Query 038043
Match_columns 387
No_of_seqs 129 out of 670
Neff 7.2
Searched_HMMs 13730
Date Mon Mar 25 11:36:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038043.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/038043hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1eg3a2 a.39.1.7 (A:210-306) D 35.4 43 0.0031 24.2 6.1 55 48-102 3-77 (97)
2 d2i4ra1 c.149.1.1 (A:4-79) V-t 19.4 26 0.0019 24.1 2.1 22 9-30 55-76 (76)
3 d2outa1 a.140.3.2 (A:94-131) U 12.3 27 0.002 20.0 0.5 16 235-250 6-21 (38)
4 d1awca_ a.4.5.21 (A:) GA bindi 11.4 60 0.0044 24.0 2.4 56 327-386 31-88 (110)
5 d1duxc_ a.4.5.21 (C:) Elk-1 {H 9.8 2E+02 0.014 19.9 4.7 36 327-366 32-67 (86)
6 d2j6ba1 d.321.1.1 (A:1-109) Af 9.6 1.1E+02 0.0079 22.4 3.2 35 310-347 26-61 (109)
7 d2i15a1 a.291.1.1 (A:1-129) Hy 8.9 3.1E+02 0.022 19.1 7.2 61 51-114 5-70 (129)
8 d1puee_ a.4.5.21 (E:) Transcri 8.8 1.5E+02 0.011 20.6 3.7 43 320-366 28-71 (88)
9 d2hpqp_ g.14.1.1 (P:) Meizothr 8.7 41 0.003 23.0 0.4 11 372-382 43-53 (79)
10 d1nl1a1 g.14.1.1 (A:66-147) Pr 8.7 35 0.0025 23.6 0.0 11 372-382 43-53 (82)
No 1
>d1eg3a2 a.39.1.7 (A:210-306) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.43 E-value=43 Score=24.22 Aligned_cols=55 Identities=22% Similarity=0.291 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhcCC--ChhhHHHHHHHHHH---------------HHHHHHhcccC---CcCCCHHHHHHHHH
Q 038043 48 KHKVLYLKKLLQRRGE--DLSSLGRYLVAMRE---------------LEEKARCCYAE---PIHMLLLEFVEMLL 102 (387)
Q Consensus 48 ~~K~~~~~~~l~r~~~--~~~~l~~~~~~i~~---------------~e~~~R~cY~~---~~~~~~~ef~~Mml 102 (387)
+.|.||+=+.+..++. +...|+.++..+.. +|..+|+|+.. .-+++.++|++-|.
T Consensus 3 ~dKyRYlF~qisd~~g~~~~~kl~~lL~d~lqlP~~vgE~~sFG~s~ie~sv~sCF~~~~~~~~i~~~~FL~wl~ 77 (97)
T d1eg3a2 3 EDKYRYLFKQVASSTGFCDQRRLGLLLHDSIQIPRQLGEVASFGGSNIEPSVRSCFQFANNKPEIEAALFLDWMR 77 (97)
T ss_dssp HHHHHHHHHHHSCTTSCBCHHHHHHHHHHHHHHHHHTTCGGGGTCSCCHHHHHHHHHHTTTCSCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHhCcccccCCCcchHHHHHHHhccCCCCcccHHHHHHHHH
Confidence 4699999999986542 44444445544432 25566666632 22455565554443
No 2
>d2i4ra1 c.149.1.1 (A:4-79) V-type ATP synthase subunit F, AtpF {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=19.36 E-value=26 Score=24.07 Aligned_cols=22 Identities=36% Similarity=0.641 Sum_probs=19.2
Q ss_pred ecCchhhhcCCCCCcceeeeec
Q 038043 9 KVPEHLRTENVKAYEPQIIAIG 30 (387)
Q Consensus 9 rVP~~lr~~n~~~Y~P~~VsIG 30 (387)
++|+.+++.-.+.-.|.++.||
T Consensus 55 ~i~~~i~~~~~~~~~P~Vi~Ig 76 (76)
T d2i4ra1 55 KLPPVLRREIDEKVEPTFVSVG 76 (76)
T ss_dssp TSCHHHHTTTTTCCSSEEEEEC
T ss_pred HhhHHHHHHHhcCCCCEEEecC
Confidence 5788888887888899999998
No 3
>d2outa1 a.140.3.2 (A:94-131) Uncharacterized protein HI1507 in Mu-like prophage FluMu region {Haemophilus influenzae [TaxId: 727]}
Probab=12.27 E-value=27 Score=20.02 Aligned_cols=16 Identities=31% Similarity=0.565 Sum_probs=12.6
Q ss_pred HHHHHcCcEEEecCCC
Q 038043 235 TNLKEAGIKFERIEGE 250 (387)
Q Consensus 235 teL~~aGVkfk~~~~~ 250 (387)
.+|-+.||.||.+.+.
T Consensus 6 aqltergitfkqsatk 21 (38)
T d2outa1 6 AQLTERGITFKQSATK 21 (38)
T ss_dssp HHHHHHTCCCSSSCCS
T ss_pred HHHHHcCceeeccchh
Confidence 4788999999987543
No 4
>d1awca_ a.4.5.21 (A:) GA binding protein (GABP) alpha {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.41 E-value=60 Score=23.95 Aligned_cols=56 Identities=14% Similarity=0.178 Sum_probs=37.3
Q ss_pred CCChHHHHHHHHHhcccCCCCCCchHHHHHHHHHHHccCcHHHH-H-Hhhcccccccccccc
Q 038043 327 LGDDEVVANMFNRLGDSVALPLYNFYGDIFHNVNEYCDRHWKRW-I-ANLMHNYFNTPLAII 386 (387)
Q Consensus 327 lg~deeva~lFn~L~~~~~~~~~~~~~~v~~~l~~y~~~r~~~w-~-a~l~~~yf~nPW~~i 386 (387)
+-+.++||+++-.--..-. =-|..+...+.-||++.--.- . ..+...+..+||.++
T Consensus 31 l~d~e~VA~lWG~~Knk~~----M~YeklSRaLRyYY~~~il~Kv~g~rl~Y~F~~d~~~~~ 88 (110)
T d1awca_ 31 LNQPELVAQKWGQRKNKPT----MNYEKLSRALRYYYDGDMICKVQGKRFVYKFVCDLKTLI 88 (110)
T ss_dssp CSSHHHHHHHHHHHHTCTT----CCHHHHHHHHHGGGGSSSEEECTTSTTEEEECSCHHHHT
T ss_pred eCCHHHHHHHHHHhhCCCc----ccHHHHHHHHHHHHhcccEEecCCcEEEEeccCCHHHHh
Confidence 4467899999964432211 269999999999999853111 1 345666777887764
No 5
>d1duxc_ a.4.5.21 (C:) Elk-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.81 E-value=2e+02 Score=19.93 Aligned_cols=36 Identities=22% Similarity=0.325 Sum_probs=26.5
Q ss_pred CCChHHHHHHHHHhcccCCCCCCchHHHHHHHHHHHccCc
Q 038043 327 LGDDEVVANMFNRLGDSVALPLYNFYGDIFHNVNEYCDRH 366 (387)
Q Consensus 327 lg~deeva~lFn~L~~~~~~~~~~~~~~v~~~l~~y~~~r 366 (387)
+-+.++||+++-.--..-. =-|..+.+.+.-||++.
T Consensus 32 lv~~~~VA~lWG~~Knk~~----MnYeklSRaLRyyY~~~ 67 (86)
T d1duxc_ 32 LVDAEEVARLWGLRKNKTN----MNYDKLSRALRYYYDKN 67 (86)
T ss_dssp CTTHHHHHHHHHHTTTCSC----CCHHHHHHHHHHHHTTT
T ss_pred ecCHHHHHHHHHhccCCCC----CCHHHHHHHHHHHHhcc
Confidence 4467899999964432211 17999999999999874
No 6
>d2j6ba1 d.321.1.1 (A:1-109) Afv3-109 {Acidianus filamentous virus 1 [TaxId: 235266]}
Probab=9.56 E-value=1.1e+02 Score=22.40 Aligned_cols=35 Identities=17% Similarity=0.418 Sum_probs=23.3
Q ss_pred ChhhHHHH-HhCCccccCCCChHHHHHHHHHhcccCCCC
Q 038043 310 TAKDVELL-FENKILHNCLGDDEVVANMFNRLGDSVALP 347 (387)
Q Consensus 310 t~eDV~lL-~~~gIi~n~lg~deeva~lFn~L~~~~~~~ 347 (387)
|.+.++.| ...+ +.+..|.+ ++|++.+.|| ++.++
T Consensus 26 sv~EAkell~~e~-~iSaIGH~-aTAqlls~Ll-gv~i~ 61 (109)
T d2j6ba1 26 TIQEAKELVTKEQ-FTSAIGHQ-ATAELLSSIL-GVNVP 61 (109)
T ss_dssp CHHHHHHHHHHSC-EEECBCSH-HHHHHHHHHH-TSCCC
T ss_pred CHHHHHHHhcccc-eeeecccH-HHHHHHHHHh-Ccccc
Confidence 44555555 5555 55568865 8999999999 45443
No 7
>d2i15a1 a.291.1.1 (A:1-129) Hypothetical protein MPN423 {Mycoplasma pneumoniae [TaxId: 2104]}
Probab=8.85 E-value=3.1e+02 Score=19.12 Aligned_cols=61 Identities=23% Similarity=0.257 Sum_probs=37.5
Q ss_pred HHHHHHHHHh--cCCChhhHHHHHHHHHHHHHHHHh---cccCCcCCCHHHHHHHHHHHHHHHHHHHHh
Q 038043 51 VLYLKKLLQR--RGEDLSSLGRYLVAMRELEEKARC---CYAEPIHMLLLEFVEMLLLDACFIVELFRK 114 (387)
Q Consensus 51 ~~~~~~~l~r--~~~~~~~l~~~~~~i~~~e~~~R~---cY~~~~~~~~~ef~~MmllDgCFlLe~~~~ 114 (387)
+-++++|.+- ...+++. +.+...+..++-.+ -|.++.--+..-|.+-|+-|+.||-.-..+
T Consensus 5 llalkqfvqtefekvdfet---frqnfnrclereqstlliyedddyddqsfflkpmlsdaffissevvk 70 (129)
T d2i15a1 5 LLALKQFVQTEFEKVDFET---FRQNFNRCLEREQSTLLIYEDDDYDDQSFFLKPMLSDAFFISSEVVK 70 (129)
T ss_dssp HHHHHHHHHHHHHTSCHHH---HHHHHHHHHHHHTSCSCTTTSSCCCSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhccHHH---HHHHHHHHHHhhhceEEEeccCCccchhHHhhHhhhhhHhhhHHHHH
Confidence 3455666654 2346777 66666655544433 344443445567899999999998765443
No 8
>d1puee_ a.4.5.21 (E:) Transcription factor PU.1, residues 171-259 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.83 E-value=1.5e+02 Score=20.64 Aligned_cols=43 Identities=9% Similarity=0.145 Sum_probs=29.8
Q ss_pred CCccccCCCChHHHHHHHHHhccc-CCCCCCchHHHHHHHHHHHccCc
Q 038043 320 NKILHNCLGDDEVVANMFNRLGDS-VALPLYNFYGDIFHNVNEYCDRH 366 (387)
Q Consensus 320 ~gIi~n~lg~deeva~lFn~L~~~-~~~~~~~~~~~v~~~l~~y~~~r 366 (387)
+||..=-..+.|+||+++-.--++ -.+ -|..+.+.|.-||++.
T Consensus 28 ~g~F~fv~~~~e~VA~lWG~~K~Nr~~M----nYeklSRaLRyYY~~~ 71 (88)
T d1puee_ 28 KGTFQFSSKHKEALAHRWGIQKGNRKKM----TYEKMARALRNYGKTG 71 (88)
T ss_dssp TTEEEECTTTHHHHHHHHHHHHTCSSCC----CHHHHHHHHHHHHHHS
T ss_pred CceEEEEeCCHHHHHHHHHhhcCCCCCC----cHHHHHHHHHHHHhcc
Confidence 455543344567899999755433 222 6999999999999864
No 9
>d2hpqp_ g.14.1.1 (P:) Meizothrombin {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.72 E-value=41 Score=23.02 Aligned_cols=11 Identities=27% Similarity=0.706 Sum_probs=8.3
Q ss_pred Hhhcccccccc
Q 038043 372 ANLMHNYFNTP 382 (387)
Q Consensus 372 a~l~~~yf~nP 382 (387)
+.|.|+||+||
T Consensus 43 ~~l~~NyCRNP 53 (79)
T d2hpqp_ 43 VQLVENFCRNP 53 (79)
T ss_dssp SCCCTTCCBCS
T ss_pred cccccccccCC
Confidence 34678899887
No 10
>d1nl1a1 g.14.1.1 (A:66-147) Prothrombin {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.70 E-value=35 Score=23.58 Aligned_cols=11 Identities=36% Similarity=0.721 Sum_probs=8.4
Q ss_pred Hhhcccccccc
Q 038043 372 ANLMHNYFNTP 382 (387)
Q Consensus 372 a~l~~~yf~nP 382 (387)
+.+.|+|++||
T Consensus 43 ~~l~~NyCRNP 53 (82)
T d1nl1a1 43 ADLRENFCRNP 53 (82)
T ss_dssp SCCCTTCCBCT
T ss_pred cCcccccccCC
Confidence 45678899887
Done!