Query 038044
Match_columns 203
No_of_seqs 115 out of 136
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 06:59:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038044.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038044hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04483 DUF565: Protein of un 99.9 4.1E-25 9E-30 157.2 6.7 60 142-203 1-60 (60)
2 TIGR00870 trp transient-recept 71.4 64 0.0014 31.9 11.6 101 98-201 405-524 (743)
3 COG3619 Predicted membrane pro 60.3 74 0.0016 28.2 8.8 53 99-151 147-206 (226)
4 COG3619 Predicted membrane pro 59.0 59 0.0013 28.9 7.9 42 120-161 171-213 (226)
5 TIGR00400 mgtE Mg2+ transporte 55.1 62 0.0013 30.6 7.9 38 114-151 280-317 (449)
6 PF06912 DUF1275: Protein of u 46.5 1.4E+02 0.0031 24.7 8.0 60 97-156 140-202 (209)
7 COG0598 CorA Mg2+ and Co2+ tra 45.6 1E+02 0.0022 27.8 7.4 78 93-170 239-321 (322)
8 PF05957 DUF883: Bacterial pro 45.3 61 0.0013 24.0 5.1 33 102-137 59-92 (94)
9 PRK11573 hypothetical protein; 45.0 2.1E+02 0.0046 27.0 9.7 76 92-167 18-103 (413)
10 PTZ00046 rifin; Provisional 43.9 20 0.00044 34.0 2.8 21 154-176 330-350 (358)
11 TIGR01477 RIFIN variant surfac 43.5 21 0.00045 33.9 2.8 22 153-176 324-345 (353)
12 TIGR00807 malonate_madL malona 39.5 74 0.0016 26.3 5.0 38 120-157 7-44 (125)
13 PF02009 Rifin_STEVOR: Rifin/s 39.0 22 0.00048 32.7 2.2 25 150-176 267-291 (299)
14 TIGR02161 napC_nirT periplasmi 38.7 49 0.0011 28.3 4.1 31 106-138 3-33 (185)
15 PF11833 DUF3353: Protein of u 37.8 96 0.0021 26.7 5.8 37 106-142 130-166 (194)
16 PF11982 DUF3483: Domain of un 35.7 75 0.0016 28.5 4.9 26 113-138 125-150 (224)
17 PRK15071 lipopolysaccharide AB 34.5 1.2E+02 0.0027 27.0 6.2 23 129-151 314-336 (356)
18 KOG3609 Receptor-activated Ca2 34.3 5.6E+02 0.012 27.2 11.4 95 107-202 409-521 (822)
19 TIGR00383 corA magnesium Mg(2+ 33.4 2.1E+02 0.0045 25.1 7.3 44 96-139 238-281 (318)
20 PF03817 MadL: Malonate transp 33.0 1E+02 0.0022 25.4 4.9 37 120-156 7-43 (125)
21 PRK10617 cytochrome c-type pro 32.5 82 0.0018 27.4 4.6 31 106-138 12-42 (200)
22 PF01595 DUF21: Domain of unkn 31.8 2.6E+02 0.0056 22.1 7.2 78 91-168 25-113 (183)
23 PF11712 Vma12: Endoplasmic re 28.7 1.5E+02 0.0033 23.7 5.3 19 149-167 117-135 (142)
24 PF06738 DUF1212: Protein of u 28.5 3.2E+02 0.007 22.2 10.0 86 103-196 86-171 (193)
25 PF04246 RseC_MucC: Positive r 28.4 1.3E+02 0.0028 23.6 4.7 44 121-168 77-120 (135)
26 PF06912 DUF1275: Protein of u 27.3 1.9E+02 0.0042 23.9 5.8 62 97-158 144-207 (209)
27 PF11960 DUF3474: Domain of un 27.3 2.5E+02 0.0054 23.5 6.3 66 54-123 49-125 (136)
28 PF02674 Colicin_V: Colicin V 27.2 2.4E+02 0.0052 21.6 6.0 34 108-142 14-47 (146)
29 PF12590 Acyl-thio_N: Acyl-ATP 26.0 55 0.0012 27.1 2.3 21 138-158 88-108 (129)
30 PRK10404 hypothetical protein; 25.0 1.9E+02 0.004 22.6 5.0 26 108-136 72-98 (101)
31 PF06645 SPC12: Microsomal sig 23.7 3E+02 0.0066 20.2 6.2 45 120-170 19-63 (76)
32 KOG3676 Ca2+-permeable cation 23.5 6E+02 0.013 26.9 9.5 39 161-199 516-557 (782)
33 COG4064 MtrG Tetrahydromethano 23.4 50 0.0011 25.0 1.4 10 187-196 49-58 (75)
34 PF07787 DUF1625: Protein of u 23.3 2E+02 0.0044 25.0 5.4 53 116-168 184-248 (248)
35 COG3086 RseC Positive regulato 23.1 2.3E+02 0.0049 24.1 5.4 54 115-169 74-127 (150)
36 PF13150 DUF3989: Protein of u 22.7 3.1E+02 0.0066 20.8 5.6 19 102-120 5-23 (85)
37 PRK13747 putative mercury resi 22.2 1.3E+02 0.0029 23.0 3.5 46 114-161 13-67 (78)
38 COG4536 CorB Putative Mg2+ and 22.2 79 0.0017 30.8 2.8 75 89-163 26-110 (423)
39 PF12732 YtxH: YtxH-like prote 21.9 65 0.0014 23.0 1.8 15 127-141 2-16 (74)
40 PF05052 MerE: MerE protein; 21.8 1.2E+02 0.0026 23.1 3.1 34 126-161 34-67 (75)
41 COG0818 DgkA Diacylglycerol ki 21.5 3.7E+02 0.008 22.0 6.2 67 93-165 7-76 (123)
42 PF10031 DUF2273: Small integr 21.3 1.9E+02 0.0041 20.0 3.9 39 115-157 3-41 (51)
43 COG3263 NhaP-type Na+/H+ and K 20.8 1.6E+02 0.0035 29.6 4.6 47 143-195 157-203 (574)
44 PF03739 YjgP_YjgQ: Predicted 20.4 3.2E+02 0.0069 24.0 6.1 20 132-151 317-336 (354)
45 PF01544 CorA: CorA-like Mg2+ 20.1 1.7E+02 0.0036 24.6 4.1 26 117-142 230-256 (292)
No 1
>PF04483 DUF565: Protein of unknown function (DUF565); InterPro: IPR007572 This family represents Ycf20, it is found in cyanobacteria and is also encoded in plant and algal chloroplasts; its function is unknown. As the family is exclusively found in phototrophic organisms it may therefore play a role in photosynthesis.
Probab=99.91 E-value=4.1e-25 Score=157.20 Aligned_cols=60 Identities=48% Similarity=0.816 Sum_probs=55.2
Q ss_pred hccCchHHHHHHHHHHHHHHhhhhccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhccCC
Q 038044 142 QTGDWDVLVAGVVVAAIEGIGMLMYKKPPSSTGRLQSFVVMMNYWKAGVCLGLFVDAFKLGS 203 (203)
Q Consensus 142 q~g~wD~l~A~iiVl~iEvis~l~Yr~~~~~~~~~~l~~~lLN~fKIGllYGLFLEAFKLGS 203 (203)
|+++|||++|+++|+++|++++++|+++....+ +++++++|+||||++||||+|||||||
T Consensus 1 Q~g~wD~i~a~~iv~~~E~i~~l~Y~~~~~~~~--~~~~~~lN~~KiGl~YgLfleAFKLGS 60 (60)
T PF04483_consen 1 QTGDWDVIAAAIIVLFIEVISRLRYSKPKKKRK--SLLVELLNNFKIGLLYGLFLEAFKLGS 60 (60)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHhhcccccccc--chHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 789999999999999999999999999875433 348999999999999999999999998
No 2
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=71.42 E-value=64 Score=31.93 Aligned_cols=101 Identities=10% Similarity=0.059 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhhh------ccC----------chHHHHHHHHHHHHHH
Q 038044 98 GRIVSAGGRQLLEKLNIARKNLPMKIFLLLLGFYTANALATILGQ------TGD----------WDVLVAGVVVAAIEGI 161 (203)
Q Consensus 98 ~rli~~i~~rL~~~~~npWRR~Sl~lIsLL~GFflgna~sTi~Gq------~g~----------wD~l~A~iiVl~iEvi 161 (203)
..........+..++.+.|.-+-...+.+.+..++...+..+... ... ...++.++++.++-++
T Consensus 405 ~e~~~~~~~g~~~y~~~~wn~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~l~~~rll 484 (743)
T TIGR00870 405 GEEKLIWLGGIFEYIHQLWNILDFGMNSFYLATFLDRPFAILFVTQAFLVLREHWLRFDPTLIEEALFAFALVLSWLNLL 484 (743)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH
Confidence 333444555566788888887766555554444444333322111 111 2244555555556655
Q ss_pred hhhhccCCCCCCcchh--hHHHHH-HHHHHHHHHHHHHHHhcc
Q 038044 162 GMLMYKKPPSSTGRLQ--SFVVMM-NYWKAGVCLGLFVDAFKL 201 (203)
Q Consensus 162 s~l~Yr~~~~~~~~~~--l~~~lL-N~fKIGllYGLFLEAFKL 201 (203)
+|-+..+..+++. +.-.+. |.+|.-++|.+|+=||=.
T Consensus 485 ---~~~~~~~~lGp~~i~l~~mi~~dl~~F~~i~~v~l~aF~~ 524 (743)
T TIGR00870 485 ---YIFRGNQHLGPLQIMIGRMILGDILRFLFIYAVVLFGFAC 524 (743)
T ss_pred ---HHHhhchhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222223333 224456 999999999999999843
No 3
>COG3619 Predicted membrane protein [Function unknown]
Probab=60.27 E-value=74 Score=28.24 Aligned_cols=53 Identities=19% Similarity=0.184 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHhh---h----hhhhhHHHHHHHHHHHHHHHHHHhhhhccCchHHHH
Q 038044 99 RIVSAGGRQLLEKLNI---A----RKNLPMKIFLLLLGFYTANALATILGQTGDWDVLVA 151 (203)
Q Consensus 99 rli~~i~~rL~~~~~n---p----WRR~Sl~lIsLL~GFflgna~sTi~Gq~g~wD~l~A 151 (203)
--+.+..+.+.+|+.. . |.++...++++..|-.+|+.++..+|..+.|-|.+.
T Consensus 147 Gnl~~~~~~l~~~l~~k~~~~~~~~~~~~~~il~f~~GAi~g~ll~~~~g~~al~~~~~~ 206 (226)
T COG3619 147 GNLKSAGRGLGRYLSGKDKEKLRDWLIYLSLILSFIVGAICGALLTLFFGLKALWVVAAL 206 (226)
T ss_pred hhHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3445555556666655 4 444444445555555555555555555555544433
No 4
>COG3619 Predicted membrane protein [Function unknown]
Probab=58.97 E-value=59 Score=28.86 Aligned_cols=42 Identities=17% Similarity=0.178 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhh-ccCchHHHHHHHHHHHHHH
Q 038044 120 PMKIFLLLLGFYTANALATILGQ-TGDWDVLVAGVVVAAIEGI 161 (203)
Q Consensus 120 Sl~lIsLL~GFflgna~sTi~Gq-~g~wD~l~A~iiVl~iEvi 161 (203)
++.-+++..+|.+|...+..+++ .+++-..+...+++..=+.
T Consensus 171 ~~~~~~~il~f~~GAi~g~ll~~~~g~~al~~~~~~i~~~~~~ 213 (226)
T COG3619 171 WLIYLSLILSFIVGAICGALLTLFFGLKALWVVAALILAVYLL 213 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 34578899999999999999997 5566666666666644443
No 5
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=55.08 E-value=62 Score=30.58 Aligned_cols=38 Identities=16% Similarity=0.167 Sum_probs=27.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhhhhccCchHHHH
Q 038044 114 IARKNLPMKIFLLLLGFYTANALATILGQTGDWDVLVA 151 (203)
Q Consensus 114 npWRR~Sl~lIsLL~GFflgna~sTi~Gq~g~wD~l~A 151 (203)
-.++|++++++.++.|++.|..++.+-.....+-.+++
T Consensus 280 ~~~~R~~wL~v~~~~~~~t~~ii~~f~~~l~~~~~l~~ 317 (449)
T TIGR00400 280 MAKNRIIWLLVLLVSSTFTATIISNYEDLLLSLVALAN 317 (449)
T ss_pred HHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578999999999999999988876555444433333
No 6
>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although a few members are thought to be membrane proteins.
Probab=46.45 E-value=1.4e+02 Score=24.68 Aligned_cols=60 Identities=18% Similarity=0.403 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHHHHhhhhh--hhhHHHHHHHHHHHHHHHHHHhhhhc-cCchHHHHHHHHH
Q 038044 97 LGRIVSAGGRQLLEKLNIARK--NLPMKIFLLLLGFYTANALATILGQT-GDWDVLVAGVVVA 156 (203)
Q Consensus 97 L~rli~~i~~rL~~~~~npWR--R~Sl~lIsLL~GFflgna~sTi~Gq~-g~wD~l~A~iiVl 156 (203)
.--.+..+.+.+.+++...-+ +....-+..+++|++|..++....+. +.+-.+.+.++++
T Consensus 140 ~TG~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~f~~Ga~~ga~l~~~~~~~al~~~~~~l~ 202 (209)
T PF06912_consen 140 MTGNLTDLGIDLARYLRGKDRALRRALRYLLIILSFFIGAILGALLYRRLGFWALLLPALLLL 202 (209)
T ss_pred hHhhHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 333444555555554433322 34444555666666666666655543 3344444444333
No 7
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=45.64 E-value=1e+02 Score=27.79 Aligned_cols=78 Identities=13% Similarity=0.018 Sum_probs=48.1
Q ss_pred CCchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhh--hccCch---HHHHHHHHHHHHHHhhhhcc
Q 038044 93 GGTRLGRIVSAGGRQLLEKLNIARKNLPMKIFLLLLGFYTANALATILG--QTGDWD---VLVAGVVVAAIEGIGMLMYK 167 (203)
Q Consensus 93 Q~TRL~rli~~i~~rL~~~~~npWRR~Sl~lIsLL~GFflgna~sTi~G--q~g~wD---~l~A~iiVl~iEvis~l~Yr 167 (203)
.+.+++.+.+.....+...-+.-=|.+++.-..++-==++++.+|+-++ ...+|. +++.+++++++=++.+.+.|
T Consensus 239 ~~~~l~~l~d~~~s~is~~~N~imk~LTi~s~iflPpTlIagiyGMNf~~mPel~~~~Gy~~~l~~m~~~~~~~~~~frr 318 (322)
T COG0598 239 LRERLSSLLDAYLSLINNNQNEIMKILTIVSTIFLPPTLITGFYGMNFKGMPELDWPYGYPIALILMLLLALLLYLYFRR 318 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHcccccCCCCCcCCCCcccHHHHHHHHHHHHHHHHHHHHh
Confidence 3457777888887777777777777777666655555555555555555 244554 56666666666666445555
Q ss_pred CCC
Q 038044 168 KPP 170 (203)
Q Consensus 168 ~~~ 170 (203)
+.|
T Consensus 319 k~W 321 (322)
T COG0598 319 KGW 321 (322)
T ss_pred cCc
Confidence 443
No 8
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=45.31 E-value=61 Score=24.03 Aligned_cols=33 Identities=12% Similarity=0.070 Sum_probs=21.6
Q ss_pred HHHHHHHHHHH-hhhhhhhhHHHHHHHHHHHHHHHHH
Q 038044 102 SAGGRQLLEKL-NIARKNLPMKIFLLLLGFYTANALA 137 (203)
Q Consensus 102 ~~i~~rL~~~~-~npWRR~Sl~lIsLL~GFflgna~s 137 (203)
........+++ .|||+.. .|++.+||++|-.++
T Consensus 59 ~~~~~~~~~~V~e~P~~sv---giAagvG~llG~Ll~ 92 (94)
T PF05957_consen 59 REAAEQTEDYVRENPWQSV---GIAAGVGFLLGLLLR 92 (94)
T ss_pred HHHHHHHHHHHHHChHHHH---HHHHHHHHHHHHHHh
Confidence 34455566666 5699854 477778888876653
No 9
>PRK11573 hypothetical protein; Provisional
Probab=44.97 E-value=2.1e+02 Score=26.98 Aligned_cols=76 Identities=22% Similarity=0.208 Sum_probs=41.7
Q ss_pred CCCchhHHHHH---HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhhh--ccCchH-----HHHHHHHHHHHHH
Q 038044 92 LGGTRLGRIVS---AGGRQLLEKLNIARKNLPMKIFLLLLGFYTANALATILGQ--TGDWDV-----LVAGVVVAAIEGI 161 (203)
Q Consensus 92 lQ~TRL~rli~---~i~~rL~~~~~npWRR~Sl~lIsLL~GFflgna~sTi~Gq--~g~wD~-----l~A~iiVl~iEvi 161 (203)
..++||.++.. .-.+++....++|-|-++..++.--+.-.+++++++.... .+.+.. ++.++++++-|++
T Consensus 18 ~~~~~l~~l~~~g~~~a~~l~~l~~~~~~~Lstiligntl~~i~~~~l~~~~~~~~~~~~~~~ia~~i~t~l~lvfGEii 97 (413)
T PRK11573 18 LNRYRLRHMAKQGNRSAKRVEKLLRKPDRLISLVLIGNNLVNILASALGTIVGMRLYGDAGVAIATGVLTFVVLVFAEVL 97 (413)
T ss_pred cCHHHHHHHHHcCChhHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhHh
Confidence 44567777765 3456677777888887766665555544444444443321 112222 2234566777887
Q ss_pred hhhhcc
Q 038044 162 GMLMYK 167 (203)
Q Consensus 162 s~l~Yr 167 (203)
=+....
T Consensus 98 PK~la~ 103 (413)
T PRK11573 98 PKTIAA 103 (413)
T ss_pred HHHHHH
Confidence 444443
No 10
>PTZ00046 rifin; Provisional
Probab=43.85 E-value=20 Score=34.00 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=12.2
Q ss_pred HHHHHHHHhhhhccCCCCCCcch
Q 038044 154 VVAAIEGIGMLMYKKPPSSTGRL 176 (203)
Q Consensus 154 iVl~iEvis~l~Yr~~~~~~~~~ 176 (203)
+.+++=++ +||||+++-.+++
T Consensus 330 IMvIIYLI--LRYRRKKKMkKKL 350 (358)
T PTZ00046 330 IMVIIYLI--LRYRRKKKMKKKL 350 (358)
T ss_pred HHHHHHHH--HHhhhcchhHHHH
Confidence 33445555 7888876644443
No 11
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=43.50 E-value=21 Score=33.91 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=12.7
Q ss_pred HHHHHHHHHhhhhccCCCCCCcch
Q 038044 153 VVVAAIEGIGMLMYKKPPSSTGRL 176 (203)
Q Consensus 153 iiVl~iEvis~l~Yr~~~~~~~~~ 176 (203)
++.+++=++ +||||+++-.+++
T Consensus 324 LIMvIIYLI--LRYRRKKKMkKKL 345 (353)
T TIGR01477 324 LIMVIIYLI--LRYRRKKKMKKKL 345 (353)
T ss_pred HHHHHHHHH--HHhhhcchhHHHH
Confidence 333455556 7888876643443
No 12
>TIGR00807 malonate_madL malonate transporter, MadL subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM. The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=39.48 E-value=74 Score=26.27 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHH
Q 038044 120 PMKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAA 157 (203)
Q Consensus 120 Sl~lIsLL~GFflgna~sTi~Gq~g~wD~l~A~iiVl~ 157 (203)
.++.++-|.|-|+|..++..+|..++-..+..+.++++
T Consensus 7 alLa~C~L~G~~lGdlLG~llGV~aNVGGVGiAMlLLi 44 (125)
T TIGR00807 7 ALLAVCHLLGVYLGNILGMALGVKANVGGVGIAMILLI 44 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHH
Confidence 46779999999999999999999888776665544433
No 13
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=39.00 E-value=22 Score=32.72 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCCcch
Q 038044 150 VAGVVVAAIEGIGMLMYKKPPSSTGRL 176 (203)
Q Consensus 150 ~A~iiVl~iEvis~l~Yr~~~~~~~~~ 176 (203)
+.+++++++=+| ++|||+++...++
T Consensus 267 iIVLIMvIIYLI--LRYRRKKKmkKKl 291 (299)
T PF02009_consen 267 IIVLIMVIIYLI--LRYRRKKKMKKKL 291 (299)
T ss_pred HHHHHHHHHHHH--HHHHHHhhhhHHH
Confidence 334444455556 7888865543333
No 14
>TIGR02161 napC_nirT periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family. Nearly every member of this subfamily is NapC, a predicted membrane-anchored four-heme c-type cytochrome that forms one component of the periplasmic nitrate reductase along with NapA, NapB, NapD, NapE, and NapF subunits. A single known exception at this time is NirT, which is instead a component of a nitrite reductase. This family excludes TorC subunits of trimethylamine N-oxide (TMAO) reductases.
Probab=38.71 E-value=49 Score=28.30 Aligned_cols=31 Identities=23% Similarity=0.270 Sum_probs=19.2
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 038044 106 RQLLEKLNIARKNLPMKIFLLLLGFYTANALAT 138 (203)
Q Consensus 106 ~rL~~~~~npWRR~Sl~lIsLL~GFflgna~sT 138 (203)
.++.+|+..|+ ++++.+ .+++||.+|-.+..
T Consensus 3 ~~~~~~~~k~~-~~~~~~-ll~~g~~~G~~~~~ 33 (185)
T TIGR02161 3 KRFWKWLRRPS-RLALGT-LLLGGFVGGIVFWG 33 (185)
T ss_pred HHHHHHHHhhH-HHHHHH-HHHHHHHHHHHHHH
Confidence 46778888888 566544 34566666655443
No 15
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=37.80 E-value=96 Score=26.73 Aligned_cols=37 Identities=19% Similarity=0.085 Sum_probs=31.1
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 038044 106 RQLLEKLNIARKNLPMKIFLLLLGFYTANALATILGQ 142 (203)
Q Consensus 106 ~rL~~~~~npWRR~Sl~lIsLL~GFflgna~sTi~Gq 142 (203)
=.+.++-++.+|-+-+.+..|.+|.++|+.+...+-.
T Consensus 130 yfl~~K~~~~~rA~~~~~~~L~~G~~lGs~l~~~l~~ 166 (194)
T PF11833_consen 130 YFLNRKERKLGRAFLWTLGGLVVGLILGSLLASWLPV 166 (194)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4567777889999999999999999999999876644
No 16
>PF11982 DUF3483: Domain of unknown function (DUF3483); InterPro: IPR021872 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is about 230 amino acids in length. This domain is found associated with PF02754 from PFAM.
Probab=35.68 E-value=75 Score=28.55 Aligned_cols=26 Identities=27% Similarity=0.416 Sum_probs=23.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHH
Q 038044 113 NIARKNLPMKIFLLLLGFYTANALAT 138 (203)
Q Consensus 113 ~npWRR~Sl~lIsLL~GFflgna~sT 138 (203)
++||.|++..+.++-.|||+.+....
T Consensus 125 ~G~w~rLP~sL~afa~g~~l~tL~~a 150 (224)
T PF11982_consen 125 KGPWMRLPKSLLAFALGFFLATLPAA 150 (224)
T ss_pred CCChhHhHHHHHHHHHHHHHHHHHhh
Confidence 47999999999999999999888665
No 17
>PRK15071 lipopolysaccharide ABC transporter permease; Provisional
Probab=34.50 E-value=1.2e+02 Score=27.05 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhhhhccCchHHHH
Q 038044 129 GFYTANALATILGQTGDWDVLVA 151 (203)
Q Consensus 129 GFflgna~sTi~Gq~g~wD~l~A 151 (203)
+||+-+.++..+|..+.++|..|
T Consensus 314 ~y~~~~~~~~~lg~~g~l~P~la 336 (356)
T PRK15071 314 VFYVSNEIFGPLSLVYGIPPIIG 336 (356)
T ss_pred HHHHHHHHHHHHHHhcCccHHHH
Confidence 34444445555555555555544
No 18
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=34.26 E-value=5.6e+02 Score=27.23 Aligned_cols=95 Identities=13% Similarity=0.079 Sum_probs=58.6
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhc--------cCch---H-------HHHHHHHHHHHHHhhhhccC
Q 038044 107 QLLEKLNIARKNLPMKIFLLLLGFYTANALATILGQT--------GDWD---V-------LVAGVVVAAIEGIGMLMYKK 168 (203)
Q Consensus 107 rL~~~~~npWRR~Sl~lIsLL~GFflgna~sTi~Gq~--------g~wD---~-------l~A~iiVl~iEvis~l~Yr~ 168 (203)
-+.+++.+.|+-+....+++.+--|+.=+++-.--.. -+|| | +|++.+.-+.+++-.+--..
T Consensus 409 G~~~y~~~~Wn~lDf~m~siyl~s~~lr~~a~~~~~~~~~~~~~R~~W~~~dp~ll~E~lfAiA~V~S~lrl~~i~t~n~ 488 (822)
T KOG3609|consen 409 GRDGYLAFWWNWLDFAMISIYLASFILRAVAWGKREAFDPSSVDRMHWPSFDPSLLAEGLFAIANVLSFLKLFYIFTMNP 488 (822)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3677888999999988888776665554444321111 3453 3 34444555555542222122
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHHHHHHHhccC
Q 038044 169 PPSSTGRLQSFVVMMNYWKAGVCLGLFVDAFKLG 202 (203)
Q Consensus 169 ~~~~~~~~~l~~~lLN~fKIGllYGLFLEAFKLG 202 (203)
.. .+-+..+.-.+.|-+|.=++|-|++=||-.|
T Consensus 489 ~l-GPlqISlGrmv~Di~kF~~I~~lvl~aF~iG 521 (822)
T KOG3609|consen 489 SL-GPLQISLGRMVGDIYKFLFIFVLVLVAFSIG 521 (822)
T ss_pred cc-cchhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11 1123345678899999999999999999876
No 19
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=33.42 E-value=2.1e+02 Score=25.09 Aligned_cols=44 Identities=14% Similarity=0.021 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh
Q 038044 96 RLGRIVSAGGRQLLEKLNIARKNLPMKIFLLLLGFYTANALATI 139 (203)
Q Consensus 96 RL~rli~~i~~rL~~~~~npWRR~Sl~lIsLL~GFflgna~sTi 139 (203)
+++.+.+..........++--|.+++.-..++-==++++.+|+-
T Consensus 238 ~l~~l~d~~~~~~s~~~N~~mk~LTvvt~IflP~t~IaGiyGMN 281 (318)
T TIGR00383 238 LLSSLMDLYLSLVNNKMNEIMKILTVVSTIFIPLTFIAGIYGMN 281 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 45555555555566666666666666554444444444444443
No 20
>PF03817 MadL: Malonate transporter MadL subunit; InterPro: IPR004690 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM. The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=32.95 E-value=1e+02 Score=25.44 Aligned_cols=37 Identities=14% Similarity=0.267 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHH
Q 038044 120 PMKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVA 156 (203)
Q Consensus 120 Sl~lIsLL~GFflgna~sTi~Gq~g~wD~l~A~iiVl 156 (203)
.++.++.|.|-|+|..++..+|..++-..+..+.+++
T Consensus 7 AlLa~C~l~G~~~GdlLG~llGV~aNVGGVGiAMlLL 43 (125)
T PF03817_consen 7 ALLAICTLAGVFLGDLLGALLGVKANVGGVGIAMLLL 43 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHH
Confidence 4677999999999999999999988877666544443
No 21
>PRK10617 cytochrome c-type protein NapC; Provisional
Probab=32.53 E-value=82 Score=27.43 Aligned_cols=31 Identities=23% Similarity=0.328 Sum_probs=19.7
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 038044 106 RQLLEKLNIARKNLPMKIFLLLLGFYTANALAT 138 (203)
Q Consensus 106 ~rL~~~~~npWRR~Sl~lIsLL~GFflgna~sT 138 (203)
+++.+|+.+|. ++++.+ .+++||.+|-.+.+
T Consensus 12 ~~~~~~~~k~~-~~~l~~-lll~g~~~G~~~~~ 42 (200)
T PRK10617 12 KRLWKWWRTPS-RLALGT-LLLIGFVGGIIFWG 42 (200)
T ss_pred HHHHHHHHhhH-HHHHHH-HHHHHHHHHHHHHH
Confidence 56777888888 455433 34577777665554
No 22
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=31.84 E-value=2.6e+02 Score=22.09 Aligned_cols=78 Identities=22% Similarity=0.312 Sum_probs=36.7
Q ss_pred CCCCchhHHHHH---HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhhh--ccC-ch-----HHHHHHHHHHHH
Q 038044 91 DLGGTRLGRIVS---AGGRQLLEKLNIARKNLPMKIFLLLLGFYTANALATILGQ--TGD-WD-----VLVAGVVVAAIE 159 (203)
Q Consensus 91 ~lQ~TRL~rli~---~i~~rL~~~~~npWRR~Sl~lIsLL~GFflgna~sTi~Gq--~g~-wD-----~l~A~iiVl~iE 159 (203)
.+.+.|++.+.+ .-.+++..-.++|-|-+...++.--+.-.+++.+.+.+.. .+. +. .+.+++++++.|
T Consensus 25 ~l~~~~l~~~~~~~~~~a~~~~~l~~~~~~~l~t~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~lif~e 104 (183)
T PF01595_consen 25 SLSRSRLEELAEEGDKRARRLLKLLERPERLLSTILLGNTLSNVLAGVLATVLASNLFGPWWALLIAFLIITLLILIFGE 104 (183)
T ss_pred hcCHHHHHHHHHcCCHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 445567776665 3566666666776554444333222222222222222211 111 22 233455667777
Q ss_pred HHhhhhccC
Q 038044 160 GIGMLMYKK 168 (203)
Q Consensus 160 vis~l~Yr~ 168 (203)
++=+..-++
T Consensus 105 ~lPk~l~~~ 113 (183)
T PF01595_consen 105 ILPKALARR 113 (183)
T ss_pred HHHHHHHHH
Confidence 775555443
No 23
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=28.74 E-value=1.5e+02 Score=23.72 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHhhhhcc
Q 038044 149 LVAGVVVAAIEGIGMLMYK 167 (203)
Q Consensus 149 l~A~iiVl~iEvis~l~Yr 167 (203)
+.++++|+++|+.-.+.|-
T Consensus 117 l~~al~vlvAEv~l~~~y~ 135 (142)
T PF11712_consen 117 LFGALLVLVAEVVLYIRYL 135 (142)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5668899999998555553
No 24
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=28.55 E-value=3.2e+02 Score=22.20 Aligned_cols=86 Identities=16% Similarity=0.147 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHhhhhccCCCCCCcchhhHHHH
Q 038044 103 AGGRQLLEKLNIARKNLPMKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGIGMLMYKKPPSSTGRLQSFVVM 182 (203)
Q Consensus 103 ~i~~rL~~~~~npWRR~Sl~lIsLL~GFflgna~sTi~Gq~g~wD~l~A~iiVl~iEvis~l~Yr~~~~~~~~~~l~~~l 182 (203)
+..++|++--+.| .+++..+..+-.| ..+..|+..+| -..+|.++++++-++.=++..+.-|++. .......
T Consensus 86 ea~~~L~~I~~~~-~~y~~~~~~l~~~-l~~~~fa~lfg-g~~~~~~~a~i~g~~~~~~~~~~~r~~~-----~~~~~~~ 157 (193)
T PF06738_consen 86 EAIERLDEIDREP-PRYPPWLVILAAG-LASAAFALLFG-GSWIDMIVAFILGLLVGLLRQLLSRRRL-----NSFIQEF 157 (193)
T ss_pred HHHHHHHHHhhCC-CCCCHHHHHHHHH-HHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHhccc-----hHHHHHH
Confidence 3455666655555 2344433333333 33445555544 3356888888777777766444444322 2345677
Q ss_pred HHHHHHHHHHHHHH
Q 038044 183 MNYWKAGVCLGLFV 196 (203)
Q Consensus 183 LN~fKIGllYGLFL 196 (203)
+-.+=.+++..++.
T Consensus 158 ~aa~~~~~~a~~~~ 171 (193)
T PF06738_consen 158 IAAFLASLLAALLA 171 (193)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777776665
No 25
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=28.39 E-value=1.3e+02 Score=23.56 Aligned_cols=44 Identities=18% Similarity=0.138 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHhhhhccC
Q 038044 121 MKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGIGMLMYKK 168 (203)
Q Consensus 121 l~lIsLL~GFflgna~sTi~Gq~g~wD~l~A~iiVl~iEvis~l~Yr~ 168 (203)
+=++.+++|.++|+.++.. ..|.++.++..+++.=++-+.+.|+
T Consensus 77 lPll~li~g~~l~~~~~~~----e~~~~l~~l~~l~~~~~~~~~~~~~ 120 (135)
T PF04246_consen 77 LPLLALIAGAVLGSYLGGS----ELWAILGGLLGLALGFLILRLFDRR 120 (135)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3355666666666665543 4455555655555555554444444
No 26
>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although a few members are thought to be membrane proteins.
Probab=27.33 E-value=1.9e+02 Score=23.92 Aligned_cols=62 Identities=16% Similarity=0.014 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHHHH--HhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHHH
Q 038044 97 LGRIVSAGGRQLLEK--LNIARKNLPMKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAI 158 (203)
Q Consensus 97 L~rli~~i~~rL~~~--~~npWRR~Sl~lIsLL~GFflgna~sTi~Gq~g~wD~l~A~iiVl~i 158 (203)
+.++...+.+.+... ....+++....+++++.|-.+|..+....+....|=+.+..+++.++
T Consensus 144 l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~f~~Ga~~ga~l~~~~~~~al~~~~~~l~~~~~~ 207 (209)
T PF06912_consen 144 LTDLGIDLARYLRGKDRALRRALRYLLIILSFFIGAILGALLYRRLGFWALLLPALLLLLLALL 207 (209)
T ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 445555555443333 33577778899999999999999999999999999888887777653
No 27
>PF11960 DUF3474: Domain of unknown function (DUF3474); InterPro: IPR021863 This presumed domain is functionally uncharacterised. This domain is found in bacteria and eukaryotes. This domain is typically between 126 to 140 amino acids in length. This domain is found associated with PF00487 from PFAM. ; GO: 0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water, 0055114 oxidation-reduction process
Probab=27.31 E-value=2.5e+02 Score=23.49 Aligned_cols=66 Identities=14% Similarity=0.096 Sum_probs=42.2
Q ss_pred cccchhhhcccceeeeeeccCCCCCCCC-----------CcccCCCCCCCCCchhHHHHHHHHHHHHHHHhhhhhhhhHH
Q 038044 54 LGKSFLMRRHGWKIAFALDTGGISGSGG-----------QESLNGDGPDLGGTRLGRIVSAGGRQLLEKLNIARKNLPMK 122 (203)
Q Consensus 54 ~~~~~~~rr~~~~~~~~~~~~g~~~~~~-----------~~~~~~~~~~lQ~TRL~rli~~i~~rL~~~~~npWRR~Sl~ 122 (203)
...++..|+..|-..-+.-....+..++ .++||-. ..-.=.|..+-++|+.+. |-+++||.+|-.
T Consensus 49 ~~~~~~~~~r~w~l~VsaP~~~~~~~~e~~~~~~~~~~~~~~fdp~--apPPFtL~dIraAIPkHC--f~k~~~rS~sYv 124 (136)
T PF11960_consen 49 SPSSSGFRRRNWALNVSAPLRVPSVEEEEEEVSSNKEEEEEEFDPG--APPPFTLADIRAAIPKHC--FVKSPWRSMSYV 124 (136)
T ss_pred ccccccccccCcceeeeccCcccccccchhhccccccccccccCCC--CCCCcCHHHHHhhcChhh--cCCChHHHHHHH
Confidence 3455666778887776554433332222 2334332 223447999999999998 788999998865
Q ss_pred H
Q 038044 123 I 123 (203)
Q Consensus 123 l 123 (203)
+
T Consensus 125 ~ 125 (136)
T PF11960_consen 125 V 125 (136)
T ss_pred H
Confidence 4
No 28
>PF02674 Colicin_V: Colicin V production protein; InterPro: IPR003825 Colicin V is a small extracellular protein toxin which kills sensitive cells by disrupting their membrane potential []. Colicin V is produced from large low-copy plasmids and requires four plasmid genes for synthesis export and immunity [ 3034857). The cvaC gene is the structural gene for colicin V and cvaA and cvaB are required for processing and export of the toxin through the inner and outer membranes cvi confers immunity to the host cell. There are several stages at which host factors could play a role in colicin V production and mutations that alter any of these functions should result in lowered levels of extracellular colicin V ]. Colicin V production protein is required in Escherichia coli for colicin V production from plasmid pColV-K30 []. This entry represent the CvpA protein, which is involved in colicin V production. It is coded for by the cvpA gene, which is found upstream of the purF gene in the purF operon []. ; GO: 0009403 toxin biosynthetic process, 0016020 membrane
Probab=27.21 E-value=2.4e+02 Score=21.64 Aligned_cols=34 Identities=9% Similarity=0.015 Sum_probs=20.1
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 038044 108 LLEKLNIARKNLPMKIFLLLLGFYTANALATILGQ 142 (203)
Q Consensus 108 L~~~~~npWRR~Sl~lIsLL~GFflgna~sTi~Gq 142 (203)
+..+.++.+| --+.+++++.|++++..+.....+
T Consensus 14 ~~G~~rG~~~-~~~~l~~~i~a~~~a~~~~~~~~~ 47 (146)
T PF02674_consen 14 IKGYRRGFIR-ELFSLIGLIVALFVAFLFYPPLAP 47 (146)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555 345566777777777666655443
No 29
>PF12590 Acyl-thio_N: Acyl-ATP thioesterase; InterPro: IPR021113 This entry represents the N-terminal domain of acyl-ATP thioesterases from bacteria and eukaryotes. These proteins are typically between 120 and 131 amino acids in length. The plant acyl-acyl carrier protein (ACP) thioesterases (TEs) play an essential role in chain termination during de novo fatty acid synthesis [].; GO: 0016790 thiolester hydrolase activity
Probab=25.99 E-value=55 Score=27.12 Aligned_cols=21 Identities=29% Similarity=0.619 Sum_probs=17.2
Q ss_pred HhhhhccCchHHHHHHHHHHH
Q 038044 138 TILGQTGDWDVLVAGVVVAAI 158 (203)
Q Consensus 138 Ti~Gq~g~wD~l~A~iiVl~i 158 (203)
|++.|+-||..+.|+|..+|.
T Consensus 88 TFiNQLPDWSMLLAAITTIFl 108 (129)
T PF12590_consen 88 TFINQLPDWSMLLAAITTIFL 108 (129)
T ss_pred hHhhhCccHHHHHHHHHHHHH
Confidence 466799999999998887775
No 30
>PRK10404 hypothetical protein; Provisional
Probab=25.04 E-value=1.9e+02 Score=22.56 Aligned_cols=26 Identities=8% Similarity=-0.005 Sum_probs=16.8
Q ss_pred HHHHH-hhhhhhhhHHHHHHHHHHHHHHHH
Q 038044 108 LLEKL-NIARKNLPMKIFLLLLGFYTANAL 136 (203)
Q Consensus 108 L~~~~-~npWRR~Sl~lIsLL~GFflgna~ 136 (203)
..+++ .|||.-+- |...+||.+|-.+
T Consensus 72 td~yV~e~Pw~avG---iaagvGlllG~Ll 98 (101)
T PRK10404 72 ADDYVHEKPWQGIG---VGAAVGLVLGLLL 98 (101)
T ss_pred HHHHHHhCcHHHHH---HHHHHHHHHHHHH
Confidence 34455 57999544 5666788777654
No 31
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=23.68 E-value=3e+02 Score=20.21 Aligned_cols=45 Identities=16% Similarity=0.117 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHhhhhccCCC
Q 038044 120 PMKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGIGMLMYKKPP 170 (203)
Q Consensus 120 Sl~lIsLL~GFflgna~sTi~Gq~g~wD~l~A~iiVl~iEvis~l~Yr~~~ 170 (203)
...+++++.||+..+..-|...- .++.++.+++=+=+|=+|+++.
T Consensus 19 ~~~iisfi~Gy~~q~~~~~~~~~------~~g~~~~~lv~vP~Wp~y~r~p 63 (76)
T PF06645_consen 19 ISAIISFIVGYITQSFSYTFYIY------GAGVVLTLLVVVPPWPFYNRHP 63 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhheeCCcHhhcCCc
Confidence 34578888888888876665332 2333444444455666676643
No 32
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=23.48 E-value=6e+02 Score=26.88 Aligned_cols=39 Identities=13% Similarity=0.259 Sum_probs=29.0
Q ss_pred HhhhhccCCCCCCcchhhH---HHHHHHHHHHHHHHHHHHHh
Q 038044 161 IGMLMYKKPPSSTGRLQSF---VVMMNYWKAGVCLGLFVDAF 199 (203)
Q Consensus 161 is~l~Yr~~~~~~~~~~l~---~~lLN~fKIGllYGLFLEAF 199 (203)
.+.++|-|..+..++.... ..+=|.+|..++|.+|+=+|
T Consensus 516 ~~~Lyf~Rgfq~~Gpf~~MIykmI~~DL~RF~~IY~Vfl~GF 557 (782)
T KOG3676|consen 516 KNLLYFTRGFQLTGPFVIMIYKMIFGDLFRFLLIYLVFLVGF 557 (782)
T ss_pred HHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3448888887766766533 33448899999999999887
No 33
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=23.36 E-value=50 Score=24.97 Aligned_cols=10 Identities=30% Similarity=0.723 Sum_probs=7.5
Q ss_pred HHHHHHHHHH
Q 038044 187 KAGVCLGLFV 196 (203)
Q Consensus 187 KIGllYGLFL 196 (203)
-||++||+++
T Consensus 49 DIGILYGlVI 58 (75)
T COG4064 49 DIGILYGLVI 58 (75)
T ss_pred hHHHHHHHHH
Confidence 4788888765
No 34
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=23.32 E-value=2e+02 Score=24.97 Aligned_cols=53 Identities=11% Similarity=0.071 Sum_probs=29.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhh-------h-----ccCchHHHHHHHHHHHHHHhhhhccC
Q 038044 116 RKNLPMKIFLLLLGFYTANALATILG-------Q-----TGDWDVLVAGVVVAAIEGIGMLMYKK 168 (203)
Q Consensus 116 WRR~Sl~lIsLL~GFflgna~sTi~G-------q-----~g~wD~l~A~iiVl~iEvis~l~Yr~ 168 (203)
|--+-+..+.+.+||.+-...-.++- . ......++++.+-+++-.+.|++||+
T Consensus 184 W~lR~~G~llmf~G~~~~~~~l~~l~~~~P~lg~l~~~~~~~~~~~~s~~lsl~~Ia~aW~~yRP 248 (248)
T PF07787_consen 184 WILRFIGWLLMFIGFFLLFSPLYTLVDWIPLLGNLVGFGLFLVAFIISFSLSLLTIALAWLFYRP 248 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhceeechhhhHHHHHHHHHHHHHHHHHHHHhheeeCc
Confidence 33346667777778765443322211 1 11223455666677777888888874
No 35
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=23.10 E-value=2.3e+02 Score=24.15 Aligned_cols=54 Identities=17% Similarity=0.045 Sum_probs=32.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHhhhhccCC
Q 038044 115 ARKNLPMKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGIGMLMYKKP 169 (203)
Q Consensus 115 pWRR~Sl~lIsLL~GFflgna~sTi~Gq~g~wD~l~A~iiVl~iEvis~l~Yr~~ 169 (203)
+-+.-.+.=|+=|+||+++..++..++..-.|.++.+++..++-=++- -+|+|+
T Consensus 74 lL~sA~LvYi~PL~~l~v~~~La~~L~~~e~~~~~~~~lg~~l~fl~~-r~ysRk 127 (150)
T COG3086 74 LLKSALLVYIFPLVGLFLGAILAQYLFFSELIVIFGAFLGLALGFLLA-RRYSRK 127 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 344455666777999999999987666666665555544444333332 344443
No 36
>PF13150 DUF3989: Protein of unknown function (DUF3989)
Probab=22.74 E-value=3.1e+02 Score=20.84 Aligned_cols=19 Identities=11% Similarity=-0.062 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHhhhhhhhh
Q 038044 102 SAGGRQLLEKLNIARKNLP 120 (203)
Q Consensus 102 ~~i~~rL~~~~~npWRR~S 120 (203)
..+.+++..++++-|+++|
T Consensus 5 ~~~~~~~~~~Lr~~c~~Ls 23 (85)
T PF13150_consen 5 RKIKDRADDRLRRYCGRLS 23 (85)
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 3344444444444444443
No 37
>PRK13747 putative mercury resistance protein; Provisional
Probab=22.21 E-value=1.3e+02 Score=22.96 Aligned_cols=46 Identities=9% Similarity=0.195 Sum_probs=33.4
Q ss_pred hhhhhhhHHHHH---------HHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHHH
Q 038044 114 IARKNLPMKIFL---------LLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGI 161 (203)
Q Consensus 114 npWRR~Sl~lIs---------LL~GFflgna~sTi~Gq~g~wD~l~A~iiVl~iEvi 161 (203)
.||+-+-+.+.+ +|.+.+.|++.+.+++. .|++.+..+..+|.=-+
T Consensus 13 ~~~~~YlWg~lAvLTCPCHLpiLa~lLAGTa~Gafl~e--~w~iaal~lt~LFvlsl 67 (78)
T PRK13747 13 KPITGYLWGALAVLTCPCHLPILAAVLAGTTAGAFLGE--HWGIAALTLTGLFVLSV 67 (78)
T ss_pred CcchhhhhHHHHHhcCcchHHHHHHHHccchHHHHHHH--hHHHHHHHHHHHHHHHH
Confidence 666666665544 56788888888888766 88888887777776554
No 38
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=22.16 E-value=79 Score=30.79 Aligned_cols=75 Identities=24% Similarity=0.187 Sum_probs=49.1
Q ss_pred CCCCCCchhHHHHHH---HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhhh--ccCch-----HHHHHHHHHHH
Q 038044 89 GPDLGGTRLGRIVSA---GGRQLLEKLNIARKNLPMKIFLLLLGFYTANALATILGQ--TGDWD-----VLVAGVVVAAI 158 (203)
Q Consensus 89 ~~~lQ~TRL~rli~~---i~~rL~~~~~npWRR~Sl~lIsLL~GFflgna~sTi~Gq--~g~wD-----~l~A~iiVl~i 158 (203)
-+.+.++|+..+-+. -+++...-+..|=|-+++.+|.==+=-.++++++|+.+- .|++. +..++++++|.
T Consensus 26 l~a~nr~Rlr~la~~G~~~Akrv~kLL~k~drlig~iLIGNNLvNilasalaT~~~irl~Gd~GvaIAt~~mT~vilvFa 105 (423)
T COG4536 26 LTALNRYRLRHLAKQGNRGAKRVEKLLEKPDRLIGTILIGNNLVNILASALATILGIRLYGDAGVAIATGVLTFVILVFA 105 (423)
T ss_pred HhhccHHHHHHHHHccchhhHHHHHHhcCchheeeeeeecccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 355667788777653 455666677788887776655444445566667776653 45554 44557888999
Q ss_pred HHHhh
Q 038044 159 EGIGM 163 (203)
Q Consensus 159 Evis~ 163 (203)
|++=+
T Consensus 106 EVlPK 110 (423)
T COG4536 106 EVLPK 110 (423)
T ss_pred Hhcch
Confidence 99843
No 39
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=21.89 E-value=65 Score=22.98 Aligned_cols=15 Identities=40% Similarity=0.651 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHhhh
Q 038044 127 LLGFYTANALATILG 141 (203)
Q Consensus 127 L~GFflgna~sTi~G 141 (203)
+.||++|.++++.+|
T Consensus 2 ~~g~l~Ga~~Ga~~g 16 (74)
T PF12732_consen 2 LLGFLAGAAAGAAAG 16 (74)
T ss_pred HHHHHHHHHHHHHHH
Confidence 556666666655433
No 40
>PF05052 MerE: MerE protein; InterPro: IPR007746 The prokaryotic MerE (or URF-1) protein is part of the mercury resistance operon often located on plasmids or transposons [, ]. It has been suggested that MerE is a broad mercury transporter mediating transport across the bacterial membrane [].
Probab=21.81 E-value=1.2e+02 Score=23.10 Aligned_cols=34 Identities=15% Similarity=0.307 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHHH
Q 038044 126 LLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGI 161 (203)
Q Consensus 126 LL~GFflgna~sTi~Gq~g~wD~l~A~iiVl~iEvi 161 (203)
+|...+.|++.++++++ .|++.+..+..+|.=-+
T Consensus 34 il~~vLaGTaaGafl~e--~w~iaal~l~~LF~lsl 67 (75)
T PF05052_consen 34 ILAPVLAGTAAGAFLGE--HWVIAALTLTGLFVLSL 67 (75)
T ss_pred HHHHHHccchHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 44567888888888887 48888777776665433
No 41
>COG0818 DgkA Diacylglycerol kinase [Cell envelope biogenesis, outer membrane]
Probab=21.51 E-value=3.7e+02 Score=21.99 Aligned_cols=67 Identities=18% Similarity=0.193 Sum_probs=37.9
Q ss_pred CCchhHHHHHHHHHHHHHHHhh--h-hhhhhHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHhhhh
Q 038044 93 GGTRLGRIVSAGGRQLLEKLNI--A-RKNLPMKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGIGMLM 165 (203)
Q Consensus 93 Q~TRL~rli~~i~~rL~~~~~n--p-WRR~Sl~lIsLL~GFflgna~sTi~Gq~g~wD~l~A~iiVl~iEvis~l~ 165 (203)
+.||+-....-..+-+..-+++ . +...-+.++.+-+|||++-..-.. .=.+.+.++|+..|++|.-.
T Consensus 7 g~~rl~~a~~ys~~Gl~~a~~~E~afR~e~~~~~~~i~~~~~l~~~~~e~------lll~~si~lvl~vEllNTAI 76 (123)
T COG0818 7 GFRRLIKAFGYSLKGLKAAWKEEAAFRQELLAALVALVLAFFLGVSAIEW------LLLILSIFLVLIVELLNTAI 76 (123)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCcHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444432 2 333556677777888877653322 12356688889999997654
No 42
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=21.27 E-value=1.9e+02 Score=19.99 Aligned_cols=39 Identities=31% Similarity=0.250 Sum_probs=24.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHH
Q 038044 115 ARKNLPMKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAA 157 (203)
Q Consensus 115 pWRR~Sl~lIsLL~GFflgna~sTi~Gq~g~wD~l~A~iiVl~ 157 (203)
-|++..-.++..+.|+.+|-.+-+ .+-|..+..++++++
T Consensus 3 ~~~~~~~~iiG~~~G~ila~l~l~----~GF~~tl~i~~~~~i 41 (51)
T PF10031_consen 3 FWKNHRGKIIGGLIGLILALLILT----FGFWKTLFILLFAAI 41 (51)
T ss_pred HHHHCcchHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 355555667778888877776554 466766665555544
No 43
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=20.78 E-value=1.6e+02 Score=29.63 Aligned_cols=47 Identities=19% Similarity=0.175 Sum_probs=32.2
Q ss_pred ccCchHHHHHHHHHHHHHHhhhhccCCCCCCcchhhHHHHHHHHHHHHHHHHH
Q 038044 143 TGDWDVLVAGVVVAAIEGIGMLMYKKPPSSTGRLQSFVVMMNYWKAGVCLGLF 195 (203)
Q Consensus 143 ~g~wD~l~A~iiVl~iEvis~l~Yr~~~~~~~~~~l~~~lLN~fKIGllYGLF 195 (203)
.|-+||++.++++-++|++..- ...-.+.....++..+-.|++.|+-
T Consensus 157 SGtNDPmAvfLTitlieli~~g------et~l~~~~ll~f~~q~glG~l~G~~ 203 (574)
T COG3263 157 SGSNDPMAVFLTITLIELIAGG------ETNLSWGFLLGFLQQFGLGLLLGLG 203 (574)
T ss_pred cCCCCceeeehhHHHHHHHhcc------ccccCHHHHHHHHHHhhHHHHHHHH
Confidence 5689999999999999998221 0001222345567888888888864
No 44
>PF03739 YjgP_YjgQ: Predicted permease YjgP/YjgQ family; InterPro: IPR005495 Members of this family are predicted integral membrane proteins of unknown function. They are about 350 amino acids long, contain about 6 transmembrane regions and may be permeases, although there is no verification of this.; GO: 0016021 integral to membrane
Probab=20.42 E-value=3.2e+02 Score=23.98 Aligned_cols=20 Identities=20% Similarity=0.360 Sum_probs=7.8
Q ss_pred HHHHHHHhhhhccCchHHHH
Q 038044 132 TANALATILGQTGDWDVLVA 151 (203)
Q Consensus 132 lgna~sTi~Gq~g~wD~l~A 151 (203)
....++...|..+.++|+.|
T Consensus 317 ~~~~~~~~l~~~~~l~p~~a 336 (354)
T PF03739_consen 317 ILFSFFSSLGENGNLPPFIA 336 (354)
T ss_pred HHHHHHHHHHHcCCccHHHH
Confidence 33333333334444444333
No 45
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=20.10 E-value=1.7e+02 Score=24.64 Aligned_cols=26 Identities=19% Similarity=0.432 Sum_probs=14.5
Q ss_pred hhhhHHHHHHHHHHHHH-HHHHHhhhh
Q 038044 117 KNLPMKIFLLLLGFYTA-NALATILGQ 142 (203)
Q Consensus 117 RR~Sl~lIsLL~GFflg-na~sTi~Gq 142 (203)
.+..+..++++.-+|+- +.++.++|.
T Consensus 230 ~n~~m~~LT~~t~iflPlt~i~g~fGM 256 (292)
T PF01544_consen 230 QNRVMKVLTIVTAIFLPLTFITGIFGM 256 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 33445555555555555 666666664
Done!