BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038045
(621 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XRJ|A Chain A, Rapid Structure Determination Of Human Uridine-Cytidine
Kinase 2 Using A Conventional Laboratory X-Ray Source
And A Single Samarium Derivative
pdb|1XRJ|B Chain B, Rapid Structure Determination Of Human Uridine-Cytidine
Kinase 2 Using A Conventional Laboratory X-Ray Source
And A Single Samarium Derivative
Length = 261
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 20/163 (12%)
Query: 60 QKNDG-IILIGLAGPSGAGKTIFTEKILNFM---------PSIAVISMDNY------NDS 103
Q N G LIG++G + +GK+ KI+ + + ++S D++
Sbjct: 14 QPNGGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQK 73
Query: 104 SRVVDG--NFDDPRLTDYDTLLENVRDLREGKPVQVPIYDFESSSRTGYRTVEVPSSRIV 161
++ + G NFD P D + +L+ ++++ EGK VQ+P+YDF S SR TV V + +V
Sbjct: 74 AKALKGQFNFDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRK-EETVTVYPADVV 132
Query: 162 IIEGIYAL-SEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVG 203
+ EGI A S+++R L +++ V L +RVLRDI G
Sbjct: 133 LFEGILAFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISERG 175
>pdb|1UDW|A Chain A, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With A Feedback-inhibitor, Ctp
pdb|1UDW|B Chain B, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With A Feedback-inhibitor, Ctp
pdb|1UEI|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Feedback-Inhibitor, Utp
pdb|1UEI|B Chain B, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Feedback-Inhibitor, Utp
pdb|1UEJ|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Substrate, Cytidine
pdb|1UEJ|B Chain B, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Substrate, Cytidine
pdb|1UFQ|A Chain A, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UFQ|B Chain B, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UFQ|C Chain C, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UFQ|D Chain D, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UJ2|A Chain A, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With Products, Cmp And Adp
pdb|1UJ2|B Chain B, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With Products, Cmp And Adp
Length = 252
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 83/156 (53%), Gaps = 19/156 (12%)
Query: 66 ILIGLAGPSGAGKTIFTEKILNFM---------PSIAVISMDNY------NDSSRVVDG- 109
LIG++G + +GK+ KI+ + + ++S D++ ++ + G
Sbjct: 23 FLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQ 82
Query: 110 -NFDDPRLTDYDTLLENVRDLREGKPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYA 168
NFD P D + +L+ ++++ EGK VQ+P+YDF S SR TV V + +V+ EGI A
Sbjct: 83 FNFDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRK-EETVTVYPADVVLFEGILA 141
Query: 169 L-SEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVG 203
S+++R L +++ V L +RVLRDI G
Sbjct: 142 FYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISERG 177
>pdb|2JEO|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 1
pdb|2UVQ|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 1 In
Complex With Adp
Length = 245
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 80/154 (51%), Gaps = 19/154 (12%)
Query: 66 ILIGLAGPSGAGKTIFTEKILNFMPS---------IAVISMDNY------NDSSRVVDG- 109
LIG++G + +GK+ EKI+ + + ++S D + ++ + G
Sbjct: 26 FLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQ 85
Query: 110 -NFDDPRLTDYDTLLENVRDLREGKPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYA 168
NFD P D D + ++++ EGK V+VP YDF + SR TV P+ +V+ EGI
Sbjct: 86 YNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPETTVVYPAD-VVLFEGILV 144
Query: 169 L-SEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQR 201
S+++R + LR+ V L +RVLRD++R
Sbjct: 145 FYSQEIRDMFHLRLFVDTDSDVRLSRRVLRDVRR 178
>pdb|3ASY|A Chain A, Ligand-Free Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
pdb|3ASY|B Chain B, Ligand-Free Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
pdb|3ASZ|A Chain A, Cmp-Complex Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
pdb|3ASZ|B Chain B, Cmp-Complex Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
Length = 211
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 79/149 (53%), Gaps = 15/149 (10%)
Query: 66 ILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNY---------NDSSRVVDGNFDDPR 115
+IG+AG + +GKT + + + +A++ MD+Y + RV N+D P
Sbjct: 7 FVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYYKDLGHLPLEERLRV---NYDHPD 63
Query: 116 LTDYDTLLENVRDLREGKPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEK-LR 174
D LE+ + L G PV++P+YDF + +R+ RT P+ +VI+EGI L K LR
Sbjct: 64 AFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAP-VVILEGILVLYPKELR 122
Query: 175 PLLDLRVSVTGGVHFDLVKRVLRDIQRVG 203
L+DL+V V ++R+ RD+ G
Sbjct: 123 DLMDLKVFVDADADERFIRRLKRDVLERG 151
>pdb|1RZ3|A Chain A, Structure Of A Possible Uridine Kinase From Bacillus
Stearothermophilus
Length = 201
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 65/136 (47%), Gaps = 12/136 (8%)
Query: 57 LLAQKNDGIILIGLAGPSGAGKTIFTEKILNFMP----SIAVISMDNY--NDSSRVVDGN 110
+LA K G +++G+ G S +GKT ++ + S+ V D++ + R GN
Sbjct: 14 ILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHXDDHIVERAKRYHTGN 73
Query: 111 ---FDDPRLT-DYDTLLENV-RDLREGKPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEG 165
F+ L D + L + R L+ + +P YD E+ + + RTV + S + IEG
Sbjct: 74 EEWFEYYYLQWDVEWLTHQLFRQLKASHQLTLPFYDHETDTHSK-RTVYLSDSDXIXIEG 132
Query: 166 IYALSEKLRPLLDLRV 181
++ ++ RP D V
Sbjct: 133 VFLQRKEWRPFFDFVV 148
>pdb|1M4J|A Chain A, Crystal Structure Of The N-Terminal Adf-H Domain Of Mouse
Twinfilin Isoform-1
pdb|1M4J|B Chain B, Crystal Structure Of The N-Terminal Adf-H Domain Of Mouse
Twinfilin Isoform-1
Length = 142
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 235 TETMEQTYDIYLLPPGEDPESCQSYLRMRNKDGK-YSLMFEEWVTD 279
+++ EQ YD ++LP ED + C R+ +++ + Y +F W D
Sbjct: 46 SDSWEQDYDSFVLPLLEDKQPCYVLFRLDSQNAQGYEWIFIAWSPD 91
>pdb|2W4A|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4G|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
pdb|2W4H|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
Length = 840
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 57 LLAQKNDGIILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNYNDSSRVVDGNFDDPRL 116
+L + + ILI G SGAGKT+ T++++ + +IA + S + G +D ++
Sbjct: 163 MLTDRENQSILI--TGESGAGKTVNTKRVIQYFATIAASGEKKKEEQSGKMQGTLED-QI 219
Query: 117 TDYDTLLE---NVRDLR 130
+ LLE N + +R
Sbjct: 220 ISANPLLEAFGNAKTVR 236
>pdb|2P0E|A Chain A, Human Nicotinamide Riboside Kinase 1 In Complex With
Tiazofurin
pdb|2QSY|A Chain A, Human Nicotinamide Riboside Kinase 1 In Complex With Adp
pdb|2QSZ|A Chain A, Human Nicotinamide Riboside Kinase 1 In Complex With
Nicotinamide Mononucleotide
pdb|2QT0|A Chain A, Human Nicotinamide Riboside Kinase 1 In Complex With
Nicotinamide Riboside And An Atp Analogue
pdb|2QT1|A Chain A, Human Nicotinamide Riboside Kinase 1 In Complex With
Nicotinamide Riboside
Length = 207
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 25/43 (58%)
Query: 58 LAQKNDGIILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNY 100
L + +IG++G + +GKT + + +P+ +VIS D++
Sbjct: 14 LVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDF 56
>pdb|2QG6|A Chain A, Crystal Structure Of Human Nicotinamide Riboside Kinase
(Nrk1) In Complex With Nicotinamide Mononucleotide (Nmn)
pdb|2QL6|A Chain A, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|B Chain B, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|C Chain C, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|D Chain D, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|E Chain E, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|F Chain F, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|G Chain G, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|H Chain H, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|I Chain I, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|J Chain J, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|K Chain K, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|L Chain L, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|M Chain M, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|N Chain N, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|O Chain O, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|P Chain P, Human Nicotinamide Riboside Kinase (Nrk1)
Length = 199
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 23/35 (65%)
Query: 66 ILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNY 100
+IG++G + +GKT + + +P+ +VIS D++
Sbjct: 4 FIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDF 38
>pdb|1KOB|A Chain A, Twitchin Kinase Fragment (Aplysia), Autoregulated Protein
Kinase Domain
pdb|1KOB|B Chain B, Twitchin Kinase Fragment (Aplysia), Autoregulated Protein
Kinase Domain
Length = 387
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 11/71 (15%)
Query: 107 VDGNFDDPRLTDYDTLLENVRDLREGKPVQVP---IYDFE------SSSRTG--YRTVEV 155
V G +D P++ DYD E++ +PV+V +YD+ S G +R VE
Sbjct: 14 VRGKYDGPKINDYDKFYEDIWKKYVPQPVEVKQGSVYDYYDILEELGSGAFGVVHRCVEK 73
Query: 156 PSSRIVIIEGI 166
+ R+ + + I
Sbjct: 74 ATGRVFVAKFI 84
>pdb|2MYS|A Chain A, Myosin Subfragment-1, Alpha Carbon Coordinates Only For
The Two Light Chains
Length = 843
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 57 LLAQKNDGIILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNYNDSSRVVDGNFDDPRL 116
+L + + ILI G SGAGKT+ T +++ + +IA + S + G +D ++
Sbjct: 166 MLTDRENQSILI--TGESGAGKTVNTXRVIQYFATIAASGEKKKEEQSGKMQGTLED-QI 222
Query: 117 TDYDTLLE 124
+ LLE
Sbjct: 223 ISANPLLE 230
>pdb|1M8Q|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|S Chain S, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
Length = 840
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 57 LLAQKNDGIILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNYNDSSRVVDGNFDDPRL 116
+L + + ILI G SGAGKT+ T +++ + +IA + S + G +D ++
Sbjct: 163 MLTDRENQSILI--TGESGAGKTVNTXRVIQYFATIAASGEKKKEEQSGKMQGTLED-QI 219
Query: 117 TDYDTLLE 124
+ LLE
Sbjct: 220 ISANPLLE 227
>pdb|4DB1|A Chain A, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
pdb|4DB1|B Chain B, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
Length = 783
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 57 LLAQKNDGIILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNYNDSS 104
+L + + ILI G SGAGKT+ T++++ + IA I + D S
Sbjct: 165 MLTDRENQSILI--TGESGAGKTVNTKRVIQYFAVIAAIGDRSKKDQS 210
>pdb|1G6I|A Chain A, Crystal Structure Of The Yeast Alpha-1,2-Mannosidase With
Bound 1- Deoxymannojirimycin At 1.59 A Resolution
Length = 545
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 26/120 (21%)
Query: 218 AKNLSVDQIKAVYPEGHTETMEQT--YDIYL--------LPPGEDP------ESCQSYLR 261
A + D+I++++ E + + YD+Y +P G P +S + +
Sbjct: 35 AGEMDRDRIESMFLESWRDYSKHGWGYDVYGPIEHTSHNMPRGNQPLGWIIVDSVDTLML 94
Query: 262 MRNKDGKYSLMFE-------EWVTDI-PFVISPRIT-FEVSVRLLGGLMALGYTIATILK 312
M N Y FE W+ D+ F I + FE ++R+LGGL++ Y ++ +L+
Sbjct: 95 MYNSSTLYKSEFEAEIQRSEHWINDVLDFDIDAEVNVFETTIRMLGGLLS-AYHLSDVLE 153
>pdb|1DL2|A Chain A, Crystal Structure Of Class I Alpha-1,2-Mannosidase From
Saccharomyces Cerevisiae At 1.54 Angstrom Resolution
Length = 511
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 26/114 (22%)
Query: 224 DQIKAVYPEGHTETMEQT--YDIYL--------LPPGEDP------ESCQSYLRMRNKDG 267
D+I++++ E + + YD+Y +P G P +S + + M N
Sbjct: 7 DRIESMFLESWRDYSKHGWGYDVYGPIEHTSHNMPRGNQPLGWIIVDSVDTLMLMYNSST 66
Query: 268 KYSLMFE-------EWVTDI-PFVISPRIT-FEVSVRLLGGLMALGYTIATILK 312
Y FE W+ D+ F I + FE ++R+LGGL++ Y ++ +L+
Sbjct: 67 LYKSEFEAEIQRSEHWINDVLDFDIDAEVNVFETTIRMLGGLLS-AYHLSDVLE 119
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 17/103 (16%)
Query: 67 LIGLAGPSGAGKTIFTEKILNF-MPSIAVISMDNY-------NDSSRVVDGNFDDPRLTD 118
+IG+ G SG+GK+ T+ I F +P + +D + N R V D L +
Sbjct: 33 VIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN 92
Query: 119 YDTLLENVRDLREGKPVQVPIY--------DFESSSRTGYRTV 153
++++N+ G V+ IY DF S R GY T+
Sbjct: 93 -RSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTI 134
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 17/103 (16%)
Query: 67 LIGLAGPSGAGKTIFTEKILNF-MPSIAVISMDNY-------NDSSRVVDGNFDDPRLTD 118
+IG+ G SG+GK+ T+ I F +P + +D + N R V D L +
Sbjct: 37 VIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN 96
Query: 119 YDTLLENVRDLREGKPVQVPIY--------DFESSSRTGYRTV 153
++++N+ G V+ IY DF S R GY T+
Sbjct: 97 -RSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTI 138
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 17/103 (16%)
Query: 67 LIGLAGPSGAGKTIFTEKILNF-MPSIAVISMDNY-------NDSSRVVDGNFDDPRLTD 118
+IG+ G SG+GK+ T+ I F +P + +D + N R V D L +
Sbjct: 31 VIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN 90
Query: 119 YDTLLENVRDLREGKPVQVPIY--------DFESSSRTGYRTV 153
++++N+ G V+ IY DF S R GY T+
Sbjct: 91 -RSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTI 132
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 17/103 (16%)
Query: 67 LIGLAGPSGAGKTIFTEKILNF-MPSIAVISMDNY-------NDSSRVVDGNFDDPRLTD 118
+IG+ G SG+GK+ T+ I F +P + +D + N R V D L +
Sbjct: 31 VIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN 90
Query: 119 YDTLLENVRDLREGKPVQVPIY--------DFESSSRTGYRTV 153
++++N+ G V+ IY DF S R GY T+
Sbjct: 91 -RSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTI 132
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 17/103 (16%)
Query: 67 LIGLAGPSGAGKTIFTEKILNF-MPSIAVISMDNY-------NDSSRVVDGNFDDPRLTD 118
+IG+ G SG+GK+ T+ I F +P + +D + N R V D L +
Sbjct: 37 VIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN 96
Query: 119 YDTLLENVRDLREGKPVQVPIY--------DFESSSRTGYRTV 153
++++N+ G V+ IY DF S R GY T+
Sbjct: 97 -RSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTI 138
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 17/103 (16%)
Query: 67 LIGLAGPSGAGKTIFTEKILNF-MPSIAVISMDNY-------NDSSRVVDGNFDDPRLTD 118
+IG+ G SG+GK+ T+ I F +P + +D + N R V D L +
Sbjct: 37 VIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN 96
Query: 119 YDTLLENVRDLREGKPVQVPIY--------DFESSSRTGYRTV 153
++++N+ G V+ IY DF S R GY T+
Sbjct: 97 -RSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTI 138
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,657,240
Number of Sequences: 62578
Number of extensions: 653597
Number of successful extensions: 1914
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1888
Number of HSP's gapped (non-prelim): 35
length of query: 621
length of database: 14,973,337
effective HSP length: 105
effective length of query: 516
effective length of database: 8,402,647
effective search space: 4335765852
effective search space used: 4335765852
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)