BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038044
(203 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O80813|YC20L_ARATH Ycf20-like protein OS=Arabidopsis thaliana GN=At1g65420 PE=2 SV=2
Length = 197
Score = 223 bits (569), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 121/166 (72%), Positives = 133/166 (80%), Gaps = 4/166 (2%)
Query: 42 QTSKIGSKSACFLGKSFLMRRHGWKIAFALDTGG-ISGSGGQ-ESLNGDGPDLGGTRLGR 99
+ S I S + KSF +RR KIAFALDTG I G G+ + +NGD LG TRLGR
Sbjct: 32 KASSITLTSFPYPMKSFQIRRPNRKIAFALDTGSSIPGDSGEGQEMNGDRTGLGSTRLGR 91
Query: 100 IVSAGGRQLLEKLNIARKNLPMKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIE 159
I AGG+QLL K+N ARKN PMKIFLLLLGFYTANALATILGQTGDWDVLVAG+VVAAIE
Sbjct: 92 IAIAGGKQLLGKINSARKNFPMKIFLLLLGFYTANALATILGQTGDWDVLVAGIVVAAIE 151
Query: 160 GIGMLMYKKPPSS--TGRLQSFVVMMNYWKAGVCLGLFVDAFKLGS 203
GIGMLMYKKP SS +G+LQSFVV MN+WKAGVCLGLFVDAFKLGS
Sbjct: 152 GIGMLMYKKPSSSMFSGKLQSFVVFMNFWKAGVCLGLFVDAFKLGS 197
>sp|Q9MUL5|YCF20_MESVI Uncharacterized protein ycf20 OS=Mesostigma viride GN=ycf20 PE=3
SV=1
Length = 116
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 73/116 (62%), Gaps = 4/116 (3%)
Query: 92 LGGTRLGRIVSAGGRQLLEKLNIARKNLPMKIFLLLLGFYTANALATILGQTGDWDVLVA 151
+ TRL + + L K+ N P+KI LLLLGF+ A LAT+ GQTGDWDVLVA
Sbjct: 1 MSNTRLTLFFTNIFQLLDSKIQNYSINFPIKILLLLLGFFIATVLATVFGQTGDWDVLVA 60
Query: 152 GVVVAAIEGIGMLMYKKPPSSTGRL--QSFVVM--MNYWKAGVCLGLFVDAFKLGS 203
G++VA IE +G MY K S ++ SF+ + +NY K G+ GLFVDAFKLGS
Sbjct: 61 GILVAMIEILGNKMYSKKYISKKQVFDISFLSLIGINYIKIGLIFGLFVDAFKLGS 116
>sp|Q1XDS2|YCF20_PORYE Uncharacterized protein ycf20 OS=Porphyra yezoensis GN=ycf20 PE=3
SV=1
Length = 108
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 62/109 (56%), Gaps = 4/109 (3%)
Query: 95 TRLGRIVSAGGRQLLEKLNIARKNLPMKIFLLLLGFYTANALATILGQTGDWDVLVAGVV 154
TRL + + L KL + L + LLLGF+ + L+TI GQTGDW ++ A ++
Sbjct: 4 TRLSTFFAYLIKNLNNKLYYSLSELTTGLISLLLGFFISTGLSTIPGQTGDWGIIAASLI 63
Query: 155 VAAIEGIGMLMYKKPPSSTGRLQSFVVMMNYWKAGVCLGLFVDAFKLGS 203
VAA E ++Y SS +L + + N +K G+ GLFVDAFKLGS
Sbjct: 64 VAATELTSKIVY----SSHKQLNIKINLFNNFKIGITYGLFVDAFKLGS 108
>sp|P51214|YCF20_PORPU Uncharacterized protein ycf20 OS=Porphyra purpurea GN=ycf20 PE=3
SV=1
Length = 108
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 61/109 (55%), Gaps = 4/109 (3%)
Query: 95 TRLGRIVSAGGRQLLEKLNIARKNLPMKIFLLLLGFYTANALATILGQTGDWDVLVAGVV 154
T+L S + L +L + L + LLLGF+ + L+TI GQTGDW ++ A ++
Sbjct: 4 TKLSIFFSYFVQNLSSRLYYSLNELTAGLISLLLGFFISTGLSTIPGQTGDWGIIAASLI 63
Query: 155 VAAIEGIGMLMYKKPPSSTGRLQSFVVMMNYWKAGVCLGLFVDAFKLGS 203
VAAIE + ++Y R+ ++N K G+ GLFVDAFKLGS
Sbjct: 64 VAAIELVSKIVYSNKKKYGVRIN----LLNNLKIGITYGLFVDAFKLGS 108
>sp|P72983|YC20L_SYNY3 Ycf20-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=sll1509 PE=3 SV=1
Length = 109
Score = 63.5 bits (153), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 57/109 (52%), Gaps = 3/109 (2%)
Query: 95 TRLGRIVSAGGRQLLEKLNIARKNLPMKIFLLLLGFYTANALATILGQTGDWDVLVAGVV 154
TRL IV G+QL + + + + + L GF+ A+AT GQ WDV+ A +
Sbjct: 4 TRLNTIVEVRGQQLSQFFRNPWRRISLSLLSFLFGFFVGTAVATTAGQNSQWDVVCAAFI 63
Query: 155 VAAIEGIGMLMYKKPPSSTGRLQSFVVMMNYWKAGVCLGLFVDAFKLGS 203
+ E + Y++ G LQ+ V +N +K GV LF++AFKLGS
Sbjct: 64 LLFCELVNRWFYRRGV-KMGDLQAEV--LNIFKMGVSYSLFLEAFKLGS 109
>sp|Q9MVP1|YCF20_CYACA Uncharacterized protein ycf20 OS=Cyanidium caldarium GN=ycf20 PE=3
SV=1
Length = 101
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 47/80 (58%)
Query: 124 FLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGIGMLMYKKPPSSTGRLQSFVVMM 183
F+ L GF+ ++A +TIL QT +W +L A ++++ +E L +K + + +
Sbjct: 22 FIFLFGFFLSSATSTILIQTNEWSILTAAILISIVELFNYLKHKFQFNDRKSGYNCFFFI 81
Query: 184 NYWKAGVCLGLFVDAFKLGS 203
N K G+ GLF+DAFKLGS
Sbjct: 82 NLAKLGLLYGLFIDAFKLGS 101
>sp|P48409|YCF20_GALSU Uncharacterized protein ycf20 OS=Galdieria sulphuraria GN=ycf20
PE=3 SV=1
Length = 83
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 127 LLGFYTANALATILGQTGDWDVLVAGVVVAAIEGIGMLMYKKPPSSTGRLQSFVVMMNYW 186
LLG +++N L TI QTGDW + + ++A E I + Y + T + + + N +
Sbjct: 9 LLGIFSSNLLCTIYTQTGDWSLYLTSCIIALYEIISYISYNQFIKKTHK--NIINCFNGF 66
Query: 187 KAGVCLGLFVDAFKLGS 203
K G+ GL++DAFKLGS
Sbjct: 67 KIGLIYGLYLDAFKLGS 83
>sp|O78445|YCF20_GUITH Uncharacterized protein ycf20 OS=Guillardia theta GN=ycf20 PE=3
SV=1
Length = 64
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 31/49 (63%)
Query: 126 LLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGIGMLMYKKPPSSTG 174
+L GF+ + L+TIL QTGDW +L A ++VA IE I YKK P G
Sbjct: 11 ILFGFFLSTLLSTILSQTGDWSILAASILVATIELINKNKYKKKPLIIG 59
>sp|P34813|YCF20_AGLNE Uncharacterized protein ycf20 OS=Aglaothamnion neglectum GN=ycf20
PE=3 SV=1
Length = 100
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 7/99 (7%)
Query: 105 GRQLLEKLNIARKNLPMKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGIGML 164
G+ L +N NL +++ L LG++ + +I +TGDW ++ A ++V E + L
Sbjct: 9 GQYLYYHIN----NLSLQLISLFLGYFFCTIICSIPKETGDWGLITALLIVGINETMSAL 64
Query: 165 MYKKPPSSTGRLQSFVVMMNYWKAGVCLGLFVDAFKLGS 203
+Y + V +N K G+ GLFVD+FKLGS
Sbjct: 65 IYSYKKYENNII---VKTINGIKIGIIYGLFVDSFKLGS 100
>sp|Q1BAU4|DNLJ_MYCSS DNA ligase OS=Mycobacterium sp. (strain MCS) GN=ligA PE=3 SV=1
Length = 701
Score = 32.3 bits (72), Expect = 2.2, Method: Composition-based stats.
Identities = 37/108 (34%), Positives = 52/108 (48%), Gaps = 12/108 (11%)
Query: 64 GWKIAFAL-DTGGISGSGGQESLNGDGPDLGGTRL----GRIVSAGGRQLLEKLNIARKN 118
G++ A AL G I+ G +L D DL T L G VSA GR+LL L A+
Sbjct: 475 GYEAAIALLQAGVITDEGDLFTLTED--DLLRTELFTTKGGAVSANGRRLLANLGKAKAQ 532
Query: 119 LPMKIFLLL----LGFYTANALATILGQTGDWDVLVAGVVVAAIEGIG 162
++ + L +G A ALAT G D + + +AA+EG+G
Sbjct: 533 PLWRVLVALSIRHVGPTAARALATEFGSL-DAIIEASEDQLAAVEGVG 579
>sp|A1UE68|DNLJ_MYCSK DNA ligase OS=Mycobacterium sp. (strain KMS) GN=ligA PE=3 SV=1
Length = 701
Score = 32.3 bits (72), Expect = 2.2, Method: Composition-based stats.
Identities = 37/108 (34%), Positives = 52/108 (48%), Gaps = 12/108 (11%)
Query: 64 GWKIAFAL-DTGGISGSGGQESLNGDGPDLGGTRL----GRIVSAGGRQLLEKLNIARKN 118
G++ A AL G I+ G +L D DL T L G VSA GR+LL L A+
Sbjct: 475 GYEAAIALLQAGVITDEGDLFTLTED--DLLRTELFTTKGGAVSANGRRLLANLGKAKAQ 532
Query: 119 LPMKIFLLL----LGFYTANALATILGQTGDWDVLVAGVVVAAIEGIG 162
++ + L +G A ALAT G D + + +AA+EG+G
Sbjct: 533 PLWRVLVALSIRHVGPTAARALATEFGSL-DAIIEASEDQLAAVEGVG 579
>sp|A3PXM2|DNLJ_MYCSJ DNA ligase OS=Mycobacterium sp. (strain JLS) GN=ligA PE=3 SV=1
Length = 701
Score = 32.3 bits (72), Expect = 2.2, Method: Composition-based stats.
Identities = 37/108 (34%), Positives = 52/108 (48%), Gaps = 12/108 (11%)
Query: 64 GWKIAFAL-DTGGISGSGGQESLNGDGPDLGGTRL----GRIVSAGGRQLLEKLNIARKN 118
G++ A AL G I+ G +L D DL T L G VSA GR+LL L A+
Sbjct: 475 GYEAAIALLQAGVITDEGDLFTLTED--DLLRTELFTTKGGAVSANGRRLLANLGKAKAQ 532
Query: 119 LPMKIFLLL----LGFYTANALATILGQTGDWDVLVAGVVVAAIEGIG 162
++ + L +G A ALAT G D + + +AA+EG+G
Sbjct: 533 PLWRVLVALSIRHVGPTAARALATEFGSL-DAIIEASEDQLAAVEGVG 579
>sp|Q6BM23|HEM3_DEBHA Porphobilinogen deaminase OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=HEM3 PE=3 SV=1
Length = 361
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 86 NGDGPDLGGTRLGRIVSA-GGRQLLEKLNIARKNLP 120
N D D G ++G ++SA GGR++L +N R NLP
Sbjct: 307 NKDDADAIGIKVGDLLSAKGGREILNSINFERINLP 342
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.138 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,604,776
Number of Sequences: 539616
Number of extensions: 3170757
Number of successful extensions: 7588
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 7555
Number of HSP's gapped (non-prelim): 35
length of query: 203
length of database: 191,569,459
effective HSP length: 112
effective length of query: 91
effective length of database: 131,132,467
effective search space: 11933054497
effective search space used: 11933054497
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)