 Mg296: Mg296 protein; InterPro: IPR019097 This protein of 129 residues is expressed in bacteria. It consists of three identical chains of five alpha helices. Two copies of each chain associate into a complex of six units of possible biological significance but of unknown function. ; PDB: 2I15_A.
Probab=16.75 E-value=6.2e+02 Score=21.02 Aligned_cols=64 Identities=20% Similarity=0.132 Sum_probs=40.2
Q ss_pred HHHHHHHHHHh--cCCChhhHHHHHHHHHHHHHHHHhcccCCcCCCHHHHHHHHHHHHHHHHHHHH
Q 038043 50 KVLYLKKLLQR--RGEDLSSLGRYLVAMRELEEKARCCYAEPIHMLLLEFVEMLLLDACFIVELFR 113 (387)
Q Consensus 50 K~~~~~~~l~r--~~~~~~~l~~~~~~i~~~e~~~R~cY~~~~~~~~~ef~~MmllDgCFlLe~~~ 113 (387)
|+-++..|++- ...++|.++.=+..+.+.+..-|--|.++.--+..-|.+=|+=||-||=-=++
T Consensus 3 qL~a~~~~lqt~f~~vdfEtf~~NfNl~lereq~t~iiYeDDDYdd~~FF~Kpm~sd~~fi~~evi 68 (121)
T PF09644_consen 3 QLNAYKTFLQTEFSEVDFETFRNNFNLCLEREQHTRIIYEDDDYDDQDFFEKPMLSDLFFIKNEVI 68 (121)
T ss_dssp HHHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHT-SSGGGSS---S-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHhccccceEeecCCCcchhhHHHhhhhhhHHHHHHHHH
Confidence 55566666664 34567774444556667777778888877656667788999999999865443
Done!