Query 038044
Match_columns 203
No_of_seqs 115 out of 136
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 11:37:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038044.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038044hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2iub_A CORA, divalent cation t 35.7 73 0.0025 27.6 6.3 39 100-138 287-325 (363)
2 4ev6_A Magnesium transport pro 30.8 1.2E+02 0.0043 25.8 6.9 15 108-122 271-285 (339)
3 2zy9_A Mg2+ transporter MGTE; 26.4 2E+02 0.0069 25.9 7.7 78 116-197 306-394 (473)
4 2kdc_A Diacylglycerol kinase; 19.3 3.1E+02 0.01 20.9 6.6 67 93-166 3-76 (121)
5 2xf7_A GP23.1; viral protein; 14.4 48 0.0016 22.3 0.6 13 190-202 5-17 (51)
6 2a65_A Leutaa, Na(+):neurotran 11.1 2.6E+02 0.009 26.0 4.7 58 101-161 360-421 (519)
7 2l2t_A Receptor tyrosine-prote 10.5 2.8E+02 0.0096 17.9 3.4 15 157-171 25-39 (44)
8 2ks1_B Epidermal growth factor 10.4 3E+02 0.01 17.7 3.5 20 152-171 21-40 (44)
9 4a1s_C RE60102P, INSC; cell cy 9.7 87 0.003 20.1 0.6 11 29-39 15-25 (40)
10 1yew_B Particulate methane mon 8.6 7.3E+02 0.025 21.5 6.3 57 113-169 15-86 (247)
No 1
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=35.68 E-value=73 Score=27.60 Aligned_cols=39 Identities=13% Similarity=0.057 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 038044 100 IVSAGGRQLLEKLNIARKNLPMKIFLLLLGFYTANALAT 138 (203)
Q Consensus 100 li~~i~~rL~~~~~npWRR~Sl~lIsLL~GFflgna~sT 138 (203)
+.+.....+....++-=|.+++....++--=++++.+|+
T Consensus 287 l~d~~~s~is~~~N~imk~LTiit~IflP~T~IaGiyGM 325 (363)
T 2iub_A 287 LLDVYLSSVSNKTNEVMKVLTIIATIFMPLTFIAGIYGM 325 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 333333344444444444444444333333333333333
No 2
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=30.84 E-value=1.2e+02 Score=25.81 Aligned_cols=15 Identities=33% Similarity=0.091 Sum_probs=6.1
Q ss_pred HHHHHhhhhhhhhHH
Q 038044 108 LLEKLNIARKNLPMK 122 (203)
Q Consensus 108 L~~~~~npWRR~Sl~ 122 (203)
+....++-=|.+++.
T Consensus 271 is~~~N~~mk~LTii 285 (339)
T 4ev6_A 271 ENIKMNQIMKILTMV 285 (339)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334444444443
No 3
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=26.35 E-value=2e+02 Score=25.87 Aligned_cols=78 Identities=19% Similarity=0.109 Sum_probs=41.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHH-----------HHHHHHHHhhhhccCCCCCCcchhhHHHHHH
Q 038044 116 RKNLPMKIFLLLLGFYTANALATILGQTGDWDVLVAGV-----------VVAAIEGIGMLMYKKPPSSTGRLQSFVVMMN 184 (203)
Q Consensus 116 WRR~Sl~lIsLL~GFflgna~sTi~Gq~g~wD~l~A~i-----------iVl~iEvis~l~Yr~~~~~~~~~~l~~~lLN 184 (203)
.+|.+++++.++.+++.++.++.+-......-.++.++ .....-++-.+.. ... .....+..+..
T Consensus 306 ~~R~~wl~~~~~~~~l~~~vi~~fe~~l~~~~~l~~~~P~v~~~gGn~Gtq~~t~~ir~la~-~~~---~~~~~~~~~~k 381 (473)
T 2zy9_A 306 LARVRWLVILILTGMVTSSILQGFESVLEAVTALAFYVPVLLGTGGNTGNQSATLIIRALAT-RDL---DLRDWRRVFLK 381 (473)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHCSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHT-TSS---CGGGHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhc-CCC---CHHHHHHHHHH
Confidence 56788888888888888887775543332221111111 1111111111111 111 11223566788
Q ss_pred HHHHHHHHHHHHH
Q 038044 185 YWKAGVCLGLFVD 197 (203)
Q Consensus 185 ~fKIGllYGLFLE 197 (203)
.+++|++.|+.+-
T Consensus 382 e~~~~~~~g~~~~ 394 (473)
T 2zy9_A 382 EMGVGLLLGLTLS 394 (473)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8899988887754
No 4
>2kdc_A Diacylglycerol kinase; membrane protein, solution kinase, DAGK, cell inner membrane, cell membrane, membrane, phospholipid biosynthesis; NMR {Escherichia coli}
Probab=19.27 E-value=3.1e+02 Score=20.88 Aligned_cols=67 Identities=13% Similarity=0.102 Sum_probs=37.4
Q ss_pred CCchhHHHHHHHHHHHH---HHHhh---hhhhhhHHHHHHHHHHHHHHHHHHhhhhccCchHH-HHHHHHHHHHHHhhhh
Q 038044 93 GGTRLGRIVSAGGRQLL---EKLNI---ARKNLPMKIFLLLLGFYTANALATILGQTGDWDVL-VAGVVVAAIEGIGMLM 165 (203)
Q Consensus 93 Q~TRL~rli~~i~~rL~---~~~~n---pWRR~Sl~lIsLL~GFflgna~sTi~Gq~g~wD~l-~A~iiVl~iEvis~l~ 165 (203)
++|.+.++++...--++ .-+++ -+-.+-+.++.+.+||+++-. ..+|-.+ .+..+|+..|++|--.
T Consensus 3 ~~~g~~r~~~s~~yA~~Gl~~a~~~E~~fr~~~~~~~~~i~~~~~l~~s-------~~e~~~li~~i~lVl~~EllNTAI 75 (121)
T 2kdc_A 3 NTTGFTRIIKAAGYSWKGLRAAWINEAAFRQEGVAVLLAVVIACWLDVD-------AITRVLLISSVMLVMIVEILNSAI 75 (121)
T ss_dssp CCSSHHHHHHHHHTHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHCCCC-------CSHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhCC-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666665544433 33421 233355556666667666532 3355443 4467889999998654
Q ss_pred c
Q 038044 166 Y 166 (203)
Q Consensus 166 Y 166 (203)
=
T Consensus 76 E 76 (121)
T 2kdc_A 76 E 76 (121)
T ss_dssp H
T ss_pred H
Confidence 3
No 5
>2xf7_A GP23.1; viral protein; 1.61A {Bacillus phage SPP1} PDB: 2xf5_A 2xf6_A
Probab=14.40 E-value=48 Score=22.28 Aligned_cols=13 Identities=31% Similarity=0.657 Sum_probs=10.1
Q ss_pred HHHHHHHHHhccC
Q 038044 190 VCLGLFVDAFKLG 202 (203)
Q Consensus 190 llYGLFLEAFKLG 202 (203)
++||+|+|..|=|
T Consensus 5 ~L~G~F~D~W~~G 17 (51)
T 2xf7_A 5 LLYGYFLDSWLDG 17 (51)
T ss_dssp TTHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcc
Confidence 5788888887755
No 6
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=11.12 E-value=2.6e+02 Score=26.01 Aligned_cols=58 Identities=14% Similarity=0.099 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhh-hhccCchHHHH---HHHHHHHHHH
Q 038044 101 VSAGGRQLLEKLNIARKNLPMKIFLLLLGFYTANALATIL-GQTGDWDVLVA---GVVVAAIEGI 161 (203)
Q Consensus 101 i~~i~~rL~~~~~npWRR~Sl~lIsLL~GFflgna~sTi~-Gq~g~wD~l~A---~iiVl~iEvi 161 (203)
++.+.+-+.+.+ +|+|....++..+.+|.+|-..+|-. | ...+|-+++ +.++.+.|.+
T Consensus 360 ~E~~vt~l~D~~--~~~R~~~~~~v~~~~fllgl~~~~~~~g-~~~~D~~~~~~~l~~~~l~~~i 421 (519)
T 2a65_A 360 MQPMIAFLEDEL--KLSRKHAVLWTAAIVFFSAHLVMFLNKS-LDEMDFWAGTIGVVFFGLTELI 421 (519)
T ss_dssp HHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHBTTH-HHHHHHHTTTHHHHHHHHHHHH
T ss_pred hhHhHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHcCCCC-cchHHHHHhHHHHHHHHHHHHH
Confidence 444444454444 45666666667777888887776665 5 444565544 5556666765
No 7
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=10.50 E-value=2.8e+02 Score=17.90 Aligned_cols=15 Identities=0% Similarity=-0.119 Sum_probs=6.9
Q ss_pred HHHHHhhhhccCCCC
Q 038044 157 AIEGIGMLMYKKPPS 171 (203)
Q Consensus 157 ~iEvis~l~Yr~~~~ 171 (203)
++=+..+++.|++..
T Consensus 25 ii~~~~~~~~RRRr~ 39 (44)
T 2l2t_A 25 IVGLTFAVYVRRKSI 39 (44)
T ss_dssp HHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhhhhhh
Confidence 333444455555443
No 8
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=10.39 E-value=3e+02 Score=17.67 Aligned_cols=20 Identities=5% Similarity=-0.112 Sum_probs=8.9
Q ss_pred HHHHHHHHHHhhhhccCCCC
Q 038044 152 GVVVAAIEGIGMLMYKKPPS 171 (203)
Q Consensus 152 ~iiVl~iEvis~l~Yr~~~~ 171 (203)
+++++++=+..+++.|++..
T Consensus 21 v~~~~ii~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 21 LLLLLVVALGIGLFMRRRHI 40 (44)
T ss_dssp HHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHhhhhHh
Confidence 33333333444455555443
No 9
>4a1s_C RE60102P, INSC; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=9.66 E-value=87 Score=20.14 Aligned_cols=11 Identities=36% Similarity=0.999 Sum_probs=8.6
Q ss_pred hcccccCCCCC
Q 038044 29 ANQKWKNEPST 39 (203)
Q Consensus 29 ~~~~~~~~~~~ 39 (203)
+-|.|+|||.-
T Consensus 15 seQRW~~e~EV 25 (40)
T 4a1s_C 15 SEQRWAGEPEV 25 (40)
T ss_dssp HHHTTCCCCCC
T ss_pred HhccccCChhH
Confidence 45889999964
No 10
>1yew_B Particulate methane monooxygenase, A subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_B
Probab=8.65 E-value=7.3e+02 Score=21.47 Aligned_cols=57 Identities=16% Similarity=0.228 Sum_probs=35.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhhhhccCch---------------HHHHHHHHHHHHHHhhhhccCC
Q 038044 113 NIARKNLPMKIFLLLLGFYTANALATILGQTGDWD---------------VLVAGVVVAAIEGIGMLMYKKP 169 (203)
Q Consensus 113 ~npWRR~Sl~lIsLL~GFflgna~sTi~Gq~g~wD---------------~l~A~iiVl~iEvis~l~Yr~~ 169 (203)
..--|++...++.+++--++|+.-.....-.+||| |++....-+.++..-+..||-|
T Consensus 15 ~~~~r~~d~~~~~~~~~~~~g~~h~h~ml~~gDWDFW~DWKDRr~W~tv~PI~~itfpaAvQ~~~W~~~RlP 86 (247)
T 1yew_B 15 VQVSRTIDWMALFVVFFVIVGSYHIHAMLTMGDWDFWSDWKDRRLWVTVTPIVLVTFPAAVQSYLWERYRLP 86 (247)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCSSSCGGGCCTTHHHHHHHHHHSHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhHhhhccCCccccccCcCceeeecccEEEEEehHHHHHHHHHHhcCC
Confidence 34456677777777777777777666666678887 3444444445555555555554
Done!