Query 038043
Match_columns 387
No_of_seqs 129 out of 670
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 11:35:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038043.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038043hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2x4i_A CAG38848, uncharacteriz 19.4 1.2E+02 0.004 24.3 4.2 33 310-343 28-60 (114)
2 2l27_B Peptide agonist; CRF, E 17.7 32 0.0011 21.9 0.3 21 267-288 1-21 (38)
3 2kru_A Light-independent proto 17.1 40 0.0014 24.2 0.8 12 145-156 15-26 (63)
4 2j6b_A AFV3-109; sulfolobus, c 16.4 1.1E+02 0.0036 24.4 3.2 33 310-343 26-58 (109)
5 3ism_C CG4930; endonuclease, e 15.6 78 0.0027 29.9 2.6 69 310-378 218-303 (359)
6 2rmf_A Urocortin, HUCN1; CRF l 13.1 40 0.0014 21.7 -0.1 20 267-287 3-22 (40)
7 2j85_A STIV B116; viral protei 12.9 2.5E+02 0.0084 22.7 4.5 32 311-343 29-64 (122)
8 1eg3_A Dystrophin; EF-hand lik 11.5 4.7E+02 0.016 23.7 6.7 26 50-75 169-196 (261)
9 1kdl_A YOPD protein; yersinia, 11.3 71 0.0024 18.5 0.6 24 350-373 2-25 (26)
10 2l09_A ASR4154 protein; proto- 10.7 41 0.0014 24.0 -0.7 11 145-155 14-24 (62)
No 1
>2x4i_A CAG38848, uncharacterized protein 114; unknown function, DUF1874, archeal virus; 2.20A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=19.42 E-value=1.2e+02 Score=24.32 Aligned_cols=33 Identities=18% Similarity=0.255 Sum_probs=26.8
Q ss_pred ChhhHHHHHhCCccccCCCChHHHHHHHHHhccc
Q 038043 310 TAKDVELLFENKILHNCLGDDEVVANMFNRLGDS 343 (387)
Q Consensus 310 t~eDV~lL~~~gIi~n~lg~deeva~lFn~L~~~ 343 (387)
|.++++.+..++-+.+..|.+ ++|++.+.||.-
T Consensus 28 s~~EAk~~v~~~~~iSaIGH~-sTA~lls~Llg~ 60 (114)
T 2x4i_A 28 DRLEFCENIDNEDIINSIGHD-STIQLINSLCGT 60 (114)
T ss_dssp CHHHHHHHHCCTTEEECCCCH-HHHHHHHHHHCC
T ss_pred CHHHHHHHhcccCeEEeeccH-HHHHHHHHHhCC
Confidence 467788888777788888875 899999999963
No 2
>2l27_B Peptide agonist; CRF, ECD1, family B1, alpha helical CRF, membrane P peptide binding protein; NMR {Homo sapiens}
Probab=17.69 E-value=32 Score=21.94 Aligned_cols=21 Identities=14% Similarity=0.305 Sum_probs=15.8
Q ss_pred ceEEeccchhHHHHhHHHHHHh
Q 038043 267 PTLTIDDDIESFFRNISVYEQF 288 (387)
Q Consensus 267 P~l~id~~T~~llrNLiA~Eq~ 288 (387)
||+.||- |--+||||+-....
T Consensus 1 PPiSlDL-TFhlLR~m~emar~ 21 (38)
T 2l27_B 1 PPISLDL-TFNLLREVLEIAKA 21 (38)
T ss_dssp CCCCSHH-HHHHHHHHHHHHHH
T ss_pred CCcchhH-HHHHHHHHHHHHHH
Confidence 6777764 88999999876543
No 3
>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum}
Probab=17.08 E-value=40 Score=24.17 Aligned_cols=12 Identities=25% Similarity=0.633 Sum_probs=8.7
Q ss_pred ccccHHHHHHHH
Q 038043 145 NQLPLFVLQQFY 156 (387)
Q Consensus 145 NQiPffVLe~L~ 156 (387)
++|||||=.++=
T Consensus 15 kkIP~FVR~kvr 26 (63)
T 2kru_A 15 GKVPFFVRKKVR 26 (63)
T ss_dssp TTSCHHHHHHHH
T ss_pred HhCCHHHHHHHH
Confidence 569999875543
No 4
>2j6b_A AFV3-109; sulfolobus, crenarchaea, viral protein; 1.3A {Acidianus filamentous virus 1} SCOP: d.321.1.1 PDB: 2j6c_A
Probab=16.37 E-value=1.1e+02 Score=24.40 Aligned_cols=33 Identities=12% Similarity=0.291 Sum_probs=26.6
Q ss_pred ChhhHHHHHhCCccccCCCChHHHHHHHHHhccc
Q 038043 310 TAKDVELLFENKILHNCLGDDEVVANMFNRLGDS 343 (387)
Q Consensus 310 t~eDV~lL~~~gIi~n~lg~deeva~lFn~L~~~ 343 (387)
|.++++.+..++-+.+..|.+ ++|++.++||.-
T Consensus 26 s~~Ea~~~l~~~~~vSaIGH~-sTA~lls~Llg~ 58 (109)
T 2j6b_A 26 TIQEAKELVTKEQFTSAIGHQ-ATAELLSSILGV 58 (109)
T ss_dssp CHHHHHHHHHHSCEEECBCSH-HHHHHHHHHHTS
T ss_pred CHHHHHHHhcccceEEeeccH-HHHHHHHHHhCC
Confidence 677888887777777888865 899999999963
No 5
>3ism_C CG4930; endonuclease, endonuclease inhibitor complex, metal complex, hydrolase, hydrolase inhibitor-hydrolase complex; 2.20A {Drosophila melanogaster}
Probab=15.65 E-value=78 Score=29.90 Aligned_cols=69 Identities=14% Similarity=0.206 Sum_probs=45.2
Q ss_pred ChhhHHHHHhCCccccCCCChHHHHHHHHHhcccC-------CCCCCc---hHHHHHHHHHHHccC-------cHHHHHH
Q 038043 310 TAKDVELLFENKILHNCLGDDEVVANMFNRLGDSV-------ALPLYN---FYGDIFHNVNEYCDR-------HWKRWIA 372 (387)
Q Consensus 310 t~eDV~lL~~~gIi~n~lg~deeva~lFn~L~~~~-------~~~~~~---~~~~v~~~l~~y~~~-------r~~~w~a 372 (387)
-.+|-+.|-++||+.+-.-.|+---.-|+++|+.. .++..+ -|.++.+-|..|..- +.|-|+.
T Consensus 218 PleDy~~Lmkr~v~t~~iv~d~i~~~~~~ki~~~ar~vIw~LLF~~~~~~e~~eKaa~lLqeyk~da~fygP~~YNeWIv 297 (359)
T 3ism_C 218 PLEEYRTLMKRFVLTKIIVPDSVHQASVKKIAAAAREIIWKLLFDGTPSAEDQNKAAELLQEYKGDAGFYGPDDYNSWIF 297 (359)
T ss_dssp -CHHHHHHHHHHC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHHHHCTHHHHHHHH
T ss_pred cHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhhccccCCchHhHHHH
Confidence 35677777788888887777865566788887652 122222 599999999998543 3589998
Q ss_pred hhcccc
Q 038043 373 NLMHNY 378 (387)
Q Consensus 373 ~l~~~y 378 (387)
.||..-
T Consensus 298 klrdel 303 (359)
T 3ism_C 298 NLRDEV 303 (359)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887543
No 6
>2rmf_A Urocortin, HUCN1; CRF ligand, sauvagine, astressin2B, urocortins, urotensins, CRF receptors, amidation, cleavage on PAIR of basic residues, hormone; NMR {Synthetic} SCOP: j.16.1.1
Probab=13.05 E-value=40 Score=21.70 Aligned_cols=20 Identities=25% Similarity=0.403 Sum_probs=15.0
Q ss_pred ceEEeccchhHHHHhHHHHHH
Q 038043 267 PTLTIDDDIESFFRNISVYEQ 287 (387)
Q Consensus 267 P~l~id~~T~~llrNLiA~Eq 287 (387)
||+.|| .|--+||||+-...
T Consensus 3 PpiSiD-LTFHlLR~miemar 22 (40)
T 2rmf_A 3 PSLSID-LTFHLLRTLLELAR 22 (40)
T ss_dssp CCHHHH-HHHHHHHHHHHHHH
T ss_pred CCcchh-hHHHHHHHHHHHHH
Confidence 666665 47899999987653
No 7
>2j85_A STIV B116; viral protein, archaeal virus, crenarchaeal virus, STI archaea, crenarchaea, sulfolobus turreted icosa virus; 2.39A {Sulfolobus turreted icosahedral virus} SCOP: d.321.1.1
Probab=12.88 E-value=2.5e+02 Score=22.71 Aligned_cols=32 Identities=31% Similarity=0.456 Sum_probs=23.1
Q ss_pred hhhHHHHH----hCCccccCCCChHHHHHHHHHhccc
Q 038043 311 AKDVELLF----ENKILHNCLGDDEVVANMFNRLGDS 343 (387)
Q Consensus 311 ~eDV~lL~----~~gIi~n~lg~deeva~lFn~L~~~ 343 (387)
.++++.+. .++-+.+..|.+ ++|++.++||.-
T Consensus 29 ~~Eake~l~~~~~~~~~vsaIGH~-sTAqlls~Llg~ 64 (122)
T 2j85_A 29 EEDFCLKLELRLEDGTLINAIGHD-STINLVNTLCGT 64 (122)
T ss_dssp HHHHHHHHHHHHHTTCEEECCCCH-HHHHHHHHHHCC
T ss_pred HHHHHHHHhhhcccCceEEeeccH-HHHHHHHHHhCC
Confidence 44555554 577778888865 889999999753
No 8
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A
Probab=11.47 E-value=4.7e+02 Score=23.69 Aligned_cols=26 Identities=35% Similarity=0.326 Sum_probs=12.3
Q ss_pred HHHHHHHHHHh-cCC-ChhhHHHHHHHH
Q 038043 50 KVLYLKKLLQR-RGE-DLSSLGRYLVAM 75 (387)
Q Consensus 50 K~~~~~~~l~r-~~~-~~~~l~~~~~~i 75 (387)
|++|+=.+... .|. +-++|..++.+|
T Consensus 169 KL~w~F~lyDD~~G~I~~~El~~il~~i 196 (261)
T 1eg3_A 169 KYRYLFKQVASSTGFCDQRRLGLLLHDS 196 (261)
T ss_dssp HHHHHHHHHSCTTSCBCHHHHHHHHHHH
T ss_pred HHHHHHheeeCCCCCCcHHHHHHHHHHH
Confidence 66666666652 121 334444455444
No 9
>1kdl_A YOPD protein; yersinia, amphipathic alpha helix, beta turn, structural protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=11.27 E-value=71 Score=18.51 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=17.9
Q ss_pred chHHHHHHHHHHHccCcHHHHHHh
Q 038043 350 NFYGDIFHNVNEYCDRHWKRWIAN 373 (387)
Q Consensus 350 ~~~~~v~~~l~~y~~~r~~~w~a~ 373 (387)
+...++.+=++.|+++.-..|+|.
T Consensus 2 nfMkDvlql~qQy~qsh~qa~rAA 25 (26)
T 1kdl_A 2 NFMKDVLRLIEQYVSSHTHAMKXX 25 (26)
T ss_dssp THHHHHHHHHHHHTTTTCCCCC--
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcc
Confidence 356788889999999987777764
No 10
>2l09_A ASR4154 protein; proto-chlorophyllide reductase 57 KD subunit superfamily, ST genomics, PSI-2, protein structure initiative; NMR {Nostoc SP}
Probab=10.71 E-value=41 Score=24.02 Aligned_cols=11 Identities=27% Similarity=0.588 Sum_probs=8.0
Q ss_pred ccccHHHHHHH
Q 038043 145 NQLPLFVLQQF 155 (387)
Q Consensus 145 NQiPffVLe~L 155 (387)
++|||||=.++
T Consensus 14 kkIP~FVR~kv 24 (62)
T 2l09_A 14 KNIPFFARSQA 24 (62)
T ss_dssp HTSCGGGHHHH
T ss_pred HhCCHHHHHHH
Confidence 56999986554
Done!