BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038044
         (203 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2JD3|A Chain A, Parr From Plasmid Pb171
 pdb|2JD3|B Chain B, Parr From Plasmid Pb171
          Length = 130

 Score = 28.5 bits (62), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 118 NLPMKIFLLLLGFYTANALATILGQTGDWDXXXXXXXXXXIE-GIGMLMYKKPPSSTGRL 176
            LP+ +  +L   ++A+ + T+L QT  W            E G    + K PPS+T  +
Sbjct: 56  RLPVLLTAILSEEFSADQVVTLLSQTTGWKPSQADIRAVLTELGASQSVEKMPPSATDSV 115

Query: 177 QS 178
           Q 
Sbjct: 116 QE 117


>pdb|2ZMF|A Chain A, Crystal Structure Of The C-Terminal Gaf Domain Of Human
           Phosphodiesterase 10a
 pdb|2ZMF|B Chain B, Crystal Structure Of The C-Terminal Gaf Domain Of Human
           Phosphodiesterase 10a
          Length = 189

 Score = 27.3 bits (59), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 75  GISGSGGQESLNGDGPDLGGTRLGRIVSAGGRQLLEKLNIARKNL 119
           G SGS GQ  LN    D+  T    IV+     LLE + I  KNL
Sbjct: 1   GSSGSSGQTELNDFLLDVSKTYFDNIVAIDS--LLEHIXIYAKNL 43


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.138    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,709,406
Number of Sequences: 62578
Number of extensions: 222074
Number of successful extensions: 363
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 361
Number of HSP's gapped (non-prelim): 4
length of query: 203
length of database: 14,973,337
effective HSP length: 94
effective length of query: 109
effective length of database: 9,091,005
effective search space: 990919545
effective search space used: 990919545
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)