Query 038045
Match_columns 621
No_of_seqs 409 out of 3077
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 07:00:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038045.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038045hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02318 phosphoribulokinase/u 100.0 4E-157 9E-162 1292.1 38.5 612 1-619 1-655 (656)
2 COG3839 MalK ABC-type sugar tr 100.0 6.2E-37 1.3E-41 323.0 9.5 206 37-255 4-232 (338)
3 COG3842 PotA ABC-type spermidi 100.0 1.9E-36 4.1E-41 320.8 10.6 275 38-337 7-308 (352)
4 COG1135 AbcC ABC-type metal io 100.0 9E-34 2E-38 292.7 6.5 242 48-302 18-299 (339)
5 COG1118 CysA ABC-type sulfate/ 100.0 8.8E-33 1.9E-37 285.0 8.5 204 38-254 4-235 (345)
6 COG1126 GlnQ ABC-type polar am 100.0 3.3E-32 7.1E-37 269.8 8.2 200 38-251 4-230 (240)
7 COG1125 OpuBA ABC-type proline 100.0 2.2E-32 4.7E-37 276.2 4.8 205 38-255 3-234 (309)
8 COG1116 TauB ABC-type nitrate/ 100.0 5.5E-30 1.2E-34 258.8 8.4 184 37-233 4-207 (248)
9 PRK11650 ugpC glycerol-3-phosp 99.9 4.3E-28 9.3E-33 258.7 10.8 203 38-253 5-231 (356)
10 COG1124 DppF ABC-type dipeptid 99.9 4.5E-28 9.8E-33 243.9 8.1 198 37-247 4-232 (252)
11 PRK11432 fbpC ferric transport 99.9 4.1E-28 8.8E-33 258.5 7.9 205 37-254 7-234 (351)
12 TIGR03265 PhnT2 putative 2-ami 99.9 5.9E-28 1.3E-32 257.4 8.3 204 37-253 5-231 (353)
13 COG1127 Ttg2A ABC-type transpo 99.9 6.4E-28 1.4E-32 242.4 6.4 198 35-245 7-234 (263)
14 PRK09452 potA putrescine/sperm 99.9 8.1E-28 1.8E-32 258.3 7.5 205 37-254 15-242 (375)
15 COG1117 PstB ABC-type phosphat 99.9 1.6E-27 3.4E-32 236.2 6.8 202 36-253 7-244 (253)
16 PRK11607 potG putrescine trans 99.9 2.5E-27 5.5E-32 254.6 8.2 204 37-253 20-246 (377)
17 TIGR03258 PhnT 2-aminoethylpho 99.9 3.8E-27 8.2E-32 252.0 7.7 202 38-252 7-234 (362)
18 COG0572 Udk Uridine kinase [Nu 99.9 4E-26 8.7E-31 227.8 13.6 181 63-255 6-195 (218)
19 TIGR02314 ABC_MetN D-methionin 99.9 3E-27 6.6E-32 251.2 5.4 249 39-301 4-301 (343)
20 COG1120 FepC ABC-type cobalami 99.9 9.1E-27 2E-31 238.1 7.9 195 37-244 3-226 (258)
21 COG4175 ProV ABC-type proline/ 99.9 5.8E-27 1.3E-31 242.7 4.2 197 46-255 38-263 (386)
22 PRK10851 sulfate/thiosulfate t 99.9 1.7E-26 3.7E-31 246.2 7.8 204 37-253 3-233 (353)
23 COG1136 SalX ABC-type antimicr 99.9 3.7E-26 8.1E-31 229.6 8.0 172 49-234 18-219 (226)
24 PRK11000 maltose/maltodextrin 99.9 3.9E-26 8.3E-31 244.7 7.3 203 38-253 5-230 (369)
25 COG1122 CbiO ABC-type cobalt t 99.9 1.6E-25 3.4E-30 226.9 9.6 195 37-245 4-227 (235)
26 PRK13537 nodulation ABC transp 99.9 2.1E-25 4.6E-30 233.1 8.5 194 37-244 8-225 (306)
27 COG3638 ABC-type phosphate/pho 99.9 3.5E-25 7.5E-30 222.2 8.8 192 37-241 4-232 (258)
28 TIGR01186 proV glycine betaine 99.9 2E-25 4.3E-30 238.9 6.4 194 46-252 3-225 (363)
29 COG2884 FtsE Predicted ATPase 99.9 2.9E-25 6.2E-30 216.8 5.9 182 40-235 5-215 (223)
30 COG1131 CcmA ABC-type multidru 99.9 1.1E-24 2.4E-29 226.9 9.0 193 38-244 6-224 (293)
31 COG1123 ATPase components of v 99.9 6.2E-25 1.3E-29 242.8 7.0 194 47-253 302-526 (539)
32 COG4598 HisP ABC-type histidin 99.9 2.8E-25 6.1E-30 215.5 3.3 201 37-251 7-246 (256)
33 cd03261 ABC_Org_Solvent_Resist 99.9 1.7E-24 3.7E-29 216.3 8.8 192 39-244 3-224 (235)
34 PRK13536 nodulation factor exp 99.9 1.4E-24 3.1E-29 230.4 8.1 194 37-244 42-259 (340)
35 cd03265 ABC_DrrA DrrA is the A 99.9 2.8E-24 6.1E-29 212.7 8.9 188 39-240 3-215 (220)
36 TIGR01288 nodI ATP-binding ABC 99.9 2.3E-24 5.1E-29 224.4 8.3 194 37-244 5-222 (303)
37 TIGR00960 3a0501s02 Type II (G 99.9 2.8E-24 6.1E-29 211.9 8.4 182 39-234 4-215 (216)
38 PRK11153 metN DL-methionine tr 99.9 2.1E-24 4.6E-29 229.0 7.7 197 38-248 3-232 (343)
39 PRK11144 modC molybdate transp 99.9 2.1E-24 4.5E-29 229.9 7.3 197 41-253 5-225 (352)
40 cd03219 ABC_Mj1267_LivG_branch 99.9 2.9E-24 6.2E-29 214.3 7.8 192 39-244 3-230 (236)
41 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 9E-24 1.9E-28 215.5 10.8 183 37-233 5-215 (254)
42 cd03224 ABC_TM1139_LivF_branch 99.9 4.8E-24 1E-28 210.5 8.4 189 39-241 3-216 (222)
43 cd03218 ABC_YhbG The ABC trans 99.9 4.6E-24 9.9E-29 212.3 8.2 192 39-244 3-220 (232)
44 TIGR01188 drrA daunorubicin re 99.9 3.2E-24 6.8E-29 223.4 7.0 185 46-244 3-211 (302)
45 COG4525 TauB ABC-type taurine 99.9 4.3E-24 9.3E-29 209.5 7.2 182 38-232 5-208 (259)
46 cd03259 ABC_Carb_Solutes_like 99.9 5.9E-24 1.3E-28 209.2 8.0 184 39-236 3-210 (213)
47 COG4555 NatA ABC-type Na+ tran 99.9 8.5E-25 1.9E-29 215.2 1.8 193 39-245 4-221 (245)
48 TIGR03522 GldA_ABC_ATP gliding 99.9 6.6E-24 1.4E-28 221.0 8.5 193 37-244 3-219 (301)
49 cd03296 ABC_CysA_sulfate_impor 99.9 8.4E-24 1.8E-28 212.1 8.8 194 37-244 3-224 (239)
50 cd03268 ABC_BcrA_bacitracin_re 99.9 9.8E-24 2.1E-28 206.9 8.9 184 39-236 3-205 (208)
51 cd03269 ABC_putative_ATPase Th 99.9 1E-23 2.2E-28 207.2 8.9 184 39-236 3-207 (210)
52 PRK15079 oligopeptide ABC tran 99.9 8.2E-24 1.8E-28 223.8 8.6 187 49-249 34-254 (331)
53 cd03293 ABC_NrtD_SsuB_transpor 99.9 9E-24 2E-28 209.1 8.2 185 39-237 3-214 (220)
54 cd03258 ABC_MetN_methionine_tr 99.9 8.1E-24 1.7E-28 211.0 7.7 192 39-244 4-228 (233)
55 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 1.1E-23 2.5E-28 207.6 8.4 180 39-233 3-216 (218)
56 cd03226 ABC_cobalt_CbiO_domain 99.9 8.9E-24 1.9E-28 207.0 7.4 181 40-234 3-203 (205)
57 COG3840 ThiQ ABC-type thiamine 99.9 6.9E-24 1.5E-28 206.1 6.2 191 40-245 5-218 (231)
58 TIGR03410 urea_trans_UrtE urea 99.9 1.3E-23 2.9E-28 209.0 8.3 191 39-243 3-218 (230)
59 cd03263 ABC_subfamily_A The AB 99.9 9.9E-24 2.1E-28 208.3 7.2 187 39-240 3-215 (220)
60 cd03266 ABC_NatA_sodium_export 99.9 1.1E-23 2.5E-28 207.6 7.6 184 39-236 4-215 (218)
61 COG4152 ABC-type uncharacteriz 99.9 8.8E-24 1.9E-28 213.0 6.8 194 37-244 3-217 (300)
62 cd03301 ABC_MalK_N The N-termi 99.9 1.5E-23 3.3E-28 206.0 8.5 184 39-236 3-210 (213)
63 TIGR02142 modC_ABC molybdenum 99.9 1.1E-23 2.4E-28 224.3 7.9 195 41-251 4-226 (354)
64 cd03256 ABC_PhnC_transporter A 99.9 1.4E-23 3E-28 209.8 7.9 191 39-243 3-231 (241)
65 TIGR02315 ABC_phnC phosphonate 99.9 1.3E-23 2.8E-28 210.5 7.5 191 39-243 4-232 (243)
66 TIGR02673 FtsE cell division A 99.9 1.7E-23 3.7E-28 205.8 8.0 181 39-233 4-213 (214)
67 TIGR03415 ABC_choXWV_ATP choli 99.9 8.7E-24 1.9E-28 227.7 5.9 196 42-250 30-258 (382)
68 PRK10895 lipopolysaccharide AB 99.9 3.4E-23 7.4E-28 207.7 9.4 194 37-244 4-224 (241)
69 cd03292 ABC_FtsE_transporter F 99.9 1.8E-23 4E-28 205.3 7.2 181 39-233 3-212 (214)
70 PRK09473 oppD oligopeptide tra 99.9 1.9E-23 4.2E-28 220.8 7.8 202 37-251 13-256 (330)
71 PRK13637 cbiO cobalt transport 99.9 2E-23 4.4E-28 216.0 7.7 193 38-244 4-232 (287)
72 PRK11022 dppD dipeptide transp 99.9 1.6E-23 3.4E-28 221.1 6.9 200 38-250 5-247 (326)
73 PRK10619 histidine/lysine/argi 99.9 2.7E-23 6E-28 210.7 8.4 194 37-244 6-239 (257)
74 PRK11308 dppF dipeptide transp 99.9 1.8E-23 3.9E-28 220.8 7.4 189 49-250 28-248 (327)
75 cd03230 ABC_DR_subfamily_A Thi 99.9 3.2E-23 6.9E-28 198.7 8.3 162 39-233 3-171 (173)
76 COG1137 YhbG ABC-type (unclass 99.9 3.8E-24 8.3E-29 210.4 1.9 195 37-245 5-227 (243)
77 PRK11831 putative ABC transpor 99.9 2.8E-23 6E-28 212.7 8.3 194 37-244 8-231 (269)
78 cd03295 ABC_OpuCA_Osmoprotecti 99.9 2.3E-23 5E-28 209.3 7.6 191 39-243 3-222 (242)
79 cd03294 ABC_Pro_Gly_Bertaine T 99.9 1.5E-23 3.2E-28 214.8 6.1 193 38-244 26-248 (269)
80 PRK09536 btuD corrinoid ABC tr 99.9 3.4E-23 7.3E-28 224.5 9.1 194 37-244 4-226 (402)
81 PRK09493 glnQ glutamine ABC tr 99.9 3.3E-23 7.1E-28 207.7 8.3 193 38-244 3-223 (240)
82 cd03235 ABC_Metallic_Cations A 99.9 2.9E-23 6.3E-28 204.3 7.6 180 40-233 3-208 (213)
83 PRK13651 cobalt transporter AT 99.9 1.7E-23 3.7E-28 219.0 6.2 194 38-245 4-253 (305)
84 cd03262 ABC_HisP_GlnQ_permease 99.9 3.3E-23 7.2E-28 203.4 7.8 182 39-234 3-212 (213)
85 PRK10908 cell division protein 99.9 3.8E-23 8.3E-28 204.9 8.2 183 39-235 4-215 (222)
86 cd03225 ABC_cobalt_CbiO_domain 99.9 3.2E-23 7E-28 203.4 7.6 180 40-233 3-210 (211)
87 PRK11264 putative amino-acid A 99.9 3.5E-23 7.7E-28 208.4 8.1 194 37-244 4-231 (250)
88 PRK11124 artP arginine transpo 99.9 4.8E-23 1E-27 206.8 8.9 193 37-243 3-227 (242)
89 PRK11614 livF leucine/isoleuci 99.9 3.1E-23 6.8E-28 207.5 7.5 194 37-244 6-224 (237)
90 PRK13647 cbiO cobalt transport 99.9 2.7E-23 5.8E-28 213.6 7.2 191 38-242 6-223 (274)
91 PRK13643 cbiO cobalt transport 99.9 2.3E-23 4.9E-28 215.8 6.5 193 38-245 3-232 (288)
92 COG0411 LivG ABC-type branched 99.9 1.1E-23 2.3E-28 212.4 3.6 195 37-245 5-238 (250)
93 PRK11247 ssuB aliphatic sulfon 99.9 3.4E-23 7.4E-28 211.6 7.3 189 37-239 13-216 (257)
94 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 5.4E-23 1.2E-27 205.9 8.6 191 39-244 4-219 (236)
95 PRK10070 glycine betaine trans 99.9 2.2E-23 4.7E-28 225.8 6.1 191 45-249 37-257 (400)
96 PRK15093 antimicrobial peptide 99.9 4.5E-23 9.7E-28 217.8 8.1 198 38-249 5-251 (330)
97 PRK11629 lolD lipoprotein tran 99.9 6.8E-23 1.5E-27 204.8 9.0 185 37-236 6-224 (233)
98 PRK14250 phosphate ABC transpo 99.9 4.6E-23 1E-27 207.4 7.7 193 38-245 5-220 (241)
99 PRK13646 cbiO cobalt transport 99.9 2.7E-23 5.9E-28 214.8 6.1 192 38-244 4-233 (286)
100 TIGR02211 LolD_lipo_ex lipopro 99.9 5.7E-23 1.2E-27 203.1 8.0 182 39-235 4-219 (221)
101 cd03260 ABC_PstB_phosphate_tra 99.9 5.2E-23 1.1E-27 204.4 7.7 187 39-241 3-224 (227)
102 PTZ00301 uridine kinase; Provi 99.9 2.4E-22 5.1E-27 200.6 12.3 178 65-254 3-193 (210)
103 PRK13634 cbiO cobalt transport 99.9 3.5E-23 7.6E-28 214.5 6.6 192 38-244 4-233 (290)
104 TIGR01978 sufC FeS assembly AT 99.9 8.1E-23 1.8E-27 204.4 8.8 190 39-242 3-230 (243)
105 TIGR00972 3a0107s01c2 phosphat 99.9 7.4E-23 1.6E-27 206.2 8.5 190 39-244 4-230 (247)
106 cd03257 ABC_NikE_OppD_transpor 99.9 8.5E-23 1.8E-27 202.2 8.8 184 39-236 4-225 (228)
107 TIGR03005 ectoine_ehuA ectoine 99.9 6.8E-23 1.5E-27 207.1 7.9 192 39-244 3-234 (252)
108 TIGR03411 urea_trans_UrtD urea 99.9 1E-22 2.2E-27 204.1 9.1 192 38-244 4-229 (242)
109 PRK11300 livG leucine/isoleuci 99.9 1E-22 2.2E-27 205.7 9.1 193 37-243 6-240 (255)
110 PRK13548 hmuV hemin importer A 99.9 1E-22 2.2E-27 207.3 9.0 193 38-244 4-228 (258)
111 PRK14247 phosphate ABC transpo 99.9 1.2E-22 2.6E-27 204.8 9.4 193 38-245 5-233 (250)
112 PRK14268 phosphate ABC transpo 99.9 8E-23 1.7E-27 207.7 8.0 193 37-245 13-241 (258)
113 PRK13641 cbiO cobalt transport 99.9 5.5E-23 1.2E-27 212.7 6.9 193 38-244 4-232 (287)
114 PRK11248 tauB taurine transpor 99.9 1E-22 2.2E-27 207.4 8.6 186 38-237 3-211 (255)
115 PRK11231 fecE iron-dicitrate t 99.9 1.2E-22 2.6E-27 205.8 8.9 194 37-244 3-225 (255)
116 cd03264 ABC_drug_resistance_li 99.9 1E-22 2.2E-27 200.2 7.9 182 39-236 3-208 (211)
117 TIGR03608 L_ocin_972_ABC putat 99.9 9E-23 1.9E-27 199.3 7.4 167 40-216 2-197 (206)
118 TIGR03740 galliderm_ABC gallid 99.9 1.5E-22 3.3E-27 200.8 9.1 188 39-240 3-207 (223)
119 PRK14267 phosphate ABC transpo 99.9 1.3E-22 2.9E-27 204.9 8.7 193 37-244 5-235 (253)
120 COG4148 ModC ABC-type molybdat 99.9 3.9E-23 8.4E-28 211.5 4.8 180 54-246 16-218 (352)
121 PRK14242 phosphate transporter 99.9 1.4E-22 3.1E-27 204.6 8.8 191 38-244 8-235 (253)
122 PRK15439 autoinducer 2 ABC tra 99.9 1.1E-22 2.4E-27 225.7 8.5 194 37-244 12-227 (510)
123 PRK13650 cbiO cobalt transport 99.9 8.8E-23 1.9E-27 210.3 7.1 192 38-244 6-227 (279)
124 PRK10584 putative ABC transpor 99.9 2E-22 4.4E-27 200.3 9.4 183 38-235 8-224 (228)
125 PRK10575 iron-hydroxamate tran 99.9 2E-22 4.4E-27 205.7 9.5 195 36-244 11-235 (265)
126 cd03229 ABC_Class3 This class 99.9 8.7E-23 1.9E-27 196.6 6.4 163 39-232 3-176 (178)
127 PRK14273 phosphate ABC transpo 99.9 1.3E-22 2.7E-27 205.3 7.7 196 37-248 8-240 (254)
128 cd03298 ABC_ThiQ_thiamine_tran 99.9 1.7E-22 3.6E-27 198.6 8.3 182 39-236 3-208 (211)
129 PRK09984 phosphonate/organopho 99.9 1.6E-22 3.4E-27 205.7 8.3 193 37-243 5-239 (262)
130 cd03232 ABC_PDR_domain2 The pl 99.9 2.8E-22 6E-27 195.5 9.5 173 38-236 5-189 (192)
131 PRK13631 cbiO cobalt transport 99.9 8.2E-23 1.8E-27 215.2 6.2 194 37-245 22-264 (320)
132 cd03215 ABC_Carb_Monos_II This 99.9 3.2E-22 7E-27 193.3 9.5 163 38-233 6-180 (182)
133 PRK10762 D-ribose transporter 99.9 2.3E-22 5E-27 222.5 9.6 192 37-242 5-226 (501)
134 cd03246 ABCC_Protease_Secretio 99.9 1.7E-22 3.7E-27 193.7 7.1 159 39-233 3-171 (173)
135 cd03213 ABCG_EPDR ABCG transpo 99.9 2.4E-22 5.2E-27 196.4 8.2 173 38-236 5-191 (194)
136 TIGR02769 nickel_nikE nickel i 99.9 2.3E-22 4.9E-27 205.3 8.2 193 38-244 4-238 (265)
137 COG0410 LivF ABC-type branched 99.9 1.3E-22 2.9E-27 203.1 6.4 194 37-244 4-224 (237)
138 PRK13652 cbiO cobalt transport 99.9 2.5E-22 5.3E-27 206.7 8.4 193 38-244 5-225 (277)
139 PRK13638 cbiO cobalt transport 99.9 1.2E-22 2.5E-27 208.1 5.9 192 39-244 4-223 (271)
140 PRK09700 D-allose transporter 99.9 2.6E-22 5.7E-27 222.4 9.2 194 37-244 6-232 (510)
141 COG0444 DppD ABC-type dipeptid 99.9 1.1E-22 2.3E-27 212.2 5.7 195 47-254 16-251 (316)
142 PRK10253 iron-enterobactin tra 99.9 2.6E-22 5.7E-27 204.9 8.4 195 36-244 7-231 (265)
143 PRK14256 phosphate ABC transpo 99.9 3.4E-22 7.3E-27 202.0 8.8 194 37-245 5-235 (252)
144 TIGR03873 F420-0_ABC_ATP propo 99.9 3.2E-22 7E-27 202.8 8.5 192 39-244 4-224 (256)
145 PRK13649 cbiO cobalt transport 99.9 2.1E-22 4.6E-27 206.9 7.3 192 38-244 4-232 (280)
146 PRK10261 glutathione transport 99.9 2.2E-22 4.7E-27 228.8 7.8 199 37-249 314-556 (623)
147 PRK14249 phosphate ABC transpo 99.9 4E-22 8.7E-27 201.4 8.9 196 38-249 6-238 (251)
148 PRK14240 phosphate transporter 99.9 3.4E-22 7.4E-27 201.5 8.4 192 38-245 5-233 (250)
149 PRK14270 phosphate ABC transpo 99.9 3.8E-22 8.3E-27 201.5 8.7 194 36-245 4-234 (251)
150 PRK13549 xylose transporter AT 99.9 4.4E-22 9.6E-27 220.5 9.6 193 37-243 6-229 (506)
151 PRK13644 cbiO cobalt transport 99.9 2E-22 4.4E-27 207.1 6.5 191 39-244 4-222 (274)
152 PRK14262 phosphate ABC transpo 99.9 3.6E-22 7.9E-27 201.3 8.1 191 38-244 5-232 (250)
153 PRK14272 phosphate ABC transpo 99.9 4.2E-22 9.1E-27 200.8 8.5 193 37-244 5-234 (252)
154 PRK10982 galactose/methyl gala 99.9 3.6E-22 7.9E-27 220.3 8.7 190 40-243 2-220 (491)
155 PRK13635 cbiO cobalt transport 99.9 2.4E-22 5.2E-27 207.3 6.7 193 37-244 6-227 (279)
156 PRK13636 cbiO cobalt transport 99.9 2.9E-22 6.4E-27 206.8 7.4 194 37-244 6-229 (283)
157 PRK13639 cbiO cobalt transport 99.9 2.7E-22 5.8E-27 206.2 7.0 193 38-244 3-224 (275)
158 PRK14235 phosphate transporter 99.9 6.7E-22 1.4E-26 202.3 9.8 193 36-244 19-249 (267)
159 PRK14239 phosphate transporter 99.9 5E-22 1.1E-26 200.3 8.3 193 37-245 6-235 (252)
160 PRK14274 phosphate ABC transpo 99.9 5.8E-22 1.3E-26 201.3 8.8 193 37-245 13-242 (259)
161 PRK11701 phnK phosphonate C-P 99.9 4.5E-22 9.8E-27 202.0 8.0 195 37-245 7-240 (258)
162 PRK14253 phosphate ABC transpo 99.9 5.5E-22 1.2E-26 199.9 8.5 191 38-244 5-231 (249)
163 PRK10744 pstB phosphate transp 99.9 3.5E-22 7.7E-27 203.2 7.2 191 38-244 15-242 (260)
164 PRK14241 phosphate transporter 99.9 5.5E-22 1.2E-26 201.3 8.5 193 37-244 5-240 (258)
165 PRK10261 glutathione transport 99.9 4.6E-22 1E-26 226.1 8.7 195 37-245 13-257 (623)
166 COG4161 ArtP ABC-type arginine 99.9 3E-22 6.4E-27 191.8 5.9 197 39-250 5-233 (242)
167 TIGR00968 3a0106s01 sulfate AB 99.9 5E-22 1.1E-26 199.5 7.7 192 39-244 3-218 (237)
168 PRK14255 phosphate ABC transpo 99.9 7E-22 1.5E-26 199.5 8.8 196 37-248 6-238 (252)
169 PRK14269 phosphate ABC transpo 99.9 5E-22 1.1E-26 200.3 7.7 192 38-245 4-229 (246)
170 PRK14251 phosphate ABC transpo 99.9 5.9E-22 1.3E-26 199.9 8.2 193 37-245 5-234 (251)
171 cd03297 ABC_ModC_molybdenum_tr 99.9 4E-22 8.7E-27 196.6 6.8 179 41-236 5-211 (214)
172 PRK14237 phosphate transporter 99.9 7.6E-22 1.7E-26 201.8 9.0 193 37-245 21-250 (267)
173 PRK14248 phosphate ABC transpo 99.9 6E-22 1.3E-26 202.3 8.2 192 37-244 22-250 (268)
174 cd03251 ABCC_MsbA MsbA is an e 99.9 4.7E-22 1E-26 198.2 7.2 188 39-243 3-222 (234)
175 cd03300 ABC_PotA_N PotA is an 99.9 5.9E-22 1.3E-26 198.1 7.8 192 39-244 3-218 (232)
176 TIGR01277 thiQ thiamine ABC tr 99.9 7.7E-22 1.7E-26 194.7 8.5 184 39-238 3-210 (213)
177 cd03233 ABC_PDR_domain1 The pl 99.9 8.6E-22 1.9E-26 193.7 8.7 179 38-236 5-199 (202)
178 cd03217 ABC_FeS_Assembly ABC-t 99.9 8.2E-22 1.8E-26 193.3 8.5 173 39-239 3-187 (200)
179 PRK13543 cytochrome c biogenes 99.9 8.9E-22 1.9E-26 194.8 8.9 171 37-217 12-201 (214)
180 cd03247 ABCC_cytochrome_bd The 99.9 4.2E-22 9E-27 191.6 6.3 164 39-236 3-175 (178)
181 TIGR02633 xylG D-xylose ABC tr 99.9 1E-21 2.2E-26 217.1 9.9 190 38-241 3-225 (500)
182 TIGR02323 CP_lyasePhnK phospho 99.9 6.5E-22 1.4E-26 199.8 7.5 195 37-245 4-237 (253)
183 COG4608 AppF ABC-type oligopep 99.9 6.1E-22 1.3E-26 202.7 7.3 182 48-254 25-207 (268)
184 PRK14259 phosphate ABC transpo 99.9 1.1E-21 2.3E-26 201.1 9.2 181 36-232 13-228 (269)
185 PRK15112 antimicrobial peptide 99.9 5.9E-22 1.3E-26 202.7 7.1 195 37-245 5-238 (267)
186 PRK10771 thiQ thiamine transpo 99.9 6.6E-22 1.4E-26 197.6 7.3 191 38-244 3-217 (232)
187 PRK14244 phosphate ABC transpo 99.9 8E-22 1.7E-26 199.2 7.7 195 34-244 3-235 (251)
188 PRK11288 araG L-arabinose tran 99.9 1E-21 2.2E-26 217.4 9.2 185 38-236 6-219 (501)
189 PRK13648 cbiO cobalt transport 99.9 5E-22 1.1E-26 203.2 6.2 192 38-244 9-229 (269)
190 PRK13645 cbiO cobalt transport 99.8 5.8E-22 1.2E-26 204.9 6.5 193 37-244 7-238 (289)
191 PRK14261 phosphate ABC transpo 99.8 1.3E-21 2.9E-26 197.8 8.8 193 37-245 7-236 (253)
192 PRK13632 cbiO cobalt transport 99.8 7.2E-22 1.6E-26 202.4 6.9 194 36-244 7-229 (271)
193 PRK14275 phosphate ABC transpo 99.8 1.2E-21 2.6E-26 202.7 8.6 192 37-244 40-268 (286)
194 cd03252 ABCC_Hemolysin The ABC 99.8 6.4E-22 1.4E-26 197.8 6.2 189 39-244 3-223 (237)
195 PRK13633 cobalt transporter AT 99.8 9.2E-22 2E-26 202.7 7.4 193 37-244 5-231 (280)
196 cd03299 ABC_ModC_like Archeal 99.8 8.1E-22 1.8E-26 197.7 6.8 190 39-243 3-216 (235)
197 PRK14271 phosphate ABC transpo 99.8 1.4E-21 3E-26 201.4 8.4 194 36-245 21-250 (276)
198 PRK14245 phosphate ABC transpo 99.8 1.7E-21 3.6E-26 196.8 8.8 192 38-245 5-233 (250)
199 PRK14243 phosphate transporter 99.8 1.7E-21 3.7E-26 199.0 8.9 193 37-245 11-247 (264)
200 PRK13642 cbiO cobalt transport 99.8 7.1E-22 1.5E-26 203.3 6.1 193 37-244 5-227 (277)
201 PRK14238 phosphate transporter 99.8 1.5E-21 3.4E-26 200.2 8.4 193 37-245 25-254 (271)
202 PRK14257 phosphate ABC transpo 99.8 1.3E-21 2.9E-26 206.9 8.1 198 37-250 81-317 (329)
203 PRK13538 cytochrome c biogenes 99.8 2.2E-21 4.7E-26 190.5 8.9 169 39-217 4-193 (204)
204 PF00485 PRK: Phosphoribulokin 99.8 1.3E-21 2.8E-26 191.1 7.2 173 67-252 1-190 (194)
205 cd03254 ABCC_Glucan_exporter_l 99.8 8.7E-22 1.9E-26 195.6 6.1 187 38-241 4-221 (229)
206 PRK13640 cbiO cobalt transport 99.8 1E-21 2.2E-26 202.7 6.7 193 37-244 6-230 (282)
207 PRK10418 nikD nickel transport 99.8 1.4E-21 3E-26 198.2 7.5 194 37-245 5-229 (254)
208 PRK10419 nikE nickel transport 99.8 2.1E-21 4.6E-26 198.8 8.9 193 38-244 5-239 (268)
209 PRK13539 cytochrome c biogenes 99.8 2.6E-21 5.6E-26 190.6 9.0 171 37-217 3-191 (207)
210 cd03228 ABCC_MRP_Like The MRP 99.8 1.1E-21 2.4E-26 187.8 6.1 157 39-232 3-169 (171)
211 PRK14266 phosphate ABC transpo 99.8 2.4E-21 5.1E-26 195.4 8.8 196 38-249 5-237 (250)
212 cd03223 ABCD_peroxisomal_ALDP 99.8 1.9E-21 4.1E-26 185.9 7.6 146 39-215 3-150 (166)
213 cd03231 ABC_CcmA_heme_exporter 99.8 1.7E-21 3.6E-26 191.1 7.3 169 39-217 3-189 (201)
214 PRK13540 cytochrome c biogenes 99.8 2.5E-21 5.5E-26 189.5 8.5 168 39-216 4-190 (200)
215 TIGR01184 ntrCD nitrate transp 99.8 1.4E-21 3.1E-26 195.5 6.8 179 52-244 1-202 (230)
216 CHL00131 ycf16 sulfate ABC tra 99.8 3.1E-21 6.7E-26 194.6 9.2 192 37-242 8-237 (252)
217 PRK14236 phosphate transporter 99.8 3E-21 6.6E-26 197.9 9.2 193 37-245 26-255 (272)
218 TIGR01189 ccmA heme ABC export 99.8 2.7E-21 5.9E-26 188.8 8.4 167 39-215 3-189 (198)
219 PRK13547 hmuV hemin importer A 99.8 2.4E-21 5.3E-26 199.5 8.5 193 38-244 3-242 (272)
220 cd03267 ABC_NatA_like Similar 99.8 2.3E-21 5E-26 194.7 8.1 179 44-236 29-233 (236)
221 PRK14265 phosphate ABC transpo 99.8 2.2E-21 4.8E-26 199.5 7.9 193 37-245 21-257 (274)
222 PRK15134 microcin C ABC transp 99.8 2.4E-21 5.3E-26 215.7 8.8 193 38-244 7-244 (529)
223 PRK15134 microcin C ABC transp 99.8 1.8E-21 3.8E-26 216.9 7.6 195 37-245 276-514 (529)
224 PRK14258 phosphate ABC transpo 99.8 2.9E-21 6.4E-26 196.7 8.6 198 37-249 8-248 (261)
225 PRK10247 putative ABC transpor 99.8 2.3E-21 5.1E-26 193.2 7.7 178 37-230 8-210 (225)
226 TIGR02982 heterocyst_DevA ABC 99.8 2.6E-21 5.7E-26 191.8 8.0 181 39-234 4-218 (220)
227 TIGR02324 CP_lyasePhnL phospho 99.8 3.1E-21 6.7E-26 191.3 8.5 169 39-217 4-213 (224)
228 COG4181 Predicted ABC-type tra 99.8 2E-21 4.3E-26 187.6 6.7 181 41-235 15-224 (228)
229 COG1129 MglA ABC-type sugar tr 99.8 1.8E-21 4E-26 214.0 7.4 189 38-240 10-228 (500)
230 COG2274 SunT ABC-type bacterio 99.8 1.4E-21 3E-26 224.4 6.6 189 37-244 472-694 (709)
231 TIGR03269 met_CoM_red_A2 methy 99.8 1.7E-21 3.8E-26 216.3 7.2 190 39-242 3-254 (520)
232 PLN02348 phosphoribulokinase 99.8 3E-20 6.5E-25 199.7 16.2 173 61-246 45-241 (395)
233 cd03234 ABCG_White The White s 99.8 1.8E-21 3.9E-26 193.7 6.2 184 39-236 6-223 (226)
234 PRK14260 phosphate ABC transpo 99.8 3.2E-21 7E-26 196.0 8.2 193 37-245 8-242 (259)
235 PRK09544 znuC high-affinity zi 99.8 2.7E-21 5.8E-26 196.8 7.5 189 37-244 5-207 (251)
236 TIGR01166 cbiO cobalt transpor 99.8 1.5E-21 3.3E-26 189.1 5.2 159 47-215 3-189 (190)
237 PRK15064 ABC transporter ATP-b 99.8 3.3E-21 7.2E-26 214.7 8.6 184 38-242 3-238 (530)
238 cd03369 ABCC_NFT1 Domain 2 of 99.8 1.6E-21 3.5E-26 191.4 5.3 183 38-237 8-203 (207)
239 cd03289 ABCC_CFTR2 The CFTR su 99.8 1.2E-21 2.7E-26 202.4 4.7 191 38-245 4-224 (275)
240 COG4604 CeuD ABC-type enteroch 99.8 1.9E-21 4.1E-26 191.2 5.7 195 38-245 3-224 (252)
241 TIGR03269 met_CoM_red_A2 methy 99.8 2.7E-21 5.9E-26 214.8 7.7 191 37-241 280-512 (520)
242 PRK13549 xylose transporter AT 99.8 3.4E-21 7.4E-26 213.5 8.4 190 37-240 260-488 (506)
243 cd03248 ABCC_TAP TAP, the Tran 99.8 3E-21 6.5E-26 191.7 6.9 184 33-233 8-224 (226)
244 PRK14254 phosphate ABC transpo 99.8 4.4E-21 9.5E-26 198.6 8.5 192 37-244 40-267 (285)
245 PRK14252 phosphate ABC transpo 99.8 4.5E-21 9.7E-26 195.6 8.3 197 37-249 17-252 (265)
246 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.8 2.8E-21 6E-26 193.4 6.6 186 39-241 3-221 (238)
247 cd03253 ABCC_ATM1_transporter 99.8 3.1E-21 6.7E-26 192.5 6.9 189 39-244 3-222 (236)
248 cd02025 PanK Pantothenate kina 99.8 1.1E-20 2.3E-25 189.5 10.6 186 67-253 1-213 (220)
249 cd03216 ABC_Carb_Monos_I This 99.8 3.5E-21 7.7E-26 183.5 6.8 149 39-235 3-160 (163)
250 PRK11819 putative ABC transpor 99.8 5.1E-21 1.1E-25 214.7 9.2 179 37-236 7-239 (556)
251 PRK14246 phosphate ABC transpo 99.8 3.1E-21 6.8E-26 196.6 6.7 198 36-248 10-243 (257)
252 cd03250 ABCC_MRP_domain1 Domai 99.8 1.7E-21 3.7E-26 190.8 4.4 173 39-232 3-202 (204)
253 COG4172 ABC-type uncharacteriz 99.8 2.8E-21 6E-26 205.6 6.2 193 48-253 299-523 (534)
254 COG1123 ATPase components of v 99.8 3.6E-21 7.7E-26 213.1 7.2 203 38-253 7-251 (539)
255 PRK14263 phosphate ABC transpo 99.8 5.9E-21 1.3E-25 195.0 8.3 194 36-245 8-244 (261)
256 COG3845 ABC-type uncharacteriz 99.8 5.5E-21 1.2E-25 207.6 8.4 185 38-236 6-219 (501)
257 PRK09580 sufC cysteine desulfu 99.8 8.9E-21 1.9E-25 190.5 8.9 190 39-242 4-231 (248)
258 PRK10938 putative molybdenum t 99.8 5.6E-21 1.2E-25 210.7 8.2 193 37-243 4-221 (490)
259 TIGR02770 nickel_nikD nickel i 99.8 2.4E-21 5.3E-26 193.5 4.6 181 51-245 1-214 (230)
260 cd03245 ABCC_bacteriocin_expor 99.8 2.9E-21 6.4E-26 190.7 5.0 180 39-235 5-216 (220)
261 PRK15056 manganese/iron transp 99.8 1.2E-20 2.5E-25 193.7 9.3 193 37-244 7-228 (272)
262 TIGR03796 NHPM_micro_ABC1 NHPM 99.8 4.1E-21 8.9E-26 220.6 6.4 189 37-244 478-698 (710)
263 PRK09700 D-allose transporter 99.8 1E-20 2.2E-25 209.8 9.0 185 37-237 266-489 (510)
264 PRK03695 vitamin B12-transport 99.8 6.2E-21 1.3E-25 193.2 6.6 180 51-244 11-220 (248)
265 cd03214 ABC_Iron-Siderophores_ 99.8 6.8E-21 1.5E-25 183.7 6.3 166 40-236 3-177 (180)
266 TIGR03719 ABC_ABC_ChvD ATP-bin 99.8 1.2E-20 2.5E-25 211.5 8.9 179 37-236 5-237 (552)
267 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.8 1.1E-20 2.4E-25 188.7 7.6 180 38-236 24-221 (224)
268 KOG0058 Peptide exporter, ABC 99.8 8.4E-21 1.8E-25 213.6 7.5 201 34-251 463-696 (716)
269 TIGR03797 NHPM_micro_ABC2 NHPM 99.8 8.2E-21 1.8E-25 217.5 7.4 190 36-244 451-671 (686)
270 cd03244 ABCC_MRP_domain2 Domai 99.8 5.8E-21 1.3E-25 188.8 5.2 182 39-237 5-217 (221)
271 TIGR02633 xylG D-xylose ABC tr 99.8 1.1E-20 2.3E-25 208.9 7.9 186 37-236 258-482 (500)
272 cd02029 PRK_like Phosphoribulo 99.8 6.9E-20 1.5E-24 188.5 12.8 167 67-245 1-198 (277)
273 TIGR01257 rim_protein retinal- 99.8 1E-20 2.2E-25 235.0 8.0 195 36-244 1937-2157(2272)
274 cd03290 ABCC_SUR1_N The SUR do 99.8 1.1E-20 2.3E-25 187.0 6.5 178 39-232 3-216 (218)
275 PRK15064 ABC transporter ATP-b 99.8 1.6E-20 3.5E-25 209.3 8.3 187 36-243 319-522 (530)
276 COG1132 MdlB ABC-type multidru 99.8 7.4E-21 1.6E-25 213.3 5.6 192 37-245 329-551 (567)
277 cd02028 UMPK_like Uridine mono 99.8 4.9E-20 1.1E-24 179.0 10.5 167 67-245 1-176 (179)
278 PRK11174 cysteine/glutathione 99.8 1.1E-20 2.4E-25 212.4 6.7 191 37-244 350-570 (588)
279 COG4559 ABC-type hemin transpo 99.8 1.9E-20 4.2E-25 185.8 6.8 193 39-245 4-229 (259)
280 PRK13541 cytochrome c biogenes 99.8 3.7E-20 7.9E-25 180.6 7.7 167 39-216 4-186 (195)
281 PRK14264 phosphate ABC transpo 99.8 4.4E-20 9.5E-25 192.9 8.7 192 37-244 46-287 (305)
282 TIGR01193 bacteriocin_ABC ABC- 99.8 1.2E-20 2.7E-25 216.7 5.0 190 37-244 474-695 (708)
283 TIGR00958 3a01208 Conjugate Tr 99.8 1.7E-20 3.7E-25 216.2 5.9 189 37-244 479-700 (711)
284 PRK10762 D-ribose transporter 99.8 4.5E-20 9.6E-25 204.4 8.8 178 50-241 266-479 (501)
285 PRK10790 putative multidrug tr 99.8 1.3E-20 2.8E-25 212.1 4.4 192 37-245 341-562 (592)
286 cd03288 ABCC_SUR2 The SUR doma 99.8 2.5E-20 5.3E-25 189.6 5.8 191 37-244 20-241 (257)
287 TIGR01187 potA spermidine/putr 99.8 1E-20 2.2E-25 199.6 2.8 172 70-252 1-196 (325)
288 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.8 4.9E-20 1.1E-24 172.6 7.2 140 39-233 3-143 (144)
289 PRK11176 lipid transporter ATP 99.8 1.6E-20 3.4E-25 210.7 4.4 191 37-244 342-565 (582)
290 PRK11288 araG L-arabinose tran 99.8 4.9E-20 1.1E-24 204.1 8.0 175 50-238 267-477 (501)
291 TIGR03375 type_I_sec_LssB type 99.8 3E-20 6.5E-25 213.2 6.4 191 37-244 464-686 (694)
292 KOG0055 Multidrug/pheromone ex 99.8 2E-20 4.4E-25 220.3 4.6 198 37-252 351-581 (1228)
293 COG4172 ABC-type uncharacteriz 99.8 1.3E-19 2.7E-24 193.1 9.5 194 46-252 20-253 (534)
294 KOG4203 Armadillo/beta-Catenin 99.8 1.4E-20 3.1E-25 207.4 2.4 398 61-578 40-462 (473)
295 TIGR01842 type_I_sec_PrtD type 99.8 5E-20 1.1E-24 205.8 6.7 191 37-243 317-539 (544)
296 COG4167 SapF ABC-type antimicr 99.8 3.7E-20 8.1E-25 180.4 4.7 195 44-251 21-244 (267)
297 TIGR01257 rim_protein retinal- 99.8 5.4E-20 1.2E-24 228.7 7.3 191 37-242 929-1145(2272)
298 PRK11160 cysteine/glutathione 99.8 4.6E-20 1E-24 207.7 6.1 191 37-244 339-560 (574)
299 TIGR02868 CydC thiol reductant 99.8 5.9E-20 1.3E-24 204.1 6.7 164 37-212 335-528 (529)
300 TIGR00554 panK_bact pantothena 99.8 4.6E-19 1E-23 184.8 12.5 191 62-253 59-281 (290)
301 PRK13546 teichoic acids export 99.8 9.5E-20 2.1E-24 187.1 7.0 178 47-244 35-230 (264)
302 PLN03211 ABC transporter G-25; 99.8 9.8E-20 2.1E-24 208.5 7.4 191 40-244 72-294 (659)
303 PRK10982 galactose/methyl gala 99.8 1.7E-19 3.7E-24 199.1 9.0 184 37-236 251-470 (491)
304 PRK15439 autoinducer 2 ABC tra 99.8 1.5E-19 3.3E-24 200.8 8.6 175 51-239 278-485 (510)
305 cd03222 ABC_RNaseL_inhibitor T 99.8 1.4E-19 3E-24 176.2 6.8 143 40-233 4-148 (177)
306 PRK13657 cyclic beta-1,2-gluca 99.8 8.8E-20 1.9E-24 205.4 6.2 191 37-244 335-556 (588)
307 cd03237 ABC_RNaseL_inhibitor_d 99.8 9.3E-20 2E-24 185.3 5.7 163 51-232 9-191 (246)
308 PRK11147 ABC transporter ATPas 99.8 1.7E-19 3.7E-24 205.6 8.2 180 37-237 320-518 (635)
309 TIGR03719 ABC_ABC_ChvD ATP-bin 99.8 1.8E-19 4E-24 201.9 8.2 175 37-232 323-515 (552)
310 cd02026 PRK Phosphoribulokinas 99.8 3.5E-18 7.7E-23 176.8 17.0 167 67-246 1-174 (273)
311 PRK13545 tagH teichoic acids e 99.8 1.5E-19 3.3E-24 200.8 7.1 187 38-244 23-230 (549)
312 PRK10789 putative multidrug tr 99.8 1.3E-19 2.7E-24 203.8 6.2 190 38-244 315-536 (569)
313 TIGR01192 chvA glucan exporter 99.8 1.2E-19 2.5E-24 205.0 5.8 191 37-244 335-556 (585)
314 PRK11819 putative ABC transpor 99.8 3.7E-19 8E-24 199.8 9.7 175 37-232 325-517 (556)
315 COG4988 CydD ABC-type transpor 99.8 1.6E-19 3.4E-24 199.8 6.1 190 39-245 323-542 (559)
316 TIGR00235 udk uridine kinase. 99.8 1.4E-18 3E-23 171.4 12.1 176 66-253 7-191 (207)
317 PRK10938 putative molybdenum t 99.8 2.6E-19 5.7E-24 197.5 7.6 187 37-237 261-483 (490)
318 PRK10535 macrolide transporter 99.8 6.3E-19 1.4E-23 201.5 10.5 194 37-245 5-231 (648)
319 TIGR02203 MsbA_lipidA lipid A 99.8 1.4E-19 3.1E-24 202.2 5.0 192 37-245 331-555 (571)
320 PRK10522 multidrug transporter 99.8 2.6E-19 5.6E-24 200.3 6.8 194 37-245 323-538 (547)
321 PRK10636 putative ABC transpor 99.8 3.7E-19 8E-24 203.1 7.9 179 37-236 313-506 (638)
322 TIGR01846 type_I_sec_HlyB type 99.8 2.5E-19 5.4E-24 205.7 6.6 191 37-244 456-678 (694)
323 PRK05480 uridine/cytidine kina 99.8 3.1E-18 6.6E-23 168.6 13.2 176 64-251 5-189 (209)
324 PRK13409 putative ATPase RIL; 99.8 4.7E-19 1E-23 200.6 8.4 175 37-232 341-529 (590)
325 KOG0057 Mitochondrial Fe/S clu 99.8 3.3E-19 7.1E-24 195.6 6.5 191 37-244 352-572 (591)
326 PTZ00265 multidrug resistance 99.8 3.5E-19 7.7E-24 218.7 7.3 192 37-244 1166-1450(1466)
327 cd03291 ABCC_CFTR1 The CFTR su 99.8 2.1E-19 4.5E-24 186.5 4.5 184 37-244 40-245 (282)
328 TIGR03771 anch_rpt_ABC anchore 99.8 3.6E-19 7.9E-24 177.5 6.0 172 57-243 1-198 (223)
329 TIGR02857 CydD thiol reductant 99.8 4.2E-19 9.1E-24 197.3 6.7 168 37-216 321-520 (529)
330 PRK15453 phosphoribulokinase; 99.8 3.9E-18 8.4E-23 176.8 13.3 172 64-246 4-205 (290)
331 PRK15177 Vi polysaccharide exp 99.8 3.7E-19 8E-24 176.7 5.6 171 50-241 1-187 (213)
332 TIGR02204 MsbA_rel ABC transpo 99.8 3.8E-19 8.3E-24 199.2 6.0 191 37-244 338-561 (576)
333 PRK05439 pantothenate kinase; 99.8 3.6E-18 7.8E-23 179.6 12.6 192 61-253 82-301 (311)
334 COG4136 ABC-type uncharacteriz 99.8 1.9E-19 4.1E-24 170.9 2.5 170 38-216 4-198 (213)
335 PRK10636 putative ABC transpor 99.8 4E-19 8.6E-24 202.8 5.6 180 38-236 3-225 (638)
336 PRK07429 phosphoribulokinase; 99.8 1.1E-17 2.3E-22 177.3 15.5 171 63-246 6-183 (327)
337 PLN03130 ABC transporter C fam 99.8 5.1E-19 1.1E-23 219.1 6.2 192 37-245 1238-1460(1622)
338 PLN03232 ABC transporter C fam 99.8 2.8E-19 6.2E-24 220.3 3.7 192 37-245 1235-1457(1495)
339 COG4674 Uncharacterized ABC-ty 99.7 1.7E-18 3.6E-23 170.3 7.9 193 37-244 6-233 (249)
340 PTZ00265 multidrug resistance 99.7 1.1E-18 2.4E-23 214.4 7.6 181 37-233 383-655 (1466)
341 COG4618 ArpD ABC-type protease 99.7 1.5E-18 3.3E-23 189.1 7.7 193 36-244 334-558 (580)
342 TIGR01194 cyc_pep_trnsptr cycl 99.7 1.1E-18 2.3E-23 195.9 6.5 184 37-236 338-549 (555)
343 KOG0055 Multidrug/pheromone ex 99.7 8.7E-19 1.9E-23 206.7 5.7 201 34-252 985-1218(1228)
344 PTZ00243 ABC transporter; Prov 99.7 5.8E-19 1.3E-23 218.0 4.0 199 36-251 1308-1538(1560)
345 TIGR00955 3a01204 The Eye Pigm 99.7 1.8E-18 4E-23 196.6 6.9 185 46-244 35-254 (617)
346 TIGR00954 3a01203 Peroxysomal 99.7 2.1E-18 4.5E-23 197.6 7.3 162 37-216 452-642 (659)
347 cd00267 ABC_ATPase ABC (ATP-bi 99.7 3E-18 6.6E-23 161.3 7.0 134 40-217 3-144 (157)
348 cd03236 ABC_RNaseL_inhibitor_d 99.7 1.2E-18 2.5E-23 178.4 4.4 177 40-232 4-214 (255)
349 TIGR00957 MRP_assoc_pro multi 99.7 9E-19 1.9E-23 216.2 3.9 191 37-244 1285-1506(1522)
350 COG4619 ABC-type uncharacteriz 99.7 9.2E-19 2E-23 168.8 2.6 165 42-217 9-198 (223)
351 PRK11147 ABC transporter ATPas 99.7 7.9E-18 1.7E-22 192.0 9.9 182 37-236 4-232 (635)
352 COG4987 CydC ABC-type transpor 99.7 1.8E-18 3.8E-23 189.7 3.6 192 36-244 336-559 (573)
353 PLN03073 ABC transporter F fam 99.7 7E-18 1.5E-22 194.9 7.8 177 37-236 509-703 (718)
354 cd02023 UMPK Uridine monophosp 99.7 8.5E-17 1.8E-21 157.0 13.3 173 67-251 1-182 (198)
355 TIGR01271 CFTR_protein cystic 99.7 6E-18 1.3E-22 208.6 5.5 192 37-245 1218-1439(1490)
356 COG1101 PhnK ABC-type uncharac 99.7 7.6E-18 1.6E-22 167.8 4.9 176 48-236 18-228 (263)
357 COG0488 Uup ATPase components 99.7 2.7E-17 5.9E-22 183.9 9.1 161 37-214 4-211 (530)
358 TIGR00956 3a01205 Pleiotropic 99.7 3E-17 6.6E-22 201.2 10.0 189 38-239 761-986 (1394)
359 COG4107 PhnK ABC-type phosphon 99.7 3.7E-17 7.9E-22 158.6 7.7 200 38-250 8-245 (258)
360 COG1134 TagH ABC-type polysacc 99.7 1.4E-17 3E-22 168.5 4.9 181 45-244 36-234 (249)
361 cd03238 ABC_UvrA The excision 99.7 2E-17 4.3E-22 161.0 5.6 154 48-233 7-164 (176)
362 COG4586 ABC-type uncharacteriz 99.7 6.8E-18 1.5E-22 172.9 1.9 184 46-243 34-243 (325)
363 PRK13409 putative ATPase RIL; 99.7 1.1E-17 2.4E-22 189.5 3.6 175 41-232 78-286 (590)
364 TIGR00957 MRP_assoc_pro multi 99.7 2.9E-17 6.3E-22 203.0 6.9 187 37-244 637-848 (1522)
365 PLN03140 ABC transporter G fam 99.7 8.1E-17 1.8E-21 197.7 10.1 182 48-242 177-423 (1470)
366 KOG0056 Heavy metal exporter H 99.7 2.5E-17 5.5E-22 178.4 4.9 195 34-245 535-760 (790)
367 KOG0059 Lipid exporter ABCA1 a 99.7 5.9E-17 1.3E-21 191.1 7.7 195 35-243 563-784 (885)
368 PLN03130 ABC transporter C fam 99.7 6.3E-17 1.4E-21 200.6 7.0 186 37-244 615-826 (1622)
369 TIGR00956 3a01205 Pleiotropic 99.7 9.3E-17 2E-21 196.9 8.4 184 47-244 72-298 (1394)
370 COG0396 sufC Cysteine desulfur 99.7 1.7E-16 3.7E-21 159.4 8.0 191 38-241 5-229 (251)
371 TIGR01271 CFTR_protein cystic 99.7 4.3E-17 9.4E-22 201.0 4.4 174 49-244 439-634 (1490)
372 PLN03140 ABC transporter G fam 99.6 1E-16 2.2E-21 196.9 7.1 176 47-236 891-1100(1470)
373 PLN03232 ABC transporter C fam 99.6 9.3E-17 2E-21 198.3 6.5 187 37-244 615-826 (1495)
374 PLN03073 ABC transporter F fam 99.6 1.1E-16 2.3E-21 185.1 5.2 184 36-236 177-420 (718)
375 COG4133 CcmA ABC-type transpor 99.6 1.8E-16 3.9E-21 155.1 5.4 165 38-212 4-189 (209)
376 COG4778 PhnL ABC-type phosphon 99.6 5.3E-16 1.1E-20 150.1 7.7 159 49-217 24-216 (235)
377 PF00005 ABC_tran: ABC transpo 99.6 7.5E-17 1.6E-21 147.2 0.6 121 52-175 1-137 (137)
378 PTZ00243 ABC transporter; Prov 99.6 3.2E-16 6.9E-21 194.0 5.2 180 44-245 668-869 (1560)
379 PRK09270 nucleoside triphospha 99.6 5.1E-15 1.1E-19 148.6 10.1 176 62-250 30-221 (229)
380 COG1119 ModF ABC-type molybden 99.6 2.6E-15 5.5E-20 152.3 6.6 171 35-217 30-237 (257)
381 COG5265 ATM1 ABC-type transpor 99.6 1.2E-15 2.7E-20 163.6 4.0 191 37-244 263-484 (497)
382 cd02024 NRK1 Nicotinamide ribo 99.5 1.9E-14 4.1E-19 141.7 10.0 132 67-198 1-152 (187)
383 COG0488 Uup ATPase components 99.5 9.5E-15 2.1E-19 163.6 8.4 166 34-216 319-499 (530)
384 KOG0061 Transporter, ABC super 99.5 7E-15 1.5E-19 167.5 7.1 156 48-213 42-230 (613)
385 cd03270 ABC_UvrA_I The excisio 99.5 3.7E-15 8.1E-20 149.5 2.5 172 44-230 3-211 (226)
386 KOG0054 Multidrug resistance-a 99.5 7.5E-15 1.6E-19 176.9 2.5 197 37-250 1139-1366(1381)
387 COG1072 CoaA Panthothenate kin 99.5 3.9E-13 8.5E-18 138.4 13.3 149 60-209 77-242 (283)
388 KOG0054 Multidrug resistance-a 99.5 1.9E-14 4.1E-19 173.5 2.8 176 48-245 533-730 (1381)
389 COG4615 PvdE ABC-type sideroph 99.4 3.5E-14 7.6E-19 151.6 2.3 186 38-237 324-528 (546)
390 PRK06696 uridine kinase; Valid 99.4 6.3E-13 1.4E-17 133.0 11.0 153 62-215 19-184 (223)
391 cd03278 ABC_SMC_barmotin Barmo 99.4 4.8E-14 1E-18 139.1 1.5 148 53-216 14-179 (197)
392 COG4138 BtuD ABC-type cobalami 99.4 4.8E-13 1.1E-17 130.3 6.9 178 52-244 15-219 (248)
393 cd03271 ABC_UvrA_II The excisi 99.4 2.6E-13 5.6E-18 140.0 5.2 169 47-230 6-244 (261)
394 cd03272 ABC_SMC3_euk Eukaryoti 99.4 1.5E-13 3.3E-18 137.8 2.7 153 46-214 12-222 (243)
395 cd03279 ABC_sbcCD SbcCD and ot 99.4 1.4E-13 3E-18 136.6 1.9 165 53-233 18-209 (213)
396 COG4170 SapD ABC-type antimicr 99.3 3.7E-12 8E-17 127.1 7.7 197 45-254 16-256 (330)
397 PRK07667 uridine kinase; Provi 99.3 6.1E-12 1.3E-16 123.5 8.5 148 64-216 16-174 (193)
398 COG1129 MglA ABC-type sugar tr 99.3 5.1E-12 1.1E-16 139.9 8.3 173 51-237 274-481 (500)
399 KOG0062 ATPase component of AB 99.3 1.5E-12 3.4E-17 142.7 3.8 163 37-212 81-254 (582)
400 cd03240 ABC_Rad50 The catalyti 99.3 6.7E-13 1.4E-17 131.6 0.9 141 67-216 24-186 (204)
401 COG4178 ABC-type uncharacteriz 99.3 2.9E-12 6.3E-17 144.4 5.7 160 37-214 393-575 (604)
402 PLN03046 D-glycerate 3-kinase; 99.2 3.3E-11 7.2E-16 131.1 11.5 108 63-170 210-343 (460)
403 KOG0065 Pleiotropic drug resis 99.2 1.5E-11 3.2E-16 146.6 9.0 158 47-214 802-991 (1391)
404 PRK06547 hypothetical protein; 99.2 3.1E-11 6.8E-16 117.2 9.2 123 62-198 12-139 (172)
405 cd03274 ABC_SMC4_euk Eukaryoti 99.2 3.7E-12 7.9E-17 127.2 -1.0 158 45-230 13-202 (212)
406 COG1245 Predicted ATPase, RNas 99.1 3.6E-11 7.8E-16 130.7 5.6 143 58-216 363-519 (591)
407 PLN02796 D-glycerate 3-kinase 99.1 1.2E-10 2.6E-15 124.3 8.6 121 50-170 80-231 (347)
408 KOG0060 Long-chain acyl-CoA tr 99.1 5.5E-11 1.2E-15 132.1 5.7 163 38-216 435-630 (659)
409 KOG0927 Predicted transporter 99.1 5.9E-11 1.3E-15 131.1 5.4 164 38-216 77-282 (614)
410 cd03273 ABC_SMC2_euk Eukaryoti 99.1 6.2E-12 1.3E-16 127.7 -2.6 140 67-214 27-230 (251)
411 TIGR00318 cyaB adenylyl cyclas 99.1 6.4E-10 1.4E-14 108.2 9.6 132 240-373 32-174 (174)
412 COG3845 ABC-type uncharacteriz 99.0 1.7E-09 3.6E-14 118.9 13.4 192 35-240 256-486 (501)
413 PRK00349 uvrA excinuclease ABC 99.0 2.5E-10 5.4E-15 135.6 7.2 114 120-245 792-926 (943)
414 cd03283 ABC_MutS-like MutS-lik 99.0 7.9E-11 1.7E-15 116.6 2.5 138 50-217 15-152 (199)
415 KOG0927 Predicted transporter 99.0 2.7E-10 5.8E-15 126.0 5.6 163 37-216 390-569 (614)
416 cd03276 ABC_SMC6_euk Eukaryoti 99.0 2E-10 4.3E-15 113.6 3.2 151 52-217 12-180 (198)
417 KOG0066 eIF2-interacting prote 98.9 7.2E-10 1.6E-14 119.9 5.3 157 39-212 589-760 (807)
418 cd03280 ABC_MutS2 MutS2 homolo 98.9 5.8E-10 1.3E-14 109.8 3.9 133 52-214 17-152 (200)
419 KOG0064 Peroxisomal long-chain 98.9 3.8E-10 8.3E-15 124.4 1.8 148 47-212 493-668 (728)
420 COG2401 ABC-type ATPase fused 98.9 5.4E-10 1.2E-14 120.5 2.7 158 45-215 392-570 (593)
421 TIGR00630 uvra excinuclease AB 98.9 2.1E-09 4.6E-14 127.5 7.3 90 141-242 823-921 (924)
422 PRK00635 excinuclease ABC subu 98.9 8.1E-10 1.8E-14 137.1 3.4 92 141-244 804-904 (1809)
423 cd03275 ABC_SMC1_euk Eukaryoti 98.9 6.8E-10 1.5E-14 112.8 1.8 64 145-215 154-221 (247)
424 KOG2355 Predicted ABC-type tra 98.8 6.3E-09 1.4E-13 104.1 8.0 190 36-238 13-229 (291)
425 KOG0065 Pleiotropic drug resis 98.8 3.8E-09 8.2E-14 126.5 7.4 182 48-241 127-346 (1391)
426 PRK08233 hypothetical protein; 98.8 1.5E-08 3.3E-13 96.5 10.2 113 65-200 3-121 (182)
427 KOG2702 Predicted panthothenat 98.8 1.7E-08 3.6E-13 102.2 8.5 136 67-203 121-284 (323)
428 cd00820 PEPCK_HprK Phosphoenol 98.8 1.1E-08 2.4E-13 92.7 6.1 69 49-128 2-77 (107)
429 cd03243 ABC_MutS_homologs The 98.7 4.1E-09 8.9E-14 103.8 -0.0 131 55-217 22-155 (202)
430 COG1245 Predicted ATPase, RNas 98.6 8.7E-09 1.9E-13 112.5 1.5 158 59-231 97-287 (591)
431 KOG0066 eIF2-interacting prote 98.6 2.1E-08 4.5E-13 108.8 3.0 162 38-214 266-470 (807)
432 KOG0062 ATPase component of AB 98.6 4.2E-08 9.1E-13 108.4 4.9 160 41-217 367-543 (582)
433 cd03282 ABC_MSH4_euk MutS4 hom 98.6 2.5E-08 5.4E-13 99.5 2.9 138 48-217 15-155 (204)
434 cd03277 ABC_SMC5_euk Eukaryoti 98.6 4.7E-08 1E-12 97.9 4.3 70 141-217 121-196 (213)
435 cd03227 ABC_Class2 ABC-type Cl 98.5 5.8E-08 1.2E-12 92.7 2.9 126 55-217 14-145 (162)
436 cd03285 ABC_MSH2_euk MutS2 hom 98.5 6.1E-08 1.3E-12 97.8 2.2 133 48-217 16-156 (222)
437 cd03239 ABC_SMC_head The struc 98.5 5.7E-08 1.2E-12 94.7 1.7 123 67-216 24-161 (178)
438 cd03284 ABC_MutS1 MutS1 homolo 98.4 7.3E-08 1.6E-12 96.7 2.2 131 49-215 18-155 (216)
439 PRK13477 bifunctional pantoate 98.4 4.4E-07 9.6E-12 102.0 7.7 154 42-204 265-447 (512)
440 KOG3308 Uncharacterized protei 98.4 7.2E-07 1.6E-11 89.0 7.7 124 64-191 3-142 (225)
441 PF13207 AAA_17: AAA domain; P 98.4 4.7E-07 1E-11 80.9 5.7 113 67-206 1-119 (121)
442 TIGR02858 spore_III_AA stage I 98.3 4.6E-07 9.9E-12 94.4 4.4 109 66-213 112-229 (270)
443 TIGR03238 dnd_assoc_3 dnd syst 98.3 4.4E-07 9.4E-12 100.8 3.8 48 49-101 19-68 (504)
444 cd03281 ABC_MSH5_euk MutS5 hom 98.3 6.6E-07 1.4E-11 89.7 4.7 122 67-217 31-158 (213)
445 cd02022 DPCK Dephospho-coenzym 98.2 6.3E-07 1.4E-11 87.0 3.4 141 67-217 1-158 (179)
446 COG4240 Predicted kinase [Gene 98.2 3.6E-06 7.8E-11 85.6 8.6 108 61-169 46-174 (300)
447 PRK08118 topology modulation p 98.2 1.5E-06 3.3E-11 83.9 5.7 106 67-207 3-109 (167)
448 TIGR01069 mutS2 MutS2 family p 98.2 6.5E-07 1.4E-11 105.2 3.3 143 42-216 296-448 (771)
449 PRK07261 topology modulation p 98.2 3.9E-06 8.5E-11 81.2 8.1 109 67-210 2-112 (171)
450 PRK00081 coaE dephospho-CoA ki 98.2 1.6E-06 3.5E-11 85.4 4.2 141 65-215 2-159 (194)
451 PRK14734 coaE dephospho-CoA ki 98.2 2.2E-06 4.7E-11 85.2 5.1 145 65-217 1-162 (200)
452 cd01130 VirB11-like_ATPase Typ 98.1 4.1E-06 8.8E-11 81.8 6.1 73 55-130 18-97 (186)
453 TIGR00017 cmk cytidylate kinas 98.1 3.2E-06 7E-11 85.2 4.3 56 159-216 121-178 (217)
454 PRK14730 coaE dephospho-CoA ki 98.1 1.7E-06 3.7E-11 85.6 2.3 141 66-215 2-160 (195)
455 PRK14731 coaE dephospho-CoA ki 98.0 4.3E-06 9.3E-11 83.4 4.6 54 158-215 115-168 (208)
456 PRK06217 hypothetical protein; 98.0 1.1E-05 2.3E-10 78.4 7.2 105 66-200 2-107 (183)
457 COG1437 CyaB Adenylate cyclase 98.0 2.7E-05 5.8E-10 76.4 9.7 128 242-372 34-175 (178)
458 PRK14732 coaE dephospho-CoA ki 98.0 3.3E-06 7.2E-11 83.8 3.3 140 67-216 1-157 (196)
459 cd03241 ABC_RecN RecN ATPase i 98.0 4.5E-06 9.8E-11 86.5 4.1 62 146-215 170-235 (276)
460 PRK14733 coaE dephospho-CoA ki 98.0 4.8E-06 1E-10 83.5 3.6 142 65-217 6-165 (204)
461 PRK00635 excinuclease ABC subu 97.9 7.1E-06 1.5E-10 103.0 5.0 95 142-244 1695-1794(1809)
462 cd03287 ABC_MSH3_euk MutS3 hom 97.9 8.8E-06 1.9E-10 82.5 4.6 133 49-216 18-157 (222)
463 PRK09825 idnK D-gluconate kina 97.9 1.4E-05 3.1E-10 77.8 5.7 62 61-128 2-69 (176)
464 PF01121 CoaE: Dephospho-CoA k 97.9 1.5E-05 3.2E-10 78.5 5.7 142 66-217 1-159 (180)
465 cd02020 CMPK Cytidine monophos 97.9 1.7E-05 3.6E-10 72.8 5.6 122 67-216 1-123 (147)
466 cd02019 NK Nucleoside/nucleoti 97.9 2.1E-05 4.6E-10 65.1 5.5 23 67-89 1-23 (69)
467 PRK07196 fliI flagellum-specif 97.9 2.2E-05 4.8E-10 86.8 6.7 78 49-130 143-237 (434)
468 smart00534 MUTSac ATPase domai 97.8 5.2E-06 1.1E-10 81.1 0.3 45 164-214 78-123 (185)
469 KOG0063 RNAse L inhibitor, ABC 97.7 3E-05 6.5E-10 84.9 5.2 154 50-216 350-520 (592)
470 KOG2878 Predicted kinase [Gene 97.7 6.7E-05 1.5E-09 75.3 6.5 107 64-170 30-164 (282)
471 PRK09518 bifunctional cytidyla 97.7 6.5E-05 1.4E-09 87.9 7.2 53 160-216 139-191 (712)
472 PTZ00451 dephospho-CoA kinase; 97.7 3.9E-05 8.4E-10 79.0 4.5 54 159-216 118-172 (244)
473 TIGR02322 phosphon_PhnN phosph 97.6 0.00014 3.1E-09 69.8 7.7 24 67-90 3-26 (179)
474 COG1102 Cmk Cytidylate kinase 97.6 2.3E-05 4.9E-10 76.2 1.9 124 67-216 2-126 (179)
475 TIGR01360 aden_kin_iso1 adenyl 97.6 9.5E-05 2.1E-09 70.8 5.9 24 66-89 4-27 (188)
476 TIGR00152 dephospho-CoA kinase 97.6 3.1E-05 6.6E-10 75.5 2.1 142 67-217 1-160 (188)
477 PRK03333 coaE dephospho-CoA ki 97.6 4.4E-05 9.6E-10 83.5 3.5 142 65-216 1-159 (395)
478 PLN02422 dephospho-CoA kinase 97.6 5.2E-05 1.1E-09 77.6 3.7 143 66-216 2-161 (232)
479 COG0283 Cmk Cytidylate kinase 97.6 5.6E-05 1.2E-09 76.4 3.6 56 159-216 121-178 (222)
480 cd03286 ABC_MSH6_euk MutS6 hom 97.6 4.8E-05 1.1E-09 76.9 3.2 39 48-89 16-54 (218)
481 PRK06762 hypothetical protein; 97.5 0.00021 4.5E-09 67.8 7.3 33 65-98 2-34 (166)
482 COG0178 UvrA Excinuclease ATPa 97.5 3.7E-05 7.9E-10 89.4 2.4 89 144-244 820-917 (935)
483 PRK06002 fliI flagellum-specif 97.5 0.00016 3.4E-09 80.5 7.0 47 49-99 153-200 (450)
484 PRK13695 putative NTPase; Prov 97.5 2.1E-05 4.5E-10 75.7 -0.2 23 67-89 2-24 (174)
485 cd07890 CYTH-like_AC_IV-like A 97.5 0.00038 8.2E-09 67.2 8.1 126 240-369 30-168 (169)
486 PRK00409 recombination and DNA 97.4 0.00012 2.5E-09 86.7 4.2 145 42-217 301-454 (782)
487 PRK06995 flhF flagellar biosyn 97.4 0.0003 6.5E-09 79.0 6.6 36 51-89 245-280 (484)
488 PRK11545 gntK gluconate kinase 97.3 0.00015 3.3E-09 69.7 3.6 55 71-128 1-61 (163)
489 PRK06793 fliI flagellum-specif 97.3 0.00012 2.5E-09 81.2 3.1 48 49-100 144-192 (432)
490 PF13555 AAA_29: P-loop contai 97.3 0.00026 5.6E-09 58.5 4.2 31 56-89 16-47 (62)
491 PRK04040 adenylate kinase; Pro 97.3 0.00033 7.1E-09 69.2 5.4 36 65-100 2-38 (188)
492 TIGR02788 VirB11 P-type DNA tr 97.3 0.00019 4E-09 76.0 3.7 43 55-100 137-180 (308)
493 PRK00300 gmk guanylate kinase; 97.3 0.00022 4.8E-09 69.8 3.9 28 60-90 3-30 (205)
494 PTZ00132 GTP-binding nuclear p 97.3 0.0002 4.4E-09 70.7 3.7 29 152-180 158-191 (215)
495 cd01136 ATPase_flagellum-secre 97.3 0.00042 9.1E-09 74.3 6.3 48 49-100 57-105 (326)
496 PRK14737 gmk guanylate kinase; 97.2 0.00093 2E-08 65.9 7.8 27 65-91 4-30 (186)
497 PRK03846 adenylylsulfate kinas 97.2 0.00032 7E-09 69.1 4.6 50 65-114 24-78 (198)
498 PRK10078 ribose 1,5-bisphospho 97.2 0.00024 5.1E-09 69.3 3.5 23 67-89 4-26 (186)
499 PRK10416 signal recognition pa 97.2 0.0004 8.7E-09 74.1 5.3 33 66-98 115-148 (318)
500 PRK07721 fliI flagellum-specif 97.2 0.00036 7.7E-09 77.6 5.0 48 49-100 146-194 (438)
No 1
>PLN02318 phosphoribulokinase/uridine kinase
Probab=100.00 E-value=4.2e-157 Score=1292.06 Aligned_cols=612 Identities=82% Similarity=1.216 Sum_probs=578.9
Q ss_pred CCCCCCcccchhhhhhhhhcchhhhcccCCccccceeeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHH
Q 038045 1 MAQDSSNAESHHKKSVLLKDQVRLVKRKDSDRHEIVPIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTI 80 (621)
Q Consensus 1 ~~~~~~~~~~~~~~~~l~~~~~~l~~rk~~k~~~~~~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKST 80 (621)
||||+++++|||+|.||++||++|+++|++++|+++++++.++|++|++++++.+++..+...++++|||+|||||||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~sfd~g~~~~ira~qlL~~~~~~riIIGIaGpSGSGKTT 80 (656)
T PLN02318 1 MAQDTSGAESPRRRHGLLKDQVQLVKRKDSDRYEIVPIQDPLSFEKGFFVVIRACQLLAQKNDGIILVGVAGPSGAGKTV 80 (656)
T ss_pred CCcccccCcCcccccchhHHhhhheeeccCCceEEEeCCCccccccchhhhhHHHHHHHhcCCCeEEEEEECCCCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999988877789999999999999999
Q ss_pred HHHHHHhhCCCeeEEEECCcccccccccccCCCCcccccchHHHHHHHHhcCCCccCccccccccCccCCceeecCCccE
Q 038045 81 FTEKILNFMPSIAVISMDNYNDSSRVVDGNFDDPRLTDYDTLLENVRDLREGKPVQVPIYDFESSSRTGYRTVEVPSSRI 160 (621)
Q Consensus 81 Llr~LagLlP~sGvI~lDg~~~~~R~Ig~vfQdp~l~d~~tV~enL~~L~~gk~V~~p~yd~~~~~rsggq~qrVa~ArV 160 (621)
|+++|++.+|.+|.|++|||+...+.++++||+|.++++.++.++|..++.++.+..|.||+..+.+.+.....++.+++
T Consensus 81 LAk~LaglLp~vgvIsmDdy~~~~~~i~~nfD~P~a~D~d~L~enL~~Lr~GksV~iPiYDf~t~~r~~~~~i~v~p~~V 160 (656)
T PLN02318 81 FTEKVLNFMPSIAVISMDNYNDSSRIIDGNFDDPRLTDYDTLLDNIHDLKAGKSVQVPIYDFKSSSRVGYRTLEVPSSRI 160 (656)
T ss_pred HHHHHHhhCCCcEEEEEcceecchhhhCccCCChhhcchhHHHHHHHHHhCCCceecCccccccCcccCCceeecCCCcE
Confidence 99999999988999999999766666788999999999999999999999999999999999988877666677889999
Q ss_pred EEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHh----cccc---------------
Q 038045 161 VIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETS----AKNL--------------- 221 (621)
Q Consensus 161 LIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~----~R~v--------------- 221 (621)
+|+||.|++++++++.+|++||++++.+.++.+|+.||+.++|.+++.+.++|.... ...+
T Consensus 161 VIVEGIyaL~~~Lr~LlDlkIFVDtdvDirL~RRI~RD~~eRGrs~EsVi~q~~~~VkP~y~~FIeP~kk~ADIII~n~f 240 (656)
T PLN02318 161 VIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIVNKF 240 (656)
T ss_pred EEEechhhccHhHHhhCCEEEEEcCCccHHHHHHHHHHHHHhCCCHHHHHHHHHHhhcchHHHHhCcchhcceEEEecCC
Confidence 999999999999999999999999999999999999999999999999999986652 1111
Q ss_pred -------------------ccchhhhcCCCCceeeccCceeEEecCCCCCcccccceeEEeecCCeeEEEeeeeecCCCe
Q 038045 222 -------------------SVDQIKAVYPEGHTETMEQTYDIYLLPPGEDPESCQSYLRMRNKDGKYSLMFEEWVTDIPF 282 (621)
Q Consensus 222 -------------------~~~d~iavl~eg~Ie~~~~~aDIYi~P~~~~~e~~~d~Irvr~~~g~~~L~f~e~i~d~~f 282 (621)
..+++..++.+...+.+.++.|||+.||+.+++.+.+|||||+++|+|+|+|.||++|+||
T Consensus 241 ~P~~g~~np~~Ilk~~~~~~~~~i~~~L~~~~~~~~~~~~DiYl~~P~~d~~~~~e~LRvR~~~Gk~~Ltyke~i~dgp~ 320 (656)
T PLN02318 241 NPFSGFQNPTYILKSSRSVTVEQIKAVLSEDHTETTEETYDIYLLPPGEDPETCQSYLRMRNRDGKYSLMFEEWVTDEPF 320 (656)
T ss_pred CCCCCCCCCeEEecCCccccHHHHHHHhhhccccccceeeEEEecCCCCCchhccceEEEEecCCEEEEEEecccccCCe
Confidence 1122233344444556678999999999999989999999999999999999999999999
Q ss_pred EeccceeeEEEeeeecceeccCceEEEEEeecceeeeCCCceEEehhhHhhcCceeEEEecccHHHHHHHHHHhCCCCCc
Q 038045 283 VISPRITFEVSVRLLGGLMALGYTIATILKRSSHVFCDDRGVCVKIDWLEQLNRQYIQVQGKDRLIVKNVAEQLGLEGSY 362 (621)
Q Consensus 283 Ii~P~~~FeV~~~~LgGll~lgy~i~~~~~~~~~i~~d~~gv~i~v~~le~l~~~~i~i~g~~r~~V~~~~~~L~l~g~~ 362 (621)
|++|+.+|||++.++|||++|||++++++++++++|++|+ +++++||||+||++||||+|++|+.|.++|++|||+|+|
T Consensus 321 ii~pk~~fEv~v~~~~gL~aLGy~~~a~vkk~r~iy~~g~-v~i~lD~ve~Lg~~FvqIeg~~r~~V~~~a~kLGl~g~~ 399 (656)
T PLN02318 321 IISPRITFEVSVRLLGGLMALGYTIATILKRSSHVFSDDK-VCVKIDWLEQLNRKYVQVQGKDRLVVKDVAEQLGLEGSY 399 (656)
T ss_pred ecCcceeEEEeeehHhHHHHcCCceEEEEEEEEEEEecCC-EEEEeehhhccCCeeEEEehhHHHHHHHHHHHcCCCCCc
Confidence 9999999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHhhhhhhhcCChhhhhccccCcccccCchhhhhhhhhhHHHhhhhcccCCCCcccccCCCCCccccccc
Q 038045 363 VPRTYIEQIQLEKLVNEVMALPEDLKTKLSLDEDLVSSPKEALSRASASRVAMRNKNLRSGMSHSYSTQGDKNLSKLTGY 442 (621)
Q Consensus 363 i~~~y~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (621)
||+|||||||||||++++|+||||||+|||+|+++|+||||||+|+|+|| |||++++|||||||+|||||++||+++
T Consensus 400 i~~SYlE~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (656)
T PLN02318 400 IPRTYIEQIQLEKLVNEVMALPEDLKTKLSLDDDLVSSPKEALSRASADR---RNKNLKSGLSHSYSTQRDKNLSKLTGL 476 (656)
T ss_pred ccccHHHHHHHHHhHHHHhhccHHhhhhcccccccccCcHHHhhhhhhhh---hhhhcccCccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred cccccccCCCCCCCccccccccchhhHHHHHhhhhhhhhhHhhHHHHHHhhhc-cCCCcccccccccccccCCCCCccee
Q 038045 443 VMNDRRFDGRSVESSATLASHGVITHLSEQISSLTDRMDDFTTHIEELNAKLT-KKNSSSQQNMALPAEACNGSAPTSFF 521 (621)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (621)
++++||||+|++++||++ |||+|||||||||+|||||||||||||||||||+ +|+||||||+|+|+|+||||+|||||
T Consensus 477 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (656)
T PLN02318 477 AVTNRRFDERNSESPAAL-NQGAITQLSEQISSLNERMDEFTSRIEELNSKLSIKKNSPSQQNLALQAEACNGSAPTSYF 555 (656)
T ss_pred cccccccCCCCCCCchhh-ccchHHHHHHhhcchhhhhHHHHHHHHHHhhccccccCChhhhhhhccccccCCCCcchhh
Confidence 999999999999999999 9999999999999999999999999999999999 88999999999999999999999999
Q ss_pred eccCCCCCc----ccCCCCCcccccccchHHHHhhhhhhhhHHHHhHhhHHHHHHHhhcccccccccccCCCCCCCCCCc
Q 038045 522 ISSLGNGSL----MPNSSSSSQLAKESPLMDEISGIVRGQRQVMHQLDNLSNLLHESMGERSHQGRKTKKSNWPDAEPFK 597 (621)
Q Consensus 522 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (621)
++|+||||| ||+||||+||+||+||||||..++|||||||||||||+|||||++|+|+++. .+++.+.++++..
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 633 (656)
T PLN02318 556 VSGLGNGSLTGSILPLSSSSSQLAKESPLMEEILGIARGQRQVMHQLDNLSNLLHESLGERSGRN--RRNSRLLNVDSSQ 633 (656)
T ss_pred hccCCCcccccccccccccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc--hhhccccccCccc
Confidence 999999999 9999999999999999999999999999999999999999999999999554 5667788999999
Q ss_pred ccceeeecccceeeeeeecccc
Q 038045 598 VPLIITLAAGGVGIFLFKKFLT 619 (621)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~ 619 (621)
+|||++||+||+|+|+|+++.+
T Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~ 655 (656)
T PLN02318 634 LPLILSLAIGGIGIFLFKRLKN 655 (656)
T ss_pred chHHHHHHHhhhhhhhhhhhhc
Confidence 9999999999999999999875
No 2
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.2e-37 Score=322.98 Aligned_cols=206 Identities=17% Similarity=0.204 Sum_probs=181.7
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcc-----ccccccccc
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYN-----DSSRVVDGN 110 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~-----~~~R~Ig~v 110 (621)
...++++..||...+++++||++++|| +++|+||||||||||+|+|||++ |++|.|.+||.. +.+|.++||
T Consensus 4 i~l~~v~K~yg~~~~l~~i~l~i~~Ge---f~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamV 80 (338)
T COG3839 4 LELKNVRKSFGSFEVLKDVNLDIEDGE---FVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMV 80 (338)
T ss_pred EEEeeeEEEcCCceeeecceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEE
Confidence 346788888998779999999999999 99999999999999999999999 999999999973 456899999
Q ss_pred CCCCcccccchHHHHHHHHhcCCCcc----------------C-ccccccccCccCCceeecCCccEEEEecceeccccc
Q 038045 111 FDDPRLTDYDTLLENVRDLREGKPVQ----------------V-PIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKL 173 (621)
Q Consensus 111 fQdp~l~d~~tV~enL~~L~~gk~V~----------------~-p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp 173 (621)
||++++||++||++|+++.++...+. + ...++.+.++||||+|||+.+|+++.+|.++|+|||
T Consensus 81 FQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEP 160 (338)
T COG3839 81 FQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEP 160 (338)
T ss_pred eCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCc
Confidence 99999999999999999965432211 1 235667889999999999999999999999999999
Q ss_pred cCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEEecCCCCCc
Q 038045 174 RPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIYLLPPGEDP 253 (621)
Q Consensus 174 ~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIYi~P~~~~~ 253 (621)
+++||.+++. .+...+++.+++.|.|.++||||+.|++ +++|++++|++|.+.|.+++.++|-.|.+.+.
T Consensus 161 lSnLDa~lR~------~mr~ei~~lh~~l~~T~IYVTHDq~EAm----tladri~Vm~~G~i~Q~g~p~ely~~P~n~fV 230 (338)
T COG3839 161 LSNLDAKLRV------LMRSEIKKLHERLGTTTIYVTHDQVEAM----TLADRIVVMNDGRIQQVGTPLELYERPANLFV 230 (338)
T ss_pred hhHhhHHHHH------HHHHHHHHHHHhcCCcEEEEcCCHHHHH----hhCCEEEEEeCCeeeecCChHHHhhCccchhh
Confidence 9999987644 4556677777788999999999999999 99999999999999999999999999999876
Q ss_pred cc
Q 038045 254 ES 255 (621)
Q Consensus 254 e~ 255 (621)
..
T Consensus 231 A~ 232 (338)
T COG3839 231 AG 232 (338)
T ss_pred hh
Confidence 43
No 3
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-36 Score=320.78 Aligned_cols=275 Identities=19% Similarity=0.176 Sum_probs=209.1
Q ss_pred eecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcc-----cccccccccC
Q 038045 38 IQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYN-----DSSRVVDGNF 111 (621)
Q Consensus 38 v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~-----~~~R~Ig~vf 111 (621)
..++++..||.+.+|+++||+|++|| +++|+|||||||||++|+|+|+. |+.|.|.+||.. +.+|.+||||
T Consensus 7 ~i~~v~k~yg~~~av~~isl~i~~Ge---f~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VF 83 (352)
T COG3842 7 EIRNVSKSFGDFTAVDDISLDIKKGE---FVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVF 83 (352)
T ss_pred EEEeeeeecCCeeEEecceeeecCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceee
Confidence 45678888999999999999999999 99999999999999999999999 999999999973 4568999999
Q ss_pred CCCcccccchHHHHHHHHhc-CCC----------------ccCcc-ccccccCccCCceeecCCccEEEEecceeccccc
Q 038045 112 DDPRLTDYDTLLENVRDLRE-GKP----------------VQVPI-YDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKL 173 (621)
Q Consensus 112 Qdp~l~d~~tV~enL~~L~~-gk~----------------V~~p~-yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp 173 (621)
|++++|||+||.+||++.++ .+. +.+.. .++.++++||||+|||+.||+|+.+|.++|+|||
T Consensus 84 Q~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEP 163 (352)
T COG3842 84 QSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEP 163 (352)
T ss_pred cCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCc
Confidence 99999999999999999554 211 12222 3455789999999999999999999999999999
Q ss_pred cCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEEecCCCCCc
Q 038045 174 RPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIYLLPPGEDP 253 (621)
Q Consensus 174 ~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIYi~P~~~~~ 253 (621)
+++||.+++ .++...+++..++.|.|.++||||+++++ +++|++++|.+|.|+|.+++.++|..|.+.+.
T Consensus 164 lSaLD~kLR------~~mr~Elk~lq~~~giT~i~VTHDqeEAl----~msDrI~Vm~~G~I~Q~gtP~eiY~~P~~~fV 233 (352)
T COG3842 164 LSALDAKLR------EQMRKELKELQRELGITFVYVTHDQEEAL----AMSDRIAVMNDGRIEQVGTPEEIYERPATRFV 233 (352)
T ss_pred ccchhHHHH------HHHHHHHHHHHHhcCCeEEEEECCHHHHh----hhccceEEccCCceeecCCHHHHhhCcchHHH
Confidence 999998753 35667777778888999999999999999 99999999999999999999999999999876
Q ss_pred ccccceeEEeecCCeeEEEeeeeecCCCeEeccceeeEEEeeeecceeccCceEEEEEeecceeee-CCC--ceEEehhh
Q 038045 254 ESCQSYLRMRNKDGKYSLMFEEWVTDIPFVISPRITFEVSVRLLGGLMALGYTIATILKRSSHVFC-DDR--GVCVKIDW 330 (621)
Q Consensus 254 e~~~d~Irvr~~~g~~~L~f~e~i~d~~fIi~P~~~FeV~~~~LgGll~lgy~i~~~~~~~~~i~~-d~~--gv~i~v~~ 330 (621)
... + |..++.-..+..... ..-.......... .+....|..+...++|+...+. ++. .+...|+.
T Consensus 234 A~F---i------G~~N~l~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~iRPE~i~l~~~~~~~~~~g~v~~ 301 (352)
T COG3842 234 ADF---I------GESNIFEGKVVERLG--AIGGAVGGLGVVA-PGAIPEGGAVTVAIRPERIRLGPEGPGDSLSGTVES 301 (352)
T ss_pred HHH---h------Ccceeeeeeeecccc--cccceeecccccc-cccccCCceeEEEEChhheeeccCCCCceEEEEEEE
Confidence 443 2 111111111111000 0000000111111 2223455677788888884333 232 25677778
Q ss_pred HhhcCce
Q 038045 331 LEQLNRQ 337 (621)
Q Consensus 331 le~l~~~ 337 (621)
+.++|..
T Consensus 302 ~~~~G~~ 308 (352)
T COG3842 302 VVYLGSI 308 (352)
T ss_pred EEEcCCc
Confidence 8888754
No 4
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9e-34 Score=292.74 Aligned_cols=242 Identities=18% Similarity=0.194 Sum_probs=199.4
Q ss_pred cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcc----------cccccccccCCCCcc
Q 038045 48 FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYN----------DSSRVVDGNFDDPRL 116 (621)
Q Consensus 48 ~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~----------~~~R~Ig~vfQdp~l 116 (621)
...++++|||+|++|+ ++||+|.||||||||+|||.++. |++|.|.+||.. ..++.+||+||+|++
T Consensus 18 ~~~al~~vsL~I~~Ge---I~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnL 94 (339)
T COG1135 18 TVTALDDVSLEIPKGE---IFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNL 94 (339)
T ss_pred ceeeeccceEEEcCCc---EEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccc
Confidence 4789999999999999 99999999999999999999999 999999999952 234689999999999
Q ss_pred cccchHHHHHHHHhcCCC----------------ccCc-cccccccCccCCceeecCCccEEEEecceeccccccCCCCe
Q 038045 117 TDYDTLLENVRDLREGKP----------------VQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDL 179 (621)
Q Consensus 117 ~d~~tV~enL~~L~~gk~----------------V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDl 179 (621)
+...||++|+++.++-.. +.++ ..+..+.++||||+|+|++||+++.+|.++|+||+++.|||
T Consensus 95 LssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP 174 (339)
T COG1135 95 LSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDP 174 (339)
T ss_pred cccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCCh
Confidence 999999999999663211 1222 13344789999999999999999999999999999999998
Q ss_pred eEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEEecCCCCCccc----
Q 038045 180 RVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIYLLPPGEDPES---- 255 (621)
Q Consensus 180 kV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIYi~P~~~~~e~---- 255 (621)
. .....+..+.+..++.|.|+..|+|+|+.+. .+||++++|+.|.+...++..|+|..|...-...
T Consensus 175 ~------TT~sIL~LL~~In~~lglTIvlITHEm~Vvk----~ic~rVavm~~G~lvE~G~v~~vF~~Pk~~~t~~fi~~ 244 (339)
T COG1135 175 E------TTQSILELLKDINRELGLTIVLITHEMEVVK----RICDRVAVLDQGRLVEEGTVSEVFANPKHAITQEFIGE 244 (339)
T ss_pred H------HHHHHHHHHHHHHHHcCCEEEEEechHHHHH----HHhhhheEeeCCEEEEeccHHHhhcCcchHHHHHHHHh
Confidence 4 2335666666667788999999999999998 8999999999999999999999999887652111
Q ss_pred ------cccee-EEeec-CCeeEEEeeeeecCCCeEeccceeeEEEeeeecceec
Q 038045 256 ------CQSYL-RMRNK-DGKYSLMFEEWVTDIPFVISPRITFEVSVRLLGGLMA 302 (621)
Q Consensus 256 ------~~d~I-rvr~~-~g~~~L~f~e~i~d~~fIi~P~~~FeV~~~~LgGll~ 302 (621)
..+++ +.... +-.+.|.|.++.++.|++.+....|.|.+++|+|-+.
T Consensus 245 ~~~~~~~~~~~~~l~~~~~~~~rl~f~g~~~~~plis~~~~~~~v~~nIl~G~I~ 299 (339)
T COG1135 245 TLEIDLPEELLERLESGDGPLLRLTFTGESADQPLLSEVARRFGVDVNILSGNID 299 (339)
T ss_pred hccccCcHHHHhhhccCCceEEEEEecCccccchHHHHHHHHhCCceEEEecchh
Confidence 01111 11112 2358899999999999999988899999999998543
No 5
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=8.8e-33 Score=285.01 Aligned_cols=204 Identities=21% Similarity=0.225 Sum_probs=172.7
Q ss_pred eecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCc--------cccccccc
Q 038045 38 IQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNY--------NDSSRVVD 108 (621)
Q Consensus 38 v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~--------~~~~R~Ig 108 (621)
..++++..+|.+.++++|++.|+.|+ +++++||||||||||+|+|+|++ |+.|.|.++|. ....|++|
T Consensus 4 ~i~~~~~~~~~~~a~~di~l~i~~Ge---~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VG 80 (345)
T COG1118 4 RINNVKKRFGAFGALDDISLDIKSGE---LVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVG 80 (345)
T ss_pred eehhhhhhcccccccccceeeecCCc---EEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhccee
Confidence 44566777889999999999999999 99999999999999999999999 99999999997 23457899
Q ss_pred ccCCCCcccccchHHHHHHHHhcCC---C---------------ccCc-cccccccCccCCceeecCCccEEEEecceec
Q 038045 109 GNFDDPRLTDYDTLLENVRDLREGK---P---------------VQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYAL 169 (621)
Q Consensus 109 ~vfQdp~l~d~~tV~enL~~L~~gk---~---------------V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLL 169 (621)
++||++++|+++||.+||++..+-+ + +.+. .-+..+.++||||.|+|+.||++++||.++|
T Consensus 81 fvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLL 160 (345)
T COG1118 81 FVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLL 160 (345)
T ss_pred EEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEe
Confidence 9999999999999999999954221 0 1111 1334578999999999999999999999999
Q ss_pred cccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEEecCC
Q 038045 170 SEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIYLLPP 249 (621)
Q Consensus 170 lDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIYi~P~ 249 (621)
+|||+..||.++.- ++.+.+.+.+.+.|.|.+.|+||++++. ..+|++.+|.+|.|++.+++.++|-.|.
T Consensus 161 LDEPf~ALDa~vr~------~lr~wLr~~~~~~~~ttvfVTHD~eea~----~ladrvvvl~~G~Ieqvg~p~ev~~~P~ 230 (345)
T COG1118 161 LDEPFGALDAKVRK------ELRRWLRKLHDRLGVTTVFVTHDQEEAL----ELADRVVVLNQGRIEQVGPPDEVYDHPA 230 (345)
T ss_pred ecCCchhhhHHHHH------HHHHHHHHHHHhhCceEEEEeCCHHHHH----hhcceEEEecCCeeeeeCCHHHHhcCCC
Confidence 99999999987522 3333344444555999999999999998 8999999999999999999999999998
Q ss_pred CCCcc
Q 038045 250 GEDPE 254 (621)
Q Consensus 250 ~~~~e 254 (621)
+.+..
T Consensus 231 s~fV~ 235 (345)
T COG1118 231 SRFVA 235 (345)
T ss_pred cccee
Confidence 88764
No 6
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=3.3e-32 Score=269.80 Aligned_cols=200 Identities=20% Similarity=0.200 Sum_probs=169.1
Q ss_pred eecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc--------cccccc
Q 038045 38 IQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND--------SSRVVD 108 (621)
Q Consensus 38 v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~--------~~R~Ig 108 (621)
..++++..||.+.+|++||+++++|+ ++.|+||||||||||+|||+++. |+.|.|.+||... .++.+|
T Consensus 4 ~i~~l~K~fg~~~VLkgi~l~v~~Ge---vv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vG 80 (240)
T COG1126 4 EIKNLSKSFGDKEVLKGISLSVEKGE---VVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVG 80 (240)
T ss_pred EEEeeeEEeCCeEEecCcceeEcCCC---EEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcC
Confidence 45678889999999999999999999 99999999999999999999999 9999999999522 346799
Q ss_pred ccCCCCcccccchHHHHHHHHh---cC--------------CCccCc-cccccccCccCCceeecCCccEEEEecceecc
Q 038045 109 GNFDDPRLTDYDTLLENVRDLR---EG--------------KPVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYALS 170 (621)
Q Consensus 109 ~vfQdp~l~d~~tV~enL~~L~---~g--------------k~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLl 170 (621)
||||++++|||+|+.+|+.... .+ ..+.+. ..+..+.++||||+|||++||++.++|.++|.
T Consensus 81 mVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLF 160 (240)
T COG1126 81 MVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLF 160 (240)
T ss_pred eecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEee
Confidence 9999999999999999997521 11 112222 24556789999999999999999999999999
Q ss_pred ccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEEecCCC
Q 038045 171 EKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIYLLPPG 250 (621)
Q Consensus 171 DEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIYi~P~~ 250 (621)
|||++.|||- -..-...+.+++.+.|+|.+.|||++.-+. ..+|++..|++|.+...+.+.++|-.|..
T Consensus 161 DEPTSALDPE-------lv~EVL~vm~~LA~eGmTMivVTHEM~FAr----~VadrviFmd~G~iie~g~p~~~f~~p~~ 229 (240)
T COG1126 161 DEPTSALDPE-------LVGEVLDVMKDLAEEGMTMIIVTHEMGFAR----EVADRVIFMDQGKIIEEGPPEEFFDNPKS 229 (240)
T ss_pred cCCcccCCHH-------HHHHHHHHHHHHHHcCCeEEEEechhHHHH----HhhheEEEeeCCEEEEecCHHHHhcCCCC
Confidence 9999999972 234445567778889999999999999887 78889999999988887888998877655
Q ss_pred C
Q 038045 251 E 251 (621)
Q Consensus 251 ~ 251 (621)
.
T Consensus 230 ~ 230 (240)
T COG1126 230 E 230 (240)
T ss_pred H
Confidence 4
No 7
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.97 E-value=2.2e-32 Score=276.24 Aligned_cols=205 Identities=19% Similarity=0.167 Sum_probs=179.2
Q ss_pred eecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcc-------cccccccc
Q 038045 38 IQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYN-------DSSRVVDG 109 (621)
Q Consensus 38 v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~-------~~~R~Ig~ 109 (621)
-.+++|+.|+.+.+++++||+|++|+ ++.++|||||||||++|+|.+++ |++|.|.+||.. ..+|.+||
T Consensus 3 ~~~nvsk~y~~~~av~~v~l~I~~ge---f~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 3 EFENVSKRYGNKKAVDDVNLTIEEGE---FLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred eeeeeehhcCCceeeeeeeEEecCCe---EEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 35678899999999999999999999 99999999999999999999999 999999999973 23578999
Q ss_pred cCCCCcccccchHHHHHHHHhcCC----------------CccCc---cccccccCccCCceeecCCccEEEEecceecc
Q 038045 110 NFDDPRLTDYDTLLENVRDLREGK----------------PVQVP---IYDFESSSRTGYRTVEVPSSRIVIIEGIYALS 170 (621)
Q Consensus 110 vfQdp~l~d~~tV~enL~~L~~gk----------------~V~~p---~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLl 170 (621)
+.|.-.+||++|+.+||+....-+ .+.++ ..++.++++||||+|||+.+|+++.+|.++|+
T Consensus 80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLM 159 (309)
T COG1125 80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLM 159 (309)
T ss_pred hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEee
Confidence 999999999999999999743211 12222 23456899999999999999999999999999
Q ss_pred ccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEEecCCC
Q 038045 171 EKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIYLLPPG 250 (621)
Q Consensus 171 DEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIYi~P~~ 250 (621)
|||+..||+.. ...+...+.+..++.|+|+++||||++|+. +.+|++++|++|.+.|.+++.+++..|.+
T Consensus 160 DEPFgALDpI~------R~~lQ~e~~~lq~~l~kTivfVTHDidEA~----kLadri~vm~~G~i~Q~~~P~~il~~Pan 229 (309)
T COG1125 160 DEPFGALDPIT------RKQLQEEIKELQKELGKTIVFVTHDIDEAL----KLADRIAVMDAGEIVQYDTPDEILANPAN 229 (309)
T ss_pred cCCccccChhh------HHHHHHHHHHHHHHhCCEEEEEecCHHHHH----hhhceEEEecCCeEEEeCCHHHHHhCccH
Confidence 99999999853 335667777778888999999999999998 99999999999999999999999989988
Q ss_pred CCccc
Q 038045 251 EDPES 255 (621)
Q Consensus 251 ~~~e~ 255 (621)
.+.+.
T Consensus 230 ~FV~~ 234 (309)
T COG1125 230 DFVED 234 (309)
T ss_pred HHHHH
Confidence 87654
No 8
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=5.5e-30 Score=258.80 Aligned_cols=184 Identities=18% Similarity=0.160 Sum_probs=157.6
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc--ccccccccCCC
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND--SSRVVDGNFDD 113 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~--~~R~Ig~vfQd 113 (621)
...++++..|+.+.||++|||++.+|| +|+|+||||||||||+|+|+|+. |+.|.|.++|... ....++|+||+
T Consensus 4 l~i~~v~~~f~~~~vl~~i~L~v~~GE---fvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~ 80 (248)
T COG1116 4 LEIEGVSKSFGGVEVLEDINLSVEKGE---FVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQE 80 (248)
T ss_pred EEEEeeEEEeCceEEeccceeEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEecc
Confidence 356678888899999999999999999 99999999999999999999999 9999999999743 34579999999
Q ss_pred CcccccchHHHHHHHHhcCC----------------CccCcc-ccccccCccCCceeecCCccEEEEecceeccccccCC
Q 038045 114 PRLTDYDTLLENVRDLREGK----------------PVQVPI-YDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPL 176 (621)
Q Consensus 114 p~l~d~~tV~enL~~L~~gk----------------~V~~p~-yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~ 176 (621)
+.+|||.|+.+|+.+..... .+.+.. -+..++++|||++|||+++|+++.+|.++|+|||+..
T Consensus 81 ~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgA 160 (248)
T COG1116 81 DALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGA 160 (248)
T ss_pred CcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcch
Confidence 99999999999998754321 122222 3455789999999999999999999999999999999
Q ss_pred CCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCC
Q 038045 177 LDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEG 233 (621)
Q Consensus 177 LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg 233 (621)
||... ...+...+.+.+++.+.|+..|||+++|+. ..+|++.+|..+
T Consensus 161 LDalT------R~~lq~~l~~lw~~~~~TvllVTHdi~EAv----~LsdRivvl~~~ 207 (248)
T COG1116 161 LDALT------REELQDELLRLWEETRKTVLLVTHDVDEAV----YLADRVVVLSNR 207 (248)
T ss_pred hhHHH------HHHHHHHHHHHHHhhCCEEEEEeCCHHHHH----hhhCEEEEecCC
Confidence 99743 345667788888899999999999999998 778887777654
No 9
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=4.3e-28 Score=258.69 Aligned_cols=203 Identities=17% Similarity=0.183 Sum_probs=168.5
Q ss_pred eecceeeee-CcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-----cccccccc
Q 038045 38 IQDPLSFEK-GFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-----SSRVVDGN 110 (621)
Q Consensus 38 v~~~lsf~~-G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-----~~R~Ig~v 110 (621)
..+++++.+ +.+.+|+++||++++|+ +++|+||||||||||+++|+|++ |+.|.|.++|... .++.++|+
T Consensus 5 ~i~~l~~~~~~~~~~l~~vsl~i~~Ge---~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 81 (356)
T PRK11650 5 KLQAVRKSYDGKTQVIKGIDLDVADGE---FIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMV 81 (356)
T ss_pred EEEeEEEEeCCCCEEEeeeeEEEcCCC---EEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 466788888 77889999999999999 99999999999999999999999 8999999999732 34689999
Q ss_pred CCCCcccccchHHHHHHHHhcCC----------------CccC-ccccccccCccCCceeecCCccEEEEecceeccccc
Q 038045 111 FDDPRLTDYDTLLENVRDLREGK----------------PVQV-PIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKL 173 (621)
Q Consensus 111 fQdp~l~d~~tV~enL~~L~~gk----------------~V~~-p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp 173 (621)
||++.+|+++|+.+|+.+..... .+.+ ...+..+.++|+|++|+++++|+++.+|.++|+|||
T Consensus 82 ~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP 161 (356)
T PRK11650 82 FQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEP 161 (356)
T ss_pred eCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 99999999999999998743211 0111 123455678999999999999999999999999999
Q ss_pred cCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEEecCCCCCc
Q 038045 174 RPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIYLLPPGEDP 253 (621)
Q Consensus 174 ~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIYi~P~~~~~ 253 (621)
++.||... ...+...+.+..++.|.|+++++|+..++. .++|++.+|.+|.+.+.+++.++|-.|.+.+.
T Consensus 162 ~s~LD~~~------r~~l~~~l~~l~~~~g~tii~vTHd~~ea~----~l~D~i~vl~~G~i~~~g~~~~~~~~p~~~~~ 231 (356)
T PRK11650 162 LSNLDAKL------RVQMRLEIQRLHRRLKTTSLYVTHDQVEAM----TLADRVVVMNGGVAEQIGTPVEVYEKPASTFV 231 (356)
T ss_pred cccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHH----HhCCEEEEEeCCEEEEECCHHHHHhCCccHHH
Confidence 99999742 223444444444556999999999999998 88999999999999999999999877765543
No 10
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.95 E-value=4.5e-28 Score=243.86 Aligned_cols=198 Identities=19% Similarity=0.202 Sum_probs=165.3
Q ss_pred eeecceeeeeCcEE----EEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc--------c
Q 038045 37 PIQDPLSFEKGFFV----VIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND--------S 103 (621)
Q Consensus 37 ~v~~~lsf~~G~~~----~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~--------~ 103 (621)
.-.+++++.|+.+. ++++|||++.+|+ ++||+|+||||||||+++|+|+. |+.|.|.+||... .
T Consensus 4 l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge---~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~ 80 (252)
T COG1124 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGE---TLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAF 80 (252)
T ss_pred EEEeceEEEecCCcchhhhhcceeEEecCCC---EEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhh
Confidence 34677888877766 9999999999999 99999999999999999999999 9999999999632 1
Q ss_pred cccccccCCCCc--ccccchHHHHHHHHhcC--------------CCccCc--cccccccCccCCceeecCCccEEEEec
Q 038045 104 SRVVDGNFDDPR--LTDYDTLLENVRDLREG--------------KPVQVP--IYDFESSSRTGYRTVEVPSSRIVIIEG 165 (621)
Q Consensus 104 ~R~Ig~vfQdp~--l~d~~tV~enL~~L~~g--------------k~V~~p--~yd~~~~~rsggq~qrVa~ArVLIvEG 165 (621)
.+.+.||||||. +.|..++.+.|...... +.+.+| .+++.++++||||.||++++|+++.+|
T Consensus 81 ~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~P 160 (252)
T COG1124 81 YRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEP 160 (252)
T ss_pred ccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCC
Confidence 356889999996 78999999998875432 123333 467778999999999999999999999
Q ss_pred ceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEE
Q 038045 166 IYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIY 245 (621)
Q Consensus 166 ~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIY 245 (621)
.++++|||+++||..+ ....+.-+....++++.|.++|+||+..+. .+||++++|+.|.+.......++.
T Consensus 161 klLIlDEptSaLD~si------Qa~IlnlL~~l~~~~~lt~l~IsHdl~~v~----~~cdRi~Vm~~G~ivE~~~~~~l~ 230 (252)
T COG1124 161 KLLILDEPTSALDVSV------QAQILNLLLELKKERGLTYLFISHDLALVE----HMCDRIAVMDNGQIVEIGPTEELL 230 (252)
T ss_pred CEEEecCchhhhcHHH------HHHHHHHHHHHHHhcCceEEEEeCcHHHHH----HHhhheeeeeCCeEEEeechhhhh
Confidence 9999999999999754 223444444445677999999999998887 899999999999999988888875
Q ss_pred ec
Q 038045 246 LL 247 (621)
Q Consensus 246 i~ 247 (621)
-.
T Consensus 231 ~~ 232 (252)
T COG1124 231 SH 232 (252)
T ss_pred cC
Confidence 44
No 11
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=4.1e-28 Score=258.48 Aligned_cols=205 Identities=19% Similarity=0.166 Sum_probs=171.2
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcc-----ccccccccc
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYN-----DSSRVVDGN 110 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~-----~~~R~Ig~v 110 (621)
...+++++.+|.+.+|+++||++++|+ +++|+||||||||||+++|+|++ |+.|.|.+||.. ..+|.++|+
T Consensus 7 l~~~~l~~~~~~~~~l~~isl~i~~Ge---~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 83 (351)
T PRK11432 7 VVLKNITKRFGSNTVIDNLNLTIKQGT---MVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMV 83 (351)
T ss_pred EEEEeEEEEECCeEEEeeeEEEEcCCC---EEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 456789999998899999999999999 99999999999999999999999 899999999973 234789999
Q ss_pred CCCCcccccchHHHHHHHHhcCC----------------CccCc-cccccccCccCCceeecCCccEEEEecceeccccc
Q 038045 111 FDDPRLTDYDTLLENVRDLREGK----------------PVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKL 173 (621)
Q Consensus 111 fQdp~l~d~~tV~enL~~L~~gk----------------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp 173 (621)
||++.+|+++|+.+|+.+..... .+.+. ..+..+.++|||++|+++.+|+++.+|.++|+|||
T Consensus 84 fQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP 163 (351)
T PRK11432 84 FQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEP 163 (351)
T ss_pred eCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 99999999999999999743210 11111 23455788999999999999999999999999999
Q ss_pred cCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEEecCCCCCc
Q 038045 174 RPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIYLLPPGEDP 253 (621)
Q Consensus 174 ~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIYi~P~~~~~ 253 (621)
++.||... ...+...+.+..++.|.|++.|+|+.+++. .++|++++|++|.+.+.+++.++|-.|.+.+.
T Consensus 164 ~s~LD~~~------r~~l~~~l~~l~~~~g~tii~vTHd~~e~~----~laD~i~vm~~G~i~~~g~~~~~~~~p~~~~~ 233 (351)
T PRK11432 164 LSNLDANL------RRSMREKIRELQQQFNITSLYVTHDQSEAF----AVSDTVIVMNKGKIMQIGSPQELYRQPASRFM 233 (351)
T ss_pred cccCCHHH------HHHHHHHHHHHHHhcCCEEEEEcCCHHHHH----HhCCEEEEEECCEEEEEcCHHHHHhCCCchHH
Confidence 99999743 223334444444456999999999999998 88999999999999999999999988877654
Q ss_pred c
Q 038045 254 E 254 (621)
Q Consensus 254 e 254 (621)
.
T Consensus 234 a 234 (351)
T PRK11432 234 A 234 (351)
T ss_pred H
Confidence 3
No 12
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.94 E-value=5.9e-28 Score=257.37 Aligned_cols=204 Identities=20% Similarity=0.170 Sum_probs=170.9
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-----cccccccc
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-----SSRVVDGN 110 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-----~~R~Ig~v 110 (621)
...+++++.++.+.+|+++||++++|+ +++|+||||||||||+++|+|++ |+.|.|.+||... .+|.++|+
T Consensus 5 l~~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v 81 (353)
T TIGR03265 5 LSIDNIRKRFGAFTALKDISLSVKKGE---FVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIV 81 (353)
T ss_pred EEEEEEEEEeCCeEEEEeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 346788888888899999999999999 99999999999999999999999 8999999999632 34679999
Q ss_pred CCCCcccccchHHHHHHHHhcCCC----------------ccC-ccccccccCccCCceeecCCccEEEEecceeccccc
Q 038045 111 FDDPRLTDYDTLLENVRDLREGKP----------------VQV-PIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKL 173 (621)
Q Consensus 111 fQdp~l~d~~tV~enL~~L~~gk~----------------V~~-p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp 173 (621)
||++.+|+++++.+|+.+...... +.+ +..+..+.++|+|++|+++.+|+++.+|.++|+|||
T Consensus 82 ~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP 161 (353)
T TIGR03265 82 FQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEP 161 (353)
T ss_pred eCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 999999999999999997532111 111 123456788999999999999999999999999999
Q ss_pred cCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEEecCCCCCc
Q 038045 174 RPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIYLLPPGEDP 253 (621)
Q Consensus 174 ~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIYi~P~~~~~ 253 (621)
++.||... ...+...+.+..++.|.|+++++|+.+++. .++|++++|++|.+.+.+.+.++|-.|.+.+.
T Consensus 162 ~s~LD~~~------r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~----~l~d~i~vl~~G~i~~~g~~~~~~~~p~~~~~ 231 (353)
T TIGR03265 162 LSALDARV------REHLRTEIRQLQRRLGVTTIMVTHDQEEAL----SMADRIVVMNHGVIEQVGTPQEIYRHPATPFV 231 (353)
T ss_pred cccCCHHH------HHHHHHHHHHHHHhcCCEEEEEcCCHHHHH----HhCCEEEEEECCEEEEEcCHHHHHhCCCCHHH
Confidence 99999742 223444454445556999999999999998 88999999999999999999999877776544
No 13
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.94 E-value=6.4e-28 Score=242.37 Aligned_cols=198 Identities=18% Similarity=0.194 Sum_probs=167.0
Q ss_pred ceeeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc----------c
Q 038045 35 IVPIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND----------S 103 (621)
Q Consensus 35 ~~~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~----------~ 103 (621)
...-.+++++.+|.+.++++|+|+|++|+ ++||+||||||||||+|.|.|++ |+.|.|.++|... .
T Consensus 7 ~~I~vr~v~~~fG~~~Ild~v~l~V~~Ge---i~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~i 83 (263)
T COG1127 7 PLIEVRGVTKSFGDRVILDGVDLDVPRGE---ILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEI 83 (263)
T ss_pred ceEEEeeeeeecCCEEEecCceeeecCCc---EEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHH
Confidence 34567889999999999999999999999 99999999999999999999999 9999999999732 2
Q ss_pred cccccccCCCCcccccchHHHHHHHHh-cC----------------CCccCc-c-ccccccCccCCceeecCCccEEEEe
Q 038045 104 SRVVDGNFDDPRLTDYDTLLENVRDLR-EG----------------KPVQVP-I-YDFESSSRTGYRTVEVPSSRIVIIE 164 (621)
Q Consensus 104 ~R~Ig~vfQdp~l~d~~tV~enL~~L~-~g----------------k~V~~p-~-yd~~~~~rsggq~qrVa~ArVLIvE 164 (621)
++++|++||+-++|+.++|+||+++.. +. +.+.++ . .+..+.++|||...|++.||++..+
T Consensus 84 r~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAiald 163 (263)
T COG1127 84 RKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALD 163 (263)
T ss_pred HhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcC
Confidence 357999999999999999999999843 22 122232 2 5667889999999999999999999
Q ss_pred cceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 165 GIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 165 G~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
|.++++|||++.||+.- +..-.++++++ ....|.|...|+||+.+.. ..+|+++++.++.+.-.+++.++
T Consensus 164 Pell~~DEPtsGLDPI~---a~~~~~LI~~L---~~~lg~T~i~VTHDl~s~~----~i~Drv~~L~~gkv~~~Gt~~el 233 (263)
T COG1127 164 PELLFLDEPTSGLDPIS---AGVIDELIREL---NDALGLTVIMVTHDLDSLL----TIADRVAVLADGKVIAEGTPEEL 233 (263)
T ss_pred CCEEEecCCCCCCCcch---HHHHHHHHHHH---HHhhCCEEEEEECChHHHH----hhhceEEEEeCCEEEEeCCHHHH
Confidence 99999999999999842 22112333333 3456999999999999998 89999999999999999999888
Q ss_pred E
Q 038045 245 Y 245 (621)
Q Consensus 245 Y 245 (621)
.
T Consensus 234 ~ 234 (263)
T COG1127 234 L 234 (263)
T ss_pred H
Confidence 4
No 14
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.94 E-value=8.1e-28 Score=258.28 Aligned_cols=205 Identities=20% Similarity=0.172 Sum_probs=171.7
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-----cccccccc
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-----SSRVVDGN 110 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-----~~R~Ig~v 110 (621)
...+++++.++.+.+|+++||++++|+ +++|+||||||||||+++|+|++ |+.|.|.+||... .+|.++|+
T Consensus 15 L~l~~l~~~~~~~~~l~~vsl~i~~Ge---~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 91 (375)
T PRK09452 15 VELRGISKSFDGKEVISNLDLTINNGE---FLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTV 91 (375)
T ss_pred EEEEEEEEEECCeEEEeeeEEEEeCCC---EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 356789999988899999999999999 99999999999999999999999 8999999999732 34679999
Q ss_pred CCCCcccccchHHHHHHHHhcCC----------------CccC-ccccccccCccCCceeecCCccEEEEecceeccccc
Q 038045 111 FDDPRLTDYDTLLENVRDLREGK----------------PVQV-PIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKL 173 (621)
Q Consensus 111 fQdp~l~d~~tV~enL~~L~~gk----------------~V~~-p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp 173 (621)
||++.+|+++++.+|+.+..... .+.+ ...+..+.++|+|++|+++.+|+++.+|.++|+|||
T Consensus 92 fQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP 171 (375)
T PRK09452 92 FQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDES 171 (375)
T ss_pred ecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 99999999999999998743210 0111 123455678999999999999999999999999999
Q ss_pred cCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEEecCCCCCc
Q 038045 174 RPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIYLLPPGEDP 253 (621)
Q Consensus 174 ~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIYi~P~~~~~ 253 (621)
++.||... ...+...+.+..++.|.|+++|+|++.++. .++|++++|.+|.+.+.+++.++|-.|.+.+.
T Consensus 172 ~s~LD~~~------r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~----~laDri~vl~~G~i~~~g~~~~i~~~p~~~~~ 241 (375)
T PRK09452 172 LSALDYKL------RKQMQNELKALQRKLGITFVFVTHDQEEAL----TMSDRIVVMRDGRIEQDGTPREIYEEPKNLFV 241 (375)
T ss_pred CCcCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHH----HhCCEEEEEECCEEEEEcCHHHHHhCcccHHH
Confidence 99999742 223444454445556999999999999988 88999999999999999999999988877654
Q ss_pred c
Q 038045 254 E 254 (621)
Q Consensus 254 e 254 (621)
.
T Consensus 242 a 242 (375)
T PRK09452 242 A 242 (375)
T ss_pred H
Confidence 3
No 15
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.6e-27 Score=236.17 Aligned_cols=202 Identities=16% Similarity=0.150 Sum_probs=165.6
Q ss_pred eeeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC---C---CeeEEEECCccc-------
Q 038045 36 VPIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM---P---SIAVISMDNYND------- 102 (621)
Q Consensus 36 ~~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl---P---~sGvI~lDg~~~------- 102 (621)
....++|++.||.+.||++|++.++++. |.+|+||||||||||+|++..+. | -.|.|.++|...
T Consensus 7 ~~~~~~l~~yYg~~~aL~~i~l~i~~~~---VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 7 AIEVRDLNLYYGDKHALKDINLDIPKNK---VTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred eeEecceeEEECchhhhccCceeccCCc---eEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 3456789999999999999999999999 99999999999999999998876 4 359999998731
Q ss_pred --ccccccccCCCCcccccchHHHHHHHHhcCCCcc---------C------------ccccccccCccCCceeecCCcc
Q 038045 103 --SSRVVDGNFDDPRLTDYDTLLENVRDLREGKPVQ---------V------------PIYDFESSSRTGYRTVEVPSSR 159 (621)
Q Consensus 103 --~~R~Ig~vfQdp~l~d~~tV~enL~~L~~gk~V~---------~------------p~yd~~~~~rsggq~qrVa~Ar 159 (621)
.++.+|||||.|.-|| +++++|+++..+-..+. . ...+.....+||||+||+++||
T Consensus 84 ~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIAR 162 (253)
T COG1117 84 VELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIAR 162 (253)
T ss_pred HHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHH
Confidence 2468999999999999 99999999843211110 0 1123345578999999999999
Q ss_pred EEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeecc
Q 038045 160 IVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETME 239 (621)
Q Consensus 160 VLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~ 239 (621)
++.++|.++|+|||+++||+. ....+..+...++ ..+|++.|||.|..+. .++|..+.++.|.+...+
T Consensus 163 alAv~PeVlLmDEPtSALDPI-------sT~kIEeLi~eLk-~~yTIviVTHnmqQAa----RvSD~taFf~~G~LvE~g 230 (253)
T COG1117 163 ALAVKPEVLLMDEPTSALDPI-------STLKIEELITELK-KKYTIVIVTHNMQQAA----RVSDYTAFFYLGELVEFG 230 (253)
T ss_pred HHhcCCcEEEecCcccccCch-------hHHHHHHHHHHHH-hccEEEEEeCCHHHHH----HHhHhhhhhcccEEEEEc
Confidence 999999999999999999984 2234445555554 4789999999999988 899999999999999999
Q ss_pred CceeEEecCCCCCc
Q 038045 240 QTYDIYLLPPGEDP 253 (621)
Q Consensus 240 ~~aDIYi~P~~~~~ 253 (621)
....+|..|.....
T Consensus 231 ~T~~iF~~P~~~~T 244 (253)
T COG1117 231 PTDKIFTNPKHKRT 244 (253)
T ss_pred CHHhhhcCccHHHH
Confidence 99999877776543
No 16
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=2.5e-27 Score=254.62 Aligned_cols=204 Identities=17% Similarity=0.157 Sum_probs=170.6
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-----cccccccc
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-----SSRVVDGN 110 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-----~~R~Ig~v 110 (621)
...+++++.++.+.+++++||++++|+ +++|+||||||||||+++|+|+. |+.|.|.+||... .+|.++|+
T Consensus 20 l~l~~v~~~~~~~~~l~~vsl~i~~Ge---~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v 96 (377)
T PRK11607 20 LEIRNLTKSFDGQHAVDDVSLTIYKGE---IFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMM 96 (377)
T ss_pred EEEEeEEEEECCEEEEeeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 456788888888889999999999999 99999999999999999999999 8999999999742 34679999
Q ss_pred CCCCcccccchHHHHHHHHhcCCC----------------ccC-ccccccccCccCCceeecCCccEEEEecceeccccc
Q 038045 111 FDDPRLTDYDTLLENVRDLREGKP----------------VQV-PIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKL 173 (621)
Q Consensus 111 fQdp~l~d~~tV~enL~~L~~gk~----------------V~~-p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp 173 (621)
||++.+|+++++.+|+.+...... +.+ ...+..+..+|+|++|+++.+|+++.+|.++|+|||
T Consensus 97 fQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP 176 (377)
T PRK11607 97 FQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEP 176 (377)
T ss_pred eCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 999999999999999987432110 111 123455678999999999999999999999999999
Q ss_pred cCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEEecCCCCCc
Q 038045 174 RPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIYLLPPGEDP 253 (621)
Q Consensus 174 ~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIYi~P~~~~~ 253 (621)
++.||... ...+...+.+..++.|.|+++++|+.+++. .++|++++|++|.+.+.+++.++|-.|.+.+.
T Consensus 177 ~s~LD~~~------r~~l~~~l~~l~~~~g~tii~vTHd~~ea~----~laDri~vl~~G~i~~~g~~~~~~~~p~~~~~ 246 (377)
T PRK11607 177 MGALDKKL------RDRMQLEVVDILERVGVTCVMVTHDQEEAM----TMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYS 246 (377)
T ss_pred cccCCHHH------HHHHHHHHHHHHHhcCCEEEEEcCCHHHHH----HhCCEEEEEeCCEEEEEcCHHHHHhCCccHHH
Confidence 99999742 223344455555667999999999999988 88999999999999999999999877776543
No 17
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.94 E-value=3.8e-27 Score=252.03 Aligned_cols=202 Identities=16% Similarity=0.150 Sum_probs=167.2
Q ss_pred eecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCe--eEEEECCccc-----ccccccc
Q 038045 38 IQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSI--AVISMDNYND-----SSRVVDG 109 (621)
Q Consensus 38 v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~s--GvI~lDg~~~-----~~R~Ig~ 109 (621)
..+++++.++...+|+++||++.+|+ +++|+||||||||||+++|+|++ |+. |.|.++|... .++.++|
T Consensus 7 ~~~~l~~~~~~~~~l~~vsl~i~~Ge---~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~ 83 (362)
T TIGR03258 7 RIDHLRVAYGANTVLDDLSLEIEAGE---LLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLAL 83 (362)
T ss_pred EEEEEEEEECCeEEEeeeEEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEE
Confidence 45678888888889999999999999 99999999999999999999999 899 9999998642 2467999
Q ss_pred cCCCCcccccchHHHHHHHHhcCC----------------CccC-ccccccccCccCCceeecCCccEEEEecceecccc
Q 038045 110 NFDDPRLTDYDTLLENVRDLREGK----------------PVQV-PIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEK 172 (621)
Q Consensus 110 vfQdp~l~d~~tV~enL~~L~~gk----------------~V~~-p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDE 172 (621)
+||++.+|+++|+.+|+.+..... .+.+ ...+..++++|+|++|+++.+|+++.+|.++|+||
T Consensus 84 vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDE 163 (362)
T TIGR03258 84 LFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDE 163 (362)
T ss_pred EECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 999999999999999998743211 0111 12445678899999999999999999999999999
Q ss_pred ccCCCCeeEEecCCchHHHHHHHHHHHHHc-CCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEEecCCCC
Q 038045 173 LRPLLDLRVSVTGGVHFDLVKRVLRDIQRV-GQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIYLLPPGE 251 (621)
Q Consensus 173 p~s~LDlkV~Vd~~~d~~LirRI~Rdl~er-G~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIYi~P~~~ 251 (621)
|++.||... ...+...+.+..++. |.|+++++|+++++. .++|++++|.+|.+.+.+++.++|-.|.+.
T Consensus 164 P~s~LD~~~------r~~l~~~l~~l~~~~~g~til~vTHd~~ea~----~l~dri~vl~~G~i~~~g~~~~~~~~p~~~ 233 (362)
T TIGR03258 164 PLSALDANI------RANMREEIAALHEELPELTILCVTHDQDDAL----TLADKAGIMKDGRLAAHGEPQALYDAPADG 233 (362)
T ss_pred ccccCCHHH------HHHHHHHHHHHHHhCCCCEEEEEeCCHHHHH----HhCCEEEEEECCEEEEEcCHHHHHhCcCcH
Confidence 999999742 223333343333343 899999999999998 889999999999999999999998777655
Q ss_pred C
Q 038045 252 D 252 (621)
Q Consensus 252 ~ 252 (621)
+
T Consensus 234 ~ 234 (362)
T TIGR03258 234 F 234 (362)
T ss_pred H
Confidence 4
No 18
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=99.93 E-value=4e-26 Score=227.77 Aligned_cols=181 Identities=35% Similarity=0.646 Sum_probs=163.2
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhhCC--CeeEEEECCcccccc------cccccCCCCcccccchHHHHHHHHhcCCC
Q 038045 63 DGIILIGLAGPSGAGKTIFTEKILNFMP--SIAVISMDNYNDSSR------VVDGNFDDPRLTDYDTLLENVRDLREGKP 134 (621)
Q Consensus 63 e~~iIVGI~GpSGSGKSTLlr~LagLlP--~sGvI~lDg~~~~~R------~Ig~vfQdp~l~d~~tV~enL~~L~~gk~ 134 (621)
+++++|||+|+|||||||+++.|...++ ....|+.|+|+.... ...++|++|.+||+..+.++|..++.++.
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g~~ 85 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQGKP 85 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcCCc
Confidence 5668999999999999999999999994 568999999975432 45689999999999999999999999999
Q ss_pred ccCccccccccCccCCceeecCCccEEEEecceeccc-cccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHH
Q 038045 135 VQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSE-KLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQI 213 (621)
Q Consensus 135 V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlD-Ep~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~ 213 (621)
+..|.|++..+.+.. +...+.+.+++|+||.++|.| ++++.+|+++||+++.+.+++||+.|++.++|.+++.+..+|
T Consensus 86 v~~P~yd~~~~~r~~-~~i~~~p~~VVIvEGi~~l~d~~lr~~~d~kIfvdtd~D~RliRri~RD~~~rg~~~e~vi~qy 164 (218)
T COG0572 86 VDLPVYDYKTHTREP-ETIKVEPNDVVIVEGILLLYDERLRDLMDLKIFVDTDADVRLIRRIKRDVQERGRDLESVIEQY 164 (218)
T ss_pred ccccccchhcccccC-CccccCCCcEEEEecccccccHHHHhhcCEEEEEeCCccHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999999988876 677888999999999999998 799999999999999999999999999999999999999999
Q ss_pred HHHhccccccchhhhcCCCCceeeccCceeEEecCCCCCccc
Q 038045 214 SETSAKNLSVDQIKAVYPEGHTETMEQTYDIYLLPPGEDPES 255 (621)
Q Consensus 214 eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIYi~P~~~~~e~ 255 (621)
.... . ++++.+|+|++.+||+ ++|.+.....
T Consensus 165 ~~~v----k------p~~~~fIeptk~~ADi-iip~~~~n~v 195 (218)
T COG0572 165 VKTV----R------PMYEQFIEPTKKYADI-IIPSGGKNEV 195 (218)
T ss_pred HHhh----C------hhhhhccCcccccceE-EeecCCccee
Confidence 8654 4 5999999999999999 7898875543
No 19
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.93 E-value=3e-27 Score=251.18 Aligned_cols=249 Identities=18% Similarity=0.204 Sum_probs=185.9
Q ss_pred ecceeeeeC----cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc----------c
Q 038045 39 QDPLSFEKG----FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND----------S 103 (621)
Q Consensus 39 ~~~lsf~~G----~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~----------~ 103 (621)
.+++++.|+ ...+|+++||++++|+ ++||+||||||||||+++|+|++ |+.|.|.+||... .
T Consensus 4 ~~~lsk~y~~~~~~~~~L~~vsl~i~~Ge---i~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 4 LSNITKVFHQGTKTIQALNNVSLHVPAGQ---IYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred EEEEEEEECCCCcceEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 456776663 3579999999999999 99999999999999999999999 8999999998732 1
Q ss_pred cccccccCCCCcccccchHHHHHHHHhc--CC--------------CccCc-cccccccCccCCceeecCCccEEEEecc
Q 038045 104 SRVVDGNFDDPRLTDYDTLLENVRDLRE--GK--------------PVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGI 166 (621)
Q Consensus 104 ~R~Ig~vfQdp~l~d~~tV~enL~~L~~--gk--------------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~ 166 (621)
++.++|+||++.+++..|+.+|+.+... +. .+.+. ..+..+.++|+|++|+++++|+++.+|.
T Consensus 81 r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~ 160 (343)
T TIGR02314 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPK 160 (343)
T ss_pred hcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCC
Confidence 3479999999999999999999987432 10 11111 2345567899999999999999999999
Q ss_pred eeccccccCCCCeeEEecCCchHHHHHHHHHHH-HHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEE
Q 038045 167 YALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDI-QRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIY 245 (621)
Q Consensus 167 lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl-~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIY 245 (621)
++++|||++.||+. ..+.+..+.+.+ ++.|.|++.++|+++.+. .+||++++|++|.+...+++.+++
T Consensus 161 iLLlDEPts~LD~~-------t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~----~~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 161 VLLCDEATSALDPA-------TTQSILELLKEINRRLGLTILLITHEMDVVK----RICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred EEEEeCCcccCCHH-------HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH----HhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999973 233444444444 445999999999999987 789999999999998888888876
Q ss_pred ecCCCCCcccc----------ccee-EEee--c---CCeeEEEeeeeecCCCeEeccceeeEEEeeeeccee
Q 038045 246 LLPPGEDPESC----------QSYL-RMRN--K---DGKYSLMFEEWVTDIPFVISPRITFEVSVRLLGGLM 301 (621)
Q Consensus 246 i~P~~~~~e~~----------~d~I-rvr~--~---~g~~~L~f~e~i~d~~fIi~P~~~FeV~~~~LgGll 301 (621)
..|........ .++. .++. . .....+.|.+.....|++......|.+.+++|.|-+
T Consensus 230 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~il~~~~ 301 (343)
T TIGR02314 230 SHPKTPLAQKFIRSTLHLSIPEDYQERLQATPFADSVPMVRLEFTGQTVDAPLLSQTARRFNVDNSILSSQM 301 (343)
T ss_pred cCCCcHHHHHHHhhcccccCChhHHhhcccccCCCcceEEEEEEcCCCCCchHHHHHHHHhCCcEEEEEeee
Confidence 55543211100 0000 0111 0 013456665555667777776667888888887743
No 20
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.93 E-value=9.1e-27 Score=238.12 Aligned_cols=195 Identities=14% Similarity=0.139 Sum_probs=163.1
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-------cccccc
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-------SSRVVD 108 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-------~~R~Ig 108 (621)
...++++|.|+.+.+++++||++++|+ +++|+||||||||||+|+|+|++ |..|.|.+||... ..+.++
T Consensus 3 L~~~~ls~~y~~~~il~~ls~~i~~G~---i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia 79 (258)
T COG1120 3 LEVENLSFGYGGKPILDDLSFSIPKGE---ITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLA 79 (258)
T ss_pred eEEEEEEEEECCeeEEecceEEecCCc---EEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEE
Confidence 457889999999999999999999999 99999999999999999999999 8999999999732 236799
Q ss_pred ccCCCCcccccchHHHHHHHHhcCC--C------------------ccCcc-ccccccCccCCceeecCCccEEEEecce
Q 038045 109 GNFDDPRLTDYDTLLENVRDLREGK--P------------------VQVPI-YDFESSSRTGYRTVEVPSSRIVIIEGIY 167 (621)
Q Consensus 109 ~vfQdp~l~d~~tV~enL~~L~~gk--~------------------V~~p~-yd~~~~~rsggq~qrVa~ArVLIvEG~l 167 (621)
|++|.+......+|.+.+...+... . +.... .++...++||||+|++-+|++++-++.+
T Consensus 80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~i 159 (258)
T COG1120 80 YVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPI 159 (258)
T ss_pred EeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCE
Confidence 9999988877888888887644221 0 00111 2233578899999999999999999999
Q ss_pred eccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 168 ALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 168 LLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
+|+|||++.||+.- ..+.+.-+++..+++|.|++.++||+..++ ..||++..|.+|.+...+.+.++
T Consensus 160 LLLDEPTs~LDi~~------Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~----ryad~~i~lk~G~i~a~G~p~ev 226 (258)
T COG1120 160 LLLDEPTSHLDIAH------QIEVLELLRDLNREKGLTVVMVLHDLNLAA----RYADHLILLKDGKIVAQGTPEEV 226 (258)
T ss_pred EEeCCCccccCHHH------HHHHHHHHHHHHHhcCCEEEEEecCHHHHH----HhCCEEEEEECCeEEeecCcchh
Confidence 99999999999853 335555566666688999999999999998 88999999999999998888777
No 21
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.93 E-value=5.8e-27 Score=242.69 Aligned_cols=197 Identities=18% Similarity=0.197 Sum_probs=170.4
Q ss_pred eCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-----------ccccccccCCC
Q 038045 46 KGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-----------SSRVVDGNFDD 113 (621)
Q Consensus 46 ~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-----------~~R~Ig~vfQd 113 (621)
.|...-++++||+++.|| |+.|.|-||||||||+|+|.++. |+.|.|.+||... .++.++||||+
T Consensus 38 tg~vvGv~~~sl~v~~Ge---IfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~ 114 (386)
T COG4175 38 TGLVVGVNDASLDVEEGE---IFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQS 114 (386)
T ss_pred hCcEEeeccceeeecCCe---EEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhh
Confidence 466677999999999999 99999999999999999999999 9999999999731 23579999999
Q ss_pred CcccccchHHHHHHHHhcCC----------------CccCcccc-ccccCccCCceeecCCccEEEEecceeccccccCC
Q 038045 114 PRLTDYDTLLENVRDLREGK----------------PVQVPIYD-FESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPL 176 (621)
Q Consensus 114 p~l~d~~tV~enL~~L~~gk----------------~V~~p~yd-~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~ 176 (621)
+.++||.||.+|+.+.++-. .+.+..|. +.++++|||.+|||..||++..+|.++|+||+++.
T Consensus 115 FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSA 194 (386)
T COG4175 115 FALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSA 194 (386)
T ss_pred hccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhh
Confidence 99999999999999865322 23333344 45789999999999999999999999999999999
Q ss_pred CCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEEecCCCCCccc
Q 038045 177 LDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIYLLPPGEDPES 255 (621)
Q Consensus 177 LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIYi~P~~~~~e~ 255 (621)
|||.++. ++...+.+...+.++|+++|+||++|+. ++.+++++|.+|.+.|.+++.+|...|.+.+...
T Consensus 195 LDPLIR~------~mQdeLl~Lq~~l~KTIvFitHDLdEAl----riG~rIaimkdG~ivQ~Gtp~eIl~~PAndYV~~ 263 (386)
T COG4175 195 LDPLIRT------EMQDELLELQAKLKKTIVFITHDLDEAL----RIGDRIAIMKDGEIVQVGTPEEILLNPANDYVRD 263 (386)
T ss_pred cChHHHH------HHHHHHHHHHHHhCCeEEEEecCHHHHH----hccceEEEecCCeEEEeCCHHHHHcCccHHHHHH
Confidence 9998755 4455666777778999999999999999 9999999999999999999999988888877643
No 22
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.93 E-value=1.7e-26 Score=246.18 Aligned_cols=204 Identities=18% Similarity=0.147 Sum_probs=167.6
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-----cccccccc
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-----SSRVVDGN 110 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-----~~R~Ig~v 110 (621)
...+++++.++...+++++||++++|+ +++|+||||||||||+++|+|++ |+.|.|.+||... .++.++|+
T Consensus 3 L~i~~l~~~~~~~~~l~~isl~i~~Ge---~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v 79 (353)
T PRK10851 3 IEIANIKKSFGRTQVLNDISLDIPSGQ---MVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFV 79 (353)
T ss_pred EEEEEEEEEeCCeEEEEEeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEE
Confidence 346778888888889999999999999 99999999999999999999999 8999999999732 23679999
Q ss_pred CCCCcccccchHHHHHHHHhcC-----C---------------CccCc-cccccccCccCCceeecCCccEEEEecceec
Q 038045 111 FDDPRLTDYDTLLENVRDLREG-----K---------------PVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYAL 169 (621)
Q Consensus 111 fQdp~l~d~~tV~enL~~L~~g-----k---------------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLL 169 (621)
||++.+|+++++.+|+.+.... . .+.++ ..+..+.++|+|++|+++.+|+++.+|.+++
T Consensus 80 ~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llL 159 (353)
T PRK10851 80 FQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILL 159 (353)
T ss_pred ecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999999874321 0 01121 2344567899999999999999999999999
Q ss_pred cccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEEecCC
Q 038045 170 SEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIYLLPP 249 (621)
Q Consensus 170 lDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIYi~P~ 249 (621)
+|||++.||... ...+...+.+..++.|.|++.++|++.++. .++|++.+|.+|.+.+.+++.++|-.|.
T Consensus 160 LDEP~s~LD~~~------r~~l~~~L~~l~~~~g~tii~vTHd~~ea~----~~~Dri~vl~~G~i~~~g~~~~i~~~p~ 229 (353)
T PRK10851 160 LDEPFGALDAQV------RKELRRWLRQLHEELKFTSVFVTHDQEEAM----EVADRVVVMSQGNIEQAGTPDQVWREPA 229 (353)
T ss_pred EeCCCccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHH----HhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 999999999742 223334444444445999999999999998 8899999999999999999999987776
Q ss_pred CCCc
Q 038045 250 GEDP 253 (621)
Q Consensus 250 ~~~~ 253 (621)
+.+.
T Consensus 230 ~~~~ 233 (353)
T PRK10851 230 TRFV 233 (353)
T ss_pred chHH
Confidence 6543
No 23
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.93 E-value=3.7e-26 Score=229.62 Aligned_cols=172 Identities=16% Similarity=0.176 Sum_probs=136.2
Q ss_pred EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-----------ccccccccCCCCcc
Q 038045 49 FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-----------SSRVVDGNFDDPRL 116 (621)
Q Consensus 49 ~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-----------~~R~Ig~vfQdp~l 116 (621)
..+|+++||++++|| +|+|+||||||||||+++|.++. |+.|.|.++|... .++.+||+||++.+
T Consensus 18 ~~~L~~v~l~i~~Ge---~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nL 94 (226)
T COG1136 18 VEALKDVNLEIEAGE---FVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNL 94 (226)
T ss_pred eEecccceEEEcCCC---EEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCC
Confidence 589999999999999 99999999999999999999999 9999999998521 23469999999999
Q ss_pred cccchHHHHHHHHh--cCCC--------------ccCc-ccc-ccccCccCCceeecCCccEEEEecceeccccccCCCC
Q 038045 117 TDYDTLLENVRDLR--EGKP--------------VQVP-IYD-FESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLD 178 (621)
Q Consensus 117 ~d~~tV~enL~~L~--~gk~--------------V~~p-~yd-~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LD 178 (621)
++.+|+.|||.... .+.. +.+. ... +.+.++||||+|||++||+++.+|.++|.|||+.+||
T Consensus 95 l~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD 174 (226)
T COG1136 95 LPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLD 174 (226)
T ss_pred CCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCC
Confidence 99999999998532 1111 1121 222 5578999999999999999999999999999999999
Q ss_pred eeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCc
Q 038045 179 LRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGH 234 (621)
Q Consensus 179 lkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~ 234 (621)
.+ .....+..+....++.|.|++.|||+..-+. .+|++..+.+|.
T Consensus 175 ~~------t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~-----~~dr~i~l~dG~ 219 (226)
T COG1136 175 SK------TAKEVLELLRELNKERGKTIIMVTHDPELAK-----YADRVIELKDGK 219 (226)
T ss_pred hH------HHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-----hCCEEEEEeCCe
Confidence 73 2223444444444567999999999987663 445554555554
No 24
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.92 E-value=3.9e-26 Score=244.67 Aligned_cols=203 Identities=16% Similarity=0.177 Sum_probs=165.9
Q ss_pred eecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-----ccccccccC
Q 038045 38 IQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-----SSRVVDGNF 111 (621)
Q Consensus 38 v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-----~~R~Ig~vf 111 (621)
..+++++.++.+.+|+++||++++|+ +++|+||||||||||+++|+|++ |+.|.|.++|... ..+.++|+|
T Consensus 5 ~i~~l~~~~~~~~vl~~vsl~i~~Ge---~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~ 81 (369)
T PRK11000 5 TLRNVTKAYGDVVISKDINLDIHEGE---FVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVF 81 (369)
T ss_pred EEEEEEEEeCCeEEEeeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEe
Confidence 46788888888889999999999999 99999999999999999999999 8999999998632 235799999
Q ss_pred CCCcccccchHHHHHHHHhcCC----------------CccCc-cccccccCccCCceeecCCccEEEEecceecccccc
Q 038045 112 DDPRLTDYDTLLENVRDLREGK----------------PVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLR 174 (621)
Q Consensus 112 Qdp~l~d~~tV~enL~~L~~gk----------------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~ 174 (621)
|++.+|+++|+.+|+.+..... .+.+. ..+.....+|+|++|+++.+++++.+|.++|+|||+
T Consensus 82 Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPt 161 (369)
T PRK11000 82 QSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL 161 (369)
T ss_pred CCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 9999999999999998743210 11111 134456789999999999999999999999999999
Q ss_pred CCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEEecCCCCCc
Q 038045 175 PLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIYLLPPGEDP 253 (621)
Q Consensus 175 s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIYi~P~~~~~ 253 (621)
+.||... ...+...+.+...+.|.|++.++|+++++. .++|++.+|.+|.+.+.+++.++|..|.+.+.
T Consensus 162 s~LD~~~------~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~----~~~d~i~vl~~G~i~~~g~~~~i~~~p~~~~~ 230 (369)
T PRK11000 162 SNLDAAL------RVQMRIEISRLHKRLGRTMIYVTHDQVEAM----TLADKIVVLDAGRVAQVGKPLELYHYPANRFV 230 (369)
T ss_pred ccCCHHH------HHHHHHHHHHHHHHhCCEEEEEeCCHHHHH----HhCCEEEEEECCEEEEEcCHHHHHhCcccHHH
Confidence 9999732 122333333333445999999999999887 78899999999999999999998877776543
No 25
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.6e-25 Score=226.86 Aligned_cols=195 Identities=15% Similarity=0.163 Sum_probs=159.3
Q ss_pred eeecceeeeeCcE-EEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc--------cccc
Q 038045 37 PIQDPLSFEKGFF-VVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND--------SSRV 106 (621)
Q Consensus 37 ~v~~~lsf~~G~~-~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~--------~~R~ 106 (621)
...++++|.|+.. .+++++|+.+++|+ .++|+|+||||||||++.|+|++ |..|.|.+||... .++.
T Consensus 4 i~~~~l~~~y~~~~~~l~~v~~~i~~Ge---~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 4 IEAENLSFRYPGRKAALKDVSLEIEKGE---RVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred EEEEEEEEEcCCCceeeeeeEEEECCCC---EEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 4567888888665 99999999999999 99999999999999999999999 9999999999742 2467
Q ss_pred ccccCCCCc-ccccchHHHHHHHHhcCCCccC-----------------ccccccccCccCCceeecCCccEEEEeccee
Q 038045 107 VDGNFDDPR-LTDYDTLLENVRDLREGKPVQV-----------------PIYDFESSSRTGYRTVEVPSSRIVIIEGIYA 168 (621)
Q Consensus 107 Ig~vfQdp~-l~d~~tV~enL~~L~~gk~V~~-----------------p~yd~~~~~rsggq~qrVa~ArVLIvEG~lL 168 (621)
+|++||+|+ -+-..||.+.+++...+..+.. ...++.+..+||||+|++++|.+++++|.++
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~il 160 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEIL 160 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEE
Confidence 999999997 3667899999998654422211 1135667899999999999999999999999
Q ss_pred ccccccCCCCeeEEecCCchHHHHHHHHHHH-HHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEE
Q 038045 169 LSEKLRPLLDLRVSVTGGVHFDLVKRVLRDI-QRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIY 245 (621)
Q Consensus 169 LlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl-~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIY 245 (621)
++|||+++||++ ..+.+.++.+.+ .+.|.|++.++|+++.+. .++|++.+|.+|.+...+.+.+++
T Consensus 161 iLDEPta~LD~~-------~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~----~~ad~v~vl~~G~i~~~g~p~~i~ 227 (235)
T COG1122 161 LLDEPTAGLDPK-------GRRELLELLKKLKEEGGKTIIIVTHDLELVL----EYADRVVVLDDGKILADGDPAEIF 227 (235)
T ss_pred EEcCCCCCCCHH-------HHHHHHHHHHHHHhcCCCeEEEEeCcHHHHH----hhCCEEEEEECCEEeecCCHHHHh
Confidence 999999999974 233444444444 444899999999999998 788899999999987777766653
No 26
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.92 E-value=2.1e-25 Score=233.13 Aligned_cols=194 Identities=18% Similarity=0.123 Sum_probs=162.1
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc------cccccc
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS------SRVVDG 109 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~------~R~Ig~ 109 (621)
...+++++.+|.+.+|++|||++++|+ ++||+||||||||||+++|+|++ |+.|.|.++|+... ++.+||
T Consensus 8 i~i~~l~k~~~~~~~l~~vsl~i~~Ge---i~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~ 84 (306)
T PRK13537 8 IDFRNVEKRYGDKLVVDGLSFHVQRGE---CFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGV 84 (306)
T ss_pred EEEEeEEEEECCeEEEecceEEEeCCc---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEE
Confidence 457789999998899999999999999 99999999999999999999999 99999999997422 356999
Q ss_pred cCCCCcccccchHHHHHHHHhc--CC--------------CccC-ccccccccCccCCceeecCCccEEEEecceecccc
Q 038045 110 NFDDPRLTDYDTLLENVRDLRE--GK--------------PVQV-PIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEK 172 (621)
Q Consensus 110 vfQdp~l~d~~tV~enL~~L~~--gk--------------~V~~-p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDE 172 (621)
+||++.+++.+|+.+|+.+... +. .+.+ ...+.....+|+|+++++..+++++.+|.++++||
T Consensus 85 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDE 164 (306)
T PRK13537 85 VPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDE 164 (306)
T ss_pred EeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 9999999999999999986432 10 0111 12344467889999999999999999999999999
Q ss_pred ccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 173 LRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 173 p~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
|++.||+. ..+.++.+.+.+.+.|.|++.++|+++++. .+||+++++++|.+...++..++
T Consensus 165 Pt~gLD~~-------~~~~l~~~l~~l~~~g~till~sH~l~e~~----~~~d~i~il~~G~i~~~g~~~~l 225 (306)
T PRK13537 165 PTTGLDPQ-------ARHLMWERLRSLLARGKTILLTTHFMEEAE----RLCDRLCVIEEGRKIAEGAPHAL 225 (306)
T ss_pred CCcCCCHH-------HHHHHHHHHHHHHhCCCEEEEECCCHHHHH----HhCCEEEEEECCEEEEECCHHHH
Confidence 99999973 345666666666667999999999999987 78899999999988777666555
No 27
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=3.5e-25 Score=222.24 Aligned_cols=192 Identities=18% Similarity=0.138 Sum_probs=156.4
Q ss_pred eeecceeeee-CcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcc----------ccc
Q 038045 37 PIQDPLSFEK-GFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYN----------DSS 104 (621)
Q Consensus 37 ~v~~~lsf~~-G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~----------~~~ 104 (621)
.-+++++..| +.+.+|++|||.|++|| +|+|+|+||||||||+|+|+|+. |+.|.|.++|.. ..+
T Consensus 4 i~~~nl~k~yp~~~~aL~~Vnl~I~~GE---~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 4 IEVKNLSKTYPGGHQALKDVNLEINQGE---MVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred EEEeeeeeecCCCceeeeeEeEEeCCCc---EEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 4566777777 99999999999999999 99999999999999999999988 899999999962 234
Q ss_pred ccccccCCCCcccccchHHHHHHHHhcCCC------------------------ccCcc-ccccccCccCCceeecCCcc
Q 038045 105 RVVDGNFDDPRLTDYDTLLENVRDLREGKP------------------------VQVPI-YDFESSSRTGYRTVEVPSSR 159 (621)
Q Consensus 105 R~Ig~vfQdp~l~d~~tV~enL~~L~~gk~------------------------V~~p~-yd~~~~~rsggq~qrVa~Ar 159 (621)
+.+||+||+|++.+.++|.+|+...+.+.. +.+-. .-.+.+.+||||+|||++||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIAR 160 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIAR 160 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHH
Confidence 679999999999999999999976443310 11111 11235789999999999999
Q ss_pred EEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeecc
Q 038045 160 IVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETME 239 (621)
Q Consensus 160 VLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~ 239 (621)
+|+-+|.++|.|||.+.||+. .....+.-+++..++.|.|++...|+++-+. ..++++.-+..|.+..-+
T Consensus 161 aL~Q~pkiILADEPvasLDp~------~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~----~Y~~Riigl~~G~ivfDg 230 (258)
T COG3638 161 ALVQQPKIILADEPVASLDPE------SAKKVMDILKDINQEDGITVIVNLHQVDLAK----KYADRIIGLKAGRIVFDG 230 (258)
T ss_pred HHhcCCCEEecCCcccccChh------hHHHHHHHHHHHHHHcCCEEEEEechHHHHH----HHHhhheEecCCcEEEeC
Confidence 999999999999999999984 2234555555666788999999999999887 778888888888776544
Q ss_pred Cc
Q 038045 240 QT 241 (621)
Q Consensus 240 ~~ 241 (621)
..
T Consensus 231 ~~ 232 (258)
T COG3638 231 PA 232 (258)
T ss_pred Ch
Confidence 43
No 28
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.91 E-value=2e-25 Score=238.93 Aligned_cols=194 Identities=17% Similarity=0.123 Sum_probs=158.3
Q ss_pred eCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc-----------cccccccCCC
Q 038045 46 KGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS-----------SRVVDGNFDD 113 (621)
Q Consensus 46 ~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~-----------~R~Ig~vfQd 113 (621)
+|.+.+++++||++++|+ +++|+||||||||||+++|+|+. |..|.|.++|.... ++.++|+||+
T Consensus 3 ~~~~~~l~~vs~~i~~Ge---i~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~ 79 (363)
T TIGR01186 3 TGGKKGVNDADLAIAKGE---IFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQ 79 (363)
T ss_pred cCCceeEEeeEEEEcCCC---EEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECC
Confidence 466779999999999999 99999999999999999999999 89999999996321 4579999999
Q ss_pred CcccccchHHHHHHHHhcC----------------CCccCc-cccccccCccCCceeecCCccEEEEecceeccccccCC
Q 038045 114 PRLTDYDTLLENVRDLREG----------------KPVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPL 176 (621)
Q Consensus 114 p~l~d~~tV~enL~~L~~g----------------k~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~ 176 (621)
+.+|+++|+.+|+.+.... +.+.+. ..+..+.++|||++|+++.+|+++.+|.++|+|||++.
T Consensus 80 ~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~sa 159 (363)
T TIGR01186 80 FALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSA 159 (363)
T ss_pred CcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 9999999999999874321 011222 23455778999999999999999999999999999999
Q ss_pred CCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEEecCCCCC
Q 038045 177 LDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIYLLPPGED 252 (621)
Q Consensus 177 LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIYi~P~~~~ 252 (621)
||+.. ...+...+.+..++.|.|++.++|++.++. .++|++++|.+|.+.+.+++.+++-.|.+.+
T Consensus 160 LD~~~------r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~----~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~ 225 (363)
T TIGR01186 160 LDPLI------RDSMQDELKKLQATLQKTIVFITHDLDEAI----RIGDRIVIMKAGEIVQVGTPDEILRNPANEY 225 (363)
T ss_pred CCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHH----HhCCEEEEEeCCEEEeeCCHHHHHhCcccHH
Confidence 99742 223333344444456999999999999987 8889999999999999988888865555543
No 29
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.91 E-value=2.9e-25 Score=216.81 Aligned_cols=182 Identities=20% Similarity=0.179 Sum_probs=139.5
Q ss_pred cceeeeeC-cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc----------ccccc
Q 038045 40 DPLSFEKG-FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND----------SSRVV 107 (621)
Q Consensus 40 ~~lsf~~G-~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~----------~~R~I 107 (621)
++++..|+ .+.+|++|||.+++|| ++-|+||||||||||+|+|.+.. |+.|.|.++|+.. .+|++
T Consensus 5 ~~V~k~Y~~g~~aL~~vs~~i~~Ge---f~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~I 81 (223)
T COG2884 5 ENVSKAYPGGREALRDVSFHIPKGE---FVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQI 81 (223)
T ss_pred hhhhhhcCCCchhhhCceEeecCce---EEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhee
Confidence 44444443 3669999999999999 99999999999999999999999 9999999999832 25789
Q ss_pred cccCCCCcccccchHHHHHHHHhcCCC----------------ccCc-cccccccCccCCceeecCCccEEEEecceecc
Q 038045 108 DGNFDDPRLTDYDTLLENVRDLREGKP----------------VQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYALS 170 (621)
Q Consensus 108 g~vfQdp~l~d~~tV~enL~~L~~gk~----------------V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLl 170 (621)
|+||||+.+++..|+++|+++...-.. +.+. .....+.++|||++|++++||+++-.|.+++.
T Consensus 82 GvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlA 161 (223)
T COG2884 82 GVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLA 161 (223)
T ss_pred eeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEee
Confidence 999999999999999999998653211 1111 12234678999999999999999999999999
Q ss_pred ccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCce
Q 038045 171 EKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHT 235 (621)
Q Consensus 171 DEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~I 235 (621)
|||+.+||+.. . .-+-++...+.+.|.|+...||+..-+. ....++..+..|++
T Consensus 162 DEPTGNLDp~~------s-~~im~lfeeinr~GtTVl~ATHd~~lv~----~~~~rvl~l~~Grl 215 (223)
T COG2884 162 DEPTGNLDPDL------S-WEIMRLFEEINRLGTTVLMATHDLELVN----RMRHRVLALEDGRL 215 (223)
T ss_pred cCCCCCCChHH------H-HHHHHHHHHHhhcCcEEEEEeccHHHHH----hccCcEEEEeCCEE
Confidence 99999999721 1 1222333445677999999999987665 33333334445544
No 30
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.91 E-value=1.1e-24 Score=226.88 Aligned_cols=193 Identities=15% Similarity=0.147 Sum_probs=163.2
Q ss_pred eecceeeeeC-cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc------cccccc
Q 038045 38 IQDPLSFEKG-FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS------SRVVDG 109 (621)
Q Consensus 38 v~~~lsf~~G-~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~------~R~Ig~ 109 (621)
..++++..+| ...+|++|||++++|+ ++||+||||||||||+++|+|+. |+.|.|.++|.... ++.+||
T Consensus 6 ~~~~l~k~~~~~~~~l~~vs~~i~~Ge---i~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy 82 (293)
T COG1131 6 EVRNLTKKYGGDKTALDGVSFEVEPGE---IFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGY 82 (293)
T ss_pred eecceEEEeCCCCEEEeceeEEEcCCe---EEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEE
Confidence 4578888899 6999999999999999 99999999999999999999999 99999999997432 357999
Q ss_pred cCCCCcccccchHHHHHHHHhcCCC----------------ccCccc-cccccCccCCceeecCCccEEEEecceecccc
Q 038045 110 NFDDPRLTDYDTLLENVRDLREGKP----------------VQVPIY-DFESSSRTGYRTVEVPSSRIVIIEGIYALSEK 172 (621)
Q Consensus 110 vfQdp~l~d~~tV~enL~~L~~gk~----------------V~~p~y-d~~~~~rsggq~qrVa~ArVLIvEG~lLLlDE 172 (621)
++|+|.+++.+|++|++.+...-.. +.++.+ +......|+|+++++..+.+++.+|.++++||
T Consensus 83 ~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDE 162 (293)
T COG1131 83 VPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDE 162 (293)
T ss_pred EccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 9999999999999999998542211 112221 23357789999999999999999999999999
Q ss_pred ccCCCCeeEEecCCchHHHHHHHHHHHHHcC-CCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 173 LRPLLDLRVSVTGGVHFDLVKRVLRDIQRVG-QEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 173 p~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG-~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
|++.||+. ....++++.+.+.+.| .|+..++|.++++. ..||++.++++|.+...+...++
T Consensus 163 Pt~GLDp~-------~~~~~~~~l~~l~~~g~~tvlissH~l~e~~----~~~d~v~il~~G~~~~~g~~~~l 224 (293)
T COG1131 163 PTSGLDPE-------SRREIWELLRELAKEGGVTILLSTHILEEAE----ELCDRVIILNDGKIIAEGTPEEL 224 (293)
T ss_pred CCcCCCHH-------HHHHHHHHHHHHHhCCCcEEEEeCCcHHHHH----HhCCEEEEEeCCEEEEeCCHHHH
Confidence 99999973 3466777777777777 89999999999998 77899999999988887766654
No 31
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.91 E-value=6.2e-25 Score=242.77 Aligned_cols=194 Identities=19% Similarity=0.237 Sum_probs=163.3
Q ss_pred CcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcc---------cccccccccCCCCc-
Q 038045 47 GFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYN---------DSSRVVDGNFDDPR- 115 (621)
Q Consensus 47 G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~---------~~~R~Ig~vfQdp~- 115 (621)
+...++++|||++.+|| ++||+|+||||||||+|+|+|+. |++|.|.++|.. ..++.+-|+||||.
T Consensus 302 ~~~~Av~~VSf~l~~GE---~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~ 378 (539)
T COG1123 302 GEVKAVDDVSFDLREGE---TLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYS 378 (539)
T ss_pred cceeeeeeeeeEecCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCccc
Confidence 45789999999999999 99999999999999999999999 999999999863 12356889999986
Q ss_pred -ccccchHHHHHHHHhc--C---------------CCccCc--cccccccCccCCceeecCCccEEEEecceeccccccC
Q 038045 116 -LTDYDTLLENVRDLRE--G---------------KPVQVP--IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRP 175 (621)
Q Consensus 116 -l~d~~tV~enL~~L~~--g---------------k~V~~p--~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s 175 (621)
+.|++|+.+.|..... . ..+.++ ..++.+++.||||+||+++||+++.+|.++++|||.+
T Consensus 379 SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~S 458 (539)
T COG1123 379 SLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVS 458 (539)
T ss_pred ccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCcc
Confidence 7899999999987432 1 012222 3667789999999999999999999999999999999
Q ss_pred CCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEEecCCCCCc
Q 038045 176 LLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIYLLPPGEDP 253 (621)
Q Consensus 176 ~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIYi~P~~~~~ 253 (621)
.||+.+. ...+.-+++...+.|.|.++|+||+..+. .+||++++|+.|.+...+...+++-.|...+.
T Consensus 459 aLDvsvq------a~VlnLl~~lq~e~g~t~lfISHDl~vV~----~i~drv~vm~~G~iVE~G~~~~v~~~p~h~Yt 526 (539)
T COG1123 459 ALDVSVQ------AQVLNLLKDLQEELGLTYLFISHDLAVVR----YIADRVAVMYDGRIVEEGPTEKVFENPQHPYT 526 (539)
T ss_pred ccCHHHH------HHHHHHHHHHHHHhCCEEEEEeCCHHHHH----hhCceEEEEECCeEEEeCCHHHHhcCCCChHH
Confidence 9998542 24555566666777999999999999988 89999999999999999988888777766654
No 32
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.91 E-value=2.8e-25 Score=215.48 Aligned_cols=201 Identities=21% Similarity=0.235 Sum_probs=163.6
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcc--------------
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYN-------------- 101 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~-------------- 101 (621)
..++++...||.+.+|++|||...+|+ +|.|+|.||||||||+|||.-+. |+.|.|.++|..
T Consensus 7 l~v~dlHK~~G~~eVLKGvSL~A~~Gd---VisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~a 83 (256)
T COG4598 7 LEVEDLHKRYGEHEVLKGVSLQANAGD---VISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPA 83 (256)
T ss_pred eehhHHHhhcccchhhcceeeecCCCC---EEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeC
Confidence 456677778899999999999999999 99999999999999999999888 999999999861
Q ss_pred cc------cccccccCCCCcccccchHHHHHHHH-h----cCC------------CccC-ccccccccCccCCceeecCC
Q 038045 102 DS------SRVVDGNFDDPRLTDYDTLLENVRDL-R----EGK------------PVQV-PIYDFESSSRTGYRTVEVPS 157 (621)
Q Consensus 102 ~~------~R~Ig~vfQdp~l~d~~tV~enL~~L-~----~gk------------~V~~-p~yd~~~~~rsggq~qrVa~ 157 (621)
+. +..++|+||++++|.++|+.+|+-.. . ..+ .+.+ ...+..+..++||++|++++
T Consensus 84 d~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aI 163 (256)
T COG4598 84 DKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAI 163 (256)
T ss_pred CHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHH
Confidence 00 12478999999999999999998541 1 110 1111 11233467889999999999
Q ss_pred ccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceee
Q 038045 158 SRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTET 237 (621)
Q Consensus 158 ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~ 237 (621)
+|++.+||.++|.|||++.||+-+ .--.-++.+++.+.|+|...|||.|..+. ..+..+..++.|.++.
T Consensus 164 ARaLameP~vmLFDEPTSALDPEl-------VgEVLkv~~~LAeEgrTMv~VTHEM~FAR----~Vss~v~fLh~G~iEE 232 (256)
T COG4598 164 ARALAMEPEVMLFDEPTSALDPEL-------VGEVLKVMQDLAEEGRTMVVVTHEMGFAR----DVSSHVIFLHQGKIEE 232 (256)
T ss_pred HHHHhcCCceEeecCCcccCCHHH-------HHHHHHHHHHHHHhCCeEEEEeeehhHHH----hhhhheEEeecceecc
Confidence 999999999999999999999732 33456788889999999999999998876 5566677799999999
Q ss_pred ccCceeEEecCCCC
Q 038045 238 MEQTYDIYLLPPGE 251 (621)
Q Consensus 238 ~~~~aDIYi~P~~~ 251 (621)
.+.+..+|-.|.+.
T Consensus 233 ~G~P~qvf~nP~S~ 246 (256)
T COG4598 233 EGPPEQVFGNPQSP 246 (256)
T ss_pred cCChHHHhcCCCCH
Confidence 99999998666654
No 33
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=1.7e-24 Score=216.34 Aligned_cols=192 Identities=18% Similarity=0.235 Sum_probs=153.0
Q ss_pred ecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc----------ccccc
Q 038045 39 QDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND----------SSRVV 107 (621)
Q Consensus 39 ~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~----------~~R~I 107 (621)
.+++++.++...+++++||++++|+ ++||+||||||||||+++|+|++ |..|.|.++|... .++.+
T Consensus 3 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i 79 (235)
T cd03261 3 LRGLTKSFGGRTVLKGVDLDVRRGE---ILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRM 79 (235)
T ss_pred EEEEEEEECCEEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcce
Confidence 4678888888889999999999999 99999999999999999999999 8999999998631 12468
Q ss_pred cccCCCCcccccchHHHHHHHHhc---CC--------------CccCc-cccccccCccCCceeecCCccEEEEecceec
Q 038045 108 DGNFDDPRLTDYDTLLENVRDLRE---GK--------------PVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYAL 169 (621)
Q Consensus 108 g~vfQdp~l~d~~tV~enL~~L~~---gk--------------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLL 169 (621)
+|+||++.+++..++.+|+.+... +. .+.+. ..+.....+|+|++|++..+++++.+|.+++
T Consensus 80 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lll 159 (235)
T cd03261 80 GMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLL 159 (235)
T ss_pred EEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999999999999999976321 00 01111 1234457889999999999999999999999
Q ss_pred cccccCCCCeeEEecCCchHHHHHHHHHHHHH-cCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 170 SEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQR-VGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 170 lDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~e-rG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
+|||++.||+. ....+.++.+.+.+ .|.|++.++|+++.+. .++|++.++.+|.+...++..++
T Consensus 160 lDEPt~~LD~~-------~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~----~~~d~v~~l~~G~i~~~g~~~~~ 224 (235)
T cd03261 160 YDEPTAGLDPI-------ASGVIDDLIRSLKKELGLTSIMVTHDLDTAF----AIADRIAVLYDGKIVAEGTPEEL 224 (235)
T ss_pred ecCCcccCCHH-------HHHHHHHHHHHHHHhcCcEEEEEecCHHHHH----HhcCEEEEEECCeEEEecCHHHH
Confidence 99999999973 23444444444444 5899999999999876 67788888888887666555554
No 34
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.90 E-value=1.4e-24 Score=230.40 Aligned_cols=194 Identities=18% Similarity=0.125 Sum_probs=161.9
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc------ccccccc
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND------SSRVVDG 109 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~------~~R~Ig~ 109 (621)
.-.+++++.+|.+.+|+++||++++|+ ++||+||||||||||+++|+|++ |+.|.|.++|... ..+.++|
T Consensus 42 i~i~nl~k~y~~~~~l~~is~~i~~Ge---i~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~ 118 (340)
T PRK13536 42 IDLAGVSKSYGDKAVVNGLSFTVASGE---CFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGV 118 (340)
T ss_pred EEEEEEEEEECCEEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEE
Confidence 457889999999999999999999999 99999999999999999999999 9999999999742 2356999
Q ss_pred cCCCCcccccchHHHHHHHHhc--CC--------------CccCc-cccccccCccCCceeecCCccEEEEecceecccc
Q 038045 110 NFDDPRLTDYDTLLENVRDLRE--GK--------------PVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEK 172 (621)
Q Consensus 110 vfQdp~l~d~~tV~enL~~L~~--gk--------------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDE 172 (621)
+||++.+++..++.+|+.+... +. .+.++ ..+.....+|+|+++++..+++++.+|.++++||
T Consensus 119 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDE 198 (340)
T PRK13536 119 VPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDE 198 (340)
T ss_pred EeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 9999999999999999986431 10 01111 1344567889999999999999999999999999
Q ss_pred ccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 173 LRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 173 p~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
|++.||+. ..+.++.+.+.+.+.|.|++.++|+++++. .+||++.++++|.+...++..++
T Consensus 199 Pt~gLD~~-------~r~~l~~~l~~l~~~g~tilisSH~l~e~~----~~~d~i~il~~G~i~~~g~~~~l 259 (340)
T PRK13536 199 PTTGLDPH-------ARHLIWERLRSLLARGKTILLTTHFMEEAE----RLCDRLCVLEAGRKIAEGRPHAL 259 (340)
T ss_pred CCCCCCHH-------HHHHHHHHHHHHHhCCCEEEEECCCHHHHH----HhCCEEEEEECCEEEEEcCHHHH
Confidence 99999973 345666666666667999999999999987 78899999999988877666654
No 35
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=2.8e-24 Score=212.74 Aligned_cols=188 Identities=18% Similarity=0.168 Sum_probs=149.5
Q ss_pred ecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc------ccccccccC
Q 038045 39 QDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND------SSRVVDGNF 111 (621)
Q Consensus 39 ~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~------~~R~Ig~vf 111 (621)
.+++++.++...++++++|++.+|+ ++||+||||||||||+++|+|++ |+.|.|.++|... ..+.++|+|
T Consensus 3 ~~~~~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (220)
T cd03265 3 VENLVKKYGDFEAVRGVSFRVRRGE---IFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVF 79 (220)
T ss_pred EEEEEEEECCEEeeeceeEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEec
Confidence 4567777777889999999999999 99999999999999999999998 8999999998632 124689999
Q ss_pred CCCcccccchHHHHHHHHhc--CC--------------CccCc-cccccccCccCCceeecCCccEEEEecceecccccc
Q 038045 112 DDPRLTDYDTLLENVRDLRE--GK--------------PVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLR 174 (621)
Q Consensus 112 Qdp~l~d~~tV~enL~~L~~--gk--------------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~ 174 (621)
|++.+++..++.+|+..... +. .+.+. ..+.....+|+|+++++..+++++.+|.++++|||+
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt 159 (220)
T cd03265 80 QDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPT 159 (220)
T ss_pred CCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 99999998999999976321 10 01111 134446788999999999999999999999999999
Q ss_pred CCCCeeEEecCCchHHHHHHHHHHHHH-cCCCceehHhHHHHHhccccccchhhhcCCCCceeeccC
Q 038045 175 PLLDLRVSVTGGVHFDLVKRVLRDIQR-VGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQ 240 (621)
Q Consensus 175 s~LDlkV~Vd~~~d~~LirRI~Rdl~e-rG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~ 240 (621)
+.||+. ..+.+..+.+.+.+ .|.+++.++|+.+... ..+|++.++.+|.+...+.
T Consensus 160 ~~LD~~-------~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~----~~~d~i~~l~~G~i~~~~~ 215 (220)
T cd03265 160 IGLDPQ-------TRAHVWEYIEKLKEEFGMTILLTTHYMEEAE----QLCDRVAIIDHGRIIAEGT 215 (220)
T ss_pred cCCCHH-------HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH----HhCCEEEEEeCCEEEEeCC
Confidence 999973 23444455555444 4899999999999886 6677888888887755433
No 36
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.90 E-value=2.3e-24 Score=224.45 Aligned_cols=194 Identities=17% Similarity=0.130 Sum_probs=157.3
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc------ccccccc
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND------SSRVVDG 109 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~------~~R~Ig~ 109 (621)
...+++++.++...+|+++||++++|+ ++||+||||||||||+++|+|++ |+.|.|.++|... .++.++|
T Consensus 5 i~~~~l~~~~~~~~~l~~vsl~i~~Ge---~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~ 81 (303)
T TIGR01288 5 IDLVGVSKSYGDKVVVNDLSFTIARGE---CFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGV 81 (303)
T ss_pred EEEEeEEEEeCCeEEEcceeEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEE
Confidence 456789999888899999999999999 99999999999999999999999 8999999998632 1356899
Q ss_pred cCCCCcccccchHHHHHHHHhc--CC--------------CccCc-cccccccCccCCceeecCCccEEEEecceecccc
Q 038045 110 NFDDPRLTDYDTLLENVRDLRE--GK--------------PVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEK 172 (621)
Q Consensus 110 vfQdp~l~d~~tV~enL~~L~~--gk--------------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDE 172 (621)
++|++.+++..|+.+|+.+... +. .+.++ ..+.....+|+|++|++..+++++.+|.++++||
T Consensus 82 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE 161 (303)
T TIGR01288 82 VPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDE 161 (303)
T ss_pred EeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 9999999999999999975321 10 01111 2344567889999999999999999999999999
Q ss_pred ccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 173 LRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 173 p~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
|++.||+. ..+.+..+.+.+.+.|.|++.++|+++++. .++|++.++.+|.+...++..++
T Consensus 162 Pt~gLD~~-------~~~~l~~~l~~~~~~g~til~~sH~~~~~~----~~~d~i~~l~~G~i~~~g~~~~~ 222 (303)
T TIGR01288 162 PTTGLDPH-------ARHLIWERLRSLLARGKTILLTTHFMEEAE----RLCDRLCVLESGRKIAEGRPHAL 222 (303)
T ss_pred CCcCCCHH-------HHHHHHHHHHHHHhCCCEEEEECCCHHHHH----HhCCEEEEEECCEEEEEcCHHHH
Confidence 99999973 234555556666667999999999999887 67888888888887665555444
No 37
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.90 E-value=2.8e-24 Score=211.94 Aligned_cols=182 Identities=19% Similarity=0.191 Sum_probs=143.0
Q ss_pred ecceeeeeCc--EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc----------ccc
Q 038045 39 QDPLSFEKGF--FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND----------SSR 105 (621)
Q Consensus 39 ~~~lsf~~G~--~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~----------~~R 105 (621)
.+++++.++. ..+++++||++++|+ ++||+||||||||||+++|+|++ |..|.|.++|... .++
T Consensus 4 ~~~l~~~~~~~~~~il~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 4 FEQVSKAYPGGHQPALDNLNFHITKGE---MVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred EEEEEEEecCCCeeEEEeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 4667777743 579999999999999 99999999999999999999999 8999999998632 124
Q ss_pred cccccCCCCcccccchHHHHHHHHhc--C--------------CCccCc-cccccccCccCCceeecCCccEEEEeccee
Q 038045 106 VVDGNFDDPRLTDYDTLLENVRDLRE--G--------------KPVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYA 168 (621)
Q Consensus 106 ~Ig~vfQdp~l~d~~tV~enL~~L~~--g--------------k~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lL 168 (621)
.++|+||++.+++..++.+|+.+... + +.+.+. ..+.....+|+|++|++..+++++.+|.++
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 160 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLL 160 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 68999999999999999999976321 1 011111 234456789999999999999999999999
Q ss_pred ccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCc
Q 038045 169 LSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGH 234 (621)
Q Consensus 169 LlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~ 234 (621)
++|||++.||+. ..+.+.++.+.+.+.|.|++.++|+.+... .++|++.++.+|.
T Consensus 161 llDEPt~~LD~~-------~~~~l~~~l~~~~~~~~tii~vsH~~~~~~----~~~d~i~~l~~G~ 215 (216)
T TIGR00960 161 LADEPTGNLDPE-------LSRDIMRLFEEFNRRGTTVLVATHDINLVE----TYRHRTLTLSRGR 215 (216)
T ss_pred EEeCCCCcCCHH-------HHHHHHHHHHHHHHCCCEEEEEeCCHHHHH----HhCCEEEEEeCCc
Confidence 999999999973 233444455555556899999999998776 5666666666553
No 38
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=2.1e-24 Score=229.05 Aligned_cols=197 Identities=19% Similarity=0.200 Sum_probs=157.0
Q ss_pred eecceeeeeC----cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc---------
Q 038045 38 IQDPLSFEKG----FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS--------- 103 (621)
Q Consensus 38 v~~~lsf~~G----~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~--------- 103 (621)
..+++++.++ ...+|+++||++++|+ ++||+||||||||||+++|+|++ |+.|.|.++|....
T Consensus 3 ~i~~l~~~y~~~~~~~~il~~vsl~i~~Ge---i~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 79 (343)
T PRK11153 3 ELKNISKVFPQGGRTIHALNNVSLHIPAGE---IFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRK 79 (343)
T ss_pred EEEeEEEEeCCCCCceEEEEeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHH
Confidence 3567777776 4689999999999999 99999999999999999999999 89999999986321
Q ss_pred -cccccccCCCCcccccchHHHHHHHHhc--CC--------------CccCc-cccccccCccCCceeecCCccEEEEec
Q 038045 104 -SRVVDGNFDDPRLTDYDTLLENVRDLRE--GK--------------PVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEG 165 (621)
Q Consensus 104 -~R~Ig~vfQdp~l~d~~tV~enL~~L~~--gk--------------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG 165 (621)
++.++|+||++.+++..++.+|+.+... +. .+.+. ..+....++|+|++|++..+++++.+|
T Consensus 80 ~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p 159 (343)
T PRK11153 80 ARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNP 159 (343)
T ss_pred HhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCC
Confidence 3469999999999999999999986431 10 01111 123446788999999999999999999
Q ss_pred ceeccccccCCCCeeEEecCCchHHHHHHHHHHH-HHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 166 IYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDI-QRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 166 ~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl-~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
.++++|||++.||+. ....+.++.+.+ ++.|.|++.++|+++.+. .++|++.++.+|.+...+...++
T Consensus 160 ~iLlLDEPts~LD~~-------~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~----~~~d~v~~l~~G~i~~~g~~~~~ 228 (343)
T PRK11153 160 KVLLCDEATSALDPA-------TTRSILELLKDINRELGLTIVLITHEMDVVK----RICDRVAVIDAGRLVEQGTVSEV 228 (343)
T ss_pred CEEEEeCCcccCCHH-------HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH----HhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999973 234444545554 345999999999999887 77888889999988776666666
Q ss_pred EecC
Q 038045 245 YLLP 248 (621)
Q Consensus 245 Yi~P 248 (621)
+..|
T Consensus 229 ~~~~ 232 (343)
T PRK11153 229 FSHP 232 (343)
T ss_pred HhCC
Confidence 4333
No 39
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.1e-24 Score=229.87 Aligned_cols=197 Identities=17% Similarity=0.167 Sum_probs=159.5
Q ss_pred ceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-----------cccccc
Q 038045 41 PLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-----------SSRVVD 108 (621)
Q Consensus 41 ~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-----------~~R~Ig 108 (621)
++++.+|.+.+ ++||++++|+ +++|+||||||||||+++|+|++ |+.|.|.++|... .++.++
T Consensus 5 ~l~k~~~~~~~--~vsl~i~~Ge---~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~ 79 (352)
T PRK11144 5 NFKQQLGDLCL--TVNLTLPAQG---ITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIG 79 (352)
T ss_pred EEEEEeCCEEE--EEEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEE
Confidence 67777776543 8999999999 99999999999999999999999 8999999998531 135799
Q ss_pred ccCCCCcccccchHHHHHHHHhcCC----------CccC-ccccccccCccCCceeecCCccEEEEecceeccccccCCC
Q 038045 109 GNFDDPRLTDYDTLLENVRDLREGK----------PVQV-PIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLL 177 (621)
Q Consensus 109 ~vfQdp~l~d~~tV~enL~~L~~gk----------~V~~-p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~L 177 (621)
|+||++.+|+++++.+|+.+..... .+.+ +..+.....+|+|++|+++.+++++.+|.++++|||++.|
T Consensus 80 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 80 YVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred EEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 9999999999999999998632110 1112 2245567889999999999999999999999999999999
Q ss_pred CeeEEecCCchHHHHHHHHHHH-HHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEEecCCCCCc
Q 038045 178 DLRVSVTGGVHFDLVKRVLRDI-QRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIYLLPPGEDP 253 (621)
Q Consensus 178 DlkV~Vd~~~d~~LirRI~Rdl-~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIYi~P~~~~~ 253 (621)
|... .+.+..+.+.+ ++.|.|++.++|+++++. .++|++.++.+|.+.+.++..++|-.|...+.
T Consensus 160 D~~~-------~~~l~~~L~~l~~~~g~tii~vTHd~~~~~----~~~d~i~~l~~G~i~~~g~~~~i~~~p~~~~~ 225 (352)
T PRK11144 160 DLPR-------KRELLPYLERLAREINIPILYVSHSLDEIL----RLADRVVVLEQGKVKAFGPLEEVWASSAMRPW 225 (352)
T ss_pred CHHH-------HHHHHHHHHHHHHhcCCeEEEEecCHHHHH----HhCCEEEEEeCCEEEEecCHHHHHhCcchhhh
Confidence 9732 23333444443 445899999999999887 78899999999999999999999877776543
No 40
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.90 E-value=2.9e-24 Score=214.28 Aligned_cols=192 Identities=18% Similarity=0.224 Sum_probs=153.0
Q ss_pred ecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc--------cccccc
Q 038045 39 QDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS--------SRVVDG 109 (621)
Q Consensus 39 ~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~--------~R~Ig~ 109 (621)
.+++++.++...+++++||++++|+ +++|+||||||||||+++|+|++ |..|.|.++|.... ++.++|
T Consensus 3 ~~~l~~~~~~~~~l~~vsl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (236)
T cd03219 3 VRGLTKRFGGLVALDDVSFSVRPGE---IHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGR 79 (236)
T ss_pred eeeeEEEECCEEEecCceEEecCCc---EEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEE
Confidence 4678888887889999999999999 99999999999999999999998 89999999986321 235899
Q ss_pred cCCCCcccccchHHHHHHHHhcC--C------------------------CccCc-cccccccCccCCceeecCCccEEE
Q 038045 110 NFDDPRLTDYDTLLENVRDLREG--K------------------------PVQVP-IYDFESSSRTGYRTVEVPSSRIVI 162 (621)
Q Consensus 110 vfQdp~l~d~~tV~enL~~L~~g--k------------------------~V~~p-~yd~~~~~rsggq~qrVa~ArVLI 162 (621)
+||++.+++..++.+|+.+.... . ...+. ..+.....+|+|+++++..+++++
T Consensus 80 v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~ 159 (236)
T cd03219 80 TFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALA 159 (236)
T ss_pred EecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHh
Confidence 99999999999999999763211 0 00111 123445678999999999999999
Q ss_pred EecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCce
Q 038045 163 IEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTY 242 (621)
Q Consensus 163 vEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~a 242 (621)
.+|.++++|||++.||+. ....+.++.+.+.+.|.|++.++|+.+... .++|++.++.+|.+...+...
T Consensus 160 ~~p~llllDEPt~~LD~~-------~~~~l~~~l~~~~~~~~tii~vsH~~~~~~----~~~d~i~~l~~G~i~~~~~~~ 228 (236)
T cd03219 160 TDPKLLLLDEPAAGLNPE-------ETEELAELIRELRERGITVLLVEHDMDVVM----SLADRVTVLDQGRVIAEGTPD 228 (236)
T ss_pred cCCCEEEEcCCcccCCHH-------HHHHHHHHHHHHHHCCCEEEEEecCHHHHH----HhCCEEEEEeCCEEEeecCHH
Confidence 999999999999999973 234555555565557899999999999886 677888888888876555554
Q ss_pred eE
Q 038045 243 DI 244 (621)
Q Consensus 243 DI 244 (621)
++
T Consensus 229 ~~ 230 (236)
T cd03219 229 EV 230 (236)
T ss_pred Hh
Confidence 44
No 41
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=9e-24 Score=215.48 Aligned_cols=183 Identities=17% Similarity=0.117 Sum_probs=142.3
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc----cccccccC
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS----SRVVDGNF 111 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~----~R~Ig~vf 111 (621)
...++++|.|+...||++|||.+++|+ +++|+||||||||||+|.|.|++ |..|.|.+.|.... ...+||++
T Consensus 5 i~v~nl~v~y~~~~vl~~i~l~v~~G~---~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVP 81 (254)
T COG1121 5 IEVENLTVSYGNRPVLEDISLSVEKGE---ITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVP 81 (254)
T ss_pred EEEeeeEEEECCEeeeeccEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcC
Confidence 457889999996589999999999999 99999999999999999999988 99999999987422 24699999
Q ss_pred CCCc--ccccchHHHHHHHHhcCC--------------------CccCcc-ccccccCccCCceeecCCccEEEEeccee
Q 038045 112 DDPR--LTDYDTLLENVRDLREGK--------------------PVQVPI-YDFESSSRTGYRTVEVPSSRIVIIEGIYA 168 (621)
Q Consensus 112 Qdp~--l~d~~tV~enL~~L~~gk--------------------~V~~p~-yd~~~~~rsggq~qrVa~ArVLIvEG~lL 168 (621)
|... .--..||++.+...+..+ .+.... .+...+++||||.|||-+||+|+-+|.++
T Consensus 82 Q~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~ll 161 (254)
T COG1121 82 QKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLL 161 (254)
T ss_pred cccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEE
Confidence 9652 222368888887642111 111121 33456899999999999999999999999
Q ss_pred ccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCC
Q 038045 169 LSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEG 233 (621)
Q Consensus 169 LlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg 233 (621)
++|||+..+|+. ....+-++...+++.|+|+..|+||+..+. ..+|++..+...
T Consensus 162 lLDEP~~gvD~~-------~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~----~~~D~vi~Ln~~ 215 (254)
T COG1121 162 LLDEPFTGVDVA-------GQKEIYDLLKELRQEGKTVLMVTHDLGLVM----AYFDRVICLNRH 215 (254)
T ss_pred EecCCcccCCHH-------HHHHHHHHHHHHHHCCCEEEEEeCCcHHhH----hhCCEEEEEcCe
Confidence 999999999974 233444555555556999999999999887 555555544433
No 42
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.90 E-value=4.8e-24 Score=210.54 Aligned_cols=189 Identities=14% Similarity=0.125 Sum_probs=150.1
Q ss_pred ecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc--------ccccccc
Q 038045 39 QDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND--------SSRVVDG 109 (621)
Q Consensus 39 ~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~--------~~R~Ig~ 109 (621)
.+++++.++...+++++||++++|+ ++||+||||||||||+++|+|++ |+.|.|.++|... .++.++|
T Consensus 3 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (222)
T cd03224 3 VENLNAGYGKSQILFGVSLTVPEGE---IVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGY 79 (222)
T ss_pred EeeEEeecCCeeEeeeeeEEEcCCe---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEE
Confidence 4677888877789999999999999 99999999999999999999999 8999999998632 1245899
Q ss_pred cCCCCcccccchHHHHHHHHhcCC--------------Cc-cC-ccccccccCccCCceeecCCccEEEEecceeccccc
Q 038045 110 NFDDPRLTDYDTLLENVRDLREGK--------------PV-QV-PIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKL 173 (621)
Q Consensus 110 vfQdp~l~d~~tV~enL~~L~~gk--------------~V-~~-p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp 173 (621)
+||++.+++.+++.+|+.+..... .+ .+ ...+.....+|+|+++++..+++++.+|.++++|||
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 159 (222)
T cd03224 80 VPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEP 159 (222)
T ss_pred eccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 999999999999999997642110 01 01 113344567899999999999999999999999999
Q ss_pred cCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCc
Q 038045 174 RPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQT 241 (621)
Q Consensus 174 ~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~ 241 (621)
++.||.. ..+.+.++.+.+.+.|.|++.++|+.+... .++|++.++.+|.+...+..
T Consensus 160 t~~LD~~-------~~~~l~~~l~~~~~~~~tiii~sH~~~~~~----~~~d~i~~l~~G~i~~~~~~ 216 (222)
T cd03224 160 SEGLAPK-------IVEEIFEAIRELRDEGVTILLVEQNARFAL----EIADRAYVLERGRVVLEGTA 216 (222)
T ss_pred cccCCHH-------HHHHHHHHHHHHHHCCCEEEEEeCCHHHHH----HhccEEEEeeCCeEEEeCCH
Confidence 9999973 234444555555557899999999998876 67788888888877654443
No 43
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.90 E-value=4.6e-24 Score=212.32 Aligned_cols=192 Identities=19% Similarity=0.210 Sum_probs=152.6
Q ss_pred ecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc--------ccccccc
Q 038045 39 QDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND--------SSRVVDG 109 (621)
Q Consensus 39 ~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~--------~~R~Ig~ 109 (621)
.+++++.++...+++++||++.+|+ ++||+||||||||||+++|+|++ |..|.|.++|... .++.++|
T Consensus 3 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (232)
T cd03218 3 AENLSKRYGKRKVVNGVSLSVKQGE---IVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGY 79 (232)
T ss_pred EEEEEEEeCCEEeeccceeEecCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEE
Confidence 4678888888889999999999999 99999999999999999999999 8999999998632 1235899
Q ss_pred cCCCCcccccchHHHHHHHHhc--CC--------------CccC-ccccccccCccCCceeecCCccEEEEecceecccc
Q 038045 110 NFDDPRLTDYDTLLENVRDLRE--GK--------------PVQV-PIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEK 172 (621)
Q Consensus 110 vfQdp~l~d~~tV~enL~~L~~--gk--------------~V~~-p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDE 172 (621)
+||++.+++..++.+|+..... +. .+.+ ...+.....+|+|+++++..+++++.+|.++++||
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE 159 (232)
T cd03218 80 LPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDE 159 (232)
T ss_pred ecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 9999999999999999976321 10 0111 11234456789999999999999999999999999
Q ss_pred ccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 173 LRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 173 p~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
|++.||.. ..+.+.++.+.+.+.|.|++.++|+.+... ..+|++.++.+|.+...++..++
T Consensus 160 Pt~~LD~~-------~~~~~~~~l~~~~~~~~tii~~sH~~~~~~----~~~d~i~~l~~G~i~~~~~~~~~ 220 (232)
T cd03218 160 PFAGVDPI-------AVQDIQKIIKILKDRGIGVLITDHNVRETL----SITDRAYIIYEGKVLAEGTPEEI 220 (232)
T ss_pred CcccCCHH-------HHHHHHHHHHHHHHCCCEEEEEeCCHHHHH----HhCCEEEEEECCeEEEEeCHHHh
Confidence 99999973 234555555565567899999999998876 67788888888877654444443
No 44
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.90 E-value=3.2e-24 Score=223.37 Aligned_cols=185 Identities=15% Similarity=0.166 Sum_probs=150.7
Q ss_pred eCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc------ccccccccCCCCcccc
Q 038045 46 KGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND------SSRVVDGNFDDPRLTD 118 (621)
Q Consensus 46 ~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~------~~R~Ig~vfQdp~l~d 118 (621)
||.+.+|+++||++++|+ ++||+||||||||||+++|+|++ |+.|.|.++|... .++.++|++|++.+++
T Consensus 3 y~~~~~l~~vs~~i~~Ge---~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~ 79 (302)
T TIGR01188 3 YGDFKAVDGVNFKVREGE---VFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDE 79 (302)
T ss_pred eCCeeEEeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCC
Confidence 456789999999999999 99999999999999999999999 8999999999642 1346899999999999
Q ss_pred cchHHHHHHHHhc--CC--------------CccCc-cccccccCccCCceeecCCccEEEEecceeccccccCCCCeeE
Q 038045 119 YDTLLENVRDLRE--GK--------------PVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRV 181 (621)
Q Consensus 119 ~~tV~enL~~L~~--gk--------------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV 181 (621)
.+|+.+|+.+... +. .+.+. ..+.....+|+|+++++..+++++.+|.++++|||++.||+.
T Consensus 80 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~- 158 (302)
T TIGR01188 80 DLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPR- 158 (302)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHH-
Confidence 9999999986421 10 01111 234456788999999999999999999999999999999973
Q ss_pred EecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 182 SVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 182 ~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
..+.++.+.+.+.+.|.|++.++|++.++. ..+|++.++.+|.+...++..++
T Consensus 159 ------~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~----~~~d~v~~l~~G~i~~~g~~~~l 211 (302)
T TIGR01188 159 ------TRRAIWDYIRALKEEGVTILLTTHYMEEAD----KLCDRIAIIDHGRIIAEGTPEEL 211 (302)
T ss_pred ------HHHHHHHHHHHHHhCCCEEEEECCCHHHHH----HhCCEEEEEECCEEEEECCHHHH
Confidence 345556666666667999999999999887 77888889999888766555443
No 45
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=4.3e-24 Score=209.50 Aligned_cols=182 Identities=19% Similarity=0.139 Sum_probs=147.4
Q ss_pred eecceeeeeCcEE--EEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc--ccccccccCC
Q 038045 38 IQDPLSFEKGFFV--VIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND--SSRVVDGNFD 112 (621)
Q Consensus 38 v~~~lsf~~G~~~--~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~--~~R~Ig~vfQ 112 (621)
...+++.+|.... +++++|+.|.+|+ +|.++||||||||||++.++|+. |..|.|.+||... +-..-|.|||
T Consensus 5 ~~~~~sl~y~g~~~~~le~vsL~ia~ge---~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ 81 (259)
T COG4525 5 NVSHLSLSYEGKPRSALEDVSLTIASGE---LVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQ 81 (259)
T ss_pred ehhheEEecCCcchhhhhccceeecCCC---EEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEec
Confidence 4556666666555 9999999999999 99999999999999999999999 9999999999742 2234688999
Q ss_pred CCcccccchHHHHHHHHhcCC----------------CccCcccc-ccccCccCCceeecCCccEEEEecceeccccccC
Q 038045 113 DPRLTDYDTLLENVRDLREGK----------------PVQVPIYD-FESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRP 175 (621)
Q Consensus 113 dp~l~d~~tV~enL~~L~~gk----------------~V~~p~yd-~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s 175 (621)
++.++||+++.+|+++...-. .+.+..++ +...++|||++|++.++|++.+||.++|+|||+.
T Consensus 82 ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfg 161 (259)
T COG4525 82 NEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFG 161 (259)
T ss_pred cCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchh
Confidence 999999999999999854221 23333444 3457899999999999999999999999999999
Q ss_pred CCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCC
Q 038045 176 LLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPE 232 (621)
Q Consensus 176 ~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~e 232 (621)
.+|.. ...++..-+...+++.|+.+..|||+++|+. ..+++..+|..
T Consensus 162 AlDa~------tRe~mQelLldlw~~tgk~~lliTH~ieEAl----flatrLvvlsp 208 (259)
T COG4525 162 ALDAL------TREQMQELLLDLWQETGKQVLLITHDIEEAL----FLATRLVVLSP 208 (259)
T ss_pred hHHHH------HHHHHHHHHHHHHHHhCCeEEEEeccHHHHH----hhhheeEEecC
Confidence 99963 2334455566678889999999999999997 55555555553
No 46
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=5.9e-24 Score=209.22 Aligned_cols=184 Identities=22% Similarity=0.244 Sum_probs=145.5
Q ss_pred ecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-----ccccccccCC
Q 038045 39 QDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-----SSRVVDGNFD 112 (621)
Q Consensus 39 ~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-----~~R~Ig~vfQ 112 (621)
.+++++.++...+++++||++++|+ ++||+||||||||||+++|+|++ |..|.|.++|... ..+.++|+||
T Consensus 3 ~~~l~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q 79 (213)
T cd03259 3 LKGLSKTYGSVRALDDLSLTVEPGE---FLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQ 79 (213)
T ss_pred eeeeEEEeCCeeeecceeEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcC
Confidence 4577888877889999999999999 99999999999999999999999 8999999998632 2346899999
Q ss_pred CCcccccchHHHHHHHHhc--C--------------CCccCc-cccccccCccCCceeecCCccEEEEecceeccccccC
Q 038045 113 DPRLTDYDTLLENVRDLRE--G--------------KPVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRP 175 (621)
Q Consensus 113 dp~l~d~~tV~enL~~L~~--g--------------k~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s 175 (621)
++.+++..++.+|+..... + ..+.+. ..+.....+|+|+++++..+++++.+|.++++|||++
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~ 159 (213)
T cd03259 80 DYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLS 159 (213)
T ss_pred chhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999988999999975321 1 001111 1234457889999999999999999999999999999
Q ss_pred CCCeeEEecCCchHHHHHHHHHHHHH-cCCCceehHhHHHHHhccccccchhhhcCCCCcee
Q 038045 176 LLDLRVSVTGGVHFDLVKRVLRDIQR-VGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTE 236 (621)
Q Consensus 176 ~LDlkV~Vd~~~d~~LirRI~Rdl~e-rG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie 236 (621)
.||+. ....+.++.+.+.+ .|.|++.++|+.+... ..+|++.++.+|.+.
T Consensus 160 ~LD~~-------~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~----~~~d~v~~l~~G~i~ 210 (213)
T cd03259 160 ALDAK-------LREELREELKELQRELGITTIYVTHDQEEAL----ALADRIAVMNEGRIV 210 (213)
T ss_pred cCCHH-------HHHHHHHHHHHHHHHcCCEEEEEecCHHHHH----HhcCEEEEEECCEEE
Confidence 99973 23444555555444 5899999999998776 566777777776553
No 47
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.89 E-value=8.5e-25 Score=215.17 Aligned_cols=193 Identities=18% Similarity=0.208 Sum_probs=159.9
Q ss_pred ecceeeeeCcEE-EEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc------cccccccc
Q 038045 39 QDPLSFEKGFFV-VIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND------SSRVVDGN 110 (621)
Q Consensus 39 ~~~lsf~~G~~~-~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~------~~R~Ig~v 110 (621)
+.+++..|+..+ +++++||++++|+ |+||.|+|||||||++|+|++++ |+.|.|.+||+.. .++.+|..
T Consensus 4 v~~l~K~y~~~v~AvrdVSF~ae~Ge---i~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl 80 (245)
T COG4555 4 VTDLTKSYGSKVQAVRDVSFEAEEGE---ITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVL 80 (245)
T ss_pred eeehhhhccCHHhhhhheeEEeccce---EEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhccee
Confidence 445666666666 8999999999999 99999999999999999999999 9999999999843 24689999
Q ss_pred CCCCcccccchHHHHHHHHhc-----CCCc-----------cC-ccccccccCccCCceeecCCccEEEEecceeccccc
Q 038045 111 FDDPRLTDYDTLLENVRDLRE-----GKPV-----------QV-PIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKL 173 (621)
Q Consensus 111 fQdp~l~d~~tV~enL~~L~~-----gk~V-----------~~-p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp 173 (621)
|..-.+|+.+|++|||.++.. ++.+ .+ ...+.+....|.|.+|+|++||+++-+|.++++|||
T Consensus 81 ~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP 160 (245)
T COG4555 81 FGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEP 160 (245)
T ss_pred cCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCC
Confidence 988889999999999998642 1111 11 124556678889999999999999999999999999
Q ss_pred cCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEE
Q 038045 174 RPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIY 245 (621)
Q Consensus 174 ~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIY 245 (621)
++.||+. ..+.++.+.+.+++.|..+++.+|.++++. ..||++.+++.|.+.-.++...++
T Consensus 161 ~sGLDi~-------~~r~~~dfi~q~k~egr~viFSSH~m~Eve----alCDrvivlh~Gevv~~gs~~~l~ 221 (245)
T COG4555 161 TSGLDIR-------TRRKFHDFIKQLKNEGRAVIFSSHIMQEVE----ALCDRVIVLHKGEVVLEGSIEALD 221 (245)
T ss_pred CCCccHH-------HHHHHHHHHHHhhcCCcEEEEecccHHHHH----HhhheEEEEecCcEEEcCCHHHHH
Confidence 9999973 234556666666777999999999999998 899999999999888777766654
No 48
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.89 E-value=6.6e-24 Score=221.02 Aligned_cols=193 Identities=13% Similarity=0.099 Sum_probs=158.8
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc------cccccc
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS------SRVVDG 109 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~------~R~Ig~ 109 (621)
...+++++.+|...+|+++||++++|+ ++||+||||||||||+++|+|++ |+.|.|.++|.... .+.++|
T Consensus 3 l~~~~l~~~~~~~~~l~~is~~i~~Ge---i~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~ 79 (301)
T TIGR03522 3 IRVSSLTKLYGTQNALDEVSFEAQKGR---IVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGY 79 (301)
T ss_pred EEEEEEEEEECCEEEEEEeEEEEeCCe---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEE
Confidence 346788888888999999999999999 99999999999999999999998 89999999996421 246899
Q ss_pred cCCCCcccccchHHHHHHHHhcCC----------------CccCc-cccccccCccCCceeecCCccEEEEecceecccc
Q 038045 110 NFDDPRLTDYDTLLENVRDLREGK----------------PVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEK 172 (621)
Q Consensus 110 vfQdp~l~d~~tV~enL~~L~~gk----------------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDE 172 (621)
++|++.+++.+++.+|+.+..... .+.+. ..+.....+|+|+++++..+++++.+|.++++||
T Consensus 80 ~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDE 159 (301)
T TIGR03522 80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDE 159 (301)
T ss_pred ecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 999999999999999998643110 01111 2345567889999999999999999999999999
Q ss_pred ccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 173 LRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 173 p~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
|++.||+. ..+.++.+.+.+.+ +.|++.++|++++.. .++|++.++++|.+...++..++
T Consensus 160 Pt~gLD~~-------~~~~l~~~l~~~~~-~~tiii~sH~l~~~~----~~~d~i~~l~~G~i~~~g~~~~~ 219 (301)
T TIGR03522 160 PTTGLDPN-------QLVEIRNVIKNIGK-DKTIILSTHIMQEVE----AICDRVIIINKGKIVADKKLDEL 219 (301)
T ss_pred CcccCCHH-------HHHHHHHHHHHhcC-CCEEEEEcCCHHHHH----HhCCEEEEEECCEEEEeCCHHHH
Confidence 99999973 34555556666544 789999999999887 78899999999988877666665
No 49
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=8.4e-24 Score=212.10 Aligned_cols=194 Identities=22% Similarity=0.229 Sum_probs=153.5
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-----cccccccc
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-----SSRVVDGN 110 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-----~~R~Ig~v 110 (621)
...+++++.++...+++++||++++|+ ++||+||||||||||+++|+|++ |..|.|.++|... ..+.++|+
T Consensus 3 l~~~~l~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v 79 (239)
T cd03296 3 IEVRNVSKRFGDFVALDDVSLDIPSGE---LVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFV 79 (239)
T ss_pred EEEEeEEEEECCEEeeeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEE
Confidence 346788888888889999999999999 99999999999999999999999 8999999998632 13468999
Q ss_pred CCCCcccccchHHHHHHHHhc--CC----C--------------ccCc-cccccccCccCCceeecCCccEEEEecceec
Q 038045 111 FDDPRLTDYDTLLENVRDLRE--GK----P--------------VQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYAL 169 (621)
Q Consensus 111 fQdp~l~d~~tV~enL~~L~~--gk----~--------------V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLL 169 (621)
+|++.+++..++.+|+.+... +. . +.+. ..+.....+|+|++|++..+++++.+|.+++
T Consensus 80 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll 159 (239)
T cd03296 80 FQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLL 159 (239)
T ss_pred ecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999988999999975321 10 0 0111 1233456789999999999999999999999
Q ss_pred cccccCCCCeeEEecCCchHHHHHHHHHHHHH-cCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 170 SEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQR-VGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 170 lDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~e-rG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
+|||++.||+. ..+.+..+.+.+.+ .|.|++.++|+.+... ..+|++.++.+|.+...+...++
T Consensus 160 lDEP~~~LD~~-------~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~----~~~d~i~~l~~G~i~~~~~~~~~ 224 (239)
T cd03296 160 LDEPFGALDAK-------VRKELRRWLRRLHDELHVTTVFVTHDQEEAL----EVADRVVVMNKGRIEQVGTPDEV 224 (239)
T ss_pred EcCCcccCCHH-------HHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH----HhCCEEEEEECCeEEEecCHHHH
Confidence 99999999973 23444455555444 4899999999998776 66788888888887666555554
No 50
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.89 E-value=9.8e-24 Score=206.93 Aligned_cols=184 Identities=18% Similarity=0.178 Sum_probs=146.9
Q ss_pred ecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-----ccccccccCC
Q 038045 39 QDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-----SSRVVDGNFD 112 (621)
Q Consensus 39 ~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-----~~R~Ig~vfQ 112 (621)
.+++++.++...+++++||++++|+ +++|+||||||||||+++|+|++ |..|.|.++|... ..+.++|++|
T Consensus 3 ~~~l~~~~~~~~~l~~~~~~i~~G~---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 79 (208)
T cd03268 3 TNDLTKTYGKKRVLDDISLHVKKGE---IYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIE 79 (208)
T ss_pred EEEEEEEECCeEeEeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecC
Confidence 4578888877889999999999999 99999999999999999999999 8999999998742 1346899999
Q ss_pred CCcccccchHHHHHHHHhc--CC----------CccCc-cccccccCccCCceeecCCccEEEEecceeccccccCCCCe
Q 038045 113 DPRLTDYDTLLENVRDLRE--GK----------PVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDL 179 (621)
Q Consensus 113 dp~l~d~~tV~enL~~L~~--gk----------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDl 179 (621)
++.+++..++.+|+..... +. .+.+. ..+.....+|+|+++++..+++++.+|.++++|||++.||+
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~ 159 (208)
T cd03268 80 APGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDP 159 (208)
T ss_pred CCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCH
Confidence 9999999999999976431 10 01111 12344577899999999999999999999999999999997
Q ss_pred eEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCcee
Q 038045 180 RVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTE 236 (621)
Q Consensus 180 kV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie 236 (621)
. ..+.+..+.+.+.+.|.|++.++|+.+... .++|++.++.+|.+.
T Consensus 160 ~-------~~~~l~~~l~~~~~~~~tii~~tH~~~~~~----~~~d~v~~l~~g~i~ 205 (208)
T cd03268 160 D-------GIKELRELILSLRDQGITVLISSHLLSEIQ----KVADRIGIINKGKLI 205 (208)
T ss_pred H-------HHHHHHHHHHHHHHCCCEEEEEcCCHHHHH----HhcCEEEEEECCEEE
Confidence 3 234455555555557899999999998876 566777777777654
No 51
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=1e-23 Score=207.17 Aligned_cols=184 Identities=17% Similarity=0.204 Sum_probs=147.0
Q ss_pred ecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc---ccccccccCCCC
Q 038045 39 QDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND---SSRVVDGNFDDP 114 (621)
Q Consensus 39 ~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~---~~R~Ig~vfQdp 114 (621)
.+++++.++...+++++||++.+|+ +++|+||||||||||+++|+|++ |..|.|.++|... ..+.++|++|++
T Consensus 3 ~~~l~~~~~~~~~l~~v~~~i~~G~---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~ 79 (210)
T cd03269 3 VENVTKRFGRVTALDDISFSVEKGE---IFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEER 79 (210)
T ss_pred EEEEEEEECCEEEEeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCC
Confidence 4567788877889999999999999 99999999999999999999998 8999999999642 235789999999
Q ss_pred cccccchHHHHHHHHhc--CC--------------CccCc-cccccccCccCCceeecCCccEEEEecceeccccccCCC
Q 038045 115 RLTDYDTLLENVRDLRE--GK--------------PVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLL 177 (621)
Q Consensus 115 ~l~d~~tV~enL~~L~~--gk--------------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~L 177 (621)
.+++..++.+|+..... +. ...++ ..+.....+|+|+++++..+++++.+|.++++|||++.+
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~L 159 (210)
T cd03269 80 GLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGL 159 (210)
T ss_pred cCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 99998999999876421 10 01111 123345678999999999999999999999999999999
Q ss_pred CeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCcee
Q 038045 178 DLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTE 236 (621)
Q Consensus 178 DlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie 236 (621)
|+. ..+.+.++.+.+.+.|.|++.++|+.+... .++|++.++.+|.+.
T Consensus 160 D~~-------~~~~~~~~l~~~~~~~~tii~~sH~~~~~~----~~~d~i~~l~~g~i~ 207 (210)
T cd03269 160 DPV-------NVELLKDVIRELARAGKTVILSTHQMELVE----ELCDRVLLLNKGRAV 207 (210)
T ss_pred CHH-------HHHHHHHHHHHHHHCCCEEEEECCCHHHHH----HhhhEEEEEeCCEEE
Confidence 972 234555555555566899999999998876 566777777776554
No 52
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.89 E-value=8.2e-24 Score=223.82 Aligned_cols=187 Identities=17% Similarity=0.249 Sum_probs=151.1
Q ss_pred EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc----------ccccccccCCCC--c
Q 038045 49 FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND----------SSRVVDGNFDDP--R 115 (621)
Q Consensus 49 ~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~----------~~R~Ig~vfQdp--~ 115 (621)
..+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|... .++.++|+||+| .
T Consensus 34 ~~~l~~vsl~i~~Ge---~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~ 110 (331)
T PRK15079 34 LKAVDGVTLRLYEGE---TLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLAS 110 (331)
T ss_pred eEEEeeEEEEEcCCC---EEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhh
Confidence 679999999999999 99999999999999999999999 8999999998732 134699999998 5
Q ss_pred ccccchHHHHHHHHhc----C--------------CCccC-c-cccccccCccCCceeecCCccEEEEecceeccccccC
Q 038045 116 LTDYDTLLENVRDLRE----G--------------KPVQV-P-IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRP 175 (621)
Q Consensus 116 l~d~~tV~enL~~L~~----g--------------k~V~~-p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s 175 (621)
+++.+++.+|+.+... + +.+.+ + ..+..++++|||++|++.++++++.+|.++++|||++
T Consensus 111 l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts 190 (331)
T PRK15079 111 LNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVS 190 (331)
T ss_pred cCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 7888999999875221 0 01222 1 2456678999999999999999999999999999999
Q ss_pred CCCeeEEecCCchHHHHHHHHHHH-HHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEEecCC
Q 038045 176 LLDLRVSVTGGVHFDLVKRVLRDI-QRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIYLLPP 249 (621)
Q Consensus 176 ~LDlkV~Vd~~~d~~LirRI~Rdl-~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIYi~P~ 249 (621)
.||... ...+.++.+.+ ++.|.|++.|+|++..+. .++|++.+|+.|.+...+...+++-.|.
T Consensus 191 ~LD~~~-------~~~i~~lL~~l~~~~~~til~iTHdl~~~~----~~~dri~vl~~G~ive~g~~~~i~~~~~ 254 (331)
T PRK15079 191 ALDVSI-------QAQVVNLLQQLQREMGLSLIFIAHDLAVVK----HISDRVLVMYLGHAVELGTYDEVYHNPL 254 (331)
T ss_pred cCCHHH-------HHHHHHHHHHHHHHcCCEEEEEeCCHHHHH----HhCCEEEEEECCEEEEEcCHHHHHcCCC
Confidence 999742 22333344443 445999999999999987 7889999999999988777777754443
No 53
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=9e-24 Score=209.13 Aligned_cols=185 Identities=19% Similarity=0.207 Sum_probs=145.8
Q ss_pred ecceeeeeCc----EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc--ccccccccC
Q 038045 39 QDPLSFEKGF----FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND--SSRVVDGNF 111 (621)
Q Consensus 39 ~~~lsf~~G~----~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~--~~R~Ig~vf 111 (621)
.+++++.++. ..+++++||++++|+ ++||+||||||||||+++|+|++ |..|.|.++|... ..+.++|++
T Consensus 3 ~~~l~~~~~~~~~~~~il~~vs~~i~~G~---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~ 79 (220)
T cd03293 3 VRNVSKTYGGGGGAVTALEDISLSVEEGE---FVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVF 79 (220)
T ss_pred EEEEEEEcCCCCcceEEEeceeEEEeCCc---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEe
Confidence 3567777766 789999999999999 99999999999999999999998 8999999999643 235789999
Q ss_pred CCCcccccchHHHHHHHHhc--C--------------CCccCc-cccccccCccCCceeecCCccEEEEecceecccccc
Q 038045 112 DDPRLTDYDTLLENVRDLRE--G--------------KPVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLR 174 (621)
Q Consensus 112 Qdp~l~d~~tV~enL~~L~~--g--------------k~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~ 174 (621)
|++.+++..++.+|+..... + +.+.+. ..+.....+|+|+++++..+++++.+|.++++|||+
T Consensus 80 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt 159 (220)
T cd03293 80 QQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPF 159 (220)
T ss_pred cccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 99999988999999875321 1 001111 124456789999999999999999999999999999
Q ss_pred CCCCeeEEecCCchHHHHHHHHHHH-HHcCCCceehHhHHHHHhccccccchhhhcCC--CCceee
Q 038045 175 PLLDLRVSVTGGVHFDLVKRVLRDI-QRVGQEPEEIIQQISETSAKNLSVDQIKAVYP--EGHTET 237 (621)
Q Consensus 175 s~LDlkV~Vd~~~d~~LirRI~Rdl-~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~--eg~Ie~ 237 (621)
+.||+. ..+.+.++.+.+ ++.|.|++.++|+.+... ..+|++.++. +|.+..
T Consensus 160 ~~LD~~-------~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~----~~~d~i~~l~~~~G~i~~ 214 (220)
T cd03293 160 SALDAL-------TREQLQEELLDIWRETGKTVLLVTHDIDEAV----FLADRVVVLSARPGRIVA 214 (220)
T ss_pred CCCCHH-------HHHHHHHHHHHHHHHcCCEEEEEecCHHHHH----HhCCEEEEEECCCCEEEE
Confidence 999973 234444544444 445899999999998776 5667777777 566543
No 54
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=8.1e-24 Score=210.96 Aligned_cols=192 Identities=21% Similarity=0.228 Sum_probs=151.3
Q ss_pred ecceeeeeCcE----EEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc----------
Q 038045 39 QDPLSFEKGFF----VVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS---------- 103 (621)
Q Consensus 39 ~~~lsf~~G~~----~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~---------- 103 (621)
.+++++.++.. .+++++||++++|+ ++||+||||||||||+++|+|++ |..|.|.++|....
T Consensus 4 ~~~l~~~~~~~~~~~~il~~~s~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (233)
T cd03258 4 LKNVSKVFGDTGGKVTALKDVSLSVPKGE---IFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKA 80 (233)
T ss_pred EecceEEccCCCCceeeeecceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHH
Confidence 46777777655 89999999999999 99999999999999999999999 89999999987321
Q ss_pred cccccccCCCCcccccchHHHHHHHHhc--C-C-------------CccCc-cccccccCccCCceeecCCccEEEEecc
Q 038045 104 SRVVDGNFDDPRLTDYDTLLENVRDLRE--G-K-------------PVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGI 166 (621)
Q Consensus 104 ~R~Ig~vfQdp~l~d~~tV~enL~~L~~--g-k-------------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~ 166 (621)
.+.++|++|++.+|+..++.+|+.+... + . .+.+. ..+.....+|+|+++++..+++++.+|.
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 160 (233)
T cd03258 81 RRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPK 160 (233)
T ss_pred HhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 3468999999999999999999975321 1 0 01111 1234456789999999999999999999
Q ss_pred eeccccccCCCCeeEEecCCchHHHHHHHHHHHHH-cCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 167 YALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQR-VGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 167 lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~e-rG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
++++|||++.||+. ....+.++.+.+.+ .|.|++.++|+.+... .++|++.++.+|.+...+...++
T Consensus 161 lllLDEP~~~LD~~-------~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~----~~~d~i~~l~~G~i~~~~~~~~~ 228 (233)
T cd03258 161 VLLCDEATSALDPE-------TTQSILALLRDINRELGLTIVLITHEMEVVK----RICDRVAVMEKGEVVEEGTVEEV 228 (233)
T ss_pred EEEecCCCCcCCHH-------HHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH----HhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999973 23445555555544 4899999999998876 66788888888877655554443
No 55
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.89 E-value=1.1e-23 Score=207.63 Aligned_cols=180 Identities=19% Similarity=0.199 Sum_probs=140.8
Q ss_pred ecceeeeeCc----EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-----------
Q 038045 39 QDPLSFEKGF----FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND----------- 102 (621)
Q Consensus 39 ~~~lsf~~G~----~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~----------- 102 (621)
.+++++.++. ..+++++||++++|+ ++||+||||||||||+++|+|++ |..|.|.++|...
T Consensus 3 ~~~l~~~~~~~~~~~~il~~~s~~i~~G~---~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (218)
T cd03255 3 LKNLSKTYGGGGEKVQALKGVSLSIEKGE---FVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAF 79 (218)
T ss_pred EeeeEEEecCCCcceeEEeeeEEEEcCCC---EEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHH
Confidence 4567777765 789999999999999 99999999999999999999999 8999999998632
Q ss_pred ccccccccCCCCcccccchHHHHHHHHhc--CC--------------CccC-ccccccccCccCCceeecCCccEEEEec
Q 038045 103 SSRVVDGNFDDPRLTDYDTLLENVRDLRE--GK--------------PVQV-PIYDFESSSRTGYRTVEVPSSRIVIIEG 165 (621)
Q Consensus 103 ~~R~Ig~vfQdp~l~d~~tV~enL~~L~~--gk--------------~V~~-p~yd~~~~~rsggq~qrVa~ArVLIvEG 165 (621)
..+.++|++|++.+|+..++.+|+.+... +. .+.+ +..+.....+|+|+++++..+++++.+|
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 159 (218)
T cd03255 80 RRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDP 159 (218)
T ss_pred HhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCC
Confidence 12468999999999999999999976321 10 0111 1124445788999999999999999999
Q ss_pred ceeccccccCCCCeeEEecCCchHHHHHHHHHHHHH-cCCCceehHhHHHHHhccccccchhhhcCCCC
Q 038045 166 IYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQR-VGQEPEEIIQQISETSAKNLSVDQIKAVYPEG 233 (621)
Q Consensus 166 ~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~e-rG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg 233 (621)
.++++|||++.||+. ..+.+.++.+.+.+ .|.|++.++|+.+... .+|++.++.+|
T Consensus 160 ~lllLDEP~~~LD~~-------~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-----~~d~v~~l~~G 216 (218)
T cd03255 160 KIILADEPTGNLDSE-------TGKEVMELLRELNKEAGTTIVVVTHDPELAE-----YADRIIELRDG 216 (218)
T ss_pred CEEEEcCCcccCCHH-------HHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-----hhcEEEEeeCC
Confidence 999999999999973 23445555555544 5899999999987642 45666666555
No 56
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.89 E-value=8.9e-24 Score=207.02 Aligned_cols=181 Identities=14% Similarity=0.156 Sum_probs=142.4
Q ss_pred cceeeeeCc-EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc----ccccccccCCC
Q 038045 40 DPLSFEKGF-FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND----SSRVVDGNFDD 113 (621)
Q Consensus 40 ~~lsf~~G~-~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~----~~R~Ig~vfQd 113 (621)
+++++.++. ..+++++||++++|+ +++|+||||||||||+++|+|++ |..|.|.++|... ..+.++|+||+
T Consensus 3 ~~l~~~~~~~~~~l~~v~~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~ 79 (205)
T cd03226 3 ENISFSYKKGTEILDDLSLDLYAGE---IIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQD 79 (205)
T ss_pred ccEEEEeCCcCceeeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecC
Confidence 467777766 789999999999999 99999999999999999999999 8999999998642 23468999999
Q ss_pred Cc-ccccchHHHHHHHHhc--CC----------CccCc-cccccccCccCCceeecCCccEEEEecceeccccccCCCCe
Q 038045 114 PR-LTDYDTLLENVRDLRE--GK----------PVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDL 179 (621)
Q Consensus 114 p~-l~d~~tV~enL~~L~~--gk----------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDl 179 (621)
+. .+...++.+|+.+... .. .+.+. ..+.....+|+|++|++..+++++.+|.++++|||++.||+
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~ 159 (205)
T cd03226 80 VDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDY 159 (205)
T ss_pred hhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCH
Confidence 75 3445799999976321 10 01111 23445678899999999999999999999999999999997
Q ss_pred eEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCc
Q 038045 180 RVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGH 234 (621)
Q Consensus 180 kV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~ 234 (621)
. ..+.+..+.+.+.+.|.|++.++|+.+... .++|++.++.+|.
T Consensus 160 ~-------~~~~l~~~l~~~~~~~~tii~~sH~~~~~~----~~~d~i~~l~~G~ 203 (205)
T cd03226 160 K-------NMERVGELIRELAAQGKAVIVITHDYEFLA----KVCDRVLLLANGA 203 (205)
T ss_pred H-------HHHHHHHHHHHHHHCCCEEEEEeCCHHHHH----HhCCEEEEEECCE
Confidence 3 234555666666566899999999998876 5666666676654
No 57
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.89 E-value=6.9e-24 Score=206.12 Aligned_cols=191 Identities=17% Similarity=0.210 Sum_probs=156.2
Q ss_pred cceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcc-----cccccccccCCC
Q 038045 40 DPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYN-----DSSRVVDGNFDD 113 (621)
Q Consensus 40 ~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~-----~~~R~Ig~vfQd 113 (621)
.++.|.|+.... ..++.++.|+ +++|+||||||||||++.|+|++ |.+|.|.++|.. +.+|.+.|+||+
T Consensus 5 ~~V~~~y~~~~~--~fdl~v~~ge---~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQE 79 (231)
T COG3840 5 DDVRFSYGHLPM--RFDLTVPAGE---IVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQE 79 (231)
T ss_pred cceEEeeCcceE--EEEEeecCCc---EEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhc
Confidence 455666654332 3456789999 99999999999999999999999 999999999873 556889999999
Q ss_pred CcccccchHHHHHHHHhcC-C---------------CccCccc-cccccCccCCceeecCCccEEEEecceeccccccCC
Q 038045 114 PRLTDYDTLLENVRDLREG-K---------------PVQVPIY-DFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPL 176 (621)
Q Consensus 114 p~l~d~~tV~enL~~L~~g-k---------------~V~~p~y-d~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~ 176 (621)
.++|.++||.+|+...... - .+.+..| ++.+.++|||++|||+.+|+++-+-.++|+|||++.
T Consensus 80 nNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsA 159 (231)
T COG3840 80 NNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSA 159 (231)
T ss_pred cccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhh
Confidence 9999999999999863321 0 1222223 345789999999999999999999999999999999
Q ss_pred CCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEE
Q 038045 177 LDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIY 245 (621)
Q Consensus 177 LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIY 245 (621)
||+.++. +.+.-+.....+++.|+..|+|+.+++. ..++++.++++|.|...+...+.+
T Consensus 160 LdP~LR~------eMl~Lv~~l~~E~~~TllmVTH~~~Da~----~ia~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 160 LDPALRA------EMLALVSQLCDERKMTLLMVTHHPEDAA----RIADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred cCHHHHH------HHHHHHHHHHHhhCCEEEEEeCCHHHHH----HhhhceEEEeCCEEEeeccHHHHh
Confidence 9996533 4555566667889999999999999998 778888889999999888777763
No 58
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.89 E-value=1.3e-23 Score=209.00 Aligned_cols=191 Identities=13% Similarity=0.123 Sum_probs=151.0
Q ss_pred ecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc--------ccccccc
Q 038045 39 QDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND--------SSRVVDG 109 (621)
Q Consensus 39 ~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~--------~~R~Ig~ 109 (621)
.+++++.++...+++++||++++|+ ++||+|+||||||||+++|+|++ |..|.|.++|... ..+.++|
T Consensus 3 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (230)
T TIGR03410 3 VSNLNVYYGQSHILRGVSLEVPKGE---VTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAY 79 (230)
T ss_pred EEeEEEEeCCeEEecceeeEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEE
Confidence 4678888888889999999999999 99999999999999999999999 8999999998632 1246899
Q ss_pred cCCCCcccccchHHHHHHHHhcC--CC-----------cc-C-ccccccccCccCCceeecCCccEEEEecceecccccc
Q 038045 110 NFDDPRLTDYDTLLENVRDLREG--KP-----------VQ-V-PIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLR 174 (621)
Q Consensus 110 vfQdp~l~d~~tV~enL~~L~~g--k~-----------V~-~-p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~ 174 (621)
+||++.+|+..++.+|+.+.... .. .. . ...+.....+|+|+++++..+++++.+|.++++|||+
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt 159 (230)
T TIGR03410 80 VPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPT 159 (230)
T ss_pred eccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 99999999999999999753211 10 00 0 1123445678999999999999999999999999999
Q ss_pred CCCCeeEEecCCchHHHHHHHHHHHHH-cCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCcee
Q 038045 175 PLLDLRVSVTGGVHFDLVKRVLRDIQR-VGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYD 243 (621)
Q Consensus 175 s~LDlkV~Vd~~~d~~LirRI~Rdl~e-rG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aD 243 (621)
+.||+. ....+.++.+.+.+ .|.|++.++|+++.+. ..+|++.++.+|.+...+...+
T Consensus 160 ~~LD~~-------~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~----~~~d~v~~l~~g~i~~~~~~~~ 218 (230)
T TIGR03410 160 EGIQPS-------IIKDIGRVIRRLRAEGGMAILLVEQYLDFAR----ELADRYYVMERGRVVASGAGDE 218 (230)
T ss_pred ccCCHH-------HHHHHHHHHHHHHHcCCcEEEEEeCCHHHHH----HhCCEEEEEECCEEEEECCHHH
Confidence 999973 23444555555544 4899999999999886 6778888888887765544433
No 59
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.89 E-value=9.9e-24 Score=208.32 Aligned_cols=187 Identities=15% Similarity=0.129 Sum_probs=147.3
Q ss_pred ecceeeeeCc--EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc------ccccccc
Q 038045 39 QDPLSFEKGF--FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND------SSRVVDG 109 (621)
Q Consensus 39 ~~~lsf~~G~--~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~------~~R~Ig~ 109 (621)
.+++++.++. ..+++++||++++|+ ++||+||||||||||+++|+|++ |..|.|.++|... ..+.++|
T Consensus 3 ~~~l~~~~~~~~~~il~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (220)
T cd03263 3 IRNLTKTYKKGTKPAVDDLSLNVYKGE---IFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGY 79 (220)
T ss_pred EEeeEEEeCCCCceeecceEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEE
Confidence 4567777765 789999999999999 99999999999999999999998 8999999998742 1346899
Q ss_pred cCCCCcccccchHHHHHHHHhc--CC--------------CccCc-cccccccCccCCceeecCCccEEEEecceecccc
Q 038045 110 NFDDPRLTDYDTLLENVRDLRE--GK--------------PVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEK 172 (621)
Q Consensus 110 vfQdp~l~d~~tV~enL~~L~~--gk--------------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDE 172 (621)
+||++.+++..++.+|+.+... +. ...++ ..+.....+|+|+++++..+++++.+|.++++||
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE 159 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDE 159 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 9999999989999999976421 10 01111 2234457889999999999999999999999999
Q ss_pred ccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccC
Q 038045 173 LRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQ 240 (621)
Q Consensus 173 p~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~ 240 (621)
|++.||+. ..+.+.++.+.+.+ +.|++.++|+.+... .++|++.++.+|.+...++
T Consensus 160 P~~~LD~~-------~~~~l~~~l~~~~~-~~tii~~sH~~~~~~----~~~d~i~~l~~g~i~~~~~ 215 (220)
T cd03263 160 PTSGLDPA-------SRRAIWDLILEVRK-GRSIILTTHSMDEAE----ALCDRIAIMSDGKLRCIGS 215 (220)
T ss_pred CCCCCCHH-------HHHHHHHHHHHHhc-CCEEEEEcCCHHHHH----HhcCEEEEEECCEEEecCC
Confidence 99999973 23444445555544 589999999998876 6677777888887665443
No 60
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.89 E-value=1.1e-23 Score=207.62 Aligned_cols=184 Identities=17% Similarity=0.206 Sum_probs=146.4
Q ss_pred ecceeeeeCcE----EEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc------ccccc
Q 038045 39 QDPLSFEKGFF----VVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND------SSRVV 107 (621)
Q Consensus 39 ~~~lsf~~G~~----~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~------~~R~I 107 (621)
.+++++.++.. .+++++||++++|+ +++|+|+||||||||+++|+|++ |..|.|.++|... ..+.+
T Consensus 4 ~~~v~~~~~~~~~~~~il~~~sl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i 80 (218)
T cd03266 4 ADALTKRFRDVKKTVQAVDGVSFTVKPGE---VTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRL 80 (218)
T ss_pred EEEEEEecCCCCccceeecceEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhE
Confidence 46788877765 79999999999999 99999999999999999999998 8999999998632 13468
Q ss_pred cccCCCCcccccchHHHHHHHHhc--CC--------------CccCc-cccccccCccCCceeecCCccEEEEecceecc
Q 038045 108 DGNFDDPRLTDYDTLLENVRDLRE--GK--------------PVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYALS 170 (621)
Q Consensus 108 g~vfQdp~l~d~~tV~enL~~L~~--gk--------------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLl 170 (621)
+|+||++.+++..++.+|+..... +. .+.+. ..+.....+|+|+++++..+++++.+|.++++
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illl 160 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLL 160 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999998999999975321 10 01111 12344567899999999999999999999999
Q ss_pred ccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCcee
Q 038045 171 EKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTE 236 (621)
Q Consensus 171 DEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie 236 (621)
|||++.||+. ..+.+.++.+.+.+.|.|++.++|+..... .++|++..+.+|.+.
T Consensus 161 DEPt~~LD~~-------~~~~l~~~l~~~~~~~~tii~~tH~~~~~~----~~~d~i~~l~~G~i~ 215 (218)
T cd03266 161 DEPTTGLDVM-------ATRALREFIRQLRALGKCILFSTHIMQEVE----RLCDRVVVLHRGRVV 215 (218)
T ss_pred cCCCcCCCHH-------HHHHHHHHHHHHHHCCCEEEEEeCCHHHHH----HhcCEEEEEECCEEe
Confidence 9999999973 234555555555566999999999998776 566777777776554
No 61
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.89 E-value=8.8e-24 Score=212.99 Aligned_cols=194 Identities=17% Similarity=0.128 Sum_probs=165.7
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc---cccccccCC
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS---SRVVDGNFD 112 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~---~R~Ig~vfQ 112 (621)
...++++..+|.+.|+++|||.+++|+ ++|++|+|||||||++|+|.|++ |+.|.|+++|.... ..+|||.|.
T Consensus 3 L~ie~vtK~Fg~k~av~~isf~v~~G~---i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPE 79 (300)
T COG4152 3 LEIEGVTKSFGDKKAVDNISFEVPPGE---IFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPE 79 (300)
T ss_pred eEEecchhccCceeeecceeeeecCCe---EEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChh
Confidence 456788889999999999999999999 99999999999999999999999 89999999997433 357999999
Q ss_pred CCcccccchHHHHHHHHhcCCCcc----------------Ccccc-ccccCccCCceeecCCccEEEEecceeccccccC
Q 038045 113 DPRLTDYDTLLENVRDLREGKPVQ----------------VPIYD-FESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRP 175 (621)
Q Consensus 113 dp~l~d~~tV~enL~~L~~gk~V~----------------~p~yd-~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s 175 (621)
+-.+|+.+|+.+.|.++..-+.++ +..+. .+..++|.|.+|.+..-..++.+|.++++|||++
T Consensus 80 ERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFS 159 (300)
T COG4152 80 ERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFS 159 (300)
T ss_pred hhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCcc
Confidence 999999999999999876432221 11121 2346788888998888889999999999999999
Q ss_pred CCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 176 LLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 176 ~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
.||+ +..++++....+++++|.|+++.+|+|+.+. ..||.+..+..|...-.+...++
T Consensus 160 GLDP-------VN~elLk~~I~~lk~~GatIifSsH~Me~vE----eLCD~llmL~kG~~V~~G~v~~i 217 (300)
T COG4152 160 GLDP-------VNVELLKDAIFELKEEGATIIFSSHRMEHVE----ELCDRLLMLKKGQTVLYGTVEDI 217 (300)
T ss_pred CCCh-------hhHHHHHHHHHHHHhcCCEEEEecchHHHHH----HHhhhhheecCCceEEeccHHHH
Confidence 9996 5678999999999999999999999999998 88999999998877666665554
No 62
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.89 E-value=1.5e-23 Score=205.98 Aligned_cols=184 Identities=18% Similarity=0.205 Sum_probs=145.0
Q ss_pred ecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-----ccccccccCC
Q 038045 39 QDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-----SSRVVDGNFD 112 (621)
Q Consensus 39 ~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-----~~R~Ig~vfQ 112 (621)
.+++++.++...+++++||++++|+ +++|+||||||||||+++|+|++ |..|.|.++|... ..+.++|++|
T Consensus 3 ~~~l~~~~~~~~~l~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q 79 (213)
T cd03301 3 LENVTKRFGNVTALDDLNLDIADGE---FVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQ 79 (213)
T ss_pred EEeeEEEECCeeeeeceEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEec
Confidence 4678888887889999999999999 99999999999999999999998 8999999998632 2246899999
Q ss_pred CCcccccchHHHHHHHHhc--CC--------------CccCc-cccccccCccCCceeecCCccEEEEecceeccccccC
Q 038045 113 DPRLTDYDTLLENVRDLRE--GK--------------PVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRP 175 (621)
Q Consensus 113 dp~l~d~~tV~enL~~L~~--gk--------------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s 175 (621)
++.+++..++.+|+..... +. ...+. ..+.....+|+|+++++..+++++.+|.++++|||++
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~ 159 (213)
T cd03301 80 NYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLS 159 (213)
T ss_pred ChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9998888999999976321 10 01111 1234457889999999999999999999999999999
Q ss_pred CCCeeEEecCCchHHHHHHHHHHHHH-cCCCceehHhHHHHHhccccccchhhhcCCCCcee
Q 038045 176 LLDLRVSVTGGVHFDLVKRVLRDIQR-VGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTE 236 (621)
Q Consensus 176 ~LDlkV~Vd~~~d~~LirRI~Rdl~e-rG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie 236 (621)
.||+. ..+.+..+.+.+.+ .|.|++.++|+..... ..+|++.++.+|.+.
T Consensus 160 ~LD~~-------~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~----~~~d~i~~l~~g~~~ 210 (213)
T cd03301 160 NLDAK-------LRVQMRAELKRLQQRLGTTTIYVTHDQVEAM----TMADRIAVMNDGQIQ 210 (213)
T ss_pred cCCHH-------HHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH----HhcCeEEEEECCEEE
Confidence 99973 23444444444443 5899999999998776 556666667666554
No 63
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.89 E-value=1.1e-23 Score=224.33 Aligned_cols=195 Identities=15% Similarity=0.155 Sum_probs=155.0
Q ss_pred ceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-----------cccccc
Q 038045 41 PLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-----------SSRVVD 108 (621)
Q Consensus 41 ~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-----------~~R~Ig 108 (621)
++++.+|.+.+ ++||++++|+ +++|+||||||||||+++|+|++ |+.|.|.++|... .++.++
T Consensus 4 ~l~~~~~~~~~--~isl~i~~Ge---i~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGDFSL--DADFTLPGQG---VTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECCEEE--EEEEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 56777777654 8999999999 99999999999999999999999 8999999998631 135689
Q ss_pred ccCCCCcccccchHHHHHHHHhcCC---C-----------ccC-ccccccccCccCCceeecCCccEEEEecceeccccc
Q 038045 109 GNFDDPRLTDYDTLLENVRDLREGK---P-----------VQV-PIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKL 173 (621)
Q Consensus 109 ~vfQdp~l~d~~tV~enL~~L~~gk---~-----------V~~-p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp 173 (621)
|+||++.+|+++++.+|+.+..... . +.+ ...+....++|+|++|++..+++++.+|.++++|||
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEP 158 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEP 158 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 9999999999999999998632210 0 111 123444678899999999999999999999999999
Q ss_pred cCCCCeeEEecCCchHHHHHHHHHHHH-HcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEEecCCCC
Q 038045 174 RPLLDLRVSVTGGVHFDLVKRVLRDIQ-RVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIYLLPPGE 251 (621)
Q Consensus 174 ~s~LDlkV~Vd~~~d~~LirRI~Rdl~-erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIYi~P~~~ 251 (621)
++.||+. ..+.+.++.+.+. +.|.|++.++|+++++. .++|++.++.+|.+...+...+++-.|...
T Consensus 159 ts~LD~~-------~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~----~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~ 226 (354)
T TIGR02142 159 LAALDDP-------RKYEILPYLERLHAEFGIPILYVSHSLQEVL----RLADRVVVLEDGRVAAAGPIAEVWASPDLP 226 (354)
T ss_pred CcCCCHH-------HHHHHHHHHHHHHHhcCCEEEEEecCHHHHH----HhCCEEEEEeCCEEEEECCHHHHhcCcCcc
Confidence 9999973 2234444444443 45899999999999887 778889999999998888887776555443
No 64
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=1.4e-23 Score=209.76 Aligned_cols=191 Identities=19% Similarity=0.188 Sum_probs=149.9
Q ss_pred ecceeeeeCc-EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc----------ccc
Q 038045 39 QDPLSFEKGF-FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS----------SRV 106 (621)
Q Consensus 39 ~~~lsf~~G~-~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~----------~R~ 106 (621)
.+++++.++. ..+++++||++.+|+ ++||+||||||||||+++|+|++ |..|.|.++|.... .+.
T Consensus 3 ~~~l~~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 3 VENLSKTYPNGKKALKDVSLSINPGE---FVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred EeeEEEecCCccEEEecceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence 4567777776 789999999999999 99999999999999999999999 89999999986321 245
Q ss_pred ccccCCCCcccccchHHHHHHHHhcC-------------C-----------CccCc-cccccccCccCCceeecCCccEE
Q 038045 107 VDGNFDDPRLTDYDTLLENVRDLREG-------------K-----------PVQVP-IYDFESSSRTGYRTVEVPSSRIV 161 (621)
Q Consensus 107 Ig~vfQdp~l~d~~tV~enL~~L~~g-------------k-----------~V~~p-~yd~~~~~rsggq~qrVa~ArVL 161 (621)
++|++|++.+|+..++.+|+...... . .+.+. ..+.....+|+|+++++..++++
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al 159 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARAL 159 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHH
Confidence 89999999999889999999752110 0 01111 12344568899999999999999
Q ss_pred EEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHH-HcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccC
Q 038045 162 IIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQ-RVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQ 240 (621)
Q Consensus 162 IvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~-erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~ 240 (621)
+.+|.++++|||++.||+. ..+.+.++.+.+. +.|.|++.++|+++... .++|++.++.+|.+...+.
T Consensus 160 ~~~p~llllDEPt~~LD~~-------~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~----~~~d~v~~l~~G~i~~~~~ 228 (241)
T cd03256 160 MQQPKLILADEPVASLDPA-------SSRQVMDLLKRINREEGITVIVSLHQVDLAR----EYADRIVGLKDGRIVFDGP 228 (241)
T ss_pred hcCCCEEEEeCccccCCHH-------HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH----HhCCEEEEEECCEEEeecC
Confidence 9999999999999999973 2344445555544 45899999999999886 6778888888887765544
Q ss_pred cee
Q 038045 241 TYD 243 (621)
Q Consensus 241 ~aD 243 (621)
..+
T Consensus 229 ~~~ 231 (241)
T cd03256 229 PAE 231 (241)
T ss_pred HHH
Confidence 443
No 65
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.89 E-value=1.3e-23 Score=210.48 Aligned_cols=191 Identities=19% Similarity=0.159 Sum_probs=149.7
Q ss_pred ecceeeeeC-cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc----------cccc
Q 038045 39 QDPLSFEKG-FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND----------SSRV 106 (621)
Q Consensus 39 ~~~lsf~~G-~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~----------~~R~ 106 (621)
.+++++.++ ...+++++||++.+|+ +++|+||||||||||+++|+|++ |..|.|.++|... .++.
T Consensus 4 ~~~l~~~~~~~~~il~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 4 VENLSKVYPNGKQALKNINLNINPGE---FVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred EEeeeeecCCCcceeecceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 567778776 6789999999999999 99999999999999999999999 8999999998632 1345
Q ss_pred ccccCCCCcccccchHHHHHHHHhcC-------------C-----------CccCc-cccccccCccCCceeecCCccEE
Q 038045 107 VDGNFDDPRLTDYDTLLENVRDLREG-------------K-----------PVQVP-IYDFESSSRTGYRTVEVPSSRIV 161 (621)
Q Consensus 107 Ig~vfQdp~l~d~~tV~enL~~L~~g-------------k-----------~V~~p-~yd~~~~~rsggq~qrVa~ArVL 161 (621)
++|+||++.+++..++.+|+...... . .+.+. ..+.....+|+|+++++..++++
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al 160 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARAL 160 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHH
Confidence 89999999999889999999642110 0 01111 12344567899999999999999
Q ss_pred EEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHH-HcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccC
Q 038045 162 IIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQ-RVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQ 240 (621)
Q Consensus 162 IvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~-erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~ 240 (621)
+.+|.++++|||++.||+. ..+.+.++.+.+. +.|.|++.++|+.+... ..+|++.++.+|.+...+.
T Consensus 161 ~~~p~llllDEPt~~LD~~-------~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~----~~~d~v~~l~~G~i~~~~~ 229 (243)
T TIGR02315 161 AQQPDLILADEPIASLDPK-------TSKQVMDYLKRINKEDGITVIINLHQVDLAK----KYADRIVGLKAGEIVFDGA 229 (243)
T ss_pred hcCCCEEEEeCCcccCCHH-------HHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH----HhcCeEEEEECCEEEecCC
Confidence 9999999999999999973 2344445555543 45899999999998876 6677888888887765555
Q ss_pred cee
Q 038045 241 TYD 243 (621)
Q Consensus 241 ~aD 243 (621)
..+
T Consensus 230 ~~~ 232 (243)
T TIGR02315 230 PSE 232 (243)
T ss_pred HHH
Confidence 444
No 66
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.89 E-value=1.7e-23 Score=205.85 Aligned_cols=181 Identities=22% Similarity=0.238 Sum_probs=143.3
Q ss_pred ecceeeee-CcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc----------cccc
Q 038045 39 QDPLSFEK-GFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND----------SSRV 106 (621)
Q Consensus 39 ~~~lsf~~-G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~----------~~R~ 106 (621)
.+++++.+ +...+++++||++++|+ ++||+||||||||||+++|+|++ |..|.|.++|... ..+.
T Consensus 4 ~~~l~~~~~~~~~il~~is~~i~~G~---~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 4 FHNVSKAYPGGVAALHDVSLHIRKGE---FLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred EEeeeEEeCCCceeecceeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 56777777 45689999999999999 99999999999999999999998 8999999998632 1246
Q ss_pred ccccCCCCcccccchHHHHHHHHhc--C--------------CCccCc-cccccccCccCCceeecCCccEEEEecceec
Q 038045 107 VDGNFDDPRLTDYDTLLENVRDLRE--G--------------KPVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYAL 169 (621)
Q Consensus 107 Ig~vfQdp~l~d~~tV~enL~~L~~--g--------------k~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLL 169 (621)
++|++|++.+++..++.+|+..... + +.+.+. ..+.....+|+|+++++..+++++.+|.+++
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll 160 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLL 160 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEE
Confidence 8999999999988999999876321 1 001111 1234457889999999999999999999999
Q ss_pred cccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCC
Q 038045 170 SEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEG 233 (621)
Q Consensus 170 lDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg 233 (621)
+|||++.||+. ....+.++.+.+.+.|.|++.++|+.++.. .++|++.++..|
T Consensus 161 LDEPt~~LD~~-------~~~~l~~~l~~~~~~~~tii~~tH~~~~~~----~~~d~i~~l~~G 213 (214)
T TIGR02673 161 ADEPTGNLDPD-------LSERILDLLKRLNKRGTTVIVATHDLSLVD----RVAHRVIILDDG 213 (214)
T ss_pred EeCCcccCCHH-------HHHHHHHHHHHHHHcCCEEEEEeCCHHHHH----HhcCEEEEecCC
Confidence 99999999973 234555555556566899999999998876 566666666554
No 67
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.89 E-value=8.7e-24 Score=227.67 Aligned_cols=196 Identities=19% Similarity=0.179 Sum_probs=157.1
Q ss_pred eeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcc---c------------ccc
Q 038045 42 LSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYN---D------------SSR 105 (621)
Q Consensus 42 lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~---~------------~~R 105 (621)
+...+|...+|+++||++++|+ +++|+|+||||||||+++|+|++ |+.|.|.+||.. . ..+
T Consensus 30 ~~~~~g~~~~l~~vsf~i~~Ge---i~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~ 106 (382)
T TIGR03415 30 ILDETGLVVGVANASLDIEEGE---ICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTH 106 (382)
T ss_pred HHHhhCCEEEEEeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcC
Confidence 3355788889999999999999 99999999999999999999999 899999999841 1 014
Q ss_pred cccccCCCCcccccchHHHHHHHHhc--C--------------CCccC-ccccccccCccCCceeecCCccEEEEeccee
Q 038045 106 VVDGNFDDPRLTDYDTLLENVRDLRE--G--------------KPVQV-PIYDFESSSRTGYRTVEVPSSRIVIIEGIYA 168 (621)
Q Consensus 106 ~Ig~vfQdp~l~d~~tV~enL~~L~~--g--------------k~V~~-p~yd~~~~~rsggq~qrVa~ArVLIvEG~lL 168 (621)
.++|+||++.+|++.|+.+|+.+... + +.+.+ ...+....++|+|++|++.++++++.+|.++
T Consensus 107 ~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~IL 186 (382)
T TIGR03415 107 RVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADIL 186 (382)
T ss_pred CEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 69999999999999999999986431 1 01111 1234456789999999999999999999999
Q ss_pred ccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEEecC
Q 038045 169 LSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIYLLP 248 (621)
Q Consensus 169 LlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIYi~P 248 (621)
++|||++.||+.. ...+...+.+...+.|.|++.++|+++++. .++|++.+|.+|.+.+.+++.+++-.|
T Consensus 187 LlDEPts~LD~~~------r~~l~~~L~~l~~~~~~TII~iTHdl~e~~----~l~DrI~vl~~G~iv~~g~~~ei~~~p 256 (382)
T TIGR03415 187 LMDEPFSALDPLI------RTQLQDELLELQAKLNKTIIFVSHDLDEAL----KIGNRIAIMEGGRIIQHGTPEEIVLNP 256 (382)
T ss_pred EEECCCccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHH----HhCCEEEEEECCEEEEecCHHHHhhCc
Confidence 9999999999742 223333344444445999999999999987 788999999999999888888875444
Q ss_pred CC
Q 038045 249 PG 250 (621)
Q Consensus 249 ~~ 250 (621)
.+
T Consensus 257 ~~ 258 (382)
T TIGR03415 257 AN 258 (382)
T ss_pred ch
Confidence 43
No 68
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=3.4e-23 Score=207.68 Aligned_cols=194 Identities=16% Similarity=0.164 Sum_probs=154.5
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc--------ccccc
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND--------SSRVV 107 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~--------~~R~I 107 (621)
...+++++.++...+++++||++++|+ ++||+||||||||||+++|+|++ |..|.|.++|... .++.+
T Consensus 4 l~~~~l~~~~~~~~~l~~~sl~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (241)
T PRK10895 4 LTAKNLAKAYKGRRVVEDVSLTVNSGE---IVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80 (241)
T ss_pred EEEeCcEEEeCCEEEEeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCe
Confidence 345678888888889999999999999 99999999999999999999998 8999999998632 12468
Q ss_pred cccCCCCcccccchHHHHHHHHhcC-CC----------------ccCc-cccccccCccCCceeecCCccEEEEecceec
Q 038045 108 DGNFDDPRLTDYDTLLENVRDLREG-KP----------------VQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYAL 169 (621)
Q Consensus 108 g~vfQdp~l~d~~tV~enL~~L~~g-k~----------------V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLL 169 (621)
+|+||++.+++..++.+|+...... .. +.+. ..+.....+|+|+++++..+++++.+|.+++
T Consensus 81 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 160 (241)
T PRK10895 81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFIL 160 (241)
T ss_pred EEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999989999999763210 00 0111 1233456789999999999999999999999
Q ss_pred cccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 170 SEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 170 lDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
+|||++.||+. ..+.+.++.+.+.+.|.|++.++|+++... ..+|++.++.+|.+...+++.++
T Consensus 161 lDEPt~~LD~~-------~~~~l~~~l~~~~~~g~tiii~sH~~~~~~----~~~d~v~~l~~G~i~~~~~~~~~ 224 (241)
T PRK10895 161 LDEPFAGVDPI-------SVIDIKRIIEHLRDSGLGVLITDHNVRETL----AVCERAYIVSQGHLIAHGTPTEI 224 (241)
T ss_pred EcCCcccCCHH-------HHHHHHHHHHHHHhcCCEEEEEEcCHHHHH----HhcCEEEEEeCCeEEeeCCHHHH
Confidence 99999999973 234445555666667999999999998776 67788888888887766555554
No 69
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.88 E-value=1.8e-23 Score=205.30 Aligned_cols=181 Identities=17% Similarity=0.154 Sum_probs=142.1
Q ss_pred ecceeeeeCc-EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc----------cccc
Q 038045 39 QDPLSFEKGF-FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND----------SSRV 106 (621)
Q Consensus 39 ~~~lsf~~G~-~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~----------~~R~ 106 (621)
.+++++.++. ..+++++||++++|+ ++||+||||||||||+++|+|++ |..|.|.++|... .++.
T Consensus 3 ~~~l~~~~~~~~~~l~~~sl~i~~G~---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 3 FINVTKTYPNGTAALDGINISISAGE---FVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred EEEEEEEeCCCceeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 4567777753 679999999999999 99999999999999999999998 8999999998632 1246
Q ss_pred ccccCCCCcccccchHHHHHHHHhc--CC--------------CccCc-cccccccCccCCceeecCCccEEEEecceec
Q 038045 107 VDGNFDDPRLTDYDTLLENVRDLRE--GK--------------PVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYAL 169 (621)
Q Consensus 107 Ig~vfQdp~l~d~~tV~enL~~L~~--gk--------------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLL 169 (621)
++|++|++.+++..++.+|+..... +. .+.+. ..+.....+|+|+++++..+++++.+|.+++
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 159 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILI 159 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEE
Confidence 8999999999999999999976421 10 01111 1234457889999999999999999999999
Q ss_pred cccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCC
Q 038045 170 SEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEG 233 (621)
Q Consensus 170 lDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg 233 (621)
+|||++.||+. ..+.+.++.+.+.+.|.|++.++|+..... .++|++.++.+|
T Consensus 160 lDEPt~~LD~~-------~~~~~~~~l~~~~~~~~tiiivtH~~~~~~----~~~d~i~~l~~G 212 (214)
T cd03292 160 ADEPTGNLDPD-------TTWEIMNLLKKINKAGTTVVVATHAKELVD----TTRHRVIALERG 212 (214)
T ss_pred EeCCCCcCCHH-------HHHHHHHHHHHHHHcCCEEEEEeCCHHHHH----HhCCEEEEEeCC
Confidence 99999999973 234555555555566899999999988775 455666666554
No 70
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.88 E-value=1.9e-23 Score=220.84 Aligned_cols=202 Identities=14% Similarity=0.193 Sum_probs=157.2
Q ss_pred eeecceeeee----CcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CC---eeEEEECCcccc-----
Q 038045 37 PIQDPLSFEK----GFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PS---IAVISMDNYNDS----- 103 (621)
Q Consensus 37 ~v~~~lsf~~----G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~---sGvI~lDg~~~~----- 103 (621)
...+++++.+ |...+|+++||++.+|+ ++||+|+||||||||+++|+|++ |+ +|.|.++|....
T Consensus 13 L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge---~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~ 89 (330)
T PRK09473 13 LDVKDLRVTFSTPDGDVTAVNDLNFSLRAGE---TLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEK 89 (330)
T ss_pred EEEeCeEEEEecCCCCEEEEeeeEEEEcCCC---EEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHH
Confidence 3466666655 45789999999999999 99999999999999999999999 65 899999997321
Q ss_pred ------cccccccCCCC--cccccchHHHHHHHHh---cC--------------CCccCc----cccccccCccCCceee
Q 038045 104 ------SRVVDGNFDDP--RLTDYDTLLENVRDLR---EG--------------KPVQVP----IYDFESSSRTGYRTVE 154 (621)
Q Consensus 104 ------~R~Ig~vfQdp--~l~d~~tV~enL~~L~---~g--------------k~V~~p----~yd~~~~~rsggq~qr 154 (621)
.+.++|+||++ .+++.+++.+++.... .+ +.+.++ ..+..++++|||++|+
T Consensus 90 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QR 169 (330)
T PRK09473 90 ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQR 169 (330)
T ss_pred HHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHH
Confidence 13699999998 5778888888775421 11 012222 1244578899999999
Q ss_pred cCCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCc
Q 038045 155 VPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGH 234 (621)
Q Consensus 155 Va~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~ 234 (621)
+.++++++.+|.++++|||++.||... ...++..+.+..++.|.|++.|+|++..+. .++|++++|+.|.
T Consensus 170 v~IArAL~~~P~llilDEPts~LD~~~------~~~i~~lL~~l~~~~g~til~iTHdl~~~~----~~~Dri~vm~~G~ 239 (330)
T PRK09473 170 VMIAMALLCRPKLLIADEPTTALDVTV------QAQIMTLLNELKREFNTAIIMITHDLGVVA----GICDKVLVMYAGR 239 (330)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHHHHcCCEEEEEECCHHHHH----HhCCEEEEEECCE
Confidence 999999999999999999999999742 223333333333445999999999999887 7889999999999
Q ss_pred eeeccCceeEEecCCCC
Q 038045 235 TETMEQTYDIYLLPPGE 251 (621)
Q Consensus 235 Ie~~~~~aDIYi~P~~~ 251 (621)
+...+...+++-.|...
T Consensus 240 ive~g~~~~i~~~p~~p 256 (330)
T PRK09473 240 TMEYGNARDVFYQPSHP 256 (330)
T ss_pred EEEECCHHHHHhCCCCH
Confidence 99888888886555443
No 71
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=2e-23 Score=216.02 Aligned_cols=193 Identities=14% Similarity=0.178 Sum_probs=152.5
Q ss_pred eecceeeeeCc-----EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc--------
Q 038045 38 IQDPLSFEKGF-----FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS-------- 103 (621)
Q Consensus 38 v~~~lsf~~G~-----~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~-------- 103 (621)
..+++++.|+. ..+|++|||++.+|+ ++||+||||||||||+++|+|++ |..|.|.++|....
T Consensus 4 ~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 80 (287)
T PRK13637 4 KIENLTHIYMEGTPFEKKALDNVNIEIEDGE---FVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSD 80 (287)
T ss_pred EEEEEEEECCCCCccccceeeeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHH
Confidence 35677777753 479999999999999 99999999999999999999999 89999999997421
Q ss_pred -cccccccCCCCc-ccccchHHHHHHHHhc--C--------------CCccCc---cccccccCccCCceeecCCccEEE
Q 038045 104 -SRVVDGNFDDPR-LTDYDTLLENVRDLRE--G--------------KPVQVP---IYDFESSSRTGYRTVEVPSSRIVI 162 (621)
Q Consensus 104 -~R~Ig~vfQdp~-l~d~~tV~enL~~L~~--g--------------k~V~~p---~yd~~~~~rsggq~qrVa~ArVLI 162 (621)
.+.++|+||+|. .+...++.+|+.+... + +.+.+. ..+.....+|+|++|++.++++++
T Consensus 81 ~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~ 160 (287)
T PRK13637 81 IRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVA 160 (287)
T ss_pred HhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHH
Confidence 246899999985 2335799999975321 1 012232 245556889999999999999999
Q ss_pred EecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHH-cCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCc
Q 038045 163 IEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQR-VGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQT 241 (621)
Q Consensus 163 vEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~e-rG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~ 241 (621)
.+|.++++|||+..||+. ..+.+..+.+.+.+ .|.|++.++|++.++. .++|++.++.+|.+...+..
T Consensus 161 ~~P~llllDEPt~gLD~~-------~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~----~~~drv~~l~~G~i~~~g~~ 229 (287)
T PRK13637 161 MEPKILILDEPTAGLDPK-------GRDEILNKIKELHKEYNMTIILVSHSMEDVA----KLADRIIVMNKGKCELQGTP 229 (287)
T ss_pred cCCCEEEEECCccCCCHH-------HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH----HhCCEEEEEECCEEEEECCH
Confidence 999999999999999973 23455555555544 4999999999999887 77889999999988776666
Q ss_pred eeE
Q 038045 242 YDI 244 (621)
Q Consensus 242 aDI 244 (621)
.++
T Consensus 230 ~~~ 232 (287)
T PRK13637 230 REV 232 (287)
T ss_pred HHH
Confidence 555
No 72
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.6e-23 Score=221.10 Aligned_cols=200 Identities=17% Similarity=0.226 Sum_probs=154.8
Q ss_pred eecceeeeeCc----EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-C----CeeEEEECCcccc-----
Q 038045 38 IQDPLSFEKGF----FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-P----SIAVISMDNYNDS----- 103 (621)
Q Consensus 38 v~~~lsf~~G~----~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P----~sGvI~lDg~~~~----- 103 (621)
-.+++++.++. ..+|++|||++++|+ ++||+|+||||||||+++|+|++ | ..|.|.++|....
T Consensus 5 ~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge---~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~ 81 (326)
T PRK11022 5 NVDKLSVHFGDESAPFRAVDRISYSVKQGE---VVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEK 81 (326)
T ss_pred EEeCeEEEECCCCccEEEEeeeEEEECCCC---EEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHH
Confidence 45677776654 579999999999999 99999999999999999999998 3 6899999996321
Q ss_pred ------cccccccCCCCc--ccccchHHHHHHHHhc---C--------------CCccCc----cccccccCccCCceee
Q 038045 104 ------SRVVDGNFDDPR--LTDYDTLLENVRDLRE---G--------------KPVQVP----IYDFESSSRTGYRTVE 154 (621)
Q Consensus 104 ------~R~Ig~vfQdp~--l~d~~tV~enL~~L~~---g--------------k~V~~p----~yd~~~~~rsggq~qr 154 (621)
.+.++|+||++. +++.+++.+++..... + +.+.++ ..+..++++|||++|+
T Consensus 82 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QR 161 (326)
T PRK11022 82 ERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQR 161 (326)
T ss_pred HHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHH
Confidence 135899999984 6777888776654210 1 112222 2345678899999999
Q ss_pred cCCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCc
Q 038045 155 VPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGH 234 (621)
Q Consensus 155 Va~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~ 234 (621)
+.++++++.+|.++++|||++.||... ...++..+.+..++.|.|++.|+|++..+. .++|++++|+.|.
T Consensus 162 v~iArAL~~~P~llilDEPts~LD~~~------~~~il~lL~~l~~~~g~til~iTHdl~~~~----~~adri~vm~~G~ 231 (326)
T PRK11022 162 VMIAMAIACRPKLLIADEPTTALDVTI------QAQIIELLLELQQKENMALVLITHDLALVA----EAAHKIIVMYAGQ 231 (326)
T ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHH----HhCCEEEEEECCE
Confidence 999999999999999999999999742 122333343333456999999999999887 7889999999999
Q ss_pred eeeccCceeEEecCCC
Q 038045 235 TETMEQTYDIYLLPPG 250 (621)
Q Consensus 235 Ie~~~~~aDIYi~P~~ 250 (621)
+...+...+++-.|..
T Consensus 232 ive~g~~~~~~~~p~h 247 (326)
T PRK11022 232 VVETGKAHDIFRAPRH 247 (326)
T ss_pred EEEECCHHHHhhCCCC
Confidence 9888887777544443
No 73
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.88 E-value=2.7e-23 Score=210.73 Aligned_cols=194 Identities=20% Similarity=0.187 Sum_probs=156.2
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc------------
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS------------ 103 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~------------ 103 (621)
...+++++.++...++++++|++++|+ ++||+|+||||||||+++|+|++ |..|.|.++|....
T Consensus 6 l~~~~l~~~~~~~~~l~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 82 (257)
T PRK10619 6 LNVIDLHKRYGEHEVLKGVSLQANAGD---VISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVA 82 (257)
T ss_pred EEEeeeEEEECCEEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccc
Confidence 457788888888899999999999999 99999999999999999999998 89999999986321
Q ss_pred --------cccccccCCCCcccccchHHHHHHHHh---cC--------------CCccCccc--cccccCccCCceeecC
Q 038045 104 --------SRVVDGNFDDPRLTDYDTLLENVRDLR---EG--------------KPVQVPIY--DFESSSRTGYRTVEVP 156 (621)
Q Consensus 104 --------~R~Ig~vfQdp~l~d~~tV~enL~~L~---~g--------------k~V~~p~y--d~~~~~rsggq~qrVa 156 (621)
.+.++|++|++.+++..++.+|+.+.. .. +.+.+..+ +.....+|+|+++++.
T Consensus 83 ~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~ 162 (257)
T PRK10619 83 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVS 162 (257)
T ss_pred cchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHH
Confidence 246899999999999999999986421 01 01122221 3445788999999999
Q ss_pred CccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCcee
Q 038045 157 SSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTE 236 (621)
Q Consensus 157 ~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie 236 (621)
.+++++.+|.++++|||+..||+. ..+.+.++.+.+.+.|.|++.++|+..... .++|++.++.+|.+.
T Consensus 163 laral~~~p~llllDEPt~~LD~~-------~~~~l~~~l~~l~~~g~tiiivsH~~~~~~----~~~d~i~~l~~G~i~ 231 (257)
T PRK10619 163 IARALAMEPEVLLFDEPTSALDPE-------LVGEVLRIMQQLAEEGKTMVVVTHEMGFAR----HVSSHVIFLHQGKIE 231 (257)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHH-------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHH----HhcCEEEEEECCEEE
Confidence 999999999999999999999973 334555555555566999999999998876 678888889988887
Q ss_pred eccCceeE
Q 038045 237 TMEQTYDI 244 (621)
Q Consensus 237 ~~~~~aDI 244 (621)
..++..++
T Consensus 232 ~~~~~~~~ 239 (257)
T PRK10619 232 EEGAPEQL 239 (257)
T ss_pred EeCCHHHh
Confidence 66666555
No 74
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.8e-23 Score=220.77 Aligned_cols=189 Identities=13% Similarity=0.165 Sum_probs=150.6
Q ss_pred EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc----------ccccccccCCCC--c
Q 038045 49 FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND----------SSRVVDGNFDDP--R 115 (621)
Q Consensus 49 ~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~----------~~R~Ig~vfQdp--~ 115 (621)
..+|++|||++.+|+ ++||+|+||||||||+++|+|++ |..|.|.++|... .++.++|+||+| .
T Consensus 28 ~~~l~~vsl~i~~Ge---~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~ 104 (327)
T PRK11308 28 VKALDGVSFTLERGK---TLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGS 104 (327)
T ss_pred eeEEeeeEEEECCCC---EEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhh
Confidence 579999999999999 99999999999999999999999 8899999999632 134699999998 4
Q ss_pred ccccchHHHHHHHHh-c--C--------------CCccCc--cccccccCccCCceeecCCccEEEEecceeccccccCC
Q 038045 116 LTDYDTLLENVRDLR-E--G--------------KPVQVP--IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPL 176 (621)
Q Consensus 116 l~d~~tV~enL~~L~-~--g--------------k~V~~p--~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~ 176 (621)
+++.+++.+++.... . + +.+.++ .++..++++|||++|++.++++++.+|.++++|||++.
T Consensus 105 l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~ 184 (327)
T PRK11308 105 LNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSA 184 (327)
T ss_pred cCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCcc
Confidence 778888888876421 1 0 112222 35666789999999999999999999999999999999
Q ss_pred CCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEEecCCC
Q 038045 177 LDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIYLLPPG 250 (621)
Q Consensus 177 LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIYi~P~~ 250 (621)
||... ...++..+.+...+.|.|++.|+|++..+. .++|++++|+.|.+...++..+++-.|..
T Consensus 185 LD~~~------~~~i~~lL~~l~~~~g~til~iTHdl~~~~----~~adrv~vm~~G~ive~g~~~~~~~~p~h 248 (327)
T PRK11308 185 LDVSV------QAQVLNLMMDLQQELGLSYVFISHDLSVVE----HIADEVMVMYLGRCVEKGTKEQIFNNPRH 248 (327)
T ss_pred CCHHH------HHHHHHHHHHHHHHcCCEEEEEeCCHHHHH----HhCCEEEEEECCEEEEECCHHHHhcCCCC
Confidence 99732 122333333333456999999999999887 78899999999999888877777544433
No 75
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=3.2e-23 Score=198.74 Aligned_cols=162 Identities=20% Similarity=0.248 Sum_probs=135.5
Q ss_pred ecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc------ccccccccC
Q 038045 39 QDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND------SSRVVDGNF 111 (621)
Q Consensus 39 ~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~------~~R~Ig~vf 111 (621)
.+++++.++...+++++||++.+|+ +++|+||||||||||+++|+|++ |..|.|.++|... .++.++|+|
T Consensus 3 ~~~l~~~~~~~~~l~~~~~~i~~Ge---~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (173)
T cd03230 3 VRNLSKRYGKKTALDDISLTVEKGE---IYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLP 79 (173)
T ss_pred EEEEEEEECCeeeeeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEe
Confidence 4567777766679999999999999 99999999999999999999998 8999999998632 134689999
Q ss_pred CCCcccccchHHHHHHHHhcCCCccCccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchHHH
Q 038045 112 DDPRLTDYDTLLENVRDLREGKPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDL 191 (621)
Q Consensus 112 Qdp~l~d~~tV~enL~~L~~gk~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~L 191 (621)
|++.+++..++.+|+. +|+|+++++..+++++.+|.++++|||+..||.. ..+.
T Consensus 80 q~~~~~~~~tv~~~~~-------------------LS~G~~qrv~laral~~~p~illlDEPt~~LD~~-------~~~~ 133 (173)
T cd03230 80 EEPSLYENLTVRENLK-------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPE-------SRRE 133 (173)
T ss_pred cCCccccCCcHHHHhh-------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHH-------HHHH
Confidence 9999998899999985 7899999999999999999999999999999973 2345
Q ss_pred HHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCC
Q 038045 192 VKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEG 233 (621)
Q Consensus 192 irRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg 233 (621)
+.++.+.+.+.|.|++.++|+..... .++|++.++++|
T Consensus 134 l~~~l~~~~~~g~tiii~th~~~~~~----~~~d~i~~l~~g 171 (173)
T cd03230 134 FWELLRELKKEGKTILLSSHILEEAE----RLCDRVAILNNG 171 (173)
T ss_pred HHHHHHHHHHCCCEEEEECCCHHHHH----HhCCEEEEEeCC
Confidence 55555555556899999999988775 556666666554
No 76
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.88 E-value=3.8e-24 Score=210.39 Aligned_cols=195 Identities=16% Similarity=0.174 Sum_probs=167.3
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc--------ccccc
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND--------SSRVV 107 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~--------~~R~I 107 (621)
...+++...|+.+.+++++||.+.+|| +||+.|||||||||.+-++.|+. |++|.|.+||.+. .+..+
T Consensus 5 L~a~~l~K~y~kr~Vv~~Vsl~v~~GE---iVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGi 81 (243)
T COG1137 5 LVAENLAKSYKKRKVVNDVSLEVNSGE---IVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGI 81 (243)
T ss_pred EEehhhhHhhCCeeeeeeeeEEEcCCc---EEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCc
Confidence 467788888999999999999999999 99999999999999999999999 9999999999742 23468
Q ss_pred cccCCCCcccccchHHHHHHHHhcCCCcc------------------Cc-cccccccCccCCceeecCCccEEEEeccee
Q 038045 108 DGNFDDPRLTDYDTLLENVRDLREGKPVQ------------------VP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYA 168 (621)
Q Consensus 108 g~vfQdp~l~d~~tV~enL~~L~~gk~V~------------------~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lL 168 (621)
||.+|++..|..+||.+||....+..... +. ..+.....+|||++.++.+||++..+|.++
T Consensus 82 gYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fi 161 (243)
T COG1137 82 GYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFI 161 (243)
T ss_pred ccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEE
Confidence 99999999999999999998755321110 00 112224578999999999999999999999
Q ss_pred ccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEE
Q 038045 169 LSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIY 245 (621)
Q Consensus 169 LlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIY 245 (621)
|+|||+...||.. +.-++++.+.++.+|.-+...-|...+.. .++|+..++++|.+...+++.+++
T Consensus 162 LLDEPFAGVDPia-------V~dIq~iI~~L~~rgiGvLITDHNVREtL----~i~dRaYIi~~G~vla~G~p~ei~ 227 (243)
T COG1137 162 LLDEPFAGVDPIA-------VIDIQRIIKHLKDRGIGVLITDHNVRETL----DICDRAYIISDGKVLAEGSPEEIV 227 (243)
T ss_pred EecCCccCCCchh-------HHHHHHHHHHHHhCCceEEEccccHHHHH----hhhheEEEEecCeEEecCCHHHHh
Confidence 9999999999853 46778888999999999999999999988 889999999999999999999885
No 77
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.88 E-value=2.8e-23 Score=212.67 Aligned_cols=194 Identities=15% Similarity=0.160 Sum_probs=154.1
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc----------ccc
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND----------SSR 105 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~----------~~R 105 (621)
...+++++.++...+++++||++++|+ +++|+||||||||||+++|+|++ |..|.|.++|... ..+
T Consensus 8 l~~~~l~~~~~~~~il~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 8 VDMRGVSFTRGNRCIFDNISLTVPRGK---ITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred EEEeCeEEEECCEEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 456788888888889999999999999 99999999999999999999999 8999999998632 124
Q ss_pred cccccCCCCcccccchHHHHHHHHhc---C--C------------CccCc-cccccccCccCCceeecCCccEEEEecce
Q 038045 106 VVDGNFDDPRLTDYDTLLENVRDLRE---G--K------------PVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIY 167 (621)
Q Consensus 106 ~Ig~vfQdp~l~d~~tV~enL~~L~~---g--k------------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~l 167 (621)
.++|+||++.+++..++.+|+..... . . .+.+. ..+.....+|+|+++++..+++++.+|.+
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~l 164 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDL 164 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 58999999999998999999975321 0 0 01111 13344578899999999999999999999
Q ss_pred eccccccCCCCeeEEecCCchHHHHHHHHHHHH-HcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 168 ALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQ-RVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 168 LLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~-erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
+++|||++.||+. ..+.+.++.+.+. +.|.|++.++|+.+... ..+|++.++.+|.+...+...++
T Consensus 165 llLDEPt~~LD~~-------~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~----~~~d~v~~l~~G~i~~~g~~~~~ 231 (269)
T PRK11831 165 IMFDEPFVGQDPI-------TMGVLVKLISELNSALGVTCVVVSHDVPEVL----SIADHAYIVADKKIVAHGSAQAL 231 (269)
T ss_pred EEEcCCCccCCHH-------HHHHHHHHHHHHHHhcCcEEEEEecCHHHHH----HhhCEEEEEECCEEEEeCCHHHH
Confidence 9999999999973 2344444444443 44899999999998876 66777888888888766666555
No 78
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=2.3e-23 Score=209.28 Aligned_cols=191 Identities=18% Similarity=0.176 Sum_probs=150.7
Q ss_pred ecceeeeeCc-EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc-------cccccc
Q 038045 39 QDPLSFEKGF-FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS-------SRVVDG 109 (621)
Q Consensus 39 ~~~lsf~~G~-~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~-------~R~Ig~ 109 (621)
.+++++.++. ..+++++||++++|+ ++||+||||||||||+++|+|++ |..|.|.++|.... .+.++|
T Consensus 3 ~~~l~~~~~~~~~~l~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 3 FENVTKRYGGGKKAVNNLNLEIAKGE---FLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred EEEEEEEeCCcceEeeeeEEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence 4567787776 789999999999999 99999999999999999999999 89999999986321 246899
Q ss_pred cCCCCcccccchHHHHHHHHhc--C--------------CCccCc---cccccccCccCCceeecCCccEEEEecceecc
Q 038045 110 NFDDPRLTDYDTLLENVRDLRE--G--------------KPVQVP---IYDFESSSRTGYRTVEVPSSRIVIIEGIYALS 170 (621)
Q Consensus 110 vfQdp~l~d~~tV~enL~~L~~--g--------------k~V~~p---~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLl 170 (621)
+||++.+++..++.+|+.+... + ..+.+. ..+.....+|+|+++++..+++++.+|.++++
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 159 (242)
T cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLM 159 (242)
T ss_pred EccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 9999999999999999975321 1 011222 22444578899999999999999999999999
Q ss_pred ccccCCCCeeEEecCCchHHHHHHHHHHHHH-cCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCcee
Q 038045 171 EKLRPLLDLRVSVTGGVHFDLVKRVLRDIQR-VGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYD 243 (621)
Q Consensus 171 DEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~e-rG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aD 243 (621)
|||++.||+. ..+.+.++.+.+.+ .|.+++.++|+..... .++|++.++.+|.+...+...+
T Consensus 160 DEPt~~LD~~-------~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~----~~~d~i~~l~~G~i~~~~~~~~ 222 (242)
T cd03295 160 DEPFGALDPI-------TRDQLQEEFKRLQQELGKTIVFVTHDIDEAF----RLADRIAIMKNGEIVQVGTPDE 222 (242)
T ss_pred cCCcccCCHH-------HHHHHHHHHHHHHHHcCCEEEEEecCHHHHH----HhCCEEEEEECCEEEEecCHHH
Confidence 9999999972 23444444444444 5899999999998776 6778888888888765544443
No 79
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=1.5e-23 Score=214.85 Aligned_cols=193 Identities=18% Similarity=0.172 Sum_probs=154.1
Q ss_pred eecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc-----------cc
Q 038045 38 IQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS-----------SR 105 (621)
Q Consensus 38 v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~-----------~R 105 (621)
...++++.+|...+++++||++++|+ +++|+||||||||||+++|+|++ |..|.|.++|.... .+
T Consensus 26 ~~~~~~~~~~~~~il~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTGQTVGVNDVSLDVREGE---IFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcCCceEeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 45577788888999999999999999 99999999999999999999999 89999999986321 24
Q ss_pred cccccCCCCcccccchHHHHHHHHhc--C--C------------CccCc-cccccccCccCCceeecCCccEEEEeccee
Q 038045 106 VVDGNFDDPRLTDYDTLLENVRDLRE--G--K------------PVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYA 168 (621)
Q Consensus 106 ~Ig~vfQdp~l~d~~tV~enL~~L~~--g--k------------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lL 168 (621)
.++|++|++.+++..++.+|+..... + . .+.+. ..+.....+|+|+++++..+++++.+|.++
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~il 182 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDIL 182 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 68999999999988999999976321 1 0 11111 234456788999999999999999999999
Q ss_pred ccccccCCCCeeEEecCCchHHHHHHHHHHHH-HcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 169 LSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQ-RVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 169 LlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~-erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
++|||++.||+. ..+.+..+.+.+. +.|.|++.++|+++... .++|++.++.+|.+...+...++
T Consensus 183 lLDEPt~~LD~~-------~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~----~~~d~v~~l~~G~i~~~g~~~~~ 248 (269)
T cd03294 183 LMDEAFSALDPL-------IRREMQDELLRLQAELQKTIVFITHDLDEAL----RLGDRIAIMKDGRLVQVGTPEEI 248 (269)
T ss_pred EEcCCCccCCHH-------HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH----HhcCEEEEEECCEEEEeCCHHHH
Confidence 999999999973 2344555555544 44899999999998876 67788888888887766655555
No 80
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.88 E-value=3.4e-23 Score=224.49 Aligned_cols=194 Identities=21% Similarity=0.204 Sum_probs=160.1
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc-------ccccc
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS-------SRVVD 108 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~-------~R~Ig 108 (621)
...+++++.|+.+.+|+++||.+++|+ ++||+||||||||||+++|+|++ |..|.|.++|.... .+.++
T Consensus 4 L~~~nls~~y~~~~vL~~vs~~i~~Ge---iv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig 80 (402)
T PRK09536 4 IDVSDLSVEFGDTTVLDGVDLSVREGS---LVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVA 80 (402)
T ss_pred EEEeeEEEEECCEEEEEeeEEEECCCC---EEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceE
Confidence 346789999999999999999999999 99999999999999999999999 89999999996421 35689
Q ss_pred ccCCCCcccccchHHHHHHHHhcC---------C-----------CccC-ccccccccCccCCceeecCCccEEEEecce
Q 038045 109 GNFDDPRLTDYDTLLENVRDLREG---------K-----------PVQV-PIYDFESSSRTGYRTVEVPSSRIVIIEGIY 167 (621)
Q Consensus 109 ~vfQdp~l~d~~tV~enL~~L~~g---------k-----------~V~~-p~yd~~~~~rsggq~qrVa~ArVLIvEG~l 167 (621)
+++|++.++..+++.+++...+.. . .+.+ ...+....++|+|++|++.++++++.+|.+
T Consensus 81 ~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~i 160 (402)
T PRK09536 81 SVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPV 160 (402)
T ss_pred EEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 999999998889999999753210 0 0111 113344578899999999999999999999
Q ss_pred eccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 168 ALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 168 LLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
+++|||++.||+. ....+..+.+.+.+.|.|++.++|+++.+. .++|++.++++|.+...+.+.++
T Consensus 161 LLLDEPtsgLD~~-------~~~~l~~lL~~l~~~g~TIIivsHdl~~~~----~~adrii~l~~G~iv~~G~~~ev 226 (402)
T PRK09536 161 LLLDEPTASLDIN-------HQVRTLELVRRLVDDGKTAVAAIHDLDLAA----RYCDELVLLADGRVRAAGPPADV 226 (402)
T ss_pred EEEECCcccCCHH-------HHHHHHHHHHHHHhcCCEEEEEECCHHHHH----HhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999973 234455566666567899999999999997 78899999999998888777776
No 81
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.88 E-value=3.3e-23 Score=207.69 Aligned_cols=193 Identities=18% Similarity=0.138 Sum_probs=153.9
Q ss_pred eecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc---------cccc
Q 038045 38 IQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS---------SRVV 107 (621)
Q Consensus 38 v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~---------~R~I 107 (621)
..+++++.++...+++++||++.+|+ ++||+|+||||||||+++|+|++ |..|.|.++|.... ++.+
T Consensus 3 ~~~~l~~~~~~~~il~~~s~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 79 (240)
T PRK09493 3 EFKNVSKHFGPTQVLHNIDLNIDQGE---VVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA 79 (240)
T ss_pred EEEeEEEEECCeEEeeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhce
Confidence 35678888887889999999999999 99999999999999999999998 89999999996421 2368
Q ss_pred cccCCCCcccccchHHHHHHHHh---cCC--------------CccC-ccccccccCccCCceeecCCccEEEEecceec
Q 038045 108 DGNFDDPRLTDYDTLLENVRDLR---EGK--------------PVQV-PIYDFESSSRTGYRTVEVPSSRIVIIEGIYAL 169 (621)
Q Consensus 108 g~vfQdp~l~d~~tV~enL~~L~---~gk--------------~V~~-p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLL 169 (621)
+|++|++.+++..++.+|+.+.. .+. .+.+ +..+.....+|+|+++++..+++++.+|.+++
T Consensus 80 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 159 (240)
T PRK09493 80 GMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLML 159 (240)
T ss_pred EEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999998899999997532 110 0111 12344567889999999999999999999999
Q ss_pred cccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 170 SEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 170 lDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
+|||++.+|+. ....+.++.+.+.+.|.|++.++|+.+... ..+|++.++.+|.+...+...++
T Consensus 160 lDEP~~~LD~~-------~~~~l~~~l~~~~~~~~tiii~sH~~~~~~----~~~d~i~~l~~G~i~~~g~~~~~ 223 (240)
T PRK09493 160 FDEPTSALDPE-------LRHEVLKVMQDLAEEGMTMVIVTHEIGFAE----KVASRLIFIDKGRIAEDGDPQVL 223 (240)
T ss_pred EcCCcccCCHH-------HHHHHHHHHHHHHHcCCEEEEEeCCHHHHH----HhCCEEEEEECCEEEeeCCHHHH
Confidence 99999999973 234455555555566899999999999876 66788888888887765555544
No 82
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.88 E-value=2.9e-23 Score=204.29 Aligned_cols=180 Identities=14% Similarity=0.158 Sum_probs=140.7
Q ss_pred cceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc--ccccccccCCCCcc
Q 038045 40 DPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND--SSRVVDGNFDDPRL 116 (621)
Q Consensus 40 ~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~--~~R~Ig~vfQdp~l 116 (621)
+++++.++...+++++||++++|+ ++||+||||||||||+++|+|++ |+.|.|.++|... .++.++|+||++.+
T Consensus 3 ~~l~~~~~~~~~l~~isl~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~ 79 (213)
T cd03235 3 EDLTVSYGGHPVLEDVSFEVKPGE---FLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSI 79 (213)
T ss_pred ccceeEECCEEeeecceeEEcCCC---EEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEecccccc
Confidence 567777777889999999999999 99999999999999999999998 8999999999642 24569999999876
Q ss_pred cc--cchHHHHHHHHhcCC--------------------CccCc-cccccccCccCCceeecCCccEEEEecceeccccc
Q 038045 117 TD--YDTLLENVRDLREGK--------------------PVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKL 173 (621)
Q Consensus 117 ~d--~~tV~enL~~L~~gk--------------------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp 173 (621)
++ ..++.+|+....... .+.++ ..+.....+|+|+++++..+++++.+|.++++|||
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEP 159 (213)
T cd03235 80 DRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEP 159 (213)
T ss_pred ccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 32 379999987632110 00111 12344578899999999999999999999999999
Q ss_pred cCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCC
Q 038045 174 RPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEG 233 (621)
Q Consensus 174 ~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg 233 (621)
++.||+. ..+.+.++.+.+.+.|.|++.++|+.++.. ..+|++.++.++
T Consensus 160 t~~LD~~-------~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~----~~~d~i~~l~~~ 208 (213)
T cd03235 160 FAGVDPK-------TQEDIYELLRELRREGMTILVVTHDLGLVL----EYFDRVLLLNRT 208 (213)
T ss_pred cccCCHH-------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHH----HhcCEEEEEcCc
Confidence 9999973 234445555555557899999999998876 556666666654
No 83
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.7e-23 Score=218.97 Aligned_cols=194 Identities=14% Similarity=0.172 Sum_probs=153.9
Q ss_pred eecceeeeeCc-----EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc---------
Q 038045 38 IQDPLSFEKGF-----FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND--------- 102 (621)
Q Consensus 38 v~~~lsf~~G~-----~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~--------- 102 (621)
..++++|.|+. ..+|+++||++++|+ +++|+||||||||||+++|+|++ |+.|.|.++|...
T Consensus 4 ~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge---~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 80 (305)
T PRK13651 4 KVKNIVKIFNKKLPTELKALDNVSVEINQGE---FIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEK 80 (305)
T ss_pred EEEEEEEEECCCCCccccceeeeEEEEeCCC---EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccc
Confidence 46678777753 259999999999999 99999999999999999999999 8999999986421
Q ss_pred ----------------------ccccccccCCCCc-ccccchHHHHHHHHhc--C--------------CCccCc--ccc
Q 038045 103 ----------------------SSRVVDGNFDDPR-LTDYDTLLENVRDLRE--G--------------KPVQVP--IYD 141 (621)
Q Consensus 103 ----------------------~~R~Ig~vfQdp~-l~d~~tV~enL~~L~~--g--------------k~V~~p--~yd 141 (621)
.++.+||+||+|. .+...++.+|+.+... + +.+.+. ..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~ 160 (305)
T PRK13651 81 EKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ 160 (305)
T ss_pred cccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 1245899999874 3445799999976321 1 012222 244
Q ss_pred ccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhcccc
Q 038045 142 FESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNL 221 (621)
Q Consensus 142 ~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v 221 (621)
..+..+|+|++++++.+++++.+|.++++|||++.||+. ..+.+..+.+.+.+.|.|++.++|+++.+.
T Consensus 161 ~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~-------~~~~l~~~l~~l~~~g~tiiivtHd~~~~~---- 229 (305)
T PRK13651 161 RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQ-------GVKEILEIFDNLNKQGKTIILVTHDLDNVL---- 229 (305)
T ss_pred CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH-------HHHHHHHHHHHHHHCCCEEEEEeeCHHHHH----
Confidence 566789999999999999999999999999999999973 344555566666667999999999999887
Q ss_pred ccchhhhcCCCCceeeccCceeEE
Q 038045 222 SVDQIKAVYPEGHTETMEQTYDIY 245 (621)
Q Consensus 222 ~~~d~iavl~eg~Ie~~~~~aDIY 245 (621)
..+|++.++.+|.+...+...+++
T Consensus 230 ~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 230 EWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred HhCCEEEEEECCEEEEECCHHHHh
Confidence 778889999999887776666653
No 84
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.88 E-value=3.3e-23 Score=203.37 Aligned_cols=182 Identities=21% Similarity=0.232 Sum_probs=145.5
Q ss_pred ecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc---------cccccc
Q 038045 39 QDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND---------SSRVVD 108 (621)
Q Consensus 39 ~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~---------~~R~Ig 108 (621)
.+++++.++...+++++||++++|+ ++||+||||||||||+++|+|++ |..|.|.++|... ..+.++
T Consensus 3 ~~~l~~~~~~~~~l~~~s~~i~~G~---~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (213)
T cd03262 3 IKNLHKSFGDFHVLKGIDLTVKKGE---VVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVG 79 (213)
T ss_pred EEEEEEEECCeEeecCceEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcce
Confidence 4678888887889999999999999 99999999999999999999999 8999999998632 124689
Q ss_pred ccCCCCcccccchHHHHHHHHh---cCC--------------CccCc-cccccccCccCCceeecCCccEEEEecceecc
Q 038045 109 GNFDDPRLTDYDTLLENVRDLR---EGK--------------PVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYALS 170 (621)
Q Consensus 109 ~vfQdp~l~d~~tV~enL~~L~---~gk--------------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLl 170 (621)
|++|++.+++..++.+|+.... .+. ...++ ..+.....+|+|+++++..+++++.+|.++++
T Consensus 80 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll 159 (213)
T cd03262 80 MVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLF 159 (213)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999998899999987532 110 01111 12344578899999999999999999999999
Q ss_pred ccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCc
Q 038045 171 EKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGH 234 (621)
Q Consensus 171 DEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~ 234 (621)
|||++.||.. ..+.+.++.+.+.+.|.|++.++|+..... .++|++.++++|.
T Consensus 160 DEP~~~LD~~-------~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~----~~~d~i~~l~~g~ 212 (213)
T cd03262 160 DEPTSALDPE-------LVGEVLDVMKDLAEEGMTMVVVTHEMGFAR----EVADRVIFMDDGR 212 (213)
T ss_pred eCCccCCCHH-------HHHHHHHHHHHHHHcCCEEEEEeCCHHHHH----HhCCEEEEEeCCc
Confidence 9999999962 345566666666667899999999998876 5666666666553
No 85
>PRK10908 cell division protein FtsE; Provisional
Probab=99.88 E-value=3.8e-23 Score=204.93 Aligned_cols=183 Identities=20% Similarity=0.154 Sum_probs=144.6
Q ss_pred ecceeeee-CcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc----------cccc
Q 038045 39 QDPLSFEK-GFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND----------SSRV 106 (621)
Q Consensus 39 ~~~lsf~~-G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~----------~~R~ 106 (621)
.+++++.+ +...+++++||++++|+ ++||+||||||||||+++|+|++ |+.|.|.++|... .++.
T Consensus 4 ~~~l~~~~~~~~~~l~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 4 FEHVSKAYLGGRQALQGVTFHMRPGE---MAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred EEeeEEEecCCCeEEeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 56777777 66789999999999999 99999999999999999999999 8999999998632 1246
Q ss_pred ccccCCCCcccccchHHHHHHHHhc--CC--------------CccC-ccccccccCccCCceeecCCccEEEEecceec
Q 038045 107 VDGNFDDPRLTDYDTLLENVRDLRE--GK--------------PVQV-PIYDFESSSRTGYRTVEVPSSRIVIIEGIYAL 169 (621)
Q Consensus 107 Ig~vfQdp~l~d~~tV~enL~~L~~--gk--------------~V~~-p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLL 169 (621)
++|++|++.+++..++.+|+..... +. .+.+ +..+.....+|+|+++++..+++++.+|.+++
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 160 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLL 160 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 8999999988888999999976321 10 0111 11234457889999999999999999999999
Q ss_pred cccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCce
Q 038045 170 SEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHT 235 (621)
Q Consensus 170 lDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~I 235 (621)
+|||++.||+. ..+.+..+.+.+.+.|.+++.++|++.... .++|++.++++|.+
T Consensus 161 lDEPt~~LD~~-------~~~~l~~~l~~~~~~~~tiii~sH~~~~~~----~~~d~i~~l~~G~i 215 (222)
T PRK10908 161 ADEPTGNLDDA-------LSEGILRLFEEFNRVGVTVLMATHDIGLIS----RRSYRMLTLSDGHL 215 (222)
T ss_pred EeCCCCcCCHH-------HHHHHHHHHHHHHHCCCEEEEEeCCHHHHH----HhCCEEEEEECCEE
Confidence 99999999973 234455555555566899999999998876 56666667766654
No 86
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.88 E-value=3.2e-23 Score=203.45 Aligned_cols=180 Identities=18% Similarity=0.185 Sum_probs=139.4
Q ss_pred cceeeeeCc--EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-------ccccccc
Q 038045 40 DPLSFEKGF--FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-------SSRVVDG 109 (621)
Q Consensus 40 ~~lsf~~G~--~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-------~~R~Ig~ 109 (621)
+++++.++. ..+++++||++++|+ ++||+||||||||||+++|+|++ |..|.|.++|... ..+.++|
T Consensus 3 ~~l~~~~~~~~~~il~~vs~~i~~G~---~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 3 KNLSFSYPDGARPALDDISLTIKKGE---FVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred eeEEEecCCCCeeeecceEEEEcCCc---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 467777766 789999999999999 99999999999999999999999 8999999998632 1246899
Q ss_pred cCCCCc-ccccchHHHHHHHHhc--CC--------------CccCc-cccccccCccCCceeecCCccEEEEecceeccc
Q 038045 110 NFDDPR-LTDYDTLLENVRDLRE--GK--------------PVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSE 171 (621)
Q Consensus 110 vfQdp~-l~d~~tV~enL~~L~~--gk--------------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlD 171 (621)
++|++. .++..++.+|+..... +. .+.+. ..+.....+|+|+++++..+++++.+|.++++|
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD 159 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLD 159 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 999985 3667899999865321 00 01111 123456788999999999999999999999999
Q ss_pred cccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCC
Q 038045 172 KLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEG 233 (621)
Q Consensus 172 Ep~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg 233 (621)
||++.||+. ....+.++.+.+.+.|.+++.++|+.+... .++|++.++.+|
T Consensus 160 EPt~~LD~~-------~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~----~~~d~i~~l~~G 210 (211)
T cd03225 160 EPTAGLDPA-------GRRELLELLKKLKAEGKTIIIVTHDLDLLL----ELADRVIVLEDG 210 (211)
T ss_pred CCcccCCHH-------HHHHHHHHHHHHHHcCCEEEEEeCCHHHHH----HhCCEEEEEeCC
Confidence 999999973 234455555555556899999999998876 555665555543
No 87
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.88 E-value=3.5e-23 Score=208.41 Aligned_cols=194 Identities=17% Similarity=0.153 Sum_probs=154.3
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-------------
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND------------- 102 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~------------- 102 (621)
...+++++.++...+++++||++++|+ ++||+||||||||||+++|+|++ |..|.|.++|...
T Consensus 4 l~~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 4 IEVKNLVKKFHGQTVLHGIDLEVKPGE---VVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred EEEeceEEEECCeeeeccceEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 346788888888889999999999999 99999999999999999999998 8999999998521
Q ss_pred --ccccccccCCCCcccccchHHHHHHHHh---cCC--------------CccCc-cccccccCccCCceeecCCccEEE
Q 038045 103 --SSRVVDGNFDDPRLTDYDTLLENVRDLR---EGK--------------PVQVP-IYDFESSSRTGYRTVEVPSSRIVI 162 (621)
Q Consensus 103 --~~R~Ig~vfQdp~l~d~~tV~enL~~L~---~gk--------------~V~~p-~yd~~~~~rsggq~qrVa~ArVLI 162 (621)
.++.++|++|++.+++..++.+|+.... .+. .+.+. ..+.....+|+|+++++..+++++
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~ 160 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALA 160 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHh
Confidence 1246899999999998899999997521 110 01111 123446788999999999999999
Q ss_pred EecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCce
Q 038045 163 IEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTY 242 (621)
Q Consensus 163 vEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~a 242 (621)
.+|.++++|||++.||.. ..+.+.++.+.+.+.|.|++.++|+..... .++|++.++.+|.+...+...
T Consensus 161 ~~p~lllLDEPt~~LD~~-------~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~----~~~d~i~~l~~G~i~~~~~~~ 229 (250)
T PRK11264 161 MRPEVILFDEPTSALDPE-------LVGEVLNTIRQLAQEKRTMVIVTHEMSFAR----DVADRAIFMDQGRIVEQGPAK 229 (250)
T ss_pred cCCCEEEEeCCCccCCHH-------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHH----HhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999973 234455555555566899999999998876 677888889888876655555
Q ss_pred eE
Q 038045 243 DI 244 (621)
Q Consensus 243 DI 244 (621)
++
T Consensus 230 ~~ 231 (250)
T PRK11264 230 AL 231 (250)
T ss_pred HH
Confidence 54
No 88
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=4.8e-23 Score=206.75 Aligned_cols=193 Identities=16% Similarity=0.140 Sum_probs=152.8
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-------------
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND------------- 102 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~------------- 102 (621)
...+++++.++...+++++||++++|+ ++||+||||||||||+++|+|+. |..|.|.++|...
T Consensus 3 l~~~~l~~~~~~~~il~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 3 IQLNGINCFYGAHQALFDITLDCPQGE---TLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEeeEEEECCeeeEeeeeeEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 346778888888889999999999999 99999999999999999999999 8999999998632
Q ss_pred ccccccccCCCCcccccchHHHHHHHH-h--cCC--------------CccCc-cccccccCccCCceeecCCccEEEEe
Q 038045 103 SSRVVDGNFDDPRLTDYDTLLENVRDL-R--EGK--------------PVQVP-IYDFESSSRTGYRTVEVPSSRIVIIE 164 (621)
Q Consensus 103 ~~R~Ig~vfQdp~l~d~~tV~enL~~L-~--~gk--------------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvE 164 (621)
.++.++|++|++.+++..++.+|+... . .+. .+.++ ..+.....+|+|++++++.+++++.+
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~ 159 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMME 159 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 123689999999999999999998631 1 010 11111 23445678899999999999999999
Q ss_pred cceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCcee
Q 038045 165 GIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYD 243 (621)
Q Consensus 165 G~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aD 243 (621)
|.++++|||++.||+. ..+.+.++.+.+.+.|.|++.++|+..... ..+|++.++.+|.+...+...+
T Consensus 160 p~llilDEPt~~LD~~-------~~~~l~~~l~~~~~~~~tii~~sh~~~~~~----~~~d~i~~l~~g~i~~~~~~~~ 227 (242)
T PRK11124 160 PQVLLFDEPTAALDPE-------ITAQIVSIIRELAETGITQVIVTHEVEVAR----KTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred CCEEEEcCCCCcCCHH-------HHHHHHHHHHHHHHcCCEEEEEeCCHHHHH----HhcCEEEEEECCEEEEeCCHHH
Confidence 9999999999999973 234555555555567999999999998876 5667777888887765544443
No 89
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=3.1e-23 Score=207.48 Aligned_cols=194 Identities=14% Similarity=0.080 Sum_probs=155.6
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc--------ccccc
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND--------SSRVV 107 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~--------~~R~I 107 (621)
...+++++.++...+++++||++++|+ ++||+||||||||||+++|+|++ |..|.|.++|... ..+.+
T Consensus 6 l~~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 82 (237)
T PRK11614 6 LSFDKVSAHYGKIQALHEVSLHINQGE---IVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV 82 (237)
T ss_pred EEEEeEEEeeCCceeeeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCE
Confidence 446788888887889999999999999 99999999999999999999999 8999999999632 12468
Q ss_pred cccCCCCcccccchHHHHHHHHhc--C-CC-----------c-cCc-cccccccCccCCceeecCCccEEEEecceeccc
Q 038045 108 DGNFDDPRLTDYDTLLENVRDLRE--G-KP-----------V-QVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSE 171 (621)
Q Consensus 108 g~vfQdp~l~d~~tV~enL~~L~~--g-k~-----------V-~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlD 171 (621)
+|++|++.+|+..++.+|+..... . .. + ... ..+.....+|+|+++++..+++++.+|.++++|
T Consensus 83 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlD 162 (237)
T PRK11614 83 AIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLD 162 (237)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEc
Confidence 999999999998999999976321 0 00 0 000 112345678999999999999999999999999
Q ss_pred cccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 172 KLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 172 Ep~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
||+..||+. ..+.+.++.+.+.+.|.|++.++|+.++.. .++|++.++.+|.+...+...++
T Consensus 163 EPt~~LD~~-------~~~~l~~~l~~~~~~~~tiii~sH~~~~~~----~~~d~i~~l~~G~i~~~~~~~~~ 224 (237)
T PRK11614 163 EPSLGLAPI-------IIQQIFDTIEQLREQGMTIFLVEQNANQAL----KLADRGYVLENGHVVLEDTGDAL 224 (237)
T ss_pred CccccCCHH-------HHHHHHHHHHHHHHCCCEEEEEeCcHHHHH----hhCCEEEEEeCCEEEeeCCHHHH
Confidence 999999973 234555555556667999999999998877 77888888998888776666665
No 90
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=2.7e-23 Score=213.63 Aligned_cols=191 Identities=15% Similarity=0.130 Sum_probs=151.9
Q ss_pred eecceeeeeC-cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc-------ccccc
Q 038045 38 IQDPLSFEKG-FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS-------SRVVD 108 (621)
Q Consensus 38 v~~~lsf~~G-~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~-------~R~Ig 108 (621)
..+++++.++ ...+++++||++++|+ ++||+||||||||||+++|+|++ |+.|.|.++|.... .+.++
T Consensus 6 ~~~~l~~~~~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 6 EVEDLHFRYKDGTKALKGLSLSIPEGS---KTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred EEEEEEEEeCCCCeeeeeEEEEEcCCC---EEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 4677888874 5679999999999999 99999999999999999999999 89999999996421 24689
Q ss_pred ccCCCCc-ccccchHHHHHHHHhcCC----------------CccC-ccccccccCccCCceeecCCccEEEEecceecc
Q 038045 109 GNFDDPR-LTDYDTLLENVRDLREGK----------------PVQV-PIYDFESSSRTGYRTVEVPSSRIVIIEGIYALS 170 (621)
Q Consensus 109 ~vfQdp~-l~d~~tV~enL~~L~~gk----------------~V~~-p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLl 170 (621)
|+||+|. .+...++.+|+.+..... .+.+ +..+..+..+|+|+++++..+++++.+|.++++
T Consensus 83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llll 162 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVL 162 (274)
T ss_pred EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999984 455679999998632110 0111 223455678999999999999999999999999
Q ss_pred ccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCce
Q 038045 171 EKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTY 242 (621)
Q Consensus 171 DEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~a 242 (621)
|||++.||+. ....+.++.+.+.+.|.|++.++|+++.+. .++|++.++++|.+...+...
T Consensus 163 DEPt~~LD~~-------~~~~l~~~l~~~~~~g~tili~tH~~~~~~----~~~d~i~~l~~G~i~~~g~~~ 223 (274)
T PRK13647 163 DEPMAYLDPR-------GQETLMEILDRLHNQGKTVIVATHDVDLAA----EWADQVIVLKEGRVLAEGDKS 223 (274)
T ss_pred ECCCcCCCHH-------HHHHHHHHHHHHHHCCCEEEEEeCCHHHHH----HhCCEEEEEECCEEEEECCHH
Confidence 9999999973 234555555555556999999999999887 778888899999876655543
No 91
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=2.3e-23 Score=215.77 Aligned_cols=193 Identities=15% Similarity=0.207 Sum_probs=152.9
Q ss_pred eecceeeeeCc-----EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc---------
Q 038045 38 IQDPLSFEKGF-----FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND--------- 102 (621)
Q Consensus 38 v~~~lsf~~G~-----~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~--------- 102 (621)
..++++|.++. ..+|+++||++.+|+ +++|+||||||||||+++|+|++ |+.|.|.+||...
T Consensus 3 ~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge---~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 79 (288)
T PRK13643 3 KFEKVNYTYQPNSPFASRALFDIDLEVKKGS---YTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEI 79 (288)
T ss_pred EEEEEEEEeCCCCcccccceeeeEEEEcCCC---EEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccH
Confidence 35677777752 259999999999999 99999999999999999999999 8999999999742
Q ss_pred --ccccccccCCCC--cccccchHHHHHHHHhcC----------------CCccCc--cccccccCccCCceeecCCccE
Q 038045 103 --SSRVVDGNFDDP--RLTDYDTLLENVRDLREG----------------KPVQVP--IYDFESSSRTGYRTVEVPSSRI 160 (621)
Q Consensus 103 --~~R~Ig~vfQdp--~l~d~~tV~enL~~L~~g----------------k~V~~p--~yd~~~~~rsggq~qrVa~ArV 160 (621)
.++.++|+||+| .+|+ .++.+|+.+.... +.+.+. ..+.....+|+|++++++++++
T Consensus 80 ~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~a 158 (288)
T PRK13643 80 KPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGI 158 (288)
T ss_pred HHHHhhEEEEecCcchhccc-chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHH
Confidence 124689999998 3554 5999999764311 011221 2345567889999999999999
Q ss_pred EEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccC
Q 038045 161 VIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQ 240 (621)
Q Consensus 161 LIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~ 240 (621)
++.+|.++++|||++.||+. ..+.+..+.+.+.+.|.|++.++|+++.+. .++|++.++.+|.+...+.
T Consensus 159 L~~~p~illLDEPt~gLD~~-------~~~~l~~~l~~l~~~g~til~vtHd~~~~~----~~~dri~~l~~G~i~~~g~ 227 (288)
T PRK13643 159 LAMEPEVLVLDEPTAGLDPK-------ARIEMMQLFESIHQSGQTVVLVTHLMDDVA----DYADYVYLLEKGHIISCGT 227 (288)
T ss_pred HHhCCCEEEEECCccCCCHH-------HHHHHHHHHHHHHHCCCEEEEEecCHHHHH----HhCCEEEEEECCEEEEECC
Confidence 99999999999999999973 234444555555556999999999998887 7788999999999887777
Q ss_pred ceeEE
Q 038045 241 TYDIY 245 (621)
Q Consensus 241 ~aDIY 245 (621)
+.+++
T Consensus 228 ~~~~~ 232 (288)
T PRK13643 228 PSDVF 232 (288)
T ss_pred HHHHH
Confidence 76653
No 92
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.88 E-value=1.1e-23 Score=212.44 Aligned_cols=195 Identities=18% Similarity=0.170 Sum_probs=160.8
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc--------ccccc
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND--------SSRVV 107 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~--------~~R~I 107 (621)
..+++++..+|...|++++||++++|+ ++||+||||||||||+++|.|++ |+.|.|.++|... .++.+
T Consensus 5 L~v~~l~k~FGGl~Al~~Vsl~v~~Ge---i~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 5 LEVRGLSKRFGGLTAVNDVSLEVRPGE---IVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred eeeccceeecCCEEEEeceeEEEcCCe---EEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 457889999999999999999999999 99999999999999999999999 9999999999732 12356
Q ss_pred cccCCCCcccccchHHHHHHHHhcCC----------------------------CccC-ccccccccCccCCceeecCCc
Q 038045 108 DGNFDDPRLTDYDTLLENVRDLREGK----------------------------PVQV-PIYDFESSSRTGYRTVEVPSS 158 (621)
Q Consensus 108 g~vfQdp~l~d~~tV~enL~~L~~gk----------------------------~V~~-p~yd~~~~~rsggq~qrVa~A 158 (621)
.-.||++.+|+.+||.||+....... .+.+ +..+...+.++.|++.++.++
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIA 161 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIA 161 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHH
Confidence 77999999999999999997632100 0111 123334567788899999999
Q ss_pred cEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHH-cCCCceehHhHHHHHhccccccchhhhcCCCCceee
Q 038045 159 RIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQR-VGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTET 237 (621)
Q Consensus 159 rVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~e-rG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~ 237 (621)
+++..+|.++|+|||...+.+. +..-+..+++.+.+ .|.|+..|.|+|..++ ..||++.||+.|.+..
T Consensus 162 rALa~~P~lLLLDEPaAGln~~-------e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm----~l~dri~Vl~~G~~IA 230 (250)
T COG0411 162 RALATQPKLLLLDEPAAGLNPE-------ETEELAELIRELRDRGGVTILLIEHDMKLVM----GLADRIVVLNYGEVIA 230 (250)
T ss_pred HHHhcCCCEEEecCccCCCCHH-------HHHHHHHHHHHHHhcCCcEEEEEEeccHHHh----hhccEEEeccCCcCcc
Confidence 9999999999999999999963 33444445555555 5799999999999998 8999999999999999
Q ss_pred ccCceeEE
Q 038045 238 MEQTYDIY 245 (621)
Q Consensus 238 ~~~~aDIY 245 (621)
.++++++.
T Consensus 231 eG~P~eV~ 238 (250)
T COG0411 231 EGTPEEVR 238 (250)
T ss_pred cCCHHHHh
Confidence 99998873
No 93
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.88 E-value=3.4e-23 Score=211.64 Aligned_cols=189 Identities=17% Similarity=0.169 Sum_probs=150.1
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcc--cccccccccCCC
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYN--DSSRVVDGNFDD 113 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~--~~~R~Ig~vfQd 113 (621)
...+++++.++...+|+++||++++|+ ++||+||||||||||+++|+|++ |+.|.|.++|.. ...+.++|+||+
T Consensus 13 l~i~~l~~~~~~~~il~~isl~i~~Ge---~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~ 89 (257)
T PRK11247 13 LLLNAVSKRYGERTVLNQLDLHIPAGQ---FVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQD 89 (257)
T ss_pred EEEEEEEEEECCcceeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecC
Confidence 346788888888889999999999999 99999999999999999999999 899999998863 224568999999
Q ss_pred CcccccchHHHHHHHHhcC----------CCccC-ccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEE
Q 038045 114 PRLTDYDTLLENVRDLREG----------KPVQV-PIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVS 182 (621)
Q Consensus 114 p~l~d~~tV~enL~~L~~g----------k~V~~-p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~ 182 (621)
+.+++..++.+|+.+.... +.+.+ ...+.....+|+|+++++..+++++.+|.++++|||++.||+.
T Consensus 90 ~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~-- 167 (257)
T PRK11247 90 ARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDAL-- 167 (257)
T ss_pred ccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH--
Confidence 9999989999999753211 01111 1234456789999999999999999999999999999999973
Q ss_pred ecCCchHHHHHHHHHHH-HHcCCCceehHhHHHHHhccccccchhhhcCCCCceeecc
Q 038045 183 VTGGVHFDLVKRVLRDI-QRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETME 239 (621)
Q Consensus 183 Vd~~~d~~LirRI~Rdl-~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~ 239 (621)
....+..+.+.+ ++.|.|++.++|+.+... ..+|++.++.+|.+....
T Consensus 168 -----~~~~l~~~L~~~~~~~~~tviivsHd~~~~~----~~~d~i~~l~~G~i~~~~ 216 (257)
T PRK11247 168 -----TRIEMQDLIESLWQQHGFTVLLVTHDVSEAV----AMADRVLLIEEGKIGLDL 216 (257)
T ss_pred -----HHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH----HhCCEEEEEECCEEEeec
Confidence 233444444443 456899999999998775 567777778888775543
No 94
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.88 E-value=5.4e-23 Score=205.90 Aligned_cols=191 Identities=16% Similarity=0.140 Sum_probs=149.9
Q ss_pred ecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc------cccccccC
Q 038045 39 QDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS------SRVVDGNF 111 (621)
Q Consensus 39 ~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~------~R~Ig~vf 111 (621)
.+++++.++...+++++||++.+|+ ++||+||||||||||+++|+|+. |+.|.|.++|.... .+.++|++
T Consensus 4 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~ 80 (236)
T TIGR03864 4 VAGLSFAYGARRALDDVSFTVRPGE---FVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVF 80 (236)
T ss_pred EEeeEEEECCEEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeC
Confidence 5678888888889999999999999 99999999999999999999998 89999999986321 14689999
Q ss_pred CCCcccccchHHHHHHHHhcCC----------------CccC-ccccccccCccCCceeecCCccEEEEecceecccccc
Q 038045 112 DDPRLTDYDTLLENVRDLREGK----------------PVQV-PIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLR 174 (621)
Q Consensus 112 Qdp~l~d~~tV~enL~~L~~gk----------------~V~~-p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~ 174 (621)
|++.+++..++.+|+....... .+.+ +..+.....+|+|+++++..+++++.+|.++++|||+
T Consensus 81 q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~ 160 (236)
T TIGR03864 81 QQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPT 160 (236)
T ss_pred CCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 9998888899999987532110 0111 1234456788999999999999999999999999999
Q ss_pred CCCCeeEEecCCchHHHHHHHHHHHH-HcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 175 PLLDLRVSVTGGVHFDLVKRVLRDIQ-RVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 175 s~LDlkV~Vd~~~d~~LirRI~Rdl~-erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
+.||+. ..+.+.++.+.+. +.|.|++.++|+.+... . +|++.++.+|.+...++..++
T Consensus 161 ~~LD~~-------~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~----~-~d~i~~l~~G~i~~~~~~~~~ 219 (236)
T TIGR03864 161 VGLDPA-------SRAAIVAHVRALCRDQGLSVLWATHLVDEIE----A-DDRLVVLHRGRVLADGAAAEL 219 (236)
T ss_pred cCCCHH-------HHHHHHHHHHHHHHhCCCEEEEEecChhhHh----h-CCEEEEEeCCeEEEeCCHHHH
Confidence 999973 2344444444444 46899999999998774 4 777888888877655444433
No 95
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=2.2e-23 Score=225.84 Aligned_cols=191 Identities=16% Similarity=0.182 Sum_probs=153.1
Q ss_pred eeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc-----------cccccccCC
Q 038045 45 EKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS-----------SRVVDGNFD 112 (621)
Q Consensus 45 ~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~-----------~R~Ig~vfQ 112 (621)
.+|...+|+++||++++|+ +++|+||||||||||+++|+|++ |..|.|.++|.... ++.++|+||
T Consensus 37 ~~~~~~~L~~isl~i~~Ge---i~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q 113 (400)
T PRK10070 37 KTGLSLGVKDASLAIEEGE---IFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQ 113 (400)
T ss_pred hcCCeEEEEeEEEEEcCCC---EEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEEC
Confidence 3466678999999999999 99999999999999999999999 89999999986311 246899999
Q ss_pred CCcccccchHHHHHHHHhc--CC--------------CccCc-cccccccCccCCceeecCCccEEEEecceeccccccC
Q 038045 113 DPRLTDYDTLLENVRDLRE--GK--------------PVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRP 175 (621)
Q Consensus 113 dp~l~d~~tV~enL~~L~~--gk--------------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s 175 (621)
++.+|+++|+.+|+.+... +. .+.+. ..+..+.++|+|++|++..+++++.+|.++|+|||++
T Consensus 114 ~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts 193 (400)
T PRK10070 114 SFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFS 193 (400)
T ss_pred CCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 9999999999999986421 10 11111 2344567899999999999999999999999999999
Q ss_pred CCCeeEEecCCchHHHHHHHHHHH-HHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEEecCC
Q 038045 176 LLDLRVSVTGGVHFDLVKRVLRDI-QRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIYLLPP 249 (621)
Q Consensus 176 ~LDlkV~Vd~~~d~~LirRI~Rdl-~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIYi~P~ 249 (621)
.||+.. .+.+..+.+.+ .+.|.|++.++|+++++. ..+|++.++.+|.+.+.++..+++-.|.
T Consensus 194 ~LD~~~-------r~~l~~~L~~l~~~~g~TIIivTHd~~~~~----~~~Dri~vL~~G~i~~~g~~~~l~~~~~ 257 (400)
T PRK10070 194 ALDPLI-------RTEMQDELVKLQAKHQRTIVFISHDLDEAM----RIGDRIAIMQNGEVVQVGTPDEILNNPA 257 (400)
T ss_pred cCCHHH-------HHHHHHHHHHHHHHCCCeEEEEECCHHHHH----HhCCEEEEEECCEEEecCCHHHHHhCcc
Confidence 999732 33444444444 446999999999999887 7788899999999888777777643343
No 96
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=4.5e-23 Score=217.78 Aligned_cols=198 Identities=14% Similarity=0.148 Sum_probs=154.7
Q ss_pred eecceeeee----CcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhCC-----CeeEEEECCcccc-----
Q 038045 38 IQDPLSFEK----GFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFMP-----SIAVISMDNYNDS----- 103 (621)
Q Consensus 38 v~~~lsf~~----G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP-----~sGvI~lDg~~~~----- 103 (621)
..+++++.| |...+|++|||++.+|+ ++||+|+||||||||+++|+|+++ +.|.|.++|....
T Consensus 5 ~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge---~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 5 DIRNLTIEFKTSDGWVKAVDRVSMTLTEGE---IRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred EEeeeEEEEeCCCCCEEEEeeeEEEECCCC---EEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence 356777766 56789999999999999 999999999999999999999982 6899999986321
Q ss_pred ------cccccccCCCCc--ccccchHHHHHHHHhc-----C-----------------CCccCc----cccccccCccC
Q 038045 104 ------SRVVDGNFDDPR--LTDYDTLLENVRDLRE-----G-----------------KPVQVP----IYDFESSSRTG 149 (621)
Q Consensus 104 ------~R~Ig~vfQdp~--l~d~~tV~enL~~L~~-----g-----------------k~V~~p----~yd~~~~~rsg 149 (621)
.+.++|+||++. +++.+++.+++..... + +.+.+. ..+..+.++|+
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSg 161 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTE 161 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCH
Confidence 136899999986 5678888888864210 0 011122 12445678999
Q ss_pred CceeecCCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHH-cCCCceehHhHHHHHhccccccchhhh
Q 038045 150 YRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQR-VGQEPEEIIQQISETSAKNLSVDQIKA 228 (621)
Q Consensus 150 gq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~e-rG~Ti~~VtHd~eea~~R~v~~~d~ia 228 (621)
|++|++.++++++.+|.++++|||++.||... ...+.++.+.+.+ .|.|++.|+|++..+. .++|+++
T Consensus 162 G~~QRv~iArAL~~~P~llilDEPts~LD~~~-------~~~i~~lL~~l~~~~g~tii~itHdl~~v~----~~~dri~ 230 (330)
T PRK15093 162 GECQKVMIAIALANQPRLLIADEPTNAMEPTT-------QAQIFRLLTRLNQNNNTTILLISHDLQMLS----QWADKIN 230 (330)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHH-------HHHHHHHHHHHHHhcCCEEEEEECCHHHHH----HhCCEEE
Confidence 99999999999999999999999999999742 2333444444444 6999999999999987 7889999
Q ss_pred cCCCCceeeccCceeEEecCC
Q 038045 229 VYPEGHTETMEQTYDIYLLPP 249 (621)
Q Consensus 229 vl~eg~Ie~~~~~aDIYi~P~ 249 (621)
+|+.|.+...++..+++-.|.
T Consensus 231 vm~~G~ive~g~~~~i~~~p~ 251 (330)
T PRK15093 231 VLYCGQTVETAPSKELVTTPH 251 (330)
T ss_pred EEECCEEEEECCHHHHHhCCC
Confidence 999999988887777754443
No 97
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=6.8e-23 Score=204.78 Aligned_cols=185 Identities=16% Similarity=0.136 Sum_probs=142.9
Q ss_pred eeecceeeeeCc----EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc--------
Q 038045 37 PIQDPLSFEKGF----FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS-------- 103 (621)
Q Consensus 37 ~v~~~lsf~~G~----~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~-------- 103 (621)
...++++|.++. ..+++++||++++|+ +++|+||||||||||+++|+|++ |..|.|.++|....
T Consensus 6 l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~ 82 (233)
T PRK11629 6 LQCDNLCKRYQEGSVQTDVLHNVSFSIGEGE---MMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKA 82 (233)
T ss_pred EEEEeEEEEcCCCCcceeeEEeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHH
Confidence 346678887753 579999999999999 99999999999999999999999 89999999986321
Q ss_pred ---cccccccCCCCcccccchHHHHHHHHhc--C--C------------CccCc-cccccccCccCCceeecCCccEEEE
Q 038045 104 ---SRVVDGNFDDPRLTDYDTLLENVRDLRE--G--K------------PVQVP-IYDFESSSRTGYRTVEVPSSRIVII 163 (621)
Q Consensus 104 ---~R~Ig~vfQdp~l~d~~tV~enL~~L~~--g--k------------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIv 163 (621)
.+.++|+||++.+++..++.+|+.+... + . .+.+. ..+.....+|+|+++++..+++++.
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~ 162 (233)
T PRK11629 83 ELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVN 162 (233)
T ss_pred HHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 1468999999999988999999976321 1 0 01111 1334457889999999999999999
Q ss_pred ecceeccccccCCCCeeEEecCCchHHHHHHHHHHHH-HcCCCceehHhHHHHHhccccccchhhhcCCCCcee
Q 038045 164 EGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQ-RVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTE 236 (621)
Q Consensus 164 EG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~-erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie 236 (621)
+|.++++|||++.||+. ..+.+.++.+.+. +.|.|++.++|+.+... ..+ ++.++.+|.+.
T Consensus 163 ~p~lllLDEPt~~LD~~-------~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~----~~~-~~~~l~~G~i~ 224 (233)
T PRK11629 163 NPRLVLADEPTGNLDAR-------NADSIFQLLGELNRLQGTAFLVVTHDLQLAK----RMS-RQLEMRDGRLT 224 (233)
T ss_pred CCCEEEEeCCCCCCCHH-------HHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH----hhC-EEEEEECCEEE
Confidence 99999999999999973 2344445555544 46899999999998875 333 44566666554
No 98
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=4.6e-23 Score=207.45 Aligned_cols=193 Identities=17% Similarity=0.239 Sum_probs=153.2
Q ss_pred eecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-------ccccccc
Q 038045 38 IQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-------SSRVVDG 109 (621)
Q Consensus 38 v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-------~~R~Ig~ 109 (621)
..++++|.++...+++++||++.+|+ ++||+||||||||||+++|+|++ |..|.|.++|... .++.++|
T Consensus 5 ~~~~l~~~~~~~~~l~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~ 81 (241)
T PRK14250 5 EFKEVSYSSFGKEILKDISVKFEGGA---IYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGM 81 (241)
T ss_pred EEEeEEEEeCCeeeeeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEE
Confidence 46778888888889999999999999 99999999999999999999998 8999999998632 1346899
Q ss_pred cCCCCcccccchHHHHHHHHhc--CC----------CccCc--cccccccCccCCceeecCCccEEEEecceeccccccC
Q 038045 110 NFDDPRLTDYDTLLENVRDLRE--GK----------PVQVP--IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRP 175 (621)
Q Consensus 110 vfQdp~l~d~~tV~enL~~L~~--gk----------~V~~p--~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s 175 (621)
+||++.+++ .++.+|+..... +. ...++ ..+.....+|+|+++++..+++++.+|.++++|||++
T Consensus 82 ~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~ 160 (241)
T PRK14250 82 VFQQPHLFE-GTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTS 160 (241)
T ss_pred EecCchhch-hhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 999998887 599999874211 10 11221 1234457889999999999999999999999999999
Q ss_pred CCCeeEEecCCchHHHHHHHHHHHHH-cCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEE
Q 038045 176 LLDLRVSVTGGVHFDLVKRVLRDIQR-VGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIY 245 (621)
Q Consensus 176 ~LDlkV~Vd~~~d~~LirRI~Rdl~e-rG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIY 245 (621)
.||.. ..+.+..+.+.+.+ .|.|++.++|+.+... .++|++.++.+|.+...+...+++
T Consensus 161 ~LD~~-------~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~----~~~d~i~~l~~G~i~~~~~~~~~~ 220 (241)
T PRK14250 161 ALDPT-------STEIIEELIVKLKNKMNLTVIWITHNMEQAK----RIGDYTAFLNKGILVEYAKTYDFF 220 (241)
T ss_pred cCCHH-------HHHHHHHHHHHHHHhCCCEEEEEeccHHHHH----HhCCEEEEEeCCEEEEeCCHHHHh
Confidence 99973 23444444444444 5899999999998876 677888889999887766666664
No 99
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=2.7e-23 Score=214.79 Aligned_cols=192 Identities=14% Similarity=0.184 Sum_probs=151.3
Q ss_pred eecceeeeeCc-----EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc---------
Q 038045 38 IQDPLSFEKGF-----FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND--------- 102 (621)
Q Consensus 38 v~~~lsf~~G~-----~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~--------- 102 (621)
-.++++|.|+. ..+|+++||++++|+ ++||+||||||||||+++|+|++ |+.|.|.+||...
T Consensus 4 ~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 80 (286)
T PRK13646 4 RFDNVSYTYQKGTPYEHQAIHDVNTEFEQGK---YYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYI 80 (286)
T ss_pred EEEEEEEEECCCCccccCceeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchH
Confidence 35677777742 469999999999999 99999999999999999999999 8999999999642
Q ss_pred --ccccccccCCCCc--ccccchHHHHHHHHhc--C--------------CCccCc--cccccccCccCCceeecCCccE
Q 038045 103 --SSRVVDGNFDDPR--LTDYDTLLENVRDLRE--G--------------KPVQVP--IYDFESSSRTGYRTVEVPSSRI 160 (621)
Q Consensus 103 --~~R~Ig~vfQdp~--l~d~~tV~enL~~L~~--g--------------k~V~~p--~yd~~~~~rsggq~qrVa~ArV 160 (621)
.++.++|+||+|. +++ .++.+|+.+... + ..+.+. ..+.....+|+|++++++++++
T Consensus 81 ~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lara 159 (286)
T PRK13646 81 RPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSI 159 (286)
T ss_pred HHHHhheEEEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHH
Confidence 1346899999974 454 599999976321 1 012221 2334567889999999999999
Q ss_pred EEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHH-HcCCCceehHhHHHHHhccccccchhhhcCCCCceeecc
Q 038045 161 VIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQ-RVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETME 239 (621)
Q Consensus 161 LIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~-erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~ 239 (621)
++.+|.++++|||++.||+. ..+.+..+.+.+. +.|.|++.++|+++.+. .++|++.++..|.+...+
T Consensus 160 L~~~p~illlDEPt~~LD~~-------~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~----~~~dri~~l~~G~i~~~g 228 (286)
T PRK13646 160 LAMNPDIIVLDEPTAGLDPQ-------SKRQVMRLLKSLQTDENKTIILVSHDMNEVA----RYADEVIVMKEGSIVSQT 228 (286)
T ss_pred HHhCCCEEEEECCcccCCHH-------HHHHHHHHHHHHHHhCCCEEEEEecCHHHHH----HhCCEEEEEECCEEEEEC
Confidence 99999999999999999973 3345555555554 45999999999999876 678888899999887766
Q ss_pred CceeE
Q 038045 240 QTYDI 244 (621)
Q Consensus 240 ~~aDI 244 (621)
...++
T Consensus 229 ~~~~~ 233 (286)
T PRK13646 229 SPKEL 233 (286)
T ss_pred CHHHH
Confidence 66665
No 100
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.88 E-value=5.7e-23 Score=203.07 Aligned_cols=182 Identities=14% Similarity=0.136 Sum_probs=140.0
Q ss_pred ecceeeeeCc----EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc----------
Q 038045 39 QDPLSFEKGF----FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS---------- 103 (621)
Q Consensus 39 ~~~lsf~~G~----~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~---------- 103 (621)
.+++++.++. ..+++++||++++|+ +++|+||||||||||+++|+|++ |..|.|.++|....
T Consensus 4 ~~~v~~~~~~~~~~~~~l~~isl~i~~G~---~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (221)
T TIGR02211 4 CENLGKRYQEGKLDTRVLKGVSLSIGKGE---IVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKL 80 (221)
T ss_pred EEeeeEEccCCCcceEeEeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHH
Confidence 4567777653 579999999999999 99999999999999999999999 89999999986321
Q ss_pred -cccccccCCCCcccccchHHHHHHHHhc--C-C-------------CccC-ccccccccCccCCceeecCCccEEEEec
Q 038045 104 -SRVVDGNFDDPRLTDYDTLLENVRDLRE--G-K-------------PVQV-PIYDFESSSRTGYRTVEVPSSRIVIIEG 165 (621)
Q Consensus 104 -~R~Ig~vfQdp~l~d~~tV~enL~~L~~--g-k-------------~V~~-p~yd~~~~~rsggq~qrVa~ArVLIvEG 165 (621)
.+.++|+||++.+++..++.+|+..... . . ...+ ...+.....+|+|++|++..+++++.+|
T Consensus 81 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 160 (221)
T TIGR02211 81 RNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQP 160 (221)
T ss_pred HHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCC
Confidence 1468999999999988999999975321 0 0 0111 1233445788999999999999999999
Q ss_pred ceeccccccCCCCeeEEecCCchHHHHHHHHHHHH-HcCCCceehHhHHHHHhccccccchhhhcCCCCce
Q 038045 166 IYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQ-RVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHT 235 (621)
Q Consensus 166 ~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~-erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~I 235 (621)
.++++|||++.||+. ..+.+.++.+.+. +.|.|++.++|+..... . +|++.++.+|.+
T Consensus 161 ~illlDEPt~~LD~~-------~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~----~-~d~v~~l~~G~i 219 (221)
T TIGR02211 161 SLVLADEPTGNLDNN-------NAKIIFDLMLELNRELNTSFLVVTHDLELAK----K-LDRVLEMKDGQL 219 (221)
T ss_pred CEEEEeCCCCcCCHH-------HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHh----h-cCEEEEEeCCEe
Confidence 999999999999973 2344444444444 45899999999988664 3 355566665543
No 101
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.88 E-value=5.2e-23 Score=204.36 Aligned_cols=187 Identities=16% Similarity=0.151 Sum_probs=146.7
Q ss_pred ecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC------CCeeEEEECCccc---------c
Q 038045 39 QDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM------PSIAVISMDNYND---------S 103 (621)
Q Consensus 39 ~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl------P~sGvI~lDg~~~---------~ 103 (621)
.+++++.++...+++++||++++|+ +++|+||||||||||+++|+|++ |..|.|.++|... .
T Consensus 3 ~~~l~~~~~~~~~l~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (227)
T cd03260 3 LRDLNVYYGDKHALKDISLDIPKGE---ITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLEL 79 (227)
T ss_pred EEEEEEEcCCceeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHH
Confidence 4678888887789999999999999 99999999999999999999997 5789999998632 1
Q ss_pred cccccccCCCCcccccchHHHHHHHHhc--CC---------------CccCcc-cccc--ccCccCCceeecCCccEEEE
Q 038045 104 SRVVDGNFDDPRLTDYDTLLENVRDLRE--GK---------------PVQVPI-YDFE--SSSRTGYRTVEVPSSRIVII 163 (621)
Q Consensus 104 ~R~Ig~vfQdp~l~d~~tV~enL~~L~~--gk---------------~V~~p~-yd~~--~~~rsggq~qrVa~ArVLIv 163 (621)
.+.++|+||++.++ ..|+.+|+..... +. .+.+.. .+.. ...+|+|++|++..+++++.
T Consensus 80 ~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~ 158 (227)
T cd03260 80 RRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALAN 158 (227)
T ss_pred HhhEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhc
Confidence 24689999999888 7899999875321 10 011111 1233 37899999999999999999
Q ss_pred ecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCc
Q 038045 164 EGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQT 241 (621)
Q Consensus 164 EG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~ 241 (621)
+|.++++|||++.||+. ....+..+.+.+.+. .|++.++|+.+... .++|++.++.+|.+...+..
T Consensus 159 ~p~llllDEPt~~LD~~-------~~~~l~~~l~~~~~~-~tii~~sH~~~~~~----~~~d~i~~l~~G~i~~~g~~ 224 (227)
T cd03260 159 EPEVLLLDEPTSALDPI-------STAKIEELIAELKKE-YTIVIVTHNMQQAA----RVADRTAFLLNGRLVEFGPT 224 (227)
T ss_pred CCCEEEEeCCCccCCHH-------HHHHHHHHHHHHhhC-cEEEEEeccHHHHH----HhCCEEEEEeCCEEEEecCc
Confidence 99999999999999973 234455555555555 89999999998876 67788888888877654443
No 102
>PTZ00301 uridine kinase; Provisional
Probab=99.88 E-value=2.4e-22 Score=200.56 Aligned_cols=178 Identities=29% Similarity=0.493 Sum_probs=150.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhhC-----CC-eeEEEECCccccccc------ccccCCCCcccccchHHHHHHHHhcC
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNFM-----PS-IAVISMDNYNDSSRV------VDGNFDDPRLTDYDTLLENVRDLREG 132 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagLl-----P~-sGvI~lDg~~~~~R~------Ig~vfQdp~l~d~~tV~enL~~L~~g 132 (621)
.++|||.||||||||||++.|+..+ |. ...+++|+|+..... -.+.|++|..||...+.+.|..++.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~l~~L~~g 82 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEHDLLTTHLRELKSG 82 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHhcCCCCCChhhhCHHHHHHHHHHHHcC
Confidence 4699999999999999999886543 33 457888999754322 13688999999999999999999999
Q ss_pred CCccCccccccccCccCCceeecCCccEEEEecceecc-ccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHh
Q 038045 133 KPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALS-EKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQ 211 (621)
Q Consensus 133 k~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLl-DEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtH 211 (621)
+.+..|.||+..+.+.. ....+.+.+++|+||.+++. +++++.+|++||++++.+.++.||+.|+..++|.+++.+.+
T Consensus 83 ~~i~~P~yd~~~~~~~~-~~~~i~p~~ViIvEGi~~l~~~~l~~l~D~~ifvd~~~d~~~~Rr~~Rd~~~rG~~~e~v~~ 161 (210)
T PTZ00301 83 KTVQIPQYDYVHHTRSD-TAVTMTPKSVLIVEGILLFTNAELRNEMDCLIFVDTPLDICLIRRAKRDMRERGRTFESVIE 161 (210)
T ss_pred CcccCCCcccccCCcCC-ceEEeCCCcEEEEechhhhCCHHHHHhCCEEEEEeCChhHHHHHHHhhhHHhcCCCHHHHHH
Confidence 99999999999887764 45677788999999999985 68889999999999999999999999999999999999999
Q ss_pred HHHHHhccccccchhhhcCCCCceeeccCceeEEecCCCCCcc
Q 038045 212 QISETSAKNLSVDQIKAVYPEGHTETMEQTYDIYLLPPGEDPE 254 (621)
Q Consensus 212 d~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIYi~P~~~~~e 254 (621)
+|.... . .++..+|+|++..||+ ++|.+..+.
T Consensus 162 ~~~~~v----~------~~~~~~I~p~k~~ADi-Ii~~~~~~~ 193 (210)
T PTZ00301 162 QYEATV----R------PMYYAYVEPSKVYADI-IVPSWKDNS 193 (210)
T ss_pred HHHHhh----c------ccHHHHcCccccCCcE-EEcCCCcch
Confidence 887754 2 4777899999999999 567776543
No 103
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=3.5e-23 Score=214.55 Aligned_cols=192 Identities=11% Similarity=0.160 Sum_probs=152.0
Q ss_pred eecceeeeeCc-----EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc--------
Q 038045 38 IQDPLSFEKGF-----FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS-------- 103 (621)
Q Consensus 38 v~~~lsf~~G~-----~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~-------- 103 (621)
..++++|.|+. ..+|+++||++++|+ +++|+||||||||||+++|+|++ |+.|.|.+||....
T Consensus 4 ~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 80 (290)
T PRK13634 4 TFQKVEHRYQYKTPFERRALYDVNVSIPSGS---YVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKL 80 (290)
T ss_pred EEEEEEEEECCCCcccccceeeEEEEEcCCC---EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchH
Confidence 46678887753 569999999999999 99999999999999999999999 89999999997421
Q ss_pred ---cccccccCCCCc--ccccchHHHHHHHHhc--C--------------CCccCc--cccccccCccCCceeecCCccE
Q 038045 104 ---SRVVDGNFDDPR--LTDYDTLLENVRDLRE--G--------------KPVQVP--IYDFESSSRTGYRTVEVPSSRI 160 (621)
Q Consensus 104 ---~R~Ig~vfQdp~--l~d~~tV~enL~~L~~--g--------------k~V~~p--~yd~~~~~rsggq~qrVa~ArV 160 (621)
++.++|+||+|. ++ ..++.+|+.+... + +.+.++ ..+.....+|+|+++++.++++
T Consensus 81 ~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAra 159 (290)
T PRK13634 81 KPLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGV 159 (290)
T ss_pred HHHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHH
Confidence 246899999984 44 4699999976321 1 012232 2345567899999999999999
Q ss_pred EEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHH-HcCCCceehHhHHHHHhccccccchhhhcCCCCceeecc
Q 038045 161 VIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQ-RVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETME 239 (621)
Q Consensus 161 LIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~-erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~ 239 (621)
++.+|.++++|||++.||+. ....+.++.+.+. +.|.|++.++|++..+. .++|++.++.+|.+...+
T Consensus 160 L~~~P~llllDEPt~~LD~~-------~~~~l~~~L~~l~~~~g~tviiitHd~~~~~----~~~drv~~l~~G~i~~~g 228 (290)
T PRK13634 160 LAMEPEVLVLDEPTAGLDPK-------GRKEMMEMFYKLHKEKGLTTVLVTHSMEDAA----RYADQIVVMHKGTVFLQG 228 (290)
T ss_pred HHcCCCEEEEECCcccCCHH-------HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH----HhCCEEEEEECCEEEEEC
Confidence 99999999999999999973 2344445455554 45999999999999887 778888899999887766
Q ss_pred CceeE
Q 038045 240 QTYDI 244 (621)
Q Consensus 240 ~~aDI 244 (621)
...++
T Consensus 229 ~~~~~ 233 (290)
T PRK13634 229 TPREI 233 (290)
T ss_pred CHHHH
Confidence 66655
No 104
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.88 E-value=8.1e-23 Score=204.44 Aligned_cols=190 Identities=13% Similarity=0.135 Sum_probs=148.6
Q ss_pred ecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhh--C-CCeeEEEECCcccc--------cccc
Q 038045 39 QDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNF--M-PSIAVISMDNYNDS--------SRVV 107 (621)
Q Consensus 39 ~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagL--l-P~sGvI~lDg~~~~--------~R~I 107 (621)
.+++++.++...+|+++||++++|+ +++|+||||||||||+++|+|+ . |..|.|.++|.... +..+
T Consensus 3 ~~~l~~~~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 79 (243)
T TIGR01978 3 IKDLHVSVEDKEILKGVNLTVKKGE---IHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGL 79 (243)
T ss_pred EeeEEEEECCEEEEeccceEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccce
Confidence 4678888888889999999999999 9999999999999999999999 3 78999999986321 1237
Q ss_pred cccCCCCcccccchHHHHHHHHhcC-C----------------------CccCc--ccccccc-CccCCceeecCCccEE
Q 038045 108 DGNFDDPRLTDYDTLLENVRDLREG-K----------------------PVQVP--IYDFESS-SRTGYRTVEVPSSRIV 161 (621)
Q Consensus 108 g~vfQdp~l~d~~tV~enL~~L~~g-k----------------------~V~~p--~yd~~~~-~rsggq~qrVa~ArVL 161 (621)
+|++|++.+++..++.+++...... . .+.++ ..+.... .+|+|+++++..++++
T Consensus 80 ~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al 159 (243)
T TIGR01978 80 FLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMA 159 (243)
T ss_pred EeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHH
Confidence 8999999999999999988653210 0 01121 1233344 4999999999999999
Q ss_pred EEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhcccccc-chhhhcCCCCceeeccC
Q 038045 162 IIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSV-DQIKAVYPEGHTETMEQ 240 (621)
Q Consensus 162 IvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~-~d~iavl~eg~Ie~~~~ 240 (621)
+.+|.++++|||++.||.. ..+.+.++.+.+.+.|.|++.++|+.+... .. +|++.++..|.+...+.
T Consensus 160 ~~~p~llllDEPt~~LD~~-------~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~----~~~~d~i~~l~~G~i~~~g~ 228 (243)
T TIGR01978 160 LLEPKLAILDEIDSGLDID-------ALKIVAEGINRLREPDRSFLIITHYQRLLN----YIKPDYVHVLLDGRIVKSGD 228 (243)
T ss_pred hcCCCEEEecCCcccCCHH-------HHHHHHHHHHHHHHCCcEEEEEEecHHHHH----hhcCCeEEEEeCCEEEEecC
Confidence 9999999999999999973 234555555666667899999999998876 55 67778888887765544
Q ss_pred ce
Q 038045 241 TY 242 (621)
Q Consensus 241 ~a 242 (621)
+.
T Consensus 229 ~~ 230 (243)
T TIGR01978 229 VE 230 (243)
T ss_pred HH
Confidence 44
No 105
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.88 E-value=7.4e-23 Score=206.24 Aligned_cols=190 Identities=15% Similarity=0.180 Sum_probs=151.8
Q ss_pred ecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CC-----eeEEEECCcccc---------
Q 038045 39 QDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PS-----IAVISMDNYNDS--------- 103 (621)
Q Consensus 39 ~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~-----sGvI~lDg~~~~--------- 103 (621)
.+++++.++...+++++||++++|+ +++|+|+||||||||+++|+|++ |. .|.|.++|....
T Consensus 4 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~ 80 (247)
T TIGR00972 4 IENLNLFYGEKEALKNINLDIPKNQ---VTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVEL 80 (247)
T ss_pred EEEEEEEECCeeeecceeEEECCCC---EEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHH
Confidence 5678888888889999999999999 99999999999999999999999 77 999999986321
Q ss_pred cccccccCCCCcccccchHHHHHHHHhc--CC---------------CccC-----ccccccccCccCCceeecCCccEE
Q 038045 104 SRVVDGNFDDPRLTDYDTLLENVRDLRE--GK---------------PVQV-----PIYDFESSSRTGYRTVEVPSSRIV 161 (621)
Q Consensus 104 ~R~Ig~vfQdp~l~d~~tV~enL~~L~~--gk---------------~V~~-----p~yd~~~~~rsggq~qrVa~ArVL 161 (621)
++.++|+||++.+++ .++.+|+..... +. .+.+ ...+.....+|+|+++++..++++
T Consensus 81 ~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral 159 (247)
T TIGR00972 81 RRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARAL 159 (247)
T ss_pred HhheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 246899999999888 999999975321 10 0111 123444678899999999999999
Q ss_pred EEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCc
Q 038045 162 IIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQT 241 (621)
Q Consensus 162 IvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~ 241 (621)
+.+|.++++|||++.||+. ....+.++.+.+.+ +.|++.++|+.+... ..+|++.++++|.+...+..
T Consensus 160 ~~~p~llllDEPt~~LD~~-------~~~~l~~~l~~~~~-~~tiiivsH~~~~~~----~~~d~i~~l~~G~i~~~~~~ 227 (247)
T TIGR00972 160 AVEPEVLLLDEPTSALDPI-------ATGKIEELIQELKK-KYTIVIVTHNMQQAA----RISDRTAFFYDGELVEYGPT 227 (247)
T ss_pred hcCCCEEEEeCCcccCCHH-------HHHHHHHHHHHHHh-cCeEEEEecCHHHHH----HhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999973 23445555555555 489999999999876 67788888998888766665
Q ss_pred eeE
Q 038045 242 YDI 244 (621)
Q Consensus 242 aDI 244 (621)
.++
T Consensus 228 ~~~ 230 (247)
T TIGR00972 228 EQI 230 (247)
T ss_pred HHH
Confidence 554
No 106
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.88 E-value=8.5e-23 Score=202.18 Aligned_cols=184 Identities=20% Similarity=0.278 Sum_probs=141.9
Q ss_pred ecceeeeeCcE----EEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc----------c
Q 038045 39 QDPLSFEKGFF----VVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND----------S 103 (621)
Q Consensus 39 ~~~lsf~~G~~----~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~----------~ 103 (621)
.+++++.++.. .+++++||++++|+ ++||+||||||||||+++|+|++ |..|.|.++|... .
T Consensus 4 ~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (228)
T cd03257 4 VKNLSVSFPTGGGSVKALDDVSFSIKKGE---TLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80 (228)
T ss_pred EEeeeEeccCCCcceeeecCceeEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHh
Confidence 46777777654 79999999999999 99999999999999999999999 8999999998632 1
Q ss_pred cccccccCCCC--cccccchHHHHHHHHh--cC--C--------------CccCc--cccccccCccCCceeecCCccEE
Q 038045 104 SRVVDGNFDDP--RLTDYDTLLENVRDLR--EG--K--------------PVQVP--IYDFESSSRTGYRTVEVPSSRIV 161 (621)
Q Consensus 104 ~R~Ig~vfQdp--~l~d~~tV~enL~~L~--~g--k--------------~V~~p--~yd~~~~~rsggq~qrVa~ArVL 161 (621)
++.++|++|++ .+++..++.+|+.... .+ . ...++ ..+.....+|+|++|++..++++
T Consensus 81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral 160 (228)
T cd03257 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARAL 160 (228)
T ss_pred hccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHH
Confidence 24689999998 4566789999986421 10 0 01111 12344577899999999999999
Q ss_pred EEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHH-cCCCceehHhHHHHHhccccccchhhhcCCCCcee
Q 038045 162 IIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQR-VGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTE 236 (621)
Q Consensus 162 IvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~e-rG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie 236 (621)
+.+|.++++|||++.||+. ..+.+.++.+.+.+ .|.|++.++|+.+... ..+|++.++.+|.+.
T Consensus 161 ~~~p~lllLDEPt~~LD~~-------~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~----~~~d~i~~l~~G~i~ 225 (228)
T cd03257 161 ALNPKLLIADEPTSALDVS-------VQAQILDLLKKLQEELGLTLLFITHDLGVVA----KIADRVAVMYAGKIV 225 (228)
T ss_pred hcCCCEEEecCCCCCCCHH-------HHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH----HhcCeEEEEeCCEEE
Confidence 9999999999999999972 23444444444444 4899999999998776 566777777777653
No 107
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.87 E-value=6.8e-23 Score=207.09 Aligned_cols=192 Identities=16% Similarity=0.190 Sum_probs=152.4
Q ss_pred ecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc---------------
Q 038045 39 QDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND--------------- 102 (621)
Q Consensus 39 ~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~--------------- 102 (621)
.+++++.++...+++++||++++|+ ++||+||||||||||+++|+|++ |..|.|.++|...
T Consensus 3 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (252)
T TIGR03005 3 FSDVTKRFGILTVLDGLNFSVAAGE---KVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADE 79 (252)
T ss_pred EEEEEEEeCCeeEEeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccch
Confidence 4678888887889999999999999 99999999999999999999999 8999999998632
Q ss_pred -----ccccccccCCCCcccccchHHHHHHHHh---cCC--------------CccC-ccccccccCccCCceeecCCcc
Q 038045 103 -----SSRVVDGNFDDPRLTDYDTLLENVRDLR---EGK--------------PVQV-PIYDFESSSRTGYRTVEVPSSR 159 (621)
Q Consensus 103 -----~~R~Ig~vfQdp~l~d~~tV~enL~~L~---~gk--------------~V~~-p~yd~~~~~rsggq~qrVa~Ar 159 (621)
.++.++|+||++.+++..++.+|+.... .+. .+.+ ...+.....+|+|+++++..++
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lar 159 (252)
T TIGR03005 80 KHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIAR 159 (252)
T ss_pred hHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHH
Confidence 1346899999999999899999997521 010 0111 1123445678999999999999
Q ss_pred EEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHH-cCCCceehHhHHHHHhccccccchhhhcCCCCceeec
Q 038045 160 IVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQR-VGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETM 238 (621)
Q Consensus 160 VLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~e-rG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~ 238 (621)
+++.+|.++++|||++.||.. ....+..+.+.+.+ .|.|++.++|+..... .++|++.++.+|.+...
T Consensus 160 al~~~p~llllDEP~~~LD~~-------~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~----~~~d~i~~l~~G~i~~~ 228 (252)
T TIGR03005 160 ALAMRPKVMLFDEVTSALDPE-------LVGEVLNVIRRLASEHDLTMLLVTHEMGFAR----EFADRVCFFDKGRIVEQ 228 (252)
T ss_pred HHHcCCCEEEEeCCcccCCHH-------HHHHHHHHHHHHHHhcCcEEEEEeCCHHHHH----HhcCEEEEEECCEEEEe
Confidence 999999999999999999973 23344444444443 5899999999998876 66788888999988766
Q ss_pred cCceeE
Q 038045 239 EQTYDI 244 (621)
Q Consensus 239 ~~~aDI 244 (621)
+...++
T Consensus 229 g~~~~~ 234 (252)
T TIGR03005 229 GKPDEI 234 (252)
T ss_pred CCHHHH
Confidence 666555
No 108
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.87 E-value=1e-22 Score=204.14 Aligned_cols=192 Identities=13% Similarity=0.125 Sum_probs=153.7
Q ss_pred eecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc--------ccccc
Q 038045 38 IQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS--------SRVVD 108 (621)
Q Consensus 38 v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~--------~R~Ig 108 (621)
..+++++.++...+++++||++++|+ ++||+||||||||||+++|+|++ |..|.|.++|.... ++.++
T Consensus 4 ~~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (242)
T TIGR03411 4 YLEGLSVSFDGFKALNDLSLYVDPGE---LRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIG 80 (242)
T ss_pred EEEeeEEEcCCeEEeeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCee
Confidence 45678888877889999999999999 99999999999999999999998 89999999996321 23589
Q ss_pred ccCCCCcccccchHHHHHHHHhcCC------------------------CccC-ccccccccCccCCceeecCCccEEEE
Q 038045 109 GNFDDPRLTDYDTLLENVRDLREGK------------------------PVQV-PIYDFESSSRTGYRTVEVPSSRIVII 163 (621)
Q Consensus 109 ~vfQdp~l~d~~tV~enL~~L~~gk------------------------~V~~-p~yd~~~~~rsggq~qrVa~ArVLIv 163 (621)
|+||++.+++..++.+|+....... .+.+ +..+.....+|+|+++++..+++++.
T Consensus 81 ~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~ 160 (242)
T TIGR03411 81 RKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQ 160 (242)
T ss_pred EeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 9999999999999999997632100 0111 11234456789999999999999999
Q ss_pred ecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCcee
Q 038045 164 EGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYD 243 (621)
Q Consensus 164 EG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aD 243 (621)
+|.++++|||++.||+. ..+.+..+.+.+.+ +.|++.++|+.+... .++|++.++.+|.+...+...+
T Consensus 161 ~p~~lllDEPt~~LD~~-------~~~~l~~~l~~~~~-~~tii~~sH~~~~~~----~~~d~i~~l~~g~~~~~~~~~~ 228 (242)
T TIGR03411 161 DPKLLLLDEPVAGMTDE-------ETEKTAELLKSLAG-KHSVVVVEHDMEFVR----SIADKVTVLHQGSVLAEGSLDQ 228 (242)
T ss_pred CCCEEEecCCccCCCHH-------HHHHHHHHHHHHhc-CCEEEEEECCHHHHH----HhCCEEEEEECCeEEeeCCHHH
Confidence 99999999999999973 23455555555544 789999999999886 6788888888888776666555
Q ss_pred E
Q 038045 244 I 244 (621)
Q Consensus 244 I 244 (621)
+
T Consensus 229 ~ 229 (242)
T TIGR03411 229 V 229 (242)
T ss_pred H
Confidence 4
No 109
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1e-22 Score=205.70 Aligned_cols=193 Identities=14% Similarity=0.145 Sum_probs=151.7
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc--------cccc
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS--------SRVV 107 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~--------~R~I 107 (621)
...+++++.++...+++++||++++|+ +++|+||||||||||+++|+|+. |..|.|.++|.... +..+
T Consensus 6 l~~~~l~~~~~~~~~l~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 6 LSVSGLMMRFGGLLAVNNVNLEVREQE---IVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred EEEeeEEEEECCEEEEEeeeeEEcCCe---EEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence 456788888888899999999999999 99999999999999999999998 89999999997421 1247
Q ss_pred cccCCCCcccccchHHHHHHHHhcC------------------C-------------CccC-ccccccccCccCCceeec
Q 038045 108 DGNFDDPRLTDYDTLLENVRDLREG------------------K-------------PVQV-PIYDFESSSRTGYRTVEV 155 (621)
Q Consensus 108 g~vfQdp~l~d~~tV~enL~~L~~g------------------k-------------~V~~-p~yd~~~~~rsggq~qrV 155 (621)
+|+||++.+++.+++.+|+...... . .+.+ ...+.....+|+|+++++
T Consensus 83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv 162 (255)
T PRK11300 83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRL 162 (255)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHH
Confidence 7899999999999999998863210 0 0011 112334567899999999
Q ss_pred CCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHH-cCCCceehHhHHHHHhccccccchhhhcCCCCc
Q 038045 156 PSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQR-VGQEPEEIIQQISETSAKNLSVDQIKAVYPEGH 234 (621)
Q Consensus 156 a~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~e-rG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~ 234 (621)
..+++++.+|.++++|||++.||+. ..+.+.++.+.+.+ .|.|++.++|+.+... .++|++.++.+|.
T Consensus 163 ~la~al~~~p~llllDEPt~~LD~~-------~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~----~~~d~i~~l~~g~ 231 (255)
T PRK11300 163 EIARCMVTQPEILMLDEPAAGLNPK-------ETKELDELIAELRNEHNVTVLLIEHDMKLVM----GISDRIYVVNQGT 231 (255)
T ss_pred HHHHHHhcCCCEEEEcCCccCCCHH-------HHHHHHHHHHHHHhhcCCEEEEEeCCHHHHH----HhCCEEEEEECCe
Confidence 9999999999999999999999973 23444454444444 4899999999999886 6778888888887
Q ss_pred eeeccCcee
Q 038045 235 TETMEQTYD 243 (621)
Q Consensus 235 Ie~~~~~aD 243 (621)
+...+...+
T Consensus 232 i~~~~~~~~ 240 (255)
T PRK11300 232 PLANGTPEE 240 (255)
T ss_pred EEecCCHHH
Confidence 765544443
No 110
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.87 E-value=1e-22 Score=207.34 Aligned_cols=193 Identities=16% Similarity=0.167 Sum_probs=152.0
Q ss_pred eecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-------ccccccc
Q 038045 38 IQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-------SSRVVDG 109 (621)
Q Consensus 38 v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-------~~R~Ig~ 109 (621)
..+++++.++...+|+++||++++|+ ++||+|+||||||||+++|+|++ |..|.|.++|... ..+.++|
T Consensus 4 ~~~~l~~~~~~~~il~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (258)
T PRK13548 4 EARNLSVRLGGRTLLDDVSLTLRPGE---VVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAV 80 (258)
T ss_pred EEEeEEEEeCCeeeeeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEE
Confidence 46678888888889999999999999 99999999999999999999998 8999999998632 1246899
Q ss_pred cCCCCcccccchHHHHHHHHhcCC----------------CccCc-cccccccCccCCceeecCCccEEE------Eecc
Q 038045 110 NFDDPRLTDYDTLLENVRDLREGK----------------PVQVP-IYDFESSSRTGYRTVEVPSSRIVI------IEGI 166 (621)
Q Consensus 110 vfQdp~l~d~~tV~enL~~L~~gk----------------~V~~p-~yd~~~~~rsggq~qrVa~ArVLI------vEG~ 166 (621)
+||++.+++..++.+|+....... .+.+. ..+.....+|+|+++++..+++++ .+|.
T Consensus 81 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~ 160 (258)
T PRK13548 81 LPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPR 160 (258)
T ss_pred EccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCC
Confidence 999998877889999987632110 01111 134456788999999999999999 4999
Q ss_pred eeccccccCCCCeeEEecCCchHHHHHHHHHHHH-HcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 167 YALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQ-RVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 167 lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~-erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
++++|||++.||+. ..+.+..+.+.+. +.|.|++.++|+.+... ..+|++.++..|.+...+.+.++
T Consensus 161 lllLDEPt~~LD~~-------~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~----~~~d~i~~l~~G~i~~~~~~~~~ 228 (258)
T PRK13548 161 WLLLDEPTSALDLA-------HQHHVLRLARQLAHERGLAVIVVLHDLNLAA----RYADRIVLLHQGRLVADGTPAEV 228 (258)
T ss_pred EEEEeCCcccCCHH-------HHHHHHHHHHHHHHhcCCEEEEEECCHHHHH----HhcCEEEEEECCEEEeeCCHHHH
Confidence 99999999999973 2344445555554 67899999999998876 67788888888877655554443
No 111
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=1.2e-22 Score=204.83 Aligned_cols=193 Identities=16% Similarity=0.173 Sum_probs=152.8
Q ss_pred eecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-C-----CeeEEEECCccc-------cc
Q 038045 38 IQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-P-----SIAVISMDNYND-------SS 104 (621)
Q Consensus 38 v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P-----~sGvI~lDg~~~-------~~ 104 (621)
..+++++.++...+++++||++++|+ ++||+||||||||||+++|+|++ | ..|.|.++|... .+
T Consensus 5 ~~~~l~~~~~~~~~l~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 81 (250)
T PRK14247 5 EIRDLKVSFGQVEVLDGVNLEIPDNT---ITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELR 81 (250)
T ss_pred EEEeeEEEECCeeeeecceeEEcCCC---EEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHh
Confidence 46678888887889999999999999 99999999999999999999998 4 589999998632 12
Q ss_pred ccccccCCCCcccccchHHHHHHHHhc--C---C-------------CccC-----ccccccccCccCCceeecCCccEE
Q 038045 105 RVVDGNFDDPRLTDYDTLLENVRDLRE--G---K-------------PVQV-----PIYDFESSSRTGYRTVEVPSSRIV 161 (621)
Q Consensus 105 R~Ig~vfQdp~l~d~~tV~enL~~L~~--g---k-------------~V~~-----p~yd~~~~~rsggq~qrVa~ArVL 161 (621)
+.++|+||++.+++..++.+|+..... . . .+.+ ...+....++|+|+++++..++++
T Consensus 82 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral 161 (250)
T PRK14247 82 RRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARAL 161 (250)
T ss_pred ccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHH
Confidence 468999999988888999999975321 0 0 0111 113445678899999999999999
Q ss_pred EEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCc
Q 038045 162 IIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQT 241 (621)
Q Consensus 162 IvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~ 241 (621)
+.+|.++++|||++.||+. ....+.++.+.+.+ |.|++.++|+.+... ..+|++.++.+|.+...+..
T Consensus 162 ~~~p~lllLDEP~~~LD~~-------~~~~l~~~l~~~~~-~~tiii~sH~~~~~~----~~~d~i~~l~~G~i~~~g~~ 229 (250)
T PRK14247 162 AFQPEVLLADEPTANLDPE-------NTAKIESLFLELKK-DMTIVLVTHFPQQAA----RISDYVAFLYKGQIVEWGPT 229 (250)
T ss_pred hcCCCEEEEcCCCccCCHH-------HHHHHHHHHHHHhc-CCEEEEEeCCHHHHH----HhcCEEEEEECCeEEEECCH
Confidence 9999999999999999973 23444455555543 789999999998876 66788888888888766666
Q ss_pred eeEE
Q 038045 242 YDIY 245 (621)
Q Consensus 242 aDIY 245 (621)
.+++
T Consensus 230 ~~~~ 233 (250)
T PRK14247 230 REVF 233 (250)
T ss_pred HHHH
Confidence 6653
No 112
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=8e-23 Score=207.67 Aligned_cols=193 Identities=15% Similarity=0.187 Sum_probs=154.0
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-C-----CeeEEEECCccc--------
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-P-----SIAVISMDNYND-------- 102 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P-----~sGvI~lDg~~~-------- 102 (621)
...+++++.++...+|+++||++.+|+ ++||+|+||||||||+++|+|+. | ..|.|.++|...
T Consensus 13 l~~~~l~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 89 (258)
T PRK14268 13 IKVENLNLWYGEKQALKNVSMQIPKNS---VTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVV 89 (258)
T ss_pred EEEeeeEEEeCCeeeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHH
Confidence 456788888888889999999999999 99999999999999999999998 4 699999998632
Q ss_pred -ccccccccCCCCcccccchHHHHHHHHhc--CC--------------CccC-----ccccccccCccCCceeecCCccE
Q 038045 103 -SSRVVDGNFDDPRLTDYDTLLENVRDLRE--GK--------------PVQV-----PIYDFESSSRTGYRTVEVPSSRI 160 (621)
Q Consensus 103 -~~R~Ig~vfQdp~l~d~~tV~enL~~L~~--gk--------------~V~~-----p~yd~~~~~rsggq~qrVa~ArV 160 (621)
..+.++|+||++.+++ .++.+|+.+... +. .+.. ...+.....+|+|+++++..+++
T Consensus 90 ~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lara 168 (258)
T PRK14268 90 ELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIART 168 (258)
T ss_pred HHhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHH
Confidence 1245899999998888 899999975321 10 0111 11234456789999999999999
Q ss_pred EEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccC
Q 038045 161 VIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQ 240 (621)
Q Consensus 161 LIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~ 240 (621)
++.+|.++++|||++.||.. ..+.+.++.+.+.+ |.|++.++|+.+... .++|++.+++.|.+...+.
T Consensus 169 l~~~p~llllDEPt~~LD~~-------~~~~l~~~l~~l~~-~~tiiivsH~~~~~~----~~~d~i~~l~~G~i~~~~~ 236 (258)
T PRK14268 169 LAVKPKIILFDEPTSALDPI-------STARIEDLIMNLKK-DYTIVIVTHNMQQAA----RISDYTGFFLMGELIEFGQ 236 (258)
T ss_pred HHcCCCEEEEeCCCcccCHH-------HHHHHHHHHHHHhh-CCEEEEEECCHHHHH----HhCCEEEEEECCEEEEeCC
Confidence 99999999999999999973 23445555555544 789999999998886 6788888999998877777
Q ss_pred ceeEE
Q 038045 241 TYDIY 245 (621)
Q Consensus 241 ~aDIY 245 (621)
+.+++
T Consensus 237 ~~~~~ 241 (258)
T PRK14268 237 TRQIF 241 (258)
T ss_pred HHHHh
Confidence 76664
No 113
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=5.5e-23 Score=212.66 Aligned_cols=193 Identities=15% Similarity=0.183 Sum_probs=152.3
Q ss_pred eecceeeeeCc-----EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc--------
Q 038045 38 IQDPLSFEKGF-----FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS-------- 103 (621)
Q Consensus 38 v~~~lsf~~G~-----~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~-------- 103 (621)
..+++++.++. +.+++++||++++|+ ++||+||||||||||+++|+|++ |+.|.|.+||....
T Consensus 4 ~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge---~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 80 (287)
T PRK13641 4 KFENVDYIYSPGTPMEKKGLDNISFELEEGS---FVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNL 80 (287)
T ss_pred EEEEEEEEcCCCCCccccceeeeEEEEeCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchH
Confidence 46678888763 469999999999999 99999999999999999999999 89999999997321
Q ss_pred ---cccccccCCCCc-ccccchHHHHHHHHhc--C--------------CCccCc--cccccccCccCCceeecCCccEE
Q 038045 104 ---SRVVDGNFDDPR-LTDYDTLLENVRDLRE--G--------------KPVQVP--IYDFESSSRTGYRTVEVPSSRIV 161 (621)
Q Consensus 104 ---~R~Ig~vfQdp~-l~d~~tV~enL~~L~~--g--------------k~V~~p--~yd~~~~~rsggq~qrVa~ArVL 161 (621)
++.++|+||++. .+...++.+|+.+... + ..+.+. ..+.....+|+|++|++..++++
T Consensus 81 ~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral 160 (287)
T PRK13641 81 KKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVM 160 (287)
T ss_pred HHHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHH
Confidence 235899999974 2335799999975321 1 011221 23455678999999999999999
Q ss_pred EEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCc
Q 038045 162 IIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQT 241 (621)
Q Consensus 162 IvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~ 241 (621)
+.+|.++++|||++.||+. ..+.+.++.+.+.+.|.|++.++|+++.+. .++|++.++++|.+...++.
T Consensus 161 ~~~p~lLlLDEPt~gLD~~-------~~~~l~~~l~~l~~~g~tvlivsH~~~~~~----~~~d~v~~l~~G~i~~~g~~ 229 (287)
T PRK13641 161 AYEPEILCLDEPAAGLDPE-------GRKEMMQLFKDYQKAGHTVILVTHNMDDVA----EYADDVLVLEHGKLIKHASP 229 (287)
T ss_pred HcCCCEEEEECCCCCCCHH-------HHHHHHHHHHHHHhCCCEEEEEeCCHHHHH----HhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999973 334555666666667999999999999887 77888888998887766555
Q ss_pred eeE
Q 038045 242 YDI 244 (621)
Q Consensus 242 aDI 244 (621)
.++
T Consensus 230 ~~~ 232 (287)
T PRK13641 230 KEI 232 (287)
T ss_pred HHH
Confidence 544
No 114
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1e-22 Score=207.39 Aligned_cols=186 Identities=18% Similarity=0.156 Sum_probs=146.4
Q ss_pred eecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc--ccccccccCCCC
Q 038045 38 IQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND--SSRVVDGNFDDP 114 (621)
Q Consensus 38 v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~--~~R~Ig~vfQdp 114 (621)
..+++++.++...+++++||++++|+ ++||+||||||||||+++|+|++ |..|.|.++|... ....++|+||++
T Consensus 3 ~~~~l~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~ 79 (255)
T PRK11248 3 QISHLYADYGGKPALEDINLTLESGE---LLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNE 79 (255)
T ss_pred EEEEEEEEeCCeeeEeeeeEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCC
Confidence 35678888887889999999999999 99999999999999999999999 8999999998642 223589999999
Q ss_pred cccccchHHHHHHHHhc--CC--------------CccCc-cccccccCccCCceeecCCccEEEEecceeccccccCCC
Q 038045 115 RLTDYDTLLENVRDLRE--GK--------------PVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLL 177 (621)
Q Consensus 115 ~l~d~~tV~enL~~L~~--gk--------------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~L 177 (621)
.+++..++.+|+..... +. .+.+. ..+.....+|+|+++++..+++++.+|.++++|||++.|
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~L 159 (255)
T PRK11248 80 GLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGAL 159 (255)
T ss_pred ccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 99988999999975321 10 01111 123446788999999999999999999999999999999
Q ss_pred CeeEEecCCchHHHHHHHHHHH-HHcCCCceehHhHHHHHhccccccchhhhcCC--CCceee
Q 038045 178 DLRVSVTGGVHFDLVKRVLRDI-QRVGQEPEEIIQQISETSAKNLSVDQIKAVYP--EGHTET 237 (621)
Q Consensus 178 DlkV~Vd~~~d~~LirRI~Rdl-~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~--eg~Ie~ 237 (621)
|+. ..+.+..+.+.+ ++.|.|++.++|+.+... .++|++.++. .|.+..
T Consensus 160 D~~-------~~~~l~~~L~~~~~~~g~tviivsH~~~~~~----~~~d~i~~l~~~~G~i~~ 211 (255)
T PRK11248 160 DAF-------TREQMQTLLLKLWQETGKQVLLITHDIEEAV----FMATELVLLSPGPGRVVE 211 (255)
T ss_pred CHH-------HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH----HhCCEEEEEeCCCcEEEE
Confidence 973 234444444444 445899999999998876 6677777776 365544
No 115
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1.2e-22 Score=205.82 Aligned_cols=194 Identities=15% Similarity=0.190 Sum_probs=153.9
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-------cccccc
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-------SSRVVD 108 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-------~~R~Ig 108 (621)
...+++++.++...+|+++||++++|+ +++|+|+||||||||+++|+|++ |..|.|.++|... ..+.++
T Consensus 3 l~~~~l~~~~~~~~il~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYGTKRILNDLSLSLPTGK---ITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEECCEEEEeeeeeEEcCCc---EEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 346788888888899999999999999 99999999999999999999998 8999999998632 124589
Q ss_pred ccCCCCcccccchHHHHHHHHhc------C---C-----------CccCc-cccccccCccCCceeecCCccEEEEecce
Q 038045 109 GNFDDPRLTDYDTLLENVRDLRE------G---K-----------PVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIY 167 (621)
Q Consensus 109 ~vfQdp~l~d~~tV~enL~~L~~------g---k-----------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~l 167 (621)
|+||++.+++..++.+|+.+... + . .+.+. ..+.....+|+|+++++..+++++.+|.+
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 159 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPV 159 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999988888899999875210 0 0 01111 12444678899999999999999999999
Q ss_pred eccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 168 ALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 168 LLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
+++|||++.||+. ..+.+..+.+.+.+.|.|++.++|+++... .++|++.++.+|.+...+...++
T Consensus 160 lllDEP~~~LD~~-------~~~~l~~~l~~l~~~~~tiii~tH~~~~~~----~~~d~i~~l~~G~i~~~~~~~~~ 225 (255)
T PRK11231 160 VLLDEPTTYLDIN-------HQVELMRLMRELNTQGKTVVTVLHDLNQAS----RYCDHLVVLANGHVMAQGTPEEV 225 (255)
T ss_pred EEEcCCcccCCHH-------HHHHHHHHHHHHHHCCCEEEEEECCHHHHH----HhcCEEEEEECCeEEEEcCHHHh
Confidence 9999999999973 234555555555556899999999999876 67788888888887665555444
No 116
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=1e-22 Score=200.20 Aligned_cols=182 Identities=18% Similarity=0.134 Sum_probs=143.9
Q ss_pred ecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc------cccccccC
Q 038045 39 QDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS------SRVVDGNF 111 (621)
Q Consensus 39 ~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~------~R~Ig~vf 111 (621)
.++++|.++...+++++||++++| +++|+||||||||||+++|+|++ |..|.|.++|.... .+.++|++
T Consensus 3 ~~~~~~~~~~~~~l~~vs~~i~~g----~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 78 (211)
T cd03264 3 LENLTKRYGKKRALDGVSLTLGPG----MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLP 78 (211)
T ss_pred EEEEEEEECCEEEEcceeEEEcCC----cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEec
Confidence 457888888788999999999985 59999999999999999999998 89999999986321 34689999
Q ss_pred CCCcccccchHHHHHHHHhc--C---C-----------CccCc-cccccccCccCCceeecCCccEEEEecceecccccc
Q 038045 112 DDPRLTDYDTLLENVRDLRE--G---K-----------PVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLR 174 (621)
Q Consensus 112 Qdp~l~d~~tV~enL~~L~~--g---k-----------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~ 174 (621)
|++.+|+..++.+|+.+... + . .+.+. .++.....+|+|+++++..+++++.+|.++++|||+
T Consensus 79 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt 158 (211)
T cd03264 79 QEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPT 158 (211)
T ss_pred CCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 99999998999999875321 1 0 01111 234456789999999999999999999999999999
Q ss_pred CCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCcee
Q 038045 175 PLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTE 236 (621)
Q Consensus 175 s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie 236 (621)
..||+. ..+.+.++.+.+.+ +.|++.++|+.+... ..+|++.++++|.+.
T Consensus 159 ~~LD~~-------~~~~l~~~l~~~~~-~~tii~vsH~~~~~~----~~~d~i~~l~~g~i~ 208 (211)
T cd03264 159 AGLDPE-------ERIRFRNLLSELGE-DRIVILSTHIVEDVE----SLCNQVAVLNKGKLV 208 (211)
T ss_pred ccCCHH-------HHHHHHHHHHHHhC-CCEEEEEcCCHHHHH----HhCCEEEEEECCEEE
Confidence 999973 23455555555554 589999999998876 556677777776553
No 117
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.87 E-value=9e-23 Score=199.32 Aligned_cols=167 Identities=16% Similarity=0.140 Sum_probs=134.6
Q ss_pred cceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-----------ccccc
Q 038045 40 DPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-----------SSRVV 107 (621)
Q Consensus 40 ~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-----------~~R~I 107 (621)
+++++.++...+++++||++++|+ ++||+||||||||||+++|+|++ |..|.|.++|... ..+.+
T Consensus 2 ~~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 78 (206)
T TIGR03608 2 KNISKKFGDKIILDDLNLTIEKGK---MYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKL 78 (206)
T ss_pred cceEEEECCEEEEeceEEEEeCCc---EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCe
Confidence 567788887889999999999999 99999999999999999999999 8999999998641 12468
Q ss_pred cccCCCCcccccchHHHHHHHHhcCC----------------CccCc-cccccccCccCCceeecCCccEEEEecceecc
Q 038045 108 DGNFDDPRLTDYDTLLENVRDLREGK----------------PVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYALS 170 (621)
Q Consensus 108 g~vfQdp~l~d~~tV~enL~~L~~gk----------------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLl 170 (621)
+|++|++.+++..++.+|+.+..... .+.+. ..+.....+|+|+++++..+++++.+|.++++
T Consensus 79 ~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llll 158 (206)
T TIGR03608 79 GYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILA 158 (206)
T ss_pred eEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999999999999999997632110 01111 12344578899999999999999999999999
Q ss_pred ccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHH
Q 038045 171 EKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISET 216 (621)
Q Consensus 171 DEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea 216 (621)
|||++.||. ...+.+.++.+.+.+.|.|++.++|+.+..
T Consensus 159 DEPt~~LD~-------~~~~~l~~~l~~~~~~~~tii~~sh~~~~~ 197 (206)
T TIGR03608 159 DEPTGSLDP-------KNRDEVLDLLLELNDEGKTIIIVTHDPEVA 197 (206)
T ss_pred eCCcCCCCH-------HHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 999999996 234455555555555689999999998643
No 118
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.87 E-value=1.5e-22 Score=200.80 Aligned_cols=188 Identities=18% Similarity=0.164 Sum_probs=150.3
Q ss_pred ecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc---cccccccCCCC
Q 038045 39 QDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS---SRVVDGNFDDP 114 (621)
Q Consensus 39 ~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~---~R~Ig~vfQdp 114 (621)
.+++++.++...+++++||++.+|+ ++||+||||||||||+++|+|++ |..|.|.++|.... .+.++|+||++
T Consensus 3 l~~v~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~ 79 (223)
T TIGR03740 3 TKNLSKRFGKQTAVNNISLTVPKNS---VYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESP 79 (223)
T ss_pred EEeEEEEECCEEEEeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCC
Confidence 4567777777889999999999999 99999999999999999999998 89999999986321 24689999999
Q ss_pred cccccchHHHHHHHHhc--CC----------CccCc-cccccccCccCCceeecCCccEEEEecceeccccccCCCCeeE
Q 038045 115 RLTDYDTLLENVRDLRE--GK----------PVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRV 181 (621)
Q Consensus 115 ~l~d~~tV~enL~~L~~--gk----------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV 181 (621)
.+++..++.+|+..... +. .+.+. ..+.....+|+|+++++..+++++.+|.++++|||++.||..
T Consensus 80 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~- 158 (223)
T TIGR03740 80 PLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPI- 158 (223)
T ss_pred CccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHH-
Confidence 98888999999875321 10 01111 123445678999999999999999999999999999999973
Q ss_pred EecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccC
Q 038045 182 SVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQ 240 (621)
Q Consensus 182 ~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~ 240 (621)
..+.+.++.+.+.+.|.+++.++|+.+... .++|++.++.+|.+...+.
T Consensus 159 ------~~~~l~~~L~~~~~~~~tiii~sH~~~~~~----~~~d~i~~l~~g~i~~~~~ 207 (223)
T TIGR03740 159 ------GIQELRELIRSFPEQGITVILSSHILSEVQ----QLADHIGIISEGVLGYQGK 207 (223)
T ss_pred ------HHHHHHHHHHHHHHCCCEEEEEcCCHHHHH----HhcCEEEEEeCCEEEEecC
Confidence 334555666666666899999999998876 6778888888887765444
No 119
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=1.3e-22 Score=204.86 Aligned_cols=193 Identities=17% Similarity=0.135 Sum_probs=152.8
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CC-----eeEEEECCcccc-------
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PS-----IAVISMDNYNDS------- 103 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~-----sGvI~lDg~~~~------- 103 (621)
...+++++.++...+++++||++.+|+ ++||+||||||||||+++|+|++ |+ .|.|.++|....
T Consensus 5 l~~~~l~~~~~~~~~l~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (253)
T PRK14267 5 IETVNLRVYYGSNHVIKGVDLKIPQNG---VFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI 81 (253)
T ss_pred EEEEeEEEEeCCeeeeecceEEEcCCC---EEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence 346788888888889999999999999 99999999999999999999998 53 899999986321
Q ss_pred --cccccccCCCCcccccchHHHHHHHHh--cC---C-------------CccC-----ccccccccCccCCceeecCCc
Q 038045 104 --SRVVDGNFDDPRLTDYDTLLENVRDLR--EG---K-------------PVQV-----PIYDFESSSRTGYRTVEVPSS 158 (621)
Q Consensus 104 --~R~Ig~vfQdp~l~d~~tV~enL~~L~--~g---k-------------~V~~-----p~yd~~~~~rsggq~qrVa~A 158 (621)
++.++|+||++.+++..++.+|+.... .+ . .+.+ ...+.....+|+|+++++..+
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 161 (253)
T PRK14267 82 EVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIA 161 (253)
T ss_pred HHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHH
Confidence 246899999999999999999997532 11 0 0111 112334567899999999999
Q ss_pred cEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeec
Q 038045 159 RIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETM 238 (621)
Q Consensus 159 rVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~ 238 (621)
++++.+|.++++|||+..||+. ..+.+..+.+.+.+ +.|++.++|+.+... ..+|++.++..|.+...
T Consensus 162 ral~~~p~llllDEP~~~LD~~-------~~~~l~~~l~~~~~-~~tiii~sH~~~~~~----~~~d~i~~l~~G~i~~~ 229 (253)
T PRK14267 162 RALAMKPKILLMDEPTANIDPV-------GTAKIEELLFELKK-EYTIVLVTHSPAQAA----RVSDYVAFLYLGKLIEV 229 (253)
T ss_pred HHHhcCCCEEEEcCCCccCCHH-------HHHHHHHHHHHHhh-CCEEEEEECCHHHHH----hhCCEEEEEECCEEEEe
Confidence 9999999999999999999973 23444444444444 689999999998876 67788888999988776
Q ss_pred cCceeE
Q 038045 239 EQTYDI 244 (621)
Q Consensus 239 ~~~aDI 244 (621)
+...++
T Consensus 230 ~~~~~~ 235 (253)
T PRK14267 230 GPTRKV 235 (253)
T ss_pred CCHHHH
Confidence 666665
No 120
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.87 E-value=3.9e-23 Score=211.53 Aligned_cols=180 Identities=18% Similarity=0.174 Sum_probs=152.3
Q ss_pred ecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcc-----------cccccccccCCCCcccccch
Q 038045 54 ACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYN-----------DSSRVVDGNFDDPRLTDYDT 121 (621)
Q Consensus 54 ~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~-----------~~~R~Ig~vfQdp~l~d~~t 121 (621)
+++|.++..+ +.+|-|+||||||||+++|+|+. |+.|.|.++|.- ..+|.+|||||+..+|+++|
T Consensus 16 ~a~~~~p~~G---vTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 16 DANFTLPARG---ITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEeccCCCCc---eEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 4566776657 99999999999999999999999 999999999971 23578999999999999999
Q ss_pred HHHHHHHHhcCCC-------cc----CccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchHH
Q 038045 122 LLENVRDLREGKP-------VQ----VPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFD 190 (621)
Q Consensus 122 V~enL~~L~~gk~-------V~----~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~ 190 (621)
|+.|+.+...... +. -+..+..+..+|||++|+|++.|+++..|.++|+|||++.||. +...+
T Consensus 93 VrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~------~RK~E 166 (352)
T COG4148 93 VRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDL------PRKRE 166 (352)
T ss_pred EecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhccc------chhhH
Confidence 9999998543210 00 1345666788999999999999999999999999999999997 33445
Q ss_pred HHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEEe
Q 038045 191 LVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIYL 246 (621)
Q Consensus 191 LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIYi 246 (621)
++-.+.|...+....+.+|+|.+.|+. ..+|++.+|.+|.+...+..++++-
T Consensus 167 ilpylERL~~e~~IPIlYVSHS~~Ev~----RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 167 ILPYLERLRDEINIPILYVSHSLDEVL----RLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred HHHHHHHHHHhcCCCEEEEecCHHHHH----hhhheEEEecCCeEEecCcHHHHhc
Confidence 666777777788999999999999998 8899999999999999888887753
No 121
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.87 E-value=1.4e-22 Score=204.60 Aligned_cols=191 Identities=19% Similarity=0.205 Sum_probs=150.3
Q ss_pred eecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC------CCeeEEEECCcccc--------
Q 038045 38 IQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM------PSIAVISMDNYNDS-------- 103 (621)
Q Consensus 38 v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl------P~sGvI~lDg~~~~-------- 103 (621)
..+++++.++...+++++||++++|+ ++||+||||||||||+++|+|+. |+.|.|.++|....
T Consensus 8 ~~~~l~~~~~~~~il~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 84 (253)
T PRK14242 8 EARGLSFFYGDFQALHDISLEFEQNQ---VTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVE 84 (253)
T ss_pred EEeeeEEEECCeeeecceeEEEeCCC---EEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHH
Confidence 46788888887889999999999999 99999999999999999999985 36899999986321
Q ss_pred -cccccccCCCCcccccchHHHHHHHHhc--CC---------------CccCc-----cccccccCccCCceeecCCccE
Q 038045 104 -SRVVDGNFDDPRLTDYDTLLENVRDLRE--GK---------------PVQVP-----IYDFESSSRTGYRTVEVPSSRI 160 (621)
Q Consensus 104 -~R~Ig~vfQdp~l~d~~tV~enL~~L~~--gk---------------~V~~p-----~yd~~~~~rsggq~qrVa~ArV 160 (621)
++.++|++|++.+|+ .++.+|+.+... +. .+.+. ..+.....+|+|+++++..+++
T Consensus 85 ~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lara 163 (253)
T PRK14242 85 LRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARA 163 (253)
T ss_pred HhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHH
Confidence 246899999998887 599999976321 10 00110 1233457789999999999999
Q ss_pred EEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccC
Q 038045 161 VIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQ 240 (621)
Q Consensus 161 LIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~ 240 (621)
++.+|.++++|||++.||.. ....+.++.+.+.+ |.|++.++|+..... .++|++.++.+|.+...+.
T Consensus 164 l~~~p~llllDEPt~~LD~~-------~~~~l~~~l~~~~~-~~tvii~tH~~~~~~----~~~d~v~~l~~G~i~~~g~ 231 (253)
T PRK14242 164 LAVEPEVLLMDEPASALDPI-------ATQKIEELIHELKA-RYTIIIVTHNMQQAA----RVSDVTAFFYMGKLIEVGP 231 (253)
T ss_pred HhcCCCEEEEeCCcccCCHH-------HHHHHHHHHHHHhc-CCeEEEEEecHHHHH----HhCCEEEEEECCEEEEeCC
Confidence 99999999999999999973 23445555555544 789999999998876 6778888888888876665
Q ss_pred ceeE
Q 038045 241 TYDI 244 (621)
Q Consensus 241 ~aDI 244 (621)
..++
T Consensus 232 ~~~~ 235 (253)
T PRK14242 232 TEQI 235 (253)
T ss_pred HHHH
Confidence 5554
No 122
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.87 E-value=1.1e-22 Score=225.75 Aligned_cols=194 Identities=14% Similarity=0.096 Sum_probs=156.6
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc--------cccc
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS--------SRVV 107 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~--------~R~I 107 (621)
...+++++.++...+|+++||++++|+ ++||+||||||||||+++|+|++ |+.|.|.++|.... ++.+
T Consensus 12 l~~~~l~~~~~~~~il~~vsl~i~~Ge---~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 88 (510)
T PRK15439 12 LCARSISKQYSGVEVLKGIDFTLHAGE---VHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGI 88 (510)
T ss_pred EEEEeEEEEeCCceeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 446789998888889999999999999 99999999999999999999999 89999999986321 1358
Q ss_pred cccCCCCcccccchHHHHHHHHhcCC------------CccCc-cccccccCccCCceeecCCccEEEEecceecccccc
Q 038045 108 DGNFDDPRLTDYDTLLENVRDLREGK------------PVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLR 174 (621)
Q Consensus 108 g~vfQdp~l~d~~tV~enL~~L~~gk------------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~ 174 (621)
+|+||++.+++.+++.+|+.+..... .+.+. ..+.....+|+|++|++..+++++.+|.++++|||+
T Consensus 89 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt 168 (510)
T PRK15439 89 YLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPT 168 (510)
T ss_pred EEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 99999999999999999987632110 11121 234556789999999999999999999999999999
Q ss_pred CCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 175 PLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 175 s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
+.||+. ....+..+.+.+.+.|.+++.++|+.+.+. ..+|++.++..|.+...+.+.++
T Consensus 169 ~~LD~~-------~~~~l~~~l~~~~~~g~tiiivtHd~~~~~----~~~d~i~~l~~G~i~~~g~~~~~ 227 (510)
T PRK15439 169 ASLTPA-------ETERLFSRIRELLAQGVGIVFISHKLPEIR----QLADRISVMRDGTIALSGKTADL 227 (510)
T ss_pred CCCCHH-------HHHHHHHHHHHHHHCCCEEEEEeCCHHHHH----HhCCEEEEEECCEEEEecChHHc
Confidence 999973 234555555556667999999999998886 67788888888887655555443
No 123
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=8.8e-23 Score=210.34 Aligned_cols=192 Identities=15% Similarity=0.162 Sum_probs=150.7
Q ss_pred eecceeeeeCc---EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc-------ccc
Q 038045 38 IQDPLSFEKGF---FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS-------SRV 106 (621)
Q Consensus 38 v~~~lsf~~G~---~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~-------~R~ 106 (621)
..+++++.++. +.+|+++||++++|+ ++||+|+||||||||+++|+|++ |..|.|.+||.... ++.
T Consensus 6 ~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (279)
T PRK13650 6 EVKNLTFKYKEDQEKYTLNDVSFHVKQGE---WLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHK 82 (279)
T ss_pred EEEeEEEEcCCCCcCeeeeeeEEEEeCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhh
Confidence 45677777652 469999999999999 99999999999999999999999 99999999997421 246
Q ss_pred ccccCCCCc-ccccchHHHHHHHHhcCC----------------CccCc-cccccccCccCCceeecCCccEEEEeccee
Q 038045 107 VDGNFDDPR-LTDYDTLLENVRDLREGK----------------PVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYA 168 (621)
Q Consensus 107 Ig~vfQdp~-l~d~~tV~enL~~L~~gk----------------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lL 168 (621)
++|+||+|. .++..++.+|+.+..... .+.+. ..+..+..+|+|+++++..+++++.+|.++
T Consensus 83 i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lL 162 (279)
T PRK13650 83 IGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKII 162 (279)
T ss_pred ceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 899999984 677789999998642110 01111 234456788999999999999999999999
Q ss_pred ccccccCCCCeeEEecCCchHHHHHHHHHHHHH-cCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 169 LSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQR-VGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 169 LlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~e-rG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
++|||++.||+. ..+.+.++.+.+.+ .|.|++.++|+++... .+|++.++.+|.+...++..++
T Consensus 163 lLDEPt~~LD~~-------~~~~l~~~l~~l~~~~g~tilivtH~~~~~~-----~~dri~~l~~G~i~~~g~~~~~ 227 (279)
T PRK13650 163 ILDEATSMLDPE-------GRLELIKTIKGIRDDYQMTVISITHDLDEVA-----LSDRVLVMKNGQVESTSTPREL 227 (279)
T ss_pred EEECCcccCCHH-------HHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-----hCCEEEEEECCEEEEECCHHHH
Confidence 999999999973 23444455555444 5999999999998763 4788888988888766665554
No 124
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.87 E-value=2e-22 Score=200.26 Aligned_cols=183 Identities=16% Similarity=0.142 Sum_probs=142.2
Q ss_pred eecceeeeeCc----EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc---------
Q 038045 38 IQDPLSFEKGF----FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS--------- 103 (621)
Q Consensus 38 v~~~lsf~~G~----~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~--------- 103 (621)
..+++++.++. ..+++++||++++|+ ++||+||||||||||+++|+|++ |..|.|.++|....
T Consensus 8 ~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge---~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 84 (228)
T PRK10584 8 EVHHLKKSVGQGEHELSILTGVELVVKRGE---TIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84 (228)
T ss_pred EEeeeEEEccCCCcceEEEeccEEEEcCCC---EEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHH
Confidence 46677777754 469999999999999 99999999999999999999999 89999999986321
Q ss_pred --cccccccCCCCcccccchHHHHHHHHh--cCC--------------CccCc-cccccccCccCCceeecCCccEEEEe
Q 038045 104 --SRVVDGNFDDPRLTDYDTLLENVRDLR--EGK--------------PVQVP-IYDFESSSRTGYRTVEVPSSRIVIIE 164 (621)
Q Consensus 104 --~R~Ig~vfQdp~l~d~~tV~enL~~L~--~gk--------------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvE 164 (621)
.+.++|+||++.+++..++.+|+.+.. .+. .+.+. ..+.....+|+|+++++..+++++.+
T Consensus 85 ~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~ 164 (228)
T PRK10584 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGR 164 (228)
T ss_pred HHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 136899999999998899999987532 110 01111 12344678899999999999999999
Q ss_pred cceeccccccCCCCeeEEecCCchHHHHHHHHHHH-HHcCCCceehHhHHHHHhccccccchhhhcCCCCce
Q 038045 165 GIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDI-QRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHT 235 (621)
Q Consensus 165 G~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl-~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~I 235 (621)
|.++++|||++.||+. ..+.+..+.+.+ .+.|.|++.++|+.+... . +|++.++.+|.+
T Consensus 165 p~llllDEPt~~LD~~-------~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~----~-~d~i~~l~~g~i 224 (228)
T PRK10584 165 PDVLFADEPTGNLDRQ-------TGDKIADLLFSLNREHGTTLILVTHDLQLAA----R-CDRRLRLVNGQL 224 (228)
T ss_pred CCEEEEeCCCCCCCHH-------HHHHHHHHHHHHHHhcCCEEEEEecCHHHHH----h-CCEEEEEECCEE
Confidence 9999999999999973 234455555554 345899999999988653 3 566677776655
No 125
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=2e-22 Score=205.70 Aligned_cols=195 Identities=16% Similarity=0.092 Sum_probs=152.9
Q ss_pred eeeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-------ccccc
Q 038045 36 VPIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-------SSRVV 107 (621)
Q Consensus 36 ~~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-------~~R~I 107 (621)
....+++++.++...+++++||++.+|+ ++||+||||||||||+++|+|++ |..|.|.++|... ..+.+
T Consensus 11 ~l~i~~l~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVPGRTLLHPLSLTFPAGK---VTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEECCEEEEeeeeeEEcCCC---EEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 4567789888888899999999999999 99999999999999999999998 8999999998632 12468
Q ss_pred cccCCCCcccccchHHHHHHHHhc---C-----C------------CccCc-cccccccCccCCceeecCCccEEEEecc
Q 038045 108 DGNFDDPRLTDYDTLLENVRDLRE---G-----K------------PVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGI 166 (621)
Q Consensus 108 g~vfQdp~l~d~~tV~enL~~L~~---g-----k------------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~ 166 (621)
+|+||++.+++..++.+|+.+... . . .+.+. ..+....++|+|+++++..+++++.+|.
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~ 167 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSR 167 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 999999888888899999975211 0 0 01111 1334457889999999999999999999
Q ss_pred eeccccccCCCCeeEEecCCchHHHHHHHHHHHH-HcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 167 YALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQ-RVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 167 lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~-erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
++++|||++.||+. ..+.+.++.+.+. +.|.|++.++|+++... ..+|++.++.+|.+...+...++
T Consensus 168 lllLDEPt~~LD~~-------~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~----~~~d~i~~l~~G~i~~~~~~~~~ 235 (265)
T PRK10575 168 CLLLDEPTSALDIA-------HQVDVLALVHRLSQERGLTVIAVLHDINMAA----RYCDYLVALRGGEMIAQGTPAEL 235 (265)
T ss_pred EEEEcCCcccCCHH-------HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH----HhCCEEEEEECCeEEEecCHHHh
Confidence 99999999999973 2334444444444 34899999999998876 66777788888877655554444
No 126
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=8.7e-23 Score=196.59 Aligned_cols=163 Identities=21% Similarity=0.238 Sum_probs=134.7
Q ss_pred ecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc---------cccccc
Q 038045 39 QDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND---------SSRVVD 108 (621)
Q Consensus 39 ~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~---------~~R~Ig 108 (621)
.+++++.++...+++++||++++|+ ++||+||||||||||+++|+|++ |..|.|.++|... ..+.++
T Consensus 3 ~~~l~~~~~~~~~l~~i~~~i~~G~---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (178)
T cd03229 3 LKNVSKRYGQKTVLNDVSLNIEAGE---IVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIG 79 (178)
T ss_pred EEEEEEEECCeEEEeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEE
Confidence 4567777777889999999999999 99999999999999999999999 7899999998631 124689
Q ss_pred ccCCCCcccccchHHHHHHHHhcCCCccCccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCch
Q 038045 109 GNFDDPRLTDYDTLLENVRDLREGKPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVH 188 (621)
Q Consensus 109 ~vfQdp~l~d~~tV~enL~~L~~gk~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d 188 (621)
|++|++.+++..++.+|+... .|+|+++++..+++++.+|.++++|||+..+|.. .
T Consensus 80 ~~~q~~~~~~~~t~~~~l~~~-----------------lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~-------~ 135 (178)
T cd03229 80 MVFQDFALFPHLTVLENIALG-----------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPI-------T 135 (178)
T ss_pred EEecCCccCCCCCHHHheeec-----------------CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHH-------H
Confidence 999999988888999987642 7899999999999999999999999999999973 2
Q ss_pred HHHHHHHHHHHHHc-CCCceehHhHHHHHhccccccchhhhcCCC
Q 038045 189 FDLVKRVLRDIQRV-GQEPEEIIQQISETSAKNLSVDQIKAVYPE 232 (621)
Q Consensus 189 ~~LirRI~Rdl~er-G~Ti~~VtHd~eea~~R~v~~~d~iavl~e 232 (621)
...+..+.+.+.+. |.|++.++|+.+... .++|++.++.+
T Consensus 136 ~~~l~~~l~~~~~~~~~tiii~sH~~~~~~----~~~d~i~~l~~ 176 (178)
T cd03229 136 RREVRALLKSLQAQLGITVVLVTHDLDEAA----RLADRVVVLRD 176 (178)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHH----HhcCEEEEEeC
Confidence 34555555555555 899999999988775 44555555543
No 127
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=1.3e-22 Score=205.35 Aligned_cols=196 Identities=16% Similarity=0.194 Sum_probs=154.6
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-C-----CeeEEEECCccc--------
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-P-----SIAVISMDNYND-------- 102 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P-----~sGvI~lDg~~~-------- 102 (621)
...+++++.++...+++++||++++|+ +++|+|+||||||||+++|+|++ | ..|.|.++|...
T Consensus 8 l~~~~l~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 8 IETENLNLFYTDFKALNNINIKILKNS---ITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred EEEeeeEEEeCCceeecceeeEEcCCC---EEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 457788888887889999999999999 99999999999999999999998 5 389999998631
Q ss_pred -ccccccccCCCCcccccchHHHHHHHHhc--CC---------------CccC-----ccccccccCccCCceeecCCcc
Q 038045 103 -SSRVVDGNFDDPRLTDYDTLLENVRDLRE--GK---------------PVQV-----PIYDFESSSRTGYRTVEVPSSR 159 (621)
Q Consensus 103 -~~R~Ig~vfQdp~l~d~~tV~enL~~L~~--gk---------------~V~~-----p~yd~~~~~rsggq~qrVa~Ar 159 (621)
.++.++|++|++.+++ .++.+|+.+... +. .+.+ ..++.....+|+|+++++..++
T Consensus 85 ~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~lar 163 (254)
T PRK14273 85 ELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIAR 163 (254)
T ss_pred HHhhceEEEeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHH
Confidence 1346899999998885 899999976321 10 0011 1234556789999999999999
Q ss_pred EEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeecc
Q 038045 160 IVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETME 239 (621)
Q Consensus 160 VLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~ 239 (621)
+++.+|.++++|||++.||.. ..+.+..+.+.+. .+.|++.++|+...+. .++|++.++.+|.+...+
T Consensus 164 al~~~p~lllLDEPt~~LD~~-------~~~~l~~~l~~~~-~~~tvii~sH~~~~~~----~~~d~i~~l~~G~i~~~g 231 (254)
T PRK14273 164 TLAIEPNVILMDEPTSALDPI-------STGKIEELIINLK-ESYTIIIVTHNMQQAG----RISDRTAFFLNGCIEEES 231 (254)
T ss_pred HHHcCCCEEEEeCCCcccCHH-------HHHHHHHHHHHHh-cCCEEEEEeCCHHHHH----HhCCEEEEEECCEEEEeC
Confidence 999999999999999999973 2344445555554 3789999999999876 678888889999887777
Q ss_pred CceeEEecC
Q 038045 240 QTYDIYLLP 248 (621)
Q Consensus 240 ~~aDIYi~P 248 (621)
...+++-.|
T Consensus 232 ~~~~~~~~~ 240 (254)
T PRK14273 232 STDELFFNP 240 (254)
T ss_pred CHHHHHhCC
Confidence 776664333
No 128
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=1.7e-22 Score=198.62 Aligned_cols=182 Identities=18% Similarity=0.190 Sum_probs=141.9
Q ss_pred ecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-----ccccccccCC
Q 038045 39 QDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-----SSRVVDGNFD 112 (621)
Q Consensus 39 ~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-----~~R~Ig~vfQ 112 (621)
.+++++.++... .++||++.+|+ +++|+||||||||||+++|+|++ |..|.|.++|... .++.++|+||
T Consensus 3 ~~~l~~~~~~~~--~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 77 (211)
T cd03298 3 LDKIRFSYGEQP--MHFDLTFAQGE---ITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQ 77 (211)
T ss_pred EEeEEEEeCCEe--cceEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEec
Confidence 456777776554 39999999999 99999999999999999999999 8999999998632 2356899999
Q ss_pred CCcccccchHHHHHHHHhc-C-C--------------CccC-ccccccccCccCCceeecCCccEEEEecceeccccccC
Q 038045 113 DPRLTDYDTLLENVRDLRE-G-K--------------PVQV-PIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRP 175 (621)
Q Consensus 113 dp~l~d~~tV~enL~~L~~-g-k--------------~V~~-p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s 175 (621)
++.+++..++.+|+.+... . . .+.+ +..+.....+|+|+++++..+++++.+|.++++|||++
T Consensus 78 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~ 157 (211)
T cd03298 78 ENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFA 157 (211)
T ss_pred ccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999999999999975321 0 0 0011 11334457889999999999999999999999999999
Q ss_pred CCCeeEEecCCchHHHHHHHHHHH-HHcCCCceehHhHHHHHhccccccchhhhcCCCCcee
Q 038045 176 LLDLRVSVTGGVHFDLVKRVLRDI-QRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTE 236 (621)
Q Consensus 176 ~LDlkV~Vd~~~d~~LirRI~Rdl-~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie 236 (621)
.||.. ....+.++.+.+ ++.|.|++.++|+++... .++|++.++.+|.+.
T Consensus 158 ~LD~~-------~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~----~~~d~i~~l~~G~i~ 208 (211)
T cd03298 158 ALDPA-------LRAEMLDLVLDLHAETKMTVLMVTHQPEDAK----RLAQRVVFLDNGRIA 208 (211)
T ss_pred cCCHH-------HHHHHHHHHHHHHHhcCCEEEEEecCHHHHH----hhhCEEEEEECCEEe
Confidence 99973 233444444444 345999999999999886 566777777776653
No 129
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.87 E-value=1.6e-22 Score=205.73 Aligned_cols=193 Identities=18% Similarity=0.168 Sum_probs=153.1
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CC---eeEEEECCcccc---------
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PS---IAVISMDNYNDS--------- 103 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~---sGvI~lDg~~~~--------- 103 (621)
...+++++.++...+++++||++.+|+ +++|+||||||||||+++|+|++ |+ +|.|.++|....
T Consensus 5 l~~~nl~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 5 IRVEKLAKTFNQHQALHAVDLNIHHGE---MVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred EEEeeEEEEeCCeEEEecceEEEcCCc---EEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence 346788888888899999999999999 99999999999999999999998 64 499999996321
Q ss_pred ---cccccccCCCCcccccchHHHHHHHHhcC-------------C-----------CccC-ccccccccCccCCceeec
Q 038045 104 ---SRVVDGNFDDPRLTDYDTLLENVRDLREG-------------K-----------PVQV-PIYDFESSSRTGYRTVEV 155 (621)
Q Consensus 104 ---~R~Ig~vfQdp~l~d~~tV~enL~~L~~g-------------k-----------~V~~-p~yd~~~~~rsggq~qrV 155 (621)
.+.++|+||++.+++.+++.+|+...... . .+.+ ...+.....+|+|+++++
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 161 (262)
T PRK09984 82 RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRV 161 (262)
T ss_pred HHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHH
Confidence 23589999999999989999999753210 0 0111 123445678899999999
Q ss_pred CCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHH-HcCCCceehHhHHHHHhccccccchhhhcCCCCc
Q 038045 156 PSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQ-RVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGH 234 (621)
Q Consensus 156 a~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~-erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~ 234 (621)
..+++++.+|.++++|||++.||.. ..+.+.++.+.+. +.|.|++.++|+.+... .++|++.+++.|.
T Consensus 162 ~laral~~~p~llllDEPt~~LD~~-------~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~----~~~d~i~~l~~g~ 230 (262)
T PRK09984 162 AIARALMQQAKVILADEPIASLDPE-------SARIVMDTLRDINQNDGITVVVTLHQVDYAL----RYCERIVALRQGH 230 (262)
T ss_pred HHHHHHhcCCCEEEecCccccCCHH-------HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH----HhCCEEEEEECCE
Confidence 9999999999999999999999973 2344455555554 45899999999998876 6778888888888
Q ss_pred eeeccCcee
Q 038045 235 TETMEQTYD 243 (621)
Q Consensus 235 Ie~~~~~aD 243 (621)
+...+++.+
T Consensus 231 i~~~g~~~~ 239 (262)
T PRK09984 231 VFYDGSSQQ 239 (262)
T ss_pred EEEeCCHHH
Confidence 876666655
No 130
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=2.8e-22 Score=195.49 Aligned_cols=173 Identities=15% Similarity=0.021 Sum_probs=139.0
Q ss_pred eecceeeeeCc----EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC---CCeeEEEECCccc---ccccc
Q 038045 38 IQDPLSFEKGF----FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM---PSIAVISMDNYND---SSRVV 107 (621)
Q Consensus 38 v~~~lsf~~G~----~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl---P~sGvI~lDg~~~---~~R~I 107 (621)
..++++|.++. ..+++++||++++|+ +++|+||||||||||+++|+|+. |..|.|.+||... ..+.+
T Consensus 5 ~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i 81 (192)
T cd03232 5 TWKNLNYTVPVKGGKRQLLNNISGYVKPGT---LTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRST 81 (192)
T ss_pred EEeeeEEEecCCCCceEeEEccEEEEeCCc---EEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhce
Confidence 35667777653 679999999999999 99999999999999999999974 6899999998642 23568
Q ss_pred cccCCCCcccccchHHHHHHHHhcCCCccCccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCc
Q 038045 108 DGNFDDPRLTDYDTLLENVRDLREGKPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGV 187 (621)
Q Consensus 108 g~vfQdp~l~d~~tV~enL~~L~~gk~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~ 187 (621)
+|++|++.+++..++.+|+.+.... ..+|+|+++++..+++++.+|.++++|||++.+|..
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~~~------------~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~------- 142 (192)
T cd03232 82 GYVEQQDVHSPNLTVREALRFSALL------------RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQ------- 142 (192)
T ss_pred EEecccCccccCCcHHHHHHHHHHH------------hcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHH-------
Confidence 9999999999999999999863211 178999999999999999999999999999999973
Q ss_pred hHHHHHHHHHHHHHcCCCceehHhHHHH-HhccccccchhhhcCCC-Ccee
Q 038045 188 HFDLVKRVLRDIQRVGQEPEEIIQQISE-TSAKNLSVDQIKAVYPE-GHTE 236 (621)
Q Consensus 188 d~~LirRI~Rdl~erG~Ti~~VtHd~ee-a~~R~v~~~d~iavl~e-g~Ie 236 (621)
..+.+..+.+.+.+.|.|++.++|+.+. .. ..+|++.++.+ +.+.
T Consensus 143 ~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~----~~~d~i~~l~~~g~i~ 189 (192)
T cd03232 143 AAYNIVRFLKKLADSGQAILCTIHQPSASIF----EKFDRLLLLKRGGKTV 189 (192)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEEcCChHHHH----hhCCEEEEEcCCCeEE
Confidence 2345555555566678999999999873 33 44566666665 5543
No 131
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=8.2e-23 Score=215.22 Aligned_cols=194 Identities=16% Similarity=0.154 Sum_probs=153.9
Q ss_pred eeecceeeeeCc-----EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc--------
Q 038045 37 PIQDPLSFEKGF-----FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-------- 102 (621)
Q Consensus 37 ~v~~~lsf~~G~-----~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-------- 102 (621)
...++++|.|+. ..+|+++||++++|+ ++||+|+||||||||+++|+|++ |..|.|.++|...
T Consensus 22 l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge---~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~ 98 (320)
T PRK13631 22 LRVKNLYCVFDEKQENELVALNNISYTFEKNK---IYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHE 98 (320)
T ss_pred EEEEeEEEEeCCCCcccccceeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccc
Confidence 457788888753 369999999999999 99999999999999999999999 8999999998531
Q ss_pred ---------------ccccccccCCCCc--ccccchHHHHHHHHhc--C--------------CCccCc--cccccccCc
Q 038045 103 ---------------SSRVVDGNFDDPR--LTDYDTLLENVRDLRE--G--------------KPVQVP--IYDFESSSR 147 (621)
Q Consensus 103 ---------------~~R~Ig~vfQdp~--l~d~~tV~enL~~L~~--g--------------k~V~~p--~yd~~~~~r 147 (621)
.++.++|+||+|. +|+ .++.+|+.+... + ..+.++ ..+.....+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~L 177 (320)
T PRK13631 99 LITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGL 177 (320)
T ss_pred ccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccC
Confidence 1246899999984 555 599999875321 1 011222 234456788
Q ss_pred cCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhh
Q 038045 148 TGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIK 227 (621)
Q Consensus 148 sggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~i 227 (621)
|+|++|+++++++++.+|.++++|||++.||+. ..+.+..+.+.+.+.|.|++.++|+++.+. ..+|++
T Consensus 178 SgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~-------~~~~l~~~L~~l~~~g~TiiivtHd~~~~~----~~adri 246 (320)
T PRK13631 178 SGGQKRRVAIAGILAIQPEILIFDEPTAGLDPK-------GEHEMMQLILDAKANNKTVFVITHTMEHVL----EVADEV 246 (320)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCccCCCHH-------HHHHHHHHHHHHHHCCCEEEEEecCHHHHH----HhCCEE
Confidence 999999999999999999999999999999973 234555555555567999999999999876 678888
Q ss_pred hcCCCCceeeccCceeEE
Q 038045 228 AVYPEGHTETMEQTYDIY 245 (621)
Q Consensus 228 avl~eg~Ie~~~~~aDIY 245 (621)
.++.+|.+...++..+++
T Consensus 247 ~vl~~G~i~~~g~~~~~~ 264 (320)
T PRK13631 247 IVMDKGKILKTGTPYEIF 264 (320)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999988777776653
No 132
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.87 E-value=3.2e-22 Score=193.28 Aligned_cols=163 Identities=18% Similarity=0.186 Sum_probs=134.0
Q ss_pred eecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc--------cccccc
Q 038045 38 IQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND--------SSRVVD 108 (621)
Q Consensus 38 v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~--------~~R~Ig 108 (621)
..+++++.+ ++++++|++++|+ +++|+||||||||||+++|+|++ |..|.|.++|... .++.++
T Consensus 6 ~~~~l~~~~----~l~~vs~~i~~G~---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (182)
T cd03215 6 EVRGLSVKG----AVRDVSFEVRAGE---IVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIA 78 (182)
T ss_pred EEeccEEEe----eecceEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeE
Confidence 345666654 8999999999999 99999999999999999999999 8999999998532 134689
Q ss_pred ccCCCC---cccccchHHHHHHHHhcCCCccCccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecC
Q 038045 109 GNFDDP---RLTDYDTLLENVRDLREGKPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTG 185 (621)
Q Consensus 109 ~vfQdp---~l~d~~tV~enL~~L~~gk~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~ 185 (621)
|+||++ .+++..++.+|+..... +|+|+++++..+++++.+|.++++|||++.||+.
T Consensus 79 ~~~q~~~~~~~~~~~t~~e~l~~~~~---------------LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~----- 138 (182)
T cd03215 79 YVPEDRKREGLVLDLSVAENIALSSL---------------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVG----- 138 (182)
T ss_pred EecCCcccCcccCCCcHHHHHHHHhh---------------cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHH-----
Confidence 999985 47788899999976421 7899999999999999999999999999999973
Q ss_pred CchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCC
Q 038045 186 GVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEG 233 (621)
Q Consensus 186 ~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg 233 (621)
..+.+.++.+.+.+.|.|++.++|+..... .++|++.++.+|
T Consensus 139 --~~~~l~~~l~~~~~~~~tiii~sh~~~~~~----~~~d~v~~l~~G 180 (182)
T cd03215 139 --AKAEIYRLIRELADAGKAVLLISSELDELL----GLCDRILVMYEG 180 (182)
T ss_pred --HHHHHHHHHHHHHHCCCEEEEEeCCHHHHH----HhCCEEEEecCC
Confidence 334555556666566899999999998776 556666666655
No 133
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.87 E-value=2.3e-22 Score=222.52 Aligned_cols=192 Identities=14% Similarity=0.098 Sum_probs=153.9
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc--------ccccc
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND--------SSRVV 107 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~--------~~R~I 107 (621)
...+++++.++...+++++||++.+|+ ++||+||||||||||+++|+|++ |+.|.|.++|... .++.+
T Consensus 5 i~~~~l~~~~~~~~~l~~is~~i~~Ge---~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 5 LQLKGIDKAFPGVKALSGAALNVYPGR---VMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred EEEeeeEEEeCCeEEeeeeeEEEcCCe---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 456788888888889999999999999 99999999999999999999999 8999999998632 12468
Q ss_pred cccCCCCcccccchHHHHHHHHhc-----CC---------------CccCc-cccccccCccCCceeecCCccEEEEecc
Q 038045 108 DGNFDDPRLTDYDTLLENVRDLRE-----GK---------------PVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGI 166 (621)
Q Consensus 108 g~vfQdp~l~d~~tV~enL~~L~~-----gk---------------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~ 166 (621)
+|+||++.+++.+++.+|+.+... +. .+.+. ..+....++|+|++|++..+++++.+|.
T Consensus 82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ 161 (501)
T PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESK 161 (501)
T ss_pred EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999976321 00 01111 1244467899999999999999999999
Q ss_pred eeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCce
Q 038045 167 YALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTY 242 (621)
Q Consensus 167 lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~a 242 (621)
++++|||++.||+. ....+.++.+.+.+.|.|++.++|+.+... .++|++.++..|.+...+...
T Consensus 162 lllLDEPt~~LD~~-------~~~~l~~~l~~l~~~~~tvii~sHd~~~~~----~~~d~i~~l~~G~i~~~~~~~ 226 (501)
T PRK10762 162 VIIMDEPTDALTDT-------ETESLFRVIRELKSQGRGIVYISHRLKEIF----EICDDVTVFRDGQFIAEREVA 226 (501)
T ss_pred EEEEeCCcCCCCHH-------HHHHHHHHHHHHHHCCCEEEEEeCCHHHHH----HhCCEEEEEeCCEEEEecCcC
Confidence 99999999999973 234555555566667899999999998887 677888888888775544433
No 134
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.86 E-value=1.7e-22 Score=193.68 Aligned_cols=159 Identities=17% Similarity=0.227 Sum_probs=130.5
Q ss_pred ecceeeeeCc--EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-------cccccc
Q 038045 39 QDPLSFEKGF--FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-------SSRVVD 108 (621)
Q Consensus 39 ~~~lsf~~G~--~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-------~~R~Ig 108 (621)
.+++++.++. ..++++++|++++|+ +++|+||||||||||+++|+|++ |..|.|.++|... ..+.++
T Consensus 3 ~~~l~~~~~~~~~~~l~~~~~~i~~Ge---~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 3 VENVSFRYPGAEPPVLRNVSFSIEPGE---SLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred EEEEEEEcCCCCCcceeeeEEEECCCC---EEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 3566666653 569999999999999 99999999999999999999999 8999999998632 134689
Q ss_pred ccCCCCcccccchHHHHHHHHhcCCCccCccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCch
Q 038045 109 GNFDDPRLTDYDTLLENVRDLREGKPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVH 188 (621)
Q Consensus 109 ~vfQdp~l~d~~tV~enL~~L~~gk~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d 188 (621)
|++|++.+++ .++.+|+ +|+|+++++..+++++.+|.++++|||++.||+. .
T Consensus 80 ~~~q~~~~~~-~tv~~~l--------------------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~-------~ 131 (173)
T cd03246 80 YLPQDDELFS-GSIAENI--------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVE-------G 131 (173)
T ss_pred EECCCCcccc-CcHHHHC--------------------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHH-------H
Confidence 9999998887 4899887 7899999999999999999999999999999973 3
Q ss_pred HHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCC
Q 038045 189 FDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEG 233 (621)
Q Consensus 189 ~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg 233 (621)
...+..+.+.+.+.|.|++.++|+..... .+|++.++.+|
T Consensus 132 ~~~l~~~l~~~~~~~~tii~~sh~~~~~~-----~~d~v~~l~~G 171 (173)
T cd03246 132 ERALNQAIAALKAAGATRIVIAHRPETLA-----SADRILVLEDG 171 (173)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHH-----hCCEEEEEECC
Confidence 34555556666666999999999987542 35555555554
No 135
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.86 E-value=2.4e-22 Score=196.45 Aligned_cols=173 Identities=16% Similarity=0.076 Sum_probs=141.8
Q ss_pred eecceeeeeCc------EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC---CCeeEEEECCccc----cc
Q 038045 38 IQDPLSFEKGF------FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM---PSIAVISMDNYND----SS 104 (621)
Q Consensus 38 v~~~lsf~~G~------~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl---P~sGvI~lDg~~~----~~ 104 (621)
..++++|.++. ..+++++||++++|+ +++|+||||||||||+++|+|++ |..|.|.+||... ..
T Consensus 5 ~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge---~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~ 81 (194)
T cd03213 5 SFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGE---LTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFR 81 (194)
T ss_pred EEEeeEEEEecCCCcccccceecceEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhh
Confidence 46677777764 679999999999999 99999999999999999999987 4789999999743 24
Q ss_pred ccccccCCCCcccccchHHHHHHHHhcCCCccCccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEec
Q 038045 105 RVVDGNFDDPRLTDYDTLLENVRDLREGKPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVT 184 (621)
Q Consensus 105 R~Ig~vfQdp~l~d~~tV~enL~~L~~gk~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd 184 (621)
+.++|+||++.+++..++.+|+...... ..+|+|+++++..+++++.+|.++++|||++.||..
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~~i~~~~~~------------~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~---- 145 (194)
T cd03213 82 KIIGYVPQDDILHPTLTVRETLMFAAKL------------RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSS---- 145 (194)
T ss_pred heEEEccCcccCCCCCcHHHHHHHHHHh------------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHH----
Confidence 5689999999999999999999764311 168999999999999999999999999999999973
Q ss_pred CCchHHHHHHHHHHHHHcCCCceehHhHHH-HHhccccccchhhhcCCCCcee
Q 038045 185 GGVHFDLVKRVLRDIQRVGQEPEEIIQQIS-ETSAKNLSVDQIKAVYPEGHTE 236 (621)
Q Consensus 185 ~~~d~~LirRI~Rdl~erG~Ti~~VtHd~e-ea~~R~v~~~d~iavl~eg~Ie 236 (621)
..+.+.++.+.+.+.|.|++.++|+.. +.. .++|++.++++|.+.
T Consensus 146 ---~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~----~~~d~v~~l~~G~i~ 191 (194)
T cd03213 146 ---SALQVMSLLRRLADTGRTIICSIHQPSSEIF----ELFDKLLLLSQGRVI 191 (194)
T ss_pred ---HHHHHHHHHHHHHhCCCEEEEEecCchHHHH----HhcCEEEEEeCCEEE
Confidence 234555555555566999999999985 454 456777777777553
No 136
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.86 E-value=2.3e-22 Score=205.33 Aligned_cols=193 Identities=17% Similarity=0.167 Sum_probs=149.4
Q ss_pred eecceeeeeC---------cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-----
Q 038045 38 IQDPLSFEKG---------FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND----- 102 (621)
Q Consensus 38 v~~~lsf~~G---------~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~----- 102 (621)
..++++|.++ ...+++++||++++|+ ++||+||||||||||+++|+|++ |..|.|.++|...
T Consensus 4 ~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~ 80 (265)
T TIGR02769 4 EVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGE---TVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDR 80 (265)
T ss_pred EEEeEEEEeccCccccccCceEEeeCceeEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCH
Confidence 3466777764 4689999999999999 99999999999999999999999 8999999998632
Q ss_pred -----ccccccccCCCCc--ccccchHHHHHHHHhc---C--------------CCccCc--cccccccCccCCceeecC
Q 038045 103 -----SSRVVDGNFDDPR--LTDYDTLLENVRDLRE---G--------------KPVQVP--IYDFESSSRTGYRTVEVP 156 (621)
Q Consensus 103 -----~~R~Ig~vfQdp~--l~d~~tV~enL~~L~~---g--------------k~V~~p--~yd~~~~~rsggq~qrVa 156 (621)
.++.++|+||++. +++..++.+|+..... . +.+.+. ..+.....+|+|+++++.
T Consensus 81 ~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~ 160 (265)
T TIGR02769 81 KQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRIN 160 (265)
T ss_pred HHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHH
Confidence 1246899999973 5667899998864211 0 011121 123455778999999999
Q ss_pred CccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHH-HcCCCceehHhHHHHHhccccccchhhhcCCCCce
Q 038045 157 SSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQ-RVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHT 235 (621)
Q Consensus 157 ~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~-erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~I 235 (621)
.+++++.+|.++++|||++.||+. ..+.+.++.+.+. +.|.|++.++|+.+.+. ..+|++.++++|.+
T Consensus 161 laral~~~p~illLDEPt~~LD~~-------~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~----~~~d~i~~l~~G~i 229 (265)
T TIGR02769 161 IARALAVKPKLIVLDEAVSNLDMV-------LQAVILELLRKLQQAFGTAYLFITHDLRLVQ----SFCQRVAVMDKGQI 229 (265)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHH-------HHHHHHHHHHHHHHhcCcEEEEEeCCHHHHH----HHhcEEEEEeCCEE
Confidence 999999999999999999999973 2234444444444 45899999999998886 67788888888888
Q ss_pred eeccCceeE
Q 038045 236 ETMEQTYDI 244 (621)
Q Consensus 236 e~~~~~aDI 244 (621)
...+...++
T Consensus 230 ~~~g~~~~~ 238 (265)
T TIGR02769 230 VEECDVAQL 238 (265)
T ss_pred EEECCHHHH
Confidence 777776666
No 137
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.86 E-value=1.3e-22 Score=203.13 Aligned_cols=194 Identities=16% Similarity=0.161 Sum_probs=158.2
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc--------ccccc
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND--------SSRVV 107 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~--------~~R~I 107 (621)
.-+++++-.||..++|++|||++++|+ +++|+|+||+|||||+++|+|+. +..|.|.++|.+. .++.+
T Consensus 4 L~v~~l~~~YG~~~~L~gvsl~v~~Ge---iv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 4 LEVENLSAGYGKIQALRGVSLEVERGE---IVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred eeEEeEeecccceeEEeeeeeEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 346778888999999999999999999 99999999999999999999999 6799999999742 23468
Q ss_pred cccCCCCcccccchHHHHHHHHh---cCCCccC----------c----cccccccCccCCceeecCCccEEEEecceecc
Q 038045 108 DGNFDDPRLTDYDTLLENVRDLR---EGKPVQV----------P----IYDFESSSRTGYRTVEVPSSRIVIIEGIYALS 170 (621)
Q Consensus 108 g~vfQdp~l~d~~tV~enL~~L~---~gk~V~~----------p----~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLl 170 (621)
+|++|.-..|+.+||.|||.... ..+.... | ..+...+.+|||++|.++++|+++.+|.++++
T Consensus 81 ~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLL 160 (237)
T COG0410 81 AYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLL 160 (237)
T ss_pred EeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEe
Confidence 99999999999999999998532 2111111 2 13344578899999999999999999999999
Q ss_pred ccccCCCCeeEEecCCchHHHHHHHHHHHH-HcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 171 EKLRPLLDLRVSVTGGVHFDLVKRVLRDIQ-RVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 171 DEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~-erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
|||...|-|++ ..-+-++.+.+. +.|.|+..|.+....+. .++|+..+|..|.+.-.++.+++
T Consensus 161 DEPs~GLaP~i-------v~~I~~~i~~l~~~~g~tIlLVEQn~~~Al----~iaDr~yvle~Griv~~G~~~eL 224 (237)
T COG0410 161 DEPSEGLAPKI-------VEEIFEAIKELRKEGGMTILLVEQNARFAL----EIADRGYVLENGRIVLSGTAAEL 224 (237)
T ss_pred cCCccCcCHHH-------HHHHHHHHHHHHHcCCcEEEEEeccHHHHH----HhhCEEEEEeCCEEEEecCHHHH
Confidence 99999999875 233334444444 45889999999888887 88899999999999888777666
No 138
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2.5e-22 Score=206.67 Aligned_cols=193 Identities=15% Similarity=0.167 Sum_probs=151.4
Q ss_pred eecceeeeeC-cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc-------ccccc
Q 038045 38 IQDPLSFEKG-FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS-------SRVVD 108 (621)
Q Consensus 38 v~~~lsf~~G-~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~-------~R~Ig 108 (621)
..+++++.++ ...+++++||++++|+ ++||+|+||||||||+++|+|++ |+.|.|.++|.... .+.++
T Consensus 5 ~~~~l~~~~~~~~~~l~~vsl~i~~Ge---~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 5 ETRDLCYSYSGSKEALNNINFIAPRNS---RIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred EEEEEEEEeCCCCceeeEeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 3567888874 4569999999999999 99999999999999999999998 89999999997421 23589
Q ss_pred ccCCCCc-ccccchHHHHHHHHhc--CC--------------CccC-ccccccccCccCCceeecCCccEEEEecceecc
Q 038045 109 GNFDDPR-LTDYDTLLENVRDLRE--GK--------------PVQV-PIYDFESSSRTGYRTVEVPSSRIVIIEGIYALS 170 (621)
Q Consensus 109 ~vfQdp~-l~d~~tV~enL~~L~~--gk--------------~V~~-p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLl 170 (621)
|+||++. .+...++.+|+.+... +. .+.+ +..+.....+|+|+++++..+++++.+|.++++
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llil 161 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVL 161 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999984 2335799999975321 10 0111 223455678999999999999999999999999
Q ss_pred ccccCCCCeeEEecCCchHHHHHHHHHHHHH-cCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 171 EKLRPLLDLRVSVTGGVHFDLVKRVLRDIQR-VGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 171 DEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~e-rG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
|||++.||+. ..+.+.++.+.+.+ .|.|++.++|+++.+. .++|++.++++|.+...+++.++
T Consensus 162 DEPt~gLD~~-------~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~----~~~drv~~l~~G~i~~~g~~~~~ 225 (277)
T PRK13652 162 DEPTAGLDPQ-------GVKELIDFLNDLPETYGMTVIFSTHQLDLVP----EMADYIYVMDKGRIVAYGTVEEI 225 (277)
T ss_pred eCCcccCCHH-------HHHHHHHHHHHHHHhcCCEEEEEecCHHHHH----HhCCEEEEEECCeEEEECCHHHH
Confidence 9999999973 23455555555444 4899999999999887 67888888998888766666555
No 139
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.2e-22 Score=208.10 Aligned_cols=192 Identities=16% Similarity=0.144 Sum_probs=148.8
Q ss_pred ecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc---------cccccc
Q 038045 39 QDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND---------SSRVVD 108 (621)
Q Consensus 39 ~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~---------~~R~Ig 108 (621)
.+++++.++...+++++||++++|+ +++|+||||||||||+++|+|++ |..|.|.++|... .++.++
T Consensus 4 ~~~l~~~~~~~~il~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~ 80 (271)
T PRK13638 4 TSDLWFRYQDEPVLKGLNLDFSLSP---VTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVA 80 (271)
T ss_pred EEEEEEEcCCcccccceEEEEcCCC---EEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheE
Confidence 5678888887789999999999999 99999999999999999999999 8999999998642 124589
Q ss_pred ccCCCCcc-cccchHHHHHHHHhc--CC--------------CccCcc-ccccccCccCCceeecCCccEEEEecceecc
Q 038045 109 GNFDDPRL-TDYDTLLENVRDLRE--GK--------------PVQVPI-YDFESSSRTGYRTVEVPSSRIVIIEGIYALS 170 (621)
Q Consensus 109 ~vfQdp~l-~d~~tV~enL~~L~~--gk--------------~V~~p~-yd~~~~~rsggq~qrVa~ArVLIvEG~lLLl 170 (621)
|+||++.. +...++.+|+.+... +. .+.+.. .+.....+|+|+++++..+++++.+|.++++
T Consensus 81 ~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllL 160 (271)
T PRK13638 81 TVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLL 160 (271)
T ss_pred EEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999763 344567888765321 10 011111 2334578899999999999999999999999
Q ss_pred ccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 171 EKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 171 DEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
|||++.||+. ....+.++.+.+.+.|.|++.++|+.+... .++|++.++.+|.+...+...++
T Consensus 161 DEPt~~LD~~-------~~~~l~~~l~~~~~~g~tii~vtH~~~~~~----~~~d~i~~l~~G~i~~~g~~~~~ 223 (271)
T PRK13638 161 DEPTAGLDPA-------GRTQMIAIIRRIVAQGNHVIISSHDIDLIY----EISDAVYVLRQGQILTHGAPGEV 223 (271)
T ss_pred eCCcccCCHH-------HHHHHHHHHHHHHHCCCEEEEEeCCHHHHH----HhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999973 234444555555556899999999998876 66788888888887766555554
No 140
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2.6e-22 Score=222.37 Aligned_cols=194 Identities=15% Similarity=0.192 Sum_probs=155.1
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc--------ccccc
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND--------SSRVV 107 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~--------~~R~I 107 (621)
...+++++.++...+++++||++++|+ ++||+||||||||||+++|+|++ |+.|.|.++|... .++.+
T Consensus 6 l~~~~l~~~~~~~~il~~vs~~i~~Ge---~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 82 (510)
T PRK09700 6 ISMAGIGKSFGPVHALKSVNLTVYPGE---IHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI 82 (510)
T ss_pred EEEeeeEEEcCCeEEeeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCe
Confidence 356789998888889999999999999 99999999999999999999999 8999999998632 12458
Q ss_pred cccCCCCcccccchHHHHHHHHhc------CC-----------------CccCc-cccccccCccCCceeecCCccEEEE
Q 038045 108 DGNFDDPRLTDYDTLLENVRDLRE------GK-----------------PVQVP-IYDFESSSRTGYRTVEVPSSRIVII 163 (621)
Q Consensus 108 g~vfQdp~l~d~~tV~enL~~L~~------gk-----------------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIv 163 (621)
+|+||++.+++..++.+|+..... +. .+.+. ..+.....+|+|++|++..+++++.
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~ 162 (510)
T PRK09700 83 GIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLML 162 (510)
T ss_pred EEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhc
Confidence 999999999999999999875211 10 00111 1344467899999999999999999
Q ss_pred ecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCcee
Q 038045 164 EGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYD 243 (621)
Q Consensus 164 EG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aD 243 (621)
+|.++++|||++.||+. ....+.++.+.+.+.|.|++.++|++..+. ..+|++.++++|.+...+.+.+
T Consensus 163 ~p~lllLDEPt~~LD~~-------~~~~l~~~l~~l~~~g~tiiivsHd~~~~~----~~~d~v~~l~~G~i~~~g~~~~ 231 (510)
T PRK09700 163 DAKVIIMDEPTSSLTNK-------EVDYLFLIMNQLRKEGTAIVYISHKLAEIR----RICDRYTVMKDGSSVCSGMVSD 231 (510)
T ss_pred CCCEEEEeCCCCCCCHH-------HHHHHHHHHHHHHhCCCEEEEEeCCHHHHH----HhCCEEEEEECCEEeeecchhh
Confidence 99999999999999973 334555555556667999999999998887 6778888888887765555544
Q ss_pred E
Q 038045 244 I 244 (621)
Q Consensus 244 I 244 (621)
+
T Consensus 232 ~ 232 (510)
T PRK09700 232 V 232 (510)
T ss_pred C
Confidence 3
No 141
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.86 E-value=1.1e-22 Score=212.18 Aligned_cols=195 Identities=16% Similarity=0.250 Sum_probs=158.9
Q ss_pred CcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhCC------CeeEEEECCccc-----------ccccccc
Q 038045 47 GFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFMP------SIAVISMDNYND-----------SSRVVDG 109 (621)
Q Consensus 47 G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP------~sGvI~lDg~~~-----------~~R~Ig~ 109 (621)
|...++++|||++++|| ++||+|.|||||||+++.|.+++| ..|.|.++|... .-+.++|
T Consensus 16 g~v~av~~vs~~i~~GE---~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~m 92 (316)
T COG0444 16 GVVKAVDGVSFELKKGE---ILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAM 92 (316)
T ss_pred ccEEEEeceeEEEcCCc---EEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEE
Confidence 45789999999999999 999999999999999999999995 357899998721 1236899
Q ss_pred cCCCCc--ccccchHHHHHHHHhc--C----------------CCccCc----cccccccCccCCceeecCCccEEEEec
Q 038045 110 NFDDPR--LTDYDTLLENVRDLRE--G----------------KPVQVP----IYDFESSSRTGYRTVEVPSSRIVIIEG 165 (621)
Q Consensus 110 vfQdp~--l~d~~tV~enL~~L~~--g----------------k~V~~p----~yd~~~~~rsggq~qrVa~ArVLIvEG 165 (621)
+||+|. +.|.+++.+.+..... . +.+.+| .++..++++|||+.|||-+|-+++.+|
T Consensus 93 IfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P 172 (316)
T COG0444 93 IFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNP 172 (316)
T ss_pred EEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCC
Confidence 999985 6788888777765221 1 112233 466778999999999999999999999
Q ss_pred ceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEE
Q 038045 166 IYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIY 245 (621)
Q Consensus 166 ~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIY 245 (621)
.+++.|||+..||..+. .+.+..+.+..++.|.+++.||||+..++ .++|+++|||.|.+...+...+++
T Consensus 173 ~LlIADEPTTALDvt~Q------aqIl~Ll~~l~~e~~~aiilITHDl~vva----~~aDri~VMYaG~iVE~g~~~~i~ 242 (316)
T COG0444 173 KLLIADEPTTALDVTVQ------AQILDLLKELQREKGTALILITHDLGVVA----EIADRVAVMYAGRIVEEGPVEEIF 242 (316)
T ss_pred CEEEeCCCcchhhHHHH------HHHHHHHHHHHHhcCCEEEEEeCCHHHHH----HhcceEEEEECcEEEEeCCHHHHh
Confidence 99999999999997542 23444444445568999999999999998 899999999999999999999998
Q ss_pred ecCCCCCcc
Q 038045 246 LLPPGEDPE 254 (621)
Q Consensus 246 i~P~~~~~e 254 (621)
-.|...+..
T Consensus 243 ~~P~HPYT~ 251 (316)
T COG0444 243 KNPKHPYTR 251 (316)
T ss_pred cCCCChHHH
Confidence 777776654
No 142
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2.6e-22 Score=204.86 Aligned_cols=195 Identities=15% Similarity=0.185 Sum_probs=154.3
Q ss_pred eeeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc-------cccc
Q 038045 36 VPIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS-------SRVV 107 (621)
Q Consensus 36 ~~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~-------~R~I 107 (621)
....+++++.++...+++++||++.+|+ +++|+||||||||||+++|+|++ |..|.|.++|.... .+.+
T Consensus 7 ~l~i~~l~~~~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 7 RLRGEQLTLGYGKYTVAENLTVEIPDGH---FTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred EEEEEEEEEEECCEEEeeecceEECCCC---EEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 3457788888888889999999999999 99999999999999999999999 89999999986321 2468
Q ss_pred cccCCCCcccccchHHHHHHHHhcC---------C-----------CccC-ccccccccCccCCceeecCCccEEEEecc
Q 038045 108 DGNFDDPRLTDYDTLLENVRDLREG---------K-----------PVQV-PIYDFESSSRTGYRTVEVPSSRIVIIEGI 166 (621)
Q Consensus 108 g~vfQdp~l~d~~tV~enL~~L~~g---------k-----------~V~~-p~yd~~~~~rsggq~qrVa~ArVLIvEG~ 166 (621)
+|+||++.+++..++.+|+...... + .+.+ ...+.....+|+|+++++..+++++.+|.
T Consensus 84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~ 163 (265)
T PRK10253 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETA 163 (265)
T ss_pred EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCC
Confidence 9999999988888999998752100 0 0011 11234467889999999999999999999
Q ss_pred eeccccccCCCCeeEEecCCchHHHHHHHHHHHHH-cCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 167 YALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQR-VGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 167 lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~e-rG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
++++|||++.||+. ..+.+.++.+.+.+ .|.|++.++|++.... .++|++.++.+|.+...+...++
T Consensus 164 llllDEPt~gLD~~-------~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~----~~~d~i~~l~~G~i~~~g~~~~~ 231 (265)
T PRK10253 164 IMLLDEPTTWLDIS-------HQIDLLELLSELNREKGYTLAAVLHDLNQAC----RYASHLIALREGKIVAQGAPKEI 231 (265)
T ss_pred EEEEeCccccCCHH-------HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH----HhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999973 23444444444444 5899999999999887 77888888888887766555554
No 143
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=3.4e-22 Score=201.99 Aligned_cols=194 Identities=15% Similarity=0.187 Sum_probs=152.8
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhCC------CeeEEEECCccc--------
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFMP------SIAVISMDNYND-------- 102 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP------~sGvI~lDg~~~-------- 102 (621)
...+++++.++...+++++||++++|+ ++||+|+||||||||+++|+|+++ ++|.|.++|...
T Consensus 5 l~~~nl~~~~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 81 (252)
T PRK14256 5 VKLEQLNVHFGKNHAVKDVSMDFPENS---VTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPV 81 (252)
T ss_pred EEEEEEEEEeCCeeEEecceEEEcCCC---EEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChH
Confidence 346778888887889999999999999 999999999999999999999972 489999999642
Q ss_pred -ccccccccCCCCcccccchHHHHHHHHhc--CC---------------CccC-----ccccccccCccCCceeecCCcc
Q 038045 103 -SSRVVDGNFDDPRLTDYDTLLENVRDLRE--GK---------------PVQV-----PIYDFESSSRTGYRTVEVPSSR 159 (621)
Q Consensus 103 -~~R~Ig~vfQdp~l~d~~tV~enL~~L~~--gk---------------~V~~-----p~yd~~~~~rsggq~qrVa~Ar 159 (621)
.++.++|+||++.+++..++.+|+..... +. .+.+ ...+.....+|+|+++++..++
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~lar 161 (252)
T PRK14256 82 SIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIAR 161 (252)
T ss_pred HhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHH
Confidence 13458999999999999999999975211 10 0011 0112335678999999999999
Q ss_pred EEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeecc
Q 038045 160 IVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETME 239 (621)
Q Consensus 160 VLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~ 239 (621)
+++.+|.++++|||++.||+. ..+.+.++.+.+.+ +.|++.++|+.+... .++|++.++.+|.+...+
T Consensus 162 al~~~p~llllDEP~~gLD~~-------~~~~l~~~l~~~~~-~~tiiivsH~~~~~~----~~~d~i~~l~~G~i~~~~ 229 (252)
T PRK14256 162 TIAVKPEVILMDEPASALDPI-------STLKIEELIEELKE-KYTIIIVTHNMQQAA----RVSDYTAFFYMGDLVECG 229 (252)
T ss_pred HHhcCCCEEEEcCCcccCCHH-------HHHHHHHHHHHHHh-CCcEEEEECCHHHHH----hhCCEEEEEECCEEEEeC
Confidence 999999999999999999973 23445555555544 689999999999886 778888889999887766
Q ss_pred CceeEE
Q 038045 240 QTYDIY 245 (621)
Q Consensus 240 ~~aDIY 245 (621)
...+++
T Consensus 230 ~~~~~~ 235 (252)
T PRK14256 230 ETKKIF 235 (252)
T ss_pred CHHHHH
Confidence 666654
No 144
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.86 E-value=3.2e-22 Score=202.83 Aligned_cols=192 Identities=17% Similarity=0.190 Sum_probs=153.0
Q ss_pred ecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc-------ccccccc
Q 038045 39 QDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS-------SRVVDGN 110 (621)
Q Consensus 39 ~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~-------~R~Ig~v 110 (621)
.+++++.++...+++++||++++|+ ++||+||||||||||+++|+|++ |..|.|.++|.... .+.++|+
T Consensus 4 ~~~l~~~~~~~~il~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (256)
T TIGR03873 4 LSRVSWSAGGRLIVDGVDVTAPPGS---LTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALV 80 (256)
T ss_pred EEeEEEEECCEEEEeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEe
Confidence 4678888888899999999999999 99999999999999999999998 89999999986321 2358999
Q ss_pred CCCCcccccchHHHHHHHHhc------C--C------------CccC-ccccccccCccCCceeecCCccEEEEecceec
Q 038045 111 FDDPRLTDYDTLLENVRDLRE------G--K------------PVQV-PIYDFESSSRTGYRTVEVPSSRIVIIEGIYAL 169 (621)
Q Consensus 111 fQdp~l~d~~tV~enL~~L~~------g--k------------~V~~-p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLL 169 (621)
+|++..++..++.+|+.+... . . .+.+ ...+.....+|+|+++++..+++++.+|.+++
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll 160 (256)
T TIGR03873 81 EQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLL 160 (256)
T ss_pred cccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999987888899999865310 0 0 0011 11234456789999999999999999999999
Q ss_pred cccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 170 SEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 170 lDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
+|||++.||.. ..+.+..+.+.+.+.|.|++.++|+++... .++|++.++.+|.+...+...++
T Consensus 161 lDEPt~~LD~~-------~~~~l~~~l~~~~~~~~tiii~sH~~~~~~----~~~d~i~~l~~G~i~~~g~~~~~ 224 (256)
T TIGR03873 161 LDEPTNHLDVR-------AQLETLALVRELAATGVTVVAALHDLNLAA----SYCDHVVVLDGGRVVAAGPPREV 224 (256)
T ss_pred EcCccccCCHH-------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHH----HhCCEEEEEeCCCEEEecCHHHh
Confidence 99999999973 234455555555566899999999999886 77888888988888766666555
No 145
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2.1e-22 Score=206.86 Aligned_cols=192 Identities=15% Similarity=0.188 Sum_probs=148.1
Q ss_pred eecceeeeeCc-----EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc---------
Q 038045 38 IQDPLSFEKGF-----FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND--------- 102 (621)
Q Consensus 38 v~~~lsf~~G~-----~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~--------- 102 (621)
..+++++.++. ..+|+++||++++|+ +++|+||||||||||+++|+|++ |..|.|.++|...
T Consensus 4 ~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 80 (280)
T PRK13649 4 NLQNVSYTYQAGTPFEGRALFDVNLTIEDGS---YTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDI 80 (280)
T ss_pred EEEEEEEEcCCCCccccceeeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCH
Confidence 45677777753 469999999999999 99999999999999999999998 8999999998632
Q ss_pred --ccccccccCCCC--cccccchHHHHHHHHhc--CC--------------CccCc--cccccccCccCCceeecCCccE
Q 038045 103 --SSRVVDGNFDDP--RLTDYDTLLENVRDLRE--GK--------------PVQVP--IYDFESSSRTGYRTVEVPSSRI 160 (621)
Q Consensus 103 --~~R~Ig~vfQdp--~l~d~~tV~enL~~L~~--gk--------------~V~~p--~yd~~~~~rsggq~qrVa~ArV 160 (621)
.++.++|++|++ .+++ .++.+|+.+... +. .+.+. ..+.....+|+|+++++..+++
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~a 159 (280)
T PRK13649 81 KQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGI 159 (280)
T ss_pred HHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHH
Confidence 124589999997 3454 699999875321 10 11221 1244567889999999999999
Q ss_pred EEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccC
Q 038045 161 VIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQ 240 (621)
Q Consensus 161 LIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~ 240 (621)
++.+|.++++|||++.||+. ..+.+.++.+.+.+.|.|++.++|+.+... .++|++.++..|.+...+.
T Consensus 160 l~~~p~lllLDEPt~~LD~~-------~~~~l~~~l~~~~~~~~tiiivsH~~~~~~----~~~d~i~~l~~G~i~~~g~ 228 (280)
T PRK13649 160 LAMEPKILVLDEPTAGLDPK-------GRKELMTLFKKLHQSGMTIVLVTHLMDDVA----NYADFVYVLEKGKLVLSGK 228 (280)
T ss_pred HHcCCCEEEEeCCcccCCHH-------HHHHHHHHHHHHHHCCCEEEEEeccHHHHH----HhCCEEEEEECCEEEEeCC
Confidence 99999999999999999973 234555555555556899999999998876 6678888888887765555
Q ss_pred ceeE
Q 038045 241 TYDI 244 (621)
Q Consensus 241 ~aDI 244 (621)
..++
T Consensus 229 ~~~~ 232 (280)
T PRK13649 229 PKDI 232 (280)
T ss_pred HHHH
Confidence 4443
No 146
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2.2e-22 Score=228.79 Aligned_cols=199 Identities=15% Similarity=0.138 Sum_probs=158.5
Q ss_pred eeecceeeeeC-----------cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc--
Q 038045 37 PIQDPLSFEKG-----------FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-- 102 (621)
Q Consensus 37 ~v~~~lsf~~G-----------~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-- 102 (621)
.-.+++++.|+ ...+|+++||++++|+ ++||+|+||||||||+++|+|++ |+.|.|.++|...
T Consensus 314 L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge---~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~ 390 (623)
T PRK10261 314 LQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGE---TLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDT 390 (623)
T ss_pred EEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCC---EEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCc
Confidence 34667887774 2579999999999999 99999999999999999999999 8999999998621
Q ss_pred --------ccccccccCCCC--cccccchHHHHHHHHh--cC---------------CCccCc--cccccccCccCCcee
Q 038045 103 --------SSRVVDGNFDDP--RLTDYDTLLENVRDLR--EG---------------KPVQVP--IYDFESSSRTGYRTV 153 (621)
Q Consensus 103 --------~~R~Ig~vfQdp--~l~d~~tV~enL~~L~--~g---------------k~V~~p--~yd~~~~~rsggq~q 153 (621)
.++.++|+||++ .+++.+++.+++.... .+ +.+.++ ..+..++++|||++|
T Consensus 391 ~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQ 470 (623)
T PRK10261 391 LSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQ 470 (623)
T ss_pred CCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHH
Confidence 134689999998 4788899999987632 11 012232 245567899999999
Q ss_pred ecCCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHH-HcCCCceehHhHHHHHhccccccchhhhcCCC
Q 038045 154 EVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQ-RVGQEPEEIIQQISETSAKNLSVDQIKAVYPE 232 (621)
Q Consensus 154 rVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~-erG~Ti~~VtHd~eea~~R~v~~~d~iavl~e 232 (621)
++.++++++.+|.++++|||++.||+.. ...+..+.+.+. +.|.|++.|+|+++.+. .++|++.+|+.
T Consensus 471 Rv~iAraL~~~p~llllDEPts~LD~~~-------~~~i~~ll~~l~~~~g~tvi~isHdl~~v~----~~~dri~vl~~ 539 (623)
T PRK10261 471 RICIARALALNPKVIIADEAVSALDVSI-------RGQIINLLLDLQRDFGIAYLFISHDMAVVE----RISHRVAVMYL 539 (623)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHH-------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHH----HhCCEEEEEEC
Confidence 9999999999999999999999999742 334444444444 45999999999999887 78899999999
Q ss_pred CceeeccCceeEEecCC
Q 038045 233 GHTETMEQTYDIYLLPP 249 (621)
Q Consensus 233 g~Ie~~~~~aDIYi~P~ 249 (621)
|.+...+...+++-.|.
T Consensus 540 G~iv~~g~~~~i~~~p~ 556 (623)
T PRK10261 540 GQIVEIGPRRAVFENPQ 556 (623)
T ss_pred CEEEEecCHHHHhcCCC
Confidence 99987777777754443
No 147
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=4e-22 Score=201.35 Aligned_cols=196 Identities=14% Similarity=0.169 Sum_probs=154.3
Q ss_pred eecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CC-----eeEEEECCccc---------
Q 038045 38 IQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PS-----IAVISMDNYND--------- 102 (621)
Q Consensus 38 v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~-----sGvI~lDg~~~--------- 102 (621)
..++++|.++...+++++||++.+|+ ++||+||||||||||+++|+|++ |. .|.|.++|...
T Consensus 6 ~~~~l~~~~~~~~il~~~s~~i~~G~---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 82 (251)
T PRK14249 6 KIRGVNFFYHKHQVLKNINMDFPERQ---ITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVN 82 (251)
T ss_pred EEEEEEEEECCeeEecceEEEEcCCC---EEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHH
Confidence 45778888888889999999999999 99999999999999999999998 65 59999998632
Q ss_pred ccccccccCCCCcccccchHHHHHHHHhc--CCC---------------ccC-----ccccccccCccCCceeecCCccE
Q 038045 103 SSRVVDGNFDDPRLTDYDTLLENVRDLRE--GKP---------------VQV-----PIYDFESSSRTGYRTVEVPSSRI 160 (621)
Q Consensus 103 ~~R~Ig~vfQdp~l~d~~tV~enL~~L~~--gk~---------------V~~-----p~yd~~~~~rsggq~qrVa~ArV 160 (621)
.++.++|+||++.+++. ++.+|+.+... +.. +.+ ...+.....+|+|+++++..+++
T Consensus 83 ~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~lara 161 (251)
T PRK14249 83 LRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARV 161 (251)
T ss_pred hhceEEEEecCCccCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHH
Confidence 13468999999998875 99999975321 100 010 11234456789999999999999
Q ss_pred EEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccC
Q 038045 161 VIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQ 240 (621)
Q Consensus 161 LIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~ 240 (621)
++.+|.++++|||+..||+. ....+.++.+.+. .|.|++.++|++.... ..+|++.+++.|.+...+.
T Consensus 162 l~~~p~lllLDEPt~~LD~~-------~~~~l~~~l~~~~-~~~tilivsh~~~~~~----~~~d~i~~l~~G~i~~~~~ 229 (251)
T PRK14249 162 LAIEPEVILMDEPCSALDPV-------STMRIEELMQELK-QNYTIAIVTHNMQQAA----RASDWTGFLLTGDLVEYGR 229 (251)
T ss_pred HhcCCCEEEEeCCCccCCHH-------HHHHHHHHHHHHh-cCCEEEEEeCCHHHHH----hhCCEEEEEeCCeEEEeCC
Confidence 99999999999999999973 2345555555554 4889999999999887 6778888899888877777
Q ss_pred ceeEEecCC
Q 038045 241 TYDIYLLPP 249 (621)
Q Consensus 241 ~aDIYi~P~ 249 (621)
..+++-.|.
T Consensus 230 ~~~~~~~~~ 238 (251)
T PRK14249 230 TGEIFSRPR 238 (251)
T ss_pred HHHHHhCCC
Confidence 666643443
No 148
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.86 E-value=3.4e-22 Score=201.52 Aligned_cols=192 Identities=16% Similarity=0.207 Sum_probs=150.8
Q ss_pred eecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-C-----CeeEEEECCcccc--------
Q 038045 38 IQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-P-----SIAVISMDNYNDS-------- 103 (621)
Q Consensus 38 v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P-----~sGvI~lDg~~~~-------- 103 (621)
..+++++.++...+++++||++++|+ ++||+||||||||||+++|+|+. | ..|.|.++|....
T Consensus 5 ~~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14240 5 SVKDLDLFYGDFQALKKINLDIEENQ---VTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQ 81 (250)
T ss_pred EEEEEEEEECCceeeecceEEEcCCC---EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHH
Confidence 46788888877789999999999999 99999999999999999999986 2 5899999986321
Q ss_pred -cccccccCCCCcccccchHHHHHHHHhcCCC-----------------ccC-----ccccccccCccCCceeecCCccE
Q 038045 104 -SRVVDGNFDDPRLTDYDTLLENVRDLREGKP-----------------VQV-----PIYDFESSSRTGYRTVEVPSSRI 160 (621)
Q Consensus 104 -~R~Ig~vfQdp~l~d~~tV~enL~~L~~gk~-----------------V~~-----p~yd~~~~~rsggq~qrVa~ArV 160 (621)
++.++|++|++.+++ .++.+|+.+...... ... ...+.....+|+|++++++.+++
T Consensus 82 ~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara 160 (250)
T PRK14240 82 LRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARA 160 (250)
T ss_pred HhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 345899999998887 899999976321100 000 01233456789999999999999
Q ss_pred EEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccC
Q 038045 161 VIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQ 240 (621)
Q Consensus 161 LIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~ 240 (621)
++.+|.++++|||++.||+. ..+.+.++.+.+.+ +.|++.++|+.+... ..+|++.++++|.+...+.
T Consensus 161 l~~~p~llllDEP~~~LD~~-------~~~~l~~~l~~~~~-~~tiii~sH~~~~~~----~~~d~v~~l~~G~i~~~~~ 228 (250)
T PRK14240 161 LAVEPEVLLMDEPTSALDPI-------STLKIEELIQELKK-DYTIVIVTHNMQQAS----RISDKTAFFLNGEIVEFGD 228 (250)
T ss_pred HhcCCCEEEEeCCCccCCHH-------HHHHHHHHHHHHhc-CCeEEEEEeCHHHHH----hhCCEEEEEECCEEEEeCC
Confidence 99999999999999999973 23445555555543 789999999998776 6778888888888876666
Q ss_pred ceeEE
Q 038045 241 TYDIY 245 (621)
Q Consensus 241 ~aDIY 245 (621)
..+++
T Consensus 229 ~~~~~ 233 (250)
T PRK14240 229 TVDLF 233 (250)
T ss_pred HHHHH
Confidence 66653
No 149
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=3.8e-22 Score=201.49 Aligned_cols=194 Identities=16% Similarity=0.160 Sum_probs=153.0
Q ss_pred eeeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-C-----CeeEEEECCcccc------
Q 038045 36 VPIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-P-----SIAVISMDNYNDS------ 103 (621)
Q Consensus 36 ~~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P-----~sGvI~lDg~~~~------ 103 (621)
+...+++++.++...+++++||++.+|+ ++||+|+||||||||+++|+|+. | ..|.|.++|....
T Consensus 4 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYGEKQALNDINLPIYENK---ITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEECCeeeeeceeEEEcCCC---EEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 3456788888887889999999999999 99999999999999999999987 4 6899999986421
Q ss_pred ---cccccccCCCCcccccchHHHHHHHHhc--CC--C-------------ccC-----ccccccccCccCCceeecCCc
Q 038045 104 ---SRVVDGNFDDPRLTDYDTLLENVRDLRE--GK--P-------------VQV-----PIYDFESSSRTGYRTVEVPSS 158 (621)
Q Consensus 104 ---~R~Ig~vfQdp~l~d~~tV~enL~~L~~--gk--~-------------V~~-----p~yd~~~~~rsggq~qrVa~A 158 (621)
++.++|+||++.+++ .++.+|+.+... +. . +.+ ...+.....+|+|+++++..+
T Consensus 81 ~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 159 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIA 159 (251)
T ss_pred HHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHH
Confidence 345899999999887 899999975321 10 0 000 012344578899999999999
Q ss_pred cEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeec
Q 038045 159 RIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETM 238 (621)
Q Consensus 159 rVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~ 238 (621)
++++.+|.++++|||++.||+. ....+.++.+.+.+ +.|++.++|+.+... .++|++.++++|.+...
T Consensus 160 ral~~~p~llllDEP~~~LD~~-------~~~~l~~~L~~~~~-~~tiiivsH~~~~~~----~~~d~v~~l~~G~i~~~ 227 (251)
T PRK14270 160 RTIAVKPDVILMDEPTSALDPI-------STLKIEDLMVELKK-EYTIVIVTHNMQQAS----RVSDYTAFFLMGDLIEF 227 (251)
T ss_pred HHHhcCCCEEEEeCCcccCCHH-------HHHHHHHHHHHHHh-CCeEEEEEcCHHHHH----HhcCEEEEEECCeEEEe
Confidence 9999999999999999999973 23444555555544 589999999998876 67888888999988777
Q ss_pred cCceeEE
Q 038045 239 EQTYDIY 245 (621)
Q Consensus 239 ~~~aDIY 245 (621)
+...+++
T Consensus 228 ~~~~~~~ 234 (251)
T PRK14270 228 NKTEKIF 234 (251)
T ss_pred CCHHHHh
Confidence 6666653
No 150
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=4.4e-22 Score=220.54 Aligned_cols=193 Identities=12% Similarity=0.094 Sum_probs=153.8
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-C--CeeEEEECCccc--------ccc
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-P--SIAVISMDNYND--------SSR 105 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P--~sGvI~lDg~~~--------~~R 105 (621)
...+++++.++...+++++||++++|+ ++||+||||||||||+++|+|++ | +.|.|.++|... .++
T Consensus 6 l~~~nl~~~~~~~~il~~isl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 6 LEMKNITKTFGGVKALDNVSLKVRAGE---IVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82 (506)
T ss_pred EEEeeeEEEeCCeEeecceeEEEeCCe---EEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence 456788888888889999999999999 99999999999999999999998 5 699999998632 124
Q ss_pred cccccCCCCcccccchHHHHHHHHhc----CC---------------CccCc-cccccccCccCCceeecCCccEEEEec
Q 038045 106 VVDGNFDDPRLTDYDTLLENVRDLRE----GK---------------PVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEG 165 (621)
Q Consensus 106 ~Ig~vfQdp~l~d~~tV~enL~~L~~----gk---------------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG 165 (621)
.++|+||++.+++.+++.+|+.+... +. .+.+. ..+.....+|+|++|++..+++++.+|
T Consensus 83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p 162 (506)
T PRK13549 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQA 162 (506)
T ss_pred CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCC
Confidence 68999999999999999999976321 10 01111 124456789999999999999999999
Q ss_pred ceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCcee
Q 038045 166 IYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYD 243 (621)
Q Consensus 166 ~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aD 243 (621)
.++++|||++.||+. ....+..+.+.+.+.|.|++.++|+++.+. ..+|++.++++|.+...+...+
T Consensus 163 ~lllLDEPt~~LD~~-------~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~----~~~d~v~~l~~G~i~~~~~~~~ 229 (506)
T PRK13549 163 RLLILDEPTASLTES-------ETAVLLDIIRDLKAHGIACIYISHKLNEVK----AISDTICVIRDGRHIGTRPAAG 229 (506)
T ss_pred CEEEEeCCCCCCCHH-------HHHHHHHHHHHHHHCCCEEEEEeCcHHHHH----HhcCEEEEEECCEEeeeccccc
Confidence 999999999999973 234455555555567999999999999887 6778888888887765544433
No 151
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2e-22 Score=207.14 Aligned_cols=191 Identities=15% Similarity=0.182 Sum_probs=149.8
Q ss_pred ecceeeeeC-cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc--------ccccc
Q 038045 39 QDPLSFEKG-FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS--------SRVVD 108 (621)
Q Consensus 39 ~~~lsf~~G-~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~--------~R~Ig 108 (621)
.+++++.++ ...+|+++||++++|+ ++||+||||||||||+++|+|++ |..|.|.++|.... .+.++
T Consensus 4 ~~~l~~~~~~~~~~l~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 4 LENVSYSYPDGTPALENINLVIKKGE---YIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred EEEEEEEcCCCCceeeeeEEEEeCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 567888774 5679999999999999 99999999999999999999999 89999999986321 24589
Q ss_pred ccCCCCcc-cccchHHHHHHHHhcCC----------------CccCc-cccccccCccCCceeecCCccEEEEecceecc
Q 038045 109 GNFDDPRL-TDYDTLLENVRDLREGK----------------PVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYALS 170 (621)
Q Consensus 109 ~vfQdp~l-~d~~tV~enL~~L~~gk----------------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLl 170 (621)
|+||+|.. +...++.+|+.+..... .+.+. ..+.....+|+|+++++..+++++.+|.++++
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllL 160 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIF 160 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999863 56679999997532110 01111 12344678899999999999999999999999
Q ss_pred ccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 171 EKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 171 DEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
|||++.||+. ....+.++.+.+.+.|.|++.++|+.+... .+|++.++..|.+...+...++
T Consensus 161 DEPt~gLD~~-------~~~~l~~~l~~l~~~g~til~~tH~~~~~~-----~~d~v~~l~~G~i~~~g~~~~~ 222 (274)
T PRK13644 161 DEVTSMLDPD-------SGIAVLERIKKLHEKGKTIVYITHNLEELH-----DADRIIVMDRGKIVLEGEPENV 222 (274)
T ss_pred eCCcccCCHH-------HHHHHHHHHHHHHhCCCEEEEEecCHHHHh-----hCCEEEEEECCEEEEECCHHHH
Confidence 9999999973 234455555555567999999999998763 3788888988888766666555
No 152
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=3.6e-22 Score=201.32 Aligned_cols=191 Identities=16% Similarity=0.158 Sum_probs=150.7
Q ss_pred eecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-C-----CeeEEEECCccc---------
Q 038045 38 IQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-P-----SIAVISMDNYND--------- 102 (621)
Q Consensus 38 v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P-----~sGvI~lDg~~~--------- 102 (621)
..+++++.++...+++++||++++|+ +++|+||||||||||+++|+|++ | ..|.|.+||...
T Consensus 5 ~~~~l~~~~~~~~~l~~i~~~i~~Ge---~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~ 81 (250)
T PRK14262 5 EIENFSAYYGEKKAVKNVTMKIFKNQ---ITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTE 81 (250)
T ss_pred EEEeeEEEeCCceeEeeeeEeecCCC---EEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHH
Confidence 46788888887889999999999999 99999999999999999999987 3 789999998632
Q ss_pred ccccccccCCCCcccccchHHHHHHHHhc--CCC---------------ccC-----ccccccccCccCCceeecCCccE
Q 038045 103 SSRVVDGNFDDPRLTDYDTLLENVRDLRE--GKP---------------VQV-----PIYDFESSSRTGYRTVEVPSSRI 160 (621)
Q Consensus 103 ~~R~Ig~vfQdp~l~d~~tV~enL~~L~~--gk~---------------V~~-----p~yd~~~~~rsggq~qrVa~ArV 160 (621)
..+.++|+||++.+++ .++.+|+.+... +.. +.. ...+.....+|+|+++++..+++
T Consensus 82 ~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~a 160 (250)
T PRK14262 82 YRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARA 160 (250)
T ss_pred hhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHH
Confidence 1346899999999887 799999975321 100 000 01234456789999999999999
Q ss_pred EEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccC
Q 038045 161 VIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQ 240 (621)
Q Consensus 161 LIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~ 240 (621)
++.+|.++++|||+..||.. ..+.+.++.+.+.+ +.|++.++|+.+... .++|++.++.+|.+...+.
T Consensus 161 l~~~p~llllDEP~~~LD~~-------~~~~l~~~l~~~~~-~~tili~sH~~~~~~----~~~d~i~~l~~G~i~~~g~ 228 (250)
T PRK14262 161 LAVEPEVILLDEPTSALDPI-------ATQRIEKLLEELSE-NYTIVIVTHNIGQAI----RIADYIAFMYRGELIEYGP 228 (250)
T ss_pred HhCCCCEEEEeCCccccCHH-------HHHHHHHHHHHHhc-CcEEEEEeCCHHHHH----HhCCEEEEEECCEEEEecC
Confidence 99999999999999999973 23444555555544 789999999998776 6778888888888876666
Q ss_pred ceeE
Q 038045 241 TYDI 244 (621)
Q Consensus 241 ~aDI 244 (621)
..++
T Consensus 229 ~~~~ 232 (250)
T PRK14262 229 TREI 232 (250)
T ss_pred HHHH
Confidence 6555
No 153
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=4.2e-22 Score=200.85 Aligned_cols=193 Identities=17% Similarity=0.197 Sum_probs=152.9
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CC-----eeEEEECCcccc-------
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PS-----IAVISMDNYNDS------- 103 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~-----sGvI~lDg~~~~------- 103 (621)
...+++++.++...+++++||.+++|+ ++||+||||||||||+++|+|++ |. .|.|.++|....
T Consensus 5 l~~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (252)
T PRK14272 5 LSAQDVNIYYGDKQAVKNVNLDVQRGT---VNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81 (252)
T ss_pred EEEeeeEEEECCEEeeccceEEEcCCC---EEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHH
Confidence 456788888888889999999999999 99999999999999999999998 53 799999986321
Q ss_pred --cccccccCCCCcccccchHHHHHHHHhc--C---CC------------ccC-----ccccccccCccCCceeecCCcc
Q 038045 104 --SRVVDGNFDDPRLTDYDTLLENVRDLRE--G---KP------------VQV-----PIYDFESSSRTGYRTVEVPSSR 159 (621)
Q Consensus 104 --~R~Ig~vfQdp~l~d~~tV~enL~~L~~--g---k~------------V~~-----p~yd~~~~~rsggq~qrVa~Ar 159 (621)
++.++|+||++.+++..++.+|+..... + .. ... ...+.....+|+|+++++..++
T Consensus 82 ~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar 161 (252)
T PRK14272 82 AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIAR 161 (252)
T ss_pred HhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHH
Confidence 2358999999999988999999975321 1 00 000 1123445778999999999999
Q ss_pred EEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeecc
Q 038045 160 IVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETME 239 (621)
Q Consensus 160 VLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~ 239 (621)
+++.+|.++++|||++.||+. ..+.+.++.+.+.+ +.|++.++|+.+... .++|++.++..|.+...+
T Consensus 162 al~~~p~llllDEP~~~LD~~-------~~~~l~~~l~~~~~-~~tiii~sH~~~~~~----~~~d~i~~l~~G~i~~~~ 229 (252)
T PRK14272 162 ALAVEPEILLMDEPTSALDPA-------STARIEDLMTDLKK-VTTIIIVTHNMHQAA----RVSDTTSFFLVGDLVEHG 229 (252)
T ss_pred HHhcCCCEEEEeCCCccCCHH-------HHHHHHHHHHHHhc-CCeEEEEeCCHHHHH----HhCCEEEEEECCEEEEeC
Confidence 999999999999999999973 23444555555543 789999999999876 677888889988887666
Q ss_pred CceeE
Q 038045 240 QTYDI 244 (621)
Q Consensus 240 ~~aDI 244 (621)
...++
T Consensus 230 ~~~~~ 234 (252)
T PRK14272 230 PTDQL 234 (252)
T ss_pred CHHHH
Confidence 66665
No 154
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.86 E-value=3.6e-22 Score=220.30 Aligned_cols=190 Identities=10% Similarity=0.088 Sum_probs=152.4
Q ss_pred cceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc--------ccccccc
Q 038045 40 DPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS--------SRVVDGN 110 (621)
Q Consensus 40 ~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~--------~R~Ig~v 110 (621)
+++++.++...+++++||++++|+ ++||+||||||||||+++|+|++ |..|.|.++|.... ++.++|+
T Consensus 2 ~nl~~~~~~~~il~~vs~~i~~Ge---~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 2 SNISKSFPGVKALDNVNLKVRPHS---IHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred CceEEEeCCEEeeeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 567888888889999999999999 99999999999999999999999 89999999986321 2468999
Q ss_pred CCCCcccccchHHHHHHHHhc---CC----------------CccCc-cccccccCccCCceeecCCccEEEEecceecc
Q 038045 111 FDDPRLTDYDTLLENVRDLRE---GK----------------PVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYALS 170 (621)
Q Consensus 111 fQdp~l~d~~tV~enL~~L~~---gk----------------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLl 170 (621)
||++.+++..++.+|+.+... +. .+.+. ..+.....+|+|++|++..+++++.+|.++++
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllL 158 (491)
T PRK10982 79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIM 158 (491)
T ss_pred ecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 999998999999999875321 10 00111 12344678999999999999999999999999
Q ss_pred ccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCcee
Q 038045 171 EKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYD 243 (621)
Q Consensus 171 DEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aD 243 (621)
|||++.||+. ..+.+.++.+.+.+.|.|++.++|+.+.+. ..+|++.++.+|.+...+...+
T Consensus 159 DEPt~~LD~~-------~~~~l~~~l~~l~~~g~tvii~tH~~~~~~----~~~d~i~~l~~G~i~~~~~~~~ 220 (491)
T PRK10982 159 DEPTSSLTEK-------EVNHLFTIIRKLKERGCGIVYISHKMEEIF----QLCDEITILRDGQWIATQPLAG 220 (491)
T ss_pred eCCCCCCCHH-------HHHHHHHHHHHHHhCCCEEEEEecCHHHHH----HhCCEEEEEECCEEEeecChhh
Confidence 9999999973 234555555666667999999999999887 6778888888887765544433
No 155
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2.4e-22 Score=207.26 Aligned_cols=193 Identities=16% Similarity=0.199 Sum_probs=151.3
Q ss_pred eeecceeeeeCc--EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc-------ccc
Q 038045 37 PIQDPLSFEKGF--FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS-------SRV 106 (621)
Q Consensus 37 ~v~~~lsf~~G~--~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~-------~R~ 106 (621)
...+++++.++. +.+++++||++++|+ ++||+||||||||||+++|+|++ |..|.|.+||.... .+.
T Consensus 6 l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge---~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (279)
T PRK13635 6 IRVEHISFRYPDAATYALKDVSFSVYEGE---WVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQ 82 (279)
T ss_pred EEEEEEEEEeCCCCccceeeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhh
Confidence 346778887753 579999999999999 99999999999999999999999 89999999997321 246
Q ss_pred ccccCCCCc-ccccchHHHHHHHHhcCC----------------CccC-ccccccccCccCCceeecCCccEEEEeccee
Q 038045 107 VDGNFDDPR-LTDYDTLLENVRDLREGK----------------PVQV-PIYDFESSSRTGYRTVEVPSSRIVIIEGIYA 168 (621)
Q Consensus 107 Ig~vfQdp~-l~d~~tV~enL~~L~~gk----------------~V~~-p~yd~~~~~rsggq~qrVa~ArVLIvEG~lL 168 (621)
++|+||++. .+...++.+|+.+..... .+.+ +..+.....+|+|+++++..+++++.+|.++
T Consensus 83 i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 162 (279)
T PRK13635 83 VGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDII 162 (279)
T ss_pred eEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 899999984 677789999997632110 0011 1234456788999999999999999999999
Q ss_pred ccccccCCCCeeEEecCCchHHHHHHHHHHHHH-cCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 169 LSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQR-VGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 169 LlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~e-rG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
++|||++.||+. ....+.++.+.+.+ .|.|++.++|+++... . +|++.++.+|.+...++..++
T Consensus 163 lLDEPt~gLD~~-------~~~~l~~~l~~l~~~~~~tilivsH~~~~~~----~-~d~i~~l~~G~i~~~g~~~~~ 227 (279)
T PRK13635 163 ILDEATSMLDPR-------GRREVLETVRQLKEQKGITVLSITHDLDEAA----Q-ADRVIVMNKGEILEEGTPEEI 227 (279)
T ss_pred EEeCCcccCCHH-------HHHHHHHHHHHHHHcCCCEEEEEecCHHHHH----c-CCEEEEEECCEEEEECCHHHH
Confidence 999999999973 23455555555554 4899999999998774 4 788888888887766555544
No 156
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2.9e-22 Score=206.84 Aligned_cols=194 Identities=14% Similarity=0.132 Sum_probs=151.9
Q ss_pred eeecceeeeeC-cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc---------ccc
Q 038045 37 PIQDPLSFEKG-FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND---------SSR 105 (621)
Q Consensus 37 ~v~~~lsf~~G-~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~---------~~R 105 (621)
...++++|.++ .+.+++++||++++|+ ++||+|+||||||||+++|+|++ |..|.|.++|... .++
T Consensus 6 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 6 LKVEELNYNYSDGTHALKGININIKKGE---VTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred EEEEeEEEEeCCCCeeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 34778888885 5789999999999999 99999999999999999999999 8999999999742 124
Q ss_pred cccccCCCCc-ccccchHHHHHHHHhc--CC--------------CccCc-cccccccCccCCceeecCCccEEEEecce
Q 038045 106 VVDGNFDDPR-LTDYDTLLENVRDLRE--GK--------------PVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIY 167 (621)
Q Consensus 106 ~Ig~vfQdp~-l~d~~tV~enL~~L~~--gk--------------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~l 167 (621)
.++|+||++. .+...++.+|+.+... +. .+.+. ..+.....+|+|+++++.++++++.+|.+
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~l 162 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKV 162 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 6899999984 3345799999975321 10 01111 13345678899999999999999999999
Q ss_pred eccccccCCCCeeEEecCCchHHHHHHHHHHHHH-cCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 168 ALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQR-VGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 168 LLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~e-rG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
+++|||+..||+. ....+..+.+.+.+ .|.|++.++|+++.+. .++|++.++.+|.+...+...++
T Consensus 163 LilDEPt~gLD~~-------~~~~l~~~l~~l~~~~g~tillvsH~~~~~~----~~~dri~~l~~G~i~~~g~~~~~ 229 (283)
T PRK13636 163 LVLDEPTAGLDPM-------GVSEIMKLLVEMQKELGLTIIIATHDIDIVP----LYCDNVFVMKEGRVILQGNPKEV 229 (283)
T ss_pred EEEeCCccCCCHH-------HHHHHHHHHHHHHHhCCCEEEEEecCHHHHH----HhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999973 23344444444444 4899999999999887 67888889998988766666554
No 157
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2.7e-22 Score=206.18 Aligned_cols=193 Identities=16% Similarity=0.160 Sum_probs=151.1
Q ss_pred eecceeeeeC-cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc---------ccc
Q 038045 38 IQDPLSFEKG-FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS---------SRV 106 (621)
Q Consensus 38 v~~~lsf~~G-~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~---------~R~ 106 (621)
..+++++.++ ...+++++||++.+|+ ++||+||||||||||+++|+|++ |..|.|.++|.... .+.
T Consensus 3 ~~~~l~~~~~~~~~~l~~vsl~i~~Ge---~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 3 ETRDLKYSYPDGTEALKGINFKAEKGE---MVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEeCCCCeeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 3567888875 4679999999999999 99999999999999999999999 88999999996421 245
Q ss_pred ccccCCCCc-ccccchHHHHHHHHhc--C--------------CCccC-ccccccccCccCCceeecCCccEEEEeccee
Q 038045 107 VDGNFDDPR-LTDYDTLLENVRDLRE--G--------------KPVQV-PIYDFESSSRTGYRTVEVPSSRIVIIEGIYA 168 (621)
Q Consensus 107 Ig~vfQdp~-l~d~~tV~enL~~L~~--g--------------k~V~~-p~yd~~~~~rsggq~qrVa~ArVLIvEG~lL 168 (621)
++|+||++. .+...++.+|+.+... + +.+.+ ...+....++|+|+++++..+++++.+|.++
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~ll 159 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEII 159 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 899999974 3334699999975321 1 00111 1234456788999999999999999999999
Q ss_pred ccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 169 LSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 169 LlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
++|||++.||+. ..+.+.++.+.+.+.|.|++.++|+.+.+. .++|++.++.+|.+...+++.++
T Consensus 160 llDEPt~gLD~~-------~~~~l~~~l~~l~~~~~til~vtH~~~~~~----~~~d~i~~l~~G~i~~~g~~~~~ 224 (275)
T PRK13639 160 VLDEPTSGLDPM-------GASQIMKLLYDLNKEGITIIISTHDVDLVP----VYADKVYVMSDGKIIKEGTPKEV 224 (275)
T ss_pred EEeCCCcCCCHH-------HHHHHHHHHHHHHHCCCEEEEEecCHHHHH----HhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999973 234455555555556999999999999887 67888888988888766666655
No 158
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.86 E-value=6.7e-22 Score=202.27 Aligned_cols=193 Identities=16% Similarity=0.140 Sum_probs=151.7
Q ss_pred eeeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-C-----CeeEEEECCcccc------
Q 038045 36 VPIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-P-----SIAVISMDNYNDS------ 103 (621)
Q Consensus 36 ~~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P-----~sGvI~lDg~~~~------ 103 (621)
....+++++.++...+|+++||++++|+ +++|+||||||||||+++|+|++ | ..|.|.++|....
T Consensus 19 ~l~~~nl~~~~~~~~il~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~ 95 (267)
T PRK14235 19 KMRARDVSVFYGEKQALFDVDLDIPEKT---VTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDV 95 (267)
T ss_pred eEEEEeEEEEECCEEEEEEEEEEEcCCC---EEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccch
Confidence 4567889999888889999999999999 99999999999999999999998 4 7899999986321
Q ss_pred ---cccccccCCCCcccccchHHHHHHHHhc--CC----------------CccCc-----cccccccCccCCceeecCC
Q 038045 104 ---SRVVDGNFDDPRLTDYDTLLENVRDLRE--GK----------------PVQVP-----IYDFESSSRTGYRTVEVPS 157 (621)
Q Consensus 104 ---~R~Ig~vfQdp~l~d~~tV~enL~~L~~--gk----------------~V~~p-----~yd~~~~~rsggq~qrVa~ 157 (621)
++.++|+||++.+++. ++.+|+.+... +. .+.+. .++.....+|+|++|++..
T Consensus 96 ~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~l 174 (267)
T PRK14235 96 VELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCI 174 (267)
T ss_pred HHHhhceEEEecCCCCCCC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHH
Confidence 2458999999998874 99999975321 10 01111 1233457789999999999
Q ss_pred ccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceee
Q 038045 158 SRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTET 237 (621)
Q Consensus 158 ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~ 237 (621)
+++++.+|.++++|||++.||+. ..+.+..+.+.+.+ +.|++.++|+..... ..+|++.++..|.+..
T Consensus 175 aral~~~p~lllLDEPt~~LD~~-------~~~~l~~~L~~l~~-~~tiiivtH~~~~~~----~~~d~v~~l~~G~i~~ 242 (267)
T PRK14235 175 ARAIAVSPEVILMDEPCSALDPI-------ATAKVEELIDELRQ-NYTIVIVTHSMQQAA----RVSQRTAFFHLGNLVE 242 (267)
T ss_pred HHHHHcCCCEEEEeCCCcCCCHH-------HHHHHHHHHHHHhc-CCeEEEEEcCHHHHH----hhCCEEEEEECCEEEE
Confidence 99999999999999999999973 23444455555544 689999999998876 6777788888888876
Q ss_pred ccCceeE
Q 038045 238 MEQTYDI 244 (621)
Q Consensus 238 ~~~~aDI 244 (621)
.+...++
T Consensus 243 ~g~~~~~ 249 (267)
T PRK14235 243 VGDTEKM 249 (267)
T ss_pred eCCHHHH
Confidence 6655554
No 159
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.86 E-value=5e-22 Score=200.27 Aligned_cols=193 Identities=16% Similarity=0.165 Sum_probs=151.9
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC---C---CeeEEEECCccc--------
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM---P---SIAVISMDNYND-------- 102 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl---P---~sGvI~lDg~~~-------- 102 (621)
...+++++.++...+++++||++++|+ +++|+||||||||||+++|+|+. | ..|.|.++|...
T Consensus 6 l~~~~l~~~~~~~~~l~~~s~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14239 6 LQVSDLSVYYNKKKALNSVSLDFYPNE---ITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82 (252)
T ss_pred EEEEeeEEEECCeeeeeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchH
Confidence 346788888888889999999999999 99999999999999999999984 5 489999998632
Q ss_pred -ccccccccCCCCcccccchHHHHHHHHhc--CC---C------------ccC-----ccccccccCccCCceeecCCcc
Q 038045 103 -SSRVVDGNFDDPRLTDYDTLLENVRDLRE--GK---P------------VQV-----PIYDFESSSRTGYRTVEVPSSR 159 (621)
Q Consensus 103 -~~R~Ig~vfQdp~l~d~~tV~enL~~L~~--gk---~------------V~~-----p~yd~~~~~rsggq~qrVa~Ar 159 (621)
.++.++|+||++.+|+ .++.+|+..... +. . +.. ...+.....+|+|+++++..++
T Consensus 83 ~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar 161 (252)
T PRK14239 83 DLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIAR 161 (252)
T ss_pred hhhhcEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHH
Confidence 1346899999999887 799999975321 10 0 000 0123445778999999999999
Q ss_pred EEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeecc
Q 038045 160 IVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETME 239 (621)
Q Consensus 160 VLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~ 239 (621)
+++.+|.++++|||++.||.. ..+.+..+.+.+.+ +.|++.++|+.+... .++|++.++.+|.+...+
T Consensus 162 al~~~p~llllDEPt~~LD~~-------~~~~l~~~l~~~~~-~~tii~~sH~~~~~~----~~~d~i~~l~~G~i~~~g 229 (252)
T PRK14239 162 VLATSPKIILLDEPTSALDPI-------SAGKIEETLLGLKD-DYTMLLVTRSMQQAS----RISDRTGFFLDGDLIEYN 229 (252)
T ss_pred HHhcCCCEEEEcCCccccCHH-------HHHHHHHHHHHHhh-CCeEEEEECCHHHHH----HhCCEEEEEECCEEEEeC
Confidence 999999999999999999973 23444455555544 689999999998876 678888889999887777
Q ss_pred CceeEE
Q 038045 240 QTYDIY 245 (621)
Q Consensus 240 ~~aDIY 245 (621)
...+++
T Consensus 230 ~~~~~~ 235 (252)
T PRK14239 230 DTKQMF 235 (252)
T ss_pred CHHHHH
Confidence 766653
No 160
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=5.8e-22 Score=201.29 Aligned_cols=193 Identities=13% Similarity=0.170 Sum_probs=152.6
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-C-----CeeEEEECCcccc-------
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-P-----SIAVISMDNYNDS------- 103 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P-----~sGvI~lDg~~~~------- 103 (621)
...+++++.++...+++++||++++|+ ++||+|+||||||||+++|+|++ | ..|.|.++|....
T Consensus 13 l~i~~l~~~~~~~~~l~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 89 (259)
T PRK14274 13 YQINGMNLWYGQHHALKNINLSIPENE---VTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV 89 (259)
T ss_pred EEEeeEEEEECCeeeEEeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence 457788898888889999999999999 99999999999999999999988 3 4899999987421
Q ss_pred --cccccccCCCCcccccchHHHHHHHHhc--CC---------------CccC-----ccccccccCccCCceeecCCcc
Q 038045 104 --SRVVDGNFDDPRLTDYDTLLENVRDLRE--GK---------------PVQV-----PIYDFESSSRTGYRTVEVPSSR 159 (621)
Q Consensus 104 --~R~Ig~vfQdp~l~d~~tV~enL~~L~~--gk---------------~V~~-----p~yd~~~~~rsggq~qrVa~Ar 159 (621)
++.++|+||++.+++. ++.+|+.+... +. .+.+ ...+.....+|+|+++++..++
T Consensus 90 ~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~lar 168 (259)
T PRK14274 90 ELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIAR 168 (259)
T ss_pred HHhhceEEEecCCccccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHH
Confidence 2458999999988875 99999875321 10 0011 0123445678999999999999
Q ss_pred EEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeecc
Q 038045 160 IVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETME 239 (621)
Q Consensus 160 VLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~ 239 (621)
+++.+|.++++|||++.||+. ....+.++.+.+.+ +.|++.++|+.+... ..+|++.++..|.+...+
T Consensus 169 al~~~p~llllDEPt~~LD~~-------~~~~l~~~l~~~~~-~~tiiivtH~~~~~~----~~~d~i~~l~~G~i~~~g 236 (259)
T PRK14274 169 ALATNPDVLLMDEPTSALDPV-------STRKIEELILKLKE-KYTIVIVTHNMQQAA----RVSDQTAFFYMGELVECN 236 (259)
T ss_pred HHhcCCCEEEEcCCcccCCHH-------HHHHHHHHHHHHhc-CCEEEEEEcCHHHHH----HhCCEEEEEECCEEEEEC
Confidence 999999999999999999973 23444455555544 789999999998876 677888889999888777
Q ss_pred CceeEE
Q 038045 240 QTYDIY 245 (621)
Q Consensus 240 ~~aDIY 245 (621)
...+++
T Consensus 237 ~~~~~~ 242 (259)
T PRK14274 237 DTNKMF 242 (259)
T ss_pred CHHHHh
Confidence 777764
No 161
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.86 E-value=4.5e-22 Score=201.96 Aligned_cols=195 Identities=14% Similarity=0.112 Sum_probs=149.7
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcc-----cc-------
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYN-----DS------- 103 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~-----~~------- 103 (621)
...+++++.++...+++++||++++|+ ++||+||||||||||+++|+|++ |..|.|.++|.. ..
T Consensus 7 l~~~~l~~~~~~~~il~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~ 83 (258)
T PRK11701 7 LSVRGLTKLYGPRKGCRDVSFDLYPGE---VLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER 83 (258)
T ss_pred EEEeeeEEEcCCceeeeeeeEEEeCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHH
Confidence 456788888877789999999999999 99999999999999999999999 899999999864 11
Q ss_pred ----cccccccCCCCc--ccccchHHHHHHHHh--cC---------------CCccC--ccccccccCccCCceeecCCc
Q 038045 104 ----SRVVDGNFDDPR--LTDYDTLLENVRDLR--EG---------------KPVQV--PIYDFESSSRTGYRTVEVPSS 158 (621)
Q Consensus 104 ----~R~Ig~vfQdp~--l~d~~tV~enL~~L~--~g---------------k~V~~--p~yd~~~~~rsggq~qrVa~A 158 (621)
.+.++|+||++. +++..++.+|+.... .+ ..... ...+.....+|+|+++++..+
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~la 163 (258)
T PRK11701 84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIA 163 (258)
T ss_pred HHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHH
Confidence 235899999984 455566666664311 00 01112 123455678899999999999
Q ss_pred cEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHH-HHcCCCceehHhHHHHHhccccccchhhhcCCCCceee
Q 038045 159 RIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDI-QRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTET 237 (621)
Q Consensus 159 rVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl-~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~ 237 (621)
++++.+|.++++|||++.||+. ..+.+..+.+.+ .+.|.|++.++|+.+... .++|++.++.+|.+..
T Consensus 164 ral~~~p~llllDEPt~~LD~~-------~~~~l~~~l~~~~~~~~~tii~isH~~~~~~----~~~d~i~~l~~g~i~~ 232 (258)
T PRK11701 164 RNLVTHPRLVFMDEPTGGLDVS-------VQARLLDLLRGLVRELGLAVVIVTHDLAVAR----LLAHRLLVMKQGRVVE 232 (258)
T ss_pred HHHhcCCCEEEEcCCcccCCHH-------HHHHHHHHHHHHHHhcCcEEEEEeCCHHHHH----HhcCEEEEEECCEEEE
Confidence 9999999999999999999973 233444444444 345899999999999886 6678888888898877
Q ss_pred ccCceeEE
Q 038045 238 MEQTYDIY 245 (621)
Q Consensus 238 ~~~~aDIY 245 (621)
.+...+++
T Consensus 233 ~~~~~~~~ 240 (258)
T PRK11701 233 SGLTDQVL 240 (258)
T ss_pred eCCHHHHh
Confidence 66666653
No 162
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=5.5e-22 Score=199.92 Aligned_cols=191 Identities=15% Similarity=0.157 Sum_probs=151.5
Q ss_pred eecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-C-----CeeEEEECCccc--------c
Q 038045 38 IQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-P-----SIAVISMDNYND--------S 103 (621)
Q Consensus 38 v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P-----~sGvI~lDg~~~--------~ 103 (621)
..+++++.++...+++++||++++|+ ++||+||||||||||+++|+|+. | ..|.|.++|... .
T Consensus 5 ~~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 81 (249)
T PRK14253 5 NIENLDLFYGENQALKSINLPIPARQ---VTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADL 81 (249)
T ss_pred EEeccEEEECCeeeeecceEEecCCC---EEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHH
Confidence 46788888888889999999999999 99999999999999999999998 4 389999998632 1
Q ss_pred cccccccCCCCcccccchHHHHHHHHhc--CC---C------------ccC-----ccccccccCccCCceeecCCccEE
Q 038045 104 SRVVDGNFDDPRLTDYDTLLENVRDLRE--GK---P------------VQV-----PIYDFESSSRTGYRTVEVPSSRIV 161 (621)
Q Consensus 104 ~R~Ig~vfQdp~l~d~~tV~enL~~L~~--gk---~------------V~~-----p~yd~~~~~rsggq~qrVa~ArVL 161 (621)
++.++|+||++.+|+ .++.+|+..... +. . +.+ ...+.....+|+|+++++..++++
T Consensus 82 ~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 160 (249)
T PRK14253 82 RIKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTI 160 (249)
T ss_pred HhheeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHH
Confidence 246899999999887 799999975321 10 0 011 112334567899999999999999
Q ss_pred EEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCc
Q 038045 162 IIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQT 241 (621)
Q Consensus 162 IvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~ 241 (621)
+.+|.++++|||++.||+. ..+.+.++.+.+.+ +.|++.++|+..... .++|++.++.+|.+...+..
T Consensus 161 ~~~p~llllDEP~~~LD~~-------~~~~l~~~l~~~~~-~~tii~~sh~~~~~~----~~~d~i~~l~~G~i~~~g~~ 228 (249)
T PRK14253 161 AMEPDVILMDEPTSALDPI-------ATHKIEELMEELKK-NYTIVIVTHSMQQAR----RISDRTAFFLMGELVEHDDT 228 (249)
T ss_pred HcCCCEEEEeCCCccCCHH-------HHHHHHHHHHHHhc-CCeEEEEecCHHHHH----HhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999973 23455555555544 589999999998876 77888889999988776666
Q ss_pred eeE
Q 038045 242 YDI 244 (621)
Q Consensus 242 aDI 244 (621)
.++
T Consensus 229 ~~~ 231 (249)
T PRK14253 229 QVI 231 (249)
T ss_pred HHH
Confidence 555
No 163
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.86 E-value=3.5e-22 Score=203.16 Aligned_cols=191 Identities=16% Similarity=0.148 Sum_probs=150.2
Q ss_pred eecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC------CCeeEEEECCccc---------
Q 038045 38 IQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM------PSIAVISMDNYND--------- 102 (621)
Q Consensus 38 v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl------P~sGvI~lDg~~~--------- 102 (621)
..+++++.++...+++++||++++|+ +++|+||||||||||+++|+|++ |..|.|.++|...
T Consensus 15 ~~~~l~~~~~~~~il~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~ 91 (260)
T PRK10744 15 QVRNLNFYYGKFHALKNINLDIAKNQ---VTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIAL 91 (260)
T ss_pred EEEEEEEEeCCeEEeeceeEEEcCCC---EEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHH
Confidence 45778888888889999999999999 99999999999999999999997 2689999998642
Q ss_pred ccccccccCCCCcccccchHHHHHHHHhc---CC--------------CccC-----ccccccccCccCCceeecCCccE
Q 038045 103 SSRVVDGNFDDPRLTDYDTLLENVRDLRE---GK--------------PVQV-----PIYDFESSSRTGYRTVEVPSSRI 160 (621)
Q Consensus 103 ~~R~Ig~vfQdp~l~d~~tV~enL~~L~~---gk--------------~V~~-----p~yd~~~~~rsggq~qrVa~ArV 160 (621)
.++.++|+||++.+++ .++.+|+..... +. .+.. ...+.....+|+|+++++..+++
T Consensus 92 ~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lara 170 (260)
T PRK10744 92 LRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARG 170 (260)
T ss_pred HhcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 1246899999998887 799999875321 10 0111 01233456789999999999999
Q ss_pred EEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccC
Q 038045 161 VIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQ 240 (621)
Q Consensus 161 LIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~ 240 (621)
++.+|.++++|||++.||.. ..+.+..+.+.+. .+.|++.++|+.+... .++|++.++++|.+...+.
T Consensus 171 l~~~p~lllLDEPt~~LD~~-------~~~~l~~~L~~~~-~~~tiii~sH~~~~~~----~~~d~i~~l~~G~i~~~g~ 238 (260)
T PRK10744 171 IAIRPEVLLLDEPCSALDPI-------STGRIEELITELK-QDYTVVIVTHNMQQAA----RCSDYTAFMYLGELIEFGN 238 (260)
T ss_pred HHCCCCEEEEcCCCccCCHH-------HHHHHHHHHHHHh-cCCeEEEEeCCHHHHH----HhCCEEEEEECCEEEEeCC
Confidence 99999999999999999973 2344445555554 3789999999998876 6778888888888877666
Q ss_pred ceeE
Q 038045 241 TYDI 244 (621)
Q Consensus 241 ~aDI 244 (621)
..++
T Consensus 239 ~~~~ 242 (260)
T PRK10744 239 TDTI 242 (260)
T ss_pred HHHH
Confidence 6555
No 164
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.86 E-value=5.5e-22 Score=201.33 Aligned_cols=193 Identities=15% Similarity=0.175 Sum_probs=150.9
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-C-----CeeEEEECCccc--------
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-P-----SIAVISMDNYND-------- 102 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P-----~sGvI~lDg~~~-------- 102 (621)
...+++++.++...+|+++||++++|+ ++||+||||||||||+++|+|+. | ..|.|.++|...
T Consensus 5 l~i~~v~~~~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~ 81 (258)
T PRK14241 5 IDVKDLNIYYGSFHAVEDVNLNIEPRS---VTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81 (258)
T ss_pred EEEeeEEEEECCEeeeeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChH
Confidence 346788888887889999999999999 99999999999999999999998 4 599999998632
Q ss_pred -ccccccccCCCCcccccchHHHHHHHHhc--CC---------------CccC-----ccccccccCccCCceeecCCcc
Q 038045 103 -SSRVVDGNFDDPRLTDYDTLLENVRDLRE--GK---------------PVQV-----PIYDFESSSRTGYRTVEVPSSR 159 (621)
Q Consensus 103 -~~R~Ig~vfQdp~l~d~~tV~enL~~L~~--gk---------------~V~~-----p~yd~~~~~rsggq~qrVa~Ar 159 (621)
.++.++|+||++.+++..++.+|+..... +. .+.+ ...+.....+|+|+++++..++
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar 161 (258)
T PRK14241 82 AVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIAR 161 (258)
T ss_pred HHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHH
Confidence 12468999999999999999999975321 10 0111 1123445778999999999999
Q ss_pred EEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCC------CC
Q 038045 160 IVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYP------EG 233 (621)
Q Consensus 160 VLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~------eg 233 (621)
+++.+|.++++|||++.||+. ..+.+.++.+.+. .+.|++.++|+.+... ..+|++.++. +|
T Consensus 162 al~~~p~llllDEPt~~LD~~-------~~~~l~~~l~~~~-~~~tviivsH~~~~~~----~~~d~i~~l~~~~~~~~g 229 (258)
T PRK14241 162 AIAVEPDVLLMDEPCSALDPI-------STLAIEDLINELK-QDYTIVIVTHNMQQAA----RVSDQTAFFNLEATGKPG 229 (258)
T ss_pred HHhcCCCEEEEcCCCccCCHH-------HHHHHHHHHHHHh-cCCEEEEEecCHHHHH----HhCCEEEEEecccCCCCc
Confidence 999999999999999999973 2345555555554 3689999999998876 6677777775 67
Q ss_pred ceeeccCceeE
Q 038045 234 HTETMEQTYDI 244 (621)
Q Consensus 234 ~Ie~~~~~aDI 244 (621)
.+...+...++
T Consensus 230 ~i~~~~~~~~~ 240 (258)
T PRK14241 230 RLVEIDDTEKI 240 (258)
T ss_pred eEEecCCHHHH
Confidence 77666666555
No 165
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.86 E-value=4.6e-22 Score=226.10 Aligned_cols=195 Identities=14% Similarity=0.191 Sum_probs=153.5
Q ss_pred eeecceeeeeC----cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcc----------
Q 038045 37 PIQDPLSFEKG----FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYN---------- 101 (621)
Q Consensus 37 ~v~~~lsf~~G----~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~---------- 101 (621)
.-.+++++.|+ ...++++|||++++|+ ++||+|+||||||||+++|+|++ |..|.|.++|..
T Consensus 13 l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge---~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~ 89 (623)
T PRK10261 13 LAVENLNIAFMQEQQKIAAVRNLSFSLQRGE---TLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIE 89 (623)
T ss_pred EEEeceEEEecCCCCceeEEEeeEEEECCCC---EEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccc
Confidence 44677877775 3579999999999999 99999999999999999999999 889999987631
Q ss_pred ----c-------ccccccccCCCC--cccccchHHHHHHHHhc---C--------------CCccCc----cccccccCc
Q 038045 102 ----D-------SSRVVDGNFDDP--RLTDYDTLLENVRDLRE---G--------------KPVQVP----IYDFESSSR 147 (621)
Q Consensus 102 ----~-------~~R~Ig~vfQdp--~l~d~~tV~enL~~L~~---g--------------k~V~~p----~yd~~~~~r 147 (621)
. ..+.++|+||+| .+++.+++.+|+.+... + ..+.++ ..+...+++
T Consensus 90 ~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~L 169 (623)
T PRK10261 90 LSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQL 169 (623)
T ss_pred cccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccC
Confidence 0 013589999998 57888999999976321 1 012232 135567889
Q ss_pred cCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHH-HcCCCceehHhHHHHHhccccccchh
Q 038045 148 TGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQ-RVGQEPEEIIQQISETSAKNLSVDQI 226 (621)
Q Consensus 148 sggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~-erG~Ti~~VtHd~eea~~R~v~~~d~ 226 (621)
|||++|++.++++++.+|.++++|||+..||+. ....+..+.+.+. +.|.|++.|+|++..+. .++|+
T Consensus 170 SgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~-------~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~----~~adr 238 (623)
T PRK10261 170 SGGMRQRVMIAMALSCRPAVLIADEPTTALDVT-------IQAQILQLIKVLQKEMSMGVIFITHDMGVVA----EIADR 238 (623)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHH-------HHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH----HhCCE
Confidence 999999999999999999999999999999973 2334445555554 45999999999999887 77888
Q ss_pred hhcCCCCceeeccCceeEE
Q 038045 227 KAVYPEGHTETMEQTYDIY 245 (621)
Q Consensus 227 iavl~eg~Ie~~~~~aDIY 245 (621)
+.+|++|.+...+.+.+++
T Consensus 239 i~vl~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 239 VLVMYQGEAVETGSVEQIF 257 (623)
T ss_pred EEEeeCCeecccCCHHHhh
Confidence 8999999887666555553
No 166
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.86 E-value=3e-22 Score=191.80 Aligned_cols=197 Identities=17% Similarity=0.202 Sum_probs=157.2
Q ss_pred ecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcc-------------ccc
Q 038045 39 QDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYN-------------DSS 104 (621)
Q Consensus 39 ~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~-------------~~~ 104 (621)
++++.|.||...+|.||+|+.+.|+ .+.++||||+|||||+|.|.-+. |.+|.+.+.|.. ..+
T Consensus 5 v~~in~~yg~~q~lfdi~l~~~~ge---tlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr 81 (242)
T COG4161 5 LNGINCFYGAHQALFDITLDCPEGE---TLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLR 81 (242)
T ss_pred EcccccccccchheeeeeecCCCCC---EEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHH
Confidence 5678889999999999999999999 89999999999999999998887 999999997641 124
Q ss_pred ccccccCCCCcccccchHHHHHHH-Hhc--C--------------CCccC-ccccccccCccCCceeecCCccEEEEecc
Q 038045 105 RVVDGNFDDPRLTDYDTLLENVRD-LRE--G--------------KPVQV-PIYDFESSSRTGYRTVEVPSSRIVIIEGI 166 (621)
Q Consensus 105 R~Ig~vfQdp~l~d~~tV~enL~~-L~~--g--------------k~V~~-p~yd~~~~~rsggq~qrVa~ArVLIvEG~ 166 (621)
+.+||+||.+.+||++||.+|+-. ..+ + +...+ +..|.-+-.++||++|+|+++|++.++|.
T Consensus 82 ~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpq 161 (242)
T COG4161 82 RNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQ 161 (242)
T ss_pred HhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCc
Confidence 579999999999999999999854 111 0 01111 22344456789999999999999999999
Q ss_pred eeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEEe
Q 038045 167 YALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIYL 246 (621)
Q Consensus 167 lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIYi 246 (621)
++|.|||+..||+-+ ..-+-.|++.+.+.|+|...|+|+.+.+. +.+.++..|..|.|...+..+.. -
T Consensus 162 vllfdeptaaldpei-------taqvv~iikel~~tgitqvivthev~va~----k~as~vvyme~g~ive~g~a~~f-t 229 (242)
T COG4161 162 VLLFDEPTAALDPEI-------TAQIVSIIKELAETGITQVIVTHEVEVAR----KTASRVVYMENGHIVEQGDASCF-T 229 (242)
T ss_pred EEeecCcccccCHHH-------HHHHHHHHHHHHhcCceEEEEEeehhHHH----hhhhheEeeecCeeEeecchhhc-c
Confidence 999999999999843 23445667778889999999999998876 55566667888888887765443 4
Q ss_pred cCCC
Q 038045 247 LPPG 250 (621)
Q Consensus 247 ~P~~ 250 (621)
.|..
T Consensus 230 ~p~t 233 (242)
T COG4161 230 EPQT 233 (242)
T ss_pred CccH
Confidence 5544
No 167
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.86 E-value=5e-22 Score=199.47 Aligned_cols=192 Identities=20% Similarity=0.204 Sum_probs=152.7
Q ss_pred ecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-----ccccccccCC
Q 038045 39 QDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-----SSRVVDGNFD 112 (621)
Q Consensus 39 ~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-----~~R~Ig~vfQ 112 (621)
.+++++.++...+++++||++.+|+ ++||+||||||||||+++|+|++ |..|.|.+||... ..+.++|++|
T Consensus 3 i~~l~~~~~~~~il~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q 79 (237)
T TIGR00968 3 IANISKRFGSFQALDDVNLEVPTGS---LVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQ 79 (237)
T ss_pred EEEEEEEECCeeeeeeEEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEec
Confidence 4667888887889999999999999 99999999999999999999998 8999999998642 1346899999
Q ss_pred CCcccccchHHHHHHHHhcCC----------------CccC-ccccccccCccCCceeecCCccEEEEecceeccccccC
Q 038045 113 DPRLTDYDTLLENVRDLREGK----------------PVQV-PIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRP 175 (621)
Q Consensus 113 dp~l~d~~tV~enL~~L~~gk----------------~V~~-p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s 175 (621)
++.+|+..++.+|+.+..... ...+ +..+......|+|+++++..+++++.+|.++++|||++
T Consensus 80 ~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~ 159 (237)
T TIGR00968 80 HYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFG 159 (237)
T ss_pred ChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 999999899999997533110 0111 11233456789999999999999999999999999999
Q ss_pred CCCeeEEecCCchHHHHHHHHHHHHHc-CCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 176 LLDLRVSVTGGVHFDLVKRVLRDIQRV-GQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 176 ~LDlkV~Vd~~~d~~LirRI~Rdl~er-G~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
.+|.. ..+.+.++.+.+.+. |.|++.++|+..... .++|++.++.+|.+...+...++
T Consensus 160 ~LD~~-------~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~----~~~d~i~~l~~g~i~~~~~~~~~ 218 (237)
T TIGR00968 160 ALDAK-------VRKELRSWLRKLHDEVHVTTVFVTHDQEEAM----EVADRIVVMSNGKIEQIGSPDEV 218 (237)
T ss_pred cCCHH-------HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH----hhcCEEEEEECCEEEEecCHHHH
Confidence 99973 234444444444444 899999999998876 77888888999888766665555
No 168
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=7e-22 Score=199.49 Aligned_cols=196 Identities=18% Similarity=0.233 Sum_probs=153.1
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC---C---CeeEEEECCccc--------
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM---P---SIAVISMDNYND-------- 102 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl---P---~sGvI~lDg~~~-------- 102 (621)
...+++++.++...+++++||++.+|+ ++||+|+||||||||+++|+|+. | ..|.|.++|...
T Consensus 6 l~~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14255 6 ITSSDVHLFYGKFEALKGIDLDFNQNE---ITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV 82 (252)
T ss_pred EEEEeEEEEECCeeEEecceEEEcCCC---EEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence 346788888888889999999999999 99999999999999999999985 3 389999998632
Q ss_pred -ccccccccCCCCcccccchHHHHHHHHhc--C--CC-------------ccC-----ccccccccCccCCceeecCCcc
Q 038045 103 -SSRVVDGNFDDPRLTDYDTLLENVRDLRE--G--KP-------------VQV-----PIYDFESSSRTGYRTVEVPSSR 159 (621)
Q Consensus 103 -~~R~Ig~vfQdp~l~d~~tV~enL~~L~~--g--k~-------------V~~-----p~yd~~~~~rsggq~qrVa~Ar 159 (621)
..+.++|++|++.+++ .++.+|+..... + .. +.. ...+.....+|+|+++++..++
T Consensus 83 ~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~lar 161 (252)
T PRK14255 83 QLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIAR 161 (252)
T ss_pred HhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHH
Confidence 1246899999999888 699999975321 1 00 000 1123445788999999999999
Q ss_pred EEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeecc
Q 038045 160 IVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETME 239 (621)
Q Consensus 160 VLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~ 239 (621)
+++.+|.++++|||++.||.. ..+.+.++.+.+.+ +.|++.++|+.+... ..+|++.++.+|.+...+
T Consensus 162 al~~~p~llllDEPt~~LD~~-------~~~~l~~~l~~~~~-~~tii~vsH~~~~~~----~~~d~i~~l~~G~i~~~~ 229 (252)
T PRK14255 162 VLAVKPDVILLDEPTSALDPI-------SSTQIENMLLELRD-QYTIILVTHSMHQAS----RISDKTAFFLTGNLIEFA 229 (252)
T ss_pred HHhcCCCEEEEcCCCccCCHH-------HHHHHHHHHHHHHh-CCEEEEEECCHHHHH----HhCCEEEEEECCEEEEeC
Confidence 999999999999999999973 23444555555544 579999999998876 677888889999887776
Q ss_pred CceeEEecC
Q 038045 240 QTYDIYLLP 248 (621)
Q Consensus 240 ~~aDIYi~P 248 (621)
...+++..|
T Consensus 230 ~~~~~~~~~ 238 (252)
T PRK14255 230 DTKQMFLNP 238 (252)
T ss_pred CHHHHhcCC
Confidence 666665433
No 169
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=5e-22 Score=200.29 Aligned_cols=192 Identities=14% Similarity=0.196 Sum_probs=150.7
Q ss_pred eecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC----CCeeEEEECCccc-------cccc
Q 038045 38 IQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM----PSIAVISMDNYND-------SSRV 106 (621)
Q Consensus 38 v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl----P~sGvI~lDg~~~-------~~R~ 106 (621)
..+++++.++...+++++||++++|+ ++||+||||||||||+++|+|++ |..|.|.++|... .++.
T Consensus 4 ~~~~l~~~~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 80 (246)
T PRK14269 4 KTTNLNLFYGKKQALFDINMQIEQNK---ITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKN 80 (246)
T ss_pred eeeeeEEEECCEeeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhh
Confidence 35678888888889999999999999 99999999999999999999986 4799999998632 1346
Q ss_pred ccccCCCCcccccchHHHHHHHHhc--C-----C-----------CccCc-----cccccccCccCCceeecCCccEEEE
Q 038045 107 VDGNFDDPRLTDYDTLLENVRDLRE--G-----K-----------PVQVP-----IYDFESSSRTGYRTVEVPSSRIVII 163 (621)
Q Consensus 107 Ig~vfQdp~l~d~~tV~enL~~L~~--g-----k-----------~V~~p-----~yd~~~~~rsggq~qrVa~ArVLIv 163 (621)
++|+||++.+|+ .++.+|+.+... + . .+.+. ..+.....+|+|+++++..+++++.
T Consensus 81 i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 159 (246)
T PRK14269 81 VGMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAI 159 (246)
T ss_pred EEEEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 899999999987 699999975321 1 0 01111 1233446789999999999999999
Q ss_pred ecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCcee
Q 038045 164 EGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYD 243 (621)
Q Consensus 164 EG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aD 243 (621)
+|.++++|||++.+|+. ....+.++.+.+. .|.|++.++|+.+... ..+|++.++.+|.+...+...+
T Consensus 160 ~p~lllLDEP~~~LD~~-------~~~~l~~~l~~~~-~~~tiii~tH~~~~~~----~~~d~i~~l~~G~i~~~g~~~~ 227 (246)
T PRK14269 160 KPKLLLLDEPTSALDPI-------SSGVIEELLKELS-HNLSMIMVTHNMQQGK----RVADYTAFFHLGELIEFGESKE 227 (246)
T ss_pred CCCEEEEcCCcccCCHH-------HHHHHHHHHHHHh-CCCEEEEEecCHHHHH----hhCcEEEEEECCEEEEECCHHH
Confidence 99999999999999973 2233444444443 3889999999998876 6778888899998877766666
Q ss_pred EE
Q 038045 244 IY 245 (621)
Q Consensus 244 IY 245 (621)
++
T Consensus 228 ~~ 229 (246)
T PRK14269 228 FF 229 (246)
T ss_pred HH
Confidence 54
No 170
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=5.9e-22 Score=199.92 Aligned_cols=193 Identities=16% Similarity=0.191 Sum_probs=151.8
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhCC------CeeEEEECCccc--------
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFMP------SIAVISMDNYND-------- 102 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP------~sGvI~lDg~~~-------- 102 (621)
...++++|.++...+++++||++.+|+ +++|+|+||||||||+++|+|+++ ..|.|.++|...
T Consensus 5 l~~~~l~~~~~~~~~l~~~sl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~ 81 (251)
T PRK14251 5 ISAKDVHLSYGNYEALHGISLDFEEKE---LTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV 81 (251)
T ss_pred EEEEeeEEEECCeeeeeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence 346789998888899999999999999 999999999999999999999982 689999998632
Q ss_pred -ccccccccCCCCcccccchHHHHHHHHhc--C---C------------CccC-----ccccccccCccCCceeecCCcc
Q 038045 103 -SSRVVDGNFDDPRLTDYDTLLENVRDLRE--G---K------------PVQV-----PIYDFESSSRTGYRTVEVPSSR 159 (621)
Q Consensus 103 -~~R~Ig~vfQdp~l~d~~tV~enL~~L~~--g---k------------~V~~-----p~yd~~~~~rsggq~qrVa~Ar 159 (621)
.++.++|++|++.+|+ .++.+|+..... + . .+.+ ...+.....+|+|+++++..++
T Consensus 82 ~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~lar 160 (251)
T PRK14251 82 ELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIAR 160 (251)
T ss_pred HhhccEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHH
Confidence 1345899999998886 699999975321 0 0 0011 0123445678999999999999
Q ss_pred EEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeecc
Q 038045 160 IVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETME 239 (621)
Q Consensus 160 VLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~ 239 (621)
+++.+|.++++|||++.||+. ..+.+..+.+.+. .+.|++.++|+.+... .++|++.++.+|.+...+
T Consensus 161 al~~~p~llllDEP~~~LD~~-------~~~~l~~~l~~~~-~~~tiiiisH~~~~~~----~~~d~i~~l~~G~i~~~~ 228 (251)
T PRK14251 161 ALAVRPKVVLLDEPTSALDPI-------SSSEIEETLMELK-HQYTFIMVTHNLQQAG----RISDQTAFLMNGDLIEAG 228 (251)
T ss_pred HHhcCCCEEEecCCCccCCHH-------HHHHHHHHHHHHH-cCCeEEEEECCHHHHH----hhcCEEEEEECCEEEEeC
Confidence 999999999999999999973 2334444444443 3689999999999876 677888889999887777
Q ss_pred CceeEE
Q 038045 240 QTYDIY 245 (621)
Q Consensus 240 ~~aDIY 245 (621)
...+++
T Consensus 229 ~~~~~~ 234 (251)
T PRK14251 229 PTEEMF 234 (251)
T ss_pred CHHHHH
Confidence 766664
No 171
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=4e-22 Score=196.59 Aligned_cols=179 Identities=16% Similarity=0.130 Sum_probs=141.2
Q ss_pred ceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-----------cccccc
Q 038045 41 PLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-----------SSRVVD 108 (621)
Q Consensus 41 ~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-----------~~R~Ig 108 (621)
++++.||.+.+ ++||++++ + ++||+||||||||||+++|+|++ |..|.|.++|... ..+.++
T Consensus 5 ~l~~~~~~~~~--~vsl~i~~-e---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 78 (214)
T cd03297 5 DIEKRLPDFTL--KIDFDLNE-E---VTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIG 78 (214)
T ss_pred eeeEecCCeee--CceEEEcc-e---eEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEE
Confidence 67888888766 99999999 9 99999999999999999999999 8999999998531 124689
Q ss_pred ccCCCCcccccchHHHHHHHHhcC--------------CCccCc-cccccccCccCCceeecCCccEEEEecceeccccc
Q 038045 109 GNFDDPRLTDYDTLLENVRDLREG--------------KPVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKL 173 (621)
Q Consensus 109 ~vfQdp~l~d~~tV~enL~~L~~g--------------k~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp 173 (621)
|++|++.+++..++.+|+...... +.+.+. ..+.....+|+|+++++..+++++.+|.++++|||
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP 158 (214)
T cd03297 79 LVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEP 158 (214)
T ss_pred EEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 999999999889999998753211 011111 12344578899999999999999999999999999
Q ss_pred cCCCCeeEEecCCchHHHHHHHHHHHHH-cCCCceehHhHHHHHhccccccchhhhcCCCCcee
Q 038045 174 RPLLDLRVSVTGGVHFDLVKRVLRDIQR-VGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTE 236 (621)
Q Consensus 174 ~s~LDlkV~Vd~~~d~~LirRI~Rdl~e-rG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie 236 (621)
++.||.. ..+.+.++.+.+.+ .|.|++.++|+.+... ..+|++.++..|.+.
T Consensus 159 t~~LD~~-------~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~----~~~d~i~~l~~G~i~ 211 (214)
T cd03297 159 FSALDRA-------LRLQLLPELKQIKKNLNIPVIFVTHDLSEAE----YLADRIVVMEDGRLQ 211 (214)
T ss_pred cccCCHH-------HHHHHHHHHHHHHHHcCcEEEEEecCHHHHH----HhcCEEEEEECCEEE
Confidence 9999973 23455555555544 4899999999998876 566777777776553
No 172
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.85 E-value=7.6e-22 Score=201.84 Aligned_cols=193 Identities=15% Similarity=0.181 Sum_probs=153.5
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-C-----CeeEEEECCcccc-------
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-P-----SIAVISMDNYNDS------- 103 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P-----~sGvI~lDg~~~~------- 103 (621)
...+++++.++...+|+++||++.+|+ ++||+||||||||||+++|+|++ | ..|.|.+||....
T Consensus 21 l~~~nl~~~~~~~~il~~vsl~i~~Ge---~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 97 (267)
T PRK14237 21 LSTKDLHVYYGKKEAIKGIDMQFEKNK---ITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVY 97 (267)
T ss_pred EEEeeEEEEECCeeeEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChH
Confidence 457788888888899999999999999 99999999999999999999998 3 6899999986421
Q ss_pred --cccccccCCCCcccccchHHHHHHHHhc--CC---------------CccC-----ccccccccCccCCceeecCCcc
Q 038045 104 --SRVVDGNFDDPRLTDYDTLLENVRDLRE--GK---------------PVQV-----PIYDFESSSRTGYRTVEVPSSR 159 (621)
Q Consensus 104 --~R~Ig~vfQdp~l~d~~tV~enL~~L~~--gk---------------~V~~-----p~yd~~~~~rsggq~qrVa~Ar 159 (621)
++.++|+||++.+|+ .++.+|+..... +. ...+ ...+.....+|+|+++++..++
T Consensus 98 ~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~lar 176 (267)
T PRK14237 98 EMRKHIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIAR 176 (267)
T ss_pred HHhcceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHH
Confidence 346899999998887 599999976321 10 0001 0123445788999999999999
Q ss_pred EEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeecc
Q 038045 160 IVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETME 239 (621)
Q Consensus 160 VLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~ 239 (621)
+++.+|.++++|||++.||+. ....+..+.+.+. .+.+++.++|+.+... .++|++.++.+|.+...+
T Consensus 177 al~~~p~lllLDEPt~~LD~~-------~~~~l~~~l~~~~-~~~tiii~tH~~~~~~----~~~d~i~~l~~G~i~~~g 244 (267)
T PRK14237 177 AIAVKPDILLMDEPASALDPI-------STMQLEETMFELK-KNYTIIIVTHNMQQAA----RASDYTAFFYLGDLIEYD 244 (267)
T ss_pred HHhcCCCEEEEeCCcccCCHH-------HHHHHHHHHHHHh-cCCEEEEEecCHHHHH----HhcCEEEEEECCEEEEeC
Confidence 999999999999999999973 2344445555554 3789999999998876 778888899999888777
Q ss_pred CceeEE
Q 038045 240 QTYDIY 245 (621)
Q Consensus 240 ~~aDIY 245 (621)
...+++
T Consensus 245 ~~~~~~ 250 (267)
T PRK14237 245 KTRNIF 250 (267)
T ss_pred CHHHHh
Confidence 776663
No 173
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=6e-22 Score=202.33 Aligned_cols=192 Identities=17% Similarity=0.194 Sum_probs=150.8
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC------CCeeEEEECCccc--------
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM------PSIAVISMDNYND-------- 102 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl------P~sGvI~lDg~~~-------- 102 (621)
...+++++.++...+++++||++++|+ ++||+|+||||||||+++|+|+. |+.|.|.++|...
T Consensus 22 l~~~~l~~~~~~~~il~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (268)
T PRK14248 22 LEVKDLSIYYGEKRAVNDISMDIEKHA---VTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVV 98 (268)
T ss_pred EEEEEEEEEeCCceeeeceEEEEcCCC---EEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHH
Confidence 457789998888889999999999999 99999999999999999999974 3789999998632
Q ss_pred -ccccccccCCCCcccccchHHHHHHHHhc--CC---C------------ccC-----ccccccccCccCCceeecCCcc
Q 038045 103 -SSRVVDGNFDDPRLTDYDTLLENVRDLRE--GK---P------------VQV-----PIYDFESSSRTGYRTVEVPSSR 159 (621)
Q Consensus 103 -~~R~Ig~vfQdp~l~d~~tV~enL~~L~~--gk---~------------V~~-----p~yd~~~~~rsggq~qrVa~Ar 159 (621)
..+.++|+||++.+|+. ++.+|+..... +. . ... ...+.....+|+|+++++..++
T Consensus 99 ~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~lar 177 (268)
T PRK14248 99 NLRREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIAR 177 (268)
T ss_pred HHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHH
Confidence 13468999999988874 99999875321 10 0 000 1123445778999999999999
Q ss_pred EEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeecc
Q 038045 160 IVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETME 239 (621)
Q Consensus 160 VLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~ 239 (621)
+++.+|.++++|||++.||+. ..+.+..+.+.+.+ +.|++.++|+..... ..+|++.++++|.+...+
T Consensus 178 al~~~p~lllLDEPt~~LD~~-------~~~~l~~~l~~~~~-~~tiii~tH~~~~~~----~~~d~v~~l~~G~i~~~~ 245 (268)
T PRK14248 178 TLAMKPAVLLLDEPASALDPI-------SNAKIEELITELKE-EYSIIIVTHNMQQAL----RVSDRTAFFLNGDLVEYD 245 (268)
T ss_pred HHhCCCCEEEEcCCCcccCHH-------HHHHHHHHHHHHhc-CCEEEEEEeCHHHHH----HhCCEEEEEECCEEEEeC
Confidence 999999999999999999973 23445555555544 689999999998876 677888888888887666
Q ss_pred CceeE
Q 038045 240 QTYDI 244 (621)
Q Consensus 240 ~~aDI 244 (621)
...++
T Consensus 246 ~~~~~ 250 (268)
T PRK14248 246 QTEQI 250 (268)
T ss_pred CHHHH
Confidence 65554
No 174
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=4.7e-22 Score=198.17 Aligned_cols=188 Identities=19% Similarity=0.203 Sum_probs=144.3
Q ss_pred ecceeeeeCcE--EEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-------cccccc
Q 038045 39 QDPLSFEKGFF--VVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-------SSRVVD 108 (621)
Q Consensus 39 ~~~lsf~~G~~--~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-------~~R~Ig 108 (621)
.+++++.++.. .++++++|++++|+ ++||+||||||||||+++|+|++ |..|.|.++|... ..+.++
T Consensus 3 ~~~l~~~~~~~~~~~l~~i~~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 3 FKNVTFRYPGDGPPVLRDISLDIPAGE---TVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred EEEEEEEeCCCCccceeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 35666666543 79999999999999 99999999999999999999999 8999999998632 134689
Q ss_pred ccCCCCcccccchHHHHHHHHhcCCC----------ccC------------ccccccccCccCCceeecCCccEEEEecc
Q 038045 109 GNFDDPRLTDYDTLLENVRDLREGKP----------VQV------------PIYDFESSSRTGYRTVEVPSSRIVIIEGI 166 (621)
Q Consensus 109 ~vfQdp~l~d~~tV~enL~~L~~gk~----------V~~------------p~yd~~~~~rsggq~qrVa~ArVLIvEG~ 166 (621)
|+||++.+++ .++.+|+........ ... ...+.....+|+|+++++..+++++.+|.
T Consensus 80 ~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 158 (234)
T cd03251 80 LVSQDVFLFN-DTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPP 158 (234)
T ss_pred EeCCCCeecc-ccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999998886 699999975322100 000 01123356789999999999999999999
Q ss_pred eeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCcee
Q 038045 167 YALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYD 243 (621)
Q Consensus 167 lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aD 243 (621)
++++|||++.||+. ..+.+.++.+.+. +|.|++.++|+++... . +|++.++++|.+...+...+
T Consensus 159 lllLDEP~~~LD~~-------~~~~l~~~l~~~~-~~~tii~~sh~~~~~~----~-~d~v~~l~~G~i~~~~~~~~ 222 (234)
T cd03251 159 ILILDEATSALDTE-------SERLVQAALERLM-KNRTTFVIAHRLSTIE----N-ADRIVVLEDGKIVERGTHEE 222 (234)
T ss_pred EEEEeCccccCCHH-------HHHHHHHHHHHhc-CCCEEEEEecCHHHHh----h-CCEEEEecCCeEeeeCCHHH
Confidence 99999999999972 2344445555544 4889999999998775 4 78888888887765544433
No 175
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=5.9e-22 Score=198.14 Aligned_cols=192 Identities=23% Similarity=0.243 Sum_probs=153.1
Q ss_pred ecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-----ccccccccCC
Q 038045 39 QDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-----SSRVVDGNFD 112 (621)
Q Consensus 39 ~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-----~~R~Ig~vfQ 112 (621)
.+++++.++.+.++++++|++++|+ ++||+|+||||||||+++|+|++ |..|.|.++|... ..+.++|++|
T Consensus 3 ~~~l~~~~~~~~il~~i~~~i~~Ge---~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 79 (232)
T cd03300 3 LENVSKFYGGFVALDGVSLDIKEGE---FFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQ 79 (232)
T ss_pred EEeEEEEeCCeeeeccceEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEec
Confidence 4678888888889999999999999 99999999999999999999999 8999999998632 2356899999
Q ss_pred CCcccccchHHHHHHHHhc--C--------------CCccC-ccccccccCccCCceeecCCccEEEEecceeccccccC
Q 038045 113 DPRLTDYDTLLENVRDLRE--G--------------KPVQV-PIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRP 175 (621)
Q Consensus 113 dp~l~d~~tV~enL~~L~~--g--------------k~V~~-p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s 175 (621)
++.+|+..++.+|+.+... + +.+.+ +..+......|+|+++++..+++++.+|.++++|||+.
T Consensus 80 ~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~ 159 (232)
T cd03300 80 NYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLG 159 (232)
T ss_pred ccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999988899999875321 0 00111 12334457789999999999999999999999999999
Q ss_pred CCCeeEEecCCchHHHHHHHHHHHHH-cCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 176 LLDLRVSVTGGVHFDLVKRVLRDIQR-VGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 176 ~LDlkV~Vd~~~d~~LirRI~Rdl~e-rG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
.||.. ..+.+.++.+.+.+ .|.|++.++|+.+... .++|++.++++|.+...+...++
T Consensus 160 gLD~~-------~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~----~~~d~i~~l~~G~~~~~~~~~~~ 218 (232)
T cd03300 160 ALDLK-------LRKDMQLELKRLQKELGITFVFVTHDQEEAL----TMSDRIAVMNKGKIQQIGTPEEI 218 (232)
T ss_pred cCCHH-------HHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH----HhcCEEEEEECCEEEecCCHHHH
Confidence 99973 33455555555544 4899999999998876 67788888888887766655554
No 176
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.85 E-value=7.7e-22 Score=194.68 Aligned_cols=184 Identities=18% Similarity=0.237 Sum_probs=141.9
Q ss_pred ecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-----ccccccccCC
Q 038045 39 QDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-----SSRVVDGNFD 112 (621)
Q Consensus 39 ~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-----~~R~Ig~vfQ 112 (621)
.+++++.++. ++.++||++.+|+ ++||+||||||||||+++|+|++ |..|.|.++|... ..+.++|+||
T Consensus 3 ~~~l~~~~~~--~~~~~s~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q 77 (213)
T TIGR01277 3 LDKVRYEYEH--LPMEFDLNVADGE---IVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQ 77 (213)
T ss_pred EEeeeEEeCC--cceeeEEEEeCCc---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEec
Confidence 4566776653 4679999999999 99999999999999999999999 8999999998632 2356899999
Q ss_pred CCcccccchHHHHHHHHh-cCC---------------CccC-ccccccccCccCCceeecCCccEEEEecceeccccccC
Q 038045 113 DPRLTDYDTLLENVRDLR-EGK---------------PVQV-PIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRP 175 (621)
Q Consensus 113 dp~l~d~~tV~enL~~L~-~gk---------------~V~~-p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s 175 (621)
++.+|+..++.+|+.... ... .+.+ ...+.....+|+|+++++..+++++.+|.++++|||+.
T Consensus 78 ~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~ 157 (213)
T TIGR01277 78 ENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFS 157 (213)
T ss_pred cCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 999999899999997532 110 0111 11234457889999999999999999999999999999
Q ss_pred CCCeeEEecCCchHHHHHHHHHHH-HHcCCCceehHhHHHHHhccccccchhhhcCCCCceeec
Q 038045 176 LLDLRVSVTGGVHFDLVKRVLRDI-QRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETM 238 (621)
Q Consensus 176 ~LDlkV~Vd~~~d~~LirRI~Rdl-~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~ 238 (621)
.+|.. ..+.+..+.+.+ ++.|.|++.++|+.+... ..+|++.++.+|.+...
T Consensus 158 ~LD~~-------~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~----~~~d~v~~l~~g~i~~~ 210 (213)
T TIGR01277 158 ALDPL-------LREEMLALVKQLCSERQRTLLMVTHHLSDAR----AIASQIAVVSQGKIKVV 210 (213)
T ss_pred cCCHH-------HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH----hhcCeEEEEECCeEEEe
Confidence 99973 233444444444 345899999999998876 56677777777766443
No 177
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=8.6e-22 Score=193.68 Aligned_cols=179 Identities=12% Similarity=0.020 Sum_probs=138.9
Q ss_pred eecceeeeeC----cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC----CCeeEEEECCccc------c
Q 038045 38 IQDPLSFEKG----FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM----PSIAVISMDNYND------S 103 (621)
Q Consensus 38 v~~~lsf~~G----~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl----P~sGvI~lDg~~~------~ 103 (621)
-.++++|.++ .+.++++++|++++|+ +++|+||||||||||+++|+|++ |..|.|.++|... .
T Consensus 5 ~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~ 81 (202)
T cd03233 5 SWRNISFTTGKGRSKIPILKDFSGVVKPGE---MVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKY 81 (202)
T ss_pred EEEccEEEeccCCCCceeeeeEEEEECCCc---EEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhh
Confidence 4567777773 6689999999999999 99999999999999999999997 3689999998632 2
Q ss_pred cccccccCCCCcccccchHHHHHHHHhcCCCccCccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEe
Q 038045 104 SRVVDGNFDDPRLTDYDTLLENVRDLREGKPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSV 183 (621)
Q Consensus 104 ~R~Ig~vfQdp~l~d~~tV~enL~~L~~gk~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~V 183 (621)
.+.++|++|++..++..++.+|+.+..... .+.....+|+|+++++..+++++.+|.++++|||++.+|..
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~------~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~--- 152 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRCK------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSS--- 152 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhhc------cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHH---
Confidence 346899999998999999999998643211 34455778999999999999999999999999999999973
Q ss_pred cCCchHHHHHHHHHHHHHc-CCCceeh-HhHHHHHhccccccchhhhcCCCCcee
Q 038045 184 TGGVHFDLVKRVLRDIQRV-GQEPEEI-IQQISETSAKNLSVDQIKAVYPEGHTE 236 (621)
Q Consensus 184 d~~~d~~LirRI~Rdl~er-G~Ti~~V-tHd~eea~~R~v~~~d~iavl~eg~Ie 236 (621)
..+.+..+.+.+.+. +.+++.+ +|+.++.. ..+|++.++.+|.+.
T Consensus 153 ----~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~----~~~d~i~~l~~G~i~ 199 (202)
T cd03233 153 ----TALEILKCIRTMADVLKTTTFVSLYQASDEIY----DLFDKVLVLYEGRQI 199 (202)
T ss_pred ----HHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHH----HhCCeEEEEECCEEE
Confidence 234444555554443 6665554 55555554 556777777777654
No 178
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.85 E-value=8.2e-22 Score=193.35 Aligned_cols=173 Identities=16% Similarity=0.151 Sum_probs=141.5
Q ss_pred ecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhh--C-CCeeEEEECCcccc--------cccc
Q 038045 39 QDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNF--M-PSIAVISMDNYNDS--------SRVV 107 (621)
Q Consensus 39 ~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagL--l-P~sGvI~lDg~~~~--------~R~I 107 (621)
.+++++.++...+++++||++.+|+ +++|+|+||||||||+++|+|+ . |..|.|.+||.... ++.+
T Consensus 3 ~~~l~~~~~~~~~l~~is~~i~~Ge---~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (200)
T cd03217 3 IKDLHVSVGGKEILKGVNLTIKKGE---VHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGI 79 (200)
T ss_pred EEEEEEEeCCEEeeeccceEECCCc---EEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcE
Confidence 4577787777789999999999999 9999999999999999999998 4 79999999986321 1248
Q ss_pred cccCCCCcccccchHHHHHHHHhcCCCccCccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCc
Q 038045 108 DGNFDDPRLTDYDTLLENVRDLREGKPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGV 187 (621)
Q Consensus 108 g~vfQdp~l~d~~tV~enL~~L~~gk~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~ 187 (621)
+|++|++.+++..++.+++.. ....+|+|+++++..+++++.+|.++++|||++.||..
T Consensus 80 ~~v~q~~~~~~~~~~~~~l~~--------------~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~------- 138 (200)
T cd03217 80 FLAFQYPPEIPGVKNADFLRY--------------VNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDID------- 138 (200)
T ss_pred EEeecChhhccCccHHHHHhh--------------ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHH-------
Confidence 999999999988888887721 12468999999999999999999999999999999962
Q ss_pred hHHHHHHHHHHHHHcCCCceehHhHHHHHhccccc-cchhhhcCCCCceeecc
Q 038045 188 HFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLS-VDQIKAVYPEGHTETME 239 (621)
Q Consensus 188 d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~-~~d~iavl~eg~Ie~~~ 239 (621)
..+.+..+.+.+.+.|.|++.++|+++... . ++|++.++++|.+...+
T Consensus 139 ~~~~l~~~L~~~~~~~~tiii~sh~~~~~~----~~~~d~i~~l~~G~i~~~~ 187 (200)
T cd03217 139 ALRLVAEVINKLREEGKSVLIITHYQRLLD----YIKPDRVHVLYDGRIVKSG 187 (200)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEecCHHHHH----HhhCCEEEEEECCEEEEEc
Confidence 234445555555566899999999998765 5 57888888888765543
No 179
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.85 E-value=8.9e-22 Score=194.80 Aligned_cols=171 Identities=19% Similarity=0.163 Sum_probs=139.3
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc----ccccccccC
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND----SSRVVDGNF 111 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~----~~R~Ig~vf 111 (621)
...+++++.++...+++++||.+++|+ +++|+|+||||||||+++|+|++ |+.|.|.++|... ..+.++|++
T Consensus 12 l~~~~l~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~ 88 (214)
T PRK13543 12 LAAHALAFSRNEEPVFGPLDFHVDAGE---ALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLG 88 (214)
T ss_pred EEEeeEEEecCCceeeecceEEECCCC---EEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEee
Confidence 456788888887889999999999999 99999999999999999999999 8999999998642 234589999
Q ss_pred CCCcccccchHHHHHHHHhc--CC-----------CccCc-cccccccCccCCceeecCCccEEEEecceeccccccCCC
Q 038045 112 DDPRLTDYDTLLENVRDLRE--GK-----------PVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLL 177 (621)
Q Consensus 112 Qdp~l~d~~tV~enL~~L~~--gk-----------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~L 177 (621)
|++.+++..++.+|+..... +. .+.++ ..+.....+|+|+++++..+++++.+|.++++|||++.|
T Consensus 89 q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~L 168 (214)
T PRK13543 89 HLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANL 168 (214)
T ss_pred cCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 99988888899999865321 10 01111 234456788999999999999999999999999999999
Q ss_pred CeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHh
Q 038045 178 DLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETS 217 (621)
Q Consensus 178 DlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~ 217 (621)
|+. ..+.+..+.+.+.+.|.|++.++|+.+...
T Consensus 169 D~~-------~~~~l~~~l~~~~~~~~tiii~sH~~~~~~ 201 (214)
T PRK13543 169 DLE-------GITLVNRMISAHLRGGGAALVTTHGAYAAP 201 (214)
T ss_pred CHH-------HHHHHHHHHHHHHhCCCEEEEEecChhhhh
Confidence 973 345666666666667899999999998775
No 180
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.85 E-value=4.2e-22 Score=191.63 Aligned_cols=164 Identities=18% Similarity=0.172 Sum_probs=132.6
Q ss_pred ecceeeeeCcE--EEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc------ccccccc
Q 038045 39 QDPLSFEKGFF--VVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND------SSRVVDG 109 (621)
Q Consensus 39 ~~~lsf~~G~~--~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~------~~R~Ig~ 109 (621)
.+++++.++.. .+++++||++++|+ +++|+||||||||||+++|+|+. |..|.|.++|... .++.++|
T Consensus 3 ~~~~~~~~~~~~~~~l~~i~~~i~~Ge---~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (178)
T cd03247 3 INNVSFSYPEQEQQVLKNLSLELKQGE---KIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISV 79 (178)
T ss_pred EEEEEEEeCCCCccceEEEEEEEcCCC---EEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEE
Confidence 35666766543 69999999999999 99999999999999999999998 8999999998632 2356899
Q ss_pred cCCCCcccccchHHHHHHHHhcCCCccCccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchH
Q 038045 110 NFDDPRLTDYDTLLENVRDLREGKPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHF 189 (621)
Q Consensus 110 vfQdp~l~d~~tV~enL~~L~~gk~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~ 189 (621)
++|++.+++ .++.+|+ ...+|+|+++++..+++++.+|.++++|||++.||.. ..
T Consensus 80 ~~q~~~~~~-~tv~~~i-----------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~-------~~ 134 (178)
T cd03247 80 LNQRPYLFD-TTLRNNL-----------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPI-------TE 134 (178)
T ss_pred EccCCeeec-ccHHHhh-----------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHH-------HH
Confidence 999998876 6898887 3568999999999999999999999999999999973 23
Q ss_pred HHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCcee
Q 038045 190 DLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTE 236 (621)
Q Consensus 190 ~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie 236 (621)
+.+.++.+.+. .+.|++.++|+.+... .+|++.++.+|.+.
T Consensus 135 ~~l~~~l~~~~-~~~tii~~sh~~~~~~-----~~d~~~~l~~g~i~ 175 (178)
T cd03247 135 RQLLSLIFEVL-KDKTLIWITHHLTGIE-----HMDKILFLENGKII 175 (178)
T ss_pred HHHHHHHHHHc-CCCEEEEEecCHHHHH-----hCCEEEEEECCEEE
Confidence 34444444443 4889999999988753 35666677766554
No 181
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.85 E-value=1e-21 Score=217.12 Aligned_cols=190 Identities=14% Similarity=0.110 Sum_probs=151.6
Q ss_pred eecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-C--CeeEEEECCccc--------cccc
Q 038045 38 IQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-P--SIAVISMDNYND--------SSRV 106 (621)
Q Consensus 38 v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P--~sGvI~lDg~~~--------~~R~ 106 (621)
..+++++.|+...+++++||++++|+ ++||+||||||||||+++|+|++ | ..|.|.++|... .++.
T Consensus 3 ~i~~l~~~~~~~~il~~isl~i~~Ge---~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (500)
T TIGR02633 3 EMKGIVKTFGGVKALDGIDLEVRPGE---CVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG 79 (500)
T ss_pred EEEeEEEEeCCeEeecceEEEEeCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence 35678888888889999999999999 99999999999999999999998 5 689999998632 1246
Q ss_pred ccccCCCCcccccchHHHHHHHHhc----C--C--------------CccCccc--cccccCccCCceeecCCccEEEEe
Q 038045 107 VDGNFDDPRLTDYDTLLENVRDLRE----G--K--------------PVQVPIY--DFESSSRTGYRTVEVPSSRIVIIE 164 (621)
Q Consensus 107 Ig~vfQdp~l~d~~tV~enL~~L~~----g--k--------------~V~~p~y--d~~~~~rsggq~qrVa~ArVLIvE 164 (621)
++|+||++.+++..++.+|+.+... + . .+.+..+ +.....+|+|++|++..+++++.+
T Consensus 80 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~ 159 (500)
T TIGR02633 80 IVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQ 159 (500)
T ss_pred EEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhC
Confidence 8999999999999999999976321 0 0 0111111 233578999999999999999999
Q ss_pred cceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCc
Q 038045 165 GIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQT 241 (621)
Q Consensus 165 G~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~ 241 (621)
|.++++|||++.||+. ....+..+.+.+.+.|.|++.++|+.+... .++|++.++++|.+...+..
T Consensus 160 p~lllLDEPt~~LD~~-------~~~~l~~~l~~l~~~g~tviiitHd~~~~~----~~~d~i~~l~~G~i~~~~~~ 225 (500)
T TIGR02633 160 ARLLILDEPSSSLTEK-------ETEILLDIIRDLKAHGVACVYISHKLNEVK----AVCDTICVIRDGQHVATKDM 225 (500)
T ss_pred CCEEEEeCCCCCCCHH-------HHHHHHHHHHHHHhCCCEEEEEeCcHHHHH----HhCCEEEEEeCCeEeeecCc
Confidence 9999999999999973 334555555556677999999999999887 67788888888877654443
No 182
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.85 E-value=6.5e-22 Score=199.82 Aligned_cols=195 Identities=14% Similarity=0.089 Sum_probs=147.7
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcc-----cc-------
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYN-----DS------- 103 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~-----~~------- 103 (621)
...+++++.++...+++++||++++|+ +++|+||||||||||+++|+|++ |..|.|.++|.. ..
T Consensus 4 l~~~~l~~~~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (253)
T TIGR02323 4 LQVSGLSKSYGGGKGCRDVSFDLYPGE---VLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80 (253)
T ss_pred EEEeeeEEEeCCceEeecceEEEeCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHH
Confidence 346788888887789999999999999 99999999999999999999999 899999999753 11
Q ss_pred ----cccccccCCCCc--ccccchHHHHHHHHh---cC--------------CCccC--ccccccccCccCCceeecCCc
Q 038045 104 ----SRVVDGNFDDPR--LTDYDTLLENVRDLR---EG--------------KPVQV--PIYDFESSSRTGYRTVEVPSS 158 (621)
Q Consensus 104 ----~R~Ig~vfQdp~--l~d~~tV~enL~~L~---~g--------------k~V~~--p~yd~~~~~rsggq~qrVa~A 158 (621)
.+.++|++|++. .+...++.+++.... .. ..+.+ ...+.....+|+|+++++..+
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~la 160 (253)
T TIGR02323 81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIA 160 (253)
T ss_pred HHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHH
Confidence 135899999875 334456666664210 00 01111 123445678899999999999
Q ss_pred cEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHH-HHcCCCceehHhHHHHHhccccccchhhhcCCCCceee
Q 038045 159 RIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDI-QRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTET 237 (621)
Q Consensus 159 rVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl-~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~ 237 (621)
++++.+|.++++|||++.||+. ..+.+..+.+.+ .+.|.|++.++|+.+... ..+|++.++..|.+..
T Consensus 161 ral~~~p~vlllDEP~~~LD~~-------~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~----~~~d~~~~l~~G~i~~ 229 (253)
T TIGR02323 161 RNLVTRPRLVFMDEPTGGLDVS-------VQARLLDLLRGLVRDLGLAVIIVTHDLGVAR----LLAQRLLVMQQGRVVE 229 (253)
T ss_pred HHHhcCCCEEEEcCCCccCCHH-------HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH----HhcCEEEEEECCEEEE
Confidence 9999999999999999999973 234444444444 445899999999998876 5677888888888876
Q ss_pred ccCceeEE
Q 038045 238 MEQTYDIY 245 (621)
Q Consensus 238 ~~~~aDIY 245 (621)
.+...++.
T Consensus 230 ~~~~~~~~ 237 (253)
T TIGR02323 230 SGLTDQVL 237 (253)
T ss_pred ECCHHHHh
Confidence 66665553
No 183
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.85 E-value=6.1e-22 Score=202.72 Aligned_cols=182 Identities=14% Similarity=0.192 Sum_probs=142.9
Q ss_pred cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccccccccccCCCCcccccchHHHHH
Q 038045 48 FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDSSRVVDGNFDDPRLTDYDTLLENV 126 (621)
Q Consensus 48 ~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~~R~Ig~vfQdp~l~d~~tV~enL 126 (621)
...|+++|||++++|+ ++||+|.|||||||+.|+|.+++ |+.|.|.++|....... ..-....+.+.+
T Consensus 25 ~v~avd~Vsf~i~~ge---~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~--------~~~~~~~v~elL 93 (268)
T COG4608 25 YVKAVDGVSFSIKEGE---TLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS--------KEERRERVLELL 93 (268)
T ss_pred ceEEecceeEEEcCCC---EEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--------hhHHHHHHHHHH
Confidence 3689999999999999 99999999999999999999999 99999999986422111 000011122222
Q ss_pred HHHhcCCCccCccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCc
Q 038045 127 RDLREGKPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEP 206 (621)
Q Consensus 127 ~~L~~gk~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti 206 (621)
.... .....+.+.+++.||||.||+.+||+++++|.++++|||.++||..+ ....+.-+.....+.|.+.
T Consensus 94 ~~Vg----l~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSi------qaqIlnLL~dlq~~~~lt~ 163 (268)
T COG4608 94 EKVG----LPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSV------QAQILNLLKDLQEELGLTY 163 (268)
T ss_pred HHhC----CCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhH------HHHHHHHHHHHHHHhCCeE
Confidence 2211 22224566678999999999999999999999999999999999754 2244444555556679999
Q ss_pred eehHhHHHHHhccccccchhhhcCCCCceeeccCceeEEecCCCCCcc
Q 038045 207 EEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIYLLPPGEDPE 254 (621)
Q Consensus 207 ~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIYi~P~~~~~e 254 (621)
++|+||+..+. .++|++++|+.|.+...+...++|-.|...+..
T Consensus 164 lFIsHDL~vv~----~isdri~VMy~G~iVE~g~~~~~~~~p~HpYTk 207 (268)
T COG4608 164 LFISHDLSVVR----YISDRIAVMYLGKIVEIGPTEEVFSNPLHPYTK 207 (268)
T ss_pred EEEEEEHHhhh----hhcccEEEEecCceeEecCHHHHhhCCCCHHHH
Confidence 99999999987 899999999999999999999998777766543
No 184
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.1e-21 Score=201.11 Aligned_cols=181 Identities=14% Similarity=0.172 Sum_probs=142.5
Q ss_pred eeeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC------CCeeEEEECCccc-------
Q 038045 36 VPIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM------PSIAVISMDNYND------- 102 (621)
Q Consensus 36 ~~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl------P~sGvI~lDg~~~------- 102 (621)
....+++++.++...+|+++||++++|+ +++|+||||||||||+++|+|++ |..|.|.++|...
T Consensus 13 ~l~i~nl~~~~~~~~il~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~ 89 (269)
T PRK14259 13 IISLQNVTISYGTFEAVKNVFCDIPRGK---VTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDP 89 (269)
T ss_pred eEEEEeEEEEECCEEEEcceEEEEcCCC---EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCH
Confidence 3456789999888889999999999999 99999999999999999999987 3789999998632
Q ss_pred --ccccccccCCCCcccccchHHHHHHHHhcCC---------------CccC-----ccccccccCccCCceeecCCccE
Q 038045 103 --SSRVVDGNFDDPRLTDYDTLLENVRDLREGK---------------PVQV-----PIYDFESSSRTGYRTVEVPSSRI 160 (621)
Q Consensus 103 --~~R~Ig~vfQdp~l~d~~tV~enL~~L~~gk---------------~V~~-----p~yd~~~~~rsggq~qrVa~ArV 160 (621)
.++.++|+||++.+|+ .++.+|+.+..... .+.. ...+.....+|+|+++++..+++
T Consensus 90 ~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~lara 168 (269)
T PRK14259 90 VEVRRRIGMVFQQPNPFP-KSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIART 168 (269)
T ss_pred HHHhhceEEEccCCccch-hhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHH
Confidence 1246899999998887 49999997532110 0000 01234456789999999999999
Q ss_pred EEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCC
Q 038045 161 VIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPE 232 (621)
Q Consensus 161 LIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~e 232 (621)
++.+|.++++|||++.||+. ..+.+..+.+.+.+ +.|++.++|+++... .++|++.++++
T Consensus 169 l~~~p~lllLDEPt~gLD~~-------~~~~l~~~l~~~~~-~~tiiivtH~~~~~~----~~~d~i~~l~~ 228 (269)
T PRK14259 169 IAIEPEVILMDEPCSALDPI-------STLKIEETMHELKK-NFTIVIVTHNMQQAV----RVSDMTAFFNA 228 (269)
T ss_pred HhcCCCEEEEcCCCccCCHH-------HHHHHHHHHHHHhc-CCEEEEEeCCHHHHH----HhcCEEEEEec
Confidence 99999999999999999973 23344445555543 789999999998886 67787778875
No 185
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.85 E-value=5.9e-22 Score=202.66 Aligned_cols=195 Identities=13% Similarity=0.177 Sum_probs=149.4
Q ss_pred eeecceeeeeC---------cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc---
Q 038045 37 PIQDPLSFEKG---------FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS--- 103 (621)
Q Consensus 37 ~v~~~lsf~~G---------~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~--- 103 (621)
...+++++.++ ...+++++||++++|+ +++|+||||||||||+++|+|++ |..|.|.++|....
T Consensus 5 l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge---~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~ 81 (267)
T PRK15112 5 LEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQ---TLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGD 81 (267)
T ss_pred EEEeceEEEecCCCCcccccccceeeeeeEEecCCC---EEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCc
Confidence 45677887775 2479999999999999 99999999999999999999999 89999999986321
Q ss_pred ----cccccccCCCCc--ccccchHHHHHHHHhc-C----------------CCccC-c-cccccccCccCCceeecCCc
Q 038045 104 ----SRVVDGNFDDPR--LTDYDTLLENVRDLRE-G----------------KPVQV-P-IYDFESSSRTGYRTVEVPSS 158 (621)
Q Consensus 104 ----~R~Ig~vfQdp~--l~d~~tV~enL~~L~~-g----------------k~V~~-p-~yd~~~~~rsggq~qrVa~A 158 (621)
.+.++|+||++. +++..++.+++..... . +.+.+ + ..+.....+|+|+++++..+
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la 161 (267)
T PRK15112 82 YSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLA 161 (267)
T ss_pred hhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHH
Confidence 235899999975 4667788877764211 0 01112 1 12334567899999999999
Q ss_pred cEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHH-cCCCceehHhHHHHHhccccccchhhhcCCCCceee
Q 038045 159 RIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQR-VGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTET 237 (621)
Q Consensus 159 rVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~e-rG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~ 237 (621)
++++.+|.++++|||++.||+. ..+.+..+.+.+.+ .|.|++.++|+.+... .++|++.++.+|.+..
T Consensus 162 ral~~~p~lllLDEPt~~LD~~-------~~~~l~~~l~~~~~~~g~tviivsH~~~~~~----~~~d~i~~l~~G~i~~ 230 (267)
T PRK15112 162 RALILRPKVIIADEALASLDMS-------MRSQLINLMLELQEKQGISYIYVTQHLGMMK----HISDQVLVMHQGEVVE 230 (267)
T ss_pred HHHHhCCCEEEEcCCcccCCHH-------HHHHHHHHHHHHHHHcCcEEEEEeCCHHHHH----HhcCEEEEEECCEEEe
Confidence 9999999999999999999972 23444444444443 5899999999998886 6778888888888876
Q ss_pred ccCceeEE
Q 038045 238 MEQTYDIY 245 (621)
Q Consensus 238 ~~~~aDIY 245 (621)
.+...+++
T Consensus 231 ~~~~~~~~ 238 (267)
T PRK15112 231 RGSTADVL 238 (267)
T ss_pred cCCHHHHh
Confidence 66666653
No 186
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=6.6e-22 Score=197.56 Aligned_cols=191 Identities=15% Similarity=0.194 Sum_probs=148.7
Q ss_pred eecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-----ccccccccC
Q 038045 38 IQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-----SSRVVDGNF 111 (621)
Q Consensus 38 v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-----~~R~Ig~vf 111 (621)
..+++++.++... .++||++.+|+ ++||+||||||||||+++|+|++ |..|.|.++|... ..+.++|+|
T Consensus 3 ~~~~l~~~~~~~~--~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~ 77 (232)
T PRK10771 3 KLTDITWLYHHLP--MRFDLTVERGE---RVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLF 77 (232)
T ss_pred EEEEEEEEECCcc--ceeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEe
Confidence 3567777776543 38999999999 99999999999999999999999 8999999998632 234689999
Q ss_pred CCCcccccchHHHHHHHHhc-C---C------------CccC-ccccccccCccCCceeecCCccEEEEecceecccccc
Q 038045 112 DDPRLTDYDTLLENVRDLRE-G---K------------PVQV-PIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLR 174 (621)
Q Consensus 112 Qdp~l~d~~tV~enL~~L~~-g---k------------~V~~-p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~ 174 (621)
|++.+++..++.+|+.+... . . .+.+ +..+.....+|+|+++++..+++++.+|.++++|||+
T Consensus 78 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~ 157 (232)
T PRK10771 78 QENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPF 157 (232)
T ss_pred cccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 99999998999999975321 1 0 0111 1234456789999999999999999999999999999
Q ss_pred CCCCeeEEecCCchHHHHHHHHHHHH-HcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 175 PLLDLRVSVTGGVHFDLVKRVLRDIQ-RVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 175 s~LDlkV~Vd~~~d~~LirRI~Rdl~-erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
..||.. ..+.+.++.+.+. +.|.|++.++|+.+... ..+|++.++.+|.+...++..++
T Consensus 158 ~gLD~~-------~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~----~~~d~i~~l~~g~i~~~g~~~~~ 217 (232)
T PRK10771 158 SALDPA-------LRQEMLTLVSQVCQERQLTLLMVSHSLEDAA----RIAPRSLVVADGRIAWDGPTDEL 217 (232)
T ss_pred ccCCHH-------HHHHHHHHHHHHHHhcCCEEEEEECCHHHHH----HhCCEEEEEECCEEEEeCCHHHH
Confidence 999973 2344445555543 45899999999999876 66777888888887766555554
No 187
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=8e-22 Score=199.19 Aligned_cols=195 Identities=16% Similarity=0.181 Sum_probs=152.8
Q ss_pred cceeeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhCC------CeeEEEECCccc-----
Q 038045 34 EIVPIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFMP------SIAVISMDNYND----- 102 (621)
Q Consensus 34 ~~~~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP------~sGvI~lDg~~~----- 102 (621)
++....++++|.++...++++++|++.+|+ +++|+|+||||||||+++|+|+.+ ..|.|.++|...
T Consensus 3 ~~~~~~~~l~~~~~~~~~l~~is~~i~~Ge---~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 79 (251)
T PRK14244 3 EIHASVKNLNLWYGSKQILFDINLDIYKRE---VTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79 (251)
T ss_pred ceEEEeeeEEEEECCeeeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhccc
Confidence 455667888888888889999999999999 999999999999999999999872 589999998631
Q ss_pred ----ccccccccCCCCcccccchHHHHHHHHh--cCC----------------CccCc-----cccccccCccCCceeec
Q 038045 103 ----SSRVVDGNFDDPRLTDYDTLLENVRDLR--EGK----------------PVQVP-----IYDFESSSRTGYRTVEV 155 (621)
Q Consensus 103 ----~~R~Ig~vfQdp~l~d~~tV~enL~~L~--~gk----------------~V~~p-----~yd~~~~~rsggq~qrV 155 (621)
.++.++|+||++.+++. ++.+|+.+.. .+. .+.+. ..+.....+|+|+++++
T Consensus 80 ~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv 158 (251)
T PRK14244 80 NVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRL 158 (251)
T ss_pred chHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHH
Confidence 13468999999988875 8999987532 110 01111 12234567899999999
Q ss_pred CCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCce
Q 038045 156 PSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHT 235 (621)
Q Consensus 156 a~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~I 235 (621)
..+++++.+|.++++|||++.||.. ..+.+.++.+.+. .|.|++.++|+.+... .++|++.+++.|.+
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~-------~~~~l~~~l~~~~-~~~tiiiisH~~~~~~----~~~d~i~~l~~G~i 226 (251)
T PRK14244 159 CIARAIAVKPTMLLMDEPCSALDPV-------ATNVIENLIQELK-KNFTIIVVTHSMKQAK----KVSDRVAFFQSGRI 226 (251)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHH-------HHHHHHHHHHHHh-cCCeEEEEeCCHHHHH----hhcCEEEEEECCEE
Confidence 9999999999999999999999973 2344555555554 4899999999999876 67788888988888
Q ss_pred eeccCceeE
Q 038045 236 ETMEQTYDI 244 (621)
Q Consensus 236 e~~~~~aDI 244 (621)
...+...++
T Consensus 227 ~~~~~~~~~ 235 (251)
T PRK14244 227 VEYNTTQEI 235 (251)
T ss_pred EEeCCHHHH
Confidence 766665555
No 188
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1e-21 Score=217.41 Aligned_cols=185 Identities=15% Similarity=0.100 Sum_probs=150.1
Q ss_pred eecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc--------cccccc
Q 038045 38 IQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND--------SSRVVD 108 (621)
Q Consensus 38 v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~--------~~R~Ig 108 (621)
..+++++.++...+++++||++++|+ ++||+||||||||||+++|+|++ |..|.|.++|... .++.++
T Consensus 6 ~~~~l~~~~~~~~il~~isl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 82 (501)
T PRK11288 6 SFDGIGKTFPGVKALDDISFDCRAGQ---VHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVA 82 (501)
T ss_pred EEeeeEEEECCEEEEeeeeEEEeCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEE
Confidence 45788888888889999999999999 99999999999999999999998 8999999998532 134689
Q ss_pred ccCCCCcccccchHHHHHHHHhc----CC---------------CccCc-cccccccCccCCceeecCCccEEEEeccee
Q 038045 109 GNFDDPRLTDYDTLLENVRDLRE----GK---------------PVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYA 168 (621)
Q Consensus 109 ~vfQdp~l~d~~tV~enL~~L~~----gk---------------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lL 168 (621)
|+||++.+++..++.+|+.+... +. .+.+. ..+.....+|+|++|++..+++++.+|.++
T Consensus 83 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~ll 162 (501)
T PRK11288 83 IIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVI 162 (501)
T ss_pred EEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 99999999999999999986321 10 01111 234456789999999999999999999999
Q ss_pred ccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCcee
Q 038045 169 LSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTE 236 (621)
Q Consensus 169 LlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie 236 (621)
++|||++.||+. ..+.+.++.+.+.+.|.|++.++|+++... ..+|++.++.+|.+.
T Consensus 163 lLDEPt~~LD~~-------~~~~l~~~l~~~~~~g~tiiiitHd~~~~~----~~~d~i~~l~~G~i~ 219 (501)
T PRK11288 163 AFDEPTSSLSAR-------EIEQLFRVIRELRAEGRVILYVSHRMEEIF----ALCDAITVFKDGRYV 219 (501)
T ss_pred EEcCCCCCCCHH-------HHHHHHHHHHHHHhCCCEEEEEeCCHHHHH----HhCCEEEEEECCEEE
Confidence 999999999973 234555555556667999999999998886 667777888888764
No 189
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=5e-22 Score=203.23 Aligned_cols=192 Identities=14% Similarity=0.158 Sum_probs=149.2
Q ss_pred eecceeeeeCc--EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-------ccccc
Q 038045 38 IQDPLSFEKGF--FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-------SSRVV 107 (621)
Q Consensus 38 v~~~lsf~~G~--~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-------~~R~I 107 (621)
..+++++.++. ..+++++||++++|+ +++|+||||||||||+++|+|++ |..|.|.++|... .++.+
T Consensus 9 ~i~~l~~~~~~~~~~~l~~isl~i~~Ge---~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 9 VFKNVSFQYQSDASFTLKDVSFNIPKGQ---WTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred EEEEEEEEcCCCCCcceeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 46678887764 459999999999999 99999999999999999999999 8999999999642 12468
Q ss_pred cccCCCCc-ccccchHHHHHHHHhcCC----------------CccC-ccccccccCccCCceeecCCccEEEEecceec
Q 038045 108 DGNFDDPR-LTDYDTLLENVRDLREGK----------------PVQV-PIYDFESSSRTGYRTVEVPSSRIVIIEGIYAL 169 (621)
Q Consensus 108 g~vfQdp~-l~d~~tV~enL~~L~~gk----------------~V~~-p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLL 169 (621)
+|+||++. .++..++.+|+.+..... .+.+ +..+.....+|+|+++++..+++++.+|.+++
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lll 165 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVII 165 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999985 566778888876532110 0111 22344567889999999999999999999999
Q ss_pred cccccCCCCeeEEecCCchHHHHHHHHHHHHH-cCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 170 SEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQR-VGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 170 lDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~e-rG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
+|||++.||.. ..+.+.++.+.+.+ .|.|++.++|+.+... . +|++.++.+|.+...+.+.++
T Consensus 166 LDEPt~~LD~~-------~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~----~-~d~i~~l~~G~i~~~g~~~~~ 229 (269)
T PRK13648 166 LDEATSMLDPD-------ARQNLLDLVRKVKSEHNITIISITHDLSEAM----E-ADHVIVMNKGTVYKEGTPTEI 229 (269)
T ss_pred EeCCcccCCHH-------HHHHHHHHHHHHHHhcCCEEEEEecCchHHh----c-CCEEEEEECCEEEEecCHHHH
Confidence 99999999973 23445555555544 4899999999988775 4 788888888888766665554
No 190
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=5.8e-22 Score=204.92 Aligned_cols=193 Identities=15% Similarity=0.198 Sum_probs=147.8
Q ss_pred eeecceeeeeCcE-----EEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc--------
Q 038045 37 PIQDPLSFEKGFF-----VVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-------- 102 (621)
Q Consensus 37 ~v~~~lsf~~G~~-----~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-------- 102 (621)
...+++++.++.. .+++++||++++|+ ++||+||||||||||+++|+|++ |..|.|.++|...
T Consensus 7 l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 7 IILDNVSYTYAKKTPFEFKALNNTSLTFKKNK---VTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred EEEEEEEEEeCCCCccccceeeeeEEEEeCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 3466788877653 59999999999999 99999999999999999999999 8999999998531
Q ss_pred ----ccccccccCCCCc--ccccchHHHHHHHHhc--CC--------------CccCc--cccccccCccCCceeecCCc
Q 038045 103 ----SSRVVDGNFDDPR--LTDYDTLLENVRDLRE--GK--------------PVQVP--IYDFESSSRTGYRTVEVPSS 158 (621)
Q Consensus 103 ----~~R~Ig~vfQdp~--l~d~~tV~enL~~L~~--gk--------------~V~~p--~yd~~~~~rsggq~qrVa~A 158 (621)
.++.++|++|++. +++ .++.+|+.+... +. .+.++ ..+.....+|+|+++++..+
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~la 162 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALA 162 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHH
Confidence 1235899999974 343 589999875321 10 11221 23344578899999999999
Q ss_pred cEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHH-HcCCCceehHhHHHHHhccccccchhhhcCCCCceee
Q 038045 159 RIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQ-RVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTET 237 (621)
Q Consensus 159 rVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~-erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~ 237 (621)
++++.+|.++++|||++.||+. ..+.+.++.+.+. +.|.|++.++|+.+... .++|++.++..|.+..
T Consensus 163 ral~~~p~lLlLDEPt~~LD~~-------~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~----~~~d~i~~l~~G~i~~ 231 (289)
T PRK13645 163 GIIAMDGNTLVLDEPTGGLDPK-------GEEDFINLFERLNKEYKKRIIMVTHNMDQVL----RIADEVIVMHEGKVIS 231 (289)
T ss_pred HHHHhCCCEEEEeCCcccCCHH-------HHHHHHHHHHHHHHhcCCEEEEEecCHHHHH----HhCCEEEEEECCEEEE
Confidence 9999999999999999999973 2344444444443 45899999999998876 6778888888888766
Q ss_pred ccCceeE
Q 038045 238 MEQTYDI 244 (621)
Q Consensus 238 ~~~~aDI 244 (621)
.+...++
T Consensus 232 ~g~~~~~ 238 (289)
T PRK13645 232 IGSPFEI 238 (289)
T ss_pred eCCHHHH
Confidence 5555554
No 191
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.3e-21 Score=197.76 Aligned_cols=193 Identities=17% Similarity=0.162 Sum_probs=151.9
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-C-----CeeEEEECCcccc-------
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-P-----SIAVISMDNYNDS------- 103 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P-----~sGvI~lDg~~~~------- 103 (621)
...++++|.++...+|+++||++++|+ ++||+||||||||||+++|+|+. + ..|.|.++|....
T Consensus 7 i~~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 7 LSTKNLNLWYGEKHALYDITISIPKNR---VTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred EEEeeeEEEECCeeeeeeeEEEECCCc---EEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 346788888888889999999999999 99999999999999999999986 2 3799999986321
Q ss_pred --cccccccCCCCcccccchHHHHHHHHhc--CC----C----c-------cC-----ccccccccCccCCceeecCCcc
Q 038045 104 --SRVVDGNFDDPRLTDYDTLLENVRDLRE--GK----P----V-------QV-----PIYDFESSSRTGYRTVEVPSSR 159 (621)
Q Consensus 104 --~R~Ig~vfQdp~l~d~~tV~enL~~L~~--gk----~----V-------~~-----p~yd~~~~~rsggq~qrVa~Ar 159 (621)
.+.++|+||++.+|+. ++.+|+.+... +. . + .+ ...+.....+|+|+++++..++
T Consensus 84 ~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar 162 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIAR 162 (253)
T ss_pred hhhceEEEEecCCccCcc-cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHH
Confidence 2458999999998874 99999986321 10 0 0 00 0123445678999999999999
Q ss_pred EEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeecc
Q 038045 160 IVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETME 239 (621)
Q Consensus 160 VLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~ 239 (621)
+++.+|.++++|||++.||.. ..+.+..+.+.+.+ +.|++.++|+..... .++|++.++.+|.+...+
T Consensus 163 al~~~p~lllLDEP~~gLD~~-------~~~~l~~~l~~~~~-~~tvii~sh~~~~~~----~~~d~v~~l~~G~i~~~g 230 (253)
T PRK14261 163 TLAVNPEVILMDEPCSALDPI-------ATAKIEDLIEDLKK-EYTVIIVTHNMQQAA----RVSDYTGFMYLGKLIEFD 230 (253)
T ss_pred HHhcCCCEEEEeCCcccCCHH-------HHHHHHHHHHHHhh-CceEEEEEcCHHHHH----hhCCEEEEEECCEEEEcC
Confidence 999999999999999999973 23445555555544 589999999998876 677888889999887777
Q ss_pred CceeEE
Q 038045 240 QTYDIY 245 (621)
Q Consensus 240 ~~aDIY 245 (621)
...+++
T Consensus 231 ~~~~~~ 236 (253)
T PRK14261 231 KTTQIF 236 (253)
T ss_pred CHHHHH
Confidence 776664
No 192
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=7.2e-22 Score=202.44 Aligned_cols=194 Identities=14% Similarity=0.222 Sum_probs=148.6
Q ss_pred eeeecceeeeeC--cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-------ccc
Q 038045 36 VPIQDPLSFEKG--FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-------SSR 105 (621)
Q Consensus 36 ~~v~~~lsf~~G--~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-------~~R 105 (621)
....+++++.++ ...+++++||++++|+ ++||+||||||||||+++|+|++ |..|.|.++|... .++
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 83 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGE---YVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRK 83 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhc
Confidence 345778888773 5679999999999999 99999999999999999999999 8999999998642 134
Q ss_pred cccccCCCCc-ccccchHHHHHHHHhcC---C-------------CccC-ccccccccCccCCceeecCCccEEEEecce
Q 038045 106 VVDGNFDDPR-LTDYDTLLENVRDLREG---K-------------PVQV-PIYDFESSSRTGYRTVEVPSSRIVIIEGIY 167 (621)
Q Consensus 106 ~Ig~vfQdp~-l~d~~tV~enL~~L~~g---k-------------~V~~-p~yd~~~~~rsggq~qrVa~ArVLIvEG~l 167 (621)
.++|+||++. .++..|+.+|+...... . .+.+ +..+.....+|+|+++++..+++++.+|.+
T Consensus 84 ~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l 163 (271)
T PRK13632 84 KIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEI 163 (271)
T ss_pred ceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 6899999985 57778999999753211 0 0111 123445678899999999999999999999
Q ss_pred eccccccCCCCeeEEecCCchHHHHHHHHHHHHHc-CCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 168 ALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRV-GQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 168 LLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~er-G~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
+++|||++.||.. ..+.+..+.+.+.+. +.|++.++|+.+... .+|++.++.+|.+...+...++
T Consensus 164 llLDEP~~gLD~~-------~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-----~~d~v~~l~~G~i~~~g~~~~~ 229 (271)
T PRK13632 164 IIFDESTSMLDPK-------GKREIKKIMVDLRKTRKKTLISITHDMDEAI-----LADKVIVFSEGKLIAQGKPKEI 229 (271)
T ss_pred EEEeCCcccCCHH-------HHHHHHHHHHHHHHhcCcEEEEEEechhHHh-----hCCEEEEEECCEEEEecCHHHH
Confidence 9999999999973 234444455544444 589999999987653 4677778888877655544443
No 193
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.2e-21 Score=202.73 Aligned_cols=192 Identities=15% Similarity=0.218 Sum_probs=151.4
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC---C---CeeEEEECCccc--------
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM---P---SIAVISMDNYND-------- 102 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl---P---~sGvI~lDg~~~-------- 102 (621)
...+++++.++...+++++||++.+|+ +++|+||||||||||+++|+|+. | ..|.|.++|...
T Consensus 40 l~~~~l~~~~~~~~il~~vsl~i~~Ge---~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~ 116 (286)
T PRK14275 40 VVAKNFSIYYGEFEAVKKVNADILSKY---VTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEV 116 (286)
T ss_pred EEEeeeEEEECCEEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchH
Confidence 456788888887889999999999999 99999999999999999999974 3 899999998631
Q ss_pred -ccccccccCCCCcccccchHHHHHHHHhc--CC---C------------ccC-----ccccccccCccCCceeecCCcc
Q 038045 103 -SSRVVDGNFDDPRLTDYDTLLENVRDLRE--GK---P------------VQV-----PIYDFESSSRTGYRTVEVPSSR 159 (621)
Q Consensus 103 -~~R~Ig~vfQdp~l~d~~tV~enL~~L~~--gk---~------------V~~-----p~yd~~~~~rsggq~qrVa~Ar 159 (621)
.++.++|+||++.+++. ++.+|+.+... +. . +.+ ...+.....+|+|++|++..++
T Consensus 117 ~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAr 195 (286)
T PRK14275 117 LLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVAR 195 (286)
T ss_pred HhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHH
Confidence 12468999999988875 99999976321 10 0 000 1123445788999999999999
Q ss_pred EEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeecc
Q 038045 160 IVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETME 239 (621)
Q Consensus 160 VLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~ 239 (621)
+++.+|.++++|||++.||+. ..+.+.++.+.+.. +.+++.++|+.+... .++|++.++.+|.+...+
T Consensus 196 aL~~~p~lllLDEPt~gLD~~-------~~~~l~~~L~~~~~-~~tvIivsH~~~~~~----~~~d~i~~L~~G~i~~~g 263 (286)
T PRK14275 196 TLAVEPEILLLDEPTSALDPK-------ATAKIEDLIQELRG-SYTIMIVTHNMQQAS----RVSDYTMFFYEGVLVEHA 263 (286)
T ss_pred HHhcCCCEEEEeCCCccCCHH-------HHHHHHHHHHHHhc-CCeEEEEeCCHHHHH----HhCCEEEEEECCEEEEeC
Confidence 999999999999999999973 23444455555543 689999999999886 677888889988887766
Q ss_pred CceeE
Q 038045 240 QTYDI 244 (621)
Q Consensus 240 ~~aDI 244 (621)
...++
T Consensus 264 ~~~~~ 268 (286)
T PRK14275 264 PTAQL 268 (286)
T ss_pred CHHHH
Confidence 66665
No 194
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.85 E-value=6.4e-22 Score=197.80 Aligned_cols=189 Identities=18% Similarity=0.240 Sum_probs=144.5
Q ss_pred ecceeeeeC--cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-------cccccc
Q 038045 39 QDPLSFEKG--FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-------SSRVVD 108 (621)
Q Consensus 39 ~~~lsf~~G--~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-------~~R~Ig 108 (621)
.+++++.++ ...+++++||++++|+ ++||+||||||||||+++|+|++ |..|.|.++|... .++.++
T Consensus 3 ~~~l~~~~~~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 3 FEHVRFRYKPDGPVILDNISLRIKPGE---VVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred EEEEEEecCCCCccceeceEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 356666664 3569999999999999 99999999999999999999999 8999999998632 134689
Q ss_pred ccCCCCcccccchHHHHHHHHhcCCC---c-------cC------------ccccccccCccCCceeecCCccEEEEecc
Q 038045 109 GNFDDPRLTDYDTLLENVRDLREGKP---V-------QV------------PIYDFESSSRTGYRTVEVPSSRIVIIEGI 166 (621)
Q Consensus 109 ~vfQdp~l~d~~tV~enL~~L~~gk~---V-------~~------------p~yd~~~~~rsggq~qrVa~ArVLIvEG~ 166 (621)
|+||++.+++ .++.+|+........ + .. ...+.....+|+|+++++..+++++.+|.
T Consensus 80 ~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ 158 (237)
T cd03252 80 VVLQENVLFN-RSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPR 158 (237)
T ss_pred EEcCCchhcc-chHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 9999998775 599999875321100 0 00 01123457889999999999999999999
Q ss_pred eeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 167 YALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 167 lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
++++|||++.||+. ..+.+.++.+.+. .|.|++.++|+.+... . +|++.++++|.+...++..++
T Consensus 159 llllDEP~~~LD~~-------~~~~l~~~l~~~~-~~~tiii~sH~~~~~~----~-~d~v~~l~~G~i~~~~~~~~~ 223 (237)
T cd03252 159 ILIFDEATSALDYE-------SEHAIMRNMHDIC-AGRTVIIIAHRLSTVK----N-ADRIIVMEKGRIVEQGSHDEL 223 (237)
T ss_pred EEEEeCCcccCCHH-------HHHHHHHHHHHhc-CCCEEEEEeCCHHHHH----h-CCEEEEEECCEEEEEcCHHHH
Confidence 99999999999973 2334444444444 3899999999998764 3 677888888887665555544
No 195
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=9.2e-22 Score=202.71 Aligned_cols=193 Identities=15% Similarity=0.167 Sum_probs=148.9
Q ss_pred eeecceeeeeC------cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc------
Q 038045 37 PIQDPLSFEKG------FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS------ 103 (621)
Q Consensus 37 ~v~~~lsf~~G------~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~------ 103 (621)
...+++++.++ ...+|+++||++++|+ +++|+|+||||||||+++|+|++ |+.|.|.+||....
T Consensus 5 l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~ 81 (280)
T PRK13633 5 IKCKNVSYKYESNEESTEKLALDDVNLEVKKGE---FLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLW 81 (280)
T ss_pred EEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHH
Confidence 34667877775 2569999999999999 99999999999999999999999 89999999986321
Q ss_pred --cccccccCCCCcc-cccchHHHHHHHHhcC---C-------------CccC-ccccccccCccCCceeecCCccEEEE
Q 038045 104 --SRVVDGNFDDPRL-TDYDTLLENVRDLREG---K-------------PVQV-PIYDFESSSRTGYRTVEVPSSRIVII 163 (621)
Q Consensus 104 --~R~Ig~vfQdp~l-~d~~tV~enL~~L~~g---k-------------~V~~-p~yd~~~~~rsggq~qrVa~ArVLIv 163 (621)
++.++|+||+|.. +...++.+++.+.... . .+.+ +..+.....+|+|+++++..+++++.
T Consensus 82 ~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~ 161 (280)
T PRK13633 82 DIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAM 161 (280)
T ss_pred HHhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHc
Confidence 3468999999852 2345788888753211 0 0111 12345568899999999999999999
Q ss_pred ecceeccccccCCCCeeEEecCCchHHHHHHHHHHHH-HcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCce
Q 038045 164 EGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQ-RVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTY 242 (621)
Q Consensus 164 EG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~-erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~a 242 (621)
+|.++++|||++.||+. ....+..+.+.+. +.|.|++.++|+++... . +|++.++++|.+...++..
T Consensus 162 ~p~llllDEPt~gLD~~-------~~~~l~~~l~~l~~~~g~tillvtH~~~~~~----~-~d~v~~l~~G~i~~~g~~~ 229 (280)
T PRK13633 162 RPECIIFDEPTAMLDPS-------GRREVVNTIKELNKKYGITIILITHYMEEAV----E-ADRIIVMDSGKVVMEGTPK 229 (280)
T ss_pred CCCEEEEeCCcccCCHH-------HHHHHHHHHHHHHHhcCCEEEEEecChHHHh----c-CCEEEEEECCEEEEecCHH
Confidence 99999999999999973 2344445555543 45999999999999875 4 7888889888877666655
Q ss_pred eE
Q 038045 243 DI 244 (621)
Q Consensus 243 DI 244 (621)
++
T Consensus 230 ~~ 231 (280)
T PRK13633 230 EI 231 (280)
T ss_pred HH
Confidence 55
No 196
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=8.1e-22 Score=197.71 Aligned_cols=190 Identities=17% Similarity=0.250 Sum_probs=149.7
Q ss_pred ecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-----ccccccccCC
Q 038045 39 QDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-----SSRVVDGNFD 112 (621)
Q Consensus 39 ~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-----~~R~Ig~vfQ 112 (621)
.+++++.++.. ++++++|++.+|+ ++||+|+||||||||+++|+|++ |..|.|.++|... ..+.++++||
T Consensus 3 ~~~l~~~~~~~-~l~~is~~i~~Ge---~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q 78 (235)
T cd03299 3 VENLSKDWKEF-KLKNVSLEVERGD---YFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQ 78 (235)
T ss_pred eEeEEEEeCCc-eeeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEee
Confidence 45677777654 8999999999999 99999999999999999999998 8999999999632 2347899999
Q ss_pred CCcccccchHHHHHHHHhcCC----------------CccC-ccccccccCccCCceeecCCccEEEEecceeccccccC
Q 038045 113 DPRLTDYDTLLENVRDLREGK----------------PVQV-PIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRP 175 (621)
Q Consensus 113 dp~l~d~~tV~enL~~L~~gk----------------~V~~-p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s 175 (621)
++.+|+..++.+|+....... .+.+ +..+.....+|+|+++++..+++++..|.++++|||++
T Consensus 79 ~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~ 158 (235)
T cd03299 79 NYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFS 158 (235)
T ss_pred cCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcc
Confidence 999999999999997532110 0111 11334456789999999999999999999999999999
Q ss_pred CCCeeEEecCCchHHHHHHHHHHHHH-cCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCcee
Q 038045 176 LLDLRVSVTGGVHFDLVKRVLRDIQR-VGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYD 243 (621)
Q Consensus 176 ~LDlkV~Vd~~~d~~LirRI~Rdl~e-rG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aD 243 (621)
.||.. ..+.+..+.+.+.. .|.|++.++|+..... .++|++.++.+|.+...+...+
T Consensus 159 gLD~~-------~~~~l~~~l~~~~~~~~~tili~tH~~~~~~----~~~d~i~~l~~G~i~~~~~~~~ 216 (235)
T cd03299 159 ALDVR-------TKEKLREELKKIRKEFGVTVLHVTHDFEEAW----ALADKVAIMLNGKLIQVGKPEE 216 (235)
T ss_pred cCCHH-------HHHHHHHHHHHHHHhcCCEEEEEecCHHHHH----HhCCEEEEEECCEEEEecCHHH
Confidence 99973 34555565555544 4999999999998876 6778888888887765444433
No 197
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.4e-21 Score=201.36 Aligned_cols=194 Identities=13% Similarity=0.124 Sum_probs=153.1
Q ss_pred eeeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-C-----CeeEEEECCccc-------
Q 038045 36 VPIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-P-----SIAVISMDNYND------- 102 (621)
Q Consensus 36 ~~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P-----~sGvI~lDg~~~------- 102 (621)
....+++++.++...+++++||++++|+ ++||+|+||||||||+++|+|++ | ..|.|.++|...
T Consensus 21 ~l~i~nl~~~~~~~~il~~vs~~i~~Ge---~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 21 AMAAVNLTLGFAGKTVLDQVSMGFPARA---VTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred EEEEeeEEEEECCEEEeeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 3467889999988899999999999999 99999999999999999999998 5 589999998632
Q ss_pred -ccccccccCCCCcccccchHHHHHHHHhc--C--C-------------CccCc-----cccccccCccCCceeecCCcc
Q 038045 103 -SSRVVDGNFDDPRLTDYDTLLENVRDLRE--G--K-------------PVQVP-----IYDFESSSRTGYRTVEVPSSR 159 (621)
Q Consensus 103 -~~R~Ig~vfQdp~l~d~~tV~enL~~L~~--g--k-------------~V~~p-----~yd~~~~~rsggq~qrVa~Ar 159 (621)
.++.++|+||++.+|+ .++.+|+..... . . ...+. .++.....+|+|+++++..++
T Consensus 98 ~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAr 176 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLAR 176 (276)
T ss_pred HHhhheEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHH
Confidence 1346899999999888 799999975321 1 0 01111 122335678999999999999
Q ss_pred EEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeecc
Q 038045 160 IVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETME 239 (621)
Q Consensus 160 VLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~ 239 (621)
+++.+|.++++|||++.||.. ..+.+.++.+.+.+ +.|++.++|+..... .++|++.++.+|.+...+
T Consensus 177 al~~~p~lllLDEPt~~LD~~-------~~~~l~~~L~~~~~-~~tiiivsH~~~~~~----~~~dri~~l~~G~i~~~g 244 (276)
T PRK14271 177 TLAVNPEVLLLDEPTSALDPT-------TTEKIEEFIRSLAD-RLTVIIVTHNLAQAA----RISDRAALFFDGRLVEEG 244 (276)
T ss_pred HHhcCCCEEEEcCCcccCCHH-------HHHHHHHHHHHHhc-CCEEEEEeCCHHHHH----HhCCEEEEEECCEEEEeC
Confidence 999999999999999999973 23344444444444 589999999998876 677888889999887777
Q ss_pred CceeEE
Q 038045 240 QTYDIY 245 (621)
Q Consensus 240 ~~aDIY 245 (621)
...+++
T Consensus 245 ~~~~~~ 250 (276)
T PRK14271 245 PTEQLF 250 (276)
T ss_pred CHHHHH
Confidence 766663
No 198
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.7e-21 Score=196.77 Aligned_cols=192 Identities=17% Similarity=0.224 Sum_probs=151.3
Q ss_pred eecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhh---CC---CeeEEEECCcccc--------
Q 038045 38 IQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNF---MP---SIAVISMDNYNDS-------- 103 (621)
Q Consensus 38 v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagL---lP---~sGvI~lDg~~~~-------- 103 (621)
..+++++.++...+++++||++++|+ ++||+||||||||||+++|+|+ .| ..|.|.+||....
T Consensus 5 ~~~~~~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14245 5 DARDVNFWYGDFHALKGISMEIEEKS---VVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDE 81 (250)
T ss_pred EEEEEEEEECCEeEEeeeeEEEeCCC---EEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHH
Confidence 46778888888889999999999999 9999999999999999999996 33 4899999986321
Q ss_pred -cccccccCCCCcccccchHHHHHHHHhc--C---C------------CccCc-----cccccccCccCCceeecCCccE
Q 038045 104 -SRVVDGNFDDPRLTDYDTLLENVRDLRE--G---K------------PVQVP-----IYDFESSSRTGYRTVEVPSSRI 160 (621)
Q Consensus 104 -~R~Ig~vfQdp~l~d~~tV~enL~~L~~--g---k------------~V~~p-----~yd~~~~~rsggq~qrVa~ArV 160 (621)
++.++|+||++.+++ .++.+|+.+... + . .+.+. ..+.....+|+|+++++..+++
T Consensus 82 ~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 160 (250)
T PRK14245 82 LRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARA 160 (250)
T ss_pred HhhheEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHH
Confidence 235899999998887 599999975321 1 0 01111 1233456789999999999999
Q ss_pred EEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccC
Q 038045 161 VIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQ 240 (621)
Q Consensus 161 LIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~ 240 (621)
++.+|.++++|||++.||+. ....+.++.+.+. .|.|++.++|+..... .++|++.++++|.+...+.
T Consensus 161 l~~~p~lllLDEPt~~LD~~-------~~~~l~~~l~~~~-~~~tiiivtH~~~~~~----~~~d~v~~l~~G~~~~~~~ 228 (250)
T PRK14245 161 MAVSPSVLLMDEPASALDPI-------STAKVEELIHELK-KDYTIVIVTHNMQQAA----RVSDKTAFFYMGEMVEYDD 228 (250)
T ss_pred HhcCCCEEEEeCCCccCCHH-------HHHHHHHHHHHHh-cCCeEEEEeCCHHHHH----hhCCEEEEEECCEEEEECC
Confidence 99999999999999999973 2344555555554 4789999999999876 6788888899998887777
Q ss_pred ceeEE
Q 038045 241 TYDIY 245 (621)
Q Consensus 241 ~aDIY 245 (621)
+.+++
T Consensus 229 ~~~~~ 233 (250)
T PRK14245 229 TKKIF 233 (250)
T ss_pred HHHHh
Confidence 77763
No 199
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.7e-21 Score=198.98 Aligned_cols=193 Identities=15% Similarity=0.200 Sum_probs=150.0
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-C-----CeeEEEECCccc--------
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-P-----SIAVISMDNYND-------- 102 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P-----~sGvI~lDg~~~-------- 102 (621)
...+++++.++...+++++||++++|+ +++|+|+||||||||+++|+|++ | ..|.|.++|...
T Consensus 11 l~i~~v~~~~~~~~il~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 11 LRTENLNVYYGSFLAVKNVWLDIPKNQ---ITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred EEEeeeEEEECCEEEeecceEEEcCCC---EEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 446788888888889999999999999 99999999999999999999986 2 689999998632
Q ss_pred -ccccccccCCCCcccccchHHHHHHHHhc--CCC-------------ccC-----ccccccccCccCCceeecCCccEE
Q 038045 103 -SSRVVDGNFDDPRLTDYDTLLENVRDLRE--GKP-------------VQV-----PIYDFESSSRTGYRTVEVPSSRIV 161 (621)
Q Consensus 103 -~~R~Ig~vfQdp~l~d~~tV~enL~~L~~--gk~-------------V~~-----p~yd~~~~~rsggq~qrVa~ArVL 161 (621)
.++.++|++|++.+++ .++.+|+..... +.. ... ...+.....+|+|+++++..++++
T Consensus 88 ~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral 166 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFP-KSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAI 166 (264)
T ss_pred HHhhhEEEEccCCcccc-ccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHH
Confidence 1346899999998887 499999875321 100 000 012334567899999999999999
Q ss_pred EEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCC---------C
Q 038045 162 IIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYP---------E 232 (621)
Q Consensus 162 IvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~---------e 232 (621)
+.+|.++++|||++.||+. ..+.+.++.+.+.+ +.|++.++|+.+... .++|++.++. +
T Consensus 167 ~~~p~lllLDEPt~~LD~~-------~~~~l~~~L~~~~~-~~tvi~vtH~~~~~~----~~~d~v~~l~~~~~~~~~~~ 234 (264)
T PRK14243 167 AVQPEVILMDEPCSALDPI-------STLRIEELMHELKE-QYTIIIVTHNMQQAA----RVSDMTAFFNVELTEGGGRY 234 (264)
T ss_pred hcCCCEEEEeCCCccCCHH-------HHHHHHHHHHHHhc-CCEEEEEecCHHHHH----HhCCEEEEEecccccccccC
Confidence 9999999999999999973 23344455555544 579999999998887 6777777776 6
Q ss_pred CceeeccCceeEE
Q 038045 233 GHTETMEQTYDIY 245 (621)
Q Consensus 233 g~Ie~~~~~aDIY 245 (621)
|.+...+...+++
T Consensus 235 g~i~~~~~~~~~~ 247 (264)
T PRK14243 235 GYLVEFDRTEKIF 247 (264)
T ss_pred ceEEEeCCHHHHH
Confidence 7777766776664
No 200
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=7.1e-22 Score=203.28 Aligned_cols=193 Identities=16% Similarity=0.167 Sum_probs=150.7
Q ss_pred eeecceeeeeCc---EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-------ccc
Q 038045 37 PIQDPLSFEKGF---FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-------SSR 105 (621)
Q Consensus 37 ~v~~~lsf~~G~---~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-------~~R 105 (621)
...+++++.++. +.+++++||++.+|+ ++||+|+||||||||+++|+|++ |..|.|.++|... ..+
T Consensus 5 l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge---~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 81 (277)
T PRK13642 5 LEVENLVFKYEKESDVNQLNGVSFSITKGE---WVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRR 81 (277)
T ss_pred EEEEEEEEEcCCCCcCeeeeeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhc
Confidence 346778887753 469999999999999 99999999999999999999999 8999999998642 134
Q ss_pred cccccCCCCc-ccccchHHHHHHHHhc--CC--------------CccC-ccccccccCccCCceeecCCccEEEEecce
Q 038045 106 VVDGNFDDPR-LTDYDTLLENVRDLRE--GK--------------PVQV-PIYDFESSSRTGYRTVEVPSSRIVIIEGIY 167 (621)
Q Consensus 106 ~Ig~vfQdp~-l~d~~tV~enL~~L~~--gk--------------~V~~-p~yd~~~~~rsggq~qrVa~ArVLIvEG~l 167 (621)
.++|+||++. .++..++.+|+.+... +. .+.+ ...+.....+|+|+++++..+++++.+|.+
T Consensus 82 ~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~l 161 (277)
T PRK13642 82 KIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEI 161 (277)
T ss_pred ceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 6899999985 5777899999975321 10 0011 122344678899999999999999999999
Q ss_pred eccccccCCCCeeEEecCCchHHHHHHHHHHHHH-cCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 168 ALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQR-VGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 168 LLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~e-rG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
+++|||++.||.. ..+.+.++.+.+.+ .|.|++.++|++.... . +|++.++++|.+...+++.++
T Consensus 162 lllDEPt~~LD~~-------~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~----~-~d~i~~l~~G~i~~~g~~~~~ 227 (277)
T PRK13642 162 IILDESTSMLDPT-------GRQEIMRVIHEIKEKYQLTVLSITHDLDEAA----S-SDRILVMKAGEIIKEAAPSEL 227 (277)
T ss_pred EEEeCCcccCCHH-------HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH----h-CCEEEEEECCEEEEeCCHHHH
Confidence 9999999999973 23444444444444 4999999999998874 3 788888998888766666655
No 201
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.5e-21 Score=200.16 Aligned_cols=193 Identities=16% Similarity=0.201 Sum_probs=152.3
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC------CCeeEEEECCccc--------
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM------PSIAVISMDNYND-------- 102 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl------P~sGvI~lDg~~~-------- 102 (621)
...+++++.++...+++++||++++|+ ++||+|+||||||||+++|+|++ |..|.|.++|...
T Consensus 25 l~~~~l~~~~~~~~il~~vsl~i~~Ge---~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 101 (271)
T PRK14238 25 FDTQNLNLWYGEDHALKNINLDIHENE---VTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVE 101 (271)
T ss_pred EEEeeeEEEECCcceeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHH
Confidence 457789988887789999999999999 99999999999999999999987 3889999998632
Q ss_pred -ccccccccCCCCcccccchHHHHHHHHhc--CC----Ccc---------------C-ccccccccCccCCceeecCCcc
Q 038045 103 -SSRVVDGNFDDPRLTDYDTLLENVRDLRE--GK----PVQ---------------V-PIYDFESSSRTGYRTVEVPSSR 159 (621)
Q Consensus 103 -~~R~Ig~vfQdp~l~d~~tV~enL~~L~~--gk----~V~---------------~-p~yd~~~~~rsggq~qrVa~Ar 159 (621)
..+.++|+||++.+|+ .++.+|+..... +. ... + ...+.....+|+|+++++..++
T Consensus 102 ~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~lar 180 (271)
T PRK14238 102 ELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIAR 180 (271)
T ss_pred HHhhhEEEEecCCcccc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHH
Confidence 1346899999998887 499999975321 10 000 0 0123345678999999999999
Q ss_pred EEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeecc
Q 038045 160 IVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETME 239 (621)
Q Consensus 160 VLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~ 239 (621)
+++.+|.++++|||++.||+. ....+.++.+.+.+ +.|++.++|+..... .++|++.++.+|.+...+
T Consensus 181 aL~~~p~lllLDEPt~~LD~~-------~~~~l~~~l~~~~~-~~tiiivsH~~~~i~----~~~d~i~~l~~G~i~~~g 248 (271)
T PRK14238 181 CLAIEPDVILMDEPTSALDPI-------STLKVEELVQELKK-DYSIIIVTHNMQQAA----RISDKTAFFLNGYVNEYD 248 (271)
T ss_pred HHHcCCCEEEEeCCCCcCCHH-------HHHHHHHHHHHHHc-CCEEEEEEcCHHHHH----HhCCEEEEEECCEEEEeC
Confidence 999999999999999999973 23344445555544 789999999998876 677888889999887777
Q ss_pred CceeEE
Q 038045 240 QTYDIY 245 (621)
Q Consensus 240 ~~aDIY 245 (621)
...+++
T Consensus 249 ~~~~~~ 254 (271)
T PRK14238 249 DTDKIF 254 (271)
T ss_pred CHHHHH
Confidence 766664
No 202
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.3e-21 Score=206.86 Aligned_cols=198 Identities=15% Similarity=0.187 Sum_probs=157.8
Q ss_pred eeecceeeee--CcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC------CCeeEEEECCccc------
Q 038045 37 PIQDPLSFEK--GFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM------PSIAVISMDNYND------ 102 (621)
Q Consensus 37 ~v~~~lsf~~--G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl------P~sGvI~lDg~~~------ 102 (621)
...++++|.+ +...+|+++||++++|+ ++||+|+||||||||+++|+|+. |..|.|.+||...
T Consensus 81 i~~~nls~~y~~~~~~~L~~is~~I~~Ge---~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~ 157 (329)
T PRK14257 81 FEIRNFNFWYMNRTKHVLHDLNLDIKRNK---VTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKIS 157 (329)
T ss_pred EEEEeeEEEecCCCceeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 4567888877 44679999999999999 99999999999999999999987 2589999999742
Q ss_pred ---ccccccccCCCCcccccchHHHHHHHHhc-C----C------------CccCc-----cccccccCccCCceeecCC
Q 038045 103 ---SSRVVDGNFDDPRLTDYDTLLENVRDLRE-G----K------------PVQVP-----IYDFESSSRTGYRTVEVPS 157 (621)
Q Consensus 103 ---~~R~Ig~vfQdp~l~d~~tV~enL~~L~~-g----k------------~V~~p-----~yd~~~~~rsggq~qrVa~ 157 (621)
.++.++|+||+|.+|. .++.+|+.+... . + ...++ ..+.....+|+|++|++..
T Consensus 158 ~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~L 236 (329)
T PRK14257 158 SLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCI 236 (329)
T ss_pred hHhhhccEEEEecCCccCC-CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHH
Confidence 1346899999999885 799999985321 1 0 00110 1234456789999999999
Q ss_pred ccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceee
Q 038045 158 SRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTET 237 (621)
Q Consensus 158 ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~ 237 (621)
+|+++.++.++++|||++.+|+. ....+..+.+.+.+ +.|++.++|+++... .++|++.++++|.+..
T Consensus 237 ARAl~~~p~IlLLDEPts~LD~~-------~~~~i~~~i~~l~~-~~Tii~iTH~l~~i~----~~~Driivl~~G~i~e 304 (329)
T PRK14257 237 ARAIALEPEVLLMDEPTSALDPI-------ATAKIEELILELKK-KYSIIIVTHSMAQAQ----RISDETVFFYQGWIEE 304 (329)
T ss_pred HHHHHhCCCEEEEeCCcccCCHH-------HHHHHHHHHHHHhc-CCEEEEEeCCHHHHH----HhCCEEEEEECCEEEE
Confidence 99999999999999999999973 22345555555544 689999999999887 7789999999999999
Q ss_pred ccCceeEEecCCC
Q 038045 238 MEQTYDIYLLPPG 250 (621)
Q Consensus 238 ~~~~aDIYi~P~~ 250 (621)
.+++.+++-.|..
T Consensus 305 ~g~~~~l~~~~~~ 317 (329)
T PRK14257 305 AGETKTIFIHPKN 317 (329)
T ss_pred eCCHHHHhcCCCc
Confidence 9999998655544
No 203
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.84 E-value=2.2e-21 Score=190.53 Aligned_cols=169 Identities=15% Similarity=0.140 Sum_probs=136.3
Q ss_pred ecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc------ccccccccC
Q 038045 39 QDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND------SSRVVDGNF 111 (621)
Q Consensus 39 ~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~------~~R~Ig~vf 111 (621)
.+++++.++...+++++||++++|+ ++||+||||||||||+++|+|++ |..|.|.++|... ..+.+++++
T Consensus 4 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~ 80 (204)
T PRK13538 4 ARNLACERDERILFSGLSFTLNAGE---LVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLG 80 (204)
T ss_pred EEEEEEEECCEEEEecceEEECCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeC
Confidence 5678888888889999999999999 99999999999999999999998 8999999998632 134688999
Q ss_pred CCCcccccchHHHHHHHHhc--C-C----------CccCc-cccccccCccCCceeecCCccEEEEecceeccccccCCC
Q 038045 112 DDPRLTDYDTLLENVRDLRE--G-K----------PVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLL 177 (621)
Q Consensus 112 Qdp~l~d~~tV~enL~~L~~--g-k----------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~L 177 (621)
|++.+++..++.+|+..... + . .+.+. ..+.....+|+|+++++..+++++.+|.++++|||++.|
T Consensus 81 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~L 160 (204)
T PRK13538 81 HQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAI 160 (204)
T ss_pred CccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 99888888999999976431 1 0 01111 123445788999999999999999999999999999999
Q ss_pred CeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHh
Q 038045 178 DLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETS 217 (621)
Q Consensus 178 DlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~ 217 (621)
|+. ..+.+.++.+.+.+.|.|++.++|+.....
T Consensus 161 D~~-------~~~~l~~~l~~~~~~~~tiii~sh~~~~i~ 193 (204)
T PRK13538 161 DKQ-------GVARLEALLAQHAEQGGMVILTTHQDLPVA 193 (204)
T ss_pred CHH-------HHHHHHHHHHHHHHCCCEEEEEecChhhhc
Confidence 973 234555555555566899999999987663
No 204
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=99.84 E-value=1.3e-21 Score=191.13 Aligned_cols=173 Identities=35% Similarity=0.639 Sum_probs=138.6
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCC--------CeeEEEECCccccc--------ccccccCCCCcccccchHHHHHHHHh
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFMP--------SIAVISMDNYNDSS--------RVVDGNFDDPRLTDYDTLLENVRDLR 130 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLlP--------~sGvI~lDg~~~~~--------R~Ig~vfQdp~l~d~~tV~enL~~L~ 130 (621)
||||.||+|||||||++.|+..+. ..+.+.+|+|+... ..-.+.|.+|..+++..+.+.|..++
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~L~ 80 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKALK 80 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHHHHHHHHHh
Confidence 699999999999999999999883 14567788875321 12246788999999999999999999
Q ss_pred cCCCccCccccccccCccCCceeecCCccEEEEecceeccc-cccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceeh
Q 038045 131 EGKPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSE-KLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEI 209 (621)
Q Consensus 131 ~gk~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlD-Ep~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~V 209 (621)
.++.+..|.|++..+.+.+ ........+++|+||.+++++ ++++.+|++||++++.+.++.|++.|+..++|.+.+.+
T Consensus 81 ~g~~i~~p~yd~~~~~~~~-~~~~~~~~~ivIvEG~~~l~~~~l~~l~D~~ifld~~~~~~l~Rri~RD~~~rG~~~~~~ 159 (194)
T PF00485_consen 81 NGGSIEIPIYDFSTGDRDP-WIIIISPSDIVIVEGIYALYDEELRDLFDLKIFLDADEDLRLERRIQRDVAERGRSPEEV 159 (194)
T ss_dssp TTSCEEEEEEETTTTEEEE-EEEEEES-SEEEEEETTTTSSHCHGGG-SEEEEEEE-HHHHHHHHHHHHHHHS-S-HHHH
T ss_pred CCCccccccccccccccee-eeeecCCCCEEEEcccceeeeeeecccceeEEEecccHHHHHHHHhhhhccccCCcceeE
Confidence 9999999999999877766 345566789999999999986 58899999999999999999999999999999999999
Q ss_pred HhHHHHHhccccccchhhhcCCCCceeeccCceeEEecCCCCC
Q 038045 210 IQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIYLLPPGED 252 (621)
Q Consensus 210 tHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIYi~P~~~~ 252 (621)
.++|..+. ..+..+|+|..+.||+ ++|....
T Consensus 160 ~~~~~~~~-----------~~~~~~I~p~~~~ADi-vi~~~~~ 190 (194)
T PF00485_consen 160 IAQYERVR-----------PGYERYIEPQKERADI-VIPSGPT 190 (194)
T ss_dssp HHHHHTHH-----------HHHHHCTGGGGGG-SE-EEESCTS
T ss_pred EEEeecCC-----------hhhhhheeccccccEE-EECCCCC
Confidence 99988443 3455689999999999 4555543
No 205
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=8.7e-22 Score=195.64 Aligned_cols=187 Identities=16% Similarity=0.215 Sum_probs=142.9
Q ss_pred eecceeeeeCc-EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-------cccccc
Q 038045 38 IQDPLSFEKGF-FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-------SSRVVD 108 (621)
Q Consensus 38 v~~~lsf~~G~-~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-------~~R~Ig 108 (621)
..+++++.++. ..+++++||++++|+ +++|+||||||||||+++|+|++ |..|.|.++|... .++.++
T Consensus 4 ~~~~l~~~~~~~~~~l~~isl~i~~G~---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (229)
T cd03254 4 EFENVNFSYDEKKPVLKDINFSIKPGE---TVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIG 80 (229)
T ss_pred EEEEEEEecCCCCccccceEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEE
Confidence 35677777763 569999999999999 99999999999999999999999 8999999998632 134689
Q ss_pred ccCCCCcccccchHHHHHHHHhcCCC----------ccCc------------cccccccCccCCceeecCCccEEEEecc
Q 038045 109 GNFDDPRLTDYDTLLENVRDLREGKP----------VQVP------------IYDFESSSRTGYRTVEVPSSRIVIIEGI 166 (621)
Q Consensus 109 ~vfQdp~l~d~~tV~enL~~L~~gk~----------V~~p------------~yd~~~~~rsggq~qrVa~ArVLIvEG~ 166 (621)
|+||++.+++. ++.+|+........ .... ..+.....+|+|+++++..+++++.+|.
T Consensus 81 ~~~q~~~~~~~-tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 81 VVLQDTFLFSG-TIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred EecCCchhhhh-HHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999988775 99999875421110 0000 0122346789999999999999999999
Q ss_pred eeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCc
Q 038045 167 YALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQT 241 (621)
Q Consensus 167 lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~ 241 (621)
++++|||++.||+. ..+.+..+.+.+. .|.|++.++|+..... . +|++.++.+|.+...++.
T Consensus 160 llllDEP~~~LD~~-------~~~~l~~~l~~~~-~~~tii~~sh~~~~~~----~-~d~i~~l~~g~~~~~~~~ 221 (229)
T cd03254 160 ILILDEATSNIDTE-------TEKLIQEALEKLM-KGRTSIIIAHRLSTIK----N-ADKILVLDDGKIIEEGTH 221 (229)
T ss_pred EEEEeCccccCCHH-------HHHHHHHHHHHhc-CCCEEEEEecCHHHHh----h-CCEEEEEeCCeEEEeCCH
Confidence 99999999999973 2334444444554 4899999999998764 3 677778888877654443
No 206
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=1e-21 Score=202.73 Aligned_cols=193 Identities=17% Similarity=0.200 Sum_probs=150.2
Q ss_pred eeecceeeeeCc--EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCe---eEEEECCcccc-------
Q 038045 37 PIQDPLSFEKGF--FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSI---AVISMDNYNDS------- 103 (621)
Q Consensus 37 ~v~~~lsf~~G~--~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~s---GvI~lDg~~~~------- 103 (621)
...++++|.++. ..+++++||++.+|+ ++||+||||||||||+++|+|++ |.. |.|.++|....
T Consensus 6 l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge---~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 6 VEFKHVSFTYPDSKKPALNDISFSIPRGS---WTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred EEEEEEEEEcCCCCccceeeEEEEEcCCC---EEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 446678887753 569999999999999 99999999999999999999999 765 89999997421
Q ss_pred cccccccCCCCc-ccccchHHHHHHHHhcCCC----------------ccC-ccccccccCccCCceeecCCccEEEEec
Q 038045 104 SRVVDGNFDDPR-LTDYDTLLENVRDLREGKP----------------VQV-PIYDFESSSRTGYRTVEVPSSRIVIIEG 165 (621)
Q Consensus 104 ~R~Ig~vfQdp~-l~d~~tV~enL~~L~~gk~----------------V~~-p~yd~~~~~rsggq~qrVa~ArVLIvEG 165 (621)
.+.++|+||++. .++..++.+|+.+...... +.+ +..+..+..+|+|+++++..+++++.+|
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P 162 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEP 162 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence 246899999985 6777899999975321100 111 1234456788999999999999999999
Q ss_pred ceeccccccCCCCeeEEecCCchHHHHHHHHHHHHH-cCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 166 IYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQR-VGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 166 ~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~e-rG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
.++++|||+..||.. ..+.+..+.+.+.+ .|.|++.++|++.... .+|++.++++|.+...+.+.++
T Consensus 163 ~llllDEPt~gLD~~-------~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~-----~~d~i~~l~~G~i~~~g~~~~~ 230 (282)
T PRK13640 163 KIIILDESTSMLDPA-------GKEQILKLIRKLKKKNNLTVISITHDIDEAN-----MADQVLVLDDGKLLAQGSPVEI 230 (282)
T ss_pred CEEEEECCcccCCHH-------HHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-----hCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999973 23344444444444 5999999999998763 4788888999988776666665
No 207
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.84 E-value=1.4e-21 Score=198.19 Aligned_cols=194 Identities=14% Similarity=0.213 Sum_probs=147.9
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-C----CeeEEEECCccc-----cccc
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-P----SIAVISMDNYND-----SSRV 106 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P----~sGvI~lDg~~~-----~~R~ 106 (621)
...+++++.+ ...+++++||++.+|+ +++|+|+||||||||+++|+|+. | +.|.|.++|... ..+.
T Consensus 5 l~~~~l~~~~-~~~il~~vsl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 80 (254)
T PRK10418 5 IELRNIALQA-AQPLVHGVSLTLQRGR---VLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRK 80 (254)
T ss_pred EEEeCeEEEe-ccceecceEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccce
Confidence 3467788877 4579999999999999 99999999999999999999998 7 889999998632 1246
Q ss_pred ccccCCCCc--ccccchHHHHHHHHh--cCC------------CccCc----cccccccCccCCceeecCCccEEEEecc
Q 038045 107 VDGNFDDPR--LTDYDTLLENVRDLR--EGK------------PVQVP----IYDFESSSRTGYRTVEVPSSRIVIIEGI 166 (621)
Q Consensus 107 Ig~vfQdp~--l~d~~tV~enL~~L~--~gk------------~V~~p----~yd~~~~~rsggq~qrVa~ArVLIvEG~ 166 (621)
++|+||++. ..+..++.+++.... .+. .+.+. ..+.....+|+|+++++..+++++.+|.
T Consensus 81 i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~ 160 (254)
T PRK10418 81 IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAP 160 (254)
T ss_pred EEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCC
Confidence 899999985 334557766664321 110 11121 1244567889999999999999999999
Q ss_pred eeccccccCCCCeeEEecCCchHHHHHHHHHHH-HHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEE
Q 038045 167 YALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDI-QRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIY 245 (621)
Q Consensus 167 lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl-~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIY 245 (621)
++++|||++.||.. ..+.+..+.+.+ ++.|.|++.++|+.+... .++|++.++.+|.+...+...+++
T Consensus 161 lLlLDEPt~~LD~~-------~~~~l~~~L~~~~~~~g~til~~sH~~~~~~----~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 161 FIIADEPTTDLDVV-------AQARILDLLESIVQKRALGMLLVTHDMGVVA----RLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred EEEEeCCCcccCHH-------HHHHHHHHHHHHHHhcCcEEEEEecCHHHHH----HhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999973 233444444444 345899999999998876 677888888888887766666653
No 208
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.84 E-value=2.1e-21 Score=198.82 Aligned_cols=193 Identities=20% Similarity=0.202 Sum_probs=149.3
Q ss_pred eecceeeeeC---------cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-----
Q 038045 38 IQDPLSFEKG---------FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND----- 102 (621)
Q Consensus 38 v~~~lsf~~G---------~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~----- 102 (621)
..++++|.++ ...+++++||++++|+ +++|+||||||||||+++|+|++ |.+|.|.++|...
T Consensus 5 ~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~ 81 (268)
T PRK10419 5 NVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGE---TVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR 81 (268)
T ss_pred EEeceEEEecCCccccccCceeeEeceeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccCh
Confidence 4567888776 4789999999999999 99999999999999999999998 8999999998732
Q ss_pred -----ccccccccCCCCc--ccccchHHHHHHHHhc---C--------------CCccC--ccccccccCccCCceeecC
Q 038045 103 -----SSRVVDGNFDDPR--LTDYDTLLENVRDLRE---G--------------KPVQV--PIYDFESSSRTGYRTVEVP 156 (621)
Q Consensus 103 -----~~R~Ig~vfQdp~--l~d~~tV~enL~~L~~---g--------------k~V~~--p~yd~~~~~rsggq~qrVa 156 (621)
..+.++|+||++. +++..++.+++..... . ....+ ...+.....+|+|+++++.
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~ 161 (268)
T PRK10419 82 AQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVC 161 (268)
T ss_pred hHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHH
Confidence 1346899999984 4566788888753210 0 01111 1234456778999999999
Q ss_pred CccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHH-HcCCCceehHhHHHHHhccccccchhhhcCCCCce
Q 038045 157 SSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQ-RVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHT 235 (621)
Q Consensus 157 ~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~-erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~I 235 (621)
.+++++.+|.++++|||++.||.. ..+.+..+.+.+. +.|.|++.++|+.+... .++|++.++.+|.+
T Consensus 162 laral~~~p~lllLDEPt~~LD~~-------~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~----~~~d~i~~l~~G~i 230 (268)
T PRK10419 162 LARALAVEPKLLILDEAVSNLDLV-------LQAGVIRLLKKLQQQFGTACLFITHDLRLVE----RFCQRVMVMDNGQI 230 (268)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHH-------HHHHHHHHHHHHHHHcCcEEEEEECCHHHHH----HhCCEEEEEECCEE
Confidence 999999999999999999999973 2334444444444 35899999999998876 67788888888888
Q ss_pred eeccCceeE
Q 038045 236 ETMEQTYDI 244 (621)
Q Consensus 236 e~~~~~aDI 244 (621)
...++..++
T Consensus 231 ~~~g~~~~~ 239 (268)
T PRK10419 231 VETQPVGDK 239 (268)
T ss_pred eeeCChhhc
Confidence 766666665
No 209
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.84 E-value=2.6e-21 Score=190.58 Aligned_cols=171 Identities=15% Similarity=0.140 Sum_probs=136.3
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc----ccccccccC
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND----SSRVVDGNF 111 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~----~~R~Ig~vf 111 (621)
...+++++.++...+++++||++++|+ ++||+||||||||||+++|+|+. |..|.|.++|... .++.++|++
T Consensus 3 l~~~~l~~~~~~~~~l~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (207)
T PRK13539 3 LEGEDLACVRGGRVLFSGLSFTLAAGE---ALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLG 79 (207)
T ss_pred EEEEeEEEEECCeEEEeceEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEec
Confidence 456788888888889999999999999 99999999999999999999998 8999999998642 234688999
Q ss_pred CCCcccccchHHHHHHHHhc--CC----------CccCc-cccccccCccCCceeecCCccEEEEecceeccccccCCCC
Q 038045 112 DDPRLTDYDTLLENVRDLRE--GK----------PVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLD 178 (621)
Q Consensus 112 Qdp~l~d~~tV~enL~~L~~--gk----------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LD 178 (621)
|.+.+++..++.+|+..... +. .+.+. ..+.....+|+|+++++..+++++.+|.++++|||++.+|
T Consensus 80 ~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD 159 (207)
T PRK13539 80 HRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALD 159 (207)
T ss_pred CCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 88888888999999875321 11 01111 1234456889999999999999999999999999999999
Q ss_pred eeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHh
Q 038045 179 LRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETS 217 (621)
Q Consensus 179 lkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~ 217 (621)
+. ..+.+.++.+.+.+.|.|++.++|+.++..
T Consensus 160 ~~-------~~~~l~~~l~~~~~~~~tiii~sH~~~~~~ 191 (207)
T PRK13539 160 AA-------AVALFAELIRAHLAQGGIVIAATHIPLGLP 191 (207)
T ss_pred HH-------HHHHHHHHHHHHHHCCCEEEEEeCCchhhc
Confidence 73 234445555555556999999999987764
No 210
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=1.1e-21 Score=187.79 Aligned_cols=157 Identities=20% Similarity=0.270 Sum_probs=126.8
Q ss_pred ecceeeeeCcE--EEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-------cccccc
Q 038045 39 QDPLSFEKGFF--VVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-------SSRVVD 108 (621)
Q Consensus 39 ~~~lsf~~G~~--~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-------~~R~Ig 108 (621)
.+++++.++.. .+++++||++++|+ +++|+||||||||||+++|+|++ |..|.|.++|... .++.++
T Consensus 3 ~~~l~~~~~~~~~~~l~~i~~~i~~G~---~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (171)
T cd03228 3 FKNVSFSYPGRPKPVLKDVSLTIKPGE---KVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIA 79 (171)
T ss_pred EEEEEEEcCCCCcccccceEEEEcCCC---EEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEE
Confidence 35667766654 79999999999999 99999999999999999999999 8999999998632 124689
Q ss_pred ccCCCCcccccchHHHHHHHHhcCCCccCccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCch
Q 038045 109 GNFDDPRLTDYDTLLENVRDLREGKPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVH 188 (621)
Q Consensus 109 ~vfQdp~l~d~~tV~enL~~L~~gk~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d 188 (621)
|+||++.+++ .++.+|+ +|+|+++++..+++++.+|.++++|||+..||.. .
T Consensus 80 ~~~~~~~~~~-~t~~e~l--------------------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~-------~ 131 (171)
T cd03228 80 YVPQDPFLFS-GTIRENI--------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPE-------T 131 (171)
T ss_pred EEcCCchhcc-chHHHHh--------------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHH-------H
Confidence 9999998776 5888887 7889999999999999999999999999999973 2
Q ss_pred HHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCC
Q 038045 189 FDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPE 232 (621)
Q Consensus 189 ~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~e 232 (621)
.+.+.++.+.+. .+.+++.++|+.+... . +|++.++..
T Consensus 132 ~~~l~~~l~~~~-~~~tii~~sh~~~~~~----~-~d~~~~l~~ 169 (171)
T cd03228 132 EALILEALRALA-KGKTVIVIAHRLSTIR----D-ADRIIVLDD 169 (171)
T ss_pred HHHHHHHHHHhc-CCCEEEEEecCHHHHH----h-CCEEEEEcC
Confidence 334444444443 3789999999988764 3 555555543
No 211
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=2.4e-21 Score=195.42 Aligned_cols=196 Identities=16% Similarity=0.199 Sum_probs=153.1
Q ss_pred eecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC---C---CeeEEEECCcccc--------
Q 038045 38 IQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM---P---SIAVISMDNYNDS-------- 103 (621)
Q Consensus 38 v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl---P---~sGvI~lDg~~~~-------- 103 (621)
..+++++.++...+++++||++.+|+ ++||+||||||||||+++|+|+. | +.|.|.+||....
T Consensus 5 ~~~~v~~~~~~~~~l~~~s~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~ 81 (250)
T PRK14266 5 EVENLNTYFDDAHILKNVNLDIPKNS---VTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVE 81 (250)
T ss_pred EEEeEEEEeCCeEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHH
Confidence 46778888887889999999999999 99999999999999999999975 3 7899999997421
Q ss_pred -cccccccCCCCcccccchHHHHHHHHhc-CC----C-c-----------cC-----ccccccccCccCCceeecCCccE
Q 038045 104 -SRVVDGNFDDPRLTDYDTLLENVRDLRE-GK----P-V-----------QV-----PIYDFESSSRTGYRTVEVPSSRI 160 (621)
Q Consensus 104 -~R~Ig~vfQdp~l~d~~tV~enL~~L~~-gk----~-V-----------~~-----p~yd~~~~~rsggq~qrVa~ArV 160 (621)
.+.++|+||++.+|+. ++.+|+..... .. . . .+ ...+.....+|+|+++++..+++
T Consensus 82 ~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~lara 160 (250)
T PRK14266 82 LRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIART 160 (250)
T ss_pred HhhheEEEecCCccCcc-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHH
Confidence 2468999999998875 99999975321 10 0 0 00 11233456789999999999999
Q ss_pred EEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccC
Q 038045 161 VIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQ 240 (621)
Q Consensus 161 LIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~ 240 (621)
++.+|.++++|||+..+|+. ....+..+.+.+.+ |.|++.++|+..+.. .+++++.+++.|.+...+.
T Consensus 161 l~~~p~llllDEP~~gLD~~-------~~~~l~~~l~~~~~-~~tiii~sh~~~~~~----~~~~~i~~l~~G~i~~~g~ 228 (250)
T PRK14266 161 IAVSPEVILMDEPCSALDPI-------STTKIEDLIHKLKE-DYTIVIVTHNMQQAT----RVSKYTSFFLNGEIIESGL 228 (250)
T ss_pred HHcCCCEEEEcCCCccCCHH-------HHHHHHHHHHHHhc-CCeEEEEECCHHHHH----hhcCEEEEEECCeEEEeCC
Confidence 99999999999999999973 23445555555543 789999999999887 7788888888898877777
Q ss_pred ceeEEecCC
Q 038045 241 TYDIYLLPP 249 (621)
Q Consensus 241 ~aDIYi~P~ 249 (621)
..+++..|.
T Consensus 229 ~~~~~~~~~ 237 (250)
T PRK14266 229 TDQIFINPK 237 (250)
T ss_pred HHHHHhCCC
Confidence 666643433
No 212
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.84 E-value=1.9e-21 Score=185.89 Aligned_cols=146 Identities=16% Similarity=0.149 Sum_probs=121.0
Q ss_pred ecceeeeeC-cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccccccccccCCCCcc
Q 038045 39 QDPLSFEKG-FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDSSRVVDGNFDDPRL 116 (621)
Q Consensus 39 ~~~lsf~~G-~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~~R~Ig~vfQdp~l 116 (621)
.+++++.++ ...+++++||++++|+ +++|+||||||||||+++|+|++ |..|.|.+++. +.++|++|++.+
T Consensus 3 ~~~~~~~~~~~~~~l~~i~l~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~----~~i~~~~q~~~~ 75 (166)
T cd03223 3 LENLSLATPDGRVLLKDLSFEIKPGD---RLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG----EDLLFLPQRPYL 75 (166)
T ss_pred EEEEEEEcCCCCeeeecCeEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC----ceEEEECCCCcc
Confidence 356666663 3579999999999999 99999999999999999999998 89999999874 578999999876
Q ss_pred cccchHHHHHHHHhcCCCccCccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHH
Q 038045 117 TDYDTLLENVRDLREGKPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVL 196 (621)
Q Consensus 117 ~d~~tV~enL~~L~~gk~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~ 196 (621)
+ ..++.+|+.+. ....+|+|+++++..+++++.+|.++++|||++.||+. ..+++.
T Consensus 76 ~-~~tv~~nl~~~-------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~----------~~~~l~ 131 (166)
T cd03223 76 P-LGTLREQLIYP-------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEE----------SEDRLY 131 (166)
T ss_pred c-cccHHHHhhcc-------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHH----------HHHHHH
Confidence 5 56999998752 23678999999999999999999999999999999972 222333
Q ss_pred HHHHHcCCCceehHhHHHH
Q 038045 197 RDIQRVGQEPEEIIQQISE 215 (621)
Q Consensus 197 Rdl~erG~Ti~~VtHd~ee 215 (621)
..+.+.+.|++.++|+.+.
T Consensus 132 ~~l~~~~~tiiivsh~~~~ 150 (166)
T cd03223 132 QLLKELGITVISVGHRPSL 150 (166)
T ss_pred HHHHHhCCEEEEEeCChhH
Confidence 3333447899999999764
No 213
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.84 E-value=1.7e-21 Score=191.11 Aligned_cols=169 Identities=15% Similarity=0.096 Sum_probs=135.5
Q ss_pred ecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc------ccccccccC
Q 038045 39 QDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND------SSRVVDGNF 111 (621)
Q Consensus 39 ~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~------~~R~Ig~vf 111 (621)
.+++++.++...+++++||++++|+ ++||+|+||||||||+++|+|+. |..|.|.++|... .++.++|++
T Consensus 3 i~~l~~~~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (201)
T cd03231 3 ADELTCERDGRALFSGLSFTLAAGE---ALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLG 79 (201)
T ss_pred EEEEEEEeCCceeeccceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEec
Confidence 4678888888889999999999999 99999999999999999999998 8999999998642 124689999
Q ss_pred CCCcccccchHHHHHHHHhcCC----------CccCcc-ccccccCccCCceeecCCccEEEEecceeccccccCCCCee
Q 038045 112 DDPRLTDYDTLLENVRDLREGK----------PVQVPI-YDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLR 180 (621)
Q Consensus 112 Qdp~l~d~~tV~enL~~L~~gk----------~V~~p~-yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlk 180 (621)
|++.+++..++.+|+....... .+.+.. .+.....+|+|+++++..+++++.+|.++++|||++.||+.
T Consensus 80 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~ 159 (201)
T cd03231 80 HAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKA 159 (201)
T ss_pred cccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Confidence 9999888899999997643210 111221 23445778999999999999999999999999999999973
Q ss_pred EEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHh
Q 038045 181 VSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETS 217 (621)
Q Consensus 181 V~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~ 217 (621)
..+.+..+.+.+.+.|.|++.++|+.....
T Consensus 160 -------~~~~l~~~l~~~~~~g~tiii~sH~~~~~~ 189 (201)
T cd03231 160 -------GVARFAEAMAGHCARGGMVVLTTHQDLGLS 189 (201)
T ss_pred -------HHHHHHHHHHHHHhCCCEEEEEecCchhhh
Confidence 234445555555566899999999876554
No 214
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.84 E-value=2.5e-21 Score=189.48 Aligned_cols=168 Identities=15% Similarity=0.079 Sum_probs=135.5
Q ss_pred ecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc------ccccccccC
Q 038045 39 QDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND------SSRVVDGNF 111 (621)
Q Consensus 39 ~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~------~~R~Ig~vf 111 (621)
.+++++.++...+++++||++++|+ ++||+||||||||||+++|+|+. |+.|.|.+||... ..+.++|++
T Consensus 4 ~~~l~~~~~~~~il~~~s~~i~~Ge---~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~ 80 (200)
T PRK13540 4 VIELDFDYHDQPLLQQISFHLPAGG---LLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVG 80 (200)
T ss_pred EEEEEEEeCCeeEEeeeeEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEec
Confidence 5678888887889999999999999 99999999999999999999998 8999999998632 124689999
Q ss_pred CCCcccccchHHHHHHHHhcC-C----------CccCc-cccccccCccCCceeecCCccEEEEecceeccccccCCCCe
Q 038045 112 DDPRLTDYDTLLENVRDLREG-K----------PVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDL 179 (621)
Q Consensus 112 Qdp~l~d~~tV~enL~~L~~g-k----------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDl 179 (621)
|++.+++..++.+|+.+.... . ...++ ..+.....+|+|+++++..+++++.+|.++++|||++.||.
T Consensus 81 q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~ 160 (200)
T PRK13540 81 HRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDE 160 (200)
T ss_pred cccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCH
Confidence 998888889999998763211 0 01111 12344567899999999999999999999999999999997
Q ss_pred eEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHH
Q 038045 180 RVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISET 216 (621)
Q Consensus 180 kV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea 216 (621)
. ..+.+.++.+.+.+.|.|++.++|+.+..
T Consensus 161 ~-------~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 190 (200)
T PRK13540 161 L-------SLLTIITKIQEHRAKGGAVLLTSHQDLPL 190 (200)
T ss_pred H-------HHHHHHHHHHHHHHcCCEEEEEeCCchhc
Confidence 3 34455555566656799999999996544
No 215
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.84 E-value=1.4e-21 Score=195.55 Aligned_cols=179 Identities=17% Similarity=0.169 Sum_probs=139.8
Q ss_pred EeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc--cccccccCCCCcccccchHHHHHHH
Q 038045 52 IRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS--SRVVDGNFDDPRLTDYDTLLENVRD 128 (621)
Q Consensus 52 Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~--~R~Ig~vfQdp~l~d~~tV~enL~~ 128 (621)
++++||++++|+ ++||+||||||||||+++|+|++ |..|.|.++|.... ....+|++|++.+++..++.+|+..
T Consensus 1 l~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~ 77 (230)
T TIGR01184 1 LKGVNLTIQQGE---FISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIAL 77 (230)
T ss_pred CCceeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHH
Confidence 468999999999 99999999999999999999999 89999999986432 1235899999999999999999876
Q ss_pred Hhc----CCC--------------ccCc-cccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchH
Q 038045 129 LRE----GKP--------------VQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHF 189 (621)
Q Consensus 129 L~~----gk~--------------V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~ 189 (621)
... ... +.+. ..+.....+|+|+++++..+++++.+|.++++|||++.||+. ..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~-------~~ 150 (230)
T TIGR01184 78 AVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDAL-------TR 150 (230)
T ss_pred HHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHH-------HH
Confidence 321 100 0111 123445778999999999999999999999999999999973 23
Q ss_pred HHHHHHHHHHH-HcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 190 DLVKRVLRDIQ-RVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 190 ~LirRI~Rdl~-erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
+.+.++.+.+. +.|.|++.++|+++... .++|++.++.+|.+...++..++
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~~~~----~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVDEAL----LLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHH----HhcCEEEEEeCCcEecccCceec
Confidence 44444444443 45899999999998876 67788888888888766554443
No 216
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.84 E-value=3.1e-21 Score=194.57 Aligned_cols=192 Identities=11% Similarity=0.062 Sum_probs=146.6
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhh--C-CCeeEEEECCcccc------cc--
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNF--M-PSIAVISMDNYNDS------SR-- 105 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagL--l-P~sGvI~lDg~~~~------~R-- 105 (621)
...+++++.++...+|+++||++++|+ ++||+|+||||||||+++|+|+ + |..|.|.++|.... .+
T Consensus 8 l~~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T CHL00131 8 LEIKNLHASVNENEILKGLNLSINKGE---IHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHL 84 (252)
T ss_pred EEEEeEEEEeCCEEeeecceeEEcCCc---EEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhee
Confidence 457788888887889999999999999 9999999999999999999997 4 78999999986321 11
Q ss_pred cccccCCCCcccccchHHHHHHHHhcC-------C----------------CccCc--ccccccc-CccCCceeecCCcc
Q 038045 106 VVDGNFDDPRLTDYDTLLENVRDLREG-------K----------------PVQVP--IYDFESS-SRTGYRTVEVPSSR 159 (621)
Q Consensus 106 ~Ig~vfQdp~l~d~~tV~enL~~L~~g-------k----------------~V~~p--~yd~~~~-~rsggq~qrVa~Ar 159 (621)
.++++||++.+++..++.+++...... . .+.++ ..+.... .+|+|+++++..++
T Consensus 85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~ 164 (252)
T CHL00131 85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQ 164 (252)
T ss_pred eEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHH
Confidence 367899999888888888887643210 0 01111 1233344 48999999999999
Q ss_pred EEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhcccccc-chhhhcCCCCceeec
Q 038045 160 IVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSV-DQIKAVYPEGHTETM 238 (621)
Q Consensus 160 VLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~-~d~iavl~eg~Ie~~ 238 (621)
+++.+|.++++|||++.||.. ..+.+.++.+.+.+.|.|++.++|+.+... .. +|++.++++|.+...
T Consensus 165 al~~~p~llllDEPt~~LD~~-------~~~~l~~~l~~~~~~g~tii~~tH~~~~~~----~~~~d~i~~l~~G~i~~~ 233 (252)
T CHL00131 165 MALLDSELAILDETDSGLDID-------ALKIIAEGINKLMTSENSIILITHYQRLLD----YIKPDYVHVMQNGKIIKT 233 (252)
T ss_pred HHHcCCCEEEEcCCcccCCHH-------HHHHHHHHHHHHHhCCCEEEEEecCHHHHH----hhhCCEEEEEeCCEEEEe
Confidence 999999999999999999972 334555555555566899999999988765 33 677777888877655
Q ss_pred cCce
Q 038045 239 EQTY 242 (621)
Q Consensus 239 ~~~a 242 (621)
++..
T Consensus 234 ~~~~ 237 (252)
T CHL00131 234 GDAE 237 (252)
T ss_pred cChh
Confidence 4443
No 217
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.84 E-value=3e-21 Score=197.93 Aligned_cols=193 Identities=17% Similarity=0.122 Sum_probs=152.1
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-C-----CeeEEEECCccc--------
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-P-----SIAVISMDNYND-------- 102 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P-----~sGvI~lDg~~~-------- 102 (621)
...++++|.++...+++++||++++|+ ++||+||||||||||+++|+|++ | ..|.|.++|...
T Consensus 26 l~~~nl~~~~~~~~il~~vs~~i~~Ge---~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~ 102 (272)
T PRK14236 26 LEVRNLNLFYGDKQALFDISMRIPKNR---VTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVA 102 (272)
T ss_pred EEEEEEEEEECCeeEeeeEEEEEcCCC---EEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHH
Confidence 346788888887889999999999999 99999999999999999999997 3 689999998632
Q ss_pred -ccccccccCCCCcccccchHHHHHHHHhc--CC---------------CccCc-----cccccccCccCCceeecCCcc
Q 038045 103 -SSRVVDGNFDDPRLTDYDTLLENVRDLRE--GK---------------PVQVP-----IYDFESSSRTGYRTVEVPSSR 159 (621)
Q Consensus 103 -~~R~Ig~vfQdp~l~d~~tV~enL~~L~~--gk---------------~V~~p-----~yd~~~~~rsggq~qrVa~Ar 159 (621)
.++.++|+||++.+|+. ++.+|+..... +. ..... ..+.....+|+|+++++..++
T Consensus 103 ~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lar 181 (272)
T PRK14236 103 ELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIAR 181 (272)
T ss_pred HHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHH
Confidence 13468999999988886 99999975321 10 00110 123345678999999999999
Q ss_pred EEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeecc
Q 038045 160 IVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETME 239 (621)
Q Consensus 160 VLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~ 239 (621)
+++.+|.++++|||+..||+. ....+..+.+.+.+ +.|++.++|+.+... .++|++.++++|.+...+
T Consensus 182 al~~~p~lllLDEPt~gLD~~-------~~~~l~~~L~~~~~-~~tiiivtH~~~~~~----~~~d~i~~l~~G~i~~~g 249 (272)
T PRK14236 182 AIAIEPEVLLLDEPTSALDPI-------STLKIEELITELKS-KYTIVIVTHNMQQAA----RVSDYTAFMYMGKLVEYG 249 (272)
T ss_pred HHHCCCCEEEEeCCcccCCHH-------HHHHHHHHHHHHHh-CCeEEEEeCCHHHHH----hhCCEEEEEECCEEEecC
Confidence 999999999999999999973 23455555555554 789999999998876 677888889999887766
Q ss_pred CceeEE
Q 038045 240 QTYDIY 245 (621)
Q Consensus 240 ~~aDIY 245 (621)
...+++
T Consensus 250 ~~~~~~ 255 (272)
T PRK14236 250 DTDTLF 255 (272)
T ss_pred CHHHHh
Confidence 666653
No 218
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.84 E-value=2.7e-21 Score=188.77 Aligned_cols=167 Identities=16% Similarity=0.150 Sum_probs=134.0
Q ss_pred ecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc------ccccccccC
Q 038045 39 QDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND------SSRVVDGNF 111 (621)
Q Consensus 39 ~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~------~~R~Ig~vf 111 (621)
.+++++.++...+++++||.+.+|+ +++|+||||||||||+++|+|++ |..|.|.++|... ..+.++|++
T Consensus 3 ~~~l~~~~~~~~~l~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (198)
T TIGR01189 3 ARNLACSRGERMLFEGLSFTLNAGE---ALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLG 79 (198)
T ss_pred EEEEEEEECCEEEEeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEec
Confidence 4567888888899999999999999 99999999999999999999998 8999999998632 124688999
Q ss_pred CCCcccccchHHHHHHHHhc--C-CC---------ccCc-cccccccCccCCceeecCCccEEEEecceeccccccCCCC
Q 038045 112 DDPRLTDYDTLLENVRDLRE--G-KP---------VQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLD 178 (621)
Q Consensus 112 Qdp~l~d~~tV~enL~~L~~--g-k~---------V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LD 178 (621)
|++.+++..++.+|+..... . .. +.+. ..+.....+|+|+++++..+++++.+|.++++|||++.||
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD 159 (198)
T TIGR01189 80 HLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALD 159 (198)
T ss_pred cCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence 99888888999999976431 1 00 1111 1234457889999999999999999999999999999999
Q ss_pred eeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHH
Q 038045 179 LRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISE 215 (621)
Q Consensus 179 lkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~ee 215 (621)
.. ..+.+.++.+.+.+.|.|++.++|+...
T Consensus 160 ~~-------~~~~l~~~l~~~~~~~~tii~~sH~~~~ 189 (198)
T TIGR01189 160 KA-------GVALLAGLLRAHLARGGIVLLTTHQDLG 189 (198)
T ss_pred HH-------HHHHHHHHHHHHHhCCCEEEEEEccccc
Confidence 73 2345555555555668999999998643
No 219
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.84 E-value=2.4e-21 Score=199.54 Aligned_cols=193 Identities=15% Similarity=0.124 Sum_probs=149.0
Q ss_pred eecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CC--------eeEEEECCcccc-----
Q 038045 38 IQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PS--------IAVISMDNYNDS----- 103 (621)
Q Consensus 38 v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~--------sGvI~lDg~~~~----- 103 (621)
..+++++.++...+|+++||++++|+ +++|+||||||||||+++|+|++ |. .|.|.++|....
T Consensus 3 ~~~nl~~~~~~~~il~~vsl~i~~Ge---~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (272)
T PRK13547 3 TADHLHVARRHRAILRDLSLRIEPGR---VTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAP 79 (272)
T ss_pred EEEEEEEEECCEeEEecceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHH
Confidence 35678888888899999999999999 99999999999999999999999 66 899999986321
Q ss_pred --cccccccCCCCcccccchHHHHHHHHhcC-----C---------------CccCc-cccccccCccCCceeecCCccE
Q 038045 104 --SRVVDGNFDDPRLTDYDTLLENVRDLREG-----K---------------PVQVP-IYDFESSSRTGYRTVEVPSSRI 160 (621)
Q Consensus 104 --~R~Ig~vfQdp~l~d~~tV~enL~~L~~g-----k---------------~V~~p-~yd~~~~~rsggq~qrVa~ArV 160 (621)
.+.++|+||++..+...++.+|+...... . .+.+. ..+.....+|+|+++++..+++
T Consensus 80 ~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lara 159 (272)
T PRK13547 80 RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARV 159 (272)
T ss_pred HHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHH
Confidence 23478999998765568999998763210 0 00111 1233456889999999999999
Q ss_pred EE---------EecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHH-cCCCceehHhHHHHHhccccccchhhhcC
Q 038045 161 VI---------IEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQR-VGQEPEEIIQQISETSAKNLSVDQIKAVY 230 (621)
Q Consensus 161 LI---------vEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~e-rG~Ti~~VtHd~eea~~R~v~~~d~iavl 230 (621)
++ .+|.++++|||+..||+. ..+.+..+.+.+.+ .|.|++.++|+.+... ..+|++.++
T Consensus 160 l~~~~~~~~~~~~p~lllLDEPt~~LD~~-------~~~~l~~~l~~~~~~~~~tviiisH~~~~~~----~~~d~i~~l 228 (272)
T PRK13547 160 LAQLWPPHDAAQPPRYLLLDEPTAALDLA-------HQHRLLDTVRRLARDWNLGVLAIVHDPNLAA----RHADRIAML 228 (272)
T ss_pred HhccccccccCCCCCEEEEcCccccCCHH-------HHHHHHHHHHHHHHhcCCEEEEEECCHHHHH----HhCCEEEEE
Confidence 99 499999999999999973 23444445555444 4899999999998876 677888888
Q ss_pred CCCceeeccCceeE
Q 038045 231 PEGHTETMEQTYDI 244 (621)
Q Consensus 231 ~eg~Ie~~~~~aDI 244 (621)
.+|.+...+...++
T Consensus 229 ~~G~i~~~g~~~~~ 242 (272)
T PRK13547 229 ADGAIVAHGAPADV 242 (272)
T ss_pred ECCeEEEecCHHHH
Confidence 88887665555554
No 220
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.84 E-value=2.3e-21 Score=194.75 Aligned_cols=179 Identities=13% Similarity=0.150 Sum_probs=138.4
Q ss_pred eeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc------ccccccccC-CCCc
Q 038045 44 FEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND------SSRVVDGNF-DDPR 115 (621)
Q Consensus 44 f~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~------~~R~Ig~vf-Qdp~ 115 (621)
..+|...+|+++||++++|+ +++|+|+||||||||+++|+|++ |..|.|.++|... ..+.++|++ |++.
T Consensus 29 ~~~~~~~il~~vs~~i~~Ge---~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~ 105 (236)
T cd03267 29 RKYREVEALKGISFTIEKGE---IVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQ 105 (236)
T ss_pred cccCCeeeeeceeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccc
Confidence 45677889999999999999 99999999999999999999998 8999999998632 124688988 5567
Q ss_pred ccccchHHHHHHHHhc--CC--------------CccC-ccccccccCccCCceeecCCccEEEEecceeccccccCCCC
Q 038045 116 LTDYDTLLENVRDLRE--GK--------------PVQV-PIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLD 178 (621)
Q Consensus 116 l~d~~tV~enL~~L~~--gk--------------~V~~-p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LD 178 (621)
+++..++.+++..... +. .+.+ +..+.....+|+|+++++..+++++.+|.++++|||++.||
T Consensus 106 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD 185 (236)
T cd03267 106 LWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLD 185 (236)
T ss_pred cCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 7788899999865321 10 0111 12344457789999999999999999999999999999999
Q ss_pred eeEEecCCchHHHHHHHHHHHHH-cCCCceehHhHHHHHhccccccchhhhcCCCCcee
Q 038045 179 LRVSVTGGVHFDLVKRVLRDIQR-VGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTE 236 (621)
Q Consensus 179 lkV~Vd~~~d~~LirRI~Rdl~e-rG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie 236 (621)
+. ..+.+.++.+.+.+ .|.|++.++|+.+... ..+|++.++.+|.+.
T Consensus 186 ~~-------~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~----~~~d~i~~l~~G~i~ 233 (236)
T cd03267 186 VV-------AQENIRNFLKEYNRERGTTVLLTSHYMKDIE----ALARRVLVIDKGRLL 233 (236)
T ss_pred HH-------HHHHHHHHHHHHHhcCCCEEEEEecCHHHHH----HhCCEEEEEeCCEEE
Confidence 73 23444444444433 4889999999998776 566777777766553
No 221
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=2.2e-21 Score=199.50 Aligned_cols=193 Identities=15% Similarity=0.156 Sum_probs=150.2
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-C-----CeeEEEECCccc--------
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-P-----SIAVISMDNYND-------- 102 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P-----~sGvI~lDg~~~-------- 102 (621)
...+++++.++...+|+++||++++|+ +++|+||||||||||+++|+|++ | ..|.|.++|...
T Consensus 21 l~~~nl~~~~~~~~~l~~vs~~i~~Ge---~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~ 97 (274)
T PRK14265 21 FEVEGVKVFYGGFLALVDVHLKIPAKK---IIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSV 97 (274)
T ss_pred EEEeeEEEEeCCeEEEeeeeeEEcCCC---EEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhH
Confidence 446788888888889999999999999 99999999999999999999987 3 489999998632
Q ss_pred -ccccccccCCCCcccccchHHHHHHHHhcCC---------------CccC-----ccccccccCccCCceeecCCccEE
Q 038045 103 -SSRVVDGNFDDPRLTDYDTLLENVRDLREGK---------------PVQV-----PIYDFESSSRTGYRTVEVPSSRIV 161 (621)
Q Consensus 103 -~~R~Ig~vfQdp~l~d~~tV~enL~~L~~gk---------------~V~~-----p~yd~~~~~rsggq~qrVa~ArVL 161 (621)
.++.++|+||++.+|+. ++.+|+....... .+.+ ...+.....+|+|+++++..++++
T Consensus 98 ~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL 176 (274)
T PRK14265 98 KLRRQVGMVFQRPNPFPK-SIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAI 176 (274)
T ss_pred HHhhcEEEEccCCccccc-cHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHH
Confidence 12468999999988874 9999987532100 0011 112344567899999999999999
Q ss_pred EEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCC---------C
Q 038045 162 IIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYP---------E 232 (621)
Q Consensus 162 IvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~---------e 232 (621)
+.+|.++++|||++.||+. ..+.+.++.+.+.+ +.|++.++|+..... .++|++.+++ +
T Consensus 177 ~~~p~lllLDEPt~~LD~~-------~~~~l~~~L~~~~~-~~tiii~sH~~~~~~----~~~d~i~~l~~~~~~~~~~~ 244 (274)
T PRK14265 177 AMKPDVLLMDEPCSALDPI-------STRQVEELCLELKE-QYTIIMVTHNMQQAS----RVADWTAFFNTEIDEYGKRR 244 (274)
T ss_pred hhCCCEEEEeCCcccCCHH-------HHHHHHHHHHHHhc-CCEEEEEeCCHHHHH----HhCCEEEEEecccccccccC
Confidence 9999999999999999973 23444445555443 689999999998887 6778888886 6
Q ss_pred CceeeccCceeEE
Q 038045 233 GHTETMEQTYDIY 245 (621)
Q Consensus 233 g~Ie~~~~~aDIY 245 (621)
|.+...+...+++
T Consensus 245 G~~~~~g~~~~~~ 257 (274)
T PRK14265 245 GKLVEFSPTEQMF 257 (274)
T ss_pred ceEEEeCCHHHHH
Confidence 7777766766663
No 222
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.84 E-value=2.4e-21 Score=215.73 Aligned_cols=193 Identities=17% Similarity=0.202 Sum_probs=149.0
Q ss_pred eecceeeeeC----cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-C-----CeeEEEECCccc-----
Q 038045 38 IQDPLSFEKG----FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-P-----SIAVISMDNYND----- 102 (621)
Q Consensus 38 v~~~lsf~~G----~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P-----~sGvI~lDg~~~----- 102 (621)
..+++++.|+ ...+++++||++.+|+ ++||+||||||||||+++|+|++ | .+|.|.++|...
T Consensus 7 ~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge---~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 83 (529)
T PRK15134 7 AIENLSVAFRQQQTVRTVVNDVSLQIEAGE---TLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASE 83 (529)
T ss_pred EEeceEEEecCCCCceeeeeceEEEEeCCC---EEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCH
Confidence 4567777775 2689999999999999 99999999999999999999999 4 589999998631
Q ss_pred -----c-cccccccCCCCc--ccccchHHHHHHHHh---cCC--------------CccCcc----ccccccCccCCcee
Q 038045 103 -----S-SRVVDGNFDDPR--LTDYDTLLENVRDLR---EGK--------------PVQVPI----YDFESSSRTGYRTV 153 (621)
Q Consensus 103 -----~-~R~Ig~vfQdp~--l~d~~tV~enL~~L~---~gk--------------~V~~p~----yd~~~~~rsggq~q 153 (621)
. .+.++|+||++. +++..++.+++.... .+. .+.+.. .+....++|+|++|
T Consensus 84 ~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~q 163 (529)
T PRK15134 84 QTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQ 163 (529)
T ss_pred HHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHH
Confidence 0 136899999985 566778888876421 110 112221 24456889999999
Q ss_pred ecCCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHH-cCCCceehHhHHHHHhccccccchhhhcCCC
Q 038045 154 EVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQR-VGQEPEEIIQQISETSAKNLSVDQIKAVYPE 232 (621)
Q Consensus 154 rVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~e-rG~Ti~~VtHd~eea~~R~v~~~d~iavl~e 232 (621)
++.++++++.+|.++++|||++.||+. ..+.+.++.+.+.+ .|.|++.|+|+++.+. ..+|++.++++
T Consensus 164 rv~iAraL~~~p~llllDEPt~~LD~~-------~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~----~~~dri~~l~~ 232 (529)
T PRK15134 164 RVMIAMALLTRPELLIADEPTTALDVS-------VQAQILQLLRELQQELNMGLLFITHNLSIVR----KLADRVAVMQN 232 (529)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCccCHH-------HHHHHHHHHHHHHHhcCCeEEEEcCcHHHHH----HhcCEEEEEEC
Confidence 999999999999999999999999973 23444455555444 4899999999998886 67788888888
Q ss_pred CceeeccCceeE
Q 038045 233 GHTETMEQTYDI 244 (621)
Q Consensus 233 g~Ie~~~~~aDI 244 (621)
|.+...+...++
T Consensus 233 G~i~~~g~~~~~ 244 (529)
T PRK15134 233 GRCVEQNRAATL 244 (529)
T ss_pred CEEEEeCCHHHH
Confidence 887665555444
No 223
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.84 E-value=1.8e-21 Score=216.87 Aligned_cols=195 Identities=15% Similarity=0.164 Sum_probs=153.7
Q ss_pred eeecceeeeeC-----------cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCcccc--
Q 038045 37 PIQDPLSFEKG-----------FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNYNDS-- 103 (621)
Q Consensus 37 ~v~~~lsf~~G-----------~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~~~~-- 103 (621)
...+++++.|+ .+.+|+++||++++|+ ++||+||||||||||+++|+|++|..|.|.++|....
T Consensus 276 l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge---~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~~ 352 (529)
T PRK15134 276 LDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGE---TLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNL 352 (529)
T ss_pred ccccCcEEEeecCccccccccccceeeecceeEEcCCC---EEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEcccc
Confidence 34677887764 3679999999999999 9999999999999999999999988999999985311
Q ss_pred --------cccccccCCCCc--ccccchHHHHHHHHh--cC----C------------CccCc--cccccccCccCCcee
Q 038045 104 --------SRVVDGNFDDPR--LTDYDTLLENVRDLR--EG----K------------PVQVP--IYDFESSSRTGYRTV 153 (621)
Q Consensus 104 --------~R~Ig~vfQdp~--l~d~~tV~enL~~L~--~g----k------------~V~~p--~yd~~~~~rsggq~q 153 (621)
++.++|+||++. +++..++.+|+.+.. .. . .+.+. ..+.....+|+|++|
T Consensus 353 ~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~q 432 (529)
T PRK15134 353 NRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQ 432 (529)
T ss_pred chhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHH
Confidence 245899999973 788889999997631 10 0 11222 234456789999999
Q ss_pred ecCCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHH-cCCCceehHhHHHHHhccccccchhhhcCCC
Q 038045 154 EVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQR-VGQEPEEIIQQISETSAKNLSVDQIKAVYPE 232 (621)
Q Consensus 154 rVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~e-rG~Ti~~VtHd~eea~~R~v~~~d~iavl~e 232 (621)
++..+++++.+|.++++|||++.||+. ..+.+..+.+.+.+ .|.|++.++|++..+. .++|++.++++
T Consensus 433 rv~la~al~~~p~llllDEPt~~LD~~-------~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~----~~~d~i~~l~~ 501 (529)
T PRK15134 433 RIAIARALILKPSLIILDEPTSSLDKT-------VQAQILALLKSLQQKHQLAYLFISHDLHVVR----ALCHQVIVLRQ 501 (529)
T ss_pred HHHHHHHHhCCCCEEEeeCCccccCHH-------HHHHHHHHHHHHHHhhCCEEEEEeCCHHHHH----HhcCeEEEEEC
Confidence 999999999999999999999999973 23444455555444 5899999999999887 77888889999
Q ss_pred CceeeccCceeEE
Q 038045 233 GHTETMEQTYDIY 245 (621)
Q Consensus 233 g~Ie~~~~~aDIY 245 (621)
|.+...+...+++
T Consensus 502 G~i~~~~~~~~~~ 514 (529)
T PRK15134 502 GEVVEQGDCERVF 514 (529)
T ss_pred CEEEEEcCHHHHh
Confidence 9887666666653
No 224
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=2.9e-21 Score=196.74 Aligned_cols=198 Identities=16% Similarity=0.153 Sum_probs=153.0
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CC-----eeEEEECCccc--------
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PS-----IAVISMDNYND-------- 102 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~-----sGvI~lDg~~~-------- 102 (621)
...+++++.++...+|+++||++++|+ ++||+|+||||||||+++|+|+. |+ .|.|.++|...
T Consensus 8 l~~~nl~~~~~~~~il~~is~~i~~Ge---~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~ 84 (261)
T PRK14258 8 IKVNNLSFYYDTQKILEGVSMEIYQSK---VTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLN 84 (261)
T ss_pred EEEeeEEEEeCCeeEeeceEEEEcCCc---EEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchH
Confidence 357788888887789999999999999 99999999999999999999999 53 78999988632
Q ss_pred -ccccccccCCCCcccccchHHHHHHHHhc--C--C-------------CccC-----ccccccccCccCCceeecCCcc
Q 038045 103 -SSRVVDGNFDDPRLTDYDTLLENVRDLRE--G--K-------------PVQV-----PIYDFESSSRTGYRTVEVPSSR 159 (621)
Q Consensus 103 -~~R~Ig~vfQdp~l~d~~tV~enL~~L~~--g--k-------------~V~~-----p~yd~~~~~rsggq~qrVa~Ar 159 (621)
.++.++|+||++.+|+ .++.+|+..... + . .+.. +..+.....+|+|+++++..++
T Consensus 85 ~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lar 163 (261)
T PRK14258 85 RLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIAR 163 (261)
T ss_pred HhhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHH
Confidence 1235889999998887 899999875321 0 0 0010 0123345678999999999999
Q ss_pred EEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHH-HcCCCceehHhHHHHHhccccccchhhhcCCC-----C
Q 038045 160 IVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQ-RVGQEPEEIIQQISETSAKNLSVDQIKAVYPE-----G 233 (621)
Q Consensus 160 VLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~-erG~Ti~~VtHd~eea~~R~v~~~d~iavl~e-----g 233 (621)
+++.+|.++++|||++.||+. ....+.++.+.+. +.|.|++.++|+..... .++|++.++.+ |
T Consensus 164 al~~~p~vllLDEP~~~LD~~-------~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~----~~~d~i~~l~~~~~~~G 232 (261)
T PRK14258 164 ALAVKPKVLLMDEPCFGLDPI-------ASMKVESLIQSLRLRSELTMVIVSHNLHQVS----RLSDFTAFFKGNENRIG 232 (261)
T ss_pred HHhcCCCEEEEeCCCccCCHH-------HHHHHHHHHHHHHHhCCCEEEEEECCHHHHH----HhcCEEEEEccCCCcCc
Confidence 999999999999999999973 2234444444433 35899999999999887 77888888998 8
Q ss_pred ceeeccCceeEEecCC
Q 038045 234 HTETMEQTYDIYLLPP 249 (621)
Q Consensus 234 ~Ie~~~~~aDIYi~P~ 249 (621)
.+...+.+.+++-.|.
T Consensus 233 ~i~~~~~~~~~~~~~~ 248 (261)
T PRK14258 233 QLVEFGLTKKIFNSPH 248 (261)
T ss_pred eEEEeCCHHHHHhCCC
Confidence 8777677777643333
No 225
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.84 E-value=2.3e-21 Score=193.21 Aligned_cols=178 Identities=12% Similarity=0.142 Sum_probs=138.9
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-------cccccc
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-------SSRVVD 108 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-------~~R~Ig 108 (621)
...+++++.++...+++++||++++|+ +++|+||||||||||+++|+|+. |..|.|.++|... ..+.++
T Consensus 8 i~~~~l~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 8 LQLQNVGYLAGDAKILNNISFSLRAGE---FKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred EEEeccEEeeCCceeeeccEEEEcCCC---EEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 446788888887889999999999999 99999999999999999999998 8999999998632 134689
Q ss_pred ccCCCCcccccchHHHHHHHHhc--C-C-----------CccCc--cccccccCccCCceeecCCccEEEEecceecccc
Q 038045 109 GNFDDPRLTDYDTLLENVRDLRE--G-K-----------PVQVP--IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEK 172 (621)
Q Consensus 109 ~vfQdp~l~d~~tV~enL~~L~~--g-k-----------~V~~p--~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDE 172 (621)
|+||++.+++. ++.+|+.+... + . .+.+. ..+.....+|+|+++++..+++++.+|.++++||
T Consensus 85 ~~~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 163 (225)
T PRK10247 85 YCAQTPTLFGD-TVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDE 163 (225)
T ss_pred EEecccccccc-cHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99999988874 99999875211 1 0 11121 1244567789999999999999999999999999
Q ss_pred ccCCCCeeEEecCCchHHHHHHHHHHH-HHcCCCceehHhHHHHHhccccccchhhhcC
Q 038045 173 LRPLLDLRVSVTGGVHFDLVKRVLRDI-QRVGQEPEEIIQQISETSAKNLSVDQIKAVY 230 (621)
Q Consensus 173 p~s~LDlkV~Vd~~~d~~LirRI~Rdl-~erG~Ti~~VtHd~eea~~R~v~~~d~iavl 230 (621)
|+..||+. ..+.+..+.+.+ ++.|.|++.++|+.+... .+|++.++
T Consensus 164 Pt~~LD~~-------~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-----~~d~i~~l 210 (225)
T PRK10247 164 ITSALDES-------NKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-----HADKVITL 210 (225)
T ss_pred CcccCCHH-------HHHHHHHHHHHHHHhcCCEEEEEECChHHHH-----hCCEEEEE
Confidence 99999973 234555555554 345899999999987753 24555555
No 226
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.84 E-value=2.6e-21 Score=191.80 Aligned_cols=181 Identities=18% Similarity=0.159 Sum_probs=139.4
Q ss_pred ecceeeeeCc----EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc----------c
Q 038045 39 QDPLSFEKGF----FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND----------S 103 (621)
Q Consensus 39 ~~~lsf~~G~----~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~----------~ 103 (621)
.+++++.++. ..+++++||.+++|+ +++|+|+||||||||+++|+|++ |..|.|.++|... .
T Consensus 4 ~~~l~~~~~~~~~~~~il~~vs~~i~~G~---~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (220)
T TIGR02982 4 IRNLNHYYGHGSLRKQVLFDINLEINPGE---IVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQL 80 (220)
T ss_pred EEEEEEEccCCCcceeEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHH
Confidence 4567776653 789999999999999 99999999999999999999999 8999999998632 1
Q ss_pred cccccccCCCCcccccchHHHHHHHHhc-CCC----------------ccC-ccccccccCccCCceeecCCccEEEEec
Q 038045 104 SRVVDGNFDDPRLTDYDTLLENVRDLRE-GKP----------------VQV-PIYDFESSSRTGYRTVEVPSSRIVIIEG 165 (621)
Q Consensus 104 ~R~Ig~vfQdp~l~d~~tV~enL~~L~~-gk~----------------V~~-p~yd~~~~~rsggq~qrVa~ArVLIvEG 165 (621)
.+.++|+||++.+|+..++.+|+.+... ... +.+ +..+......|+|+++++..+++++.+|
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p 160 (220)
T TIGR02982 81 RRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRP 160 (220)
T ss_pred HhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCC
Confidence 2468999999999998999999986431 100 111 1233445678999999999999999999
Q ss_pred ceeccccccCCCCeeEEecCCchHHHHHHHHHHH-HHcCCCceehHhHHHHHhccccccchhhhcCCCCc
Q 038045 166 IYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDI-QRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGH 234 (621)
Q Consensus 166 ~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl-~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~ 234 (621)
.++++|||+..||.. ....+..+.+.+ ++.|.|++.++|+.. .. ..+|++.+++.|.
T Consensus 161 ~illlDEP~~~LD~~-------~~~~l~~~l~~~~~~~~~tii~~sh~~~-~~----~~~d~v~~l~~g~ 218 (220)
T TIGR02982 161 KLVLADEPTAALDSK-------SGRDVVELMQKLAREQGCTILIVTHDNR-IL----DVADRIVHMEDGK 218 (220)
T ss_pred CEEEEeCCCCcCCHH-------HHHHHHHHHHHHHHHcCCEEEEEeCCHH-HH----hhCCEEEEEECCE
Confidence 999999999999973 223333444433 346899999999986 33 4566666666553
No 227
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.84 E-value=3.1e-21 Score=191.30 Aligned_cols=169 Identities=18% Similarity=0.210 Sum_probs=131.9
Q ss_pred ecceeeeeCc-------EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEEC--Cc--cc----
Q 038045 39 QDPLSFEKGF-------FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMD--NY--ND---- 102 (621)
Q Consensus 39 ~~~lsf~~G~-------~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lD--g~--~~---- 102 (621)
.+++++.++. ..+++++||++.+|+ ++||+||||||||||+++|+|++ |..|.|.++ |. ..
T Consensus 4 ~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~ 80 (224)
T TIGR02324 4 VEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGE---CVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS 80 (224)
T ss_pred EEeeEEEeecccCCCcceEEEecceEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcC
Confidence 4567766642 579999999999999 99999999999999999999999 889999997 32 10
Q ss_pred -------ccccccccCCCCcccccchHHHHHHHHh--cCC--------------CccCcc--ccccccCccCCceeecCC
Q 038045 103 -------SSRVVDGNFDDPRLTDYDTLLENVRDLR--EGK--------------PVQVPI--YDFESSSRTGYRTVEVPS 157 (621)
Q Consensus 103 -------~~R~Ig~vfQdp~l~d~~tV~enL~~L~--~gk--------------~V~~p~--yd~~~~~rsggq~qrVa~ 157 (621)
..+.++|+||++.+++.+++.+++.+.. .+. .+.++. .+.....+|+|+++++..
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~l 160 (224)
T TIGR02324 81 PREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNI 160 (224)
T ss_pred HHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHH
Confidence 1235899999999999999999987521 110 011111 134467889999999999
Q ss_pred ccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHh
Q 038045 158 SRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETS 217 (621)
Q Consensus 158 ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~ 217 (621)
+++++.+|.++++|||++.||+. ..+.+..+.+.+.+.|.|++.++|+.+...
T Consensus 161 aral~~~p~llllDEPt~~LD~~-------~~~~l~~~l~~~~~~g~tii~vsH~~~~~~ 213 (224)
T TIGR02324 161 ARGFIADYPILLLDEPTASLDAA-------NRQVVVELIAEAKARGAALIGIFHDEEVRE 213 (224)
T ss_pred HHHHhcCCCEEEEcCCcccCCHH-------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 99999999999999999999973 234455555555566999999999987664
No 228
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.84 E-value=2e-21 Score=187.61 Aligned_cols=181 Identities=15% Similarity=0.138 Sum_probs=142.6
Q ss_pred ceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-----------cccccc
Q 038045 41 PLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-----------SSRVVD 108 (621)
Q Consensus 41 ~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-----------~~R~Ig 108 (621)
.+.-.-+...+|++++|.+++|| .++|+||||||||||+-.++|+. |++|.|.+.|... ..+++|
T Consensus 15 tvg~~~~~l~IL~~V~L~v~~Ge---~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vG 91 (228)
T COG4181 15 TVGQGEGELSILKGVELVVKRGE---TVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVG 91 (228)
T ss_pred hhcCCCcceeEeecceEEecCCc---eEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhcccee
Confidence 34334567789999999999999 89999999999999999999999 9999999998721 235799
Q ss_pred ccCCCCcccccchHHHHHHHHh--cCCCc--------------cC-ccccccccCccCCceeecCCccEEEEecceeccc
Q 038045 109 GNFDDPRLTDYDTLLENVRDLR--EGKPV--------------QV-PIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSE 171 (621)
Q Consensus 109 ~vfQdp~l~d~~tV~enL~~L~--~gk~V--------------~~-p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlD 171 (621)
+|||.+.++|.++..||++... .++.. .+ ....+.++++|||++|+|+++|++..+|.+++.|
T Consensus 92 fVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfAD 171 (228)
T COG4181 92 FVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFAD 171 (228)
T ss_pred EEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEecc
Confidence 9999999999999999998744 23111 11 2356778999999999999999999999999999
Q ss_pred cccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCce
Q 038045 172 KLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHT 235 (621)
Q Consensus 172 Ep~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~I 235 (621)
||+-+||-. ...+...-+.....++|.|.+.||||-.-+. -|++...|..|.+
T Consensus 172 EPTGNLD~~------Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~-----Rc~R~~r~~~G~l 224 (228)
T COG4181 172 EPTGNLDRA------TGDKIADLLFALNRERGTTLVLVTHDPQLAA-----RCDRQLRLRSGRL 224 (228)
T ss_pred CCCCCcchh------HHHHHHHHHHHHhhhcCceEEEEeCCHHHHH-----hhhheeeeeccee
Confidence 999999952 2234445555566788999999999965542 2444444555544
No 229
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.84 E-value=1.8e-21 Score=213.99 Aligned_cols=189 Identities=14% Similarity=0.122 Sum_probs=158.1
Q ss_pred eecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc--------ccccc
Q 038045 38 IQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS--------SRVVD 108 (621)
Q Consensus 38 v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~--------~R~Ig 108 (621)
-.++++..||...||+++||++.+|| +++++|.||||||||+|+|+|.+ |+.|.|.+||.... ...+.
T Consensus 10 ~~~~i~K~FggV~AL~~v~l~v~~GE---V~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~ 86 (500)
T COG1129 10 ELRGISKSFGGVKALDGVSLTVRPGE---VHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIA 86 (500)
T ss_pred eeecceEEcCCceeeccceeEEeCce---EEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcE
Confidence 46789999999999999999999999 99999999999999999999999 99999999997321 24588
Q ss_pred ccCCCCcccccchHHHHHHHHhcCCC----cc----------------Cc-cccccccCccCCceeecCCccEEEEecce
Q 038045 109 GNFDDPRLTDYDTLLENVRDLREGKP----VQ----------------VP-IYDFESSSRTGYRTVEVPSSRIVIIEGIY 167 (621)
Q Consensus 109 ~vfQdp~l~d~~tV~enL~~L~~gk~----V~----------------~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~l 167 (621)
.+||+++++|.++|.+|+........ +. .. .-+....+++.+++|.|.+++++..++.+
T Consensus 87 ~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arl 166 (500)
T COG1129 87 TVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARV 166 (500)
T ss_pred EEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999975332110 11 00 02333467778899999999999999999
Q ss_pred eccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccC
Q 038045 168 ALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQ 240 (621)
Q Consensus 168 LLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~ 240 (621)
+++|||++.|+. .+.+.+-++.|.++++|.++++|+|.++++. .+||++.+|.+|...-+..
T Consensus 167 lIlDEPTaaLt~-------~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~----~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 167 LILDEPTAALTV-------KETERLFDLIRRLKAQGVAIIYISHRLDEVF----EIADRITVLRDGRVVGTRP 228 (500)
T ss_pred EEEcCCcccCCH-------HHHHHHHHHHHHHHhCCCEEEEEcCcHHHHH----HhcCEEEEEeCCEEeeecc
Confidence 999999999996 4456677777888899999999999999998 9999999999997655433
No 230
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.84 E-value=1.4e-21 Score=224.38 Aligned_cols=189 Identities=19% Similarity=0.232 Sum_probs=152.3
Q ss_pred eeecceeeeeCcE--EEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcc-------ccccc
Q 038045 37 PIQDPLSFEKGFF--VVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYN-------DSSRV 106 (621)
Q Consensus 37 ~v~~~lsf~~G~~--~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~-------~~~R~ 106 (621)
...++++|.|+.. .+|+++||++++|+ .|||+|+||||||||+|.|.|++ |..|.|.+||++ ..++.
T Consensus 472 I~~~nvsf~y~~~~~~vL~~isL~I~~Ge---~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ 548 (709)
T COG2274 472 IEFENVSFRYGPDDPPVLEDLSLEIPPGE---KVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQ 548 (709)
T ss_pred EEEEEEEEEeCCCCcchhhceeEEeCCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhh
Confidence 4678899999876 79999999999999 99999999999999999999999 999999999984 23578
Q ss_pred ccccCCCCcccccchHHHHHHHHhcCCC-----------------ccCc-ccccc----ccCccCCceeecCCccEEEEe
Q 038045 107 VDGNFDDPRLTDYDTLLENVRDLREGKP-----------------VQVP-IYDFE----SSSRTGYRTVEVPSSRIVIIE 164 (621)
Q Consensus 107 Ig~vfQdp~l~d~~tV~enL~~L~~gk~-----------------V~~p-~yd~~----~~~rsggq~qrVa~ArVLIvE 164 (621)
+||+.|++-+| .-+++||+......-. ...| .|+.. -..+||||+|+++.||+++.+
T Consensus 549 ig~V~Q~~~Lf-~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~ 627 (709)
T COG2274 549 VGYVLQDPFLF-SGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSK 627 (709)
T ss_pred eeEEcccchhh-cCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccC
Confidence 99999998877 4688999875321100 0112 23333 246799999999999999999
Q ss_pred cceeccccccCCCCeeEEecCCchHHHHHHHHHHHHH--cCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCce
Q 038045 165 GIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQR--VGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTY 242 (621)
Q Consensus 165 G~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~e--rG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~a 242 (621)
|.++++||+++.||. +..+++.+.+.+ .|+|.+.|+|+.... +-+|++.+|+.|++.+.++..
T Consensus 628 P~ILlLDEaTSaLD~----------~sE~~I~~~L~~~~~~~T~I~IaHRl~ti-----~~adrIiVl~~Gkiv~~gs~~ 692 (709)
T COG2274 628 PKILLLDEATSALDP----------ETEAIILQNLLQILQGRTVIIIAHRLSTI-----RSADRIIVLDQGKIVEQGSHE 692 (709)
T ss_pred CCEEEEeCcccccCH----------hHHHHHHHHHHHHhcCCeEEEEEccchHh-----hhccEEEEccCCceeccCCHH
Confidence 999999999999997 233334443333 369999999997765 567889999999999998887
Q ss_pred eE
Q 038045 243 DI 244 (621)
Q Consensus 243 DI 244 (621)
++
T Consensus 693 el 694 (709)
T COG2274 693 EL 694 (709)
T ss_pred HH
Confidence 76
No 231
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.84 E-value=1.7e-21 Score=216.32 Aligned_cols=190 Identities=17% Similarity=0.155 Sum_probs=147.1
Q ss_pred ecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC---CCeeEEEECC----------------
Q 038045 39 QDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM---PSIAVISMDN---------------- 99 (621)
Q Consensus 39 ~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl---P~sGvI~lDg---------------- 99 (621)
.+++++.|+...+++++||.+.+|+ ++||+||||||||||+++|+|++ |+.|.|.+++
T Consensus 3 ~~~l~~~~~~~~~l~~is~~i~~Ge---~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g 79 (520)
T TIGR03269 3 VKNLTKKFDGKEVLKNISFTIEEGE---VLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVG 79 (520)
T ss_pred EEEEEEEECCeEeeeceeEEEcCCC---EEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccc
Confidence 4678888888889999999999999 99999999999999999999994 7899998862
Q ss_pred -------cc-----------------cccccccccCCC-CcccccchHHHHHHHHhc--CC--------------CccCc
Q 038045 100 -------YN-----------------DSSRVVDGNFDD-PRLTDYDTLLENVRDLRE--GK--------------PVQVP 138 (621)
Q Consensus 100 -------~~-----------------~~~R~Ig~vfQd-p~l~d~~tV~enL~~L~~--gk--------------~V~~p 138 (621)
.. ..++.++|+||+ +.+++.+++.+|+.+... +. .+.+.
T Consensus 80 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 159 (520)
T TIGR03269 80 EPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLS 159 (520)
T ss_pred cccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh
Confidence 10 012358999997 678888899999976321 10 01111
Q ss_pred -cccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHH-HHcCCCceehHhHHHHH
Q 038045 139 -IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDI-QRVGQEPEEIIQQISET 216 (621)
Q Consensus 139 -~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl-~erG~Ti~~VtHd~eea 216 (621)
..+....++|+|++|++..+++++.+|.++++|||++.||+. ..+.+..+.+.+ ++.|.|++.++|+.+..
T Consensus 160 ~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~-------~~~~l~~~l~~l~~~~g~tviivtHd~~~~ 232 (520)
T TIGR03269 160 HRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQ-------TAKLVHNALEEAVKASGISMVLTSHWPEVI 232 (520)
T ss_pred hhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHH-------HHHHHHHHHHHHHHhcCcEEEEEeCCHHHH
Confidence 124456889999999999999999999999999999999973 234444445554 44699999999999887
Q ss_pred hccccccchhhhcCCCCceeeccCce
Q 038045 217 SAKNLSVDQIKAVYPEGHTETMEQTY 242 (621)
Q Consensus 217 ~~R~v~~~d~iavl~eg~Ie~~~~~a 242 (621)
. ..+|++..+.+|.+...+.+.
T Consensus 233 ~----~~~d~i~~l~~G~i~~~g~~~ 254 (520)
T TIGR03269 233 E----DLSDKAIWLENGEIKEEGTPD 254 (520)
T ss_pred H----HhcCEEEEEeCCEEeeecCHH
Confidence 6 667777788888776544443
No 232
>PLN02348 phosphoribulokinase
Probab=99.84 E-value=3e-20 Score=199.68 Aligned_cols=173 Identities=27% Similarity=0.473 Sum_probs=146.0
Q ss_pred CCCcceEEEEECCCCCcHHHHHHHHHhhCC-------------------CeeEEEECCcccccc----cccccCCCCccc
Q 038045 61 KNDGIILIGLAGPSGAGKTIFTEKILNFMP-------------------SIAVISMDNYNDSSR----VVDGNFDDPRLT 117 (621)
Q Consensus 61 ~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP-------------------~sGvI~lDg~~~~~R----~Ig~vfQdp~l~ 117 (621)
...++++|||.|+||||||||++.|+..+. ...+|++|||+...+ ..+..+.+|..+
T Consensus 45 ~~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr~~r~~~g~t~ldP~a~ 124 (395)
T PLN02348 45 ADDGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRAN 124 (395)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCCChhhHhhcCCccCCcccc
Confidence 346789999999999999999999999872 235799999975432 235566778888
Q ss_pred ccchHHHHHHHHhcCCCccCccccccccCccCCceeecCCccEEEEecceeccc-cccCCCCeeEEecCCchHHHHHHHH
Q 038045 118 DYDTLLENVRDLREGKPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSE-KLRPLLDLRVSVTGGVHFDLVKRVL 196 (621)
Q Consensus 118 d~~tV~enL~~L~~gk~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlD-Ep~s~LDlkV~Vd~~~d~~LirRI~ 196 (621)
++..+.+.|..++.++.+..|.|++..+.... ...+.+.+++|+||.+++.+ +++..+|.+||++++.+.++.|++.
T Consensus 125 dfDll~~~L~~Lk~G~~I~~PiYDh~tg~~~~--~e~I~p~~VVIVEGlh~L~~e~lr~l~D~~IyVd~~~dvrl~RRI~ 202 (395)
T PLN02348 125 NFDLMYEQVKALKEGKAVEKPIYNHVTGLLDP--PELIEPPKILVIEGLHPMYDERVRDLLDFSIYLDISDDVKFAWKIQ 202 (395)
T ss_pred cHHHHHHHHHHHHCCCcEEeeccccCCCCcCC--cEEcCCCcEEEEechhhccCccccccCcEEEEEECCHHHHHHHHHH
Confidence 88889999999999999999999999887654 33577899999999999886 5889999999999999999999999
Q ss_pred HHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEEe
Q 038045 197 RDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIYL 246 (621)
Q Consensus 197 Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIYi 246 (621)
|++.++|.+.+.+.++++.+. ..+..++.+....||+++
T Consensus 203 RD~~eRG~S~EeV~~~i~ar~-----------pd~~~yI~pqk~~ADiVI 241 (395)
T PLN02348 203 RDMAERGHSLESIKASIEARK-----------PDFDAYIDPQKQYADVVI 241 (395)
T ss_pred hhHhhcCCCHHHHHHHHHhcC-----------cchhhhcccccccCCEEE
Confidence 999999999999988876543 356778899999999864
No 233
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.84 E-value=1.8e-21 Score=193.72 Aligned_cols=184 Identities=14% Similarity=0.043 Sum_probs=143.8
Q ss_pred ecceeeeeCc----EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhCC----CeeEEEECCccc----cccc
Q 038045 39 QDPLSFEKGF----FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFMP----SIAVISMDNYND----SSRV 106 (621)
Q Consensus 39 ~~~lsf~~G~----~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP----~sGvI~lDg~~~----~~R~ 106 (621)
.++++|.+.. ..+++++||++++|+ +++|+||||||||||+++|+|+++ ..|.|.++|... .++.
T Consensus 6 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge---~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (226)
T cd03234 6 WWDVGLKAKNWNKYARILNDVSLHVESGQ---VMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82 (226)
T ss_pred eecceeeeecCccccccccCceEEEcCCe---EEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence 5667777643 689999999999999 999999999999999999999974 789999998642 2456
Q ss_pred ccccCCCCcccccchHHHHHHHHhc--C-C--C-------c---cCc------cccccccCccCCceeecCCccEEEEec
Q 038045 107 VDGNFDDPRLTDYDTLLENVRDLRE--G-K--P-------V---QVP------IYDFESSSRTGYRTVEVPSSRIVIIEG 165 (621)
Q Consensus 107 Ig~vfQdp~l~d~~tV~enL~~L~~--g-k--~-------V---~~p------~yd~~~~~rsggq~qrVa~ArVLIvEG 165 (621)
++|+||++.+++.+++.+|+.+... . . . . .++ ..+.....+|+|+++++..+++++.+|
T Consensus 83 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 162 (226)
T cd03234 83 VAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDP 162 (226)
T ss_pred EEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCC
Confidence 8999999999999999999985321 1 0 0 0 011 112234678999999999999999999
Q ss_pred ceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHH-HHHhccccccchhhhcCCCCcee
Q 038045 166 IYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQI-SETSAKNLSVDQIKAVYPEGHTE 236 (621)
Q Consensus 166 ~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~-eea~~R~v~~~d~iavl~eg~Ie 236 (621)
.++++|||++.||+. ....+..+.+.+.+.|.|++.++|+. .+.. .++|++.++++|.+.
T Consensus 163 ~illlDEP~~gLD~~-------~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~----~~~d~i~~l~~G~i~ 223 (226)
T cd03234 163 KVLILDEPTSGLDSF-------TALNLVSTLSQLARRNRIVILTIHQPRSDLF----RLFDRILLLSSGEIV 223 (226)
T ss_pred CEEEEeCCCcCCCHH-------HHHHHHHHHHHHHHCCCEEEEEecCCCHHHH----HhCCEEEEEeCCEEE
Confidence 999999999999973 23455556666666689999999998 4665 667777778777654
No 234
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=3.2e-21 Score=196.03 Aligned_cols=193 Identities=17% Similarity=0.175 Sum_probs=150.5
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-C-----CeeEEEECCccc--------
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-P-----SIAVISMDNYND-------- 102 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P-----~sGvI~lDg~~~-------- 102 (621)
...+++++.++...++++++|++.+|+ ++||+|+||||||||+++|+|++ | ..|.|.++|...
T Consensus 8 l~~~~l~~~~~~~~il~~isl~i~~Ge---~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (259)
T PRK14260 8 IKVKDLSFYYNTSKAIEGISMDIYRNK---VTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININ 84 (259)
T ss_pred EEEEEEEEEECCeEeecceEEEEcCCC---EEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchH
Confidence 346788888888889999999999999 99999999999999999999998 4 379999998632
Q ss_pred -ccccccccCCCCcccccchHHHHHHHHhc--C---C------------CccC-----ccccccccCccCCceeecCCcc
Q 038045 103 -SSRVVDGNFDDPRLTDYDTLLENVRDLRE--G---K------------PVQV-----PIYDFESSSRTGYRTVEVPSSR 159 (621)
Q Consensus 103 -~~R~Ig~vfQdp~l~d~~tV~enL~~L~~--g---k------------~V~~-----p~yd~~~~~rsggq~qrVa~Ar 159 (621)
.++.++|+||++.+|+ .++.+|+..... + + .+.+ ...+.....+|+|+++++..++
T Consensus 85 ~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar 163 (259)
T PRK14260 85 RLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIAR 163 (259)
T ss_pred hhhhheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHH
Confidence 1236899999999887 899999975311 0 0 0011 1123445678999999999999
Q ss_pred EEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCC-----CCc
Q 038045 160 IVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYP-----EGH 234 (621)
Q Consensus 160 VLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~-----eg~ 234 (621)
+++.+|.++++|||++.||+. ....+.++.+.+.+ +.|++.++|+++... .++|++.++. +|.
T Consensus 164 al~~~p~lllLDEPt~~LD~~-------~~~~l~~~l~~~~~-~~tiii~tH~~~~i~----~~~d~i~~l~~~~~~~G~ 231 (259)
T PRK14260 164 ALAIKPKVLLMDEPCSALDPI-------ATMKVEELIHSLRS-ELTIAIVTHNMQQAT----RVSDFTAFFSTDESRIGQ 231 (259)
T ss_pred HHhcCCCEEEEcCCCccCCHH-------HHHHHHHHHHHHhc-CCEEEEEeCCHHHHH----HhcCeEEEEeccCCCCce
Confidence 999999999999999999973 23445455555544 689999999999887 7778888886 477
Q ss_pred eeeccCceeEE
Q 038045 235 TETMEQTYDIY 245 (621)
Q Consensus 235 Ie~~~~~aDIY 245 (621)
+...+...+++
T Consensus 232 i~~~~~~~~~~ 242 (259)
T PRK14260 232 MVEFGVTTQIF 242 (259)
T ss_pred EEEeCCHHHHh
Confidence 77666666654
No 235
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.84 E-value=2.7e-21 Score=196.79 Aligned_cols=189 Identities=15% Similarity=0.116 Sum_probs=142.3
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccccccccccCCCCc
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDSSRVVDGNFDDPR 115 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~~R~Ig~vfQdp~ 115 (621)
...+++++.++...+++++||++++|+ +++|+||||||||||+++|+|++ |..|.|.+++ ...++|+||++.
T Consensus 5 l~~~~l~~~~~~~~vl~~vs~~i~~Ge---~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~----~~~i~~v~q~~~ 77 (251)
T PRK09544 5 VSLENVSVSFGQRRVLSDVSLELKPGK---ILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG----KLRIGYVPQKLY 77 (251)
T ss_pred EEEeceEEEECCceEEEeEEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC----ccCEEEeccccc
Confidence 346788888888889999999999999 99999999999999999999999 8999999987 246899999987
Q ss_pred cccc--chHHHHHHHHhcC---------CCccCc-cccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEe
Q 038045 116 LTDY--DTLLENVRDLREG---------KPVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSV 183 (621)
Q Consensus 116 l~d~--~tV~enL~~L~~g---------k~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~V 183 (621)
+++. .++.+++...... +.+.+. ..+.....+|+|+++++..+++++.+|.++++|||++.||+.
T Consensus 78 ~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~--- 154 (251)
T PRK09544 78 LDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVN--- 154 (251)
T ss_pred cccccChhHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHH---
Confidence 7654 3666665321100 011111 234456788999999999999999999999999999999973
Q ss_pred cCCchHHHHHHHHHHHHH-cCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 184 TGGVHFDLVKRVLRDIQR-VGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 184 d~~~d~~LirRI~Rdl~e-rG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
....+.++.+.+.+ .|.|++.++|+.+... .++|++.++.. .+...+...++
T Consensus 155 ----~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~----~~~d~i~~l~~-~i~~~g~~~~~ 207 (251)
T PRK09544 155 ----GQVALYDLIDQLRRELDCAVLMVSHDLHLVM----AKTDEVLCLNH-HICCSGTPEVV 207 (251)
T ss_pred ----HHHHHHHHHHHHHHhcCCEEEEEecCHHHHH----HhCCEEEEECC-ceEeeCCHHHH
Confidence 23344444444444 4899999999999876 56677777754 35444444443
No 236
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.84 E-value=1.5e-21 Score=189.12 Aligned_cols=159 Identities=17% Similarity=0.174 Sum_probs=124.2
Q ss_pred CcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc---------ccccccccCCCCc-
Q 038045 47 GFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND---------SSRVVDGNFDDPR- 115 (621)
Q Consensus 47 G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~---------~~R~Ig~vfQdp~- 115 (621)
+...+++++||++++|+ ++||+||||||||||+++|+|++ |+.|.|.++|... ..+.++|+||++.
T Consensus 3 ~~~~il~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 79 (190)
T TIGR01166 3 GGPEVLKGLNFAAERGE---VLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDD 79 (190)
T ss_pred CccceecceeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhh
Confidence 45679999999999999 99999999999999999999999 8999999998632 1245899999984
Q ss_pred ccccchHHHHHHHHhc--CC--------------CccCc-cccccccCccCCceeecCCccEEEEecceeccccccCCCC
Q 038045 116 LTDYDTLLENVRDLRE--GK--------------PVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLD 178 (621)
Q Consensus 116 l~d~~tV~enL~~L~~--gk--------------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LD 178 (621)
.+...++.+|+.+... +. .+.+. ..+.....+|+|+++++..+++++.+|.++++|||++.||
T Consensus 80 ~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 159 (190)
T TIGR01166 80 QLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLD 159 (190)
T ss_pred ccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 2334699999875321 10 01111 2344567889999999999999999999999999999999
Q ss_pred eeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHH
Q 038045 179 LRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISE 215 (621)
Q Consensus 179 lkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~ee 215 (621)
+. ..+.+..+.+.+.+.|.|++.++|+.+.
T Consensus 160 ~~-------~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 160 PA-------GREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred HH-------HHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 73 2345555555555668999999999753
No 237
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=3.3e-21 Score=214.73 Aligned_cols=184 Identities=15% Similarity=0.047 Sum_probs=144.9
Q ss_pred eecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccccccccccCCCCcc
Q 038045 38 IQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDSSRVVDGNFDDPRL 116 (621)
Q Consensus 38 v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~~R~Ig~vfQdp~l 116 (621)
..+++++.++...+++++||++++|+ ++||+||||||||||+++|+|++ |+.|.|.+++. ..++|++|++.+
T Consensus 3 ~i~~ls~~~~~~~il~~vsl~i~~Ge---~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----~~i~~~~q~~~~ 75 (530)
T PRK15064 3 STANITMQFGAKPLFENISVKFGGGN---RYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN----ERLGKLRQDQFA 75 (530)
T ss_pred EEEEEEEEeCCcEeEeCCEEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC----CEEEEEeccCCc
Confidence 35678888888889999999999999 99999999999999999999998 89999999873 358999999988
Q ss_pred cccchHHHHHHHHhc-------------C-----------------------------------CCccCcc-c-cccccC
Q 038045 117 TDYDTLLENVRDLRE-------------G-----------------------------------KPVQVPI-Y-DFESSS 146 (621)
Q Consensus 117 ~d~~tV~enL~~L~~-------------g-----------------------------------k~V~~p~-y-d~~~~~ 146 (621)
++..++.+++..... . ..+.++. . +.....
T Consensus 76 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~ 155 (530)
T PRK15064 76 FEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSE 155 (530)
T ss_pred CCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhh
Confidence 888898888764110 0 0011111 1 234578
Q ss_pred ccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchh
Q 038045 147 RTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQI 226 (621)
Q Consensus 147 rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~ 226 (621)
+|+|+++++..+++++.+|.++|+|||++.||+. ....+.+.+.+.|.|++.++|+.+... .++|+
T Consensus 156 LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~----------~~~~l~~~l~~~~~tiiivsHd~~~~~----~~~d~ 221 (530)
T PRK15064 156 VAPGWKLRVLLAQALFSNPDILLLDEPTNNLDIN----------TIRWLEDVLNERNSTMIIISHDRHFLN----SVCTH 221 (530)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHH----------HHHHHHHHHHhCCCeEEEEeCCHHHHH----hhcce
Confidence 8999999999999999999999999999999972 223334444566899999999998876 67777
Q ss_pred hhcCCCCcee-eccCce
Q 038045 227 KAVYPEGHTE-TMEQTY 242 (621)
Q Consensus 227 iavl~eg~Ie-~~~~~a 242 (621)
+.++.+|.+. ..+++.
T Consensus 222 i~~l~~g~i~~~~g~~~ 238 (530)
T PRK15064 222 MADLDYGELRVYPGNYD 238 (530)
T ss_pred EEEEeCCEEEEecCCHH
Confidence 7788888763 334443
No 238
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.84 E-value=1.6e-21 Score=191.37 Aligned_cols=183 Identities=14% Similarity=0.137 Sum_probs=140.7
Q ss_pred eecceeeeeCc--EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-------ccccc
Q 038045 38 IQDPLSFEKGF--FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-------SSRVV 107 (621)
Q Consensus 38 v~~~lsf~~G~--~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-------~~R~I 107 (621)
..+++++.++. ..+++++||.+++|+ +++|+|+||||||||+++|+|+. |..|.|.++|... .++.+
T Consensus 8 ~~~~l~~~~~~~~~~~l~~isl~i~~G~---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 84 (207)
T cd03369 8 EVENLSVRYAPDLPPVLKNVSFKVKAGE---KIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSL 84 (207)
T ss_pred EEEEEEEEeCCCCcccccCceEEECCCC---EEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 35667777653 479999999999999 99999999999999999999998 8999999998632 23569
Q ss_pred cccCCCCcccccchHHHHHHHHhcCCCc---cCccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEec
Q 038045 108 DGNFDDPRLTDYDTLLENVRDLREGKPV---QVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVT 184 (621)
Q Consensus 108 g~vfQdp~l~d~~tV~enL~~L~~gk~V---~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd 184 (621)
+|+||++.+++ .++.+|+......... ..-..+.....+|+|+++++..+++++.+|.++++|||++.||+.
T Consensus 85 ~~v~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~---- 159 (207)
T cd03369 85 TIIPQDPTLFS-GTIRSNLDPFDEYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYA---- 159 (207)
T ss_pred EEEecCCcccC-ccHHHHhcccCCCCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHH----
Confidence 99999998887 4999999653211000 000033445788999999999999999999999999999999973
Q ss_pred CCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceee
Q 038045 185 GGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTET 237 (621)
Q Consensus 185 ~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~ 237 (621)
..+.+.++.+.+. .|.|++.++|+.+... . +|++.++++|.+..
T Consensus 160 ---~~~~l~~~l~~~~-~~~tiii~th~~~~~~----~-~d~v~~l~~g~i~~ 203 (207)
T cd03369 160 ---TDALIQKTIREEF-TNSTILTIAHRLRTII----D-YDKILVMDAGEVKE 203 (207)
T ss_pred ---HHHHHHHHHHHhc-CCCEEEEEeCCHHHHh----h-CCEEEEEECCEEEe
Confidence 2344445555543 4889999999998764 3 56777777776543
No 239
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.83 E-value=1.2e-21 Score=202.37 Aligned_cols=191 Identities=13% Similarity=0.088 Sum_probs=149.1
Q ss_pred eecceeeee--CcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccc-------cccccc
Q 038045 38 IQDPLSFEK--GFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNYND-------SSRVVD 108 (621)
Q Consensus 38 v~~~lsf~~--G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~~~-------~~R~Ig 108 (621)
..+++++.+ +...+|+++||.|++|+ ++||+|+||||||||+++|+|+++..|.|.+||... .++.++
T Consensus 4 ~~~nls~~~~~~~~~~l~~isl~I~~Ge---~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (275)
T cd03289 4 TVKDLTAKYTEGGNAVLENISFSISPGQ---RVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFG 80 (275)
T ss_pred EEEEEEEEeCCCCCcceeceEEEEcCCC---EEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhEE
Confidence 356777777 55679999999999999 999999999999999999999997789999999632 234689
Q ss_pred ccCCCCcccccchHHHHHHHHhcC---------CCccCcc-cccccc-----------CccCCceeecCCccEEEEecce
Q 038045 109 GNFDDPRLTDYDTLLENVRDLREG---------KPVQVPI-YDFESS-----------SRTGYRTVEVPSSRIVIIEGIY 167 (621)
Q Consensus 109 ~vfQdp~l~d~~tV~enL~~L~~g---------k~V~~p~-yd~~~~-----------~rsggq~qrVa~ArVLIvEG~l 167 (621)
|+||++.+|+. |+.+|+...... +.+.+.. .+..+. .+|+|++|++..+|+++.+|.+
T Consensus 81 ~v~q~~~lf~~-tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i 159 (275)
T cd03289 81 VIPQKVFIFSG-TFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159 (275)
T ss_pred EECCCcccchh-hHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999874 999999643211 0111111 111122 3889999999999999999999
Q ss_pred eccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEE
Q 038045 168 ALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIY 245 (621)
Q Consensus 168 LLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIY 245 (621)
+++|||++.+|+. ..+.+.++.+.. ..+.|++.++|+.+... . +|++.+|++|.+.+.+.+.++.
T Consensus 160 lllDEpts~LD~~-------~~~~l~~~l~~~-~~~~tii~isH~~~~i~----~-~dri~vl~~G~i~~~g~~~~l~ 224 (275)
T cd03289 160 LLLDEPSAHLDPI-------TYQVIRKTLKQA-FADCTVILSEHRIEAML----E-CQRFLVIEENKVRQYDSIQKLL 224 (275)
T ss_pred EEEECccccCCHH-------HHHHHHHHHHHh-cCCCEEEEEECCHHHHH----h-CCEEEEecCCeEeecCCHHHHh
Confidence 9999999999973 223444444443 34899999999997664 3 7899999999999999988874
No 240
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.83 E-value=1.9e-21 Score=191.17 Aligned_cols=195 Identities=17% Similarity=0.195 Sum_probs=158.3
Q ss_pred eecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc-------cccccc
Q 038045 38 IQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS-------SRVVDG 109 (621)
Q Consensus 38 v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~-------~R~Ig~ 109 (621)
..++++..+|.+.+++++|+.+++|. +.+|+||||||||||+.+++.++ .++|.|.+||+... .+.+..
T Consensus 3 ~i~nv~K~y~~~~vl~~isl~i~~g~---iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSI 79 (252)
T COG4604 3 TIENVSKSYGTKVVLDDVSLDIPKGG---ITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSI 79 (252)
T ss_pred eehhhhHhhCCEEeeccceeeecCCc---eeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHH
Confidence 35678888999999999999999999 99999999999999999999999 79999999998421 133444
Q ss_pred cCCCCcccccchHHHHHHHHh----cCCCcc--------------C-ccccccccCccCCceeecCCccEEEEecceecc
Q 038045 110 NFDDPRLTDYDTLLENVRDLR----EGKPVQ--------------V-PIYDFESSSRTGYRTVEVPSSRIVIIEGIYALS 170 (621)
Q Consensus 110 vfQdp~l~d~~tV~enL~~L~----~gk~V~--------------~-p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLl 170 (621)
.-|.-......||++.+.|.+ .|+... + ..-++...++||||+|+.-.|-++.-+-.|+|+
T Consensus 80 LkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlL 159 (252)
T COG4604 80 LKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLL 159 (252)
T ss_pred HHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEe
Confidence 555555556677888777644 222111 0 112334578999999999999999999999999
Q ss_pred ccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEE
Q 038045 171 EKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIY 245 (621)
Q Consensus 171 DEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIY 245 (621)
|||.++||.+-.+ ...+-++|...+.|+|++.|.||+..++ ..+|.+..+..|.+..++.+.+++
T Consensus 160 DEPLNNLDmkHsv------~iMk~Lrrla~el~KtiviVlHDINfAS----~YsD~IVAlK~G~vv~~G~~~eii 224 (252)
T COG4604 160 DEPLNNLDMKHSV------QIMKILRRLADELGKTIVVVLHDINFAS----CYSDHIVALKNGKVVKQGSPDEII 224 (252)
T ss_pred cCcccccchHHHH------HHHHHHHHHHHHhCCeEEEEEecccHHH----hhhhheeeecCCEEEecCCHHHhc
Confidence 9999999997543 5677777778888999999999999998 778888889999999999998883
No 241
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.83 E-value=2.7e-21 Score=214.80 Aligned_cols=191 Identities=16% Similarity=0.147 Sum_probs=148.9
Q ss_pred eeecceeeeeC-----cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEEC-Ccc--------
Q 038045 37 PIQDPLSFEKG-----FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMD-NYN-------- 101 (621)
Q Consensus 37 ~v~~~lsf~~G-----~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lD-g~~-------- 101 (621)
...+++++.++ .+.+++++||++++|+ ++||+||||||||||+++|+|++ |..|.|.++ |..
T Consensus 280 l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge---~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~ 356 (520)
T TIGR03269 280 IKVRNVSKRYISVDRGVVKAVDNVSLEVKEGE---IFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPG 356 (520)
T ss_pred EEEeccEEEeccCCCCCceEEeeEEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccc
Confidence 44677877763 3679999999999999 99999999999999999999999 899999995 421
Q ss_pred -----cccccccccCCCCcccccchHHHHHHHHhc-C--------------CCccCc------cccccccCccCCceeec
Q 038045 102 -----DSSRVVDGNFDDPRLTDYDTLLENVRDLRE-G--------------KPVQVP------IYDFESSSRTGYRTVEV 155 (621)
Q Consensus 102 -----~~~R~Ig~vfQdp~l~d~~tV~enL~~L~~-g--------------k~V~~p------~yd~~~~~rsggq~qrV 155 (621)
..++.++|+||++.+++.+++.+|+..... . ..+.+. ..+....++|+|++|++
T Consensus 357 ~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv 436 (520)
T TIGR03269 357 PDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRV 436 (520)
T ss_pred hhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHH
Confidence 012458999999999999999999975210 0 011222 13455678999999999
Q ss_pred CCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHH-HcCCCceehHhHHHHHhccccccchhhhcCCCCc
Q 038045 156 PSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQ-RVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGH 234 (621)
Q Consensus 156 a~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~-erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~ 234 (621)
..+++++.+|.++++|||++.||+. ..+.+.++.+.+. +.|.|++.++|++..+. .++|++.++.+|.
T Consensus 437 ~laral~~~p~lLllDEPt~~LD~~-------~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~----~~~d~i~~l~~G~ 505 (520)
T TIGR03269 437 ALAQVLIKEPRIVILDEPTGTMDPI-------TKVDVTHSILKAREEMEQTFIIVSHDMDFVL----DVCDRAALMRDGK 505 (520)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHH-------HHHHHHHHHHHHHHHcCcEEEEEeCCHHHHH----HhCCEEEEEECCE
Confidence 9999999999999999999999973 2344455555554 45899999999999887 6778888888887
Q ss_pred eeeccCc
Q 038045 235 TETMEQT 241 (621)
Q Consensus 235 Ie~~~~~ 241 (621)
+...+.+
T Consensus 506 i~~~g~~ 512 (520)
T TIGR03269 506 IVKIGDP 512 (520)
T ss_pred EEEECCH
Confidence 6554433
No 242
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=3.4e-21 Score=213.50 Aligned_cols=190 Identities=11% Similarity=0.089 Sum_probs=149.1
Q ss_pred eeecceeeee---CcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-C-CeeEEEECCcccc--------
Q 038045 37 PIQDPLSFEK---GFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-P-SIAVISMDNYNDS-------- 103 (621)
Q Consensus 37 ~v~~~lsf~~---G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P-~sGvI~lDg~~~~-------- 103 (621)
...+++++.+ +...+++++||++++|+ ++||+||||||||||+++|+|++ | ++|.|.++|....
T Consensus 260 l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge---~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~ 336 (506)
T PRK13549 260 LEVRNLTAWDPVNPHIKRVDDVSFSLRRGE---ILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAI 336 (506)
T ss_pred EEEecCccccccccccccccceeeEEcCCc---EEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 3467787766 34579999999999999 99999999999999999999998 4 8999999985321
Q ss_pred cccccccCCCC---cccccchHHHHHHHHh-----c----CC------------CccCc--cccccccCccCCceeecCC
Q 038045 104 SRVVDGNFDDP---RLTDYDTLLENVRDLR-----E----GK------------PVQVP--IYDFESSSRTGYRTVEVPS 157 (621)
Q Consensus 104 ~R~Ig~vfQdp---~l~d~~tV~enL~~L~-----~----gk------------~V~~p--~yd~~~~~rsggq~qrVa~ 157 (621)
++.++|+||++ .+++..++.+|+.... . .. .+.+. ..+.....+|+|++|++..
T Consensus 337 ~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~l 416 (506)
T PRK13549 337 AQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVL 416 (506)
T ss_pred HCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHH
Confidence 23589999996 3677889999986421 0 00 01121 2344567899999999999
Q ss_pred ccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceee
Q 038045 158 SRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTET 237 (621)
Q Consensus 158 ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~ 237 (621)
+++++.+|.++++|||++.||+. ..+.+.++.+.+.+.|.|++.++|+++.+. ..+|++.++.+|.+..
T Consensus 417 A~al~~~p~lllLDEPt~~LD~~-------~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~----~~~d~v~~l~~G~i~~ 485 (506)
T PRK13549 417 AKCLLLNPKILILDEPTRGIDVG-------AKYEIYKLINQLVQQGVAIIVISSELPEVL----GLSDRVLVMHEGKLKG 485 (506)
T ss_pred HHHHhhCCCEEEEcCCCCCcCHh-------HHHHHHHHHHHHHHCCCEEEEECCCHHHHH----HhCCEEEEEECCEEEE
Confidence 99999999999999999999973 345556666666677999999999999887 6778888888887754
Q ss_pred ccC
Q 038045 238 MEQ 240 (621)
Q Consensus 238 ~~~ 240 (621)
.+.
T Consensus 486 ~~~ 488 (506)
T PRK13549 486 DLI 488 (506)
T ss_pred Eec
Confidence 433
No 243
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.83 E-value=3e-21 Score=191.68 Aligned_cols=184 Identities=17% Similarity=0.167 Sum_probs=140.1
Q ss_pred ccceeeecceeeeeCc---EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc------
Q 038045 33 HEIVPIQDPLSFEKGF---FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND------ 102 (621)
Q Consensus 33 ~~~~~v~~~lsf~~G~---~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~------ 102 (621)
++-....+++++.++. ..+++++||.+++|+ +++|+||||||||||+++|+|++ |..|.|.++|...
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~ 84 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGE---VTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHK 84 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHH
Confidence 3334556778887753 469999999999999 99999999999999999999999 8999999998631
Q ss_pred -ccccccccCCCCcccccchHHHHHHHHhcCCC-------------------c--cC-ccccccccCccCCceeecCCcc
Q 038045 103 -SSRVVDGNFDDPRLTDYDTLLENVRDLREGKP-------------------V--QV-PIYDFESSSRTGYRTVEVPSSR 159 (621)
Q Consensus 103 -~~R~Ig~vfQdp~l~d~~tV~enL~~L~~gk~-------------------V--~~-p~yd~~~~~rsggq~qrVa~Ar 159 (621)
..+.++|+||++.+|+ .++.+|+........ . .+ ...+.....+|+|+++++..++
T Consensus 85 ~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~lar 163 (226)
T cd03248 85 YLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIAR 163 (226)
T ss_pred HHHhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHH
Confidence 1346899999998876 599999874221100 0 11 1123345778999999999999
Q ss_pred EEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCC
Q 038045 160 IVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEG 233 (621)
Q Consensus 160 VLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg 233 (621)
+++.+|.++++|||+..||+. ..+.+.++.+.+.+ +.|++.++|+.+... . +|++.+++++
T Consensus 164 al~~~p~llllDEPt~~LD~~-------~~~~l~~~l~~~~~-~~tii~~sh~~~~~~----~-~d~i~~l~~g 224 (226)
T cd03248 164 ALIRNPQVLILDEATSALDAE-------SEQQVQQALYDWPE-RRTVLVIAHRLSTVE----R-ADQILVLDGG 224 (226)
T ss_pred HHhcCCCEEEEeCCcccCCHH-------HHHHHHHHHHHHcC-CCEEEEEECCHHHHH----h-CCEEEEecCC
Confidence 999999999999999999973 33455555555544 689999999988764 3 5666666554
No 244
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=4.4e-21 Score=198.60 Aligned_cols=192 Identities=15% Similarity=0.156 Sum_probs=148.6
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC------CCeeEEEECCccc--------
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM------PSIAVISMDNYND-------- 102 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl------P~sGvI~lDg~~~-------- 102 (621)
...+++++.++...+|+++||++.+|+ +++|+||||||||||+++|+|++ |..|.|.++|...
T Consensus 40 l~i~~l~~~~~~~~il~~is~~i~~Ge---~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~ 116 (285)
T PRK14254 40 IEARDLNVFYGDEQALDDVSMDIPENQ---VTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPV 116 (285)
T ss_pred EEEEEEEEEECCEeeEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchH
Confidence 346788888888889999999999999 99999999999999999999997 3689999998632
Q ss_pred -ccccccccCCCCcccccchHHHHHHHHhc--CC-------------CccC-----ccccccccCccCCceeecCCccEE
Q 038045 103 -SSRVVDGNFDDPRLTDYDTLLENVRDLRE--GK-------------PVQV-----PIYDFESSSRTGYRTVEVPSSRIV 161 (621)
Q Consensus 103 -~~R~Ig~vfQdp~l~d~~tV~enL~~L~~--gk-------------~V~~-----p~yd~~~~~rsggq~qrVa~ArVL 161 (621)
.++.++|+||++.+|+. ++.+|+..... +. .+.+ ...+.....+|+|+++++..++++
T Consensus 117 ~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL 195 (285)
T PRK14254 117 ALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAI 195 (285)
T ss_pred hhhccEEEEecCCccCcC-CHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHH
Confidence 13468999999988875 99999875321 10 0111 112445678899999999999999
Q ss_pred EEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhh-cCCCCceeeccC
Q 038045 162 IIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKA-VYPEGHTETMEQ 240 (621)
Q Consensus 162 IvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~ia-vl~eg~Ie~~~~ 240 (621)
+.+|.++++|||++.||.. ..+.+..+.+.+.+ +.|++.++|+.+.+. .++|++. ++.+|.+...+.
T Consensus 196 ~~~p~lLLLDEPts~LD~~-------~~~~l~~~L~~~~~-~~tiii~tH~~~~i~----~~~dri~v~l~~G~i~~~g~ 263 (285)
T PRK14254 196 APDPEVILMDEPASALDPV-------ATSKIEDLIEELAE-EYTVVIVTHNMQQAA----RISDKTAVFLTGGELVEFDD 263 (285)
T ss_pred HcCCCEEEEeCCCCCCCHH-------HHHHHHHHHHHHhc-CCEEEEEeCCHHHHH----hhcCEEEEEeeCCEEEEeCC
Confidence 9999999999999999973 23455555555544 479999999998876 6667654 457787766555
Q ss_pred ceeE
Q 038045 241 TYDI 244 (621)
Q Consensus 241 ~aDI 244 (621)
..++
T Consensus 264 ~~~~ 267 (285)
T PRK14254 264 TDKI 267 (285)
T ss_pred HHHH
Confidence 5554
No 245
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=4.5e-21 Score=195.61 Aligned_cols=197 Identities=16% Similarity=0.177 Sum_probs=153.3
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-C-----CeeEEEECCccc--------
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-P-----SIAVISMDNYND-------- 102 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P-----~sGvI~lDg~~~-------- 102 (621)
...+++++.++...+++++||++++|+ +++|+|+||||||||+++|+|+. | ..|.|.++|...
T Consensus 17 l~~~~l~~~~~~~~vl~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~ 93 (265)
T PRK14252 17 SEVNKLNFYYGGYQALKNINMMVHEKQ---VTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVD 93 (265)
T ss_pred EEEEEEEEEECCeeeeeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccC
Confidence 456788888888889999999999999 99999999999999999999998 4 689999987421
Q ss_pred ---ccccccccCCCCcccccchHHHHHHHHhc--CC---------------CccC-----ccccccccCccCCceeecCC
Q 038045 103 ---SSRVVDGNFDDPRLTDYDTLLENVRDLRE--GK---------------PVQV-----PIYDFESSSRTGYRTVEVPS 157 (621)
Q Consensus 103 ---~~R~Ig~vfQdp~l~d~~tV~enL~~L~~--gk---------------~V~~-----p~yd~~~~~rsggq~qrVa~ 157 (621)
..+.++|++|++.+|+. ++.+|+..... +. .... +..+.....+|+|+++++..
T Consensus 94 ~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~l 172 (265)
T PRK14252 94 PIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCI 172 (265)
T ss_pred HHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHH
Confidence 13458999999998885 99999975321 00 0111 11233456789999999999
Q ss_pred ccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceee
Q 038045 158 SRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTET 237 (621)
Q Consensus 158 ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~ 237 (621)
+++++.+|.++++|||++.||.. ..+.+.++.+.+.+ +.|++.++|+.++.. ..+|++.++.+|.+..
T Consensus 173 aral~~~p~llllDEPt~gLD~~-------~~~~l~~~l~~l~~-~~tiiivth~~~~~~----~~~d~i~~l~~G~i~~ 240 (265)
T PRK14252 173 ARALATDPEILLFDEPTSALDPI-------ATASIEELISDLKN-KVTILIVTHNMQQAA----RVSDYTAYMYMGELIE 240 (265)
T ss_pred HHHHHcCCCEEEEeCCCccCCHH-------HHHHHHHHHHHHHh-CCEEEEEecCHHHHH----HhCCEEEEEECCEEEE
Confidence 99999999999999999999973 23344444444444 689999999999887 6788888999998887
Q ss_pred ccCceeEEecCC
Q 038045 238 MEQTYDIYLLPP 249 (621)
Q Consensus 238 ~~~~aDIYi~P~ 249 (621)
.+...+++..|.
T Consensus 241 ~g~~~~~~~~~~ 252 (265)
T PRK14252 241 FGATDTIFIKPK 252 (265)
T ss_pred eCCHHHHHhCCC
Confidence 777777654443
No 246
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.83 E-value=2.8e-21 Score=193.36 Aligned_cols=186 Identities=20% Similarity=0.254 Sum_probs=142.1
Q ss_pred ecceeeeeC---cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-------ccccc
Q 038045 39 QDPLSFEKG---FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-------SSRVV 107 (621)
Q Consensus 39 ~~~lsf~~G---~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-------~~R~I 107 (621)
.+++++.++ ...+++++||++++|+ ++||+|+||||||||+++|+|++ |..|.|.++|... ..+.+
T Consensus 3 i~~l~~~~~~~~~~~~l~~i~~~i~~Ge---~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (238)
T cd03249 3 FKNVSFRYPSRPDVPILKGLSLTIPPGK---TVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQI 79 (238)
T ss_pred EEEEEEecCCCCCccceeceEEEecCCC---EEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhE
Confidence 356666664 2469999999999999 99999999999999999999999 8999999998532 12468
Q ss_pred cccCCCCcccccchHHHHHHHHhcCCC---c-------c-------Cc-----cccccccCccCCceeecCCccEEEEec
Q 038045 108 DGNFDDPRLTDYDTLLENVRDLREGKP---V-------Q-------VP-----IYDFESSSRTGYRTVEVPSSRIVIIEG 165 (621)
Q Consensus 108 g~vfQdp~l~d~~tV~enL~~L~~gk~---V-------~-------~p-----~yd~~~~~rsggq~qrVa~ArVLIvEG 165 (621)
+|+||++.+++ .++.+|+........ . . .| ..+.....+|+|+++++..+++++.+|
T Consensus 80 ~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p 158 (238)
T cd03249 80 GLVSQEPVLFD-GTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNP 158 (238)
T ss_pred EEECCchhhhh-hhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCC
Confidence 99999988776 599999875321110 0 0 00 112234678999999999999999999
Q ss_pred ceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCc
Q 038045 166 IYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQT 241 (621)
Q Consensus 166 ~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~ 241 (621)
.++++|||++.||+. ..+.+.++.+.+. .|.+++.++|+.+... .+|++.++.+|.+...++.
T Consensus 159 ~llllDEP~~gLD~~-------~~~~l~~~l~~~~-~g~~vi~~sh~~~~~~-----~~d~v~~l~~G~i~~~~~~ 221 (238)
T cd03249 159 KILLLDEATSALDAE-------SEKLVQEALDRAM-KGRTTIVIAHRLSTIR-----NADLIAVLQNGQVVEQGTH 221 (238)
T ss_pred CEEEEeCccccCCHH-------HHHHHHHHHHHhc-CCCEEEEEeCCHHHHh-----hCCEEEEEECCEEEEeCCH
Confidence 999999999999973 2345555555555 6899999999988763 3677788888877554433
No 247
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=3.1e-21 Score=192.50 Aligned_cols=189 Identities=19% Similarity=0.234 Sum_probs=143.6
Q ss_pred ecceeeeeC-cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-------ccccccc
Q 038045 39 QDPLSFEKG-FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-------SSRVVDG 109 (621)
Q Consensus 39 ~~~lsf~~G-~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-------~~R~Ig~ 109 (621)
.+++++.++ ...+++++||++++|+ +++|+||||||||||+++|+|+. |..|.|.++|... .++.++|
T Consensus 3 ~~~l~~~~~~~~~~l~~i~~~i~~Ge---~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 3 FENVTFAYDPGRPVLKDVSFTIPAGK---KVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred EEEEEEEeCCCCceeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 356777764 4669999999999999 99999999999999999999999 8999999998632 1245899
Q ss_pred cCCCCcccccchHHHHHHHHhcCCC----------ccC-------c-c----ccccccCccCCceeecCCccEEEEecce
Q 038045 110 NFDDPRLTDYDTLLENVRDLREGKP----------VQV-------P-I----YDFESSSRTGYRTVEVPSSRIVIIEGIY 167 (621)
Q Consensus 110 vfQdp~l~d~~tV~enL~~L~~gk~----------V~~-------p-~----yd~~~~~rsggq~qrVa~ArVLIvEG~l 167 (621)
+||++.+++ .++.+|+.+...... ... + . .+.....+|+|+++++..+++++.+|.+
T Consensus 80 ~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 80 VPQDTVLFN-DTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred ECCCChhhc-chHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 999998886 699999875321110 000 0 0 1122457899999999999999999999
Q ss_pred eccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 168 ALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 168 LLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
+++|||++.||+. ....+..+.+.+.+ |.|++.++|+.+... . +|++.++.+|.+...+...++
T Consensus 159 lllDEP~~~LD~~-------~~~~l~~~l~~~~~-~~tiii~sh~~~~~~----~-~d~~~~l~~g~i~~~~~~~~~ 222 (236)
T cd03253 159 LLLDEATSALDTH-------TEREIQAALRDVSK-GRTTIVIAHRLSTIV----N-ADKIIVLKDGRIVERGTHEEL 222 (236)
T ss_pred EEEeCCcccCCHH-------HHHHHHHHHHHhcC-CCEEEEEcCCHHHHH----h-CCEEEEEECCEEEeeCCHHHH
Confidence 9999999999973 23344444445545 899999999998774 3 677788888877655444443
No 248
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=99.83 E-value=1.1e-20 Score=189.52 Aligned_cols=186 Identities=20% Similarity=0.298 Sum_probs=144.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC-C-----CeeEEEECCcccccc---ccccc--CCCCcccccchHHHHHHHHhc-CCC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFM-P-----SIAVISMDNYNDSSR---VVDGN--FDDPRLTDYDTLLENVRDLRE-GKP 134 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLl-P-----~sGvI~lDg~~~~~R---~Ig~v--fQdp~l~d~~tV~enL~~L~~-gk~ 134 (621)
+|||+||||||||||++.|++.+ + ....|++|||+.... ..+.. +..|..++...+.+.+..++. ++.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~~~~~~~~~~~~~~~g~p~~~d~~~l~~~L~~l~~g~~~ 80 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYPNKELIERGLMDRKGFPESYDMEALLKFLKDIKSGKKN 80 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccCcHHHHHHhhhhhcCCCcccCCHHHHHHHHHHHHCCCCc
Confidence 58999999999999999999987 2 356788899965432 22322 345778888888899998888 478
Q ss_pred ccCccccccccCccCCceeecCCccEEEEecceecccc------ccCCCCeeEEecCCchHH---HHHHHHHHHHHcCCC
Q 038045 135 VQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEK------LRPLLDLRVSVTGGVHFD---LVKRVLRDIQRVGQE 205 (621)
Q Consensus 135 V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDE------p~s~LDlkV~Vd~~~d~~---LirRI~Rdl~erG~T 205 (621)
+..|.|++..+.+.......++..+++|+||.++|+++ +.+.+|++||++++.+.. +.+|..|+.+++|.+
T Consensus 81 v~~P~yd~~~~~~~~~~~~~~~~~~vvIvEG~~~l~~~~~~~~~l~~~~D~~ifvd~~~~~~~~rl~~R~~r~~~~~~r~ 160 (220)
T cd02025 81 VKIPVYSHLTYDVIPGEKQTVDQPDILIIEGLNVLQTGQNPRLFVSDFFDFSIYVDADEDDIEKWYIKRFLKLRETAFSD 160 (220)
T ss_pred EEccccceeccccCCCCceecCCCCEEEECCchhcCCcccchhhHHHhCCeEEEEECCHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999988877765555788899999999999875 889999999999999885 777888888899999
Q ss_pred ceehHhHHH-----HHhccccc-cchhhhcCCCCceeeccCceeEEecCCCCCc
Q 038045 206 PEEIIQQIS-----ETSAKNLS-VDQIKAVYPEGHTETMEQTYDIYLLPPGEDP 253 (621)
Q Consensus 206 i~~VtHd~e-----ea~~R~v~-~~d~iavl~eg~Ie~~~~~aDIYi~P~~~~~ 253 (621)
+..+.+++. ++..++.. +.....++.+.+|.|++..||+ ++|.+.+.
T Consensus 161 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~AD~-ii~~~~~~ 213 (220)
T cd02025 161 PDSYFHRYAKMSEEEAIAFAREVWKNINLKNLRENILPTRNRADL-ILEKGADH 213 (220)
T ss_pred chhhhhcccCCCHHHHHHHHHHHHHHcCHHHHhhhccCCccceEE-EEEeCCCC
Confidence 998887753 22211112 2334456777899999999999 56666543
No 249
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.83 E-value=3.5e-21 Score=183.52 Aligned_cols=149 Identities=15% Similarity=0.176 Sum_probs=121.4
Q ss_pred ecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc--------cccccc
Q 038045 39 QDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS--------SRVVDG 109 (621)
Q Consensus 39 ~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~--------~R~Ig~ 109 (621)
.+++++.++...++++++|++++|+ +++|+||||||||||+++|+|+. |..|.|.++|.... ++.++|
T Consensus 3 ~~~l~~~~~~~~vl~~i~~~i~~Ge---~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~ 79 (163)
T cd03216 3 LRGITKRFGGVKALDGVSLSVRRGE---VHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAM 79 (163)
T ss_pred EEEEEEEECCeEEEeeeEEEEeCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEE
Confidence 4678888887889999999999999 99999999999999999999999 89999999985321 112333
Q ss_pred cCCCCcccccchHHHHHHHHhcCCCccCccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchH
Q 038045 110 NFDDPRLTDYDTLLENVRDLREGKPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHF 189 (621)
Q Consensus 110 vfQdp~l~d~~tV~enL~~L~~gk~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~ 189 (621)
+|| +|+|+++++..+++++.+|.++++|||++.||.. ..
T Consensus 80 ~~q----------------------------------LS~G~~qrl~laral~~~p~illlDEP~~~LD~~-------~~ 118 (163)
T cd03216 80 VYQ----------------------------------LSVGERQMVEIARALARNARLLILDEPTAALTPA-------EV 118 (163)
T ss_pred EEe----------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHH-------HH
Confidence 333 8899999999999999999999999999999962 34
Q ss_pred HHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCce
Q 038045 190 DLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHT 235 (621)
Q Consensus 190 ~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~I 235 (621)
+.+..+.+.+.+.|.|++.++|+.+... .++|++..+.+|.+
T Consensus 119 ~~l~~~l~~~~~~~~tiii~sh~~~~~~----~~~d~~~~l~~g~i 160 (163)
T cd03216 119 ERLFKVIRRLRAQGVAVIFISHRLDEVF----EIADRVTVLRDGRV 160 (163)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCHHHHH----HhCCEEEEEECCEE
Confidence 4555566666566899999999998765 55666666666654
No 250
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.83 E-value=5.1e-21 Score=214.69 Aligned_cols=179 Identities=15% Similarity=0.096 Sum_probs=142.4
Q ss_pred eeecceeeeeC-cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccccccccccCCCC
Q 038045 37 PIQDPLSFEKG-FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDSSRVVDGNFDDP 114 (621)
Q Consensus 37 ~v~~~lsf~~G-~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~~R~Ig~vfQdp 114 (621)
...+++++.++ ...+|+++||++++|+ ++||+||||||||||+++|+|++ |+.|.|.+++ ...++|++|++
T Consensus 7 l~i~~l~~~y~~~~~il~~vs~~i~~Ge---~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~----~~~i~~v~Q~~ 79 (556)
T PRK11819 7 YTMNRVSKVVPPKKQILKDISLSFFPGA---KIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP----GIKVGYLPQEP 79 (556)
T ss_pred EEEeeEEEEeCCCCeeeeCceEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC----CCEEEEEecCC
Confidence 45678999887 7889999999999999 99999999999999999999999 8999999875 24689999999
Q ss_pred cccccchHHHHHHHHhc----------------CCC------------------------------------ccCccccc
Q 038045 115 RLTDYDTLLENVRDLRE----------------GKP------------------------------------VQVPIYDF 142 (621)
Q Consensus 115 ~l~d~~tV~enL~~L~~----------------gk~------------------------------------V~~p~yd~ 142 (621)
.+++..++.+|+.+... ... +.++..+.
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~ 159 (556)
T PRK11819 80 QLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDA 159 (556)
T ss_pred CCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccC
Confidence 99999999999865210 000 00112345
Q ss_pred cccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccc
Q 038045 143 ESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLS 222 (621)
Q Consensus 143 ~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~ 222 (621)
..+.+|+|+++++..+++++.+|.++++|||++.||+. ....+. ..+.+.+.|++.++|+.+... .
T Consensus 160 ~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~-------~~~~l~---~~L~~~~~tviiisHd~~~~~----~ 225 (556)
T PRK11819 160 KVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAE-------SVAWLE---QFLHDYPGTVVAVTHDRYFLD----N 225 (556)
T ss_pred chhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChH-------HHHHHH---HHHHhCCCeEEEEeCCHHHHH----h
Confidence 56789999999999999999999999999999999973 223333 333344569999999998886 6
Q ss_pred cchhhhcCCCCcee
Q 038045 223 VDQIKAVYPEGHTE 236 (621)
Q Consensus 223 ~~d~iavl~eg~Ie 236 (621)
.+|++.++..|.+.
T Consensus 226 ~~d~i~~l~~g~i~ 239 (556)
T PRK11819 226 VAGWILELDRGRGI 239 (556)
T ss_pred hcCeEEEEeCCEEE
Confidence 66777777777653
No 251
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=3.1e-21 Score=196.64 Aligned_cols=198 Identities=15% Similarity=0.208 Sum_probs=153.1
Q ss_pred eeeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCc------cc------
Q 038045 36 VPIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNY------ND------ 102 (621)
Q Consensus 36 ~~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~------~~------ 102 (621)
....+++++.+|...+++++||.+.+|+ +++|+||||||||||+++|+|+. |..|.|.++|. ..
T Consensus 10 ~i~~~~~~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 10 VFNISRLYLYINDKAILKDITIKIPNNS---IFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred heeeeeEEEecCCceeEeceEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 3456788888999999999999999999 99999999999999999999998 78876666652 11
Q ss_pred -ccccccccCCCCcccccchHHHHHHHHhc--C-CC--------------ccC-----ccccccccCccCCceeecCCcc
Q 038045 103 -SSRVVDGNFDDPRLTDYDTLLENVRDLRE--G-KP--------------VQV-----PIYDFESSSRTGYRTVEVPSSR 159 (621)
Q Consensus 103 -~~R~Ig~vfQdp~l~d~~tV~enL~~L~~--g-k~--------------V~~-----p~yd~~~~~rsggq~qrVa~Ar 159 (621)
.++.++|++|++.+++..++.+|+..... + .. ..+ ...+......|+|+++++..++
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~lar 166 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIAR 166 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHH
Confidence 13468999999999988999999985321 1 00 111 1123445678899999999999
Q ss_pred EEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeecc
Q 038045 160 IVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETME 239 (621)
Q Consensus 160 VLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~ 239 (621)
+++.+|.++++|||+..||.. ..+.+..+.+.+.+ +.|++.++|+..... ..+|++.+++.+.+...+
T Consensus 167 al~~~P~llllDEPt~~LD~~-------~~~~l~~~l~~~~~-~~tiilvsh~~~~~~----~~~d~v~~l~~g~i~~~g 234 (257)
T PRK14246 167 ALALKPKVLLMDEPTSMIDIV-------NSQAIEKLITELKN-EIAIVIVSHNPQQVA----RVADYVAFLYNGELVEWG 234 (257)
T ss_pred HHHcCCCEEEEcCCCccCCHH-------HHHHHHHHHHHHhc-CcEEEEEECCHHHHH----HhCCEEEEEECCEEEEEC
Confidence 999999999999999999973 23444455555443 689999999998876 667888888888887777
Q ss_pred CceeEEecC
Q 038045 240 QTYDIYLLP 248 (621)
Q Consensus 240 ~~aDIYi~P 248 (621)
...+++-.|
T Consensus 235 ~~~~~~~~~ 243 (257)
T PRK14246 235 SSNEIFTSP 243 (257)
T ss_pred CHHHHHhCC
Confidence 666664333
No 252
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.83 E-value=1.7e-21 Score=190.79 Aligned_cols=173 Identities=14% Similarity=0.167 Sum_probs=131.7
Q ss_pred ecceeeeeCc-----EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccccccccccCC
Q 038045 39 QDPLSFEKGF-----FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDSSRVVDGNFD 112 (621)
Q Consensus 39 ~~~lsf~~G~-----~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~~R~Ig~vfQ 112 (621)
.+++++.++. ..+++++||++++|+ +++|+||||||||||+++|+|+. |..|.|.++| .++|++|
T Consensus 3 ~~~l~~~~~~~~~~~~~il~~~s~~i~~G~---~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g------~i~~~~q 73 (204)
T cd03250 3 VEDASFTWDSGEQETSFTLKDINLEVPKGE---LVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG------SIAYVSQ 73 (204)
T ss_pred EeEEEEecCCCCccccceeeeeeEEECCCC---EEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC------EEEEEec
Confidence 4567777654 379999999999999 99999999999999999999998 8999999998 6899999
Q ss_pred CCcccccchHHHHHHHHhcCC---------CccC-------c-----cccccccCccCCceeecCCccEEEEecceeccc
Q 038045 113 DPRLTDYDTLLENVRDLREGK---------PVQV-------P-----IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSE 171 (621)
Q Consensus 113 dp~l~d~~tV~enL~~L~~gk---------~V~~-------p-----~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlD 171 (621)
++.+++ .++.+|+.+..... .... | ..+......|+|+++++..+++++.+|.++++|
T Consensus 74 ~~~l~~-~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllD 152 (204)
T cd03250 74 EPWIQN-GTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLD 152 (204)
T ss_pred Cchhcc-CcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 998874 59999987532110 0000 0 112234678999999999999999999999999
Q ss_pred cccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCC
Q 038045 172 KLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPE 232 (621)
Q Consensus 172 Ep~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~e 232 (621)
||++.||+. ....+...+.+...+.|.|++.++|+..... . +|++.++++
T Consensus 153 EP~~~LD~~------~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~----~-~d~i~~l~~ 202 (204)
T cd03250 153 DPLSAVDAH------VGRHIFENCILGLLLNNKTRILVTHQLQLLP----H-ADQIVVLDN 202 (204)
T ss_pred CccccCCHH------HHHHHHHHHHHHhccCCCEEEEEeCCHHHHh----h-CCEEEEEeC
Confidence 999999972 1122333345544455899999999987765 3 455544443
No 253
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.83 E-value=2.8e-21 Score=205.64 Aligned_cols=193 Identities=18% Similarity=0.217 Sum_probs=160.1
Q ss_pred cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCcc----------cccccccccCCCCc--
Q 038045 48 FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNYN----------DSSRVVDGNFDDPR-- 115 (621)
Q Consensus 48 ~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~~----------~~~R~Ig~vfQdp~-- 115 (621)
.+.++++|||++++|+ .+||+|.||||||||.++|..++++.|.|.++|.. +.++.+..|||||.
T Consensus 299 ~~~AVd~isl~L~~gq---TlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygS 375 (534)
T COG4172 299 HLRAVDGISLTLRRGQ---TLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGS 375 (534)
T ss_pred heEEeccceeEecCCC---eEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccccChhhhhhhhhhceEEEeCCCCC
Confidence 4679999999999999 99999999999999999999999777999999872 23456889999995
Q ss_pred ccccchHHHHHHHHhc-CC-----------------CccC--ccccccccCccCCceeecCCccEEEEecceeccccccC
Q 038045 116 LTDYDTLLENVRDLRE-GK-----------------PVQV--PIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRP 175 (621)
Q Consensus 116 l~d~~tV~enL~~L~~-gk-----------------~V~~--p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s 175 (621)
+-|.+++.+.|...+. .. .+.+ ...++.+++.||||.|++++||++|++|.++++|||++
T Consensus 376 LsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTS 455 (534)
T COG4172 376 LSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTS 455 (534)
T ss_pred CCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCch
Confidence 7899999999987331 11 1111 23445578999999999999999999999999999999
Q ss_pred CCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEEecCCCCCc
Q 038045 176 LLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIYLLPPGEDP 253 (621)
Q Consensus 176 ~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIYi~P~~~~~ 253 (621)
.||..+. ...+.-++...++.|.+..+|+||+..+. ..|+.+.||.+|.|...+...++|-.|...+.
T Consensus 456 ALD~SVQ------aQvv~LLr~LQ~k~~LsYLFISHDL~Vvr----Al~~~viVm~~GkiVE~G~~~~if~~P~~~YT 523 (534)
T COG4172 456 ALDRSVQ------AQVLDLLRDLQQKHGLSYLFISHDLAVVR----ALCHRVIVMRDGKIVEQGPTEAVFANPQHEYT 523 (534)
T ss_pred HhhHHHH------HHHHHHHHHHHHHhCCeEEEEeccHHHHH----HhhceEEEEeCCEEeeeCCHHHHhcCCCcHHH
Confidence 9998542 23444444455677999999999999887 88999999999999999999999888877654
No 254
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.83 E-value=3.6e-21 Score=213.07 Aligned_cols=203 Identities=16% Similarity=0.236 Sum_probs=161.4
Q ss_pred eecceeeee----CcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhCC-C----eeEEEECCccc------
Q 038045 38 IQDPLSFEK----GFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFMP-S----IAVISMDNYND------ 102 (621)
Q Consensus 38 v~~~lsf~~----G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP-~----sGvI~lDg~~~------ 102 (621)
-+++|+.++ +...++++|||++.+|| ++||+|.|||||||+++.|.|++| . .|.|.++|...
T Consensus 7 ~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE---~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~ 83 (539)
T COG1123 7 EVENLTVEFATDGGRVPAVRDVSFEVEPGE---ILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER 83 (539)
T ss_pred EEeceEEEEecCCcceeeeecceEEecCCc---EEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence 345554443 33479999999999999 999999999999999999999993 3 69999998621
Q ss_pred -----ccccccccCCCCc--ccccchHHHHHHHHh--cC---------------CCccCcc--c-cccccCccCCceeec
Q 038045 103 -----SSRVVDGNFDDPR--LTDYDTLLENVRDLR--EG---------------KPVQVPI--Y-DFESSSRTGYRTVEV 155 (621)
Q Consensus 103 -----~~R~Ig~vfQdp~--l~d~~tV~enL~~L~--~g---------------k~V~~p~--y-d~~~~~rsggq~qrV 155 (621)
..+.++|+||+|. +.|.+++.+.+.... ++ +.+.+|. . +..++++|||++||+
T Consensus 84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv 163 (539)
T COG1123 84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRV 163 (539)
T ss_pred HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHH
Confidence 1246899999985 456678777776522 11 1223332 2 346899999999999
Q ss_pred CCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCce
Q 038045 156 PSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHT 235 (621)
Q Consensus 156 a~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~I 235 (621)
-+|.+++.+|.+++.|||+..||+.+ ..+.+.-+++..++.|+++++|+||++.+. .++|++.+|+.|.+
T Consensus 164 ~iAmALa~~P~LLIaDEPTTaLDvt~------q~qIL~llk~l~~e~g~a~l~ITHDl~Vva----~~aDrv~Vm~~G~i 233 (539)
T COG1123 164 MIAMALALKPKLLIADEPTTALDVTT------QAQILDLLKDLQRELGMAVLFITHDLGVVA----ELADRVVVMYKGEI 233 (539)
T ss_pred HHHHHHhCCCCEEEECCCccccCHHH------HHHHHHHHHHHHHHcCcEEEEEcCCHHHHH----HhcCeEEEEECCEE
Confidence 99999999999999999999999853 234555555556788999999999999998 89999999999999
Q ss_pred eeccCceeEEecCCCCCc
Q 038045 236 ETMEQTYDIYLLPPGEDP 253 (621)
Q Consensus 236 e~~~~~aDIYi~P~~~~~ 253 (621)
...+...+++-.|...+.
T Consensus 234 VE~G~~~~i~~~p~hpYT 251 (539)
T COG1123 234 VETGPTEEILSNPQHPYT 251 (539)
T ss_pred EEecCHHHHHhccCCccc
Confidence 999999999877777654
No 255
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=5.9e-21 Score=195.02 Aligned_cols=194 Identities=17% Similarity=0.163 Sum_probs=149.8
Q ss_pred eeeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-C-----CeeEEEECCccc-------
Q 038045 36 VPIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-P-----SIAVISMDNYND------- 102 (621)
Q Consensus 36 ~~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P-----~sGvI~lDg~~~------- 102 (621)
....+.+++.+|.+.+++++||++++|+ ++||+|+||||||||+++|+|++ | ..|.|.++|...
T Consensus 8 ~~~~~~~~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 8 VMDCKLDKIFYGNFMAVRDSHVPIRKNE---ITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred eEEEEeEEEEeCCEEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 3456667788888899999999999999 99999999999999999999998 5 689999999632
Q ss_pred --ccccccccCCCCcccccchHHHHHHHHhcC---C------------CccCc-----cccccccCccCCceeecCCccE
Q 038045 103 --SSRVVDGNFDDPRLTDYDTLLENVRDLREG---K------------PVQVP-----IYDFESSSRTGYRTVEVPSSRI 160 (621)
Q Consensus 103 --~~R~Ig~vfQdp~l~d~~tV~enL~~L~~g---k------------~V~~p-----~yd~~~~~rsggq~qrVa~ArV 160 (621)
.++.++|+||++.+| ..++.+|+.+.... . ...+. ..+.....+|+|+++++..+++
T Consensus 85 ~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~lara 163 (261)
T PRK14263 85 VVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARA 163 (261)
T ss_pred HhhhhceEEEecCCccc-cccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHH
Confidence 124589999999887 58999999753210 0 01110 1122345689999999999999
Q ss_pred EEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCC--------C
Q 038045 161 VIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYP--------E 232 (621)
Q Consensus 161 LIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~--------e 232 (621)
++.+|.++++|||++.||+. ....+.++.+.+. .+.|++.++|+++... .++|++.++. +
T Consensus 164 l~~~p~llllDEPtsgLD~~-------~~~~l~~~l~~~~-~~~tii~isH~~~~i~----~~~d~v~~l~~~~~~~~~~ 231 (261)
T PRK14263 164 IATEPEVLLLDEPCSALDPI-------ATRRVEELMVELK-KDYTIALVTHNMQQAI----RVADTTAFFSVDISQGTRT 231 (261)
T ss_pred HHcCCCEEEEeCCCccCCHH-------HHHHHHHHHHHHh-cCCeEEEEeCCHHHHH----HhCCEEEEEecccccccCC
Confidence 99999999999999999973 2334444445543 3789999999999876 6778887884 6
Q ss_pred CceeeccCceeEE
Q 038045 233 GHTETMEQTYDIY 245 (621)
Q Consensus 233 g~Ie~~~~~aDIY 245 (621)
|.+...+...+++
T Consensus 232 G~i~~~g~~~~~~ 244 (261)
T PRK14263 232 GYLVEMGPTAQIF 244 (261)
T ss_pred ceEEEeCCHHHHH
Confidence 7777776666653
No 256
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.83 E-value=5.5e-21 Score=207.65 Aligned_cols=185 Identities=16% Similarity=0.108 Sum_probs=153.8
Q ss_pred eecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc--------cccccc
Q 038045 38 IQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND--------SSRVVD 108 (621)
Q Consensus 38 v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~--------~~R~Ig 108 (621)
..++++..|+...++++|||++++|+ |-+|+|.||||||||+++|.|++ |++|.|.+||+.. .+..||
T Consensus 6 ~~~~itK~f~~~~And~V~l~v~~Ge---IHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIG 82 (501)
T COG3845 6 EMRGITKRFPGVVANDDVSLSVKKGE---IHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIG 82 (501)
T ss_pred EEeccEEEcCCEEecCceeeeecCCc---EEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCc
Confidence 45667778889999999999999999 99999999999999999999999 9999999999832 124699
Q ss_pred ccCCCCcccccchHHHHHHHHhcCC---Cc----------------cCc-cccccccCccCCceeecCCccEEEEeccee
Q 038045 109 GNFDDPRLTDYDTLLENVRDLREGK---PV----------------QVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYA 168 (621)
Q Consensus 109 ~vfQdp~l~d~~tV~enL~~L~~gk---~V----------------~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lL 168 (621)
||+||+.+++..||.|||....... .+ .++ ..+....+++-|++|+|.+-++|.-.+.++
T Consensus 83 MVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iL 162 (501)
T COG3845 83 MVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLL 162 (501)
T ss_pred EEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEE
Confidence 9999999999999999997643221 00 011 023335677888999999999999999999
Q ss_pred ccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCcee
Q 038045 169 LSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTE 236 (621)
Q Consensus 169 LlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie 236 (621)
++|||++.|-+ .+.+-+-.+.+.+.+.|+|+++|+|.+.|+. .++|++.++..|.+.
T Consensus 163 ILDEPTaVLTP-------~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~----~iaDrvTVLR~Gkvv 219 (501)
T COG3845 163 ILDEPTAVLTP-------QEADELFEILRRLAAEGKTIIFITHKLKEVM----AIADRVTVLRRGKVV 219 (501)
T ss_pred EEcCCcccCCH-------HHHHHHHHHHHHHHHCCCEEEEEeccHHHHH----HhhCeeEEEeCCeEE
Confidence 99999988875 4555555666677889999999999999999 899999999988653
No 257
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.83 E-value=8.9e-21 Score=190.55 Aligned_cols=190 Identities=10% Similarity=0.073 Sum_probs=140.2
Q ss_pred ecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhh--C-CCeeEEEECCcccc--------cccc
Q 038045 39 QDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNF--M-PSIAVISMDNYNDS--------SRVV 107 (621)
Q Consensus 39 ~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagL--l-P~sGvI~lDg~~~~--------~R~I 107 (621)
.+++++.++...+++++||.+++|+ +++|+|+||||||||+++|+|+ + |..|.|.++|.... ++.+
T Consensus 4 ~~nl~~~~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (248)
T PRK09580 4 IKDLHVSVEDKAILRGLNLEVRPGE---VHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGI 80 (248)
T ss_pred EEEEEEEeCCeeeeecceeEEcCCC---EEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcce
Confidence 5678888877889999999999999 9999999999999999999999 3 78999999986321 1358
Q ss_pred cccCCCCcccccchHHHHHHHHhc------C-C----------------CccCc-c-ccccc-cCccCCceeecCCccEE
Q 038045 108 DGNFDDPRLTDYDTLLENVRDLRE------G-K----------------PVQVP-I-YDFES-SSRTGYRTVEVPSSRIV 161 (621)
Q Consensus 108 g~vfQdp~l~d~~tV~enL~~L~~------g-k----------------~V~~p-~-yd~~~-~~rsggq~qrVa~ArVL 161 (621)
+|++|++..++..+...++..... . . .+.++ . .+... ..+|+|+++++..++++
T Consensus 81 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral 160 (248)
T PRK09580 81 FMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMA 160 (248)
T ss_pred EEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHH
Confidence 899999877766554444322110 0 0 00111 1 11122 26899999999999999
Q ss_pred EEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhcccccc-chhhhcCCCCceeeccC
Q 038045 162 IIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSV-DQIKAVYPEGHTETMEQ 240 (621)
Q Consensus 162 IvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~-~d~iavl~eg~Ie~~~~ 240 (621)
+.+|.++++|||++.||.. ..+.+.++.+.+.+.|.|++.++|+..... .. +|++.++.+|.+...++
T Consensus 161 ~~~p~illLDEPt~~LD~~-------~~~~l~~~l~~l~~~~~tiii~sH~~~~~~----~~~~d~i~~l~~g~i~~~g~ 229 (248)
T PRK09580 161 VLEPELCILDESDSGLDID-------ALKIVADGVNSLRDGKRSFIIVTHYQRILD----YIKPDYVHVLYQGRIVKSGD 229 (248)
T ss_pred HcCCCEEEEeCCCccCCHH-------HHHHHHHHHHHHHhCCCEEEEEeCCHHHHH----hhhCCEEEEEECCeEEEeCC
Confidence 9999999999999999972 234455555556666899999999988765 33 67777787777765544
Q ss_pred ce
Q 038045 241 TY 242 (621)
Q Consensus 241 ~a 242 (621)
+.
T Consensus 230 ~~ 231 (248)
T PRK09580 230 FT 231 (248)
T ss_pred HH
Confidence 43
No 258
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.83 E-value=5.6e-21 Score=210.66 Aligned_cols=193 Identities=11% Similarity=0.076 Sum_probs=147.9
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc-------ccccc
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS-------SRVVD 108 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~-------~R~Ig 108 (621)
...+++++.|+...+|+++||++++|+ ++||+||||||||||+++|+|++ |+.|.|.++|.... .+.++
T Consensus 4 l~~~~l~~~~~~~~il~~vsl~i~~Ge---~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~ 80 (490)
T PRK10938 4 LQISQGTFRLSDTKTLQLPSLTLNAGD---SWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVS 80 (490)
T ss_pred EEEEeEEEEcCCeeecccceEEEcCCC---EEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhc
Confidence 346788999988889999999999999 99999999999999999999999 89999999875321 23488
Q ss_pred ccCCCCcc--c-c-----cchHHHHHHHHhc--------CCCccCc-cccccccCccCCceeecCCccEEEEecceeccc
Q 038045 109 GNFDDPRL--T-D-----YDTLLENVRDLRE--------GKPVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSE 171 (621)
Q Consensus 109 ~vfQdp~l--~-d-----~~tV~enL~~L~~--------gk~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlD 171 (621)
++||++.. + . ..++.+++..... -..+.+. ..+....++|+|++|+++.+++++.+|.++++|
T Consensus 81 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD 160 (490)
T PRK10938 81 DEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILD 160 (490)
T ss_pred eeccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 99998653 1 1 3567766531100 0112222 235567899999999999999999999999999
Q ss_pred cccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCcee
Q 038045 172 KLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYD 243 (621)
Q Consensus 172 Ep~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aD 243 (621)
||++.||+. ..+.+..+.+.+.+.|.|++.++|+++... ..+|++.++.+|.+...+...+
T Consensus 161 EPt~~LD~~-------~~~~l~~~l~~~~~~g~tvii~tH~~~~~~----~~~d~v~~l~~G~i~~~~~~~~ 221 (490)
T PRK10938 161 EPFDGLDVA-------SRQQLAELLASLHQSGITLVLVLNRFDEIP----DFVQFAGVLADCTLAETGEREE 221 (490)
T ss_pred CCcccCCHH-------HHHHHHHHHHHHHhcCCeEEEEeCCHHHHH----hhCCEEEEEECCEEEEeCCHHH
Confidence 999999973 334555555555566999999999998887 6778888888887765554443
No 259
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.83 E-value=2.4e-21 Score=193.47 Aligned_cols=181 Identities=19% Similarity=0.296 Sum_probs=139.5
Q ss_pred EEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-C----CeeEEEECCccc----c-cccccccCCCCc--ccc
Q 038045 51 VIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-P----SIAVISMDNYND----S-SRVVDGNFDDPR--LTD 118 (621)
Q Consensus 51 ~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P----~sGvI~lDg~~~----~-~R~Ig~vfQdp~--l~d 118 (621)
+++++||++++|+ +++|+||||||||||+++|+|++ | ..|.|.++|... . .+.++|++|++. +++
T Consensus 1 ~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 77 (230)
T TIGR02770 1 LVQDLNLSLKRGE---VLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNP 77 (230)
T ss_pred CccceeEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCc
Confidence 4789999999999 99999999999999999999999 7 799999999632 1 246899999985 445
Q ss_pred cchHHHHHHHHhc--CC--------------CccCc----cccccccCccCCceeecCCccEEEEecceeccccccCCCC
Q 038045 119 YDTLLENVRDLRE--GK--------------PVQVP----IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLD 178 (621)
Q Consensus 119 ~~tV~enL~~L~~--gk--------------~V~~p----~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LD 178 (621)
..++.+++..... +. ...++ ..+.....+|+|+++++..+++++.+|.++++|||++.||
T Consensus 78 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD 157 (230)
T TIGR02770 78 LFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLD 157 (230)
T ss_pred ccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccC
Confidence 6788887754221 10 01121 1244557789999999999999999999999999999999
Q ss_pred eeEEecCCchHHHHHHHHHHHHH-cCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEE
Q 038045 179 LRVSVTGGVHFDLVKRVLRDIQR-VGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIY 245 (621)
Q Consensus 179 lkV~Vd~~~d~~LirRI~Rdl~e-rG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIY 245 (621)
.. ....+.++.+.+.+ .|.|++.++|+.++.. ..+|++.++.+|.+...+...+++
T Consensus 158 ~~-------~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~----~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 158 VV-------NQARVLKLLRELRQLFGTGILLITHDLGVVA----RIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred HH-------HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH----HhCCEEEEEECCEEEEeCCHHHHH
Confidence 73 23344444444444 5899999999999886 677888889888887666666653
No 260
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.83 E-value=2.9e-21 Score=190.74 Aligned_cols=180 Identities=16% Similarity=0.142 Sum_probs=136.5
Q ss_pred ecceeeeeCc--EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-------cccccc
Q 038045 39 QDPLSFEKGF--FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-------SSRVVD 108 (621)
Q Consensus 39 ~~~lsf~~G~--~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-------~~R~Ig 108 (621)
.+++++.++. +.+++++||++++|+ ++||+||||||||||+++|+|+. |..|.|.++|... .++.++
T Consensus 5 ~~~l~~~~~~~~~~~l~~i~~~i~~G~---~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (220)
T cd03245 5 FRNVSFSYPNQEIPALDNVSLTIRAGE---KVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIG 81 (220)
T ss_pred EEEEEEEcCCCCcccccceEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEE
Confidence 4567776654 569999999999999 99999999999999999999998 8999999998632 124689
Q ss_pred ccCCCCcccccchHHHHHHHHhcCC----------CccCc-cccc-----------cccCccCCceeecCCccEEEEecc
Q 038045 109 GNFDDPRLTDYDTLLENVRDLREGK----------PVQVP-IYDF-----------ESSSRTGYRTVEVPSSRIVIIEGI 166 (621)
Q Consensus 109 ~vfQdp~l~d~~tV~enL~~L~~gk----------~V~~p-~yd~-----------~~~~rsggq~qrVa~ArVLIvEG~ 166 (621)
|++|++.+++ .++.+|+....... ...+. ..+. ....+|+|+++++..+++++.+|.
T Consensus 82 ~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 82 YVPQDVTLFY-GTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EeCCCCcccc-chHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 9999998886 59999986532110 00110 0111 235889999999999999999999
Q ss_pred eeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCce
Q 038045 167 YALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHT 235 (621)
Q Consensus 167 lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~I 235 (621)
++++|||++.||+. ..+.+.++.+.+.+ +.|++.++|+.+.. .++|++..+.+|.+
T Consensus 161 llllDEPt~~LD~~-------~~~~l~~~l~~~~~-~~tii~~sH~~~~~-----~~~d~v~~l~~g~i 216 (220)
T cd03245 161 ILLLDEPTSAMDMN-------SEERLKERLRQLLG-DKTLIIITHRPSLL-----DLVDRIIVMDSGRI 216 (220)
T ss_pred EEEEeCccccCCHH-------HHHHHHHHHHHhcC-CCEEEEEeCCHHHH-----HhCCEEEEEeCCeE
Confidence 99999999999973 33455555555544 37999999998753 34666666766654
No 261
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.83 E-value=1.2e-20 Score=193.66 Aligned_cols=193 Identities=12% Similarity=0.106 Sum_probs=142.4
Q ss_pred eeecceeeeeC-cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc----ccccccc
Q 038045 37 PIQDPLSFEKG-FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS----SRVVDGN 110 (621)
Q Consensus 37 ~v~~~lsf~~G-~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~----~R~Ig~v 110 (621)
...+++++.++ ...+++++||++++|+ ++||+||||||||||+++|+|++ |..|.|.+||.... .+.++|+
T Consensus 7 l~~~~l~~~~~~~~~il~~vsl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v 83 (272)
T PRK15056 7 IVVNDVTVTWRNGHTALRDASFTVPGGS---IAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYV 83 (272)
T ss_pred EEEEeEEEEecCCcEEEEeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEe
Confidence 44677888774 5789999999999999 99999999999999999999998 89999999996421 2358999
Q ss_pred CCCCccc--ccchHHHHHHHHhc--------C------------CCccCc-cccccccCccCCceeecCCccEEEEecce
Q 038045 111 FDDPRLT--DYDTLLENVRDLRE--------G------------KPVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIY 167 (621)
Q Consensus 111 fQdp~l~--d~~tV~enL~~L~~--------g------------k~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~l 167 (621)
+|++.+. ...++.+++..... . +.+.+. ..+.....+|+|+++++..+++++.+|.+
T Consensus 84 ~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~l 163 (272)
T PRK15056 84 PQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQV 163 (272)
T ss_pred ccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 9987642 12245555431100 0 001111 12445678899999999999999999999
Q ss_pred eccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 168 ALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 168 LLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
+++|||++.||+. ..+.+..+.+.+.+.|.|++.++|+.+... .++|++..+ +|.+...++..++
T Consensus 164 lllDEPt~~LD~~-------~~~~l~~~L~~~~~~g~tviivsH~~~~~~----~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 164 ILLDEPFTGVDVK-------TEARIISLLRELRDEGKTMLVSTHNLGSVT----EFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred EEEeCCCccCCHH-------HHHHHHHHHHHHHhCCCEEEEEeCCHHHHH----HhCCEEEEE-CCEEEeecCHHhc
Confidence 9999999999973 234555555556566899999999998776 566666444 6776655555554
No 262
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.82 E-value=4.1e-21 Score=220.63 Aligned_cols=189 Identities=17% Similarity=0.150 Sum_probs=150.7
Q ss_pred eeecceeeeeCc--EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-------cccc
Q 038045 37 PIQDPLSFEKGF--FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-------SSRV 106 (621)
Q Consensus 37 ~v~~~lsf~~G~--~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-------~~R~ 106 (621)
...++++|.|+. ..+|+++||++++|+ .|+|+|+||||||||++.|+|++ |..|.|.+||... .++.
T Consensus 478 I~~~~vsf~y~~~~~~vL~~isl~i~~Ge---~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 554 (710)
T TIGR03796 478 VELRNITFGYSPLEPPLIENFSLTLQPGQ---RVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANS 554 (710)
T ss_pred EEEEEEEEecCCCCCCcccceeEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhh
Confidence 467889998863 679999999999999 89999999999999999999999 9999999999732 2467
Q ss_pred ccccCCCCcccccchHHHHHHHHhcCC----------------Cc-cCc-ccccc----ccCccCCceeecCCccEEEEe
Q 038045 107 VDGNFDDPRLTDYDTLLENVRDLREGK----------------PV-QVP-IYDFE----SSSRTGYRTVEVPSSRIVIIE 164 (621)
Q Consensus 107 Ig~vfQdp~l~d~~tV~enL~~L~~gk----------------~V-~~p-~yd~~----~~~rsggq~qrVa~ArVLIvE 164 (621)
++|++|++.+|+ .|+++||....... .+ ..| .++.. -..+||||+|+++.+|+++-+
T Consensus 555 i~~v~Q~~~lf~-gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~ 633 (710)
T TIGR03796 555 VAMVDQDIFLFE-GTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRN 633 (710)
T ss_pred eeEEecCChhhh-ccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhC
Confidence 999999999885 69999997532110 00 112 12322 245899999999999999999
Q ss_pred cceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 165 GIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 165 G~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
|.++++|||++.||.. ..+++.+.+.+.++|++.|+|+..... .+|++.++++|.+...+++.++
T Consensus 634 p~iliLDEptS~LD~~----------te~~i~~~l~~~~~T~IiitHrl~~i~-----~~D~Iivl~~G~i~~~G~~~~L 698 (710)
T TIGR03796 634 PSILILDEATSALDPE----------TEKIIDDNLRRRGCTCIIVAHRLSTIR-----DCDEIIVLERGKVVQRGTHEEL 698 (710)
T ss_pred CCEEEEECccccCCHH----------HHHHHHHHHHhcCCEEEEEecCHHHHH-----hCCEEEEEeCCEEEEecCHHHH
Confidence 9999999999999972 233444444456899999999987653 4788888999999888887776
No 263
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1e-20 Score=209.78 Aligned_cols=185 Identities=14% Similarity=0.124 Sum_probs=145.4
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc--------cccc
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS--------SRVV 107 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~--------~R~I 107 (621)
...+++++.++ .+++++||++++|+ ++||+||||||||||+++|+|++ |+.|.|.++|.... ++.+
T Consensus 266 l~~~~l~~~~~--~~l~~isl~i~~Ge---~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i 340 (510)
T PRK09700 266 FEVRNVTSRDR--KKVRDISFSVCRGE---ILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGM 340 (510)
T ss_pred EEEeCccccCC--CcccceeEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCc
Confidence 44667776543 48999999999999 99999999999999999999999 89999999985321 2468
Q ss_pred cccCCCC---cccccchHHHHHHHHhc----------C---------------CCccCc--cccccccCccCCceeecCC
Q 038045 108 DGNFDDP---RLTDYDTLLENVRDLRE----------G---------------KPVQVP--IYDFESSSRTGYRTVEVPS 157 (621)
Q Consensus 108 g~vfQdp---~l~d~~tV~enL~~L~~----------g---------------k~V~~p--~yd~~~~~rsggq~qrVa~ 157 (621)
+|+||++ .+++..++.+|+..... + +.+.++ ..+....++|+|++|++..
T Consensus 341 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~l 420 (510)
T PRK09700 341 AYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLI 420 (510)
T ss_pred EEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHH
Confidence 9999984 57888999999864210 0 001121 2344567899999999999
Q ss_pred ccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceee
Q 038045 158 SRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTET 237 (621)
Q Consensus 158 ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~ 237 (621)
+++++.+|.++++|||++.||+. ..+.+.++.+.+.+.|.|++.++|+.+.+. ..+|++.++++|.+..
T Consensus 421 Aral~~~p~lLlLDEPt~~LD~~-------~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~----~~~d~i~~l~~G~i~~ 489 (510)
T PRK09700 421 SKWLCCCPEVIIFDEPTRGIDVG-------AKAEIYKVMRQLADDGKVILMVSSELPEII----TVCDRIAVFCEGRLTQ 489 (510)
T ss_pred HHHHhcCCCEEEECCCCCCcCHH-------HHHHHHHHHHHHHHCCCEEEEEcCCHHHHH----hhCCEEEEEECCEEEE
Confidence 99999999999999999999973 234555555555567999999999998887 6778888888876653
No 264
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.82 E-value=6.2e-21 Score=193.16 Aligned_cols=180 Identities=13% Similarity=0.134 Sum_probs=143.0
Q ss_pred EEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCcccc-------cccccccCCCCcccccchHH
Q 038045 51 VIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNYNDS-------SRVVDGNFDDPRLTDYDTLL 123 (621)
Q Consensus 51 ~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~~~~-------~R~Ig~vfQdp~l~d~~tV~ 123 (621)
+|+++||++++|+ ++||+||||||||||+++|+|+.|..|.|.++|.... .+.++|+||++..++..++.
T Consensus 11 ~l~~vsl~i~~Ge---i~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGE---ILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCC---EEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 7999999999999 9999999999999999999999866899999996321 23589999998888888999
Q ss_pred HHHHHHhcCC-C--------------ccCc-cccccccCccCCceeecCCccEEEE-------ecceeccccccCCCCee
Q 038045 124 ENVRDLREGK-P--------------VQVP-IYDFESSSRTGYRTVEVPSSRIVII-------EGIYALSEKLRPLLDLR 180 (621)
Q Consensus 124 enL~~L~~gk-~--------------V~~p-~yd~~~~~rsggq~qrVa~ArVLIv-------EG~lLLlDEp~s~LDlk 180 (621)
+|+....... . +.+. ..+.....+|+|+++++..+++++. +|.++++|||++.||+.
T Consensus 88 ~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~ 167 (248)
T PRK03695 88 QYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVA 167 (248)
T ss_pred HHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHH
Confidence 9988642110 0 1111 1234457889999999999999997 66999999999999973
Q ss_pred EEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 181 VSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 181 V~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
..+.+..+.+.+.+.|.|++.++|++++.. ..+|++.++.+|.+...+...++
T Consensus 168 -------~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~----~~~d~i~~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 168 -------QQAALDRLLSELCQQGIAVVMSSHDLNHTL----RHADRVWLLKQGKLLASGRRDEV 220 (248)
T ss_pred -------HHHHHHHHHHHHHhCCCEEEEEecCHHHHH----HhCCEEEEEECCEEEEECCHHHH
Confidence 234555555555566899999999999877 77888888999988776665554
No 265
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.82 E-value=6.8e-21 Score=183.75 Aligned_cols=166 Identities=19% Similarity=0.255 Sum_probs=127.0
Q ss_pred cceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc-------cccccccC
Q 038045 40 DPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS-------SRVVDGNF 111 (621)
Q Consensus 40 ~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~-------~R~Ig~vf 111 (621)
+++++.++...+++++||.+++|+ +++|+||||||||||+++|+|+. |..|.|.++|.... .+.++|+|
T Consensus 3 ~~l~~~~~~~~~l~~~~~~i~~G~---~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~ 79 (180)
T cd03214 3 ENLSVGYGGRTVLDDLSLSIEAGE---IVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVP 79 (180)
T ss_pred eEEEEEECCeeeEeeeEEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHH
Confidence 467777777789999999999999 99999999999999999999999 89999999986321 12467777
Q ss_pred CCCcccccchHHHHHHHHhcCCCccCccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchHHH
Q 038045 112 DDPRLTDYDTLLENVRDLREGKPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDL 191 (621)
Q Consensus 112 Qdp~l~d~~tV~enL~~L~~gk~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~L 191 (621)
| .+..+. +. ...+.....+|+|++++++.+++++.+|.++++|||+..||.. ..+.
T Consensus 80 q------------~l~~~g----l~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~-------~~~~ 135 (180)
T cd03214 80 Q------------ALELLG----LA-HLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIA-------HQIE 135 (180)
T ss_pred H------------HHHHcC----CH-hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH-------HHHH
Confidence 6 111111 00 1122345678999999999999999999999999999999962 2345
Q ss_pred HHHHHHHHHHc-CCCceehHhHHHHHhccccccchhhhcCCCCcee
Q 038045 192 VKRVLRDIQRV-GQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTE 236 (621)
Q Consensus 192 irRI~Rdl~er-G~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie 236 (621)
+.++.+.+.+. |.|++.++|+.+... .++|++.++..+.+.
T Consensus 136 ~~~~l~~~~~~~~~tiii~sh~~~~~~----~~~d~~~~l~~g~i~ 177 (180)
T cd03214 136 LLELLRRLARERGKTVVMVLHDLNLAA----RYADRVILLKDGRIV 177 (180)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHHH----HhCCEEEEEECCEEE
Confidence 55555555444 889999999998876 566666777766553
No 266
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.82 E-value=1.2e-20 Score=211.53 Aligned_cols=179 Identities=16% Similarity=0.089 Sum_probs=141.5
Q ss_pred eeecceeeeeC-cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccccccccccCCCC
Q 038045 37 PIQDPLSFEKG-FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDSSRVVDGNFDDP 114 (621)
Q Consensus 37 ~v~~~lsf~~G-~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~~R~Ig~vfQdp 114 (621)
...+++++.++ .+.+|+++||++++|+ ++||+||||||||||+++|+|++ |+.|.|.+++ ...++|++|++
T Consensus 5 i~~~nls~~~~~~~~il~~is~~i~~Ge---~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~----~~~i~~v~Q~~ 77 (552)
T TIGR03719 5 YTMNRVSKVVPPKKEILKDISLSFFPGA---KIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP----GIKVGYLPQEP 77 (552)
T ss_pred EEEeeEEEecCCCCeeecCceEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC----CCEEEEEeccC
Confidence 44677888887 6789999999999999 99999999999999999999999 8999999875 24699999999
Q ss_pred cccccchHHHHHHHHhc----------------C---CC---------------------------------ccCccccc
Q 038045 115 RLTDYDTLLENVRDLRE----------------G---KP---------------------------------VQVPIYDF 142 (621)
Q Consensus 115 ~l~d~~tV~enL~~L~~----------------g---k~---------------------------------V~~p~yd~ 142 (621)
.+++..|+.+|+.+... . .. +.++..+.
T Consensus 78 ~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 157 (552)
T TIGR03719 78 QLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDA 157 (552)
T ss_pred CCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccC
Confidence 99999999999875210 0 00 01112345
Q ss_pred cccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccc
Q 038045 143 ESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLS 222 (621)
Q Consensus 143 ~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~ 222 (621)
....+|+|+++++..+++++.+|.++++|||++.||+. ....+...+.+.+.|++.++|+.+... .
T Consensus 158 ~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~----------~~~~l~~~L~~~~~tvIiisHd~~~~~----~ 223 (552)
T TIGR03719 158 DVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAE----------SVAWLEQHLQEYPGTVVAVTHDRYFLD----N 223 (552)
T ss_pred chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChH----------HHHHHHHHHHhCCCeEEEEeCCHHHHH----h
Confidence 56789999999999999999999999999999999973 222333334444569999999998876 5
Q ss_pred cchhhhcCCCCcee
Q 038045 223 VDQIKAVYPEGHTE 236 (621)
Q Consensus 223 ~~d~iavl~eg~Ie 236 (621)
++|++.++.+|.+.
T Consensus 224 ~~d~v~~l~~g~i~ 237 (552)
T TIGR03719 224 VAGWILELDRGRGI 237 (552)
T ss_pred hcCeEEEEECCEEE
Confidence 66666777777643
No 267
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.82 E-value=1.1e-20 Score=188.67 Aligned_cols=180 Identities=16% Similarity=0.120 Sum_probs=135.7
Q ss_pred eecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccccccccccCCCCcc
Q 038045 38 IQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDSSRVVDGNFDDPRL 116 (621)
Q Consensus 38 v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~~R~Ig~vfQdp~l 116 (621)
..++++..||...+++++||++++|+ +++|+||||||||||+++|+|+. |..|.|.++|....... .....
T Consensus 24 ~~~~~~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~-----~~~~~ 95 (224)
T cd03220 24 GILGRKGEVGEFWALKDVSFEVPRGE---RIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLG-----LGGGF 95 (224)
T ss_pred hhhhhhhhcCCeEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhc-----ccccC
Confidence 45667788888999999999999999 99999999999999999999998 89999999986422111 11233
Q ss_pred cccchHHHHHHHHhc--C-C-------------CccC-ccccccccCccCCceeecCCccEEEEecceeccccccCCCCe
Q 038045 117 TDYDTLLENVRDLRE--G-K-------------PVQV-PIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDL 179 (621)
Q Consensus 117 ~d~~tV~enL~~L~~--g-k-------------~V~~-p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDl 179 (621)
++..++.+|+..... + . .+.+ +..+.....+|+|+++++..+++++.+|.++++|||++.||+
T Consensus 96 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~ 175 (224)
T cd03220 96 NPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDA 175 (224)
T ss_pred CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 456788888765321 1 0 0111 123344578899999999999999999999999999999996
Q ss_pred eEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCcee
Q 038045 180 RVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTE 236 (621)
Q Consensus 180 kV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie 236 (621)
. ..+.+..+.+.+.+.|.|++.++|+.++.. .++|++.++.+|.+.
T Consensus 176 ~-------~~~~~~~~l~~~~~~~~tiii~sH~~~~~~----~~~d~i~~l~~G~i~ 221 (224)
T cd03220 176 A-------FQEKCQRRLRELLKQGKTVILVSHDPSSIK----RLCDRALVLEKGKIR 221 (224)
T ss_pred H-------HHHHHHHHHHHHHhCCCEEEEEeCCHHHHH----HhCCEEEEEECCEEE
Confidence 2 234444455555556899999999998876 566777777777654
No 268
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=8.4e-21 Score=213.59 Aligned_cols=201 Identities=19% Similarity=0.243 Sum_probs=160.5
Q ss_pred cceeeecceeeeeC---cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcc-------c
Q 038045 34 EIVPIQDPLSFEKG---FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYN-------D 102 (621)
Q Consensus 34 ~~~~v~~~lsf~~G---~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~-------~ 102 (621)
+-....++++|.|- .+.+|+|+||+|++|+ +|+++||||+||||++..|..++ |++|.|.+||.+ .
T Consensus 463 ~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe---~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~ 539 (716)
T KOG0058|consen 463 QGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGE---VVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKY 539 (716)
T ss_pred cceEEEEEeeeecCCCCCchhhcCceeeeCCCC---EEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHH
Confidence 33456788999875 5679999999999999 99999999999999999999999 999999999973 2
Q ss_pred ccccccccCCCCcccccchHHHHHHHHhcCCC---c--------------cCc-cccccc----cCccCCceeecCCccE
Q 038045 103 SSRVVDGNFDDPRLTDYDTLLENVRDLREGKP---V--------------QVP-IYDFES----SSRTGYRTVEVPSSRI 160 (621)
Q Consensus 103 ~~R~Ig~vfQdp~l~d~~tV~enL~~L~~gk~---V--------------~~p-~yd~~~----~~rsggq~qrVa~ArV 160 (621)
.++++|+|-|+|-+|. -++.|||.+...... + ..| .|+-.. .++||||+||+++||+
T Consensus 540 lr~~Ig~V~QEPvLFs-~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARA 618 (716)
T KOG0058|consen 540 LRRKIGLVGQEPVLFS-GSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARA 618 (716)
T ss_pred HHHHeeeeeccceeec-ccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHH
Confidence 3578999999999885 689999987543210 0 112 244333 3679999999999999
Q ss_pred EEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccC
Q 038045 161 VIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQ 240 (621)
Q Consensus 161 LIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~ 240 (621)
++-+|.++++||.++.||. +...+.+.-...+ -.++|++.|.|++..+ +-+|.++++++|.+.+.++
T Consensus 619 Llr~P~VLILDEATSALDa-------eSE~lVq~aL~~~-~~~rTVlvIAHRLSTV-----~~Ad~Ivvi~~G~V~E~G~ 685 (716)
T KOG0058|consen 619 LLRNPRVLILDEATSALDA-------ESEYLVQEALDRL-MQGRTVLVIAHRLSTV-----RHADQIVVIDKGRVVEMGT 685 (716)
T ss_pred HhcCCCEEEEechhhhcch-------hhHHHHHHHHHHh-hcCCeEEEEehhhhHh-----hhccEEEEEcCCeEEeccc
Confidence 9999999999999999995 2334555544333 2369999999999877 4567889999999999999
Q ss_pred ceeEEecCCCC
Q 038045 241 TYDIYLLPPGE 251 (621)
Q Consensus 241 ~aDIYi~P~~~ 251 (621)
+.+++-.|.+.
T Consensus 686 h~eLl~~~~gl 696 (716)
T KOG0058|consen 686 HDELLSKPNGL 696 (716)
T ss_pred HHHHhhCcccH
Confidence 99886555444
No 269
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.82 E-value=8.2e-21 Score=217.48 Aligned_cols=190 Identities=16% Similarity=0.203 Sum_probs=150.1
Q ss_pred eeeecceeeeeC--cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-------ccc
Q 038045 36 VPIQDPLSFEKG--FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-------SSR 105 (621)
Q Consensus 36 ~~v~~~lsf~~G--~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-------~~R 105 (621)
....++++|.|+ ...+|+++||++++|+ .++|+|+||||||||++.|+|++ |..|.|.+||... .++
T Consensus 451 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge---~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~ 527 (686)
T TIGR03797 451 AIEVDRVTFRYRPDGPLILDDVSLQIEPGE---FVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRR 527 (686)
T ss_pred eEEEEEEEEEcCCCCccceeeeEEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHh
Confidence 356788999884 4579999999999999 89999999999999999999999 9999999999732 245
Q ss_pred cccccCCCCcccccchHHHHHHHHhcC---------CCc-------cCc-ccccc----ccCccCCceeecCCccEEEEe
Q 038045 106 VVDGNFDDPRLTDYDTLLENVRDLREG---------KPV-------QVP-IYDFE----SSSRTGYRTVEVPSSRIVIIE 164 (621)
Q Consensus 106 ~Ig~vfQdp~l~d~~tV~enL~~L~~g---------k~V-------~~p-~yd~~----~~~rsggq~qrVa~ArVLIvE 164 (621)
.+++++|++.+|+ .|+++||...... +.. ..| .|+.. -..+||||+|+++.||+++-+
T Consensus 528 ~i~~v~Q~~~lf~-gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~ 606 (686)
T TIGR03797 528 QLGVVLQNGRLMS-GSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRK 606 (686)
T ss_pred ccEEEccCCccCc-ccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcC
Confidence 7999999999885 5999999753210 000 111 12221 245799999999999999999
Q ss_pred cceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 165 GIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 165 G~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
|.++++|||++.+|.. ..+++.+.+.+.+.|++.|+|+.+... .+|++.++++|.+...+++.++
T Consensus 607 p~iLiLDEpTS~LD~~----------te~~i~~~L~~~~~T~IiItHr~~~i~-----~~D~Iivl~~G~iv~~G~~~~L 671 (686)
T TIGR03797 607 PRILLFDEATSALDNR----------TQAIVSESLERLKVTRIVIAHRLSTIR-----NADRIYVLDAGRVVQQGTYDEL 671 (686)
T ss_pred CCEEEEeCCccCCCHH----------HHHHHHHHHHHhCCeEEEEecChHHHH-----cCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999972 233344444445789999999987653 4688888999999888887775
No 270
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.82 E-value=5.8e-21 Score=188.76 Aligned_cols=182 Identities=13% Similarity=0.136 Sum_probs=137.2
Q ss_pred ecceeeeeC--cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-------cccccc
Q 038045 39 QDPLSFEKG--FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-------SSRVVD 108 (621)
Q Consensus 39 ~~~lsf~~G--~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-------~~R~Ig 108 (621)
.+++++.++ .+.+++++||++++|+ +++|+||||||||||+++|+|+. |..|.|.++|... ..+.++
T Consensus 5 ~~~l~~~~~~~~~~~l~~i~~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (221)
T cd03244 5 FKNVSLRYRPNLPPVLKNISFSIKPGE---KVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRIS 81 (221)
T ss_pred EEEEEEecCCCCcccccceEEEECCCC---EEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEE
Confidence 456777664 3579999999999999 99999999999999999999998 8999999998632 235689
Q ss_pred ccCCCCcccccchHHHHHHHHhcCC---------CccCcc------------ccccccCccCCceeecCCccEEEEecce
Q 038045 109 GNFDDPRLTDYDTLLENVRDLREGK---------PVQVPI------------YDFESSSRTGYRTVEVPSSRIVIIEGIY 167 (621)
Q Consensus 109 ~vfQdp~l~d~~tV~enL~~L~~gk---------~V~~p~------------yd~~~~~rsggq~qrVa~ArVLIvEG~l 167 (621)
|+||++.+++ .++.+|+....... ...+.. .+.....+|+|+++++..+++++.+|.+
T Consensus 82 ~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 82 IIPQDPVLFS-GTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred EECCCCcccc-chHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999998776 58999886421100 000000 1234567899999999999999999999
Q ss_pred eccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceee
Q 038045 168 ALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTET 237 (621)
Q Consensus 168 LLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~ 237 (621)
+++|||+..||+. ..+.+.++.+.+. .+.|++.++|+.+... . +|++.++.+|.+..
T Consensus 161 lllDEP~~~LD~~-------~~~~l~~~l~~~~-~~~tii~~sh~~~~~~----~-~d~i~~l~~g~~~~ 217 (221)
T cd03244 161 LVLDEATASVDPE-------TDALIQKTIREAF-KDCTVLTIAHRLDTII----D-SDRILVLDKGRVVE 217 (221)
T ss_pred EEEeCccccCCHH-------HHHHHHHHHHHhc-CCCEEEEEeCCHHHHh----h-CCEEEEEECCeEEe
Confidence 9999999999973 2334444444443 3689999999988764 3 56666777766544
No 271
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.82 E-value=1.1e-20 Score=208.93 Aligned_cols=186 Identities=10% Similarity=0.059 Sum_probs=146.3
Q ss_pred eeecceeeee---CcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-C-CeeEEEECCcccc--------
Q 038045 37 PIQDPLSFEK---GFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-P-SIAVISMDNYNDS-------- 103 (621)
Q Consensus 37 ~v~~~lsf~~---G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P-~sGvI~lDg~~~~-------- 103 (621)
...+++++.+ +...+++++||++.+|+ ++||+||||||||||+++|+|++ | ..|.|.++|....
T Consensus 258 l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge---~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~ 334 (500)
T TIGR02633 258 LEARNLTCWDVINPHRKRVDDVSFSLRRGE---ILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAI 334 (500)
T ss_pred EEEeCCcccccccccccccccceeEEeCCc---EEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHH
Confidence 4466777766 34579999999999999 99999999999999999999998 5 7999999985321
Q ss_pred cccccccCCCC---cccccchHHHHHHHHh----cC----C-------------CccCc--cccccccCccCCceeecCC
Q 038045 104 SRVVDGNFDDP---RLTDYDTLLENVRDLR----EG----K-------------PVQVP--IYDFESSSRTGYRTVEVPS 157 (621)
Q Consensus 104 ~R~Ig~vfQdp---~l~d~~tV~enL~~L~----~g----k-------------~V~~p--~yd~~~~~rsggq~qrVa~ 157 (621)
++.++|+||++ .+++.+++.+|+.... .. . .+.+. ..+.....+|+|++|++..
T Consensus 335 ~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~l 414 (500)
T TIGR02633 335 RAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVL 414 (500)
T ss_pred hCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHH
Confidence 24689999996 4788889999886521 00 0 01121 1244457889999999999
Q ss_pred ccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCcee
Q 038045 158 SRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTE 236 (621)
Q Consensus 158 ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie 236 (621)
+++++.+|.++++|||++.||+. ..+.+..+.+.+.+.|.|++.++|++..+. ..+|++.++.+|.+.
T Consensus 415 a~al~~~p~lllLDEPt~~LD~~-------~~~~l~~~l~~l~~~g~tviivsHd~~~~~----~~~d~v~~l~~G~i~ 482 (500)
T TIGR02633 415 AKMLLTNPRVLILDEPTRGVDVG-------AKYEIYKLINQLAQEGVAIIVVSSELAEVL----GLSDRVLVIGEGKLK 482 (500)
T ss_pred HHHHhhCCCEEEEcCCCCCcCHh-------HHHHHHHHHHHHHhCCCEEEEECCCHHHHH----HhCCEEEEEECCEEE
Confidence 99999999999999999999973 234555566666677999999999999887 677777788777654
No 272
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.82 E-value=6.9e-20 Score=188.47 Aligned_cols=167 Identities=20% Similarity=0.237 Sum_probs=140.4
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCC----CeeEEEECCcccccc-----------cccccCCC--CcccccchHHHHHHHH
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFMP----SIAVISMDNYNDSSR-----------VVDGNFDD--PRLTDYDTLLENVRDL 129 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLlP----~sGvI~lDg~~~~~R-----------~Ig~vfQd--p~l~d~~tV~enL~~L 129 (621)
+|||+|+|||||||+++.|...+. ....|..|+|+...+ ..+.+|++ |+++++..+.+.+..+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~~L 80 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFRTY 80 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHHHH
Confidence 589999999999999999998762 467899999976432 14578999 9999999999999999
Q ss_pred hcCCCccCcccccc----------ccCccCCceeecCCccEEEEecceecc----ccccCCCCeeEEecCCchHHHHHHH
Q 038045 130 REGKPVQVPIYDFE----------SSSRTGYRTVEVPSSRIVIIEGIYALS----EKLRPLLDLRVSVTGGVHFDLVKRV 195 (621)
Q Consensus 130 ~~gk~V~~p~yd~~----------~~~rsggq~qrVa~ArVLIvEG~lLLl----DEp~s~LDlkV~Vd~~~d~~LirRI 195 (621)
++++.+..|.|++. ++.+..+ ...+.+++++|+||.+.+. .+++..+|+++||+++.+.+++||+
T Consensus 81 ~~g~~i~~p~Y~h~~~~~~~~~~~~gtft~~-~~~~~p~dvIivEGLhg~~~~~~~~lr~~~DlkIfVd~~~dlr~irRI 159 (277)
T cd02029 81 GETGRGRSRYYLHSDEEAAPFNQEPGTFTPW-EDLPEDTDLLFYEGLHGGVVTEGYNVAQHADLLVGVVPIINLEWIQKI 159 (277)
T ss_pred HcCCCcccceeeccccccccccCCCCccCCc-ccccCCCcEEEECCCCcccccccHHHHHhCCeEEEecCcHHHHHHHHH
Confidence 99999999999873 2333222 2235789999999987433 4799999999999999999999999
Q ss_pred HHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEE
Q 038045 196 LRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIY 245 (621)
Q Consensus 196 ~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIY 245 (621)
.||..++|++.+.|.++|...+ ..+..||+|+...+||.
T Consensus 160 ~RD~~ERGrs~EsVi~qilrrm-----------pdy~~yI~PQ~~~tDI~ 198 (277)
T cd02029 160 HRDTAERGYSAEAVMDTILRRM-----------PDYINYICPQFSRTDIN 198 (277)
T ss_pred HhhhHhhCCCHHHHHHHHHHhC-----------chHHhhCCcccccCcEE
Confidence 9999999999999999998776 46778999999999994
No 273
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.82 E-value=1e-20 Score=235.02 Aligned_cols=195 Identities=12% Similarity=0.037 Sum_probs=160.6
Q ss_pred eeeecceeeeeCc--EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc------cccc
Q 038045 36 VPIQDPLSFEKGF--FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND------SSRV 106 (621)
Q Consensus 36 ~~v~~~lsf~~G~--~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~------~~R~ 106 (621)
....+++++.++. +.||+++||.+++|+ ++||+||||||||||+++|+|++ |+.|.|.++|+.. .++.
T Consensus 1937 ~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GE---i~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~ 2013 (2272)
T TIGR01257 1937 ILRLNELTKVYSGTSSPAVDRLCVGVRPGE---CFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQN 2013 (2272)
T ss_pred eEEEEEEEEEECCCCceEEEeeEEEEcCCc---EEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhh
Confidence 3567788888875 689999999999999 99999999999999999999999 9999999999743 1346
Q ss_pred ccccCCCCcccccchHHHHHHHHhc--CC---C-----------ccCc-cccccccCccCCceeecCCccEEEEecceec
Q 038045 107 VDGNFDDPRLTDYDTLLENVRDLRE--GK---P-----------VQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYAL 169 (621)
Q Consensus 107 Ig~vfQdp~l~d~~tV~enL~~L~~--gk---~-----------V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLL 169 (621)
+||++|++.+++.+|++|++..... +. . +.+. ..+...+.+|||+++++..+++++.+|.+++
T Consensus 2014 IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLL 2093 (2272)
T TIGR01257 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVL 2093 (2272)
T ss_pred EEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999999999986431 10 0 1111 1345568899999999999999999999999
Q ss_pred cccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 170 SEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 170 lDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
+|||++++|+. ..+.++++.+.+.+.|.|++.++|+++++. ..||++++|.+|.+...++..++
T Consensus 2094 LDEPTsGLDp~-------sr~~l~~lL~~l~~~g~TIILtTH~mee~e----~lcDrV~IL~~G~i~~~Gs~q~L 2157 (2272)
T TIGR01257 2094 LDEPTTGMDPQ-------ARRMLWNTIVSIIREGRAVVLTSHSMEECE----ALCTRLAIMVKGAFQCLGTIQHL 2157 (2272)
T ss_pred EECCCCCCCHH-------HHHHHHHHHHHHHhCCCEEEEEeCCHHHHH----HhCCEEEEEECCEEEEECCHHHH
Confidence 99999999973 345666766666667999999999999998 78899999998877666555443
No 274
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.82 E-value=1.1e-20 Score=187.01 Aligned_cols=178 Identities=15% Similarity=0.100 Sum_probs=133.6
Q ss_pred ecceeeeeC-cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-----------ccc
Q 038045 39 QDPLSFEKG-FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-----------SSR 105 (621)
Q Consensus 39 ~~~lsf~~G-~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-----------~~R 105 (621)
+.++.|.++ ...+++++||++++|+ +++|+||||||||||+++|+|+. |..|.|.++|... .++
T Consensus 3 ~~~~~~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 3 VTNGYFSWGSGLATLSNINIRIPTGQ---LTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeEEecCCCCcceeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 345667765 4679999999999999 99999999999999999999998 8999999998631 124
Q ss_pred cccccCCCCcccccchHHHHHHHHhcCC---------CccC-------c-----cccccccCccCCceeecCCccEEEEe
Q 038045 106 VVDGNFDDPRLTDYDTLLENVRDLREGK---------PVQV-------P-----IYDFESSSRTGYRTVEVPSSRIVIIE 164 (621)
Q Consensus 106 ~Ig~vfQdp~l~d~~tV~enL~~L~~gk---------~V~~-------p-----~yd~~~~~rsggq~qrVa~ArVLIvE 164 (621)
.++|++|++.++ ..++.+|+....... ...+ | ..+......|+|+++++..+++++.+
T Consensus 80 ~i~~~~q~~~~~-~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 158 (218)
T cd03290 80 SVAYAAQKPWLL-NATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQN 158 (218)
T ss_pred eEEEEcCCCccc-cccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhC
Confidence 689999999887 468999987532110 0000 0 01233567899999999999999999
Q ss_pred cceeccccccCCCCeeEEecCCchHHHHHH--HHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCC
Q 038045 165 GIYALSEKLRPLLDLRVSVTGGVHFDLVKR--VLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPE 232 (621)
Q Consensus 165 G~lLLlDEp~s~LDlkV~Vd~~~d~~LirR--I~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~e 232 (621)
|.++++|||+..||.. ..+.+.+ +.+.+.+.|.|++.++|+.+... .+|++.++.+
T Consensus 159 p~illlDEPt~~LD~~-------~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~-----~~d~i~~l~~ 216 (218)
T cd03290 159 TNIVFLDDPFSALDIH-------LSDHLMQEGILKFLQDDKRTLVLVTHKLQYLP-----HADWIIAMKD 216 (218)
T ss_pred CCEEEEeCCccccCHH-------HHHHHHHHHHHHHHhcCCCEEEEEeCChHHHh-----hCCEEEEecC
Confidence 9999999999999962 1223332 55555666899999999987653 2455555543
No 275
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.6e-20 Score=209.27 Aligned_cols=187 Identities=9% Similarity=0.050 Sum_probs=146.1
Q ss_pred eeeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccccccccccCCCC
Q 038045 36 VPIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDSSRVVDGNFDDP 114 (621)
Q Consensus 36 ~~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~~R~Ig~vfQdp 114 (621)
....+++++.|+...+++++||++++|+ ++||+||||||||||+++|+|++ |+.|.|.+++. +.++|++|++
T Consensus 319 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge---~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~----~~i~~~~q~~ 391 (530)
T PRK15064 319 ALEVENLTKGFDNGPLFKNLNLLLEAGE---RLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN----ANIGYYAQDH 391 (530)
T ss_pred eEEEEeeEEeeCCceeecCcEEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc----eEEEEEcccc
Confidence 3457789998888889999999999999 99999999999999999999998 89999999873 4689999987
Q ss_pred c--ccccchHHHHHHHHhcCC-----------CccC--ccccccccCccCCceeecCCccEEEEecceeccccccCCCCe
Q 038045 115 R--LTDYDTLLENVRDLREGK-----------PVQV--PIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDL 179 (621)
Q Consensus 115 ~--l~d~~tV~enL~~L~~gk-----------~V~~--p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDl 179 (621)
. +++..++.+++..+.... .+.+ ...+.....+|+|+++++..+++++.+|.++++|||++.||+
T Consensus 392 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~ 471 (530)
T PRK15064 392 AYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDM 471 (530)
T ss_pred cccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence 4 456688999886532110 1112 123556788999999999999999999999999999999997
Q ss_pred eEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCcee-eccCcee
Q 038045 180 RVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTE-TMEQTYD 243 (621)
Q Consensus 180 kV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie-~~~~~aD 243 (621)
. ....+...+.+.+.|++.++|+.+... ..+|++.++++|.+. ..+.+.+
T Consensus 472 ~----------~~~~l~~~l~~~~~tvi~vsHd~~~~~----~~~d~i~~l~~g~i~~~~g~~~~ 522 (530)
T PRK15064 472 E----------SIESLNMALEKYEGTLIFVSHDREFVS----SLATRIIEITPDGVVDFSGTYEE 522 (530)
T ss_pred H----------HHHHHHHHHHHCCCEEEEEeCCHHHHH----HhCCEEEEEECCeEEEcCCCHHH
Confidence 3 222333333444569999999998887 667777888877664 3344433
No 276
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.82 E-value=7.4e-21 Score=213.25 Aligned_cols=192 Identities=18% Similarity=0.241 Sum_probs=156.5
Q ss_pred eeecceeeeeC-cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcc-------cccccc
Q 038045 37 PIQDPLSFEKG-FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYN-------DSSRVV 107 (621)
Q Consensus 37 ~v~~~lsf~~G-~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~-------~~~R~I 107 (621)
...++++|.|+ ...+++++||++++|+ .+||+|||||||||+++.|.+++ |..|.|.+||.. ..++.+
T Consensus 329 I~f~~vsf~y~~~~~vl~~is~~i~~Ge---~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I 405 (567)
T COG1132 329 IEFENVSFSYPGKKPVLKDISFSIEPGE---KVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRI 405 (567)
T ss_pred EEEEEEEEEcCCCCccccCceEEEcCCC---EEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhc
Confidence 57889999998 6899999999999999 89999999999999999999999 889999999863 234679
Q ss_pred cccCCCCcccccchHHHHHHHHhcC---CC--------------ccCc-ccccccc----CccCCceeecCCccEEEEec
Q 038045 108 DGNFDDPRLTDYDTLLENVRDLREG---KP--------------VQVP-IYDFESS----SRTGYRTVEVPSSRIVIIEG 165 (621)
Q Consensus 108 g~vfQdp~l~d~~tV~enL~~L~~g---k~--------------V~~p-~yd~~~~----~rsggq~qrVa~ArVLIvEG 165 (621)
++++|++.+|+ .|+.+||.+.... +. ...| .||...+ .+||||+|+++.||+++-++
T Consensus 406 ~~V~Qd~~LF~-~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~ 484 (567)
T COG1132 406 GIVSQDPLLFS-GTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNP 484 (567)
T ss_pred cEEcccceeec-ccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence 99999999998 8999999876532 00 1223 3554443 57899999999999999999
Q ss_pred ceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEE
Q 038045 166 IYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIY 245 (621)
Q Consensus 166 ~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIY 245 (621)
.++++||+++.+|.. ....+.+..+.+. +++|...|.|+..... -+|.+.++++|.+...+++.+++
T Consensus 485 ~ILILDEaTSalD~~-------tE~~I~~~l~~l~-~~rT~iiIaHRlsti~-----~aD~IiVl~~G~i~e~G~h~eLl 551 (567)
T COG1132 485 PILILDEATSALDTE-------TEALIQDALKKLL-KGRTTLIIAHRLSTIK-----NADRIIVLDNGRIVERGTHEELL 551 (567)
T ss_pred CEEEEeccccccCHH-------hHHHHHHHHHHHh-cCCEEEEEeccHhHHH-----hCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999973 2334444333333 5678888999997664 37888899999999988888874
No 277
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=99.81 E-value=4.9e-20 Score=178.95 Aligned_cols=167 Identities=44% Similarity=0.730 Sum_probs=140.1
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC----CCeeEEEECCcccc---cccccccCCCCcccccchHHHHHHHHhcCCCccCcc
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFM----PSIAVISMDNYNDS---SRVVDGNFDDPRLTDYDTLLENVRDLREGKPVQVPI 139 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLl----P~sGvI~lDg~~~~---~R~Ig~vfQdp~l~d~~tV~enL~~L~~gk~V~~p~ 139 (621)
+|||.|++|||||||++.|+..+ +.+..|++|+|+.. .+.....++++..++...+.++|..++.++.+..|.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~g~~d~~~~~d~~~l~~~l~~l~~~~~~~~p~ 80 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRKTPRDEDGNYDFESILDLDLLNKNLHDLLNGKEVELPI 80 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCcccccccCCCCCCCccccHHHHHHHHHHHHCCCeeeccc
Confidence 58999999999999999999986 36778999999753 223345677777889999999999999999999999
Q ss_pred ccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchH-HHHHHHHHHHHHcCCCceehHhHHHHHhc
Q 038045 140 YDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHF-DLVKRVLRDIQRVGQEPEEIIQQISETSA 218 (621)
Q Consensus 140 yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~-~LirRI~Rdl~erG~Ti~~VtHd~eea~~ 218 (621)
||+..+.+.+.....+....++|+||.+++.+++.+.+|+++|++++.+. ++.||+.||..++|.+.+.+.+++. ..
T Consensus 81 yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~~~l~~~~d~~I~vd~~~~~~rl~rri~RD~~~rg~~~~~~i~~~~-~~- 158 (179)
T cd02028 81 YDFRTGKRRGYRKLKLPPSGVVILEGIYALNERLRSLLDIRVAVSGGVHLNRLLRRVVRDIQFRGYSAELTILMWP-SV- 158 (179)
T ss_pred ceeECCccCCCceEEeCCCCEEEEecHHhcCHhHHhhcCEEEEEeCCccHHHHHHHHHHhHHhhCCCHHHHhhhcc-cc-
Confidence 99998887765456788899999999999999999999999999999998 9999999999999999999998843 21
Q ss_pred cccccchhhhcCCCC-ceeeccCceeEE
Q 038045 219 KNLSVDQIKAVYPEG-HTETMEQTYDIY 245 (621)
Q Consensus 219 R~v~~~d~iavl~eg-~Ie~~~~~aDIY 245 (621)
.+.+. ++.|.+..||++
T Consensus 159 ----------~~~~~~~~~~~~~~ad~~ 176 (179)
T cd02028 159 ----------PSGEEFIIPPLQEAAIVM 176 (179)
T ss_pred ----------cCchhhcCCCchhcccee
Confidence 23333 345677788874
No 278
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.81 E-value=1.1e-20 Score=212.38 Aligned_cols=191 Identities=17% Similarity=0.164 Sum_probs=148.2
Q ss_pred eeecceeeee-CcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccc-------cccccc
Q 038045 37 PIQDPLSFEK-GFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNYND-------SSRVVD 108 (621)
Q Consensus 37 ~v~~~lsf~~-G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~~~-------~~R~Ig 108 (621)
...++++|.+ +...+|+++||++++|+ .++|+||||||||||++.|.|++|..|.|.+||... .++.++
T Consensus 350 i~~~~vsf~~~~~~~vL~~i~l~i~~G~---~vaIvG~SGsGKSTL~~lL~g~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 426 (588)
T PRK11174 350 IEAEDLEILSPDGKTLAGPLNFTLPAGQ---RIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWRKHLS 426 (588)
T ss_pred EEEEeeEEeccCCCeeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCcEEEECCEecccCCHHHHHhheE
Confidence 4567888643 45679999999999999 999999999999999999999999899999999632 245799
Q ss_pred ccCCCCcccccchHHHHHHHHhcCC---C-------------c-cCc-ccccc----ccCccCCceeecCCccEEEEecc
Q 038045 109 GNFDDPRLTDYDTLLENVRDLREGK---P-------------V-QVP-IYDFE----SSSRTGYRTVEVPSSRIVIIEGI 166 (621)
Q Consensus 109 ~vfQdp~l~d~~tV~enL~~L~~gk---~-------------V-~~p-~yd~~----~~~rsggq~qrVa~ArVLIvEG~ 166 (621)
|++|+|.+|+ .|+++||.+..... . + ..| .|+.. -..+||||+||++.||+++-+|.
T Consensus 427 ~v~Q~~~LF~-~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~ 505 (588)
T PRK11174 427 WVGQNPQLPH-GTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQ 505 (588)
T ss_pred EecCCCcCCC-cCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 9999999986 59999998753210 0 0 011 23322 24589999999999999999999
Q ss_pred eeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 167 YALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 167 lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
++++|||++.||.. ..+.+.+..+.+ ..++|++.|+|+.... ..+|.+.++++|.+...+++.++
T Consensus 506 IliLDE~TSaLD~~-------te~~i~~~l~~~-~~~~TvIiItHrl~~i-----~~aD~Iivl~~G~i~e~G~~~eL 570 (588)
T PRK11174 506 LLLLDEPTASLDAH-------SEQLVMQALNAA-SRRQTTLMVTHQLEDL-----AQWDQIWVMQDGQIVQQGDYAEL 570 (588)
T ss_pred EEEEeCCccCCCHH-------HHHHHHHHHHHH-hCCCEEEEEecChHHH-----HhCCEEEEEeCCeEeecCCHHHH
Confidence 99999999999972 122333333332 2589999999998655 34677888999998888887776
No 279
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.81 E-value=1.9e-20 Score=185.84 Aligned_cols=193 Identities=15% Similarity=0.202 Sum_probs=156.5
Q ss_pred ecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc-------ccccccc
Q 038045 39 QDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS-------SRVVDGN 110 (621)
Q Consensus 39 ~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~-------~R~Ig~v 110 (621)
.++++++...+.++++++|++.+|| +++|+||||||||||++.|.|.+ |+.|.+.++|.... .+..+..
T Consensus 4 a~nls~~~~Gr~ll~~vsl~~~pGe---v~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVl 80 (259)
T COG4559 4 AENLSYSLAGRRLLDGVSLDLRPGE---VLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVL 80 (259)
T ss_pred eeeeEEEeecceeccCcceeccCCc---EEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhc
Confidence 5689999999999999999999999 99999999999999999999999 99999999987421 2456778
Q ss_pred CCCCcccccchHHHHHHHHhcCC----C--------------ccCcccc-ccccCccCCceeecCCccEE------EEec
Q 038045 111 FDDPRLTDYDTLLENVRDLREGK----P--------------VQVPIYD-FESSSRTGYRTVEVPSSRIV------IIEG 165 (621)
Q Consensus 111 fQdp~l~d~~tV~enL~~L~~gk----~--------------V~~p~yd-~~~~~rsggq~qrVa~ArVL------IvEG 165 (621)
+|+..+-...++.|.+...+... . +....|. .....+|||++|||..+|++ +-+|
T Consensus 81 pQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~ 160 (259)
T COG4559 81 PQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSG 160 (259)
T ss_pred ccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCC
Confidence 88877544457888888744211 1 0111111 11346799999999988876 3456
Q ss_pred ceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEE
Q 038045 166 IYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIY 245 (621)
Q Consensus 166 ~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIY 245 (621)
.++|+|||++.||+ .+....-++.|++.+.|..+..|.||+.-++ .++|++..|.+|.+...+.+.|++
T Consensus 161 r~L~LDEPtsaLDi-------~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA----~YaDrivll~~Grv~a~g~p~~vl 229 (259)
T COG4559 161 RWLFLDEPTSALDI-------AHQHHTLRLARQLAREGGAVLAVLHDLNLAA----QYADRIVLLHQGRVIASGSPQDVL 229 (259)
T ss_pred ceEEecCCccccch-------HHHHHHHHHHHHHHhcCCcEEEEEccchHHH----HhhheeeeeeCCeEeecCCHHHhc
Confidence 69999999999998 3556677888888899999999999999998 889999999999999999999984
No 280
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.81 E-value=3.7e-20 Score=180.62 Aligned_cols=167 Identities=17% Similarity=0.081 Sum_probs=131.2
Q ss_pred ecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc---cccccccCCCC
Q 038045 39 QDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS---SRVVDGNFDDP 114 (621)
Q Consensus 39 ~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~---~R~Ig~vfQdp 114 (621)
.+++++.++...+++ +||++++|+ ++||+|+||||||||+++|+|+. |..|.|.++|.... .+.++|++|++
T Consensus 4 ~~~l~~~~~~~~l~~-vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (195)
T PRK13541 4 LHQLQFNIEQKNLFD-LSITFLPSA---ITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNL 79 (195)
T ss_pred EEEeeEEECCcEEEE-EEEEEcCCc---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCc
Confidence 466777777666666 999999999 99999999999999999999998 89999999996421 23578999988
Q ss_pred cccccchHHHHHHHHhcCC-----------CccC-ccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEE
Q 038045 115 RLTDYDTLLENVRDLREGK-----------PVQV-PIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVS 182 (621)
Q Consensus 115 ~l~d~~tV~enL~~L~~gk-----------~V~~-p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~ 182 (621)
..++..++.+|+.+..... ...+ ...+......|+|+++++..+++++.+|.++++|||++.+|+.
T Consensus 80 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~-- 157 (195)
T PRK13541 80 GLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKE-- 157 (195)
T ss_pred CCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH--
Confidence 8888899999997643110 0111 1233445778999999999999999999999999999999973
Q ss_pred ecCCchHHHHHHHHHHHHHcCCCceehHhHHHHH
Q 038045 183 VTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISET 216 (621)
Q Consensus 183 Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea 216 (621)
..+.+..+.+...+.|.|++.++|+....
T Consensus 158 -----~~~~l~~~l~~~~~~~~tiii~sh~~~~i 186 (195)
T PRK13541 158 -----NRDLLNNLIVMKANSGGIVLLSSHLESSI 186 (195)
T ss_pred -----HHHHHHHHHHHHHhCCCEEEEEeCCcccc
Confidence 23455555555556789999999997644
No 281
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=4.4e-20 Score=192.91 Aligned_cols=192 Identities=13% Similarity=0.160 Sum_probs=147.8
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC------CCeeEEEECCcccc-------
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM------PSIAVISMDNYNDS------- 103 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl------P~sGvI~lDg~~~~------- 103 (621)
...+++++.++...+|+++||++.+|+ ++||+|+||||||||+++|+|++ |..|.|.++|....
T Consensus 46 l~i~nl~~~~~~~~iL~~is~~i~~Ge---~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~ 122 (305)
T PRK14264 46 LSVEDLDVYYGDDHALKGVSMDIPEKS---VTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLV 122 (305)
T ss_pred EEEEEEEEEeCCeeeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHH
Confidence 456789998888899999999999999 99999999999999999999997 37999999986321
Q ss_pred --cccccccCCCCcccccchHHHHHHHHhcC--------------C---C------------ccC-----ccccccccCc
Q 038045 104 --SRVVDGNFDDPRLTDYDTLLENVRDLREG--------------K---P------------VQV-----PIYDFESSSR 147 (621)
Q Consensus 104 --~R~Ig~vfQdp~l~d~~tV~enL~~L~~g--------------k---~------------V~~-----p~yd~~~~~r 147 (621)
++.++|+||++.+++ .++.+|+.+.... . . +.+ ...+.....+
T Consensus 123 ~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L 201 (305)
T PRK14264 123 ELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGL 201 (305)
T ss_pred HHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccC
Confidence 246899999998887 4999999753210 0 0 000 1123445678
Q ss_pred cCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhh
Q 038045 148 TGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIK 227 (621)
Q Consensus 148 sggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~i 227 (621)
|+|+++++.++++++.+|.++++|||++.||+. ....+.++++.+.+ +.|++.++|++.... .++|++
T Consensus 202 SgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~-------~~~~l~~~L~~~~~-~~tiiivtH~~~~i~----~~~d~i 269 (305)
T PRK14264 202 SGGQQQRLCIARCLAVDPEVILMDEPASALDPI-------ATSKIEDLIEELAE-EYTVVVVTHNMQQAA----RISDQT 269 (305)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH-------HHHHHHHHHHHHhc-CCEEEEEEcCHHHHH----HhcCEE
Confidence 999999999999999999999999999999973 23445555555544 479999999998876 666764
Q ss_pred -hcCCCCceeeccCceeE
Q 038045 228 -AVYPEGHTETMEQTYDI 244 (621)
Q Consensus 228 -avl~eg~Ie~~~~~aDI 244 (621)
.+++.|.+...+...++
T Consensus 270 ~~~l~~G~i~~~g~~~~~ 287 (305)
T PRK14264 270 AVFLTGGELVEYDDTDKI 287 (305)
T ss_pred EEEecCCEEEEeCCHHHH
Confidence 45677877665555444
No 282
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.81 E-value=1.2e-20 Score=216.74 Aligned_cols=190 Identities=16% Similarity=0.224 Sum_probs=149.2
Q ss_pred eeecceeeeeC-cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcc-------cccccc
Q 038045 37 PIQDPLSFEKG-FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYN-------DSSRVV 107 (621)
Q Consensus 37 ~v~~~lsf~~G-~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~-------~~~R~I 107 (621)
...++++|.|+ ...+|+++||++++|+ .++|+|+||||||||++.|+|++ |+.|.|.+||.. ..++.+
T Consensus 474 I~~~~vsf~y~~~~~iL~~isl~i~~G~---~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 550 (708)
T TIGR01193 474 IVINDVSYSYGYGSNILSDISLTIKMNS---KTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFI 550 (708)
T ss_pred EEEEEEEEEcCCCCcceeceeEEECCCC---EEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHhe
Confidence 45678999886 4679999999999999 89999999999999999999999 999999999973 224579
Q ss_pred cccCCCCcccccchHHHHHHHHh-cCC---C-------c-------cCc-ccccc----ccCccCCceeecCCccEEEEe
Q 038045 108 DGNFDDPRLTDYDTLLENVRDLR-EGK---P-------V-------QVP-IYDFE----SSSRTGYRTVEVPSSRIVIIE 164 (621)
Q Consensus 108 g~vfQdp~l~d~~tV~enL~~L~-~gk---~-------V-------~~p-~yd~~----~~~rsggq~qrVa~ArVLIvE 164 (621)
+|++|++.+|+. |+++||.... ... . . ..| .|+.. -..+||||+|+++.+|+++-+
T Consensus 551 ~~v~Q~~~lf~g-TI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~ 629 (708)
T TIGR01193 551 NYLPQEPYIFSG-SILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTD 629 (708)
T ss_pred EEEecCceehhH-HHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhC
Confidence 999999998864 9999998642 110 0 0 111 13322 245799999999999999999
Q ss_pred cceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 165 GIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 165 G~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
|.++++|||++.+|.. .+..+.+.+. .. .|+|++.|+|+.... ..+|++.++++|.+...+++.++
T Consensus 630 p~iliLDE~Ts~LD~~------te~~i~~~L~-~~--~~~T~IiitHr~~~~-----~~~D~i~~l~~G~i~~~G~~~~L 695 (708)
T TIGR01193 630 SKVLILDESTSNLDTI------TEKKIVNNLL-NL--QDKTIIFVAHRLSVA-----KQSDKIIVLDHGKIIEQGSHDEL 695 (708)
T ss_pred CCEEEEeCccccCCHH------HHHHHHHHHH-Hh--cCCEEEEEecchHHH-----HcCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999962 2223333333 22 478999999998754 45788888999998888777766
No 283
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.80 E-value=1.7e-20 Score=216.19 Aligned_cols=189 Identities=18% Similarity=0.209 Sum_probs=148.8
Q ss_pred eeecceeeeeCc---EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-------ccc
Q 038045 37 PIQDPLSFEKGF---FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-------SSR 105 (621)
Q Consensus 37 ~v~~~lsf~~G~---~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-------~~R 105 (621)
...++++|.|.. ..+|+++||++++|+ .++|+||||||||||++.|.|++ |..|.|.+||... .++
T Consensus 479 I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge---~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~ 555 (711)
T TIGR00958 479 IEFQDVSFSYPNRPDVPVLKGLTFTLHPGE---VVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHR 555 (711)
T ss_pred EEEEEEEEECCCCCCCccccCceEEEcCCC---EEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHh
Confidence 467789998753 579999999999999 99999999999999999999999 9999999999632 245
Q ss_pred cccccCCCCcccccchHHHHHHHHhcCC---C-------c-------cCc-ccccc----ccCccCCceeecCCccEEEE
Q 038045 106 VVDGNFDDPRLTDYDTLLENVRDLREGK---P-------V-------QVP-IYDFE----SSSRTGYRTVEVPSSRIVII 163 (621)
Q Consensus 106 ~Ig~vfQdp~l~d~~tV~enL~~L~~gk---~-------V-------~~p-~yd~~----~~~rsggq~qrVa~ArVLIv 163 (621)
.++|++|+|.+|+ .|+++||....... . . ..| .++.. -..+||||+||++.+|+++-
T Consensus 556 ~i~~v~Q~~~lF~-gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~ 634 (711)
T TIGR00958 556 QVALVGQEPVLFS-GSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVR 634 (711)
T ss_pred hceEEecCccccc-cCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhc
Confidence 7999999999886 69999998643210 0 0 011 13322 24689999999999999999
Q ss_pred ecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCcee
Q 038045 164 EGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYD 243 (621)
Q Consensus 164 EG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aD 243 (621)
+|.++++|||++.+|.. ...++.+.....++|++.|+|+.... ..+|++.++++|.+...+++.+
T Consensus 635 ~p~ILILDEpTSaLD~~----------te~~i~~~~~~~~~TvIiItHrl~~i-----~~aD~IivL~~G~ive~Gt~~e 699 (711)
T TIGR00958 635 KPRVLILDEATSALDAE----------CEQLLQESRSRASRTVLLIAHRLSTV-----ERADQILVLKKGSVVEMGTHKQ 699 (711)
T ss_pred CCCEEEEEccccccCHH----------HHHHHHHhhccCCCeEEEEeccHHHH-----HhCCEEEEEECCEEEEeeCHHH
Confidence 99999999999999972 22233332234589999999998765 3467788899999988888777
Q ss_pred E
Q 038045 244 I 244 (621)
Q Consensus 244 I 244 (621)
+
T Consensus 700 L 700 (711)
T TIGR00958 700 L 700 (711)
T ss_pred H
Confidence 6
No 284
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.80 E-value=4.5e-20 Score=204.39 Aligned_cols=178 Identities=13% Similarity=0.137 Sum_probs=141.7
Q ss_pred EEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc--------ccccccccCCCC---ccc
Q 038045 50 VVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND--------SSRVVDGNFDDP---RLT 117 (621)
Q Consensus 50 ~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~--------~~R~Ig~vfQdp---~l~ 117 (621)
.+++++||.+.+|+ ++||+||||||||||+++|+|++ |+.|.|.++|... .++.++|++|++ .++
T Consensus 266 ~~l~~vsl~i~~Ge---~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~ 342 (501)
T PRK10762 266 PGVNDVSFTLRKGE---ILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLV 342 (501)
T ss_pred CCcccceEEEcCCc---EEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCc
Confidence 47999999999999 99999999999999999999999 8999999998532 124689999997 477
Q ss_pred ccchHHHHHHHHh-----c--C---------------CCccC--ccccccccCccCCceeecCCccEEEEecceeccccc
Q 038045 118 DYDTLLENVRDLR-----E--G---------------KPVQV--PIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKL 173 (621)
Q Consensus 118 d~~tV~enL~~L~-----~--g---------------k~V~~--p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp 173 (621)
+.+++.+|+.+.. . + ..+.+ ...+.....+|+|++|++..+++++.+|.++++|||
T Consensus 343 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEP 422 (501)
T PRK10762 343 LGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEP 422 (501)
T ss_pred CCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCC
Confidence 8889999986421 0 0 00122 123455678999999999999999999999999999
Q ss_pred cCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCc
Q 038045 174 RPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQT 241 (621)
Q Consensus 174 ~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~ 241 (621)
++.||+. ..+.+.++.+.+.+.|.|++.++|+++.+. .++|++.++.+|.+...+..
T Consensus 423 t~~LD~~-------~~~~l~~~l~~~~~~g~tviivtHd~~~~~----~~~d~v~~l~~G~i~~~~~~ 479 (501)
T PRK10762 423 TRGVDVG-------AKKEIYQLINQFKAEGLSIILVSSEMPEVL----GMSDRILVMHEGRISGEFTR 479 (501)
T ss_pred CCCCCHh-------HHHHHHHHHHHHHHCCCEEEEEcCCHHHHH----hhCCEEEEEECCEEEEEecc
Confidence 9999973 344555666666667999999999999887 67888888888876544333
No 285
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.80 E-value=1.3e-20 Score=212.12 Aligned_cols=192 Identities=15% Similarity=0.143 Sum_probs=149.1
Q ss_pred eeecceeeeeCc-EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-------ccccc
Q 038045 37 PIQDPLSFEKGF-FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-------SSRVV 107 (621)
Q Consensus 37 ~v~~~lsf~~G~-~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-------~~R~I 107 (621)
...++++|.|+. ..+|+++||++++|+ .+||+|+||||||||++.|+|++ |..|.|.+||... .++.+
T Consensus 341 i~~~~v~f~y~~~~~il~~i~l~i~~Ge---~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i 417 (592)
T PRK10790 341 IDIDNVSFAYRDDNLVLQNINLSVPSRG---FVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGV 417 (592)
T ss_pred EEEEEEEEEeCCCCceeeceeEEEcCCC---EEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhhe
Confidence 456788888743 569999999999999 99999999999999999999999 9999999999732 24679
Q ss_pred cccCCCCcccccchHHHHHHHHhcCC---------C------c-cCc-cccc----cccCccCCceeecCCccEEEEecc
Q 038045 108 DGNFDDPRLTDYDTLLENVRDLREGK---------P------V-QVP-IYDF----ESSSRTGYRTVEVPSSRIVIIEGI 166 (621)
Q Consensus 108 g~vfQdp~l~d~~tV~enL~~L~~gk---------~------V-~~p-~yd~----~~~~rsggq~qrVa~ArVLIvEG~ 166 (621)
+|++|+|.+|+. |+++||....... . + ..| .+|- .....||||+||++.+|+++-++.
T Consensus 418 ~~v~Q~~~lF~~-Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~ 496 (592)
T PRK10790 418 AMVQQDPVVLAD-TFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQ 496 (592)
T ss_pred EEEccCCccccc-hHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 999999999985 9999997643110 0 0 011 1222 234688999999999999999999
Q ss_pred eeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEE
Q 038045 167 YALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIY 245 (621)
Q Consensus 167 lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIY 245 (621)
++++|||++.+|.. . .+.+.+..+.+. .++|++.|+|+..... .+|.+.++++|.+...+++.+++
T Consensus 497 illlDEpts~LD~~------t-~~~i~~~l~~~~-~~~tvIivtHr~~~l~-----~~D~ii~l~~G~i~~~G~~~~L~ 562 (592)
T PRK10790 497 ILILDEATANIDSG------T-EQAIQQALAAVR-EHTTLVVIAHRLSTIV-----EADTILVLHRGQAVEQGTHQQLL 562 (592)
T ss_pred EEEEeCCcccCCHH------H-HHHHHHHHHHHh-CCCEEEEEecchHHHH-----hCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999972 1 222333333332 4789999999986653 46777889999999888888774
No 286
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.80 E-value=2.5e-20 Score=189.58 Aligned_cols=191 Identities=11% Similarity=0.129 Sum_probs=144.0
Q ss_pred eeecceeeeeCc--EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-------cccc
Q 038045 37 PIQDPLSFEKGF--FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-------SSRV 106 (621)
Q Consensus 37 ~v~~~lsf~~G~--~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-------~~R~ 106 (621)
...+++++.++. ..+++++||++++|+ ++||+|+||||||||+++|+|++ |..|.|.++|... ..+.
T Consensus 20 i~~~~l~~~~~~~~~~il~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~ 96 (257)
T cd03288 20 IKIHDLCVRYENNLKPVLKHVKAYIKPGQ---KVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSR 96 (257)
T ss_pred EEEEEEEEEeCCCCCcceeEEEEEEcCCC---EEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhh
Confidence 346677777765 579999999999999 99999999999999999999998 8999999998632 1346
Q ss_pred ccccCCCCcccccchHHHHHHHHhcCC-----------Ccc-----Cc-----cccccccCccCCceeecCCccEEEEec
Q 038045 107 VDGNFDDPRLTDYDTLLENVRDLREGK-----------PVQ-----VP-----IYDFESSSRTGYRTVEVPSSRIVIIEG 165 (621)
Q Consensus 107 Ig~vfQdp~l~d~~tV~enL~~L~~gk-----------~V~-----~p-----~yd~~~~~rsggq~qrVa~ArVLIvEG 165 (621)
++|++|++.+++ .++.+|+....... .+. .| ..+.....+|+|+++++..+++++.+|
T Consensus 97 i~~v~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 175 (257)
T cd03288 97 LSIILQDPILFS-GSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS 175 (257)
T ss_pred EEEECCCCcccc-cHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 899999998876 47877764211000 000 00 111223578899999999999999999
Q ss_pred ceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 166 IYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 166 ~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
.++++|||+..+|+. ..+.+.++.+.+. .+.|++.++|+..... . +|++.++++|.+...++..++
T Consensus 176 ~llllDEPt~gLD~~-------~~~~l~~~l~~~~-~~~tiii~sh~~~~~~----~-~dri~~l~~G~i~~~g~~~~~ 241 (257)
T cd03288 176 SILIMDEATASIDMA-------TENILQKVVMTAF-ADRTVVTIAHRVSTIL----D-ADLVLVLSRGILVECDTPENL 241 (257)
T ss_pred CEEEEeCCccCCCHH-------HHHHHHHHHHHhc-CCCEEEEEecChHHHH----h-CCEEEEEECCEEEEeCCHHHH
Confidence 999999999999973 2234444444443 4899999999998875 3 788888988888766655554
No 287
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.80 E-value=1e-20 Score=199.57 Aligned_cols=172 Identities=22% Similarity=0.227 Sum_probs=137.4
Q ss_pred EECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-----ccccccccCCCCcccccchHHHHHHHHhc--CC--------
Q 038045 70 LAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-----SSRVVDGNFDDPRLTDYDTLLENVRDLRE--GK-------- 133 (621)
Q Consensus 70 I~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-----~~R~Ig~vfQdp~l~d~~tV~enL~~L~~--gk-------- 133 (621)
|+||||||||||+++|+|++ |+.|.|.++|... ..+.++|+||++.+|+++++.+|+.+... +.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 68999999999999999999 8999999998632 23579999999999999999999986421 10
Q ss_pred ------CccCc-cccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHH-HHHcCCC
Q 038045 134 ------PVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRD-IQRVGQE 205 (621)
Q Consensus 134 ------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rd-l~erG~T 205 (621)
.+.+. ..+.....+|+|++|+++.+++++.+|.++++|||++.||... ...+.++.+. .++.|.|
T Consensus 81 ~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~-------~~~l~~~l~~l~~~~g~t 153 (325)
T TIGR01187 81 VLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKL-------RDQMQLELKTIQEQLGIT 153 (325)
T ss_pred HHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHH-------HHHHHHHHHHHHHhcCCE
Confidence 01111 1344567899999999999999999999999999999999732 2334444444 3455999
Q ss_pred ceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEEecCCCCC
Q 038045 206 PEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIYLLPPGED 252 (621)
Q Consensus 206 i~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIYi~P~~~~ 252 (621)
++.++|+++++. .++|++.++.+|.+.+.+++.++|-.|.+..
T Consensus 154 iiivTHd~~e~~----~~~d~i~vl~~G~i~~~g~~~~~~~~~~~~~ 196 (325)
T TIGR01187 154 FVFVTHDQEEAM----TMSDRIAIMRKGKIAQIGTPEEIYEEPANLF 196 (325)
T ss_pred EEEEeCCHHHHH----HhCCEEEEEECCEEEEEcCHHHHHhCCCcHH
Confidence 999999999887 7889999999999998888888876665543
No 288
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.80 E-value=4.9e-20 Score=172.63 Aligned_cols=140 Identities=16% Similarity=0.184 Sum_probs=115.2
Q ss_pred ecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccccccccccCCCCccc
Q 038045 39 QDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDSSRVVDGNFDDPRLT 117 (621)
Q Consensus 39 ~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~~R~Ig~vfQdp~l~ 117 (621)
.+++++.++...++++++|++++|+ +++|+||||||||||+++|+|++ |..|.|.+||. +.++|++|
T Consensus 3 ~~~l~~~~~~~~~l~~~~~~~~~Ge---~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~----~~i~~~~~----- 70 (144)
T cd03221 3 LENLSKTYGGKLLLKDISLTINPGD---RIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST----VKIGYFEQ----- 70 (144)
T ss_pred EEEEEEEECCceEEEeeEEEECCCC---EEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe----EEEEEEcc-----
Confidence 4567777776789999999999999 99999999999999999999999 89999999984 45777776
Q ss_pred ccchHHHHHHHHhcCCCccCccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHH
Q 038045 118 DYDTLLENVRDLREGKPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLR 197 (621)
Q Consensus 118 d~~tV~enL~~L~~gk~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~R 197 (621)
.|+|+++++..+++++.+|.++++|||++.+|.. ..+.+..+
T Consensus 71 -----------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~-------~~~~l~~~-- 112 (144)
T cd03221 71 -----------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLE-------SIEALEEA-- 112 (144)
T ss_pred -----------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH-------HHHHHHHH--
Confidence 7889999999999999999999999999999972 12233333
Q ss_pred HHHHcCCCceehHhHHHHHhccccccchhhhcCCCC
Q 038045 198 DIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEG 233 (621)
Q Consensus 198 dl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg 233 (621)
+++.+.|+..++|+.+... .++|++.++.+|
T Consensus 113 -l~~~~~til~~th~~~~~~----~~~d~v~~l~~g 143 (144)
T cd03221 113 -LKEYPGTVILVSHDRYFLD----QVATKIIELEDG 143 (144)
T ss_pred -HHHcCCEEEEEECCHHHHH----HhCCEEEEEeCC
Confidence 3344679999999998876 556666666544
No 289
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.80 E-value=1.6e-20 Score=210.73 Aligned_cols=191 Identities=14% Similarity=0.128 Sum_probs=148.2
Q ss_pred eeecceeeeeCc--EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-------cccc
Q 038045 37 PIQDPLSFEKGF--FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-------SSRV 106 (621)
Q Consensus 37 ~v~~~lsf~~G~--~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-------~~R~ 106 (621)
...++++|.|.. ..+|+++||++++|+ .++|+|+||||||||++.|+|++ |..|.|.+||... .++.
T Consensus 342 i~~~~vsf~y~~~~~~il~~i~l~i~~G~---~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 418 (582)
T PRK11176 342 IEFRNVTFTYPGKEVPALRNINFKIPAGK---TVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQ 418 (582)
T ss_pred EEEEEEEEecCCCCCccccCceEEeCCCC---EEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhh
Confidence 456788888753 679999999999999 89999999999999999999999 9999999999632 2357
Q ss_pred ccccCCCCcccccchHHHHHHHHhcCC-----------Cc-------cCc-ccccc----ccCccCCceeecCCccEEEE
Q 038045 107 VDGNFDDPRLTDYDTLLENVRDLREGK-----------PV-------QVP-IYDFE----SSSRTGYRTVEVPSSRIVII 163 (621)
Q Consensus 107 Ig~vfQdp~l~d~~tV~enL~~L~~gk-----------~V-------~~p-~yd~~----~~~rsggq~qrVa~ArVLIv 163 (621)
++|++|++.+|+ .|+++||....... .. ..| .++.. -..+||||+|+++.+|+++-
T Consensus 419 i~~v~Q~~~lf~-~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~ 497 (582)
T PRK11176 419 VALVSQNVHLFN-DTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLR 497 (582)
T ss_pred ceEEccCceeec-chHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHh
Confidence 999999999886 69999998632110 00 011 12222 24579999999999999999
Q ss_pred ecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCcee
Q 038045 164 EGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYD 243 (621)
Q Consensus 164 EG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aD 243 (621)
+|.++++|||++.||.. .+..+.+.+.+ + ..++|++.|+|+.... ..+|++.++++|.+...+++.+
T Consensus 498 ~~~ililDEptsaLD~~------t~~~i~~~l~~-~-~~~~tvI~VtHr~~~~-----~~~D~Ii~l~~g~i~e~g~~~~ 564 (582)
T PRK11176 498 DSPILILDEATSALDTE------SERAIQAALDE-L-QKNRTSLVIAHRLSTI-----EKADEILVVEDGEIVERGTHAE 564 (582)
T ss_pred CCCEEEEECccccCCHH------HHHHHHHHHHH-H-hCCCEEEEEecchHHH-----HhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999973 22233333332 2 2478999999998654 4577788889998888888777
Q ss_pred E
Q 038045 244 I 244 (621)
Q Consensus 244 I 244 (621)
+
T Consensus 565 l 565 (582)
T PRK11176 565 L 565 (582)
T ss_pred H
Confidence 6
No 290
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.80 E-value=4.9e-20 Score=204.07 Aligned_cols=175 Identities=13% Similarity=0.132 Sum_probs=139.9
Q ss_pred EEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc--------cccccccCCCCc---cc
Q 038045 50 VVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS--------SRVVDGNFDDPR---LT 117 (621)
Q Consensus 50 ~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~--------~R~Ig~vfQdp~---l~ 117 (621)
.+++++||.+++|+ ++||+||||||||||+++|+|++ |..|.|.++|.... ++.++|++|++. .+
T Consensus 267 ~~l~~isl~i~~Ge---~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 343 (501)
T PRK11288 267 GLREPISFSVRAGE---IVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGII 343 (501)
T ss_pred CcccceeEEEeCCc---EEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCc
Confidence 48999999999999 99999999999999999999999 89999999986321 246899999974 78
Q ss_pred ccchHHHHHHHHhc------C----------------CCccC--ccccccccCccCCceeecCCccEEEEecceeccccc
Q 038045 118 DYDTLLENVRDLRE------G----------------KPVQV--PIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKL 173 (621)
Q Consensus 118 d~~tV~enL~~L~~------g----------------k~V~~--p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp 173 (621)
+.+++.+|+..... + +.+.+ ...+.....+|+|+++++..+++++.+|.++++|||
T Consensus 344 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEP 423 (501)
T PRK11288 344 PVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEP 423 (501)
T ss_pred CCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCC
Confidence 88999999864210 0 00112 123445678999999999999999999999999999
Q ss_pred cCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeec
Q 038045 174 RPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETM 238 (621)
Q Consensus 174 ~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~ 238 (621)
++.||+. ..+.+.++.+.+.+.|.|++.++|+++.+. ..+|++.++.+|.+...
T Consensus 424 t~~LD~~-------~~~~l~~~l~~l~~~g~tviivsHd~~~~~----~~~d~i~~l~~g~i~~~ 477 (501)
T PRK11288 424 TRGIDVG-------AKHEIYNVIYELAAQGVAVLFVSSDLPEVL----GVADRIVVMREGRIAGE 477 (501)
T ss_pred CCCCCHh-------HHHHHHHHHHHHHhCCCEEEEECCCHHHHH----hhCCEEEEEECCEEEEE
Confidence 9999973 234555565666677999999999999887 77788888887766543
No 291
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.80 E-value=3e-20 Score=213.15 Aligned_cols=191 Identities=17% Similarity=0.156 Sum_probs=148.9
Q ss_pred eeecceeeeeC--cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-------cccc
Q 038045 37 PIQDPLSFEKG--FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-------SSRV 106 (621)
Q Consensus 37 ~v~~~lsf~~G--~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-------~~R~ 106 (621)
...++++|.|+ ...+|+++||++++|+ .++|+|+||||||||++.|+|++ |..|.|.+||... .++.
T Consensus 464 I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~---~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~ 540 (694)
T TIGR03375 464 IEFRNVSFAYPGQETPALDNVSLTIRPGE---KVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRN 540 (694)
T ss_pred EEEEEEEEEeCCCCccceeeeeEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhc
Confidence 46778999885 3569999999999999 99999999999999999999999 9999999999632 2457
Q ss_pred ccccCCCCcccccchHHHHHHHHhcCC----------Cc-------cCc-cccc----cccCccCCceeecCCccEEEEe
Q 038045 107 VDGNFDDPRLTDYDTLLENVRDLREGK----------PV-------QVP-IYDF----ESSSRTGYRTVEVPSSRIVIIE 164 (621)
Q Consensus 107 Ig~vfQdp~l~d~~tV~enL~~L~~gk----------~V-------~~p-~yd~----~~~~rsggq~qrVa~ArVLIvE 164 (621)
+++++|++.+|+ .|+++||....... .. ..| .|+. .-..+||||+|+++.+|+++-+
T Consensus 541 i~~v~Q~~~lf~-~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~ 619 (694)
T TIGR03375 541 IGYVPQDPRLFY-GTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRD 619 (694)
T ss_pred cEEECCChhhhh-hhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence 999999999887 59999997543210 00 111 1222 2246899999999999999999
Q ss_pred cceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 165 GIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 165 G~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
|.++++|||++.+|.. ..+.+.+..+.. ..+.|.+.|+|+.... ..+|++.++++|.+...+++.++
T Consensus 620 p~iliLDE~Ts~LD~~-------te~~i~~~l~~~-~~~~T~iiItHrl~~~-----~~~D~iivl~~G~i~e~G~~~eL 686 (694)
T TIGR03375 620 PPILLLDEPTSAMDNR-------SEERFKDRLKRW-LAGKTLVLVTHRTSLL-----DLVDRIIVMDNGRIVADGPKDQV 686 (694)
T ss_pred CCEEEEeCCCCCCCHH-------HHHHHHHHHHHH-hCCCEEEEEecCHHHH-----HhCCEEEEEeCCEEEeeCCHHHH
Confidence 9999999999999973 222333333332 2478999999998754 45788888999999888877665
No 292
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.80 E-value=2e-20 Score=220.30 Aligned_cols=198 Identities=18% Similarity=0.221 Sum_probs=158.8
Q ss_pred eeecceeeeeCcE---EEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcc-------cccc
Q 038045 37 PIQDPLSFEKGFF---VVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYN-------DSSR 105 (621)
Q Consensus 37 ~v~~~lsf~~G~~---~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~-------~~~R 105 (621)
...+++.|.|..+ .+|+++||.+++|+ +|+|+|||||||||++..|++++ |..|.|.+||.+ +.+.
T Consensus 351 ief~nV~FsYPsRpdv~Il~g~sl~i~~G~---~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~ 427 (1228)
T KOG0055|consen 351 IEFRNVCFSYPSRPDVKILKGVSLKIPSGQ---TVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRS 427 (1228)
T ss_pred eEEEEEEecCCCCCcchhhCCeEEEeCCCC---EEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHh
Confidence 4677888887644 69999999999999 99999999999999999999999 999999999973 2245
Q ss_pred cccccCCCCcccccchHHHHHHHHhcCCC-----------------ccCc-ccccc----ccCccCCceeecCCccEEEE
Q 038045 106 VVDGNFDDPRLTDYDTLLENVRDLREGKP-----------------VQVP-IYDFE----SSSRTGYRTVEVPSSRIVII 163 (621)
Q Consensus 106 ~Ig~vfQdp~l~d~~tV~enL~~L~~gk~-----------------V~~p-~yd~~----~~~rsggq~qrVa~ArVLIv 163 (621)
.+|.|+|+|.+| ..|+.|||.+.+.+.. ...| .|+-. -.++||||+||+++||+++-
T Consensus 428 ~iglV~QePvlF-~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~ 506 (1228)
T KOG0055|consen 428 QIGLVSQEPVLF-ATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVR 506 (1228)
T ss_pred hcCeeeechhhh-cccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHh
Confidence 799999999665 5799999987653310 0111 23322 23589999999999999999
Q ss_pred ecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCcee
Q 038045 164 EGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYD 243 (621)
Q Consensus 164 EG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aD 243 (621)
+|.+||+||+++.||. ...+..+..++. ...|+|.+.|.|++.... -+|.++++++|.+.+.+...+
T Consensus 507 ~P~ILLLDEaTSaLD~-------~se~~Vq~ALd~-~~~grTTivVaHRLStIr-----naD~I~v~~~G~IvE~G~h~E 573 (1228)
T KOG0055|consen 507 NPKILLLDEATSALDA-------ESERVVQEALDK-ASKGRTTIVVAHRLSTIR-----NADKIAVMEEGKIVEQGTHDE 573 (1228)
T ss_pred CCCEEEecCcccccCH-------HHHHHHHHHHHH-hhcCCeEEEEeeehhhhh-----ccCEEEEEECCEEEEecCHHH
Confidence 9999999999999996 334455554433 356999999999998875 378999999999999999999
Q ss_pred EEecCCCCC
Q 038045 244 IYLLPPGED 252 (621)
Q Consensus 244 IYi~P~~~~ 252 (621)
+...+ +.+
T Consensus 574 Li~~~-G~Y 581 (1228)
T KOG0055|consen 574 LIALG-GIY 581 (1228)
T ss_pred HHhcc-chH
Confidence 85544 554
No 293
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.79 E-value=1.3e-19 Score=193.10 Aligned_cols=194 Identities=16% Similarity=0.218 Sum_probs=158.4
Q ss_pred eCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhCC------CeeEEEECCcccc-----------ccccc
Q 038045 46 KGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFMP------SIAVISMDNYNDS-----------SRVVD 108 (621)
Q Consensus 46 ~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP------~sGvI~lDg~~~~-----------~R~Ig 108 (621)
.|...++++|||.+.+|| +++|+|.||||||..+..|.+++| .+|.|.++|.... -..|+
T Consensus 20 ~~~~~aVk~isf~i~~GE---tlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~ 96 (534)
T COG4172 20 GGTVEAVKGISFDIEAGE---TLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIG 96 (534)
T ss_pred CcceEeeccceeeecCCC---EEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceE
Confidence 358889999999999999 999999999999999999999995 3689999987311 12689
Q ss_pred ccCCCCc--ccccchHHHHHHHHh---cC--------------CCccCc----cccccccCccCCceeecCCccEEEEec
Q 038045 109 GNFDDPR--LTDYDTLLENVRDLR---EG--------------KPVQVP----IYDFESSSRTGYRTVEVPSSRIVIIEG 165 (621)
Q Consensus 109 ~vfQdp~--l~d~~tV~enL~~L~---~g--------------k~V~~p----~yd~~~~~rsggq~qrVa~ArVLIvEG 165 (621)
|+||+|. +.|..|+.+.|.... .+ +.+.+| .++..++++|||+.|+|-++-+++.||
T Consensus 97 MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P 176 (534)
T COG4172 97 MIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEP 176 (534)
T ss_pred EEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCC
Confidence 9999995 678888877776532 11 112232 356668999999999999999999999
Q ss_pred ceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEE
Q 038045 166 IYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIY 245 (621)
Q Consensus 166 ~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIY 245 (621)
.+++.|||+..||..+.. +.+.-++...++.|+.+..||||+..+. .++|++++|..|.+..++...++|
T Consensus 177 ~lLIADEPTTALDVtvQa------QIL~Ll~~Lq~~~gMa~lfITHDL~iVr----~~ADrV~VM~~G~ivE~~~t~~lF 246 (534)
T COG4172 177 DLLIADEPTTALDVTVQA------QILDLLKELQAELGMAILFITHDLGIVR----KFADRVYVMQHGEIVETGTTETLF 246 (534)
T ss_pred CeEeecCCcchhhhhhHH------HHHHHHHHHHHHhCcEEEEEeccHHHHH----HhhhhEEEEeccEEeecCcHHHHh
Confidence 999999999999986522 4455555555677999999999999887 889999999999999999999998
Q ss_pred ecCCCCC
Q 038045 246 LLPPGED 252 (621)
Q Consensus 246 i~P~~~~ 252 (621)
..|...+
T Consensus 247 ~~PqHpY 253 (534)
T COG4172 247 AAPQHPY 253 (534)
T ss_pred hCCCChH
Confidence 7776653
No 294
>KOG4203 consensus Armadillo/beta-Catenin/plakoglobin [Signal transduction mechanisms; Cytoskeleton]
Probab=99.79 E-value=1.4e-20 Score=207.36 Aligned_cols=398 Identities=22% Similarity=0.279 Sum_probs=308.5
Q ss_pred CCCcceEEEEECCCCCcHHHHHHHHHhhC--------CCeeE-EEECCcccc-------cccc-cccCCCCcccccchHH
Q 038045 61 KNDGIILIGLAGPSGAGKTIFTEKILNFM--------PSIAV-ISMDNYNDS-------SRVV-DGNFDDPRLTDYDTLL 123 (621)
Q Consensus 61 ~Ge~~iIVGI~GpSGSGKSTLlr~LagLl--------P~sGv-I~lDg~~~~-------~R~I-g~vfQdp~l~d~~tV~ 123 (621)
.+..++++|+.|.++|||||.+..+...+ |..-+ ++.|-++.. .... -|.|++|+.|++.++.
T Consensus 40 ~~~~~~~igv~~~s~~Gk~~~~~~i~~~l~~~~~~~~~~~v~~ls~~~fY~~lt~~~~~~a~~~~~~f~~pda~~~~l~~ 119 (473)
T KOG4203|consen 40 EGKEPFVIGVAGGTASGKSTVCEKIVEQLGAIERDGRQPQVVLLSQDSFYKVLTSEELAKAQEGKYNFDHPDAFDFELLY 119 (473)
T ss_pred cCcceEEEEeecCcccCceeehHHHHHHhhhhhhccCCCeEEEeecHHHHHhhchHHHHHhhhccccccCCCCcchhhHH
Confidence 45678999999999999999777766544 12222 222223211 1223 3899999999999999
Q ss_pred HHHHHHhcCCCccCccccccccCccCCceeecCCccEEEEecceeccc-cccCCCCeeEEecCCchHHHHHHHHHHHHHc
Q 038045 124 ENVRDLREGKPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSE-KLRPLLDLRVSVTGGVHFDLVKRVLRDIQRV 202 (621)
Q Consensus 124 enL~~L~~gk~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlD-Ep~s~LDlkV~Vd~~~d~~LirRI~Rdl~er 202 (621)
..+..+.+++.+..|.|++..+.+.......+.++.++++||.+.++| +.+..+|.++|++++.+.++.+++.|++.++
T Consensus 120 ~~~~~~~kg~~v~ip~y~~~~~~~~~~~~~~l~~~~~~ilegil~~yd~~~~~l~~~k~fvd~~~d~rla~ri~r~~~~~ 199 (473)
T KOG4203|consen 120 LTLKNLKKGKAVEIPVYDFVTHSRDEEKTIVVYPADVIILEGILAFYDERVRDLFTMKLFVDTDADVRLARRILRDIVER 199 (473)
T ss_pred HHHhcccccceeeceeeeeecccCCCCceEEecCCCceeehhHHHHhHHHHHHHhcceEEEecCcchhhHHHHhcchhhh
Confidence 999999999999999999999888776678889999999999999986 6889999999999999999999999999999
Q ss_pred CCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEEecCCCCCcccccceeEEeecCCeeEEEeeeeecCCCe
Q 038045 203 GQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIYLLPPGEDPESCQSYLRMRNKDGKYSLMFEEWVTDIPF 282 (621)
Q Consensus 203 G~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIYi~P~~~~~e~~~d~Irvr~~~g~~~L~f~e~i~d~~f 282 (621)
|.++..+..+|.... + ..++.+++|++.++|+ ++|...+.....+.+
T Consensus 200 g~~l~~i~~q~~~f~----k------p~~~~~i~p~~~~ad~-ii~~~~~n~vai~l~---------------------- 246 (473)
T KOG4203|consen 200 GRDLESILTQYSTFV----K------PAFEEFILPTKKYADV-IIPRGGDNDVAIDLI---------------------- 246 (473)
T ss_pred cccHHHHHHHHHhhc----C------chHHHHhhHHHHhhhh-eeeccccccccceee----------------------
Confidence 999999998887632 3 4677899999999999 577776542221111
Q ss_pred EeccceeeEEEeeeecceeccCceEEEEEeecceeeeCCCceEEehhhHhhcCceeEEEecccHHHHHHHHHHhCCCCCc
Q 038045 283 VISPRITFEVSVRLLGGLMALGYTIATILKRSSHVFCDDRGVCVKIDWLEQLNRQYIQVQGKDRLIVKNVAEQLGLEGSY 362 (621)
Q Consensus 283 Ii~P~~~FeV~~~~LgGll~lgy~i~~~~~~~~~i~~d~~gv~i~v~~le~l~~~~i~i~g~~r~~V~~~~~~L~l~g~~ 362 (621)
+.+ +++-+..-++.
T Consensus 247 -~~~---------i~~~L~~~~~~-------------------------------------------------------- 260 (473)
T KOG4203|consen 247 -VQH---------ILSILAEKSYV-------------------------------------------------------- 260 (473)
T ss_pred -ehh---------hhhhhhccccc--------------------------------------------------------
Confidence 000 00000000010
Q ss_pred cchhHHHHHHHHhhhhhhhcCCh--hhhhccccCcccccCchhhhhhhhhhHHHhhhhcccCCCCcccccCCCCCccccc
Q 038045 363 VPRTYIEQIQLEKLVNEVMALPE--DLKTKLSLDEDLVSSPKEALSRASASRVAMRNKNLRSGMSHSYSTQGDKNLSKLT 440 (621)
Q Consensus 363 i~~~y~e~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (621)
+|++.++.+|+ +++.+++...+...+.-+- ...++++++ +++.+.+.++.|.....+.+.+++
T Consensus 261 ------------~l~~~~~~l~~t~~i~~~~t~~~~~~Ts~~~~--~~~~~~~vr-l~l~~~~~~~p~~~~~i~~~~~~~ 325 (473)
T KOG4203|consen 261 ------------RLYNNVLSLPDTNQIKGKLTLLRDHTTSRHPF--SFYSDHLVR-LVLEHGLGHLPYTEKRIVTPRGLA 325 (473)
T ss_pred ------------cccccceecCCccccCCceeEeecCCcCCCCH--HHHHHHHHH-HHhhcccCcccceeeeEecccccc
Confidence 78888888888 9999997776666542221 134455444 999999999999999999999999
Q ss_pred cccccccccCCCCCCCccccccccchhhHHHHHhhhhhhhhhHhh-HHHHHHhhhc-cCCCccccccc---ccccccCCC
Q 038045 441 GYVMNDRRFDGRSVESSATLASHGVITHLSEQISSLTDRMDDFTT-HIEELNAKLT-KKNSSSQQNMA---LPAEACNGS 515 (621)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~ 515 (621)
....+.. +...+...|...-+.+.+.+.+.+ +.||++++. |.++.+.+-. ....|.+++.- +.+..|||+
T Consensus 326 ~~~~~~~-~~i~gv~i~r~g~~~~~alr~~~~----~vri~~il~qr~~~t~~~~l~~~~lP~~is~~V~ll~p~~~tg~ 400 (473)
T KOG4203|consen 326 YSGVNFC-KQICGVSIPRSGESMETALRAACK----GVRIGKILIQRDEETGEPELHYEKLPKDISDRVLLLDPVLATGN 400 (473)
T ss_pred hhccccc-chhccCCCCcchhHHHHHHHHHcC----CceeeeeEeechhhccchhhhhhhCccccccceeeecchhhcch
Confidence 9999988 777777777755555555555555 999999999 8888877444 55566666665 788889999
Q ss_pred CCcceeeccCCCCCcccCCCCCcccccccchHHHHhhhhhhhhHHHHhHhhHHHHHHHhhccc
Q 038045 516 APTSFFISSLGNGSLMPNSSSSSQLAKESPLMDEISGIVRGQRQVMHQLDNLSNLLHESMGER 578 (621)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (621)
++...|...+.+| .....++..+|...++.++|+....+++++|++|+|...|..+....+.
T Consensus 401 ~~~~a~~~ll~~g-v~~~~i~~~~ll~~~~~~~~~~~~f~~v~~v~~~~d~~~~~~~~~~pg~ 462 (473)
T KOG4203|consen 401 SAMMAIILLLDHG-VPEENIIFLNLLAAPQGIHEVAYAFPKVKIVTSQIDKLLNEKRYVVPGL 462 (473)
T ss_pred hHHHHHHHHHhCC-CcHHHhHHHHHHhhhhhhhHHHHhcccceeehhhhcccccccceECccc
Confidence 9999999999999 6777788889999999999999999999999999999999877666444
No 295
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.79 E-value=5e-20 Score=205.79 Aligned_cols=191 Identities=15% Similarity=0.189 Sum_probs=146.9
Q ss_pred eeecceeeeeC--cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-------cccc
Q 038045 37 PIQDPLSFEKG--FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-------SSRV 106 (621)
Q Consensus 37 ~v~~~lsf~~G--~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-------~~R~ 106 (621)
...++++|.|+ ...+++++||++++|+ .++|+||||||||||+++|+|++ |..|.|.+||... .++.
T Consensus 317 i~~~~v~~~y~~~~~~~l~~~~~~i~~G~---~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~ 393 (544)
T TIGR01842 317 LSVENVTIVPPGGKKPTLRGISFRLQAGE---ALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKH 393 (544)
T ss_pred EEEEEEEEEcCCCCccccccceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhh
Confidence 45678888874 3679999999999999 99999999999999999999999 8999999998632 2357
Q ss_pred ccccCCCCcccccchHHHHHHHHhcC---CC-------c-------cCc-ccc----ccccCccCCceeecCCccEEEEe
Q 038045 107 VDGNFDDPRLTDYDTLLENVRDLREG---KP-------V-------QVP-IYD----FESSSRTGYRTVEVPSSRIVIIE 164 (621)
Q Consensus 107 Ig~vfQdp~l~d~~tV~enL~~L~~g---k~-------V-------~~p-~yd----~~~~~rsggq~qrVa~ArVLIvE 164 (621)
++|++|+|.+|+. |+++|+...... +. . ..| .++ .....+||||+|+++.+|+++-+
T Consensus 394 i~~v~q~~~lf~~-ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~ 472 (544)
T TIGR01842 394 IGYLPQDVELFPG-TVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGD 472 (544)
T ss_pred eEEecCCcccccc-cHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcC
Confidence 9999999998874 999999743211 00 0 011 122 12356799999999999999999
Q ss_pred cceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCcee
Q 038045 165 GIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYD 243 (621)
Q Consensus 165 G~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aD 243 (621)
|.++++|||++.+|.. ..+.+.+..+.+...|.|++.++|+.... ..+|++.++++|.+...+++.+
T Consensus 473 ~~ililDEpts~LD~~-------~~~~i~~~l~~~~~~~~tvi~ith~~~~~-----~~~d~i~~l~~G~i~~~g~~~~ 539 (544)
T TIGR01842 473 PKLVVLDEPNSNLDEE-------GEQALANAIKALKARGITVVVITHRPSLL-----GCVDKILVLQDGRIARFGERDE 539 (544)
T ss_pred CCEEEEeCCccccCHH-------HHHHHHHHHHHHhhCCCEEEEEeCCHHHH-----HhCCEEEEEECCEEEeeCCHHH
Confidence 9999999999999972 23334444444444689999999998754 4577778888888877666544
No 296
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.79 E-value=3.7e-20 Score=180.41 Aligned_cols=195 Identities=16% Similarity=0.220 Sum_probs=155.1
Q ss_pred eeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcc-------cccccccccCCCCc
Q 038045 44 FEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYN-------DSSRVVDGNFDDPR 115 (621)
Q Consensus 44 f~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~-------~~~R~Ig~vfQdp~ 115 (621)
|.+..+.+++.|||++++|. .+||+|.||||||||+++|+|.. |++|.|.++|.. ...+.+.|+||+|+
T Consensus 21 f~r~~~~AV~~vSFtL~~~Q---TlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpn 97 (267)
T COG4167 21 FRRQTVEAVKPVSFTLREGQ---TLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPN 97 (267)
T ss_pred hhhhhhhcccceEEEecCCc---EEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCc
Confidence 44456679999999999999 99999999999999999999999 999999999862 12356899999997
Q ss_pred --ccccchHHHHHHHHhc-CCC----------------c-cCcc-ccccccCccCCceeecCCccEEEEecceecccccc
Q 038045 116 --LTDYDTLLENVRDLRE-GKP----------------V-QVPI-YDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLR 174 (621)
Q Consensus 116 --l~d~~tV~enL~~L~~-gk~----------------V-~~p~-yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~ 174 (621)
+.|...+.+.+...++ ... + -+|. .++.++.++.+++|+|+.||++|++|.+++.||..
T Consensus 98 ts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl 177 (267)
T COG4167 98 TSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEAL 177 (267)
T ss_pred cccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhh
Confidence 4566666666655321 100 0 1232 23446778889999999999999999999999999
Q ss_pred CCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEEecCCCC
Q 038045 175 PLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIYLLPPGE 251 (621)
Q Consensus 175 s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIYi~P~~~ 251 (621)
..||..+ ...++..+.....+.|.+.++|.+++-... -++|.+.||++|.+...+++++++..|...
T Consensus 178 ~~LD~sm------rsQl~NL~LeLQek~GiSyiYV~QhlG~iK----Hi~D~viVM~EG~vvE~G~t~~v~a~P~~~ 244 (267)
T COG4167 178 ASLDMSM------RSQLINLMLELQEKQGISYIYVTQHIGMIK----HISDQVLVMHEGEVVERGSTADVLASPLHE 244 (267)
T ss_pred hhccHHH------HHHHHHHHHHHHHHhCceEEEEechhhHhh----hhcccEEEEecCceeecCChhhhhcCCccH
Confidence 9999743 346677777777788999999999887665 677888899999999999999997666654
No 297
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.79 E-value=5.4e-20 Score=228.72 Aligned_cols=191 Identities=11% Similarity=0.051 Sum_probs=155.6
Q ss_pred eeecceeeeeC--cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc------ccccc
Q 038045 37 PIQDPLSFEKG--FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND------SSRVV 107 (621)
Q Consensus 37 ~v~~~lsf~~G--~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~------~~R~I 107 (621)
...+++++.++ .+.+|+++||.+.+|+ ++||+||||||||||+++|+|++ |+.|.|.++|... .++.+
T Consensus 929 L~I~nLsK~y~~~~k~aL~~lsl~I~~Ge---i~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~I 1005 (2272)
T TIGR01257 929 VCVKNLVKIFEPSGRPAVDRLNITFYENQ---ITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSL 1005 (2272)
T ss_pred EEEEeEEEEecCCCceEEEeeEEEEcCCc---EEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcE
Confidence 34667877773 5789999999999999 99999999999999999999999 9999999999742 13468
Q ss_pred cccCCCCcccccchHHHHHHHHhc--CC--------------CccCc-cccccccCccCCceeecCCccEEEEecceecc
Q 038045 108 DGNFDDPRLTDYDTLLENVRDLRE--GK--------------PVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYALS 170 (621)
Q Consensus 108 g~vfQdp~l~d~~tV~enL~~L~~--gk--------------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLl 170 (621)
|+++|++.+++.+|+.+++.+... +. .+.+. ..+...+.+|||+++++..+++++.+|.++++
T Consensus 1006 G~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLL 1085 (2272)
T TIGR01257 1006 GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVL 1085 (2272)
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999999999999999987432 11 01111 23445678999999999999999999999999
Q ss_pred ccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCce
Q 038045 171 EKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTY 242 (621)
Q Consensus 171 DEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~a 242 (621)
|||++.+|+. ..+.++++.+.++ .|.|++.++|+++++. ..+|+++++.+|.+...++..
T Consensus 1086 DEPTSGLDp~-------sr~~l~~lL~~l~-~g~TIIltTHdmdea~----~laDrI~iL~~GkL~~~Gs~~ 1145 (2272)
T TIGR01257 1086 DEPTSGVDPY-------SRRSIWDLLLKYR-SGRTIIMSTHHMDEAD----LLGDRIAIISQGRLYCSGTPL 1145 (2272)
T ss_pred ECCCcCCCHH-------HHHHHHHHHHHHh-CCCEEEEEECCHHHHH----HhCCEEEEEECCEEEEecCHH
Confidence 9999999973 3455666666664 5899999999999987 778888899988876655443
No 298
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.79 E-value=4.6e-20 Score=207.66 Aligned_cols=191 Identities=13% Similarity=0.094 Sum_probs=148.8
Q ss_pred eeecceeeeeCc--EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-------cccc
Q 038045 37 PIQDPLSFEKGF--FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-------SSRV 106 (621)
Q Consensus 37 ~v~~~lsf~~G~--~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-------~~R~ 106 (621)
...++++|.|+. ..+|+++||++++|+ +++|+||||||||||+++|+|++ |..|.|.+||... .++.
T Consensus 339 i~~~~v~f~y~~~~~~il~~i~~~i~~G~---~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 415 (574)
T PRK11160 339 LTLNNVSFTYPDQPQPVLKGLSLQIKAGE---KVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQA 415 (574)
T ss_pred EEEEEEEEECCCCCCcceecceEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhh
Confidence 567789998853 569999999999999 99999999999999999999999 9999999999732 2356
Q ss_pred ccccCCCCcccccchHHHHHHHHhcCC----------C------ccCc-cccc----cccCccCCceeecCCccEEEEec
Q 038045 107 VDGNFDDPRLTDYDTLLENVRDLREGK----------P------VQVP-IYDF----ESSSRTGYRTVEVPSSRIVIIEG 165 (621)
Q Consensus 107 Ig~vfQdp~l~d~~tV~enL~~L~~gk----------~------V~~p-~yd~----~~~~rsggq~qrVa~ArVLIvEG 165 (621)
+++++|++.+|+ .|+.+|+....... . +..| .||- ....+||||+|+++.+|+++-+|
T Consensus 416 i~~v~Q~~~lf~-~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~ 494 (574)
T PRK11160 416 ISVVSQRVHLFS-ATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDA 494 (574)
T ss_pred eeEEcccchhhc-ccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 999999999886 59999997643210 0 1101 1232 23458899999999999999999
Q ss_pred ceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 166 IYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 166 ~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
.++++|||++.+|.. ..+.+.+..+.. ..++|++.++|+..... .+|++.++++|.+...+++.++
T Consensus 495 ~ililDE~ts~lD~~-------t~~~i~~~l~~~-~~~~tviiitHr~~~~~-----~~d~i~~l~~G~i~~~g~~~~l 560 (574)
T PRK11160 495 PLLLLDEPTEGLDAE-------TERQILELLAEH-AQNKTVLMITHRLTGLE-----QFDRICVMDNGQIIEQGTHQEL 560 (574)
T ss_pred CEEEEeCCcccCCHH-------HHHHHHHHHHHH-cCCCEEEEEecChhHHH-----hCCEEEEEeCCeEEEeCCHHHH
Confidence 999999999999972 223333333333 24889999999987653 4678888999988887777665
No 299
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.79 E-value=5.9e-20 Score=204.08 Aligned_cols=164 Identities=20% Similarity=0.229 Sum_probs=127.1
Q ss_pred eeecceeeeeCc-EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc------cccccc
Q 038045 37 PIQDPLSFEKGF-FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND------SSRVVD 108 (621)
Q Consensus 37 ~v~~~lsf~~G~-~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~------~~R~Ig 108 (621)
...++++|.|+. ..+|+++||++++|+ .++|+||||||||||++.|.|++ |+.|.|.+||... .++.++
T Consensus 335 I~~~~vsf~Y~~~~~vL~~isl~i~~G~---~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~ 411 (529)
T TIGR02868 335 LELRDLSFGYPGSPPVLDGVSLDLPPGE---RVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRIS 411 (529)
T ss_pred EEEEEEEEecCCCCceeecceEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheE
Confidence 457889998864 469999999999999 99999999999999999999999 9999999999632 235799
Q ss_pred ccCCCCcccccchHHHHHHHHhcC---C-------C------c-cCc-ccccc----ccCccCCceeecCCccEEEEecc
Q 038045 109 GNFDDPRLTDYDTLLENVRDLREG---K-------P------V-QVP-IYDFE----SSSRTGYRTVEVPSSRIVIIEGI 166 (621)
Q Consensus 109 ~vfQdp~l~d~~tV~enL~~L~~g---k-------~------V-~~p-~yd~~----~~~rsggq~qrVa~ArVLIvEG~ 166 (621)
|++|+|.+|+ .|+++||...... + . + ..| .||-. -..+||||+||++.||+++-+|.
T Consensus 412 ~V~Q~~~lF~-~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~ 490 (529)
T TIGR02868 412 VFAQDAHLFD-TTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAP 490 (529)
T ss_pred EEccCccccc-ccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999885 5999999864321 0 0 0 112 13322 23579999999999999999999
Q ss_pred eeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhH
Q 038045 167 YALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQ 212 (621)
Q Consensus 167 lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd 212 (621)
++++|||++.+|.. .+....+.+. .. ..++|++.|+|+
T Consensus 491 iliLDE~TSaLD~~------te~~I~~~l~-~~-~~~~TvIiItHr 528 (529)
T TIGR02868 491 ILLLDEPTEHLDAG------TESELLEDLL-AA-LSGKTVVVITHH 528 (529)
T ss_pred EEEEeCCcccCCHH------HHHHHHHHHH-Hh-cCCCEEEEEecC
Confidence 99999999999972 1222222222 21 347899999997
No 300
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=99.79 E-value=4.6e-19 Score=184.84 Aligned_cols=191 Identities=17% Similarity=0.268 Sum_probs=144.1
Q ss_pred CCcceEEEEECCCCCcHHHHHHHHHhhC---CC---eeEEEECCccccc---ccccc--cCCCCcccccchHHHHHHHHh
Q 038045 62 NDGIILIGLAGPSGAGKTIFTEKILNFM---PS---IAVISMDNYNDSS---RVVDG--NFDDPRLTDYDTLLENVRDLR 130 (621)
Q Consensus 62 Ge~~iIVGI~GpSGSGKSTLlr~LagLl---P~---sGvI~lDg~~~~~---R~Ig~--vfQdp~l~d~~tV~enL~~L~ 130 (621)
...|++|||+||||||||||+++|.+++ |+ +..|++|||+... +..++ .+..|..|+...+.+.+..++
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~~~~g~P~s~D~~~l~~~L~~Lk 138 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLMKKKGFPESYDMHRLVKFLSDLK 138 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcCCccccCCChhccHHHHHHHHHHHH
Confidence 3567899999999999999999999987 33 3457889986532 12232 345577788888888888888
Q ss_pred cCCC-ccCccccccccCccCCceeecCCccEEEEecceeccc-c----------ccCCCCeeEEecCCchHHHHHHHHHH
Q 038045 131 EGKP-VQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSE-K----------LRPLLDLRVSVTGGVHFDLVKRVLRD 198 (621)
Q Consensus 131 ~gk~-V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlD-E----------p~s~LDlkV~Vd~~~d~~LirRI~Rd 198 (621)
.++. +..|.|++..+++..+....+...+++|+||.++|.+ + +.+.+|.+||||++.+....|++.|.
T Consensus 139 ~g~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIiIvEGi~vL~~~~~~~~~~~~~~~~d~~D~~IyvDa~~d~~~~w~i~R~ 218 (290)
T TIGR00554 139 SGKPNVTAPVYSHLTYDVIPDGFKVVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAEEDLLQTWYINRF 218 (290)
T ss_pred CCCCceecCccccccCCcCCCCeEEcCCCCEEEECCchHhCCchhcccccchHHHHHhCCEEEEEECCHHHHHHHHHHHH
Confidence 8875 9999999999888877667778899999999988864 3 35899999999999998887766664
Q ss_pred --HHHcC-CCceehHhHHH-----HHhccc-cccchhhhcCCCCceeeccCceeEEecCCCCCc
Q 038045 199 --IQRVG-QEPEEIIQQIS-----ETSAKN-LSVDQIKAVYPEGHTETMEQTYDIYLLPPGEDP 253 (621)
Q Consensus 199 --l~erG-~Ti~~VtHd~e-----ea~~R~-v~~~d~iavl~eg~Ie~~~~~aDIYi~P~~~~~ 253 (621)
+.+++ .++..+.|+|. ++.... -.|...+.++...+|.|++..||+ +++.+.+.
T Consensus 219 ~~l~~~~~~~~~s~~~~~~~~~~~ea~~~~~~~w~~~~~~nl~~~I~Ptr~rAdl-Il~~~~~h 281 (290)
T TIGR00554 219 LKFREGAFTDPDSYFHNYAKLSKEEAIKTAMTIWKEINWLNLKQNILPTRERASL-ILTKGANH 281 (290)
T ss_pred HHHHHhhhcCcchhhhhhccCCHHHHHHHHHHHHHHcchhhHHhhCCCCcccccE-EEecCCCC
Confidence 33444 67788888872 221110 124556667888899999999999 56666654
No 301
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.79 E-value=9.5e-20 Score=187.11 Aligned_cols=178 Identities=13% Similarity=0.093 Sum_probs=136.5
Q ss_pred CcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccccccccccCCCCcccccchHHHH
Q 038045 47 GFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDSSRVVDGNFDDPRLTDYDTLLEN 125 (621)
Q Consensus 47 G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~~R~Ig~vfQdp~l~d~~tV~en 125 (621)
+.+.+++++||++++|+ ++||+||||||||||+++|+|++ |..|.|.++|. +++.++++..++..++.+|
T Consensus 35 ~~~~il~~is~~i~~Ge---~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~------~~~~~~~~~~~~~~tv~en 105 (264)
T PRK13546 35 KTFFALDDISLKAYEGD---VIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE------VSVIAISAGLSGQLTGIEN 105 (264)
T ss_pred CceEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCE------EeEEecccCCCCCCcHHHH
Confidence 55679999999999999 99999999999999999999998 89999999984 2344555555666788888
Q ss_pred HHHHhc--CCC--------------ccC-ccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCch
Q 038045 126 VRDLRE--GKP--------------VQV-PIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVH 188 (621)
Q Consensus 126 L~~L~~--gk~--------------V~~-p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d 188 (621)
+..... +.. ..+ +..+.....+|+|+++++..+++++.+|.++++|||++.||+. .
T Consensus 106 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~-------~ 178 (264)
T PRK13546 106 IEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQT-------F 178 (264)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHH-------H
Confidence 764211 100 011 1123345678999999999999999999999999999999972 2
Q ss_pred HHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 189 FDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 189 ~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
.+.+.++.+.+.+.|.|++.++|+..... .++|++.++..|.+...+...++
T Consensus 179 ~~~l~~~L~~~~~~g~tiIiisH~~~~i~----~~~d~i~~l~~G~i~~~g~~~~~ 230 (264)
T PRK13546 179 AQKCLDKIYEFKEQNKTIFFVSHNLGQVR----QFCTKIAWIEGGKLKDYGELDDV 230 (264)
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCCHHHHH----HHcCEEEEEECCEEEEeCCHHHH
Confidence 33444455555667999999999998876 66788888888888766555443
No 302
>PLN03211 ABC transporter G-25; Provisional
Probab=99.79 E-value=9.8e-20 Score=208.51 Aligned_cols=191 Identities=14% Similarity=0.077 Sum_probs=147.1
Q ss_pred cceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CC--eeEEEECCccc---ccccccccCCC
Q 038045 40 DPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PS--IAVISMDNYND---SSRVVDGNFDD 113 (621)
Q Consensus 40 ~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~--sGvI~lDg~~~---~~R~Ig~vfQd 113 (621)
+++++.++.+.+|+++|+++++|+ ++||+||||||||||+++|+|.. |+ .|.|.+||... ..+.++|++|+
T Consensus 72 ~~l~~~~~~~~iL~~vs~~i~~Ge---~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~ 148 (659)
T PLN03211 72 SDETRQIQERTILNGVTGMASPGE---ILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQD 148 (659)
T ss_pred ccccccCCCCeeeeCCEEEEECCE---EEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcc
Confidence 345556677889999999999999 99999999999999999999998 64 89999999742 23568999999
Q ss_pred CcccccchHHHHHHHHhc---CCC----------------ccCccc------cccccCccCCceeecCCccEEEEeccee
Q 038045 114 PRLTDYDTLLENVRDLRE---GKP----------------VQVPIY------DFESSSRTGYRTVEVPSSRIVIIEGIYA 168 (621)
Q Consensus 114 p~l~d~~tV~enL~~L~~---gk~----------------V~~p~y------d~~~~~rsggq~qrVa~ArVLIvEG~lL 168 (621)
+.+++.+|+.|++.+... ... ..+... +......|+|+++++..+++++.+|.++
T Consensus 149 ~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iL 228 (659)
T PLN03211 149 DILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 228 (659)
T ss_pred cccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEE
Confidence 999999999999976321 100 011111 1223568999999999999999999999
Q ss_pred ccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHH-HHhccccccchhhhcCCCCceeeccCceeE
Q 038045 169 LSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQIS-ETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 169 LlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~e-ea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
++|||++.||.. ....+.++.+.+.+.|.|++.++|+.. +.. ..+|.+.++.+|.+...++..++
T Consensus 229 lLDEPtsgLD~~-------~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~----~~~D~iilL~~G~iv~~G~~~~~ 294 (659)
T PLN03211 229 ILDEPTSGLDAT-------AAYRLVLTLGSLAQKGKTIVTSMHQPSSRVY----QMFDSVLVLSEGRCLFFGKGSDA 294 (659)
T ss_pred EEeCCCCCcCHH-------HHHHHHHHHHHHHhCCCEEEEEecCCCHHHH----HhhceEEEecCCcEEEECCHHHH
Confidence 999999999973 234455555556667999999999976 343 55677777888877666555443
No 303
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.7e-19 Score=199.15 Aligned_cols=184 Identities=15% Similarity=0.155 Sum_probs=141.1
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc--------cccc
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS--------SRVV 107 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~--------~R~I 107 (621)
...+++++. ...+++++||.+.+|+ ++||+||||||||||+++|+|+. |+.|.|.++|.... ++.+
T Consensus 251 i~~~~l~~~--~~~~l~~vsl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 325 (491)
T PRK10982 251 LEVRNLTSL--RQPSIRDVSFDLHKGE---ILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGF 325 (491)
T ss_pred EEEeCcccc--cCcccceeeEEEeCCc---EEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCC
Confidence 356677775 2469999999999999 99999999999999999999999 89999999985321 2348
Q ss_pred cccCCCC---cccccchHHHH-----HHHHhc--C---C------------CccC--ccccccccCccCCceeecCCccE
Q 038045 108 DGNFDDP---RLTDYDTLLEN-----VRDLRE--G---K------------PVQV--PIYDFESSSRTGYRTVEVPSSRI 160 (621)
Q Consensus 108 g~vfQdp---~l~d~~tV~en-----L~~L~~--g---k------------~V~~--p~yd~~~~~rsggq~qrVa~ArV 160 (621)
+|++|++ .+|+..++.+| +..... + . .+.+ ...+....++|+|+++++..+++
T Consensus 326 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~a 405 (491)
T PRK10982 326 ALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRW 405 (491)
T ss_pred EEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHH
Confidence 8999985 35676666554 322111 0 0 0111 12455678899999999999999
Q ss_pred EEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCcee
Q 038045 161 VIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTE 236 (621)
Q Consensus 161 LIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie 236 (621)
++.+|.++++|||++.+|+. ....+.++.+.+.+.|.|++.++|+++.+. ..+|++.++.+|.+.
T Consensus 406 l~~~p~illLDEPt~gLD~~-------~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~----~~~d~v~~l~~g~i~ 470 (491)
T PRK10982 406 LLTQPEILMLDEPTRGIDVG-------AKFEIYQLIAELAKKDKGIIIISSEMPELL----GITDRILVMSNGLVA 470 (491)
T ss_pred HhcCCCEEEEcCCCcccChh-------HHHHHHHHHHHHHHCCCEEEEECCChHHHH----hhCCEEEEEECCEEE
Confidence 99999999999999999973 234455556666677999999999999887 677877888777654
No 304
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.79 E-value=1.5e-19 Score=200.82 Aligned_cols=175 Identities=16% Similarity=0.133 Sum_probs=138.7
Q ss_pred EEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc--------cccccccCCCC---cccc
Q 038045 51 VIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS--------SRVVDGNFDDP---RLTD 118 (621)
Q Consensus 51 ~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~--------~R~Ig~vfQdp---~l~d 118 (621)
+|+++||.+++|+ ++||+||||||||||+++|+|++ |..|.|.++|.... ++.++|++|++ .+++
T Consensus 278 ~l~~isl~i~~Ge---~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~ 354 (510)
T PRK15439 278 GFRNISLEVRAGE---ILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYL 354 (510)
T ss_pred CccceeEEEcCCc---EEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccC
Confidence 5999999999999 99999999999999999999998 89999999986321 23589999985 4777
Q ss_pred cchHHHHHHHHh----c----CC-----------CccCc--cccccccCccCCceeecCCccEEEEecceeccccccCCC
Q 038045 119 YDTLLENVRDLR----E----GK-----------PVQVP--IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLL 177 (621)
Q Consensus 119 ~~tV~enL~~L~----~----gk-----------~V~~p--~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~L 177 (621)
..++.+++.... . .. .+.++ ..+.....+|+|+++++..+++++.+|.++++|||++.|
T Consensus 355 ~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gL 434 (510)
T PRK15439 355 DAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGV 434 (510)
T ss_pred CCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCc
Confidence 788888874310 0 00 11221 234556789999999999999999999999999999999
Q ss_pred CeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeecc
Q 038045 178 DLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETME 239 (621)
Q Consensus 178 DlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~ 239 (621)
|+. ..+.+.++.+.+.+.|.+++.++|+++.+. ..+|++.++++|.+....
T Consensus 435 D~~-------~~~~l~~~l~~l~~~g~tiIivsHd~~~i~----~~~d~i~~l~~G~i~~~~ 485 (510)
T PRK15439 435 DVS-------ARNDIYQLIRSIAAQNVAVLFISSDLEEIE----QMADRVLVMHQGEISGAL 485 (510)
T ss_pred Chh-------HHHHHHHHHHHHHhCCCEEEEECCCHHHHH----HhCCEEEEEECCEEEEEE
Confidence 973 244555666666667999999999999887 677888888888776443
No 305
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.78 E-value=1.4e-19 Score=176.21 Aligned_cols=143 Identities=15% Similarity=0.185 Sum_probs=116.6
Q ss_pred cceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccccccccccCCCCcccc
Q 038045 40 DPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDSSRVVDGNFDDPRLTD 118 (621)
Q Consensus 40 ~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~~R~Ig~vfQdp~l~d 118 (621)
.++++.+|.+.+++++ +.+++|+ +++|+||||||||||+++|+|++ |+.|.|.++|. .+++++|++.
T Consensus 4 ~~l~~~~~~~~~l~~~-~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~-----~i~~~~q~~~--- 71 (177)
T cd03222 4 PDCVKRYGVFFLLVEL-GVVKEGE---VIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI-----TPVYKPQYID--- 71 (177)
T ss_pred CCeEEEECCEEEEccC-cEECCCC---EEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCE-----EEEEEcccCC---
Confidence 4678888888999985 8999999 99999999999999999999999 89999999984 3667776542
Q ss_pred cchHHHHHHHHhcCCCccCccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHH
Q 038045 119 YDTLLENVRDLREGKPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRD 198 (621)
Q Consensus 119 ~~tV~enL~~L~~gk~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rd 198 (621)
+|+|+++++..+++++.+|.++++|||++.||.. ..+.+..+.+.
T Consensus 72 ----------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~-------~~~~l~~~l~~ 116 (177)
T cd03222 72 ----------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIE-------QRLNAARAIRR 116 (177)
T ss_pred ----------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHH-------HHHHHHHHHHH
Confidence 7899999999999999999999999999999973 23344444444
Q ss_pred HHHcC-CCceehHhHHHHHhccccccchhhhcCCCC
Q 038045 199 IQRVG-QEPEEIIQQISETSAKNLSVDQIKAVYPEG 233 (621)
Q Consensus 199 l~erG-~Ti~~VtHd~eea~~R~v~~~d~iavl~eg 233 (621)
+.+.+ .|++.++|+..... ..+|++.++.++
T Consensus 117 ~~~~~~~tiiivsH~~~~~~----~~~d~i~~l~~~ 148 (177)
T cd03222 117 LSEEGKKTALVVEHDLAVLD----YLSDRIHVFEGE 148 (177)
T ss_pred HHHcCCCEEEEEECCHHHHH----HhCCEEEEEcCC
Confidence 44454 89999999998876 555666556544
No 306
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.78 E-value=8.8e-20 Score=205.43 Aligned_cols=191 Identities=18% Similarity=0.242 Sum_probs=147.2
Q ss_pred eeecceeeeeCc-EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-------ccccc
Q 038045 37 PIQDPLSFEKGF-FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-------SSRVV 107 (621)
Q Consensus 37 ~v~~~lsf~~G~-~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-------~~R~I 107 (621)
...++++|.++. ..+++++|+++++|+ .++|+|+||||||||++.|+|++ |..|.|.+||... .++.+
T Consensus 335 I~~~~vsf~y~~~~~iL~~inl~i~~G~---~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 411 (588)
T PRK13657 335 VEFDDVSFSYDNSRQGVEDVSFEAKPGQ---TVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNI 411 (588)
T ss_pred EEEEEEEEEeCCCCceecceeEEECCCC---EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhhe
Confidence 457788888753 569999999999999 99999999999999999999999 8999999999631 23579
Q ss_pred cccCCCCcccccchHHHHHHHHhcCC---C-------------c-cCc-ccccc----ccCccCCceeecCCccEEEEec
Q 038045 108 DGNFDDPRLTDYDTLLENVRDLREGK---P-------------V-QVP-IYDFE----SSSRTGYRTVEVPSSRIVIIEG 165 (621)
Q Consensus 108 g~vfQdp~l~d~~tV~enL~~L~~gk---~-------------V-~~p-~yd~~----~~~rsggq~qrVa~ArVLIvEG 165 (621)
+|++|+|.+|+ .|+++|+....... . + ..| .++.. ...+||||+||++.+|+++-++
T Consensus 412 ~~v~Q~~~lf~-~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~ 490 (588)
T PRK13657 412 AVVFQDAGLFN-RSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDP 490 (588)
T ss_pred EEEecCccccc-ccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999886 69999998643210 0 0 011 12322 2358999999999999999999
Q ss_pred ceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 166 IYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 166 ~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
.++++|||++.+|.. ..+.+.+..+.. ..++|++.|+|+.... ..+|++.++.+|.+...+++.++
T Consensus 491 ~iliLDEpts~LD~~-------t~~~i~~~l~~~-~~~~tvIiitHr~~~~-----~~~D~ii~l~~G~i~~~g~~~~l 556 (588)
T PRK13657 491 PILILDEATSALDVE-------TEAKVKAALDEL-MKGRTTFIIAHRLSTV-----RNADRILVFDNGRVVESGSFDEL 556 (588)
T ss_pred CEEEEeCCccCCCHH-------HHHHHHHHHHHH-hcCCEEEEEEecHHHH-----HhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999962 222333323332 2479999999998654 45777788888888877777665
No 307
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.78 E-value=9.3e-20 Score=185.29 Aligned_cols=163 Identities=17% Similarity=0.232 Sum_probs=124.3
Q ss_pred EEeecceEE-----eCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccccccccccCCCCcccccchHHH
Q 038045 51 VIRACQLLA-----QKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDSSRVVDGNFDDPRLTDYDTLLE 124 (621)
Q Consensus 51 ~Lk~IsL~I-----~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~~R~Ig~vfQdp~l~d~~tV~e 124 (621)
.+++++|.+ ++|+ ++||+||||||||||+++|+|++ |..|.|.++|. .++|++|++..+...++.+
T Consensus 9 ~~~~~~l~~~~~~i~~Ge---~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~-----~i~~~~q~~~~~~~~tv~e 80 (246)
T cd03237 9 TLGEFTLEVEGGSISESE---VIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD-----TVSYKPQYIKADYEGTVRD 80 (246)
T ss_pred ccCcEEEEEecCCcCCCC---EEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc-----eEEEecccccCCCCCCHHH
Confidence 445555555 4789 99999999999999999999999 89999999984 6889999988777789999
Q ss_pred HHHHHhcC--C----------CccCc-cccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchHHH
Q 038045 125 NVRDLREG--K----------PVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDL 191 (621)
Q Consensus 125 nL~~L~~g--k----------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~L 191 (621)
++...... . .+.+. ..+.....+|+|++|++..+++++.+|.++++|||++.||+. ....
T Consensus 81 ~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~-------~~~~ 153 (246)
T cd03237 81 LLSSITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVE-------QRLM 153 (246)
T ss_pred HHHHHhhhccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH-------HHHH
Confidence 98643211 0 11111 234556789999999999999999999999999999999973 2233
Q ss_pred HHHHHHHH-HHcCCCceehHhHHHHHhccccccchhhhcCCC
Q 038045 192 VKRVLRDI-QRVGQEPEEIIQQISETSAKNLSVDQIKAVYPE 232 (621)
Q Consensus 192 irRI~Rdl-~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~e 232 (621)
+.++.+.+ .+.|.|++.++|+++.+. .++|++.++..
T Consensus 154 l~~~l~~~~~~~~~tiiivsHd~~~~~----~~~d~i~~l~~ 191 (246)
T cd03237 154 ASKVIRRFAENNEKTAFVVEHDIIMID----YLADRLIVFEG 191 (246)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHHH----HhCCEEEEEcC
Confidence 33444443 445899999999998876 56666666643
No 308
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.78 E-value=1.7e-19 Score=205.55 Aligned_cols=180 Identities=12% Similarity=0.086 Sum_probs=139.4
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccccccccccCCCC-
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDSSRVVDGNFDDP- 114 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~~R~Ig~vfQdp- 114 (621)
...+++++.++...+++++||.+.+|+ ++||+||||||||||+++|+|++ |+.|.|.++. . -.++|++|++
T Consensus 320 l~~~~l~~~~~~~~il~~vsl~i~~Ge---~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~-~---~~i~y~~q~~~ 392 (635)
T PRK11147 320 FEMENVNYQIDGKQLVKDFSAQVQRGD---KIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGT-K---LEVAYFDQHRA 392 (635)
T ss_pred EEEeeeEEEECCeEEEcCcEEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECC-C---cEEEEEeCccc
Confidence 457789999988899999999999999 99999999999999999999998 8999998842 1 2589999986
Q ss_pred cccccchHHHHHHHHhcCC--------------CccCc--cccccccCccCCceeecCCccEEEEecceeccccccCCCC
Q 038045 115 RLTDYDTLLENVRDLREGK--------------PVQVP--IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLD 178 (621)
Q Consensus 115 ~l~d~~tV~enL~~L~~gk--------------~V~~p--~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LD 178 (621)
.+++..++.+++....... .+... ..+.....+|+|+++++..+++++.+|.++++|||++.||
T Consensus 393 ~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD 472 (635)
T PRK11147 393 ELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLD 472 (635)
T ss_pred ccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 4788889999987632110 01111 1334467899999999999999999999999999999999
Q ss_pred eeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCC-CCceee
Q 038045 179 LRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYP-EGHTET 237 (621)
Q Consensus 179 lkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~-eg~Ie~ 237 (621)
+. ....+.+.+.+.+.|++.|+|+..... .+++++.++. +|.+..
T Consensus 473 ~~----------~~~~l~~~l~~~~~tvi~vSHd~~~~~----~~~d~i~~l~~~g~i~~ 518 (635)
T PRK11147 473 VE----------TLELLEELLDSYQGTVLLVSHDRQFVD----NTVTECWIFEGNGKIGR 518 (635)
T ss_pred HH----------HHHHHHHHHHhCCCeEEEEECCHHHHH----HhcCEEEEEeCCCeEEE
Confidence 73 223333344444569999999988776 5566666664 555443
No 309
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.78 E-value=1.8e-19 Score=201.95 Aligned_cols=175 Identities=14% Similarity=0.090 Sum_probs=138.2
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccccccccccCCCCc
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDSSRVVDGNFDDPR 115 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~~R~Ig~vfQdp~ 115 (621)
...+++++.++...+|+++||.+++|+ ++||+||||||||||+++|+|++ |..|.|.+++. ..++|++|++.
T Consensus 323 l~~~~l~~~~~~~~~l~~isl~i~~Ge---~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~----~~i~~v~q~~~ 395 (552)
T TIGR03719 323 IEAENLSKGFGDKLLIDDLSFKLPPGG---IVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGET----VKLAYVDQSRD 395 (552)
T ss_pred EEEeeEEEEECCeeeeccceEEEcCCC---EEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCc----eEEEEEeCCcc
Confidence 457788998888889999999999999 99999999999999999999998 89999998542 25899999974
Q ss_pred -ccccchHHHHHHHHhc--C------------CCccCc--cccccccCccCCceeecCCccEEEEecceeccccccCCCC
Q 038045 116 -LTDYDTLLENVRDLRE--G------------KPVQVP--IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLD 178 (621)
Q Consensus 116 -l~d~~tV~enL~~L~~--g------------k~V~~p--~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LD 178 (621)
+++..++.+++..... + ..+.+. ..+.....+|+|+++++..+++++.+|.++++|||++.||
T Consensus 396 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD 475 (552)
T TIGR03719 396 ALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLD 475 (552)
T ss_pred ccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Confidence 7788899999976321 0 011222 1244567899999999999999999999999999999999
Q ss_pred eeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCC
Q 038045 179 LRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPE 232 (621)
Q Consensus 179 lkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~e 232 (621)
+. ....+.+.+.+.+.+++.++|+.+... .++|++.++..
T Consensus 476 ~~----------~~~~l~~~l~~~~~~viivsHd~~~~~----~~~d~i~~l~~ 515 (552)
T TIGR03719 476 VE----------TLRALEEALLEFAGCAVVISHDRWFLD----RIATHILAFEG 515 (552)
T ss_pred HH----------HHHHHHHHHHHCCCeEEEEeCCHHHHH----HhCCEEEEEEC
Confidence 72 223333333343448999999998876 56676666764
No 310
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.78 E-value=3.5e-18 Score=176.76 Aligned_cols=167 Identities=26% Similarity=0.491 Sum_probs=137.9
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC-CCee-EEEECCccccc----ccccccCCCCcccccchHHHHHHHHhcCCCccCccc
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFM-PSIA-VISMDNYNDSS----RVVDGNFDDPRLTDYDTLLENVRDLREGKPVQVPIY 140 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLl-P~sG-vI~lDg~~~~~----R~Ig~vfQdp~l~d~~tV~enL~~L~~gk~V~~p~y 140 (621)
++||+|+||||||||+++|++++ +..+ +|++|+++... ...|+.+++|...+...+.+++..++.++.+..|.|
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~~~p~~~~~d~l~~~l~~Lk~g~~i~~P~y 80 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHSLDRKGRKETGITALDPRANNFDLMYEQLKALKEGQAIEKPIY 80 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccccCCHHHHHHhhcccccccchhHHHHHHHHHHHHCCCCcccccc
Confidence 58999999999999999999999 4334 78889885432 246778888877766778899999999999999999
Q ss_pred cccccCccCCceeecCCccEEEEecceeccc-cccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhcc
Q 038045 141 DFESSSRTGYRTVEVPSSRIVIIEGIYALSE-KLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAK 219 (621)
Q Consensus 141 d~~~~~rsggq~qrVa~ArVLIvEG~lLLlD-Ep~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R 219 (621)
++..+...+ ...+...+++|+||.+++.+ ++...+|.+||++++.+.++.|++.|+..++|.+.+.+...+....
T Consensus 81 ~~~~~~~~~--~~~i~~~~ivIvEG~~~l~~~~l~~~~D~~I~vd~~~e~r~~r~i~Rd~~rrG~s~e~v~~~i~~r~-- 156 (273)
T cd02026 81 NHVTGLIDP--PELIKPTKIVVIEGLHPLYDERVRELLDFSVYLDISDEVKFAWKIQRDMAERGHSLEDVLASIEARK-- 156 (273)
T ss_pred cccCCCcCC--cEEcCCCCEEEEeeehhhCchhhhhhccEEEEEECChhHHHHHHHHHHHHHhCCCHHHHHHHHHhhc--
Confidence 998776443 23466779999999987765 7889999999999999999999999999999999999998886543
Q ss_pred ccccchhhhcCCCCceeeccCceeEEe
Q 038045 220 NLSVDQIKAVYPEGHTETMEQTYDIYL 246 (621)
Q Consensus 220 ~v~~~d~iavl~eg~Ie~~~~~aDIYi 246 (621)
..+..++.|....||+++
T Consensus 157 ---------~~~~~~I~P~~~~ADvVI 174 (273)
T cd02026 157 ---------PDFEAYIDPQKQYADVVI 174 (273)
T ss_pred ---------hhHHHHhccccccCcEEE
Confidence 245668889999999865
No 311
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.78 E-value=1.5e-19 Score=200.83 Aligned_cols=187 Identities=12% Similarity=0.100 Sum_probs=141.2
Q ss_pred eecceeeeeCc---EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccccccccccCCC
Q 038045 38 IQDPLSFEKGF---FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDSSRVVDGNFDD 113 (621)
Q Consensus 38 v~~~lsf~~G~---~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~~R~Ig~vfQd 113 (621)
-.++++|.++. +.+|+++||++++|+ ++||+||||||||||+++|+|++ |..|.|.++|... .++ ..
T Consensus 23 ~lknL~~~~~~~~~~~IL~nVSfsI~~GE---ivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~---~i~---~~ 93 (549)
T PRK13545 23 KLKDLFFRSKDGEYHYALNNISFEVPEGE---IVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA---LIA---IS 93 (549)
T ss_pred EEEEEEEecCCCccceEEeeeEEEEeCCC---EEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee---eEE---ec
Confidence 45677777665 579999999999999 99999999999999999999999 8999999998531 111 12
Q ss_pred CcccccchHHHHHHHHh--cCC--------------CccCc-cccccccCccCCceeecCCccEEEEecceeccccccCC
Q 038045 114 PRLTDYDTLLENVRDLR--EGK--------------PVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPL 176 (621)
Q Consensus 114 p~l~d~~tV~enL~~L~--~gk--------------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~ 176 (621)
+.+++.+++.+|+.+.. .+. .+.+. ..+.....+|+|+++++..+++++.+|.++++|||++.
T Consensus 94 ~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsg 173 (549)
T PRK13545 94 SGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSV 173 (549)
T ss_pred cccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccc
Confidence 34456678888876522 110 01111 23445678999999999999999999999999999999
Q ss_pred CCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 177 LDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 177 LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
||+. ..+.+.++.+.+.+.|.|++.++|++.... ..+|++.++..|.+...+.+.++
T Consensus 174 LD~~-------sr~~LlelL~el~~~G~TIIIVSHdl~~i~----~l~DrIivL~~GkIv~~G~~~el 230 (549)
T PRK13545 174 GDQT-------FTKKCLDKMNEFKEQGKTIFFISHSLSQVK----SFCTKALWLHYGQVKEYGDIKEV 230 (549)
T ss_pred CCHH-------HHHHHHHHHHHHHhCCCEEEEEECCHHHHH----HhCCEEEEEECCEEEEECCHHHH
Confidence 9973 233444455555667999999999998876 66787888888877666555443
No 312
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.78 E-value=1.3e-19 Score=203.84 Aligned_cols=190 Identities=16% Similarity=0.164 Sum_probs=146.5
Q ss_pred eecceeeeeC--cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-------ccccc
Q 038045 38 IQDPLSFEKG--FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-------SSRVV 107 (621)
Q Consensus 38 v~~~lsf~~G--~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-------~~R~I 107 (621)
..++++|.+. ...+|+++||++++|+ +++|+||||||||||+++|+|++ |..|.|.+||... .++.+
T Consensus 315 ~~~~v~~~y~~~~~~~l~~i~~~i~~G~---~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 391 (569)
T PRK10789 315 DVNIRQFTYPQTDHPALENVNFTLKPGQ---MLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRL 391 (569)
T ss_pred EEEEEEEECCCCCCccccCeeEEECCCC---EEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhhe
Confidence 4667777764 3579999999999999 99999999999999999999999 8999999998732 23568
Q ss_pred cccCCCCcccccchHHHHHHHHhcCC----------Cc-------cCc-ccc----ccccCccCCceeecCCccEEEEec
Q 038045 108 DGNFDDPRLTDYDTLLENVRDLREGK----------PV-------QVP-IYD----FESSSRTGYRTVEVPSSRIVIIEG 165 (621)
Q Consensus 108 g~vfQdp~l~d~~tV~enL~~L~~gk----------~V-------~~p-~yd----~~~~~rsggq~qrVa~ArVLIvEG 165 (621)
++++|+|.+|+ .|+++|+....... .. ..| .++ .....+||||+|+++.+|+++-+|
T Consensus 392 ~~v~q~~~lf~-~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~ 470 (569)
T PRK10789 392 AVVSQTPFLFS-DTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNA 470 (569)
T ss_pred EEEccCCeecc-ccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999886 59999997542110 00 111 122 123468899999999999999999
Q ss_pred ceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 166 IYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 166 ~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
.++++|||++.||.. ..+.+.+..+.+ ..|.|++.++|+.... ..+|++.++++|.+...+++.++
T Consensus 471 ~illlDEpts~LD~~-------~~~~i~~~l~~~-~~~~tii~itH~~~~~-----~~~d~i~~l~~G~i~~~g~~~~l 536 (569)
T PRK10789 471 EILILDDALSAVDGR-------TEHQILHNLRQW-GEGRTVIISAHRLSAL-----TEASEILVMQHGHIAQRGNHDQL 536 (569)
T ss_pred CEEEEECccccCCHH-------HHHHHHHHHHHH-hCCCEEEEEecchhHH-----HcCCEEEEEeCCEEEEecCHHHH
Confidence 999999999999973 223333333443 2589999999998655 34677888888988877777665
No 313
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.78 E-value=1.2e-19 Score=204.98 Aligned_cols=191 Identities=18% Similarity=0.246 Sum_probs=148.1
Q ss_pred eeecceeeeeCc-EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-------ccccc
Q 038045 37 PIQDPLSFEKGF-FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-------SSRVV 107 (621)
Q Consensus 37 ~v~~~lsf~~G~-~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-------~~R~I 107 (621)
...++++|.|+. ..+++++||++++|+ .++|+||||||||||+++|+|++ |..|.|.+||... .++.+
T Consensus 335 i~~~~v~~~y~~~~~~l~~i~~~i~~G~---~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 411 (585)
T TIGR01192 335 VEFRHITFEFANSSQGVFDVSFEAKAGQ---TVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSI 411 (585)
T ss_pred EEEEEEEEECCCCCccccceeEEEcCCC---EEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhhe
Confidence 456789998864 568999999999999 99999999999999999999999 8999999998632 23578
Q ss_pred cccCCCCcccccchHHHHHHHHhcCC---C-------------c-cCc-ccc----ccccCccCCceeecCCccEEEEec
Q 038045 108 DGNFDDPRLTDYDTLLENVRDLREGK---P-------------V-QVP-IYD----FESSSRTGYRTVEVPSSRIVIIEG 165 (621)
Q Consensus 108 g~vfQdp~l~d~~tV~enL~~L~~gk---~-------------V-~~p-~yd----~~~~~rsggq~qrVa~ArVLIvEG 165 (621)
++++|++.+|+ .|+++|+....... . + ..| .++ .....+||||+|+++.+|+++-+|
T Consensus 412 ~~v~q~~~lf~-~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p 490 (585)
T TIGR01192 412 ATVFQDAGLFN-RSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNA 490 (585)
T ss_pred EEEccCCccCc-ccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999886 69999997642210 0 0 111 122 223467999999999999999999
Q ss_pred ceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 166 IYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 166 ~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
.++++|||++.||.. ..+.+.+..+.. ..+.|++.++|+.+... .+|++.++++|.+...+++.++
T Consensus 491 ~ililDEpts~LD~~-------~~~~i~~~l~~~-~~~~tvI~isH~~~~~~-----~~d~i~~l~~G~i~~~g~~~~l 556 (585)
T TIGR01192 491 PILVLDEATSALDVE-------TEARVKNAIDAL-RKNRTTFIIAHRLSTVR-----NADLVLFLDQGRLIEKGSFQEL 556 (585)
T ss_pred CEEEEECCccCCCHH-------HHHHHHHHHHHH-hCCCEEEEEEcChHHHH-----cCCEEEEEECCEEEEECCHHHH
Confidence 999999999999972 223333333333 34899999999987663 3777888888888777776665
No 314
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.78 E-value=3.7e-19 Score=199.78 Aligned_cols=175 Identities=14% Similarity=0.091 Sum_probs=138.0
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccccccccccCCCC-
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDSSRVVDGNFDDP- 114 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~~R~Ig~vfQdp- 114 (621)
...+++++.++...+|+++||++.+|+ ++||+||||||||||+++|+|++ |+.|.|.+++. ..++|++|++
T Consensus 325 l~~~~l~~~~~~~~~l~~isl~i~~Ge---~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~----~~i~~v~q~~~ 397 (556)
T PRK11819 325 IEAENLSKSFGDRLLIDDLSFSLPPGG---IVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGET----VKLAYVDQSRD 397 (556)
T ss_pred EEEEeEEEEECCeeeecceeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc----eEEEEEeCchh
Confidence 457788888888899999999999999 99999999999999999999999 89999998542 2589999997
Q ss_pred cccccchHHHHHHHHhcC-----C---------CccCc--cccccccCccCCceeecCCccEEEEecceeccccccCCCC
Q 038045 115 RLTDYDTLLENVRDLREG-----K---------PVQVP--IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLD 178 (621)
Q Consensus 115 ~l~d~~tV~enL~~L~~g-----k---------~V~~p--~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LD 178 (621)
.+++..++.+++...... . .+.+. ..+.....+|+|+++++..+++++.+|.++++|||++.||
T Consensus 398 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD 477 (556)
T PRK11819 398 ALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLD 477 (556)
T ss_pred hcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 677888999999763210 0 11222 1345567899999999999999999999999999999999
Q ss_pred eeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCC
Q 038045 179 LRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPE 232 (621)
Q Consensus 179 lkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~e 232 (621)
+. ..+.+..+.+ +.+.+++.++|+++... .++|++.++.+
T Consensus 478 ~~-------~~~~l~~~l~---~~~~tvi~vtHd~~~~~----~~~d~i~~l~~ 517 (556)
T PRK11819 478 VE-------TLRALEEALL---EFPGCAVVISHDRWFLD----RIATHILAFEG 517 (556)
T ss_pred HH-------HHHHHHHHHH---hCCCeEEEEECCHHHHH----HhCCEEEEEEC
Confidence 72 2233333333 33348999999998876 56666666654
No 315
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.6e-19 Score=199.82 Aligned_cols=190 Identities=18% Similarity=0.215 Sum_probs=150.9
Q ss_pred ecceeeeeCcE-EEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-------ccccccc
Q 038045 39 QDPLSFEKGFF-VVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-------SSRVVDG 109 (621)
Q Consensus 39 ~~~lsf~~G~~-~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-------~~R~Ig~ 109 (621)
.++++|.++.. .++.++||++++|+ .++|+|+||||||||++.|+|+. |+.|.|.++|... .++++.+
T Consensus 323 ~~~l~~~y~~g~~~l~~l~~t~~~g~---~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~ 399 (559)
T COG4988 323 LENLSFRYPDGKPALSDLNLTIKAGQ---LTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISW 399 (559)
T ss_pred ecceEEecCCCCcccCCceeEecCCc---EEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeee
Confidence 56888887655 89999999999999 89999999999999999999999 7999999998732 3467999
Q ss_pred cCCCCcccccchHHHHHHHHhcC----------------CCccCc-ccccccc----CccCCceeecCCccEEEEeccee
Q 038045 110 NFDDPRLTDYDTLLENVRDLREG----------------KPVQVP-IYDFESS----SRTGYRTVEVPSSRIVIIEGIYA 168 (621)
Q Consensus 110 vfQdp~l~d~~tV~enL~~L~~g----------------k~V~~p-~yd~~~~----~rsggq~qrVa~ArVLIvEG~lL 168 (621)
+.|+|.+|+ .|+++|+...... +.+..| ..|...+ .+||||.||++.+|+++-.+.++
T Consensus 400 v~Q~p~lf~-gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~ 478 (559)
T COG4988 400 VSQNPYLFA-GTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLL 478 (559)
T ss_pred eCCCCcccc-ccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEE
Confidence 999998774 6889998654321 111211 2343333 47999999999999999999999
Q ss_pred ccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEE
Q 038045 169 LSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIY 245 (621)
Q Consensus 169 LlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIY 245 (621)
+.|||+..+|. +....+......+.+ ++|+..++|+..... -+|++.+++.|.+.+.+.+.+.+
T Consensus 479 llDEpTA~LD~-------etE~~i~~~l~~l~~-~ktvl~itHrl~~~~-----~~D~I~vld~G~l~~~g~~~~L~ 542 (559)
T COG4988 479 LLDEPTAHLDA-------ETEQIILQALQELAK-QKTVLVITHRLEDAA-----DADRIVVLDNGRLVEQGTHEELS 542 (559)
T ss_pred EecCCccCCCH-------hHHHHHHHHHHHHHh-CCeEEEEEcChHHHh-----cCCEEEEecCCceeccCCHHHHh
Confidence 99999999997 233444444444433 589999999998775 35777889999999999988875
No 316
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=99.77 E-value=1.4e-18 Score=171.41 Aligned_cols=176 Identities=35% Similarity=0.622 Sum_probs=143.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHhhCC--CeeEEEECCcccc------cccccccCCCCcccccchHHHHHHHHhcCCCccC
Q 038045 66 ILIGLAGPSGAGKTIFTEKILNFMP--SIAVISMDNYNDS------SRVVDGNFDDPRLTDYDTLLENVRDLREGKPVQV 137 (621)
Q Consensus 66 iIVGI~GpSGSGKSTLlr~LagLlP--~sGvI~lDg~~~~------~R~Ig~vfQdp~l~d~~tV~enL~~L~~gk~V~~ 137 (621)
.+|||+||||||||||++.|+++++ ..+.+++|+|+.. ....+++|++|..++...+.+.|..+..++.+..
T Consensus 7 ~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~v~~ 86 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLEMAERKKTNFDHPDAFDNDLLYEHLKNLKNGSPIDV 86 (207)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhhCCHHHhcCCCCCCccHhHHHHHHHHHHHHHCCCCEec
Confidence 3999999999999999999999984 6789999998532 2346788999999999999999999999999999
Q ss_pred ccccccccCccCCceeecCCccEEEEecceeccc-cccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHH
Q 038045 138 PIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSE-KLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISET 216 (621)
Q Consensus 138 p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlD-Ep~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea 216 (621)
|.|++..+.+.. +...+....++|+||.+++.+ .....+|..||++++.+.++.|++.|+...+|.+...+.+.|...
T Consensus 87 p~yd~~~~~~~~-~~~~~~~~~~vIieG~~~~~~~~~~~~~d~~I~v~~~~~~~l~R~~~R~~~~rg~~~~~~~~~~~~~ 165 (207)
T TIGR00235 87 PVYDYVNHTRPK-ETVHIEPKDVVILEGIMPLFDERLRDLMDLKIFVDTPLDIRLIRRIERDINERGRSLDSVIDQYRKT 165 (207)
T ss_pred ccceeecCCCCC-ceEEeCCCCEEEEEehhhhchHhHHHhCCEEEEEECChhHHHHHHHHHHHHhhCCCHHHHHHHHHHh
Confidence 999998766643 344567789999999988764 466799999999999999999999999988899988887776654
Q ss_pred hccccccchhhhcCCCCceeeccCceeEEecCCCCCc
Q 038045 217 SAKNLSVDQIKAVYPEGHTETMEQTYDIYLLPPGEDP 253 (621)
Q Consensus 217 ~~R~v~~~d~iavl~eg~Ie~~~~~aDIYi~P~~~~~ 253 (621)
. . ..+..++.+....+|++ ++.+...
T Consensus 166 ~----~------~~~~~~i~~~~~~Ad~v-i~~~~~~ 191 (207)
T TIGR00235 166 V----R------PMYEQFVEPTKQYADLI-IPEGGRN 191 (207)
T ss_pred h----h------hhHHHhCcccccccEEE-EcCCCCc
Confidence 3 1 24445677888899984 4555443
No 317
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.77 E-value=2.6e-19 Score=197.48 Aligned_cols=187 Identities=11% Similarity=0.052 Sum_probs=140.0
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhCC--CeeEEEECCccc--------cccc
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFMP--SIAVISMDNYND--------SSRV 106 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP--~sGvI~lDg~~~--------~~R~ 106 (621)
...+++++.++...+++++||.+++|+ ++||+||||||||||+++|+|+.| ..|.|.++|... .++.
T Consensus 261 l~~~~l~~~~~~~~il~~vsl~i~~Ge---~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 337 (490)
T PRK10938 261 IVLNNGVVSYNDRPILHNLSWQVNPGE---HWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKH 337 (490)
T ss_pred EEEeceEEEECCeeEEeeceEEEcCCC---EEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhh
Confidence 457788888888889999999999999 999999999999999999999874 589999998531 1246
Q ss_pred ccccCCCCccccc--chHHHHHHHHh-c------C-------------CCccCc--cccccccCccCCceeecCCccEEE
Q 038045 107 VDGNFDDPRLTDY--DTLLENVRDLR-E------G-------------KPVQVP--IYDFESSSRTGYRTVEVPSSRIVI 162 (621)
Q Consensus 107 Ig~vfQdp~l~d~--~tV~enL~~L~-~------g-------------k~V~~p--~yd~~~~~rsggq~qrVa~ArVLI 162 (621)
++|++|++.++.. .++.+++.... . . +.+.+. ..+.....+|+|+++++..+++++
T Consensus 338 i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~ 417 (490)
T PRK10938 338 IGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALV 417 (490)
T ss_pred ceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHh
Confidence 8999998765332 35555543210 0 0 011222 224455789999999999999999
Q ss_pred EecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCC-CceehHhHHHHHhccccc-cchhhhcCCCCceee
Q 038045 163 IEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQ-EPEEIIQQISETSAKNLS-VDQIKAVYPEGHTET 237 (621)
Q Consensus 163 vEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~-Ti~~VtHd~eea~~R~v~-~~d~iavl~eg~Ie~ 237 (621)
.+|.++++|||++.||+. ..+.+.++.+.+.+.|. |++.++|+++.+. . .+|++.++++|.+..
T Consensus 418 ~~p~lllLDEPt~gLD~~-------~~~~l~~~L~~l~~~~~~tviivsHd~~~~~----~~~~d~v~~l~~G~i~~ 483 (490)
T PRK10938 418 KHPTLLILDEPLQGLDPL-------NRQLVRRFVDVLISEGETQLLFVSHHAEDAP----ACITHRLEFVPDGDIYR 483 (490)
T ss_pred cCCCEEEEcCccccCCHH-------HHHHHHHHHHHHHhcCCcEEEEEecchhhhh----hhhheeEEEecCCceEE
Confidence 999999999999999973 23455555555555554 6999999998775 4 467777888876543
No 318
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.77 E-value=6.3e-19 Score=201.46 Aligned_cols=194 Identities=13% Similarity=0.120 Sum_probs=154.7
Q ss_pred eeecceeeeeC----cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc--------
Q 038045 37 PIQDPLSFEKG----FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS-------- 103 (621)
Q Consensus 37 ~v~~~lsf~~G----~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~-------- 103 (621)
...+++++.++ ...+++++||++++|+ +++|+||||||||||+++|+|++ |+.|.|.+||....
T Consensus 5 l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~ 81 (648)
T PRK10535 5 LELKDIRRSYPSGEEQVEVLKGISLDIYAGE---MVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALA 81 (648)
T ss_pred EEEeeEEEEeCCCCCCeeeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHH
Confidence 34677777764 2579999999999999 99999999999999999999999 89999999997421
Q ss_pred ---cccccccCCCCcccccchHHHHHHHHhc--CC--------------CccC-ccccccccCccCCceeecCCccEEEE
Q 038045 104 ---SRVVDGNFDDPRLTDYDTLLENVRDLRE--GK--------------PVQV-PIYDFESSSRTGYRTVEVPSSRIVII 163 (621)
Q Consensus 104 ---~R~Ig~vfQdp~l~d~~tV~enL~~L~~--gk--------------~V~~-p~yd~~~~~rsggq~qrVa~ArVLIv 163 (621)
++.++|+||++.+|+..++.+|+..... +. ...+ ...+.....+|+|+++++..+++++.
T Consensus 82 ~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~ 161 (648)
T PRK10535 82 QLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMN 161 (648)
T ss_pred HHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 2468999999999999999999875321 10 0111 12344567889999999999999999
Q ss_pred ecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCcee
Q 038045 164 EGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYD 243 (621)
Q Consensus 164 EG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aD 243 (621)
+|.++++|||+..||.. ..+.+.++.+.+.+.|.|+..++|+.+... .+|++.+++++.+.+.+...+
T Consensus 162 ~P~lLllDEP~~gLD~~-------s~~~l~~ll~~l~~~g~tilivsH~~~~~~-----~~d~i~~l~~G~i~~~g~~~~ 229 (648)
T PRK10535 162 GGQVILADEPTGALDSH-------SGEEVMAILHQLRDRGHTVIIVTHDPQVAA-----QAERVIEIRDGEIVRNPPAQE 229 (648)
T ss_pred CCCEEEEECCCCCCCHH-------HHHHHHHHHHHHHhcCCEEEEECCCHHHHH-----hCCEEEEEECCEEEeecCccc
Confidence 99999999999999973 234555555555567999999999988653 378888999999988887777
Q ss_pred EE
Q 038045 244 IY 245 (621)
Q Consensus 244 IY 245 (621)
++
T Consensus 230 ~~ 231 (648)
T PRK10535 230 KV 231 (648)
T ss_pred cc
Confidence 64
No 319
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.77 E-value=1.4e-19 Score=202.21 Aligned_cols=192 Identities=18% Similarity=0.212 Sum_probs=146.5
Q ss_pred eeecceeeeeC--cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcc-------ccccc
Q 038045 37 PIQDPLSFEKG--FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYN-------DSSRV 106 (621)
Q Consensus 37 ~v~~~lsf~~G--~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~-------~~~R~ 106 (621)
...++++|.|. ...+++++||.+++|+ .++|+|+||||||||++.|+|++ |..|.|.+||.. ..++.
T Consensus 331 i~~~~v~f~y~~~~~~il~~inl~i~~G~---~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~ 407 (571)
T TIGR02203 331 VEFRNVTFRYPGRDRPALDSISLVIEPGE---TVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQ 407 (571)
T ss_pred EEEEEEEEEcCCCCCccccCeeEEecCCC---EEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhh
Confidence 55778888874 3579999999999999 99999999999999999999999 999999999863 22356
Q ss_pred ccccCCCCcccccchHHHHHHHHhc-CC----------Cc-------cCc-ccccc----ccCccCCceeecCCccEEEE
Q 038045 107 VDGNFDDPRLTDYDTLLENVRDLRE-GK----------PV-------QVP-IYDFE----SSSRTGYRTVEVPSSRIVII 163 (621)
Q Consensus 107 Ig~vfQdp~l~d~~tV~enL~~L~~-gk----------~V-------~~p-~yd~~----~~~rsggq~qrVa~ArVLIv 163 (621)
++|++|+|.+|+ .|+++||..... .. .+ ..| .+|.. -..+||||+|+++.+|+++-
T Consensus 408 i~~v~Q~~~lf~-~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~ 486 (571)
T TIGR02203 408 VALVSQDVVLFN-DTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLK 486 (571)
T ss_pred ceEEccCccccc-ccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence 999999998885 599999975431 10 00 111 12322 23579999999999999999
Q ss_pred ecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCcee
Q 038045 164 EGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYD 243 (621)
Q Consensus 164 EG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aD 243 (621)
++.++++|||++.+|.. . .+.+.+..+.. ..++|++.|+|+.... ..+|.+.++.+|.+...++..+
T Consensus 487 ~~~illLDEpts~LD~~------~-~~~i~~~L~~~-~~~~tiIiitH~~~~~-----~~~D~ii~l~~g~i~~~g~~~~ 553 (571)
T TIGR02203 487 DAPILILDEATSALDNE------S-ERLVQAALERL-MQGRTTLVIAHRLSTI-----EKADRIVVMDDGRIVERGTHNE 553 (571)
T ss_pred CCCEEEEeCccccCCHH------H-HHHHHHHHHHH-hCCCEEEEEehhhHHH-----HhCCEEEEEeCCEEEeeCCHHH
Confidence 99999999999999972 2 22233333332 3478999999998554 4567777788888887777776
Q ss_pred EE
Q 038045 244 IY 245 (621)
Q Consensus 244 IY 245 (621)
++
T Consensus 554 l~ 555 (571)
T TIGR02203 554 LL 555 (571)
T ss_pred HH
Confidence 63
No 320
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.77 E-value=2.6e-19 Score=200.30 Aligned_cols=194 Identities=14% Similarity=0.089 Sum_probs=139.0
Q ss_pred eeecceeeeeC-cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-------ccccc
Q 038045 37 PIQDPLSFEKG-FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-------SSRVV 107 (621)
Q Consensus 37 ~v~~~lsf~~G-~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-------~~R~I 107 (621)
...++++|.|. ...+|+++||++++|+ .++|+||||||||||++.|+|++ |..|.|.+||... .++.+
T Consensus 323 i~~~~v~f~y~~~~~~l~~i~~~i~~G~---~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 399 (547)
T PRK10522 323 LELRNVTFAYQDNGFSVGPINLTIKRGE---LLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLF 399 (547)
T ss_pred EEEEEEEEEeCCCCeEEecceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhhe
Confidence 45778888875 3569999999999999 99999999999999999999999 9999999999742 23578
Q ss_pred cccCCCCcccccchHHHH--------HHH-Hh---cCCCccCccccccccCccCCceeecCCccEEEEecceeccccccC
Q 038045 108 DGNFDDPRLTDYDTLLEN--------VRD-LR---EGKPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRP 175 (621)
Q Consensus 108 g~vfQdp~l~d~~tV~en--------L~~-L~---~gk~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s 175 (621)
++++|++.+|+. ++.+| +.. +. .+..+..+.-...-..+||||+|+++.+|+++-+|.++++|||++
T Consensus 400 ~~v~q~~~lf~~-ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts 478 (547)
T PRK10522 400 SAVFTDFHLFDQ-LLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAA 478 (547)
T ss_pred EEEecChhHHHH-hhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 999999987653 33332 111 11 111111110000124689999999999999999999999999999
Q ss_pred CCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeec-cCceeEE
Q 038045 176 LLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETM-EQTYDIY 245 (621)
Q Consensus 176 ~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~-~~~aDIY 245 (621)
.+|.. .+..+.+.+.+..+..|.|++.|+|+.+.. ..+|++.++++|.+... +.-.|.|
T Consensus 479 ~LD~~------~~~~i~~~l~~~~~~~~~tvi~itH~~~~~-----~~~d~i~~l~~G~i~e~~~~~~~~~ 538 (547)
T PRK10522 479 DQDPH------FRREFYQVLLPLLQEMGKTIFAISHDDHYF-----IHADRLLEMRNGQLSELTGEERDAA 538 (547)
T ss_pred CCCHH------HHHHHHHHHHHHHHhCCCEEEEEEechHHH-----HhCCEEEEEECCEEEEecCCchhhh
Confidence 99973 122233334333334589999999997543 45777788888876543 3444444
No 321
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=3.7e-19 Score=203.05 Aligned_cols=179 Identities=16% Similarity=0.091 Sum_probs=136.6
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccccccccccCCCC-
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDSSRVVDGNFDDP- 114 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~~R~Ig~vfQdp- 114 (621)
...+++++.++...+|+++||.+.+|+ ++||+||||||||||+++|+|++ |+.|.|.+++. ..++|++|++
T Consensus 313 l~~~~l~~~y~~~~il~~isl~i~~Ge---~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----~~igy~~Q~~~ 385 (638)
T PRK10636 313 LKMEKVSAGYGDRIILDSIKLNLVPGS---RIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG----IKLGYFAQHQL 385 (638)
T ss_pred EEEEeeEEEeCCeeeeccceEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC----EEEEEecCcch
Confidence 457789999888899999999999999 99999999999999999999999 89999999742 3688999974
Q ss_pred -cccccchHHHHHHHHhcC----------CCccCc--cccccccCccCCceeecCCccEEEEecceeccccccCCCCeeE
Q 038045 115 -RLTDYDTLLENVRDLREG----------KPVQVP--IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRV 181 (621)
Q Consensus 115 -~l~d~~tV~enL~~L~~g----------k~V~~p--~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV 181 (621)
.+.+..++.+++...... ..+.++ ..+.....+|||+++++..+++++.+|.++++|||++.||+.
T Consensus 386 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~- 464 (638)
T PRK10636 386 EFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLD- 464 (638)
T ss_pred hhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHH-
Confidence 234455666665322110 011221 234456789999999999999999999999999999999972
Q ss_pred EecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCcee
Q 038045 182 SVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTE 236 (621)
Q Consensus 182 ~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie 236 (621)
....+..+.+ +.+.|++.|+|+..... .++|++.++.+|.+.
T Consensus 465 ------~~~~l~~~L~---~~~gtvi~vSHd~~~~~----~~~d~i~~l~~G~i~ 506 (638)
T PRK10636 465 ------MRQALTEALI---DFEGALVVVSHDRHLLR----STTDDLYLVHDGKVE 506 (638)
T ss_pred ------HHHHHHHHHH---HcCCeEEEEeCCHHHHH----HhCCEEEEEECCEEE
Confidence 2233333333 33459999999998776 667777777777664
No 322
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.77 E-value=2.5e-19 Score=205.66 Aligned_cols=191 Identities=17% Similarity=0.255 Sum_probs=148.6
Q ss_pred eeecceeeeeC--cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-------cccc
Q 038045 37 PIQDPLSFEKG--FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-------SSRV 106 (621)
Q Consensus 37 ~v~~~lsf~~G--~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-------~~R~ 106 (621)
...++++|.|+ ...+++++||.+++|+ .++|+|+||||||||+++|+|++ |..|.|.+||... .++.
T Consensus 456 i~~~~vsf~y~~~~~~il~~i~l~i~~G~---~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~ 532 (694)
T TIGR01846 456 ITFENIRFRYAPDSPEVLSNLNLDIKPGE---FIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQ 532 (694)
T ss_pred EEEEEEEEEcCCCCccccccceEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHh
Confidence 45678899874 3569999999999999 99999999999999999999999 9999999999732 2357
Q ss_pred ccccCCCCcccccchHHHHHHHHhcCC----------Cc-------cCc-cccc----cccCccCCceeecCCccEEEEe
Q 038045 107 VDGNFDDPRLTDYDTLLENVRDLREGK----------PV-------QVP-IYDF----ESSSRTGYRTVEVPSSRIVIIE 164 (621)
Q Consensus 107 Ig~vfQdp~l~d~~tV~enL~~L~~gk----------~V-------~~p-~yd~----~~~~rsggq~qrVa~ArVLIvE 164 (621)
++|++|++.+|+ .|+++|+....... .. ..| .++. ....+||||+|+++.+|+++-+
T Consensus 533 i~~v~q~~~lf~-~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~ 611 (694)
T TIGR01846 533 MGVVLQENVLFS-RSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGN 611 (694)
T ss_pred CeEEccCCeehh-hhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhC
Confidence 999999998886 69999997532110 00 112 1222 2346899999999999999999
Q ss_pred cceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 165 GIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 165 G~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
|.++++|||++.+|.. ..+.+.+..+.+ ..+.|++.++|+..... .+|++.++++|.+...+++.++
T Consensus 612 ~~ililDEpts~LD~~-------~~~~i~~~l~~~-~~~~t~i~itH~~~~~~-----~~d~ii~l~~G~i~~~g~~~~l 678 (694)
T TIGR01846 612 PRILIFDEATSALDYE-------SEALIMRNMREI-CRGRTVIIIAHRLSTVR-----ACDRIIVLEKGQIAESGRHEEL 678 (694)
T ss_pred CCEEEEECCCcCCCHH-------HHHHHHHHHHHH-hCCCEEEEEeCChHHHH-----hCCEEEEEeCCEEEEeCCHHHH
Confidence 9999999999999972 223333333333 35899999999987653 4788888999999888777665
No 323
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.77 E-value=3.1e-18 Score=168.64 Aligned_cols=176 Identities=34% Similarity=0.604 Sum_probs=145.6
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhhC--CCeeEEEECCccccc------ccccccCCCCcccccchHHHHHHHHhcCCCc
Q 038045 64 GIILIGLAGPSGAGKTIFTEKILNFM--PSIAVISMDNYNDSS------RVVDGNFDDPRLTDYDTLLENVRDLREGKPV 135 (621)
Q Consensus 64 ~~iIVGI~GpSGSGKSTLlr~LagLl--P~sGvI~lDg~~~~~------R~Ig~vfQdp~l~d~~tV~enL~~L~~gk~V 135 (621)
++.+|||+|+||||||||++.|++.+ .....|++|+|+... ....+.|++|..++...+.+.|..++.+..+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~v 84 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSHLSFEERVKTNYDHPDAFDHDLLIEHLKALKAGKAI 84 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCcccCCHHHhcccCccCcccccHHHHHHHHHHHHcCCcc
Confidence 45699999999999999999999998 456788999985432 1245678889899999999999999998899
Q ss_pred cCccccccccCccCCceeecCCccEEEEecceecc-ccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHH
Q 038045 136 QVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALS-EKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQIS 214 (621)
Q Consensus 136 ~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLl-DEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~e 214 (621)
..|.|++..+.+.. +...+....++|+||.+++. +++.+.+|.++|++++.+.++.|++.|+...+|.+.+.+.++|.
T Consensus 85 ~~p~~d~~~~~~~~-~~~~~~~~~~vivEg~~l~~~~~~~~~~d~~I~v~~~~~~~~~R~~~Rd~~~rg~~~e~~~~~~~ 163 (209)
T PRK05480 85 EIPVYDYTEHTRSK-ETIRVEPKDVIILEGILLLEDERLRDLMDIKIFVDTPLDIRLIRRLKRDVNERGRSLESVINQYL 163 (209)
T ss_pred ccCcccccccccCC-CeEEeCCCCEEEEEeehhcCchhHhhhhceeEEEeCChhHHHHHHHhhcchhcCCCHHHHHHHHH
Confidence 99999998876654 34456677899999999987 58889999999999999999999999998889999999988877
Q ss_pred HHhccccccchhhhcCCCCceeeccCceeEEecCCCC
Q 038045 215 ETSAKNLSVDQIKAVYPEGHTETMEQTYDIYLLPPGE 251 (621)
Q Consensus 215 ea~~R~v~~~d~iavl~eg~Ie~~~~~aDIYi~P~~~ 251 (621)
... . +.+..++++....+|+ +++.+.
T Consensus 164 ~~~----~------~~~~~~i~~~~~~AD~-vI~~~~ 189 (209)
T PRK05480 164 STV----R------PMHLQFIEPSKRYADI-IIPEGG 189 (209)
T ss_pred Hhh----h------hhHHhhccHhhcceeE-EecCCC
Confidence 664 2 3556678888899998 455554
No 324
>PRK13409 putative ATPase RIL; Provisional
Probab=99.77 E-value=4.7e-19 Score=200.62 Aligned_cols=175 Identities=16% Similarity=0.182 Sum_probs=139.9
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccccccccccCCCCc
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDSSRVVDGNFDDPR 115 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~~R~Ig~vfQdp~ 115 (621)
...+++++.++.+ .|++++|++.+|+ ++||+||||||||||+++|+|++ |+.|.|.++ ..++|++|++.
T Consensus 341 l~~~~ls~~~~~~-~l~~~s~~i~~Ge---iv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~------~~i~y~~Q~~~ 410 (590)
T PRK13409 341 VEYPDLTKKLGDF-SLEVEGGEIYEGE---VIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE------LKISYKPQYIK 410 (590)
T ss_pred EEEcceEEEECCE-EEEecceEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe------eeEEEeccccc
Confidence 4567788888765 4999999999999 99999999999999999999999 899999886 25899999988
Q ss_pred ccccchHHHHHHHHhcCC-----------CccC-ccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEe
Q 038045 116 LTDYDTLLENVRDLREGK-----------PVQV-PIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSV 183 (621)
Q Consensus 116 l~d~~tV~enL~~L~~gk-----------~V~~-p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~V 183 (621)
.++..|+.+++....... .+.+ ...+.....+|||++|+++.+++++.+|.++++|||++.||+.
T Consensus 411 ~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~--- 487 (590)
T PRK13409 411 PDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVE--- 487 (590)
T ss_pred CCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH---
Confidence 888899999987642110 1111 1245567889999999999999999999999999999999973
Q ss_pred cCCchHHHHHHHHHHH-HHcCCCceehHhHHHHHhccccccchhhhcCCC
Q 038045 184 TGGVHFDLVKRVLRDI-QRVGQEPEEIIQQISETSAKNLSVDQIKAVYPE 232 (621)
Q Consensus 184 d~~~d~~LirRI~Rdl-~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~e 232 (621)
....+.++.+.+ .+.|.|++.++|+++.+. .++|++.+++.
T Consensus 488 ----~~~~l~~~l~~l~~~~g~tviivsHD~~~~~----~~aDrvivl~~ 529 (590)
T PRK13409 488 ----QRLAVAKAIRRIAEEREATALVVDHDIYMID----YISDRLMVFEG 529 (590)
T ss_pred ----HHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH----HhCCEEEEEcC
Confidence 234444555554 445899999999998886 56677666654
No 325
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=3.3e-19 Score=195.64 Aligned_cols=191 Identities=16% Similarity=0.200 Sum_probs=151.9
Q ss_pred eeecceeeeeCcEE-EEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccc-------cccccc
Q 038045 37 PIQDPLSFEKGFFV-VIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNYND-------SSRVVD 108 (621)
Q Consensus 37 ~v~~~lsf~~G~~~-~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~~~-------~~R~Ig 108 (621)
...++++|.+|... +|+++||+|++|+ -|||+|+|||||||++|+|..++..+|.|.+||..- .++.+|
T Consensus 352 I~F~dV~f~y~~k~~iL~gvsf~I~kGe---kVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig 428 (591)
T KOG0057|consen 352 IEFDDVHFSYGPKRKVLKGVSFTIPKGE---KVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIG 428 (591)
T ss_pred EEEEeeEEEeCCCCceecceeEEecCCC---EEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhhee
Confidence 67889999999887 9999999999999 799999999999999999999998899999999732 245699
Q ss_pred ccCCCCcccccchHHHHHHHHhcCC------------C-----ccCc-cccccc----cCccCCceeecCCccEEEEecc
Q 038045 109 GNFDDPRLTDYDTLLENVRDLREGK------------P-----VQVP-IYDFES----SSRTGYRTVEVPSSRIVIIEGI 166 (621)
Q Consensus 109 ~vfQdp~l~d~~tV~enL~~L~~gk------------~-----V~~p-~yd~~~----~~rsggq~qrVa~ArVLIvEG~ 166 (621)
++||+--+|+ +|+..||.+..... . ..+| .|.-.. ..+||||+|+++.+|+++-++.
T Consensus 429 ~VPQd~~LFn-dTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~ 507 (591)
T KOG0057|consen 429 VVPQDSVLFN-DTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAP 507 (591)
T ss_pred EeCCcccccc-hhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCC
Confidence 9999988875 78999998643210 0 0111 233222 3568999999999999999999
Q ss_pred eeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 167 YALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 167 lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
++++||+++.||-. .+.++++-+.. ...|+|.+.|.|+..... -+|.+.+++.|.+...+++.+.
T Consensus 508 Il~~DEaTS~LD~~------TE~~i~~~i~~--~~~~rTvI~IvH~l~ll~-----~~DkI~~l~nG~v~e~gth~el 572 (591)
T KOG0057|consen 508 ILLLDEATSALDSE------TEREILDMIMD--VMSGRTVIMIVHRLDLLK-----DFDKIIVLDNGTVKEYGTHSEL 572 (591)
T ss_pred eEEecCcccccchh------hHHHHHHHHHH--hcCCCeEEEEEecchhHh-----cCCEEEEEECCeeEEeccHHHH
Confidence 99999999999962 33444444443 456999999999987663 4566777888888888887776
No 326
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.76 E-value=3.5e-19 Score=218.67 Aligned_cols=192 Identities=16% Similarity=0.227 Sum_probs=149.9
Q ss_pred eeecceeeeeC---cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-C----------------------
Q 038045 37 PIQDPLSFEKG---FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-P---------------------- 90 (621)
Q Consensus 37 ~v~~~lsf~~G---~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P---------------------- 90 (621)
...++++|.|. ...+|+++||++++|+ .+||+||||||||||++.|.+++ |
T Consensus 1166 I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~---~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~ 1242 (1466)
T PTZ00265 1166 IEIMDVNFRYISRPNVPIYKDLTFSCDSKK---TTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDY 1242 (1466)
T ss_pred EEEEEEEEECCCCCCCccccCeeEEEcCCC---EEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccc
Confidence 55788999884 3579999999999999 99999999999999999999999 7
Q ss_pred --------------------------------CeeEEEECCcc-------cccccccccCCCCcccccchHHHHHHHHhc
Q 038045 91 --------------------------------SIAVISMDNYN-------DSSRVVDGNFDDPRLTDYDTLLENVRDLRE 131 (621)
Q Consensus 91 --------------------------------~sGvI~lDg~~-------~~~R~Ig~vfQdp~l~d~~tV~enL~~L~~ 131 (621)
..|.|.+||.. ..++.++||+|+|.+| ..|+++||.+...
T Consensus 1243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF-~gTIreNI~~g~~ 1321 (1466)
T PTZ00265 1243 QGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLF-NMSIYENIKFGKE 1321 (1466)
T ss_pred ccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccc-cccHHHHHhcCCC
Confidence 58999999973 2246799999999998 4899999987532
Q ss_pred CC---C--------------ccCc-cccccc----cCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchH
Q 038045 132 GK---P--------------VQVP-IYDFES----SSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHF 189 (621)
Q Consensus 132 gk---~--------------V~~p-~yd~~~----~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~ 189 (621)
.. . ..+| .||-.. ..+||||+||+++||+++-+|.++++||+++.||. ...
T Consensus 1322 ~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~-------~sE 1394 (1466)
T PTZ00265 1322 DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDS-------NSE 1394 (1466)
T ss_pred CCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCH-------HHH
Confidence 10 0 0112 244332 35899999999999999999999999999999996 223
Q ss_pred HHHHHHHHHHH-HcCCCceehHhHHHHHhccccccchhhhcCCC----Cc-eeeccCceeE
Q 038045 190 DLVKRVLRDIQ-RVGQEPEEIIQQISETSAKNLSVDQIKAVYPE----GH-TETMEQTYDI 244 (621)
Q Consensus 190 ~LirRI~Rdl~-erG~Ti~~VtHd~eea~~R~v~~~d~iavl~e----g~-Ie~~~~~aDI 244 (621)
+.+.+..+... ..++|++.|+|++... ..+|++.++++ |. +...+++.++
T Consensus 1395 ~~I~~~L~~~~~~~~~TvIiIaHRlsti-----~~aD~Ivvl~~~~~~G~iv~e~Gth~eL 1450 (1466)
T PTZ00265 1395 KLIEKTIVDIKDKADKTIITIAHRIASI-----KRSDKIVVFNNPDRTGSFVQAHGTHEEL 1450 (1466)
T ss_pred HHHHHHHHHHhccCCCEEEEEechHHHH-----HhCCEEEEEeCCCCCCCEEEEecCHHHH
Confidence 34444444433 3589999999999665 45788888887 76 4467777765
No 327
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.76 E-value=2.1e-19 Score=186.52 Aligned_cols=184 Identities=15% Similarity=0.147 Sum_probs=139.6
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccccccccccCCCCc
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDSSRVVDGNFDDPR 115 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~~R~Ig~vfQdp~ 115 (621)
...+++++. ...+|+++||.+++|+ ++||+|+||||||||+++|+|++ |..|.|.++| .++|++|++.
T Consensus 40 l~i~nls~~--~~~vL~~vs~~i~~Ge---~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g------~i~yv~q~~~ 108 (282)
T cd03291 40 LFFSNLCLV--GAPVLKNINLKIEKGE---MLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------RISFSSQFSW 108 (282)
T ss_pred EEEEEEEEe--cccceeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------EEEEEeCccc
Confidence 356677774 3569999999999999 99999999999999999999998 8999999987 4899999988
Q ss_pred ccccchHHHHHHHHhc-CC--------CccC-------c-----cccccccCccCCceeecCCccEEEEecceecccccc
Q 038045 116 LTDYDTLLENVRDLRE-GK--------PVQV-------P-----IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLR 174 (621)
Q Consensus 116 l~d~~tV~enL~~L~~-gk--------~V~~-------p-----~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~ 174 (621)
+++. ++.+|+.+... .. ...+ + ..+.....+|+|+++++..+++++.+|.++++|||+
T Consensus 109 l~~~-tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt 187 (282)
T cd03291 109 IMPG-TIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF 187 (282)
T ss_pred cccc-CHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 7774 89988765211 00 0000 0 011123578999999999999999999999999999
Q ss_pred CCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 175 PLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 175 s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
+.||+.. ...+...+.+.+. .+.|++.++|++.... .+|++.++.+|.+...+...++
T Consensus 188 ~gLD~~~------~~~l~~~ll~~~~-~~~tIiiisH~~~~~~-----~~d~i~~l~~G~i~~~g~~~~~ 245 (282)
T cd03291 188 GYLDVFT------EKEIFESCVCKLM-ANKTRILVTSKMEHLK-----KADKILILHEGSSYFYGTFSEL 245 (282)
T ss_pred ccCCHHH------HHHHHHHHHHHhh-CCCEEEEEeCChHHHH-----hCCEEEEEECCEEEEECCHHHH
Confidence 9999731 1122233333333 4789999999988753 4788888999988776666665
No 328
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.76 E-value=3.6e-19 Score=177.45 Aligned_cols=172 Identities=17% Similarity=0.194 Sum_probs=129.0
Q ss_pred eEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc--ccccccccCCCCcccc--cchHHHHHHHHhc
Q 038045 57 LLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND--SSRVVDGNFDDPRLTD--YDTLLENVRDLRE 131 (621)
Q Consensus 57 L~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~--~~R~Ig~vfQdp~l~d--~~tV~enL~~L~~ 131 (621)
|++++|+ ++||+|+||||||||+++|+|+. |..|.|.+||... ..+.++|+||++.++. ..++.+++.....
T Consensus 1 l~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~ 77 (223)
T TIGR03771 1 LSADKGE---LLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRT 77 (223)
T ss_pred CccCCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccc
Confidence 4578999 99999999999999999999998 8999999999642 2356899999987643 3688888764210
Q ss_pred --------CC------------CccC-ccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchHH
Q 038045 132 --------GK------------PVQV-PIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFD 190 (621)
Q Consensus 132 --------gk------------~V~~-p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~ 190 (621)
.. .+.+ +..+.....+|+|+++++..+++++.+|.++++|||+..||+. ..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~-------~~~ 150 (223)
T TIGR03771 78 GHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMP-------TQE 150 (223)
T ss_pred cccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH-------HHH
Confidence 00 0111 1223345678999999999999999999999999999999973 234
Q ss_pred HHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCcee
Q 038045 191 LVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYD 243 (621)
Q Consensus 191 LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aD 243 (621)
.+.++.+.+.+.|.|++.++|+.+... ..+|++.++ +|.+...+...+
T Consensus 151 ~l~~~l~~~~~~~~tvii~sH~~~~~~----~~~d~i~~l-~G~i~~~~~~~~ 198 (223)
T TIGR03771 151 LLTELFIELAGAGTAILMTTHDLAQAM----ATCDRVVLL-NGRVIADGTPQQ 198 (223)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHH----HhCCEEEEE-CCEEEeecCHHH
Confidence 555555555567999999999998776 556666666 576655444444
No 329
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.76 E-value=4.2e-19 Score=197.28 Aligned_cols=168 Identities=18% Similarity=0.220 Sum_probs=130.5
Q ss_pred eeecceeeeeCc--EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-------cccc
Q 038045 37 PIQDPLSFEKGF--FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-------SSRV 106 (621)
Q Consensus 37 ~v~~~lsf~~G~--~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-------~~R~ 106 (621)
...++++|.|.. ..+++++||++++|+ .++|+||||||||||++.|+|++ |..|.|.+||... .++.
T Consensus 321 i~~~~v~f~y~~~~~~il~~i~l~i~~G~---~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~ 397 (529)
T TIGR02857 321 LEFSGLSVAYPGRRAPALRPVSFTVPPGE---RVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQ 397 (529)
T ss_pred EEEEEEEEECCCCCcccccceeEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhh
Confidence 457788998864 469999999999999 99999999999999999999999 8999999999731 2357
Q ss_pred ccccCCCCcccccchHHHHHHHHhcC-C---------Ccc-------Cc-cccc----cccCccCCceeecCCccEEEEe
Q 038045 107 VDGNFDDPRLTDYDTLLENVRDLREG-K---------PVQ-------VP-IYDF----ESSSRTGYRTVEVPSSRIVIIE 164 (621)
Q Consensus 107 Ig~vfQdp~l~d~~tV~enL~~L~~g-k---------~V~-------~p-~yd~----~~~~rsggq~qrVa~ArVLIvE 164 (621)
++|++|+|.+|+ .|+++|+...... . ... .| .+|- ....+||||+||++.+|+++-+
T Consensus 398 i~~v~Q~~~lf~-~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~ 476 (529)
T TIGR02857 398 IAWVPQHPFLFA-GTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRD 476 (529)
T ss_pred eEEEcCCCcccC-cCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcC
Confidence 999999999986 6999999763211 0 000 11 1222 2346889999999999999999
Q ss_pred cceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHH
Q 038045 165 GIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISET 216 (621)
Q Consensus 165 G~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea 216 (621)
|.++++|||++.+|.. .+....+.+ +.+ ..++|++.|+|+....
T Consensus 477 ~~ililDE~ts~lD~~------~~~~i~~~l-~~~-~~~~t~i~itH~~~~~ 520 (529)
T TIGR02857 477 APLLLLDEPTAHLDAE------TEALVTEAL-RAL-AQGRTVLLVTHRLALA 520 (529)
T ss_pred CCEEEEeCcccccCHH------HHHHHHHHH-HHh-cCCCEEEEEecCHHHH
Confidence 9999999999999973 222233333 332 2589999999998665
No 330
>PRK15453 phosphoribulokinase; Provisional
Probab=99.76 E-value=3.9e-18 Score=176.76 Aligned_cols=172 Identities=17% Similarity=0.226 Sum_probs=138.9
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhhCC----CeeEEEECCcccccc-----------cccccCCC--CcccccchHHHHH
Q 038045 64 GIILIGLAGPSGAGKTIFTEKILNFMP----SIAVISMDNYNDSSR-----------VVDGNFDD--PRLTDYDTLLENV 126 (621)
Q Consensus 64 ~~iIVGI~GpSGSGKSTLlr~LagLlP----~sGvI~lDg~~~~~R-----------~Ig~vfQd--p~l~d~~tV~enL 126 (621)
+..+|||+|+|||||||+++.|+..+. ....|..|+|+...| .-+.+|++ |+++++..+.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~~~l 83 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELEQLF 83 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHHHHH
Confidence 346999999999999999999998772 356788999875321 12458888 9999999999999
Q ss_pred HHHhcCCCccCcccccc-----ccCccCCc---eeec-CCccEEEEecceecc----ccccCCCCeeEEecCCchHHHHH
Q 038045 127 RDLREGKPVQVPIYDFE-----SSSRTGYR---TVEV-PSSRIVIIEGIYALS----EKLRPLLDLRVSVTGGVHFDLVK 193 (621)
Q Consensus 127 ~~L~~gk~V~~p~yd~~-----~~~rsggq---~qrV-a~ArVLIvEG~lLLl----DEp~s~LDlkV~Vd~~~d~~Lir 193 (621)
..+++++....|.|++. .+.+..|. ...+ +.++++|+||.+.+. .+++..+|+++||+++.+++++|
T Consensus 84 ~~l~~~~~g~~~~Y~h~f~~a~~~~~~~gtft~~e~i~~p~dvIivEGLh~~~~~~~~~lr~~~DlkIfVdp~~dlr~ir 163 (290)
T PRK15453 84 REYGETGTGKTRKYLHTDDEAVPYNQVPGTFTPWEPLPEGTDLLFYEGLHGGVVTDQVDVAQHVDLLIGVVPIVNLEWIQ 163 (290)
T ss_pred HHHhcCCCcceeeccccccccccCCCCCCccCCceEecCCCcEEEEeccccccccccHHHHHhCCeeEeeCCcHhHHHHH
Confidence 99999888888877632 12333222 1233 568999999988764 35889999999999999999999
Q ss_pred HHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEEe
Q 038045 194 RVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIYL 246 (621)
Q Consensus 194 RI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIYi 246 (621)
|+.||..++|+|.+.|+++|...+ ..+..||.|+...+||.+
T Consensus 164 RI~RD~~ERGrs~EsVi~qilrrm-----------Pdy~~yI~PQ~~~tdInf 205 (290)
T PRK15453 164 KIHRDTSERGYSREAVMDTILRRM-----------PDYINYITPQFSRTHINF 205 (290)
T ss_pred HHHhhhHhhCCCHHHHHHHHHHhC-----------ChHhhhCCCCcccCcEEE
Confidence 999999999999999999998775 477789999999999954
No 331
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.76 E-value=3.7e-19 Score=176.74 Aligned_cols=171 Identities=13% Similarity=0.040 Sum_probs=128.3
Q ss_pred EEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEE-ECCcccccccccccCCCCcccccchHHHHHH
Q 038045 50 VVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVIS-MDNYNDSSRVVDGNFDDPRLTDYDTLLENVR 127 (621)
Q Consensus 50 ~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~-lDg~~~~~R~Ig~vfQdp~l~d~~tV~enL~ 127 (621)
++|+++||++++|+ ++||+||||||||||+++|+|+. |++|.|. +++... . +.+.+.+++.+++.+|+.
T Consensus 1 ~vl~~vs~~i~~Ge---~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~---~---~~~~~~l~~~ltv~enl~ 71 (213)
T PRK15177 1 VVLDKTDFVMGYHE---HIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL---P---LGANSFILPGLTGEENAR 71 (213)
T ss_pred CeeeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee---c---cccccccCCcCcHHHHHH
Confidence 37999999999999 99999999999999999999998 8999996 666421 1 223466788899999998
Q ss_pred HHhcCCCc-------------cCc-cccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchHHHHH
Q 038045 128 DLREGKPV-------------QVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVK 193 (621)
Q Consensus 128 ~L~~gk~V-------------~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~Lir 193 (621)
........ .++ .++......|+|++++++.+++++.+|.++++|||+..+|.. ....+.+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~------~~~~~~~ 145 (213)
T PRK15177 72 MMASLYGLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA------TQLRMQA 145 (213)
T ss_pred HHHHHcCCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH------HHHHHHH
Confidence 74321100 011 133445788999999999999999999999999999999963 1223333
Q ss_pred HHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCc
Q 038045 194 RVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQT 241 (621)
Q Consensus 194 RI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~ 241 (621)
.+.+.++ +.+++.++|++.... ..+|.+.++++|.+...++.
T Consensus 146 ~l~~~~~--~~~ii~vsH~~~~~~----~~~d~i~~l~~G~i~~~~~~ 187 (213)
T PRK15177 146 ALACQLQ--QKGLIVLTHNPRLIK----EHCHAFGVLLHGKITMCEDL 187 (213)
T ss_pred HHHHHhh--CCcEEEEECCHHHHH----HhcCeeEEEECCeEEEeCCH
Confidence 3444332 467999999998876 66777788888877654443
No 332
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.76 E-value=3.8e-19 Score=199.18 Aligned_cols=191 Identities=19% Similarity=0.267 Sum_probs=145.0
Q ss_pred eeecceeeeeCc---EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-------ccc
Q 038045 37 PIQDPLSFEKGF---FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-------SSR 105 (621)
Q Consensus 37 ~v~~~lsf~~G~---~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-------~~R 105 (621)
...++++|.|.. ..+|+++||++++|+ .++|+|+||||||||++.|+|++ |..|.|.+||... .++
T Consensus 338 i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge---~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~ 414 (576)
T TIGR02204 338 IEFEQVNFAYPARPDQPALDGLNLTVRPGE---TVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRA 414 (576)
T ss_pred EEEEEEEEECCCCCCCccccceeEEecCCC---EEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHH
Confidence 457788888743 579999999999999 99999999999999999999999 8999999999631 235
Q ss_pred cccccCCCCcccccchHHHHHHHHhcCC---C-------cc-------Cc-ccc----ccccCccCCceeecCCccEEEE
Q 038045 106 VVDGNFDDPRLTDYDTLLENVRDLREGK---P-------VQ-------VP-IYD----FESSSRTGYRTVEVPSSRIVII 163 (621)
Q Consensus 106 ~Ig~vfQdp~l~d~~tV~enL~~L~~gk---~-------V~-------~p-~yd----~~~~~rsggq~qrVa~ArVLIv 163 (621)
.++|++|+|.+|+ .|+++||....... . +. .| .++ .....+||||+|+++.+|+++-
T Consensus 415 ~i~~~~Q~~~lf~-~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~ 493 (576)
T TIGR02204 415 RMALVPQDPVLFA-ASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILK 493 (576)
T ss_pred hceEEccCCcccc-ccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHh
Confidence 7999999998874 58899987532110 0 00 11 112 1234578999999999999999
Q ss_pred ecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCcee
Q 038045 164 EGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYD 243 (621)
Q Consensus 164 EG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aD 243 (621)
++.++++|||++.+|.. ..+.+.+..+.+. .+.|++.|+|+..... .+|++.++.+|.+...+.+.+
T Consensus 494 ~~~ililDEpts~lD~~-------~~~~i~~~l~~~~-~~~t~IiitH~~~~~~-----~~d~vi~l~~g~~~~~g~~~~ 560 (576)
T TIGR02204 494 DAPILLLDEATSALDAE-------SEQLVQQALETLM-KGRTTLIIAHRLATVL-----KADRIVVMDQGRIVAQGTHAE 560 (576)
T ss_pred CCCeEEEeCcccccCHH-------HHHHHHHHHHHHh-CCCEEEEEecchHHHH-----hCCEEEEEECCEEEeeecHHH
Confidence 99999999999999973 1233333334432 4899999999986653 466677788888777666655
Q ss_pred E
Q 038045 244 I 244 (621)
Q Consensus 244 I 244 (621)
+
T Consensus 561 l 561 (576)
T TIGR02204 561 L 561 (576)
T ss_pred H
Confidence 4
No 333
>PRK05439 pantothenate kinase; Provisional
Probab=99.76 E-value=3.6e-18 Score=179.60 Aligned_cols=192 Identities=20% Similarity=0.289 Sum_probs=146.3
Q ss_pred CCCcceEEEEECCCCCcHHHHHHHHHhhC------CCeeEEEECCccccccc---cc--ccCCCCcccccchHHHHHHHH
Q 038045 61 KNDGIILIGLAGPSGAGKTIFTEKILNFM------PSIAVISMDNYNDSSRV---VD--GNFDDPRLTDYDTLLENVRDL 129 (621)
Q Consensus 61 ~Ge~~iIVGI~GpSGSGKSTLlr~LagLl------P~sGvI~lDg~~~~~R~---Ig--~vfQdp~l~d~~tV~enL~~L 129 (621)
....+++|||+|++||||||+++.|+.++ +.+..|++|||+..... -+ -.+..|..||...+.+.|..+
T Consensus 82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~kg~Pes~D~~~l~~~L~~L 161 (311)
T PRK05439 82 GQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEERGLMKRKGFPESYDMRALLRFLSDV 161 (311)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhhhhccccCCCcccccHHHHHHHHHHH
Confidence 34568999999999999999999999876 24789999999754321 11 135668899999999999999
Q ss_pred hcCCC-ccCccccccccCccCCceeecCCccEEEEecceecc-ccc------cCCCCeeEEecCCchHHHHHHHHHHHHH
Q 038045 130 REGKP-VQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALS-EKL------RPLLDLRVSVTGGVHFDLVKRVLRDIQR 201 (621)
Q Consensus 130 ~~gk~-V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLl-DEp------~s~LDlkV~Vd~~~d~~LirRI~Rdl~e 201 (621)
+.++. +..|.|++..+.+..++.+.+...+++|+||.++|. +++ .+.+|++|||+++.+....|++.|.++-
T Consensus 162 k~G~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIvIVEGi~~L~~~~~~~~~~l~d~~D~~IfVda~~~~~~~w~i~R~~~l 241 (311)
T PRK05439 162 KSGKPNVTAPVYSHLIYDIVPGEKQTVDQPDILIVEGLNVLQTGQNHHRLFVSDFFDFSIYVDADEDLIEKWYIERFLKL 241 (311)
T ss_pred HcCCCeEEeeeEEeecCCcCCCceEEeCCCCEEEEcCchhccCcccccchhhHHhCCEEEEEECCHHHHHHHHHHHHHHH
Confidence 99886 999999999988876677788889999999999885 555 8999999999999988766666666532
Q ss_pred ---cCCCceehHhHH-----HHHhcccc-ccchhhhcCCCCceeeccCceeEEecCCCCCc
Q 038045 202 ---VGQEPEEIIQQI-----SETSAKNL-SVDQIKAVYPEGHTETMEQTYDIYLLPPGEDP 253 (621)
Q Consensus 202 ---rG~Ti~~VtHd~-----eea~~R~v-~~~d~iavl~eg~Ie~~~~~aDIYi~P~~~~~ 253 (621)
.+.++..+.|+| +++..++. .|.....++.+.+|.|++..||+ +++.+.+.
T Consensus 242 r~~~~rdp~s~~~~~~~~s~~~a~~~a~~~w~~~~~pn~~~~I~Ptk~~ADl-Ii~~~~~h 301 (311)
T PRK05439 242 RETAFSDPDSYFHRYAKLSEEEAIAIARQIWDEINLPNLEENILPTRERADL-ILHKGADH 301 (311)
T ss_pred HHhhhcCcchhhhhhccCCHHHHHHHHHHHHHhcchhhHHHhccCCCcCCCE-EEeCCCCC
Confidence 245566667776 33322211 23344556777899999999999 56666644
No 334
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.76 E-value=1.9e-19 Score=170.89 Aligned_cols=170 Identities=14% Similarity=0.200 Sum_probs=137.1
Q ss_pred eecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-C---CeeEEEECCcc-----ccccccc
Q 038045 38 IQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-P---SIAVISMDNYN-----DSSRVVD 108 (621)
Q Consensus 38 v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P---~sGvI~lDg~~-----~~~R~Ig 108 (621)
-.++++..-+.+..|-++|++|.+|| ||.|.||||||||||+..+.|.+ + -.|.+.+++.. ..+|++|
T Consensus 4 ~l~nvsl~l~g~cLLa~~n~Tia~Ge---ivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~G 80 (213)
T COG4136 4 CLKNVSLRLPGSCLLANVNFTIAKGE---IVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIG 80 (213)
T ss_pred eeeeeeecCCCceEEEeeeEEecCCc---EEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhhee
Confidence 35677788888999999999999999 99999999999999999999998 4 37999999873 3467899
Q ss_pred ccCCCCcccccchHHHHHHHHhc----CC-----------CccC-ccccccccCccCCceeecCCccEEEEecceecccc
Q 038045 109 GNFDDPRLTDYDTLLENVRDLRE----GK-----------PVQV-PIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEK 172 (621)
Q Consensus 109 ~vfQdp~l~d~~tV~enL~~L~~----gk-----------~V~~-p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDE 172 (621)
+.||++-+||+.+|.+|+.+... +. .+.+ ..++..+...+|||+.+++..|+++.+|.++|+||
T Consensus 81 iLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDE 160 (213)
T COG4136 81 ILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDE 160 (213)
T ss_pred eeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCC
Confidence 99999999999999999976331 11 1111 12555678899999999999999999999999999
Q ss_pred ccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHH
Q 038045 173 LRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISET 216 (621)
Q Consensus 173 p~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea 216 (621)
|++.||..+ ......-+.....+.|...+.|+||.+.+
T Consensus 161 PFS~LD~AL------R~qfR~wVFs~~r~agiPtv~VTHD~~Dv 198 (213)
T COG4136 161 PFSRLDVAL------RDQFRQWVFSEVRAAGIPTVQVTHDLQDV 198 (213)
T ss_pred chhHHHHHH------HHHHHHHHHHHHHhcCCCeEEEecccccC
Confidence 999999642 11233334445667799999999997655
No 335
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=4e-19 Score=202.82 Aligned_cols=180 Identities=12% Similarity=0.055 Sum_probs=128.1
Q ss_pred eecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-----c------cc
Q 038045 38 IQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-----S------SR 105 (621)
Q Consensus 38 v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-----~------~R 105 (621)
..+++++.+|...+|+++||.+.+|+ ++||+||||||||||+++|+|++ |+.|.|.+++... . ..
T Consensus 3 ~i~nls~~~g~~~~l~~vs~~i~~Ge---~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~ 79 (638)
T PRK10636 3 VFSSLQIRRGVRVLLDNATATINPGQ---KVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQP 79 (638)
T ss_pred EEEEEEEEeCCceeecCcEEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCC
Confidence 46789999999999999999999999 99999999999999999999998 8999999987410 0 11
Q ss_pred cccccCCCCcccccchHHH-----------------------------HHHHHhcCCCccC--ccccccccCccCCceee
Q 038045 106 VVDGNFDDPRLTDYDTLLE-----------------------------NVRDLREGKPVQV--PIYDFESSSRTGYRTVE 154 (621)
Q Consensus 106 ~Ig~vfQdp~l~d~~tV~e-----------------------------nL~~L~~gk~V~~--p~yd~~~~~rsggq~qr 154 (621)
.++++++.+..+...+... .+..+.. .+.+ ...+.....+|||++++
T Consensus 80 ~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~--~lgl~~~~~~~~~~~LSgGerqR 157 (638)
T PRK10636 80 ALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLH--GLGFSNEQLERPVSDFSGGWRMR 157 (638)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHH--hCCCCchhhcCchhhcCHHHHHH
Confidence 2334443322221111100 0000000 1112 12355667899999999
Q ss_pred cCCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCc
Q 038045 155 VPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGH 234 (621)
Q Consensus 155 Va~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~ 234 (621)
+..+++++.+|.++|+|||++.||+. ...+ +...+.+.+.+++.|+|+..... .+++++.++..|.
T Consensus 158 v~LA~aL~~~P~lLLLDEPtn~LD~~-------~~~~---L~~~L~~~~~tviivsHd~~~l~----~~~d~i~~L~~G~ 223 (638)
T PRK10636 158 LNLAQALICRSDLLLLDEPTNHLDLD-------AVIW---LEKWLKSYQGTLILISHDRDFLD----PIVDKIIHIEQQS 223 (638)
T ss_pred HHHHHHHccCCCEEEEcCCCCcCCHH-------HHHH---HHHHHHhCCCeEEEEeCCHHHHH----HhcCEEEEEeCCE
Confidence 99999999999999999999999972 2233 33444455779999999988776 5666777777776
Q ss_pred ee
Q 038045 235 TE 236 (621)
Q Consensus 235 Ie 236 (621)
+.
T Consensus 224 i~ 225 (638)
T PRK10636 224 LF 225 (638)
T ss_pred EE
Confidence 64
No 336
>PRK07429 phosphoribulokinase; Provisional
Probab=99.75 E-value=1.1e-17 Score=177.31 Aligned_cols=171 Identities=26% Similarity=0.483 Sum_probs=141.4
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhhC-C-CeeEEEECCccccc----ccccccCCCCcccccchHHHHHHHHhcCCCcc
Q 038045 63 DGIILIGLAGPSGAGKTIFTEKILNFM-P-SIAVISMDNYNDSS----RVVDGNFDDPRLTDYDTLLENVRDLREGKPVQ 136 (621)
Q Consensus 63 e~~iIVGI~GpSGSGKSTLlr~LagLl-P-~sGvI~lDg~~~~~----R~Ig~vfQdp~l~d~~tV~enL~~L~~gk~V~ 136 (621)
.++++|||+|+||||||||++.|++++ + ...+|++|+++... +..++.+.+|...+...+.+++..++.++.+.
T Consensus 6 ~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~l~p~~~~~d~l~~~l~~L~~g~~I~ 85 (327)
T PRK07429 6 DRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYHSYDRKQRKELGITALDPRANNLDIMYEHLKALKTGQPIL 85 (327)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccccCCHHHHHhcCCcccCccchHHHHHHHHHHHHHCCCcee
Confidence 468899999999999999999999998 4 35688999986432 23677777888887888999999999999999
Q ss_pred CccccccccCccCCceeecCCccEEEEecceeccc-cccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHH
Q 038045 137 VPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSE-KLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISE 215 (621)
Q Consensus 137 ~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlD-Ep~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~ee 215 (621)
.|.|++..+.... ...+...+++|+||.+++.+ ...+.+|.+||++++.+.++.|++.|+..++|.+.+.+...++.
T Consensus 86 ~P~yd~~~g~~~~--~~~i~p~~iVIvEG~~~l~~~~lr~~~D~~I~Vda~~evr~~Rri~Rd~~rrG~s~eei~~~i~~ 163 (327)
T PRK07429 86 KPIYNHETGTFDP--PEYIEPNKIVVVEGLHPLYDERVRELYDFKVYLDPPEEVKIAWKIKRDMAKRGHTYEQVLAEIEA 163 (327)
T ss_pred cceeecCCCCcCC--cEecCCCcEEEEechhhcCcHhHHhhCCEEEEEECCHHHHHHHHHHHHHhhcCCCHHHHHHHHHH
Confidence 9999998876543 23466679999999987765 46799999999999999999999999999999999888887765
Q ss_pred HhccccccchhhhcCCCCceeeccCceeEEe
Q 038045 216 TSAKNLSVDQIKAVYPEGHTETMEQTYDIYL 246 (621)
Q Consensus 216 a~~R~v~~~d~iavl~eg~Ie~~~~~aDIYi 246 (621)
.. ..+..++.|....+|+++
T Consensus 164 r~-----------pd~~~yI~P~k~~ADiVI 183 (327)
T PRK07429 164 RE-----------PDFEAYIRPQRQWADVVI 183 (327)
T ss_pred hC-----------ccHhhhhcccccCCCEEE
Confidence 43 345668888889999854
No 337
>PLN03130 ABC transporter C family member; Provisional
Probab=99.75 E-value=5.1e-19 Score=219.06 Aligned_cols=192 Identities=13% Similarity=0.114 Sum_probs=154.0
Q ss_pred eeecceeeeeCc--EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcc-------ccccc
Q 038045 37 PIQDPLSFEKGF--FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYN-------DSSRV 106 (621)
Q Consensus 37 ~v~~~lsf~~G~--~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~-------~~~R~ 106 (621)
...++++|.|.. ..+|+++||++++|+ .|||+|++|||||||++.|.+++ |..|.|.+||.. ..++.
T Consensus 1238 I~f~nVsf~Y~~~~~~VL~~is~~I~~Ge---kVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~ 1314 (1622)
T PLN03130 1238 IKFEDVVLRYRPELPPVLHGLSFEISPSE---KVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKV 1314 (1622)
T ss_pred EEEEEEEEEeCCCCCceecceeEEEcCCC---EEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhc
Confidence 467889998853 479999999999999 89999999999999999999999 999999999973 23467
Q ss_pred ccccCCCCcccccchHHHHHHHHhcCC---------Cc-------cCc-cccccc----cCccCCceeecCCccEEEEec
Q 038045 107 VDGNFDDPRLTDYDTLLENVRDLREGK---------PV-------QVP-IYDFES----SSRTGYRTVEVPSSRIVIIEG 165 (621)
Q Consensus 107 Ig~vfQdp~l~d~~tV~enL~~L~~gk---------~V-------~~p-~yd~~~----~~rsggq~qrVa~ArVLIvEG 165 (621)
+++++|+|.+|+. |+++||....... .. ..| .+|... ..+|+||+|+++.||+++-++
T Consensus 1315 IsiVpQdp~LF~G-TIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p 1393 (1622)
T PLN03130 1315 LGIIPQAPVLFSG-TVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRS 1393 (1622)
T ss_pred cEEECCCCccccc-cHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCC
Confidence 9999999999975 9999996532110 00 112 233322 367899999999999999999
Q ss_pred ceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEE
Q 038045 166 IYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIY 245 (621)
Q Consensus 166 ~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIY 245 (621)
.++++||+++.+|. ...+.+.+..+.. -.++|++.|.|++.... -+|++.+|++|.+.+.+++.++.
T Consensus 1394 ~ILILDEATSaLD~-------~Te~~Iq~~I~~~-~~~~TvI~IAHRL~tI~-----~~DrIlVLd~G~IvE~Gt~~eLl 1460 (1622)
T PLN03130 1394 KILVLDEATAAVDV-------RTDALIQKTIREE-FKSCTMLIIAHRLNTII-----DCDRILVLDAGRVVEFDTPENLL 1460 (1622)
T ss_pred CEEEEECCCCCCCH-------HHHHHHHHHHHHH-CCCCEEEEEeCChHHHH-----hCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999996 2234555555543 34899999999998775 36888999999999999988873
No 338
>PLN03232 ABC transporter C family member; Provisional
Probab=99.75 E-value=2.8e-19 Score=220.30 Aligned_cols=192 Identities=15% Similarity=0.163 Sum_probs=153.0
Q ss_pred eeecceeeeeCc--EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-------cccc
Q 038045 37 PIQDPLSFEKGF--FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-------SSRV 106 (621)
Q Consensus 37 ~v~~~lsf~~G~--~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-------~~R~ 106 (621)
...++++|.|+. ..+|+++||++++|+ .|||+|+||||||||++.|.+++ |..|.|.+||... .++.
T Consensus 1235 I~f~nVsf~Y~~~~~~vL~~isl~I~~Ge---kvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~ 1311 (1495)
T PLN03232 1235 IKFEDVHLRYRPGLPPVLHGLSFFVSPSE---KVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRV 1311 (1495)
T ss_pred EEEEEEEEEECCCCCcccccceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhh
Confidence 457889998843 579999999999999 89999999999999999999999 9999999999732 2467
Q ss_pred ccccCCCCcccccchHHHHHHHHhcC---------CCc-------cCc-ccccc----ccCccCCceeecCCccEEEEec
Q 038045 107 VDGNFDDPRLTDYDTLLENVRDLREG---------KPV-------QVP-IYDFE----SSSRTGYRTVEVPSSRIVIIEG 165 (621)
Q Consensus 107 Ig~vfQdp~l~d~~tV~enL~~L~~g---------k~V-------~~p-~yd~~----~~~rsggq~qrVa~ArVLIvEG 165 (621)
+++++|+|.+|+ .|+++||...... +.+ ..| .+|.. -..+|+||+|+++.||+++-++
T Consensus 1312 i~iVpQdp~LF~-gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~ 1390 (1495)
T PLN03232 1312 LSIIPQSPVLFS-GTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRS 1390 (1495)
T ss_pred cEEECCCCeeeC-ccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 999999999997 4999999643211 000 111 23322 2368899999999999999999
Q ss_pred ceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEE
Q 038045 166 IYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIY 245 (621)
Q Consensus 166 ~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIY 245 (621)
.++++||+++.+|.. ..+.+.+..+.. ..++|++.|.|++.... -+|++.+|++|.+.+.+++.++.
T Consensus 1391 ~ILILDEATSaLD~~-------Te~~Iq~~L~~~-~~~~TvI~IAHRl~ti~-----~~DrIlVL~~G~ivE~Gt~~eLl 1457 (1495)
T PLN03232 1391 KILVLDEATASVDVR-------TDSLIQRTIREE-FKSCTMLVIAHRLNTII-----DCDKILVLSSGQVLEYDSPQELL 1457 (1495)
T ss_pred CEEEEECCcccCCHH-------HHHHHHHHHHHH-cCCCEEEEEeCCHHHHH-----hCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999962 234455544443 24899999999997765 37888999999999999988874
No 339
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.75 E-value=1.7e-18 Score=170.33 Aligned_cols=193 Identities=16% Similarity=0.137 Sum_probs=154.8
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc---------cccc
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND---------SSRV 106 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~---------~~R~ 106 (621)
.-.++++.++|.|.|++++||.+.+|+ +=+|+|||||||||++..|.|.- |..|.+.++|..+ .+..
T Consensus 6 L~~~~vsVsF~GF~Aln~ls~~v~~Ge---lr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~G 82 (249)
T COG4674 6 LYLDGVSVSFGGFKALNDLSFSVDPGE---LRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAG 82 (249)
T ss_pred EEEeceEEEEcceeeeeeeEEEecCCe---EEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhc
Confidence 456778888899999999999999999 99999999999999999999999 8999999999421 2346
Q ss_pred ccccCCCCcccccchHHHHHHHHhcC-CCccC------------------------ccccccccCccCCceeecCCccEE
Q 038045 107 VDGNFDDPRLTDYDTLLENVRDLREG-KPVQV------------------------PIYDFESSSRTGYRTVEVPSSRIV 161 (621)
Q Consensus 107 Ig~vfQdp~l~d~~tV~enL~~L~~g-k~V~~------------------------p~yd~~~~~rsggq~qrVa~ArVL 161 (621)
+|--||-|..|...+|++|++..... +.+.. +..+.....+|.||+|.+.+.-++
T Consensus 83 IGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll 162 (249)
T COG4674 83 IGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLL 162 (249)
T ss_pred cCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheee
Confidence 88899999999999999999864322 21110 112223456788999999999999
Q ss_pred EEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCc
Q 038045 162 IIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQT 241 (621)
Q Consensus 162 IvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~ 241 (621)
+-+|.++|.|||...+- +.+....-++.+.++ .+.++..|.|||..+. .+++++.++++|.+...++.
T Consensus 163 ~Q~P~lLLlDEPvAGMT-------d~Et~~taeLl~~la-~~hsilVVEHDM~Fvr----~~A~~VTVlh~G~VL~EGsl 230 (249)
T COG4674 163 AQDPKLLLLDEPVAGMT-------DAETEKTAELLKSLA-GKHSILVVEHDMGFVR----EIADKVTVLHEGSVLAEGSL 230 (249)
T ss_pred ccCCcEEEecCccCCCc-------HHHHHHHHHHHHHHh-cCceEEEEeccHHHHH----HhhheeEEEeccceeecccH
Confidence 99999999999988775 234444455555543 4679999999999887 77888889999998888877
Q ss_pred eeE
Q 038045 242 YDI 244 (621)
Q Consensus 242 aDI 244 (621)
.++
T Consensus 231 d~v 233 (249)
T COG4674 231 DEV 233 (249)
T ss_pred HHh
Confidence 766
No 340
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.75 E-value=1.1e-18 Score=214.40 Aligned_cols=181 Identities=15% Similarity=0.180 Sum_probs=140.0
Q ss_pred eeecceeeeeCc---EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEEC-Ccc-------ccc
Q 038045 37 PIQDPLSFEKGF---FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMD-NYN-------DSS 104 (621)
Q Consensus 37 ~v~~~lsf~~G~---~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lD-g~~-------~~~ 104 (621)
...++++|.|+. ..+|+++||++++|+ ++||+||||||||||+++|+|++ |..|.|.++ |.. ..+
T Consensus 383 I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge---~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr 459 (1466)
T PTZ00265 383 IQFKNVRFHYDTRKDVEIYKDLNFTLTEGK---TYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWR 459 (1466)
T ss_pred EEEEEEEEEcCCCCCCceeccceEEEcCCC---EEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHH
Confidence 457789998864 469999999999999 99999999999999999999999 999999995 442 123
Q ss_pred ccccccCCCCcccccchHHHHHHHHhcCC---------------------------------------------------
Q 038045 105 RVVDGNFDDPRLTDYDTLLENVRDLREGK--------------------------------------------------- 133 (621)
Q Consensus 105 R~Ig~vfQdp~l~d~~tV~enL~~L~~gk--------------------------------------------------- 133 (621)
+.+++++|+|.+|+ .|+.+||.+.....
T Consensus 460 ~~Ig~V~Q~~~LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 538 (1466)
T PTZ00265 460 SKIGVVSQDPLLFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMR 538 (1466)
T ss_pred HhccEecccccchh-ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcc
Confidence 56999999999997 59999998732100
Q ss_pred ----C------------c-------cCc-cc----cccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecC
Q 038045 134 ----P------------V-------QVP-IY----DFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTG 185 (621)
Q Consensus 134 ----~------------V-------~~p-~y----d~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~ 185 (621)
. + .+| .| ......+||||+|+++++|+++.+|.++++|||++.||..
T Consensus 539 ~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~----- 613 (1466)
T PTZ00265 539 KNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNK----- 613 (1466)
T ss_pred cccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHH-----
Confidence 0 0 011 11 1234578999999999999999999999999999999963
Q ss_pred CchHHHHHHHHHHHHH-cCCCceehHhHHHHHhccccccchhhhcCCCC
Q 038045 186 GVHFDLVKRVLRDIQR-VGQEPEEIIQQISETSAKNLSVDQIKAVYPEG 233 (621)
Q Consensus 186 ~~d~~LirRI~Rdl~e-rG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg 233 (621)
....+....+.+.+ .|.|++.|+|++... ..+|++.++++|
T Consensus 614 --se~~i~~~L~~~~~~~g~TvIiIsHrls~i-----~~aD~Iivl~~g 655 (1466)
T PTZ00265 614 --SEYLVQKTINNLKGNENRITIIIAHRLSTI-----RYANTIFVLSNR 655 (1466)
T ss_pred --HHHHHHHHHHHHhhcCCCEEEEEeCCHHHH-----HhCCEEEEEeCC
Confidence 23444444454443 589999999998765 356777777765
No 341
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.74 E-value=1.5e-18 Score=189.06 Aligned_cols=193 Identities=16% Similarity=0.207 Sum_probs=152.6
Q ss_pred eeeecceeeee--CcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc--c-----cc
Q 038045 36 VPIQDPLSFEK--GFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND--S-----SR 105 (621)
Q Consensus 36 ~~v~~~lsf~~--G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~--~-----~R 105 (621)
...++++++-. ..+.++++|||.+.+|+ .+||+||||||||||+|.|.|.. |..|.|.+||... + -+
T Consensus 334 ~L~Ve~l~~~PPg~~~pil~~isF~l~~G~---~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~ 410 (580)
T COG4618 334 ALSVERLTAAPPGQKKPILKGISFALQAGE---ALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGR 410 (580)
T ss_pred eeeEeeeeecCCCCCCcceecceeEecCCc---eEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhcc
Confidence 34566666642 35689999999999999 99999999999999999999999 8999999998631 1 25
Q ss_pred cccccCCCCcccccchHHHHHHHHhcCCC-----------------ccCc-cccccc----cCccCCceeecCCccEEEE
Q 038045 106 VVDGNFDDPRLTDYDTLLENVRDLREGKP-----------------VQVP-IYDFES----SSRTGYRTVEVPSSRIVII 163 (621)
Q Consensus 106 ~Ig~vfQdp~l~d~~tV~enL~~L~~gk~-----------------V~~p-~yd~~~----~~rsggq~qrVa~ArVLIv 163 (621)
++||.+|+-.+|+- |+.|||+.+..... ...| .||-.. ..+||||+||++.+|++.-
T Consensus 411 hiGYLPQdVeLF~G-TIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG 489 (580)
T COG4618 411 HIGYLPQDVELFDG-TIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYG 489 (580)
T ss_pred ccCcCcccceecCC-cHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcC
Confidence 79999999999974 89999987653210 1122 355443 4678999999999999999
Q ss_pred ecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCcee
Q 038045 164 EGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYD 243 (621)
Q Consensus 164 EG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aD 243 (621)
+|.++++|||.++||. .-+..+.+-+...+.+|.+++.|+|+-... ...|.+.+|.+|.+...++..+
T Consensus 490 ~P~lvVLDEPNsNLD~-------~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L-----~~~Dkilvl~~G~~~~FG~r~e 557 (580)
T COG4618 490 DPFLVVLDEPNSNLDS-------EGEAALAAAILAAKARGGTVVVIAHRPSAL-----ASVDKILVLQDGRIAAFGPREE 557 (580)
T ss_pred CCcEEEecCCCCCcch-------hHHHHHHHHHHHHHHcCCEEEEEecCHHHH-----hhcceeeeecCChHHhcCCHHH
Confidence 9999999999999995 223444444455678899999999997655 3567778899999988887766
Q ss_pred E
Q 038045 244 I 244 (621)
Q Consensus 244 I 244 (621)
+
T Consensus 558 V 558 (580)
T COG4618 558 V 558 (580)
T ss_pred H
Confidence 6
No 342
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.74 E-value=1.1e-18 Score=195.89 Aligned_cols=184 Identities=13% Similarity=0.082 Sum_probs=136.1
Q ss_pred eeecceeeeeCc-----EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-------c
Q 038045 37 PIQDPLSFEKGF-----FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-------S 103 (621)
Q Consensus 37 ~v~~~lsf~~G~-----~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-------~ 103 (621)
...++++|.|+. ..+|+++||++++|+ +++|+||||||||||++.|+|++ |+.|.|.+||... .
T Consensus 338 i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~---~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~ 414 (555)
T TIGR01194 338 IELKDVHMNPKAPEGSEGFALGPIDLRIAQGD---IVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDY 414 (555)
T ss_pred EEEEEEEEEeCCCCCCcCceeccceEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHH
Confidence 456788998864 259999999999999 99999999999999999999999 9999999998732 2
Q ss_pred cccccccCCCCcccccchHHHHHH---------H-Hhc---CCCc-cCc-cccccccCccCCceeecCCccEEEEeccee
Q 038045 104 SRVVDGNFDDPRLTDYDTLLENVR---------D-LRE---GKPV-QVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYA 168 (621)
Q Consensus 104 ~R~Ig~vfQdp~l~d~~tV~enL~---------~-L~~---gk~V-~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lL 168 (621)
++.+++++|++.+|+. ++.+|.. . +.. ...+ ..| .|+. ...+||||+|+++.+|+++-+|.++
T Consensus 415 ~~~i~~v~q~~~lf~~-ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t-~~~LSgGq~qRlalaRall~~~~il 492 (555)
T TIGR01194 415 RDLFSAIFADFHLFDD-LIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFST-TTALSTGQQKRLALICAWLEDRPIL 492 (555)
T ss_pred HhhCcEEccChhhhhh-hhhcccccchhHHHHHHHHHHcCCchhhcccccccCC-cccCCHHHHHHHHHHHHHHcCCCEE
Confidence 3568999999887753 4444431 1 110 0001 111 1222 2568999999999999999999999
Q ss_pred ccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCcee
Q 038045 169 LSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTE 236 (621)
Q Consensus 169 LlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie 236 (621)
++|||++.+|.. .+..+.+.+.+.+...|.|++.|+|+.... ..+|.+.++++|.+.
T Consensus 493 ilDE~ts~LD~~------~~~~i~~~l~~~~~~~~~tiiiisH~~~~~-----~~~d~i~~l~~G~i~ 549 (555)
T TIGR01194 493 LFDEWAADQDPA------FKRFFYEELLPDLKRQGKTIIIISHDDQYF-----ELADQIIKLAAGCIV 549 (555)
T ss_pred EEeCCccCCCHH------HHHHHHHHHHHHHHhCCCEEEEEeccHHHH-----HhCCEEEEEECCEEE
Confidence 999999999973 122233344444445689999999998643 456777778777654
No 343
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.74 E-value=8.7e-19 Score=206.71 Aligned_cols=201 Identities=18% Similarity=0.200 Sum_probs=160.7
Q ss_pred cceeeecceeeeeC---cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-------
Q 038045 34 EIVPIQDPLSFEKG---FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND------- 102 (621)
Q Consensus 34 ~~~~v~~~lsf~~G---~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~------- 102 (621)
+-....++++|.|- ...+++|+||++++|+ .++|+|||||||||+..+|..++ |..|.|.+||+.-
T Consensus 985 ~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~Gq---TvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~ 1061 (1228)
T KOG0055|consen 985 KGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQ---TVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKW 1061 (1228)
T ss_pred eeEEEEeeeEeeCCCCCCchhhcCCcEEecCCC---EEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHH
Confidence 33456788889874 6779999999999999 99999999999999999999999 9999999999832
Q ss_pred ccccccccCCCCcccccchHHHHHHHHhcCC-----------------CccCc-cccccc----cCccCCceeecCCccE
Q 038045 103 SSRVVDGNFDDPRLTDYDTLLENVRDLREGK-----------------PVQVP-IYDFES----SSRTGYRTVEVPSSRI 160 (621)
Q Consensus 103 ~~R~Ig~vfQdp~l~d~~tV~enL~~L~~gk-----------------~V~~p-~yd~~~----~~rsggq~qrVa~ArV 160 (621)
.+++++.|-|+|.+|+ .|++|||.+....- -..+| .||-.. .++||||+||+++||+
T Consensus 1062 LR~~i~lVsQEP~LF~-~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARA 1140 (1228)
T KOG0055|consen 1062 LRKQIGLVSQEPVLFN-GTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARA 1140 (1228)
T ss_pred HHHhcceeccCchhhc-ccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHH
Confidence 3468999999999986 68999999862210 01123 355443 4779999999999999
Q ss_pred EEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccC
Q 038045 161 VIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQ 240 (621)
Q Consensus 161 LIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~ 240 (621)
++-+|.+||+||.++.||- +..+..+.-... ...|+|-+.|.|++... .-+|.++|++.|.+.+.++
T Consensus 1141 ilRnPkILLLDEATSALDs-------eSErvVQeALd~-a~~gRT~IvIAHRLSTI-----qnaD~I~Vi~~G~VvE~Gt 1207 (1228)
T KOG0055|consen 1141 ILRNPKILLLDEATSALDS-------ESERVVQEALDR-AMEGRTTIVIAHRLSTI-----QNADVIAVLKNGKVVEQGT 1207 (1228)
T ss_pred HHcCCCeeeeeccchhhhh-------hhHHHHHHHHHH-hhcCCcEEEEecchhhh-----hcCCEEEEEECCEEEeccc
Confidence 9999999999999999995 223344433333 34589999999998866 4688999999999999999
Q ss_pred ceeEEecCCCCC
Q 038045 241 TYDIYLLPPGED 252 (621)
Q Consensus 241 ~aDIYi~P~~~~ 252 (621)
+.+++ .+.+.+
T Consensus 1208 H~~L~-~~~G~Y 1218 (1228)
T KOG0055|consen 1208 HDELL-AKRGIY 1218 (1228)
T ss_pred HHHHH-hCCCch
Confidence 99984 455543
No 344
>PTZ00243 ABC transporter; Provisional
Probab=99.74 E-value=5.8e-19 Score=218.01 Aligned_cols=199 Identities=14% Similarity=0.105 Sum_probs=154.4
Q ss_pred eeeecceeeeeCc--EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-------ccc
Q 038045 36 VPIQDPLSFEKGF--FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-------SSR 105 (621)
Q Consensus 36 ~~v~~~lsf~~G~--~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-------~~R 105 (621)
....++++|.|.. ..+|++|||+|++|+ .|||+|++|||||||++.|.+++ |..|.|.+||... .++
T Consensus 1308 ~I~f~nVsf~Y~~~~~~vL~~vsf~I~~Ge---kVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~ 1384 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLPLVLRGVSFRIAPRE---KVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRR 1384 (1560)
T ss_pred eEEEEEEEEEeCCCCCceeecceEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHh
Confidence 3568889998854 469999999999999 89999999999999999999999 8999999999732 246
Q ss_pred cccccCCCCcccccchHHHHHHHHhcC---------CCcc-------Cc-cccccc----cCccCCceeecCCccEEEEe
Q 038045 106 VVDGNFDDPRLTDYDTLLENVRDLREG---------KPVQ-------VP-IYDFES----SSRTGYRTVEVPSSRIVIIE 164 (621)
Q Consensus 106 ~Ig~vfQdp~l~d~~tV~enL~~L~~g---------k~V~-------~p-~yd~~~----~~rsggq~qrVa~ArVLIvE 164 (621)
.+++++|+|.+|+. |+++||...... +.+. .| .||... ..+|+||+|++++||+++-+
T Consensus 1385 ~I~iVpQdp~LF~g-TIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~ 1463 (1560)
T PTZ00243 1385 QFSMIPQDPVLFDG-TVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKK 1463 (1560)
T ss_pred cceEECCCCccccc-cHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcC
Confidence 79999999999975 999999642211 0011 11 233222 46899999999999999996
Q ss_pred -cceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCcee
Q 038045 165 -GIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYD 243 (621)
Q Consensus 165 -G~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aD 243 (621)
+.++++||+++.+|.. ..+.+.+..+.. -.++|++.|.|++.... .+|++.+|++|.+...+++.+
T Consensus 1464 ~~~ILlLDEATSaLD~~-------te~~Iq~~L~~~-~~~~TvI~IAHRl~ti~-----~~DrIlVLd~G~VvE~Gt~~e 1530 (1560)
T PTZ00243 1464 GSGFILMDEATANIDPA-------LDRQIQATVMSA-FSAYTVITIAHRLHTVA-----QYDKIIVMDHGAVAEMGSPRE 1530 (1560)
T ss_pred CCCEEEEeCCCccCCHH-------HHHHHHHHHHHH-CCCCEEEEEeccHHHHH-----hCCEEEEEECCEEEEECCHHH
Confidence 7999999999999962 233444444432 24799999999997664 478888999999999999888
Q ss_pred EEecCCCC
Q 038045 244 IYLLPPGE 251 (621)
Q Consensus 244 IYi~P~~~ 251 (621)
+.-.+.+.
T Consensus 1531 Ll~~~~~~ 1538 (1560)
T PTZ00243 1531 LVMNRQSI 1538 (1560)
T ss_pred HHhCCCCH
Confidence 74233333
No 345
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.74 E-value=1.8e-18 Score=196.62 Aligned_cols=185 Identities=14% Similarity=0.081 Sum_probs=143.7
Q ss_pred eCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CC---eeEEEECCccc----ccccccccCCCCccc
Q 038045 46 KGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PS---IAVISMDNYND----SSRVVDGNFDDPRLT 117 (621)
Q Consensus 46 ~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~---sGvI~lDg~~~----~~R~Ig~vfQdp~l~ 117 (621)
++.+.+|+++|+.+++|+ +++|+||||||||||+++|+|.. |+ .|.|.++|... .++.++|++|++.++
T Consensus 35 ~~~~~iL~~vs~~i~~Ge---~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~ 111 (617)
T TIGR00955 35 RPRKHLLKNVSGVAKPGE---LLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFI 111 (617)
T ss_pred cCccccccCCEEEEeCCe---EEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccC
Confidence 456779999999999999 99999999999999999999988 53 79999999742 245789999999999
Q ss_pred ccchHHHHHHHHhcCC---C----------------ccCc-ccccccc------CccCCceeecCCccEEEEecceeccc
Q 038045 118 DYDTLLENVRDLREGK---P----------------VQVP-IYDFESS------SRTGYRTVEVPSSRIVIIEGIYALSE 171 (621)
Q Consensus 118 d~~tV~enL~~L~~gk---~----------------V~~p-~yd~~~~------~rsggq~qrVa~ArVLIvEG~lLLlD 171 (621)
+.+||+||+.+....+ . ..+. ..+...+ ..|||+++++..+++++.+|.++++|
T Consensus 112 ~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllD 191 (617)
T TIGR00955 112 PTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCD 191 (617)
T ss_pred ccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEee
Confidence 9999999998643211 0 0111 1222222 48999999999999999999999999
Q ss_pred cccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHH-HHhccccccchhhhcCCCCceeeccCceeE
Q 038045 172 KLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQIS-ETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 172 Ep~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~e-ea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
||++.||... ...+.+..+.+.+.|.|++.++|+.. +.. ...|.+.++.+|.+...+++.++
T Consensus 192 EPtsgLD~~~-------~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~----~~~D~i~ll~~G~~v~~G~~~~~ 254 (617)
T TIGR00955 192 EPTSGLDSFM-------AYSVVQVLKGLAQKGKTIICTIHQPSSELF----ELFDKIILMAEGRVAYLGSPDQA 254 (617)
T ss_pred CCCcchhHHH-------HHHHHHHHHHHHhCCCEEEEEeCCCCHHHH----HHhceEEEeeCCeEEEECCHHHH
Confidence 9999999732 23344444555567999999999974 443 56677788888888777766554
No 346
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.73 E-value=2.1e-18 Score=197.63 Aligned_cols=162 Identities=12% Similarity=0.071 Sum_probs=127.3
Q ss_pred eeecceeeee-CcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccccccccccCCCC
Q 038045 37 PIQDPLSFEK-GFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDSSRVVDGNFDDP 114 (621)
Q Consensus 37 ~v~~~lsf~~-G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~~R~Ig~vfQdp 114 (621)
...++++|.+ +...+++++||++++|+ +++|+||||||||||+++|+|+. |..|.|.+++ ++.++|++|+|
T Consensus 452 i~~~nv~~~~~~~~~il~~isl~i~~Ge---~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~----~~~i~~v~Q~~ 524 (659)
T TIGR00954 452 IKFENIPLVTPNGDVLIESLSFEVPSGN---HLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA----KGKLFYVPQRP 524 (659)
T ss_pred EEEEeeEEECCCCCeeeecceEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC----CCcEEEECCCC
Confidence 4577888876 34579999999999999 99999999999999999999998 7889998874 45799999999
Q ss_pred cccccchHHHHHHHHhc-------CC----------CccCcc-------cc---ccccCccCCceeecCCccEEEEecce
Q 038045 115 RLTDYDTLLENVRDLRE-------GK----------PVQVPI-------YD---FESSSRTGYRTVEVPSSRIVIIEGIY 167 (621)
Q Consensus 115 ~l~d~~tV~enL~~L~~-------gk----------~V~~p~-------yd---~~~~~rsggq~qrVa~ArVLIvEG~l 167 (621)
.+++. ++.+|+..... .. .+.+.. |+ ...+.+|+|++|+++.+|+++.+|.+
T Consensus 525 ~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~i 603 (659)
T TIGR00954 525 YMTLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQF 603 (659)
T ss_pred CCCCc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCE
Confidence 88876 99999975321 00 011110 01 01257899999999999999999999
Q ss_pred eccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHH
Q 038045 168 ALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISET 216 (621)
Q Consensus 168 LLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea 216 (621)
+++|||++.||.. ....+.+.+++.|.|++.++|+.+..
T Consensus 604 llLDEpts~LD~~----------~~~~l~~~l~~~~~tvI~isH~~~~~ 642 (659)
T TIGR00954 604 AILDECTSAVSVD----------VEGYMYRLCREFGITLFSVSHRKSLW 642 (659)
T ss_pred EEEeCCccCCCHH----------HHHHHHHHHHHcCCEEEEEeCchHHH
Confidence 9999999999972 23334444455699999999998764
No 347
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=3e-18 Score=161.28 Aligned_cols=134 Identities=19% Similarity=0.275 Sum_probs=109.7
Q ss_pred cceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc-------cccccccC
Q 038045 40 DPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS-------SRVVDGNF 111 (621)
Q Consensus 40 ~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~-------~R~Ig~vf 111 (621)
++++|.+....++++++|++++|+ +++|+|+||||||||+++|+|++ |..|.|.++|.... .+.++|+|
T Consensus 3 ~~~~~~~~~~~~l~~~~~~i~~g~---~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~ 79 (157)
T cd00267 3 ENLSFRYGGRTALDNVSLTLKAGE---IVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVP 79 (157)
T ss_pred EEEEEEeCCeeeEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEe
Confidence 456666666689999999999999 99999999999999999999999 88999999985321 13355555
Q ss_pred CCCcccccchHHHHHHHHhcCCCccCccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchHHH
Q 038045 112 DDPRLTDYDTLLENVRDLREGKPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDL 191 (621)
Q Consensus 112 Qdp~l~d~~tV~enL~~L~~gk~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~L 191 (621)
| +|+|+++++..+++++.+|.++++|||+..+|.. ....
T Consensus 80 q----------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~-------~~~~ 118 (157)
T cd00267 80 Q----------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPA-------SRER 118 (157)
T ss_pred e----------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHH-------HHHH
Confidence 5 7889999999999999999999999999999963 2344
Q ss_pred HHHHHHHHHHcCCCceehHhHHHHHh
Q 038045 192 VKRVLRDIQRVGQEPEEIIQQISETS 217 (621)
Q Consensus 192 irRI~Rdl~erG~Ti~~VtHd~eea~ 217 (621)
+.++.+.+.+.+.|+..++|+.+...
T Consensus 119 l~~~l~~~~~~~~tii~~sh~~~~~~ 144 (157)
T cd00267 119 LLELLRELAEEGRTVIIVTHDPELAE 144 (157)
T ss_pred HHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 44555555455789999999988876
No 348
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.73 E-value=1.2e-18 Score=178.39 Aligned_cols=177 Identities=12% Similarity=0.146 Sum_probs=129.8
Q ss_pred cceeeeeCcE-EEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEE-----------ECCcccc---
Q 038045 40 DPLSFEKGFF-VVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVIS-----------MDNYNDS--- 103 (621)
Q Consensus 40 ~~lsf~~G~~-~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~-----------lDg~~~~--- 103 (621)
.+++|.|+.. .+++++++ +.+|+ +++|+||||||||||+++|+|++ |+.|.|. ++|....
T Consensus 4 ~~~~~~y~~~~~~l~~i~~-i~~Ge---~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~ 79 (255)
T cd03236 4 DEPVHRYGPNSFKLHRLPV-PREGQ---VLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYF 79 (255)
T ss_pred cCcceeecCcchhhhcCCC-CCCCC---EEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhh
Confidence 4566777654 59999994 99999 99999999999999999999999 8999995 6665321
Q ss_pred ------cccccccCCCCcccccchHHHHHHHHhcCC-----------CccC-ccccccccCccCCceeecCCccEEEEec
Q 038045 104 ------SRVVDGNFDDPRLTDYDTLLENVRDLREGK-----------PVQV-PIYDFESSSRTGYRTVEVPSSRIVIIEG 165 (621)
Q Consensus 104 ------~R~Ig~vfQdp~l~d~~tV~enL~~L~~gk-----------~V~~-p~yd~~~~~rsggq~qrVa~ArVLIvEG 165 (621)
...+++++|++..++. ++.+++....... ...+ ...+.....+++|+++++..+++++.+|
T Consensus 80 ~~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p 158 (255)
T cd03236 80 TKLLEGDVKVIVKPQYVDLIPK-AVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDA 158 (255)
T ss_pred HHhhhcccceeeecchhccCch-HHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence 1135677888777663 5555554321110 1111 1234455678999999999999999999
Q ss_pred ceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCC
Q 038045 166 IYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPE 232 (621)
Q Consensus 166 ~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~e 232 (621)
.++++|||++.||.. ....+..+.+.+.+.|.+++.++|+.+... .++|++.+++.
T Consensus 159 ~illlDEPts~LD~~-------~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~----~~ad~i~~l~~ 214 (255)
T cd03236 159 DFYFFDEPSSYLDIK-------QRLNAARLIRELAEDDNYVLVVEHDLAVLD----YLSDYIHCLYG 214 (255)
T ss_pred CEEEEECCCCCCCHH-------HHHHHHHHHHHHHhcCCEEEEEECCHHHHH----HhCCEEEEECC
Confidence 999999999999973 223444555555566899999999998876 56666666653
No 349
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.73 E-value=9e-19 Score=216.22 Aligned_cols=191 Identities=15% Similarity=0.131 Sum_probs=152.6
Q ss_pred eeecceeeeeCc--EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-------cccc
Q 038045 37 PIQDPLSFEKGF--FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-------SSRV 106 (621)
Q Consensus 37 ~v~~~lsf~~G~--~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-------~~R~ 106 (621)
...++++|.|.. ..+|++|||++++|+ .|||+|++|||||||++.|.+++ |..|.|.+||... .++.
T Consensus 1285 I~f~nVsf~Y~~~~~~vL~~is~~I~~Ge---kiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~ 1361 (1522)
T TIGR00957 1285 VEFRNYCLRYREDLDLVLRHINVTIHGGE---KVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFK 1361 (1522)
T ss_pred EEEEEEEEEeCCCCcccccceeEEEcCCC---EEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhc
Confidence 457788888854 479999999999999 89999999999999999999999 8999999999732 2467
Q ss_pred ccccCCCCcccccchHHHHHHHHhcC---------CCc-------cCc-cccccc----cCccCCceeecCCccEEEEec
Q 038045 107 VDGNFDDPRLTDYDTLLENVRDLREG---------KPV-------QVP-IYDFES----SSRTGYRTVEVPSSRIVIIEG 165 (621)
Q Consensus 107 Ig~vfQdp~l~d~~tV~enL~~L~~g---------k~V-------~~p-~yd~~~----~~rsggq~qrVa~ArVLIvEG 165 (621)
+++++|+|.+|+. |+++||...... +.+ ..| .+|... ..+|+||+|+++.||+++-++
T Consensus 1362 i~iVpQdp~LF~g-TIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1440 (1522)
T TIGR00957 1362 ITIIPQDPVLFSG-SLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKT 1440 (1522)
T ss_pred CeEECCCCcccCc-cHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCC
Confidence 9999999999974 999999632110 000 111 244333 357899999999999999999
Q ss_pred ceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 166 IYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 166 ~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
.++++||+++.+|.. ....+.+..+.. ..++|++.|.|++.... -+|++.+|++|.+...+++.++
T Consensus 1441 ~ILiLDEaTSalD~~-------Te~~Iq~~l~~~-~~~~TvI~IAHRl~ti~-----~~DrIlVld~G~IvE~G~~~eL 1506 (1522)
T TIGR00957 1441 KILVLDEATAAVDLE-------TDNLIQSTIRTQ-FEDCTVLTIAHRLNTIM-----DYTRVIVLDKGEVAEFGAPSNL 1506 (1522)
T ss_pred CEEEEECCcccCCHH-------HHHHHHHHHHHH-cCCCEEEEEecCHHHHH-----hCCEEEEEECCEEEEECCHHHH
Confidence 999999999999962 234555555443 35899999999997764 4688899999999998888877
No 350
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.73 E-value=9.2e-19 Score=168.80 Aligned_cols=165 Identities=15% Similarity=0.207 Sum_probs=129.9
Q ss_pred eeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-------ccccccccCCC
Q 038045 42 LSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-------SSRVVDGNFDD 113 (621)
Q Consensus 42 lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-------~~R~Ig~vfQd 113 (621)
+.+..+...+|++|||.+.+|| +++|+||||||||||+|+++.+. |++|.+.+.|... .+..+.|+.|.
T Consensus 9 ~~y~a~~a~il~~isl~v~~Ge---~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~ 85 (223)
T COG4619 9 VGYLAGDAKILNNISLSVRAGE---FIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQT 85 (223)
T ss_pred HHhhcCCCeeecceeeeecCCc---eEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcC
Confidence 3444567789999999999999 99999999999999999999999 9999999998732 24579999999
Q ss_pred CcccccchHHHHHHHHh---cCC-----------CccCc--cccccccCccCCceeecCCccEEEEecceeccccccCCC
Q 038045 114 PRLTDYDTLLENVRDLR---EGK-----------PVQVP--IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLL 177 (621)
Q Consensus 114 p~l~d~~tV~enL~~L~---~gk-----------~V~~p--~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~L 177 (621)
|.+|. .||++|+.+.- +.+ .+..| ..+....++|||++|+++..|-+-.-|.++|+||+++.|
T Consensus 86 paLfg-~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsAL 164 (223)
T COG4619 86 PALFG-DTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSAL 164 (223)
T ss_pred ccccc-cchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhc
Confidence 99985 68999987632 111 12222 244556788999999999999999999999999999999
Q ss_pred CeeEEecCCchHHHH-HHHHHHHHHcCCCceehHhHHHHHh
Q 038045 178 DLRVSVTGGVHFDLV-KRVLRDIQRVGQEPEEIIQQISETS 217 (621)
Q Consensus 178 DlkV~Vd~~~d~~Li-rRI~Rdl~erG~Ti~~VtHd~eea~ 217 (621)
|+. ..+.+ .-+.|...+....+..|+|+-.++.
T Consensus 165 D~~-------nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~ 198 (223)
T COG4619 165 DES-------NKRNIEEMIHRYVREQNVAVLWITHDKDQAI 198 (223)
T ss_pred Chh-------hHHHHHHHHHHHhhhhceEEEEEecChHHHh
Confidence 972 22222 3344445577788999999977653
No 351
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.72 E-value=7.9e-18 Score=192.00 Aligned_cols=182 Identities=14% Similarity=0.052 Sum_probs=125.6
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc--------ccccc
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND--------SSRVV 107 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~--------~~R~I 107 (621)
.-.+++++.+|...+|+++||.+++|+ ++||+||||||||||+++|+|++ |+.|.|.+++... .....
T Consensus 4 l~i~~ls~~~~~~~il~~is~~i~~Ge---~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~ 80 (635)
T PRK11147 4 ISIHGAWLSFSDAPLLDNAELHIEDNE---RVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVE 80 (635)
T ss_pred EEEeeEEEEeCCceeEeCcEEEECCCC---EEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCC
Confidence 346788888888899999999999999 99999999999999999999998 8999999986310 01122
Q ss_pred cccCCCCc-----ccccch-------------HHHHHHHHh---------cC-----------CCccCccccccccCccC
Q 038045 108 DGNFDDPR-----LTDYDT-------------LLENVRDLR---------EG-----------KPVQVPIYDFESSSRTG 149 (621)
Q Consensus 108 g~vfQdp~-----l~d~~t-------------V~enL~~L~---------~g-----------k~V~~p~yd~~~~~rsg 149 (621)
++++|... .+...+ ..+++..+. .+ ..+.+. .+.....+||
T Consensus 81 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~-~~~~~~~LSg 159 (635)
T PRK11147 81 GTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD-PDAALSSLSG 159 (635)
T ss_pred CCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC-CCCchhhcCH
Confidence 33333210 000000 111221100 00 001111 2455678999
Q ss_pred CceeecCCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhc
Q 038045 150 YRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAV 229 (621)
Q Consensus 150 gq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iav 229 (621)
|+++++..+++++.+|.++|+|||++.||+. ...++.. .+.+.+.+++.|+|+..... .++|++..
T Consensus 160 GekqRv~LAraL~~~P~lLLLDEPt~~LD~~-------~~~~L~~---~L~~~~~tvlivsHd~~~l~----~~~d~i~~ 225 (635)
T PRK11147 160 GWLRKAALGRALVSNPDVLLLDEPTNHLDIE-------TIEWLEG---FLKTFQGSIIFISHDRSFIR----NMATRIVD 225 (635)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCccCHH-------HHHHHHH---HHHhCCCEEEEEeCCHHHHH----HhcCeEEE
Confidence 9999999999999999999999999999972 2233333 33444569999999988775 55666666
Q ss_pred CCCCcee
Q 038045 230 YPEGHTE 236 (621)
Q Consensus 230 l~eg~Ie 236 (621)
+..|.+.
T Consensus 226 L~~G~i~ 232 (635)
T PRK11147 226 LDRGKLV 232 (635)
T ss_pred EECCEEE
Confidence 7777654
No 352
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1.8e-18 Score=189.75 Aligned_cols=192 Identities=14% Similarity=0.134 Sum_probs=149.8
Q ss_pred eeeecceeeeeCcE--EEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcc----c---ccc
Q 038045 36 VPIQDPLSFEKGFF--VVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYN----D---SSR 105 (621)
Q Consensus 36 ~~v~~~lsf~~G~~--~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~----~---~~R 105 (621)
...+++++|.|... .+|+++||++++|| -|+|+|+|||||||+++.|+|.+ |+.|.|.++|.. + .+.
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GE---kvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e 412 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGE---KVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRE 412 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCCC---eEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHH
Confidence 45788999988654 59999999999999 79999999999999999999999 999999999952 1 234
Q ss_pred cccccCCCCcccccchHHHHHHHHhcC----------CCcc-------Cc-----cccccccCccCCceeecCCccEEEE
Q 038045 106 VVDGNFDDPRLTDYDTLLENVRDLREG----------KPVQ-------VP-----IYDFESSSRTGYRTVEVPSSRIVII 163 (621)
Q Consensus 106 ~Ig~vfQdp~l~d~~tV~enL~~L~~g----------k~V~-------~p-----~yd~~~~~rsggq~qrVa~ArVLIv 163 (621)
.++++.|.+.+|+ .|+++|+..-..+ +.+. .| ..+..-...|||+++|++++|+++-
T Consensus 413 ~i~vl~Qr~hlF~-~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~ 491 (573)
T COG4987 413 TISVLTQRVHLFS-GTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLH 491 (573)
T ss_pred HHhhhccchHHHH-HHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHc
Confidence 6888999888774 6888888653322 0111 11 1223335679999999999999999
Q ss_pred ecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCcee
Q 038045 164 EGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYD 243 (621)
Q Consensus 164 EG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aD 243 (621)
+..+.++|||+..||+. .+.+.+.++... -+|+|++.|||+.... ..+|++.++++|.+...+.++.
T Consensus 492 dapl~lLDEPTegLD~~------TE~~vL~ll~~~--~~~kTll~vTHrL~~l-----e~~drIivl~~Gkiie~G~~~~ 558 (573)
T COG4987 492 DAPLWLLDEPTEGLDPI------TERQVLALLFEH--AEGKTLLMVTHRLRGL-----ERMDRIIVLDNGKIIEEGTHAE 558 (573)
T ss_pred CCCeEEecCCcccCChh------hHHHHHHHHHHH--hcCCeEEEEecccccH-----hhcCEEEEEECCeeeecCCHHh
Confidence 99999999999999973 233344443332 2499999999998666 4567888999999999999887
Q ss_pred E
Q 038045 244 I 244 (621)
Q Consensus 244 I 244 (621)
+
T Consensus 559 L 559 (573)
T COG4987 559 L 559 (573)
T ss_pred h
Confidence 6
No 353
>PLN03073 ABC transporter F family; Provisional
Probab=99.71 E-value=7e-18 Score=194.86 Aligned_cols=177 Identities=16% Similarity=0.080 Sum_probs=130.3
Q ss_pred eeecceeeeeC-cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccccccccccCCCC
Q 038045 37 PIQDPLSFEKG-FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDSSRVVDGNFDDP 114 (621)
Q Consensus 37 ~v~~~lsf~~G-~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~~R~Ig~vfQdp 114 (621)
...++++|.|+ ...+|+++||++.+|+ ++||+||||||||||+++|+|++ |..|.|.+++. ..++|++|++
T Consensus 509 L~~~~ls~~y~~~~~il~~vsl~i~~Ge---~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~----~~igyv~Q~~ 581 (718)
T PLN03073 509 ISFSDASFGYPGGPLLFKNLNFGIDLDS---RIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAK----VRMAVFSQHH 581 (718)
T ss_pred EEEEeeEEEeCCCCeeEeccEEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCc----eeEEEEeccc
Confidence 45678888885 4579999999999999 99999999999999999999999 89999988752 4688999875
Q ss_pred cccccchHHHHHHH-H-h--cC----------CCccCc--cccccccCccCCceeecCCccEEEEecceeccccccCCCC
Q 038045 115 RLTDYDTLLENVRD-L-R--EG----------KPVQVP--IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLD 178 (621)
Q Consensus 115 ~l~d~~tV~enL~~-L-~--~g----------k~V~~p--~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LD 178 (621)
. +..++.++... + . .+ ..+.+. ..+.....+|+|+++++..+++++.+|.++++|||++.||
T Consensus 582 ~--~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD 659 (718)
T PLN03073 582 V--DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLD 659 (718)
T ss_pred c--ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 2 22222222111 1 0 00 011121 2244567899999999999999999999999999999999
Q ss_pred eeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCcee
Q 038045 179 LRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTE 236 (621)
Q Consensus 179 lkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie 236 (621)
+. ....+.+.+.+.+.|++.++|+..... ..+|++.++.+|.+.
T Consensus 660 ~~----------s~~~l~~~L~~~~gtvIivSHd~~~i~----~~~drv~~l~~G~i~ 703 (718)
T PLN03073 660 LD----------AVEALIQGLVLFQGGVLMVSHDEHLIS----GSVDELWVVSEGKVT 703 (718)
T ss_pred HH----------HHHHHHHHHHHcCCEEEEEECCHHHHH----HhCCEEEEEECCEEE
Confidence 73 122233333333349999999998876 667777777777664
No 354
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.71 E-value=8.5e-17 Score=156.95 Aligned_cols=173 Identities=35% Similarity=0.629 Sum_probs=137.2
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC--CCeeEEEECCccccc------ccccccCCCCcccccchHHHHHHHHhcCCCccCc
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFM--PSIAVISMDNYNDSS------RVVDGNFDDPRLTDYDTLLENVRDLREGKPVQVP 138 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLl--P~sGvI~lDg~~~~~------R~Ig~vfQdp~l~d~~tV~enL~~L~~gk~V~~p 138 (621)
+|||+||+|||||||+++|++++ ..+..+++|+|+... ...+..++.|..+++..+.+.+..+..+..+..|
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~p 80 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKDLSHEELEERKNNNYDHPDAFDFDLLISHLQDLKNGKSVEIP 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccccccccccHHHhccCCCCCCCcccHHHHHHHHHHHHCCCCEecc
Confidence 58999999999999999999987 357889999986321 1234567788888888888888888888889999
Q ss_pred cccccccCccCCceeecCCccEEEEecceecc-ccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHh
Q 038045 139 IYDFESSSRTGYRTVEVPSSRIVIIEGIYALS-EKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETS 217 (621)
Q Consensus 139 ~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLl-DEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~ 217 (621)
.|++..+.+..... .+....++|+||.+++. ++....+|..+|++++.+.++.|++.|+..++|.+.+.+...|....
T Consensus 81 ~~d~~~~~~~~~~~-~i~~~~~vI~eg~~~~~~~~~~~~~d~~i~v~~~~~~~~~R~~~Rd~~~rg~~~~~~~~~~~~~~ 159 (198)
T cd02023 81 VYDFKTHSRLKETV-TVYPADVIILEGILALYDKELRDLMDLKIFVDTDADVRLIRRIERDIVERGRDLESVINQYLKFV 159 (198)
T ss_pred ccccccCcccCCce-ecCCCCEEEEechhhccchhHHhhcCeEEEEECChhHHHHHHHHHHhhhcCCCHHHHHHHHHHhh
Confidence 99998877654323 56678999999999887 46778999999999999999999999998889999887777776554
Q ss_pred ccccccchhhhcCCCCceeeccCceeEEecCCCC
Q 038045 218 AKNLSVDQIKAVYPEGHTETMEQTYDIYLLPPGE 251 (621)
Q Consensus 218 ~R~v~~~d~iavl~eg~Ie~~~~~aDIYi~P~~~ 251 (621)
. ..+..++.+....+|++ ++.+.
T Consensus 160 ----~------~~~~~~i~~~~~~aD~i-i~~~~ 182 (198)
T cd02023 160 ----K------PMHEQFIEPTKRYADVI-IPRGG 182 (198)
T ss_pred ----h------hhHHHhCccchhceeEE-ECCCC
Confidence 1 24445677777889984 44443
No 355
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.70 E-value=6e-18 Score=208.56 Aligned_cols=192 Identities=13% Similarity=0.096 Sum_probs=151.6
Q ss_pred eeecceeeeeC--cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccc-------ccccc
Q 038045 37 PIQDPLSFEKG--FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNYND-------SSRVV 107 (621)
Q Consensus 37 ~v~~~lsf~~G--~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~~~-------~~R~I 107 (621)
...++++|.|. ...+|+++||+|++|+ .|||+|++|||||||+++|.++++..|.|.+||... .++.+
T Consensus 1218 I~f~nVs~~Y~~~~~~vL~~is~~I~~Ge---kvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~i 1294 (1490)
T TIGR01271 1218 MDVQGLTAKYTEAGRAVLQDLSFSVEGGQ---RVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKAF 1294 (1490)
T ss_pred EEEEEEEEEeCCCCcceeeccEEEEcCCC---EEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHhce
Confidence 45788888885 4689999999999999 899999999999999999999997789999999732 34579
Q ss_pred cccCCCCcccccchHHHHHHHHhcC---------CCcc-------Cc-cccccc----cCccCCceeecCCccEEEEecc
Q 038045 108 DGNFDDPRLTDYDTLLENVRDLREG---------KPVQ-------VP-IYDFES----SSRTGYRTVEVPSSRIVIIEGI 166 (621)
Q Consensus 108 g~vfQdp~l~d~~tV~enL~~L~~g---------k~V~-------~p-~yd~~~----~~rsggq~qrVa~ArVLIvEG~ 166 (621)
++++|+|.+|+ .|+++||...... +.+. .| .+|... ..+|+||+|+++.+|+++-++.
T Consensus 1295 s~IpQdp~LF~-GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ 1373 (1490)
T TIGR01271 1295 GVIPQKVFIFS-GTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAK 1373 (1490)
T ss_pred EEEeCCCccCc-cCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCC
Confidence 99999999997 4999999643210 0011 11 122222 2578999999999999999999
Q ss_pred eeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEE
Q 038045 167 YALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIY 245 (621)
Q Consensus 167 lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIY 245 (621)
++++||+++.+|.. ....+.+..+.. ..++|++.|+|++.... .+|++.+|++|.+...+++.+++
T Consensus 1374 ILlLDEaTS~lD~~-------Te~~I~~~L~~~-~~~~TvI~IaHRl~ti~-----~~DrIlvL~~G~ivE~g~p~~Ll 1439 (1490)
T TIGR01271 1374 ILLLDEPSAHLDPV-------TLQIIRKTLKQS-FSNCTVILSEHRVEALL-----ECQQFLVIEGSSVKQYDSIQKLL 1439 (1490)
T ss_pred EEEEeCCcccCCHH-------HHHHHHHHHHHH-cCCCEEEEEecCHHHHH-----hCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999972 234444444443 34799999999997664 46888899999999999988873
No 356
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.70 E-value=7.6e-18 Score=167.81 Aligned_cols=176 Identities=14% Similarity=0.120 Sum_probs=141.4
Q ss_pred cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccccc-------ccccccCCCCc--cc
Q 038045 48 FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDSS-------RVVDGNFDDPR--LT 117 (621)
Q Consensus 48 ~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~~-------R~Ig~vfQdp~--l~ 117 (621)
.+.+|++++++|.+|+ +|.|+|.||||||||++.|+|-+ |++|.|.+||....+ ..++-|||+|. .+
T Consensus 18 ek~~l~~~sL~I~~g~---FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~ 94 (263)
T COG1101 18 EKRALNGLSLEIAEGD---FVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTA 94 (263)
T ss_pred HHHHHhcCceeecCCc---eEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCc
Confidence 4678999999999999 99999999999999999999999 999999999974321 24677999996 69
Q ss_pred ccchHHHHHHHHh-cCCCcc------------------------CccccccccCccCCceeecCCccEEEEecceecccc
Q 038045 118 DYDTLLENVRDLR-EGKPVQ------------------------VPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEK 172 (621)
Q Consensus 118 d~~tV~enL~~L~-~gk~V~------------------------~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDE 172 (621)
+.+|+.||+.... +++... .+..+...+-+||||+|-+...-+.+-.|.++|+||
T Consensus 95 ~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDE 174 (263)
T COG1101 95 PELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDE 174 (263)
T ss_pred ccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecc
Confidence 9999999998643 222111 122344456779999999998889999999999999
Q ss_pred ccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCcee
Q 038045 173 LRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTE 236 (621)
Q Consensus 173 p~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie 236 (621)
=+.+|||+.. ...+..-.+.+.+.+.|...|||.++.+. .+.++..+++.|.|.
T Consensus 175 HTAALDPkta------~~vm~lT~kiV~~~klTtlMVTHnm~~Al----~yG~RlImLh~G~Iv 228 (263)
T COG1101 175 HTAALDPKTA------EFVMELTAKIVEEHKLTTLMVTHNMEDAL----DYGNRLIMLHSGKIV 228 (263)
T ss_pred hhhcCCcchH------HHHHHHHHHHHHhcCCceEEEeccHHHHH----hhCCeEEEEeCCeEE
Confidence 9999999742 23444455556788999999999999998 667777788888664
No 357
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.70 E-value=2.7e-17 Score=183.86 Aligned_cols=161 Identities=21% Similarity=0.192 Sum_probs=126.3
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccccccccccCCCCc
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDSSRVVDGNFDDPR 115 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~~R~Ig~vfQdp~ 115 (621)
....++++.+|...++++++|.+.+|+ .|||+|+||||||||+++|+|.+ |+.|.|..+.- -.++|..|++.
T Consensus 4 i~~~~ls~~~g~~~l~~~~~l~~~~G~---riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~----~~v~~l~Q~~~ 76 (530)
T COG0488 4 ITLENLSLAYGDRPLLENVSLTLNPGE---RIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG----LRVGYLSQEPP 76 (530)
T ss_pred EEEeeeEEeeCCceeecCCcceeCCCC---EEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC----ceEEEeCCCCC
Confidence 456789999999999999999999999 89999999999999999999999 99999988752 25788889988
Q ss_pred ccccchHHHHHHHHhc-----------------------------------C-----------CCccCccccccccCccC
Q 038045 116 LTDYDTLLENVRDLRE-----------------------------------G-----------KPVQVPIYDFESSSRTG 149 (621)
Q Consensus 116 l~d~~tV~enL~~L~~-----------------------------------g-----------k~V~~p~yd~~~~~rsg 149 (621)
+.+..|+.+.+..... + .....+..+.....+||
T Consensus 77 ~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSG 156 (530)
T COG0488 77 LDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSG 156 (530)
T ss_pred cCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCH
Confidence 8877777665532100 0 01122223556688999
Q ss_pred CceeecCCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHH
Q 038045 150 YRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQIS 214 (621)
Q Consensus 150 gq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~e 214 (621)
|++.++..|++++.+|.++|+|||++.||+ ..+.++..... ...| |++.|+||-.
T Consensus 157 G~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~-------~~i~WLe~~L~--~~~g-tviiVSHDR~ 211 (530)
T COG0488 157 GWRRRVALARALLEEPDLLLLDEPTNHLDL-------ESIEWLEDYLK--RYPG-TVIVVSHDRY 211 (530)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccCH-------HHHHHHHHHHH--hCCC-cEEEEeCCHH
Confidence 999999999999999999999999999997 22344444332 2346 9999999943
No 358
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.69 E-value=3e-17 Score=201.19 Aligned_cols=189 Identities=15% Similarity=0.060 Sum_probs=141.6
Q ss_pred eecceeeeeC----cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhCC----CeeEEEECCccc---cccc
Q 038045 38 IQDPLSFEKG----FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFMP----SIAVISMDNYND---SSRV 106 (621)
Q Consensus 38 v~~~lsf~~G----~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP----~sGvI~lDg~~~---~~R~ 106 (621)
..+++++.++ .+.+|++||+.+++|+ ++||+||||||||||+++|+|+.+ ..|.|.+||... .++.
T Consensus 761 ~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge---~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~ 837 (1394)
T TIGR00956 761 HWRNLTYEVKIKKEKRVILNNVDGWVKPGT---LTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRS 837 (1394)
T ss_pred EEEeeEEEecCCCCCcEeeeCCEEEEECCE---EEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcc
Confidence 3566666653 5689999999999999 999999999999999999999983 569999999743 2457
Q ss_pred ccccCCCCcccccchHHHHHHHHhc---CCCc----------------cC-cccccccc----CccCCceeecCCccEEE
Q 038045 107 VDGNFDDPRLTDYDTLLENVRDLRE---GKPV----------------QV-PIYDFESS----SRTGYRTVEVPSSRIVI 162 (621)
Q Consensus 107 Ig~vfQdp~l~d~~tV~enL~~L~~---gk~V----------------~~-p~yd~~~~----~rsggq~qrVa~ArVLI 162 (621)
++|++|++.+++..|++|++.+... .... .+ ...+...+ .+|+|+++++.++++++
T Consensus 838 i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~ 917 (1394)
T TIGR00956 838 IGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELV 917 (1394)
T ss_pred eeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHH
Confidence 8999999888999999999986321 1100 11 11222233 58999999999999999
Q ss_pred Eecc-eeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCC-ceeecc
Q 038045 163 IEGI-YALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEG-HTETME 239 (621)
Q Consensus 163 vEG~-lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg-~Ie~~~ 239 (621)
.+|. ++++|||++.||.. ....+.++.+.+.+.|.|++.++|+..... ....|++.++.+| .+...+
T Consensus 918 ~~P~~iLlLDEPTsgLD~~-------~~~~i~~~L~~la~~g~tvI~t~H~~~~~~---~~~~D~vl~L~~GG~iv~~G 986 (1394)
T TIGR00956 918 AKPKLLLFLDEPTSGLDSQ-------TAWSICKLMRKLADHGQAILCTIHQPSAIL---FEEFDRLLLLQKGGQTVYFG 986 (1394)
T ss_pred cCCCeEEEEcCCCCCCCHH-------HHHHHHHHHHHHHHcCCEEEEEecCCCHHH---HHhcCEEEEEcCCCEEEEEC
Confidence 9996 99999999999973 234555555666667999999999976431 0234556667665 554433
No 359
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.69 E-value=3.7e-17 Score=158.62 Aligned_cols=200 Identities=15% Similarity=0.110 Sum_probs=150.2
Q ss_pred eecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcc----------ccc--
Q 038045 38 IQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYN----------DSS-- 104 (621)
Q Consensus 38 v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~----------~~~-- 104 (621)
-+.+++..||.....++|||.+.+|| +.||+|.||||||||++||++.+ |+.|.|..+... ..+
T Consensus 8 ~V~~lsk~Yg~~~gc~~vsF~l~PGe---VLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR 84 (258)
T COG4107 8 SVSGLSKLYGPGKGCRDVSFDLYPGE---VLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERR 84 (258)
T ss_pred eehhhhhhhCCCcCccccceeecCCc---EEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHH
Confidence 34567777888888999999999999 99999999999999999999999 999999876421 111
Q ss_pred ----ccccccCCCCcc--cccchHHHH---------------H----HHHhcCCCccCccccccccCccCCceeecCCcc
Q 038045 105 ----RVVDGNFDDPRL--TDYDTLLEN---------------V----RDLREGKPVQVPIYDFESSSRTGYRTVEVPSSR 159 (621)
Q Consensus 105 ----R~Ig~vfQdp~l--~d~~tV~en---------------L----~~L~~gk~V~~p~yd~~~~~rsggq~qrVa~Ar 159 (621)
...|++.|+|.- -...+.-.| | ..+.+.-.+.....|..+...+||.+|++.+||
T Consensus 85 ~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiAR 164 (258)
T COG4107 85 RLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIAR 164 (258)
T ss_pred HHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHH
Confidence 136889898841 111111111 1 122223344555678888889999999999999
Q ss_pred EEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeecc
Q 038045 160 IVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETME 239 (621)
Q Consensus 160 VLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~ 239 (621)
.++..|.++++|||+..||..+ ..+++..+.-...+.|...+.|+|++..+. -.+++..+|..+.+.+.+
T Consensus 165 nLVt~PrLvfMDEPTGGLDVSV------QARLLDllrgLv~~l~la~viVTHDl~Var----Lla~rlmvmk~g~vve~G 234 (258)
T COG4107 165 NLVTRPRLVFMDEPTGGLDVSV------QARLLDLLRGLVRELGLAVVIVTHDLAVAR----LLADRLMVMKQGQVVESG 234 (258)
T ss_pred HhccCCceEEecCCCCCcchhh------HHHHHHHHHHHHHhcCceEEEEechhHHHH----HhhhcceeecCCCEeccc
Confidence 9999999999999999999754 335666666666778999999999998886 567788889999888877
Q ss_pred CceeEEecCCC
Q 038045 240 QTYDIYLLPPG 250 (621)
Q Consensus 240 ~~aDIYi~P~~ 250 (621)
-...+.--|..
T Consensus 235 LTDrvLDDP~h 245 (258)
T COG4107 235 LTDRVLDDPHH 245 (258)
T ss_pred cccccccCCCC
Confidence 66555333433
No 360
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.69 E-value=1.4e-17 Score=168.51 Aligned_cols=181 Identities=13% Similarity=0.125 Sum_probs=134.9
Q ss_pred eeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccccccccccCCCCcccccchHH
Q 038045 45 EKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDSSRVVDGNFDDPRLTDYDTLL 123 (621)
Q Consensus 45 ~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~~R~Ig~vfQdp~l~d~~tV~ 123 (621)
....+++|+||||++++|+ .+||+|+||||||||++.|+|.+ |++|.|.++|...+--.++.-|| +.+|.+
T Consensus 36 ~~~~~~aL~disf~i~~Ge---~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~-----pelTGr 107 (249)
T COG1134 36 KVAEFWALKDISFEIYKGE---RVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFD-----PELTGR 107 (249)
T ss_pred CcceEEEecCceEEEeCCC---EEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCC-----cccchH
Confidence 3567889999999999999 89999999999999999999999 99999999996433223333332 345777
Q ss_pred HHHHHHh--cC---CCc-----------cC-ccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCC
Q 038045 124 ENVRDLR--EG---KPV-----------QV-PIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGG 186 (621)
Q Consensus 124 enL~~L~--~g---k~V-----------~~-p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~ 186 (621)
+|+.... .| +.+ ++ ...+......|.|...|++-+-++-++|.+++.||..+.-|...
T Consensus 108 eNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F----- 182 (249)
T COG1134 108 ENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAF----- 182 (249)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHH-----
Confidence 7776522 11 000 00 01222235567778889999999999999999999999999632
Q ss_pred chHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 187 VHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 187 ~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
......|+. ...+.+.|++.|+|++.... .+||+...+..|.+...+++.++
T Consensus 183 -~~K~~~rl~-e~~~~~~tiv~VSHd~~~I~----~~Cd~~i~l~~G~i~~~G~~~~v 234 (249)
T COG1134 183 -QEKCLERLN-ELVEKNKTIVLVSHDLGAIK----QYCDRAIWLEHGQIRMEGSPEEV 234 (249)
T ss_pred -HHHHHHHHH-HHHHcCCEEEEEECCHHHHH----HhcCeeEEEeCCEEEEcCCHHHH
Confidence 112333333 33456799999999999988 89999999999999888877766
No 361
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.69 E-value=2e-17 Score=161.03 Aligned_cols=154 Identities=14% Similarity=0.100 Sum_probs=111.8
Q ss_pred cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCcccc--cccccccCCCCcccccchHHHH
Q 038045 48 FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNYNDS--SRVVDGNFDDPRLTDYDTLLEN 125 (621)
Q Consensus 48 ~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~~~~--~R~Ig~vfQdp~l~d~~tV~en 125 (621)
...+++++||++++|+ +++|+||||||||||+++|.+ ..|.+.+++.... ++.++|++| .+.
T Consensus 7 ~~~~l~~isl~i~~G~---~~~l~G~nG~GKSTLl~~il~---~~G~v~~~~~~~~~~~~~~~~~~q----------~~~ 70 (176)
T cd03238 7 NVHNLQNLDVSIPLNV---LVVVTGVSGSGKSTLVNEGLY---ASGKARLISFLPKFSRNKLIFIDQ----------LQF 70 (176)
T ss_pred eeeeecceEEEEcCCC---EEEEECCCCCCHHHHHHHHhh---cCCcEEECCcccccccccEEEEhH----------HHH
Confidence 3568999999999999 999999999999999999853 6788888875321 223556554 223
Q ss_pred HHHHhcCCCccCccccccccCccCCceeecCCccEEEEe--cceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcC
Q 038045 126 VRDLREGKPVQVPIYDFESSSRTGYRTVEVPSSRIVIIE--GIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVG 203 (621)
Q Consensus 126 L~~L~~gk~V~~p~yd~~~~~rsggq~qrVa~ArVLIvE--G~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG 203 (621)
+..+. ......+.....+++|+++++..+++++.+ |.++++|||+..+|.. ..+.+.++.+.+.+.|
T Consensus 71 l~~~~----L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~-------~~~~l~~~l~~~~~~g 139 (176)
T cd03238 71 LIDVG----LGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQ-------DINQLLEVIKGLIDLG 139 (176)
T ss_pred HHHcC----CCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHH-------HHHHHHHHHHHHHhCC
Confidence 32221 111113445678899999999999999999 9999999999999973 2344455555555679
Q ss_pred CCceehHhHHHHHhccccccchhhhcCCCC
Q 038045 204 QEPEEIIQQISETSAKNLSVDQIKAVYPEG 233 (621)
Q Consensus 204 ~Ti~~VtHd~eea~~R~v~~~d~iavl~eg 233 (621)
.|++.++|+.+... .+|++.++.++
T Consensus 140 ~tvIivSH~~~~~~-----~~d~i~~l~~g 164 (176)
T cd03238 140 NTVILIEHNLDVLS-----SADWIIDFGPG 164 (176)
T ss_pred CEEEEEeCCHHHHH-----hCCEEEEECCC
Confidence 99999999987642 35555555544
No 362
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.68 E-value=6.8e-18 Score=172.86 Aligned_cols=184 Identities=9% Similarity=0.081 Sum_probs=133.0
Q ss_pred eCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccccc------ccccccCCCCc---
Q 038045 46 KGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDSS------RVVDGNFDDPR--- 115 (621)
Q Consensus 46 ~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~~------R~Ig~vfQdp~--- 115 (621)
+..+.++.||||.|++|+ ++|++|+|||||||++++|.|++ |++|.|.+.|+.+.+ +.+++++...-
T Consensus 34 ~~~~~AVqdisf~IP~G~---ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~ 110 (325)
T COG4586 34 ERSIEAVQDISFEIPKGE---IVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLW 110 (325)
T ss_pred hhhhhhhheeeeecCCCc---EEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheee
Confidence 345669999999999999 99999999999999999999999 999999999996654 34555543321
Q ss_pred ----ccccchHHHHHHH------------HhcCCCccCccccccccCccCCceeecCCccEEEEecceeccccccCCCCe
Q 038045 116 ----LTDYDTLLENVRD------------LREGKPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDL 179 (621)
Q Consensus 116 ----l~d~~tV~enL~~------------L~~gk~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDl 179 (621)
+.+...+.+.|.. +.+--.+. +...+..+.+|-||+.++..+.+++-.|.++++|||+-.||.
T Consensus 111 Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~-~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV 189 (325)
T COG4586 111 WDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLE-GFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDV 189 (325)
T ss_pred eechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcch-hhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcch
Confidence 2222233333321 11100111 123344567888999999999999999999999999999997
Q ss_pred eEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCcee
Q 038045 180 RVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYD 243 (621)
Q Consensus 180 kV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aD 243 (621)
.. ..++.+-++...++++.|+...+|++.... ++|+++..++.|.+.--++++.
T Consensus 190 ~a------q~~ir~Flke~n~~~~aTVllTTH~~~di~----~lc~rv~~I~~Gqlv~dg~l~~ 243 (325)
T COG4586 190 NA------QANIREFLKEYNEERQATVLLTTHIFDDIA----TLCDRVLLIDQGQLVFDGTLAQ 243 (325)
T ss_pred hH------HHHHHHHHHHHHHhhCceEEEEecchhhHH----HhhhheEEeeCCcEeecccHHH
Confidence 32 223333344456778999999999998887 8888888888887665554443
No 363
>PRK13409 putative ATPase RIL; Provisional
Probab=99.68 E-value=1.1e-17 Score=189.49 Aligned_cols=175 Identities=14% Similarity=0.187 Sum_probs=129.7
Q ss_pred ceeeeeCc-EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEE-----------ECCccc-----
Q 038045 41 PLSFEKGF-FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVIS-----------MDNYND----- 102 (621)
Q Consensus 41 ~lsf~~G~-~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~-----------lDg~~~----- 102 (621)
.+++.||. ..+|++++ .+++|+ ++||+||||||||||+++|+|++ |+.|.|. ++|...
T Consensus 78 ~~~~~yg~~~~~L~~l~-~i~~Ge---v~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~ 153 (590)
T PRK13409 78 EPVHRYGVNGFKLYGLP-IPKEGK---VTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFK 153 (590)
T ss_pred CceEEecCCceeEecCC-cCCCCC---EEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHH
Confidence 47888886 36999999 899999 99999999999999999999998 8999997 776421
Q ss_pred ----ccccccccCC----CCcccccchHHHHHHHHhcC-------CCccCc-cccccccCccCCceeecCCccEEEEecc
Q 038045 103 ----SSRVVDGNFD----DPRLTDYDTLLENVRDLREG-------KPVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGI 166 (621)
Q Consensus 103 ----~~R~Ig~vfQ----dp~l~d~~tV~enL~~L~~g-------k~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~ 166 (621)
....+++.+| .|.++. .++.+++...... +.+.+. ..+.....+|+|++|+++++++++.+|.
T Consensus 154 ~~~~~~~~~~~~~q~~~~~p~~~~-~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~ 232 (590)
T PRK13409 154 KLYNGEIKVVHKPQYVDLIPKVFK-GKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDAD 232 (590)
T ss_pred HHhccCcceeecccchhhhhhhhc-chHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 1122344444 444332 3777777532100 012222 2456678899999999999999999999
Q ss_pred eeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCC
Q 038045 167 YALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPE 232 (621)
Q Consensus 167 lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~e 232 (621)
++++|||++.||+. ....+.++.+.+.+ |.+++.++|+++... .++|++.+++.
T Consensus 233 lllLDEPts~LD~~-------~~~~l~~~i~~l~~-g~tvIivsHd~~~l~----~~~D~v~vl~~ 286 (590)
T PRK13409 233 FYFFDEPTSYLDIR-------QRLNVARLIRELAE-GKYVLVVEHDLAVLD----YLADNVHIAYG 286 (590)
T ss_pred EEEEECCCCCCCHH-------HHHHHHHHHHHHHC-CCEEEEEeCCHHHHH----HhCCEEEEEeC
Confidence 99999999999973 23455555566666 999999999998876 55666666654
No 364
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.68 E-value=2.9e-17 Score=202.95 Aligned_cols=187 Identities=15% Similarity=0.123 Sum_probs=145.6
Q ss_pred eeecceeeeeCc--EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccccccccccCCC
Q 038045 37 PIQDPLSFEKGF--FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDSSRVVDGNFDD 113 (621)
Q Consensus 37 ~v~~~lsf~~G~--~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~~R~Ig~vfQd 113 (621)
...++++|.++. ..+|+++||.+++|+ +++|+||||||||||+++|+|++ |..|.|.++| .++|++|+
T Consensus 637 i~~~~~~~~~~~~~~~~l~~isl~i~~G~---~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------~i~yv~Q~ 707 (1522)
T TIGR00957 637 ITVHNATFTWARDLPPTLNGITFSIPEGA---LVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG------SVAYVPQQ 707 (1522)
T ss_pred EEEEEeEEEcCCCCCceeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC------EEEEEcCC
Confidence 456778888763 579999999999999 99999999999999999999999 8999999987 58999999
Q ss_pred CcccccchHHHHHHHHhcCC---------------Ccc-Ccc-----ccccccCccCCceeecCCccEEEEecceecccc
Q 038045 114 PRLTDYDTLLENVRDLREGK---------------PVQ-VPI-----YDFESSSRTGYRTVEVPSSRIVIIEGIYALSEK 172 (621)
Q Consensus 114 p~l~d~~tV~enL~~L~~gk---------------~V~-~p~-----yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDE 172 (621)
|.+++ .|+++||.+..... .+. .|. .......+||||+||++.||++..++.++++||
T Consensus 708 ~~l~~-~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDE 786 (1522)
T TIGR00957 708 AWIQN-DSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDD 786 (1522)
T ss_pred ccccC-CcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 98774 79999997532110 000 111 123345789999999999999999999999999
Q ss_pred ccCCCCeeEEecCCchHHHHHHHHHHH-HHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 173 LRPLLDLRVSVTGGVHFDLVKRVLRDI-QRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 173 p~s~LDlkV~Vd~~~d~~LirRI~Rdl-~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
|++.+|... ...+.+.+.+.. ..+|.|++.++|+..... .+|++.++.+|.+...+++.++
T Consensus 787 p~saLD~~~------~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~-----~~D~ii~l~~G~i~~~g~~~~l 848 (1522)
T TIGR00957 787 PLSAVDAHV------GKHIFEHVIGPEGVLKNKTRILVTHGISYLP-----QVDVIIVMSGGKISEMGSYQEL 848 (1522)
T ss_pred CccccCHHH------HHHHHHHHhhhhhhhcCCEEEEEeCChhhhh-----hCCEEEEecCCeEEeeCCHHHH
Confidence 999999732 223444443211 235789999999987654 3678888999998887777665
No 365
>PLN03140 ABC transporter G family member; Provisional
Probab=99.67 E-value=8.1e-17 Score=197.74 Aligned_cols=182 Identities=14% Similarity=0.105 Sum_probs=137.7
Q ss_pred cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CC---eeEEEECCccc----ccccccccCCCCccccc
Q 038045 48 FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PS---IAVISMDNYND----SSRVVDGNFDDPRLTDY 119 (621)
Q Consensus 48 ~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~---sGvI~lDg~~~----~~R~Ig~vfQdp~l~d~ 119 (621)
.+.+|+++|+.+++|+ +++|+||||||||||+++|+|.+ |+ .|.|.++|... .++.++|++|++.+++.
T Consensus 177 ~~~IL~~vs~~i~~Ge---~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~ 253 (1470)
T PLN03140 177 KLTILKDASGIIKPSR---MTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGV 253 (1470)
T ss_pred cceeccCCeEEEeCCe---EEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCc
Confidence 4679999999999999 99999999999999999999998 76 89999999732 24578999999999999
Q ss_pred chHHHHHHHHhcCCC--------------------------------------------------ccCcc------cccc
Q 038045 120 DTLLENVRDLREGKP--------------------------------------------------VQVPI------YDFE 143 (621)
Q Consensus 120 ~tV~enL~~L~~gk~--------------------------------------------------V~~p~------yd~~ 143 (621)
+|+.|++.+...-+. ..+.. -+..
T Consensus 254 lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~ 333 (1470)
T PLN03140 254 MTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEM 333 (1470)
T ss_pred CcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCcc
Confidence 999999987421000 00000 0112
Q ss_pred ccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHH-HHHhccccc
Q 038045 144 SSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQI-SETSAKNLS 222 (621)
Q Consensus 144 ~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~-eea~~R~v~ 222 (621)
....|||+++|+..+++++.+|.++++|||+..||.. ...++.+.+++..++.|.|++.++|+. .+.. .
T Consensus 334 ~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~------t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~----~ 403 (1470)
T PLN03140 334 IRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSS------TTYQIVKCLQQIVHLTEATVLMSLLQPAPETF----D 403 (1470)
T ss_pred ccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHH------HHHHHHHHHHHHHHhcCCEEEEEecCCCHHHH----H
Confidence 3568999999999999999999999999999999973 223344444443344689999999984 3443 4
Q ss_pred cchhhhcCCCCceeeccCce
Q 038045 223 VDQIKAVYPEGHTETMEQTY 242 (621)
Q Consensus 223 ~~d~iavl~eg~Ie~~~~~a 242 (621)
..|.+.++.+|.+...+...
T Consensus 404 lfD~vilL~~G~ivy~G~~~ 423 (1470)
T PLN03140 404 LFDDIILLSEGQIVYQGPRD 423 (1470)
T ss_pred HhheEEEeeCceEEEeCCHH
Confidence 56666777777765544433
No 366
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.67 E-value=2.5e-17 Score=178.40 Aligned_cols=195 Identities=17% Similarity=0.200 Sum_probs=149.7
Q ss_pred cceeeecceeeeeC-cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-------cc
Q 038045 34 EIVPIQDPLSFEKG-FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-------SS 104 (621)
Q Consensus 34 ~~~~v~~~lsf~~G-~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-------~~ 104 (621)
+-.....+++|.|. .+.+|+||||++.+|. +|+++||||+||||++|.|-.++ .++|.|.+||.+. .+
T Consensus 535 ~G~i~fsnvtF~Y~p~k~vl~disF~v~pGk---tvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLR 611 (790)
T KOG0056|consen 535 QGKIEFSNVTFAYDPGKPVLSDISFTVQPGK---TVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLR 611 (790)
T ss_pred CCeEEEEEeEEecCCCCceeecceEEecCCc---EEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHH
Confidence 34567888999875 6789999999999999 99999999999999999999999 7899999999842 23
Q ss_pred ccccccCCCCcccccchHHHHHHHHhcCC-----------------CccCc-ccccccc----CccCCceeecCCccEEE
Q 038045 105 RVVDGNFDDPRLTDYDTLLENVRDLREGK-----------------PVQVP-IYDFESS----SRTGYRTVEVPSSRIVI 162 (621)
Q Consensus 105 R~Ig~vfQdp~l~d~~tV~enL~~L~~gk-----------------~V~~p-~yd~~~~----~rsggq~qrVa~ArVLI 162 (621)
..+|.|+||.-+|+ +|+..||.+.+.+. -...| .|+-+.+ .+|||++|||++||.++
T Consensus 612 s~IGVVPQDtvLFN-dTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiL 690 (790)
T KOG0056|consen 612 SSIGVVPQDTVLFN-DTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTIL 690 (790)
T ss_pred HhcCcccCcceeec-ceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHh
Confidence 57999999988774 57777777654221 11122 2443333 45899999999999999
Q ss_pred EecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCce
Q 038045 163 IEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTY 242 (621)
Q Consensus 163 vEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~a 242 (621)
-.|.++|+||.++.||- +.+......+.|. -.++|.+.|-|++... .-+|.+.++.+|.|.+.+...
T Consensus 691 K~P~iIlLDEATSALDT------~tER~IQaaL~rl--ca~RTtIVvAHRLSTi-----vnAD~ILvi~~G~IvErG~He 757 (790)
T KOG0056|consen 691 KAPSIILLDEATSALDT------NTERAIQAALARL--CANRTTIVVAHRLSTI-----VNADLILVISNGRIVERGRHE 757 (790)
T ss_pred cCCcEEEEcchhhhcCC------ccHHHHHHHHHHH--hcCCceEEEeeeehhe-----ecccEEEEEeCCeEeecCcHH
Confidence 99999999999999995 3333222233332 3478999999998765 346777788889888888777
Q ss_pred eEE
Q 038045 243 DIY 245 (621)
Q Consensus 243 DIY 245 (621)
++.
T Consensus 758 eLl 760 (790)
T KOG0056|consen 758 ELL 760 (790)
T ss_pred HHH
Confidence 764
No 367
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.67 E-value=5.9e-17 Score=191.14 Aligned_cols=195 Identities=14% Similarity=0.068 Sum_probs=164.3
Q ss_pred ceeeecceeeeeCcEE-EEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc--------cc
Q 038045 35 IVPIQDPLSFEKGFFV-VIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND--------SS 104 (621)
Q Consensus 35 ~~~v~~~lsf~~G~~~-~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~--------~~ 104 (621)
...+.++++..++... |++++++.+++|| ++|+.|+|||||||++++|.|.. |++|.+.+.|+.. ..
T Consensus 563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~ge---cfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~ 639 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDGAVRGLSFAVPPGE---CFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVR 639 (885)
T ss_pred ceEEEcceeeeecchhhhhcceEEEecCCc---eEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhh
Confidence 4567888988888877 9999999999999 99999999999999999999999 9999999988732 23
Q ss_pred ccccccCCCCcccccchHHHHHHHHhcCCC----------------ccC-ccccccccCccCCceeecCCccEEEEecce
Q 038045 105 RVVDGNFDDPRLTDYDTLLENVRDLREGKP----------------VQV-PIYDFESSSRTGYRTVEVPSSRIVIIEGIY 167 (621)
Q Consensus 105 R~Ig~vfQdp~l~d~~tV~enL~~L~~gk~----------------V~~-p~yd~~~~~rsggq~qrVa~ArVLIvEG~l 167 (621)
+.+||.+|+..+++.+|.+|++.....-+. +.+ +..+...+..+||.+.++..+-+++..|.+
T Consensus 640 ~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~v 719 (885)
T KOG0059|consen 640 KQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSV 719 (885)
T ss_pred hhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCE
Confidence 569999999999999999999987542221 111 223344678899999999999999999999
Q ss_pred eccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCcee
Q 038045 168 ALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYD 243 (621)
Q Consensus 168 LLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aD 243 (621)
+++|||..++|| ...+.++.+.+.+++.|..++..+|.++|+. ..|++.++|..|...-.++..+
T Consensus 720 i~LDEPstGmDP-------~arr~lW~ii~~~~k~g~aiiLTSHsMeE~E----aLCtR~aImv~G~l~ciGs~q~ 784 (885)
T KOG0059|consen 720 ILLDEPSTGLDP-------KARRHLWDIIARLRKNGKAIILTSHSMEEAE----ALCTRTAIMVIGQLRCIGSPQE 784 (885)
T ss_pred EEecCCCCCCCH-------HHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH----HHhhhhheeecCeeEEecChHH
Confidence 999999999997 3467889999998888889999999999998 8999999999987665555443
No 368
>PLN03130 ABC transporter C family member; Provisional
Probab=99.66 E-value=6.3e-17 Score=200.64 Aligned_cols=186 Identities=15% Similarity=0.080 Sum_probs=144.4
Q ss_pred eeecceeeeeC---cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCe-eEEEECCcccccccccccC
Q 038045 37 PIQDPLSFEKG---FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSI-AVISMDNYNDSSRVVDGNF 111 (621)
Q Consensus 37 ~v~~~lsf~~G---~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~s-GvI~lDg~~~~~R~Ig~vf 111 (621)
...++++|.+. ...+|+++||.+++|+ .++|+||+|||||||++.|.|.+ |.. |.|.+. ..++|++
T Consensus 615 I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge---~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~------~~Iayv~ 685 (1622)
T PLN03130 615 ISIKNGYFSWDSKAERPTLSNINLDVPVGS---LVAIVGSTGEGKTSLISAMLGELPPRSDASVVIR------GTVAYVP 685 (1622)
T ss_pred eEEEeeEEEccCCCCCceeeceeEEecCCC---EEEEECCCCCCHHHHHHHHHHhhccCCCceEEEc------CeEEEEc
Confidence 45677888875 3569999999999999 99999999999999999999999 788 898753 4799999
Q ss_pred CCCcccccchHHHHHHHHhcCC---------------Cc-cCcc-cc----ccccCccCCceeecCCccEEEEecceecc
Q 038045 112 DDPRLTDYDTLLENVRDLREGK---------------PV-QVPI-YD----FESSSRTGYRTVEVPSSRIVIIEGIYALS 170 (621)
Q Consensus 112 Qdp~l~d~~tV~enL~~L~~gk---------------~V-~~p~-yd----~~~~~rsggq~qrVa~ArVLIvEG~lLLl 170 (621)
|+|.+|+ .|+++||.+..... .+ ..|. ++ ..-..+||||+||++.||++.-++.++++
T Consensus 686 Q~p~Lfn-gTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLL 764 (1622)
T PLN03130 686 QVSWIFN-ATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIF 764 (1622)
T ss_pred CccccCC-CCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 9999986 69999998643210 00 1121 11 12235789999999999999999999999
Q ss_pred ccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 171 EKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 171 DEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
|||++.+|..+ ....+.++.+.. .+|+|.+.|+|+.... ..+|.+.++.+|.+...+++.++
T Consensus 765 DEptSALD~~~------~~~I~~~~l~~~-l~~kTvIlVTH~l~~l-----~~aD~Ii~L~~G~i~e~Gt~~eL 826 (1622)
T PLN03130 765 DDPLSALDAHV------GRQVFDKCIKDE-LRGKTRVLVTNQLHFL-----SQVDRIILVHEGMIKEEGTYEEL 826 (1622)
T ss_pred CCCccccCHHH------HHHHHHHHhhHH-hcCCEEEEEECCHhHH-----HhCCEEEEEeCCEEEEeCCHHHH
Confidence 99999999732 223444444433 2589999999998654 44677788999999888887776
No 369
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.66 E-value=9.3e-17 Score=196.94 Aligned_cols=184 Identities=15% Similarity=0.057 Sum_probs=137.3
Q ss_pred CcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-----CCeeEEEECCccc------ccccccccCCCCc
Q 038045 47 GFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-----PSIAVISMDNYND------SSRVVDGNFDDPR 115 (621)
Q Consensus 47 G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-----P~sGvI~lDg~~~------~~R~Ig~vfQdp~ 115 (621)
..+.+|+++|+.+++|+ +++|+||||||||||+++|+|.. |..|.|.++|... .++.++|++|++.
T Consensus 72 ~~~~iL~~vs~~i~~Ge---~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~ 148 (1394)
T TIGR00956 72 KTFDILKPMDGLIKPGE---LTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDV 148 (1394)
T ss_pred CcceeeeCCEEEEECCE---EEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccc
Confidence 34679999999999999 99999999999999999999985 4789999999632 2235899999999
Q ss_pred ccccchHHHHHHHHhcCC-------Cc-----------------cCcc-cc-----ccccCccCCceeecCCccEEEEec
Q 038045 116 LTDYDTLLENVRDLREGK-------PV-----------------QVPI-YD-----FESSSRTGYRTVEVPSSRIVIIEG 165 (621)
Q Consensus 116 l~d~~tV~enL~~L~~gk-------~V-----------------~~p~-yd-----~~~~~rsggq~qrVa~ArVLIvEG 165 (621)
+++.+|+.|++.+...-+ .. .+.. .+ ......|||+++|+.++++++.+|
T Consensus 149 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p 228 (1394)
T TIGR00956 149 HFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGA 228 (1394)
T ss_pred cCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCC
Confidence 999999999998632100 00 0000 11 112458999999999999999999
Q ss_pred ceeccccccCCCCeeEEecCCchHHHHHHHHHHHH-HcCCCceehHhHH-HHHhccccccchhhhcCCCCceeeccCcee
Q 038045 166 IYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQ-RVGQEPEEIIQQI-SETSAKNLSVDQIKAVYPEGHTETMEQTYD 243 (621)
Q Consensus 166 ~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~-erG~Ti~~VtHd~-eea~~R~v~~~d~iavl~eg~Ie~~~~~aD 243 (621)
.++++|||++.||.. ....+.+ +.+.+. +.|.|++.++|+. .+.. ...|.+.++.+|.+...+...+
T Consensus 229 ~vlllDEPTsgLD~~------~~~~i~~-~L~~la~~~g~tvii~~Hq~~~~i~----~l~D~v~~L~~G~iv~~G~~~~ 297 (1394)
T TIGR00956 229 KIQCWDNATRGLDSA------TALEFIR-ALKTSANILDTTPLVAIYQCSQDAY----ELFDKVIVLYEGYQIYFGPADK 297 (1394)
T ss_pred CEEEEeCCCCCcCHH------HHHHHHH-HHHHHHHhcCCEEEEEecCCCHHHH----HhhceEEEEeCCeEEEECCHHH
Confidence 999999999999973 2223444 444444 4599999999995 4443 4566667777777655554443
Q ss_pred E
Q 038045 244 I 244 (621)
Q Consensus 244 I 244 (621)
+
T Consensus 298 ~ 298 (1394)
T TIGR00956 298 A 298 (1394)
T ss_pred H
Confidence 3
No 370
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.7e-16 Score=159.40 Aligned_cols=191 Identities=13% Similarity=0.112 Sum_probs=143.7
Q ss_pred eecceeeeeCc-EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC---CCeeEEEECCccc--------ccc
Q 038045 38 IQDPLSFEKGF-FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM---PSIAVISMDNYND--------SSR 105 (621)
Q Consensus 38 v~~~lsf~~G~-~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl---P~sGvI~lDg~~~--------~~R 105 (621)
-.++|...-+. +.+|+++||++++|+ +.+|.||||||||||+..|+|.- ++.|.|.+||..- .+.
T Consensus 5 ~I~dLhv~v~~~keILkgvnL~v~~GE---vhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~ 81 (251)
T COG0396 5 EIKDLHVEVEGKKEILKGVNLTVKEGE---VHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARA 81 (251)
T ss_pred EEeeeEEEecCchhhhcCcceeEcCCc---EEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhc
Confidence 34556555555 589999999999999 99999999999999999999976 5789999999732 123
Q ss_pred cccccCCCCcccccchHHHHHHHHhcC----CC---------------ccCcc-cc-cc-ccCccCCceeecCCccEEEE
Q 038045 106 VVDGNFDDPRLTDYDTLLENVRDLREG----KP---------------VQVPI-YD-FE-SSSRTGYRTVEVPSSRIVII 163 (621)
Q Consensus 106 ~Ig~vfQdp~l~d~~tV~enL~~L~~g----k~---------------V~~p~-yd-~~-~~~rsggq~qrVa~ArVLIv 163 (621)
.+..-||.|.-++-.++.+.|....+. .. +.++. |- +. ....|||++.|..+..++++
T Consensus 82 GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~l 161 (251)
T COG0396 82 GIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLL 161 (251)
T ss_pred CCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhc
Confidence 567889999999888888777642211 11 11111 11 11 23568999999999999999
Q ss_pred ecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCc
Q 038045 164 EGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQT 241 (621)
Q Consensus 164 EG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~ 241 (621)
+|.++++|||-+.||+ ...+.+.+..+.+++.|.++..|||...-.. ++. -|.+.+|.+|.|...+.+
T Consensus 162 ePkl~ILDE~DSGLDI-------dalk~V~~~i~~lr~~~~~~liITHy~rll~--~i~-pD~vhvl~~GrIv~sG~~ 229 (251)
T COG0396 162 EPKLAILDEPDSGLDI-------DALKIVAEGINALREEGRGVLIITHYQRLLD--YIK-PDKVHVLYDGRIVKSGDP 229 (251)
T ss_pred CCCEEEecCCCcCccH-------HHHHHHHHHHHHHhcCCCeEEEEecHHHHHh--hcC-CCEEEEEECCEEEecCCH
Confidence 9999999999999996 2356666777777788999999999865543 222 266777888888776655
No 371
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.65 E-value=4.3e-17 Score=201.04 Aligned_cols=174 Identities=14% Similarity=0.138 Sum_probs=136.6
Q ss_pred EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccccccccccCCCCcccccchHHHHHH
Q 038045 49 FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDSSRVVDGNFDDPRLTDYDTLLENVR 127 (621)
Q Consensus 49 ~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~~R~Ig~vfQdp~l~d~~tV~enL~ 127 (621)
..+|+++||++++|+ +++|+||||||||||+++|+|++ |..|.|.++| .++|++|+|.+++ .|+++||.
T Consensus 439 ~~~l~~i~l~i~~G~---~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g------~iayv~Q~~~l~~-~Ti~eNI~ 508 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQ---LLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG------RISFSPQTSWIMP-GTIKDNII 508 (1490)
T ss_pred CcceeeeEEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC------EEEEEeCCCccCC-ccHHHHHH
Confidence 468999999999999 99999999999999999999999 8999999998 5899999999987 49999998
Q ss_pred HHhcCCC------c----------cCcc-----ccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCC
Q 038045 128 DLREGKP------V----------QVPI-----YDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGG 186 (621)
Q Consensus 128 ~L~~gk~------V----------~~p~-----yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~ 186 (621)
+...... . ..|. .......+||||+||++.+|++..++.++++|||++.+|...
T Consensus 509 ~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~----- 583 (1490)
T TIGR01271 509 FGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVT----- 583 (1490)
T ss_pred hccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH-----
Confidence 6321100 0 0011 112235789999999999999999999999999999999742
Q ss_pred chHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 187 VHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 187 ~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
...+...+.+.+. +|.|++.++|++.... .+|++.++.+|.+...+.+.++
T Consensus 584 -~~~i~~~~l~~~~-~~~tvilvtH~~~~~~-----~ad~ii~l~~g~i~~~g~~~~l 634 (1490)
T TIGR01271 584 -EKEIFESCLCKLM-SNKTRILVTSKLEHLK-----KADKILLLHEGVCYFYGTFSEL 634 (1490)
T ss_pred -HHHHHHHHHHHHh-cCCeEEEEeCChHHHH-----hCCEEEEEECCEEEEEcCHHHH
Confidence 2234434333332 4899999999987653 3677888888888777766665
No 372
>PLN03140 ABC transporter G family member; Provisional
Probab=99.65 E-value=1e-16 Score=196.87 Aligned_cols=176 Identities=16% Similarity=0.081 Sum_probs=134.0
Q ss_pred CcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-C--CeeEEEECCcccc----cccccccCCCCccccc
Q 038045 47 GFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-P--SIAVISMDNYNDS----SRVVDGNFDDPRLTDY 119 (621)
Q Consensus 47 G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P--~sGvI~lDg~~~~----~R~Ig~vfQdp~l~d~ 119 (621)
+.+.+|++||+.+++|+ +++|+||||||||||+++|+|.. + ..|.|.++|.... ++.++|++|++.+++.
T Consensus 891 ~~~~iL~~vs~~i~~Ge---l~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~ 967 (1470)
T PLN03140 891 DRLQLLREVTGAFRPGV---LTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQ 967 (1470)
T ss_pred CCceEeeCcEEEEECCe---EEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCC
Confidence 34579999999999999 99999999999999999999987 3 4799999997432 3568999999999999
Q ss_pred chHHHHHHHHhc---CCC----------------ccCcc-ccccc-----cCccCCceeecCCccEEEEecceecccccc
Q 038045 120 DTLLENVRDLRE---GKP----------------VQVPI-YDFES-----SSRTGYRTVEVPSSRIVIIEGIYALSEKLR 174 (621)
Q Consensus 120 ~tV~enL~~L~~---gk~----------------V~~p~-yd~~~-----~~rsggq~qrVa~ArVLIvEG~lLLlDEp~ 174 (621)
.|+.|++.+... ... +.+.. .+... ..+|+|+++++.++++++.+|.++++|||+
T Consensus 968 lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPT 1047 (1470)
T PLN03140 968 VTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPT 1047 (1470)
T ss_pred CcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCC
Confidence 999999986321 111 01111 12222 468999999999999999999999999999
Q ss_pred CCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHH-HhccccccchhhhcCCC-Ccee
Q 038045 175 PLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISE-TSAKNLSVDQIKAVYPE-GHTE 236 (621)
Q Consensus 175 s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~ee-a~~R~v~~~d~iavl~e-g~Ie 236 (621)
+.||.. ....+.++.+.+.+.|.|++.++|+... .. ..+|++.++.+ |.+.
T Consensus 1048 sgLD~~-------~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~----~~~D~vllL~~gG~~v 1100 (1470)
T PLN03140 1048 SGLDAR-------AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF----EAFDELLLMKRGGQVI 1100 (1470)
T ss_pred CCCCHH-------HHHHHHHHHHHHHHCCCEEEEEeCCCCHHHH----HhCCEEEEEcCCCEEE
Confidence 999973 2344455555666779999999999752 22 34455566664 5543
No 373
>PLN03232 ABC transporter C family member; Provisional
Probab=99.65 E-value=9.3e-17 Score=198.27 Aligned_cols=187 Identities=14% Similarity=0.057 Sum_probs=142.3
Q ss_pred eeecceeeeeC---cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccccccccccCC
Q 038045 37 PIQDPLSFEKG---FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDSSRVVDGNFD 112 (621)
Q Consensus 37 ~v~~~lsf~~G---~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~~R~Ig~vfQ 112 (621)
...++++|.+. ...+|+++||++++|+ .++|+||+|||||||++.|.|.+ |..|.+. ..+..++|++|
T Consensus 615 I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge---~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~-----~~~~~Iayv~Q 686 (1495)
T PLN03232 615 ISIKNGYFSWDSKTSKPTLSDINLEIPVGS---LVAIVGGTGEGKTSLISAMLGELSHAETSSV-----VIRGSVAYVPQ 686 (1495)
T ss_pred EEEEeeEEEcCCCCCCceeeeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCcccCCCEE-----EecCcEEEEcC
Confidence 45677888875 3579999999999999 99999999999999999999999 7666442 23457999999
Q ss_pred CCcccccchHHHHHHHHhcCC---------------Cc-cCcc-ccc----cccCccCCceeecCCccEEEEecceeccc
Q 038045 113 DPRLTDYDTLLENVRDLREGK---------------PV-QVPI-YDF----ESSSRTGYRTVEVPSSRIVIIEGIYALSE 171 (621)
Q Consensus 113 dp~l~d~~tV~enL~~L~~gk---------------~V-~~p~-yd~----~~~~rsggq~qrVa~ArVLIvEG~lLLlD 171 (621)
+|.+|+ .|+++||.+..... .+ ..|. ++- .-..+||||+||++.||++.-++.++++|
T Consensus 687 ~p~Lf~-gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLD 765 (1495)
T PLN03232 687 VSWIFN-ATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFD 765 (1495)
T ss_pred cccccc-ccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 999986 69999998643110 00 1121 111 12357899999999999999999999999
Q ss_pred cccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 172 KLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 172 Ep~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
||++.+|... ......++.+.. ..|+|.+.|+|+.... ..+|.+.++.+|.+...+++.++
T Consensus 766 EptSaLD~~t------~~~I~~~~l~~~-l~~kT~IlvTH~~~~l-----~~aD~Ii~L~~G~i~~~Gt~~eL 826 (1495)
T PLN03232 766 DPLSALDAHV------AHQVFDSCMKDE-LKGKTRVLVTNQLHFL-----PLMDRIILVSEGMIKEEGTFAEL 826 (1495)
T ss_pred CCccccCHHH------HHHHHHHHhhhh-hcCCEEEEEECChhhH-----HhCCEEEEEeCCEEEEecCHHHH
Confidence 9999999732 223444444432 3689999999998654 45677788899999888887776
No 374
>PLN03073 ABC transporter F family; Provisional
Probab=99.64 E-value=1.1e-16 Score=185.15 Aligned_cols=184 Identities=15% Similarity=0.083 Sum_probs=126.3
Q ss_pred eeeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhh----CCCeeEEEECCcc----c-c---
Q 038045 36 VPIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNF----MPSIAVISMDNYN----D-S--- 103 (621)
Q Consensus 36 ~~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagL----lP~sGvI~lDg~~----~-~--- 103 (621)
....++++|.+|...+|+++||++.+|+ ++||+|+||||||||+++|+|. .|..|.|...+.. . .
T Consensus 177 ~I~i~nls~~y~~~~ll~~isl~i~~Ge---~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~ 253 (718)
T PLN03073 177 DIHMENFSISVGGRDLIVDASVTLAFGR---HYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQ 253 (718)
T ss_pred eEEEceEEEEeCCCEEEECCEEEECCCC---EEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHH
Confidence 3567789999988889999999999999 8999999999999999999984 3666777532211 0 0
Q ss_pred -------------cccccccCCCCccc----------------ccchHHHHHHH----Hhc--C-----------CCccC
Q 038045 104 -------------SRVVDGNFDDPRLT----------------DYDTLLENVRD----LRE--G-----------KPVQV 137 (621)
Q Consensus 104 -------------~R~Ig~vfQdp~l~----------------d~~tV~enL~~----L~~--g-----------k~V~~ 137 (621)
.+.+++++|++.+. +...+.+-+.. +.. . ..+.+
T Consensus 254 ~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl 333 (718)
T PLN03073 254 CVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSF 333 (718)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCC
Confidence 11245555543321 11111111111 100 0 00111
Q ss_pred --ccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHH
Q 038045 138 --PIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISE 215 (621)
Q Consensus 138 --p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~ee 215 (621)
...+.....+|+|+++++.++++++.+|.++++|||++.||+. ....+...+.+.|.|++.|+|+...
T Consensus 334 ~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~----------~~~~l~~~L~~~~~tviivsHd~~~ 403 (718)
T PLN03073 334 TPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLH----------AVLWLETYLLKWPKTFIVVSHAREF 403 (718)
T ss_pred ChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHH----------HHHHHHHHHHHcCCEEEEEECCHHH
Confidence 1134456789999999999999999999999999999999972 3333444445558899999999887
Q ss_pred HhccccccchhhhcCCCCcee
Q 038045 216 TSAKNLSVDQIKAVYPEGHTE 236 (621)
Q Consensus 216 a~~R~v~~~d~iavl~eg~Ie 236 (621)
.. .+++++..+..|.+.
T Consensus 404 l~----~~~d~i~~l~~g~i~ 420 (718)
T PLN03073 404 LN----TVVTDILHLHGQKLV 420 (718)
T ss_pred HH----HhCCEEEEEECCEEE
Confidence 76 566777777777664
No 375
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=1.8e-16 Score=155.14 Aligned_cols=165 Identities=16% Similarity=0.157 Sum_probs=128.7
Q ss_pred eecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc------ccccccc
Q 038045 38 IQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS------SRVVDGN 110 (621)
Q Consensus 38 v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~------~R~Ig~v 110 (621)
..+++++.+|...++.+++|++.+|+ ++-|.||||||||||+|+|+|++ |++|.|.++|.... .+..-|.
T Consensus 4 ~a~~L~~~R~e~~lf~~L~f~l~~Ge---~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yL 80 (209)
T COG4133 4 EAENLSCERGERTLFSDLSFTLNAGE---ALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYL 80 (209)
T ss_pred hhhhhhhccCcceeecceeEEEcCCC---EEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHh
Confidence 45678999999999999999999999 99999999999999999999999 99999999976321 1234455
Q ss_pred CCCCcccccchHHHHHHHHhc--CC-----------CccCccc-cccccCccCCceeecCCccEEEEecceeccccccCC
Q 038045 111 FDDPRLTDYDTLLENVRDLRE--GK-----------PVQVPIY-DFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPL 176 (621)
Q Consensus 111 fQdp~l~d~~tV~enL~~L~~--gk-----------~V~~p~y-d~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~ 176 (621)
--.+.+-..+|++||+.|+.. +. .+.+..+ |.....+|.||+.+++.+|.++....+-++|||+..
T Consensus 81 GH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~ta 160 (209)
T COG4133 81 GHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTA 160 (209)
T ss_pred hccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccc
Confidence 556777788999999999763 11 1222222 333578899999999999999999999999999999
Q ss_pred CCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhH
Q 038045 177 LDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQ 212 (621)
Q Consensus 177 LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd 212 (621)
+|. ....++..+...+..+|--++..+|+
T Consensus 161 LDk-------~g~a~l~~l~~~H~~~GGiVllttHq 189 (209)
T COG4133 161 LDK-------EGVALLTALMAAHAAQGGIVLLTTHQ 189 (209)
T ss_pred cCH-------HHHHHHHHHHHHHhcCCCEEEEecCC
Confidence 996 23455555555555565556666666
No 376
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.62 E-value=5.3e-16 Score=150.13 Aligned_cols=159 Identities=17% Similarity=0.208 Sum_probs=125.6
Q ss_pred EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECC---cc------------cccccccccCC
Q 038045 49 FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDN---YN------------DSSRVVDGNFD 112 (621)
Q Consensus 49 ~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg---~~------------~~~R~Ig~vfQ 112 (621)
..+++++||+++.|| ++.+-||||||||||+|+|-+.+ |+.|.|.+.. +. ..++.+||+.|
T Consensus 24 LpV~~~vslsV~aGE---CvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQ 100 (235)
T COG4778 24 LPVLRNVSLSVNAGE---CVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQ 100 (235)
T ss_pred eeeeeceeEEecCcc---EEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHH
Confidence 458999999999999 99999999999999999999999 9999997752 21 11245899998
Q ss_pred CCcccccchHHHHHHHHh--cC----------------CCccCccccccccCccCCceeecCCccEEEEecceecccccc
Q 038045 113 DPRLTDYDTLLENVRDLR--EG----------------KPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLR 174 (621)
Q Consensus 113 dp~l~d~~tV~enL~~L~--~g----------------k~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~ 174 (621)
.....|.....+.++... .+ -.+....|...+...|||++|+|.++|.+|+|-.++|+|||+
T Consensus 101 FLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPT 180 (235)
T COG4778 101 FLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPT 180 (235)
T ss_pred HHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCc
Confidence 877777766666665432 11 122233466677889999999999999999999999999999
Q ss_pred CCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHh
Q 038045 175 PLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETS 217 (621)
Q Consensus 175 s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~ 217 (621)
..||.+ .....-.+++..+.+|..++-|.||-+...
T Consensus 181 asLDa~-------Nr~vVveli~e~Ka~GaAlvGIFHDeevre 216 (235)
T COG4778 181 ASLDAT-------NRAVVVELIREAKARGAALVGIFHDEEVRE 216 (235)
T ss_pred cccccc-------chHHHHHHHHHHHhcCceEEEeeccHHHHH
Confidence 999974 234555667777889999999999965554
No 377
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.61 E-value=7.5e-17 Score=147.24 Aligned_cols=121 Identities=17% Similarity=0.235 Sum_probs=97.8
Q ss_pred EeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-------ccccccccCCCCcccccchHH
Q 038045 52 IRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-------SSRVVDGNFDDPRLTDYDTLL 123 (621)
Q Consensus 52 Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-------~~R~Ig~vfQdp~l~d~~tV~ 123 (621)
|++++|++++|+ +++|+|+||||||||+++|+|.. |..|.|.+++... ..+.+++++|++.+++..++.
T Consensus 1 L~~v~~~i~~g~---~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~ 77 (137)
T PF00005_consen 1 LKNVSLEIKPGE---IVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVR 77 (137)
T ss_dssp EEEEEEEEETTS---EEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHH
T ss_pred CCceEEEEcCCC---EEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 689999999999 99999999999999999999999 8999999998632 234689999998899888888
Q ss_pred HHHHH-----Hhc-C--CCccCccccccccCccCCceeecCCccEEEEecceeccccccC
Q 038045 124 ENVRD-----LRE-G--KPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRP 175 (621)
Q Consensus 124 enL~~-----L~~-g--k~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s 175 (621)
++... +.. - .......++.....+|+|+++++..+++++.++.++++|||++
T Consensus 78 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 78 ENESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cccccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 76321 111 1 1112223344458899999999999999999999999999974
No 378
>PTZ00243 ABC transporter; Provisional
Probab=99.61 E-value=3.2e-16 Score=193.98 Aligned_cols=180 Identities=17% Similarity=0.164 Sum_probs=138.9
Q ss_pred eeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccccccccccCCCCcccccchH
Q 038045 44 FEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDSSRVVDGNFDDPRLTDYDTL 122 (621)
Q Consensus 44 f~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~~R~Ig~vfQdp~l~d~~tV 122 (621)
|..+...+|+++||.+++|+ +++|+||||||||||+++|+|++ |..|.|.++ +.++|++|+|.+++ .|+
T Consensus 668 ~~~~~~~iL~~isl~i~~G~---~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~------~~i~yv~Q~~~l~~-~Tv 737 (1560)
T PTZ00243 668 FELEPKVLLRDVSVSVPRGK---LTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE------RSIAYVPQQAWIMN-ATV 737 (1560)
T ss_pred cccCCceeEeeeEEEECCCC---EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC------CeEEEEeCCCccCC-CcH
Confidence 33455679999999999999 99999999999999999999999 889999864 46999999998875 699
Q ss_pred HHHHHHHhcCC------Ccc----------Cc-----cccccccCccCCceeecCCccEEEEecceeccccccCCCCeeE
Q 038045 123 LENVRDLREGK------PVQ----------VP-----IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRV 181 (621)
Q Consensus 123 ~enL~~L~~gk------~V~----------~p-----~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV 181 (621)
.+||.+..... ... .| ..+.....+||||+|+++.+|+++.++.++++|||++.||...
T Consensus 738 ~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~ 817 (1560)
T PTZ00243 738 RGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHV 817 (1560)
T ss_pred HHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHH
Confidence 99997632110 000 01 1133456789999999999999999999999999999999742
Q ss_pred EecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEE
Q 038045 182 SVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIY 245 (621)
Q Consensus 182 ~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIY 245 (621)
...+.+.+.... ..|.|++.++|+..... .+|++.++.+|.+...+++.+++
T Consensus 818 ------~~~i~~~~~~~~-~~~~TvIlvTH~~~~~~-----~ad~ii~l~~G~i~~~G~~~~l~ 869 (1560)
T PTZ00243 818 ------GERVVEECFLGA-LAGKTRVLATHQVHVVP-----RADYVVALGDGRVEFSGSSADFM 869 (1560)
T ss_pred ------HHHHHHHHHHHh-hCCCEEEEEeCCHHHHH-----hCCEEEEEECCEEEEecCHHHHH
Confidence 122333332222 25899999999987763 46888889999888877777763
No 379
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=99.58 E-value=5.1e-15 Score=148.55 Aligned_cols=176 Identities=23% Similarity=0.316 Sum_probs=124.9
Q ss_pred CCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeE----EEECCccccc---ccccccC--CCCcccccchHHHHHHHHhc
Q 038045 62 NDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAV----ISMDNYNDSS---RVVDGNF--DDPRLTDYDTLLENVRDLRE 131 (621)
Q Consensus 62 Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGv----I~lDg~~~~~---R~Ig~vf--Qdp~l~d~~tV~enL~~L~~ 131 (621)
..+++++||+||||||||||++.|++.+ +..|. |++|+|+... +..++.. ..|..|+...+.+.+..++.
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~~~~~~d~~~~~~~l~~l~~ 109 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLDAHGLRPRKGAPETFDVAGLAALLRRLRA 109 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHHHHHhcccccccCCCCCCCHHHHHHHHHHHHc
Confidence 3457799999999999999999999999 55554 8999986542 2234433 34556776677777777777
Q ss_pred CC-CccCccccccccCccCCceeecCCccEEEEecceeccc-----cccCCCCeeEEecCCchHHHHHHHHHHHHHcCCC
Q 038045 132 GK-PVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSE-----KLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQE 205 (621)
Q Consensus 132 gk-~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlD-----Ep~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~T 205 (621)
+. .+..|.|++......++.....+..+++|+||.+++.+ .+...+|..+|++++.+..+.|...|. .+.|.+
T Consensus 110 ~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~~~~~l~~~~D~vi~v~~~~~~~~~R~~~R~-~~~g~s 188 (229)
T PRK09270 110 GDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFDFTIFLDAPAEVLRERLVARK-LAGGLS 188 (229)
T ss_pred CCCceecccCCcccCCCCCCceEecCCCCEEEEcCcceeeccccHHHHHhhCCEEEEEECCHHHHHHHHHHHH-HhcCCC
Confidence 76 78899999887665543322223578999999998875 466788999999999887665555554 467999
Q ss_pred ceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEEecCCC
Q 038045 206 PEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIYLLPPG 250 (621)
Q Consensus 206 i~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIYi~P~~ 250 (621)
.+.+.+.+.... . ....++.+....+|++ ++++
T Consensus 189 ~~~~~~~~~~~~----~-------~~~~~i~~~~~~ad~v-I~n~ 221 (229)
T PRK09270 189 PEAAEAFVLRND----G-------PNARLVLETSRPADLV-LEMT 221 (229)
T ss_pred HHHHHHHHHhcC----h-------HHHHHHHhcCCCCCEE-EEec
Confidence 888888776431 0 1113455666778874 4443
No 380
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.57 E-value=2.6e-15 Score=152.25 Aligned_cols=171 Identities=14% Similarity=0.086 Sum_probs=117.9
Q ss_pred ceeeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcc--------cccc
Q 038045 35 IVPIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYN--------DSSR 105 (621)
Q Consensus 35 ~~~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~--------~~~R 105 (621)
.....+++++.++.+.+|++||+.|++|+ --.|+||||||||||++++++.. |++|.+.+-|.. +.++
T Consensus 30 ~li~l~~v~v~r~gk~iL~~isW~V~~ge---~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk 106 (257)
T COG1119 30 PLIELKNVSVRRNGKKILGDLSWQVNPGE---HWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRK 106 (257)
T ss_pred ceEEecceEEEECCEeeccccceeecCCC---cEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHH
Confidence 33567889999999999999999999999 79999999999999999999999 788888887652 2234
Q ss_pred cccccCCCC--cccccchHHHHHH------------------------HHhcCCCccCccccccccCccCCceeecCCcc
Q 038045 106 VVDGNFDDP--RLTDYDTLLENVR------------------------DLREGKPVQVPIYDFESSSRTGYRTVEVPSSR 159 (621)
Q Consensus 106 ~Ig~vfQdp--~l~d~~tV~enL~------------------------~L~~gk~V~~p~yd~~~~~rsggq~qrVa~Ar 159 (621)
.+|++--.- ......++++.+. .+....... ..+.....+|-|+++++=++|
T Consensus 107 ~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~--la~r~~~~LS~Ge~rrvLiaR 184 (257)
T COG1119 107 RIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKH--LADRPFGSLSQGEQRRVLIAR 184 (257)
T ss_pred HhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhh--hccCchhhcCHhHHHHHHHHH
Confidence 566542100 0001111111111 011111011 123334677888999999999
Q ss_pred EEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHc--CCCceehHhHHHHHh
Q 038045 160 IVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRV--GQEPEEIIQQISETS 217 (621)
Q Consensus 160 VLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~er--G~Ti~~VtHd~eea~ 217 (621)
+++.+|.++++|||++.+|+. ....+..++.. +... +.+.++|+|.-+++-
T Consensus 185 ALv~~P~LLiLDEP~~GLDl~------~re~ll~~l~~-~~~~~~~~~ll~VtHh~eEi~ 237 (257)
T COG1119 185 ALVKDPELLILDEPAQGLDLI------AREQLLNRLEE-LAASPGAPALLFVTHHAEEIP 237 (257)
T ss_pred HHhcCCCEEEecCccccCChH------HHHHHHHHHHH-HhcCCCCceEEEEEcchhhcc
Confidence 999999999999999999973 22234444433 3333 667999999988874
No 381
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.2e-15 Score=163.63 Aligned_cols=191 Identities=17% Similarity=0.202 Sum_probs=149.6
Q ss_pred eeecceeeee-CcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-------ccccc
Q 038045 37 PIQDPLSFEK-GFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-------SSRVV 107 (621)
Q Consensus 37 ~v~~~lsf~~-G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-------~~R~I 107 (621)
....+++|.| +...+|+++||+++.|+ .++|+|+||+||||+++.|-.++ +++|.|.+||++. .++.+
T Consensus 263 v~F~~V~F~y~~~r~iL~~isf~i~~g~---tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aI 339 (497)
T COG5265 263 VAFINVSFAYDPRRPILNGISFTIPLGK---TVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAI 339 (497)
T ss_pred EEEEEEEeeccccchhhcCccccccCcc---EEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHh
Confidence 4566777776 57889999999999999 89999999999999999999999 9999999999842 24579
Q ss_pred cccCCCCcccccchHHHHHHHHhcCC----------C-------ccCc-ccccccc----CccCCceeecCCccEEEEec
Q 038045 108 DGNFDDPRLTDYDTLLENVRDLREGK----------P-------VQVP-IYDFESS----SRTGYRTVEVPSSRIVIIEG 165 (621)
Q Consensus 108 g~vfQdp~l~d~~tV~enL~~L~~gk----------~-------V~~p-~yd~~~~----~rsggq~qrVa~ArVLIvEG 165 (621)
|+++|+-.+|. +|...|+++.+... . ...| .|+-..+ ..+||++||++++|.++-+|
T Consensus 340 g~VPQDtvLFN-Dti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p 418 (497)
T COG5265 340 GIVPQDTVLFN-DTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNP 418 (497)
T ss_pred CcCcccceehh-hhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCC
Confidence 99999987774 67777877644210 0 0112 2444443 45899999999999999999
Q ss_pred ceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 166 IYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 166 ~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
.+++.||.++.||-. ..+.+++-.++. .+|.|...|-|++.... -+|.+.++++|.|.+.++..++
T Consensus 419 ~il~~deatsaldt~-------te~~iq~~l~~~-~~~rttlviahrlsti~-----~adeiivl~~g~i~erg~h~~l 484 (497)
T COG5265 419 PILILDEATSALDTH-------TEQAIQAALREV-SAGRTTLVIAHRLSTII-----DADEIIVLDNGRIVERGTHEEL 484 (497)
T ss_pred CEEEEehhhhHhhhh-------HHHHHHHHHHHH-hCCCeEEEEeehhhhcc-----CCceEEEeeCCEEEecCcHHHH
Confidence 999999999999963 234455545554 36899999999987664 3566778999999988887776
No 382
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=99.54 E-value=1.9e-14 Score=141.68 Aligned_cols=132 Identities=17% Similarity=0.256 Sum_probs=103.2
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccccccc------ccccCCCCcccccchHHHHHHHHhcCCCccCccc
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNYNDSSRV------VDGNFDDPRLTDYDTLLENVRDLREGKPVQVPIY 140 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~~~~~R~------Ig~vfQdp~l~d~~tV~enL~~L~~gk~V~~p~y 140 (621)
+|||.|++|||||||++.|+..++....|++|+|+..... --+.|+.|..+|...+.+.|..++.++.+..+.+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~L~~l~~~~~~~~~~~ 80 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKPEDEIPVDENGFKQWDVLEALDMEAMMSTLDYWRETGHFPKFLR 80 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCCcccCChHhhcCCCCCCcccccHHHHHHHHHHHHcCCCccCccc
Confidence 5899999999999999999999867889999999654321 1257889999999999999999998876555544
Q ss_pred cccccCcc-------------CCceeecCCccEEEEecceecc-ccccCCCCeeEEecCCchHHHHHHHHHH
Q 038045 141 DFESSSRT-------------GYRTVEVPSSRIVIIEGIYALS-EKLRPLLDLRVSVTGGVHFDLVKRVLRD 198 (621)
Q Consensus 141 d~~~~~rs-------------ggq~qrVa~ArVLIvEG~lLLl-DEp~s~LDlkV~Vd~~~d~~LirRI~Rd 198 (621)
+....... ......+...+++|+||.+++. +++.+.+|++||++++.+.++.|++.|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iViVEG~~l~~~~~l~~l~D~~Ifvd~~~d~~~~Rr~~R~ 152 (187)
T cd02024 81 SHGNENDPEKEFIEDAQIEETKADLLGAEDLHILIVDGFLLYNYKPLVDLFDIRYFLRVPYETCKRRREART 152 (187)
T ss_pred CccccccccccccchhhhhhccccccccCCCcEEEEechHhcCCHHHHhhcCceeEecCCHHHHHHHHHHcC
Confidence 44322111 0122345678899999999888 4788999999999999999888887765
No 383
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.54 E-value=9.5e-15 Score=163.56 Aligned_cols=166 Identities=11% Similarity=0.075 Sum_probs=126.8
Q ss_pred cceeeecceeeeeCc-EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccccccccccC
Q 038045 34 EIVPIQDPLSFEKGF-FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDSSRVVDGNF 111 (621)
Q Consensus 34 ~~~~v~~~lsf~~G~-~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~~R~Ig~vf 111 (621)
......+++++.++. +.+++++||.+.+|+ .|||+||||+|||||++.|+|.. |.+|.|.+... -.+||..
T Consensus 319 ~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~---riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~----v~igyf~ 391 (530)
T COG0488 319 KLVLEFENVSKGYDGGRLLLKDLSFRIDRGD---RIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET----VKIGYFD 391 (530)
T ss_pred CeeEEEeccccccCCCceeecCceEEecCCC---EEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc----eEEEEEE
Confidence 345567889998855 699999999999999 79999999999999999999988 88999987642 2467777
Q ss_pred CCCcc-cccchHHHHHHHHhcCC-C-----------ccCccccccccCccCCceeecCCccEEEEecceeccccccCCCC
Q 038045 112 DDPRL-TDYDTLLENVRDLREGK-P-----------VQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLD 178 (621)
Q Consensus 112 Qdp~l-~d~~tV~enL~~L~~gk-~-----------V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LD 178 (621)
|+... .+..++.+.+....... . ..-.........+|||++.|+..++++.-+|.++++|||++.||
T Consensus 392 Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLD 471 (530)
T COG0488 392 QHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLD 471 (530)
T ss_pred ehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCC
Confidence 77642 35556777766543211 0 11111233456789999999999999999999999999999999
Q ss_pred eeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHH
Q 038045 179 LRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISET 216 (621)
Q Consensus 179 lkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea 216 (621)
+ +.+..+...+....-|++.|+||-.-.
T Consensus 472 i----------~s~~aLe~aL~~f~Gtvl~VSHDr~Fl 499 (530)
T COG0488 472 I----------ESLEALEEALLDFEGTVLLVSHDRYFL 499 (530)
T ss_pred H----------HHHHHHHHHHHhCCCeEEEEeCCHHHH
Confidence 7 344555555666667999999996544
No 384
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.53 E-value=7e-15 Score=167.53 Aligned_cols=156 Identities=17% Similarity=0.154 Sum_probs=122.0
Q ss_pred cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhCC----CeeEEEECCccc----ccccccccCCCCccccc
Q 038045 48 FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFMP----SIAVISMDNYND----SSRVVDGNFDDPRLTDY 119 (621)
Q Consensus 48 ~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP----~sGvI~lDg~~~----~~R~Ig~vfQdp~l~d~ 119 (621)
.+.+|++|+..+++|+ +.||.||||||||||+++|+|..+ ..|.|.++|... .++..|||.|+..+++.
T Consensus 42 ~k~iL~~vsg~~~~Ge---l~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~ 118 (613)
T KOG0061|consen 42 TKTILKGVSGTAKPGE---LLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPT 118 (613)
T ss_pred cceeeeCcEEEEecCe---EEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEccccccccc
Confidence 5889999999999999 999999999999999999999883 479999999532 23568999999999999
Q ss_pred chHHHHHHHHh---cCCCcc----------------Cc-cccccc-----cCccCCceeecCCccEEEEecceecccccc
Q 038045 120 DTLLENVRDLR---EGKPVQ----------------VP-IYDFES-----SSRTGYRTVEVPSSRIVIIEGIYALSEKLR 174 (621)
Q Consensus 120 ~tV~enL~~L~---~gk~V~----------------~p-~yd~~~-----~~rsggq~qrVa~ArVLIvEG~lLLlDEp~ 174 (621)
+||+|.+.+-. -..... +. .-|... ...+||++.|+..+-=++.+|.++++|||+
T Consensus 119 LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPT 198 (613)
T KOG0061|consen 119 LTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPT 198 (613)
T ss_pred ccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCC
Confidence 99999998632 111100 00 011111 347889999999999999999999999999
Q ss_pred CCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHH
Q 038045 175 PLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQI 213 (621)
Q Consensus 175 s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~ 213 (621)
+.||-.. ....+ ++.+.+.+.|+|++...||-
T Consensus 199 SGLDS~s------A~~vv-~~Lk~lA~~grtVi~tIHQP 230 (613)
T KOG0061|consen 199 SGLDSFS------ALQVV-QLLKRLARSGRTVICTIHQP 230 (613)
T ss_pred CCcchhh------HHHHH-HHHHHHHhCCCEEEEEEeCC
Confidence 9999642 12333 44444556699999999994
No 385
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.51 E-value=3.7e-15 Score=149.54 Aligned_cols=172 Identities=12% Similarity=0.057 Sum_probs=103.2
Q ss_pred eeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHH-HHHHhhC---------CC----eeEEEECCcc-ccccccc
Q 038045 44 FEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFT-EKILNFM---------PS----IAVISMDNYN-DSSRVVD 108 (621)
Q Consensus 44 f~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLl-r~LagLl---------P~----sGvI~lDg~~-~~~R~Ig 108 (621)
|......+|+++||++++|+ ++||+|+||||||||+ ..|...- +. .+.+..-... .......
T Consensus 3 ~~~~~~~~l~~vsl~i~~Ge---~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (226)
T cd03270 3 VRGAREHNLKNVDVDIPRNK---LVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPA 79 (226)
T ss_pred eccchhhccccceeecCCCc---EEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCccccccccCCCce
Confidence 33445679999999999999 9999999999999996 3332100 00 0000000000 0001112
Q ss_pred ccCCCCc--ccccchHH---HHHHHHh---cC----------CCccCc--cccccccCccCCceeecCCccEEEEec--c
Q 038045 109 GNFDDPR--LTDYDTLL---ENVRDLR---EG----------KPVQVP--IYDFESSSRTGYRTVEVPSSRIVIIEG--I 166 (621)
Q Consensus 109 ~vfQdp~--l~d~~tV~---enL~~L~---~g----------k~V~~p--~yd~~~~~rsggq~qrVa~ArVLIvEG--~ 166 (621)
+.++++. ..+..++. +....+. .. ..+.+. ..+.....+|+|++|++..+++++.+| .
T Consensus 80 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~ 159 (226)
T cd03270 80 IAIDQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGV 159 (226)
T ss_pred EEecCCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCC
Confidence 2222221 11222211 1111110 00 011222 245567889999999999999999998 5
Q ss_pred eeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcC
Q 038045 167 YALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVY 230 (621)
Q Consensus 167 lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl 230 (621)
++++|||+..+|+. ..+.+.++.+.+.+.|.|++.++|+++.. ..+|++.++
T Consensus 160 llllDEPt~gLD~~-------~~~~l~~~l~~~~~~g~tii~itH~~~~~-----~~~d~i~~l 211 (226)
T cd03270 160 LYVLDEPSIGLHPR-------DNDRLIETLKRLRDLGNTVLVVEHDEDTI-----RAADHVIDI 211 (226)
T ss_pred EEEEeCCccCCCHH-------HHHHHHHHHHHHHhCCCEEEEEEeCHHHH-----HhCCEEEEe
Confidence 99999999999973 23344444555556799999999999764 347777777
No 386
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.49 E-value=7.5e-15 Score=176.85 Aligned_cols=197 Identities=15% Similarity=0.169 Sum_probs=151.0
Q ss_pred eeecceeeeeC--cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCc-------cccccc
Q 038045 37 PIQDPLSFEKG--FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNY-------NDSSRV 106 (621)
Q Consensus 37 ~v~~~lsf~~G--~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~-------~~~~R~ 106 (621)
...++++..|. .-.||++|||+|++|| -|||+|..|||||||+.+|-.+. |..|.|.+||. ++.+++
T Consensus 1139 I~f~~~~~RYrp~lp~VLk~is~~I~p~e---KVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsr 1215 (1381)
T KOG0054|consen 1139 IEFEDLSLRYRPNLPLVLKGISFTIKPGE---KVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSR 1215 (1381)
T ss_pred EEEEEeEEEeCCCCcchhcCceEEEcCCc---eEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhc
Confidence 45666666655 4589999999999999 79999999999999999999998 89999999987 345678
Q ss_pred ccccCCCCcccccchHHHHHHHHhcC---------------CCc-cCcc-cccc----ccCccCCceeecCCccEEEEec
Q 038045 107 VDGNFDDPRLTDYDTLLENVRDLREG---------------KPV-QVPI-YDFE----SSSRTGYRTVEVPSSRIVIIEG 165 (621)
Q Consensus 107 Ig~vfQdp~l~d~~tV~enL~~L~~g---------------k~V-~~p~-yd~~----~~~rsggq~qrVa~ArVLIvEG 165 (621)
++.+||+|-+|. -|++.||.-..+. ..+ ..|. .|.. -...|-||+|-++.+|+++-+.
T Consensus 1216 lsIIPQdPvLFs-GTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~s 1294 (1381)
T KOG0054|consen 1216 LSIIPQDPVLFS-GTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKS 1294 (1381)
T ss_pred CeeeCCCCceec-CccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccC
Confidence 999999998774 3555555422110 001 1121 2222 2356778999999999999999
Q ss_pred ceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEE
Q 038045 166 IYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIY 245 (621)
Q Consensus 166 ~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIY 245 (621)
.++++||.+...|.. ...++++.+|.. =+++|+..|-|++..++ -+|++.||+.|.+.+.++++.++
T Consensus 1295 kILvLDEATAsVD~~-------TD~lIQ~tIR~~-F~dcTVltIAHRl~TVm-----d~DrVlVld~G~v~EfdsP~~Ll 1361 (1381)
T KOG0054|consen 1295 KILVLDEATASVDPE-------TDALIQKTIREE-FKDCTVLTIAHRLNTVM-----DSDRVLVLDAGRVVEFDSPAELL 1361 (1381)
T ss_pred CEEEEecccccCChH-------HHHHHHHHHHHH-hcCCeEEEEeeccchhh-----hcCeEEEeeCCeEeecCChHHHH
Confidence 999999999999962 235777776653 35899999999998876 36888999999999999998885
Q ss_pred ecCCC
Q 038045 246 LLPPG 250 (621)
Q Consensus 246 i~P~~ 250 (621)
-.+.+
T Consensus 1362 ~~~~S 1366 (1381)
T KOG0054|consen 1362 SDKDS 1366 (1381)
T ss_pred hCCcc
Confidence 34333
No 387
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=99.47 E-value=3.9e-13 Score=138.44 Aligned_cols=149 Identities=23% Similarity=0.382 Sum_probs=117.1
Q ss_pred eCCCcceEEEEECCCCCcHHHHHHHHHhhC---C---CeeEEEECCcccccc-----cccccCCCCcccccchHHHHHHH
Q 038045 60 QKNDGIILIGLAGPSGAGKTIFTEKILNFM---P---SIAVISMDNYNDSSR-----VVDGNFDDPRLTDYDTLLENVRD 128 (621)
Q Consensus 60 ~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl---P---~sGvI~lDg~~~~~R-----~Ig~vfQdp~l~d~~tV~enL~~ 128 (621)
..++.|+||||+|+.|+||||+++.++.++ | ..-.|.+|||+.... .+----..|..||...+.+.+..
T Consensus 77 ~~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~~~glm~rKGfPeSyD~~~ll~fl~~ 156 (283)
T COG1072 77 NNQQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLDERGLMARKGFPESYDVAALLRFLSD 156 (283)
T ss_pred CCCCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhHhhhccccccCCCCccccHHHHHHHHHH
Confidence 456779999999999999999999999887 3 367899999964432 11112235788999999999999
Q ss_pred HhcCCC-ccCccccccccCccCCceeecCCccEEEEecceecccc-----ccCCCCeeEEecCCchHHHHHHHHHHHHHc
Q 038045 129 LREGKP-VQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEK-----LRPLLDLRVSVTGGVHFDLVKRVLRDIQRV 202 (621)
Q Consensus 129 L~~gk~-V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDE-----p~s~LDlkV~Vd~~~d~~LirRI~Rdl~er 202 (621)
++.+.+ +..|.|++.......++.+.+...++||+||.++|.++ +.+.+|+.+|||++.+. +.+++.......
T Consensus 157 vK~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~~p~~~~sdffDfSIyvDa~~~~-le~wyi~Rfl~~ 235 (283)
T COG1072 157 VKAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFDFSIYVDADEEL-LEERYIERFLKF 235 (283)
T ss_pred HhcCCCccccccccccccccCCCceeecCCCCEEEEechhhhcCCCccccccccceEEEEecCCHHH-HHHHHHHHHHhc
Confidence 997665 99999999999999999999999999999999999865 45789999999998765 334444444455
Q ss_pred CCCceeh
Q 038045 203 GQEPEEI 209 (621)
Q Consensus 203 G~Ti~~V 209 (621)
|.+....
T Consensus 236 g~~a~~~ 242 (283)
T COG1072 236 GLTAFED 242 (283)
T ss_pred ccchhhC
Confidence 6655443
No 388
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.45 E-value=1.9e-14 Score=173.46 Aligned_cols=176 Identities=16% Similarity=0.178 Sum_probs=140.1
Q ss_pred cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccccccccccCCCCcccccchHHHHH
Q 038045 48 FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDSSRVVDGNFDDPRLTDYDTLLENV 126 (621)
Q Consensus 48 ~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~~R~Ig~vfQdp~l~d~~tV~enL 126 (621)
....|+||||.+++|+ .++|+|+.|||||+|+.+|.|.+ ..+|.|.+.|- ++|++|.|.+++ .|++|||
T Consensus 533 ~~~tL~dIn~~i~~G~---lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs------iaYv~Q~pWI~n-gTvreNI 602 (1381)
T KOG0054|consen 533 PEPTLKDINFEIKKGQ---LVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS------VAYVPQQPWIQN-GTVRENI 602 (1381)
T ss_pred CcccccceeEEecCCC---EEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe------EEEeccccHhhC-CcHHHhh
Confidence 3448999999999999 99999999999999999999999 67899999984 899999998774 6899999
Q ss_pred HHHhcCC---------------Ccc-Ccccc-----ccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecC
Q 038045 127 RDLREGK---------------PVQ-VPIYD-----FESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTG 185 (621)
Q Consensus 127 ~~L~~gk---------------~V~-~p~yd-----~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~ 185 (621)
-+...-. +.+ .|.-| .+--.+||||++|++.||++--+..+.|+|+|++.+|..+
T Consensus 603 LFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahv---- 678 (1381)
T KOG0054|consen 603 LFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHV---- 678 (1381)
T ss_pred hcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhh----
Confidence 7643210 000 11111 1223578999999999999999999999999999999743
Q ss_pred CchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEE
Q 038045 186 GVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIY 245 (621)
Q Consensus 186 ~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIY 245 (621)
...+..++.+.. -+++|.+.|||+..-. .-+|.+.+|.+|.|.+.+++.++.
T Consensus 679 --g~~if~~ci~~~-L~~KT~ILVTHql~~L-----~~ad~Iivl~~G~I~~~Gty~el~ 730 (1381)
T KOG0054|consen 679 --GKHIFEECIRGL-LRGKTVILVTHQLQFL-----PHADQIIVLKDGKIVESGTYEELL 730 (1381)
T ss_pred --hHHHHHHHHHhh-hcCCEEEEEeCchhhh-----hhCCEEEEecCCeEecccCHHHHH
Confidence 345677776554 3589999999975533 456778899999999999998873
No 389
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.43 E-value=3.5e-14 Score=151.55 Aligned_cols=186 Identities=13% Similarity=0.096 Sum_probs=130.8
Q ss_pred eecceeeeeCcE-EEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc-------ccccc
Q 038045 38 IQDPLSFEKGFF-VVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS-------SRVVD 108 (621)
Q Consensus 38 v~~~lsf~~G~~-~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~-------~R~Ig 108 (621)
..+++.|.|-.. --+..||++|+.|| +|-|+|.||||||||++.|.|++ |.+|.|.+||.... +.-+.
T Consensus 324 elrnvrfay~~~~FhvgPiNl~ikrGe---lvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfS 400 (546)
T COG4615 324 ELRNVRFAYQDNAFHVGPINLTIKRGE---LVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFS 400 (546)
T ss_pred eeeeeeeccCcccceecceeeEEecCc---EEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHH
Confidence 345555554432 24889999999999 99999999999999999999999 99999999997422 22356
Q ss_pred ccCCCCcccccch----------HHHHHHHHhcCCCccCccccccccCccCCceeecCCccEEEEecceeccccccCCCC
Q 038045 109 GNFDDPRLTDYDT----------LLENVRDLREGKPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLD 178 (621)
Q Consensus 109 ~vfQdp~l~d~~t----------V~enL~~L~~gk~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LD 178 (621)
.+|.|+.+||... +...++.+.-...+.+..-.+..-++|.||+.|++.--+++-|-.+++.||....-|
T Consensus 401 avFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQD 480 (546)
T COG4615 401 AVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQD 480 (546)
T ss_pred HHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCC
Confidence 6888877775432 222333333223344444445566788899999987777777777888888877777
Q ss_pred eeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceee
Q 038045 179 LRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTET 237 (621)
Q Consensus 179 lkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~ 237 (621)
|.. .......+.-++++.|+|+..|+|| +++...+|+...+.+|.+..
T Consensus 481 PaF------RR~FY~~lLp~LK~qGKTI~aIsHD-----d~YF~~ADrll~~~~G~~~e 528 (546)
T COG4615 481 PAF------RREFYQVLLPLLKEQGKTIFAISHD-----DHYFIHADRLLEMRNGQLSE 528 (546)
T ss_pred hHH------HHHHHHHHhHHHHHhCCeEEEEecC-----chhhhhHHHHHHHhcCceee
Confidence 632 2335566777789999999999999 22334455556666676543
No 390
>PRK06696 uridine kinase; Validated
Probab=99.43 E-value=6.3e-13 Score=132.96 Aligned_cols=153 Identities=16% Similarity=0.257 Sum_probs=108.7
Q ss_pred CCcceEEEEECCCCCcHHHHHHHHHhhCC--Ce--eEEEECCccccccc-ccccCCCC-----cccccchHHHHHHHHh-
Q 038045 62 NDGIILIGLAGPSGAGKTIFTEKILNFMP--SI--AVISMDNYNDSSRV-VDGNFDDP-----RLTDYDTLLENVRDLR- 130 (621)
Q Consensus 62 Ge~~iIVGI~GpSGSGKSTLlr~LagLlP--~s--GvI~lDg~~~~~R~-Ig~vfQdp-----~l~d~~tV~enL~~L~- 130 (621)
+.++++|||.|++|||||||++.|+..++ +. -.+++|+|+..... ....+.++ ..+++..+.+.|..+.
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~~~~r~~~~~~~~~g~~~~~~d~~~L~~~l~~~l~ 98 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPRVIRYRRGRESAEGYYEDAYDYTALRRLLLDPLG 98 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCCHHHHHHcCCCChhhcCccccCHHHHHHHHHhhcc
Confidence 45688999999999999999999999883 22 33569999755321 11112222 4677778888877644
Q ss_pred cC--CCccCccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCcee
Q 038045 131 EG--KPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEE 208 (621)
Q Consensus 131 ~g--k~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~ 208 (621)
.+ ..+..|.|++..+.........++...++|+||.+++.++....+|.+||++++.+.++.|.+.|+...+|. ...
T Consensus 99 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~vviveg~~l~~~~~~~~~d~~i~v~~~~e~~~~R~~~Rd~~~~g~-~~~ 177 (223)
T PRK06696 99 PNGDRQYRTASHDLKTDIPVHNPPLLAAPNAVLIVDGTFLLRPELRDLWDYKIFLDTDFEVSRRRGAKRDTEAFGS-YEE 177 (223)
T ss_pred CCCceeEeeeeeccccCcccCCCceecCCCCEEEEecHHHhhhhHHhhCCEEEEEECCHHHHHHHHHHhhhhhhCC-chH
Confidence 22 235566777766554433344456678999999998888888999999999999999998888888777774 333
Q ss_pred hHhHHHH
Q 038045 209 IIQQISE 215 (621)
Q Consensus 209 VtHd~ee 215 (621)
+...+..
T Consensus 178 ~~~~~~~ 184 (223)
T PRK06696 178 AEKMYLA 184 (223)
T ss_pred HHHHHHH
Confidence 4444443
No 391
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.41 E-value=4.8e-14 Score=139.10 Aligned_cols=148 Identities=13% Similarity=0.115 Sum_probs=99.8
Q ss_pred eecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCe---------eEEEECCcc----cccccccccCCCCcccc
Q 038045 53 RACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSI---------AVISMDNYN----DSSRVVDGNFDDPRLTD 118 (621)
Q Consensus 53 k~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~s---------GvI~lDg~~----~~~R~Ig~vfQdp~l~d 118 (621)
+++++.+.+| +++|+||||||||||+++|.+++ +.. +.+.+++.. ...+.++++||++..+.
T Consensus 14 ~~~~l~~~~g----~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~ 89 (197)
T cd03278 14 DKTTIPFPPG----LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRY 89 (197)
T ss_pred CCeeeecCCC----cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCce
Confidence 5667777664 58999999999999999999987 331 234444442 12357899999998751
Q ss_pred cchHHHHHHHHhcCCCccCccccccccCccCCceeecCCccEEE----EecceeccccccCCCCeeEEecCCchHHHHHH
Q 038045 119 YDTLLENVRDLREGKPVQVPIYDFESSSRTGYRTVEVPSSRIVI----IEGIYALSEKLRPLLDLRVSVTGGVHFDLVKR 194 (621)
Q Consensus 119 ~~tV~enL~~L~~gk~V~~p~yd~~~~~rsggq~qrVa~ArVLI----vEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirR 194 (621)
...-.+.+..+... ....+.....+++|++++++.+++++ -++.++++|||+..+|+. ....+..
T Consensus 90 ~~~~~~~~~~~l~~----~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~-------~~~~l~~ 158 (197)
T cd03278 90 SIISQGDVSEIIEA----PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDA-------NVERFAR 158 (197)
T ss_pred eEEehhhHHHHHhC----CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHH-------HHHHHHH
Confidence 11012222222222 11234556788999999999999875 345899999999999973 2334444
Q ss_pred HHHHHHHcCCCceehHhHHHHH
Q 038045 195 VLRDIQRVGQEPEEIIQQISET 216 (621)
Q Consensus 195 I~Rdl~erG~Ti~~VtHd~eea 216 (621)
+.+.+.+ +.+++.++|+.+..
T Consensus 159 ~l~~~~~-~~tiIiitH~~~~~ 179 (197)
T cd03278 159 LLKEFSK-ETQFIVITHRKGTM 179 (197)
T ss_pred HHHHhcc-CCEEEEEECCHHHH
Confidence 4444433 68899999998754
No 392
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.39 E-value=4.8e-13 Score=130.29 Aligned_cols=178 Identities=13% Similarity=0.131 Sum_probs=124.2
Q ss_pred EeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCcccc-------cccccccCCCCccc-------
Q 038045 52 IRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNYNDS-------SRVVDGNFDDPRLT------- 117 (621)
Q Consensus 52 Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~~~~-------~R~Ig~vfQdp~l~------- 117 (621)
|-.+|..+..|+ ++-++||||||||||+..++|+.|.+|.|.++|.... .|.-+|.-|+....
T Consensus 15 L~plS~qv~aGe---~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~ 91 (248)
T COG4138 15 LGPLSGEVRAGE---ILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWH 91 (248)
T ss_pred ccccccccccce---EEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhh
Confidence 445667789999 9999999999999999999999999999999997321 23334433332211
Q ss_pred ------ccchHHHHHHHHhcCCCccCccccccccCccCCceeecCCccEEEE-------ecceeccccccCCCCeeEEec
Q 038045 118 ------DYDTLLENVRDLREGKPVQVPIYDFESSSRTGYRTVEVPSSRIVII-------EGIYALSEKLRPLLDLRVSVT 184 (621)
Q Consensus 118 ------d~~tV~enL~~L~~gk~V~~p~yd~~~~~rsggq~qrVa~ArVLIv-------EG~lLLlDEp~s~LDlkV~Vd 184 (621)
|..++...|..+...-.+. ....+..++++||+.|+|..+.+++- .+.+++.|||.+.||.
T Consensus 92 YL~L~qP~~~~a~~i~~i~~~L~l~-DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDv----- 165 (248)
T COG4138 92 YLTLHQPDKTRTELLNDVAGALALD-DKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDV----- 165 (248)
T ss_pred hhhhcCchHHHHHHHHHHHhhhccc-chhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhH-----
Confidence 2233333443332211111 12234567899999999988776552 4678889999999996
Q ss_pred CCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 185 GGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 185 ~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
.....+.|+...+...|.+++...||+.... .-+|..-.+..|.+..+++..++
T Consensus 166 --AQ~~aLdrll~~~c~~G~~vims~HDLNhTL----rhA~~~wLL~rG~l~~~G~~~eV 219 (248)
T COG4138 166 --AQQSALDRLLSALCQQGLAIVMSSHDLNHTL----RHAHRAWLLKRGKLLASGRREEV 219 (248)
T ss_pred --HHHHHHHHHHHHHHhCCcEEEEeccchhhHH----HHHHHHHHHhcCeEEeecchhhh
Confidence 2345667777777788999999999998886 44455556777877777777666
No 393
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.39 E-value=2.6e-13 Score=139.99 Aligned_cols=169 Identities=13% Similarity=0.049 Sum_probs=115.4
Q ss_pred CcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHH-----hhC------CC-----------eeEEEECCcccc-
Q 038045 47 GFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKIL-----NFM------PS-----------IAVISMDNYNDS- 103 (621)
Q Consensus 47 G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~La-----gLl------P~-----------sGvI~lDg~~~~- 103 (621)
.....|+++++.++.|. +++|+|+||||||||++.+. ..+ |. .-+|.+|.....
T Consensus 6 ~~~~nl~~v~~~ip~g~---~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~ 82 (261)
T cd03271 6 ARENNLKNIDVDIPLGV---LTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGR 82 (261)
T ss_pred cchhcCCCceeeccCCc---EEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCC
Confidence 34457999999999999 99999999999999999762 111 10 124566643110
Q ss_pred -cc-------------------------------cccccCCCCcccccchHHHHHHHHhcCC----------CccCc--c
Q 038045 104 -SR-------------------------------VVDGNFDDPRLTDYDTLLENVRDLREGK----------PVQVP--I 139 (621)
Q Consensus 104 -~R-------------------------------~Ig~vfQdp~l~d~~tV~enL~~L~~gk----------~V~~p--~ 139 (621)
.| .+.|..++...+..+++.+++.++..-. .+.+. .
T Consensus 83 ~~rs~~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~L~~vgL~~l~ 162 (261)
T cd03271 83 TPRSNPATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQTLCDVGLGYIK 162 (261)
T ss_pred CCCCcHHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHHHHHcCCchhh
Confidence 00 1122233333456788888887754321 12232 2
Q ss_pred ccccccCccCCceeecCCccEEEEe---cceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHH
Q 038045 140 YDFESSSRTGYRTVEVPSSRIVIIE---GIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISET 216 (621)
Q Consensus 140 yd~~~~~rsggq~qrVa~ArVLIvE---G~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea 216 (621)
.+.....+|+|++|++..+++++.+ |.++++|||+..||+. +.+.+.++.+.+.+.|.|++.++|+.+..
T Consensus 163 l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~-------~~~~l~~~L~~l~~~g~tvIiitH~~~~i 235 (261)
T cd03271 163 LGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFH-------DVKKLLEVLQRLVDKGNTVVVIEHNLDVI 235 (261)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHH-------HHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 3555678899999999999999986 6899999999999973 34455555566667799999999998765
Q ss_pred hccccccchhhhcC
Q 038045 217 SAKNLSVDQIKAVY 230 (621)
Q Consensus 217 ~~R~v~~~d~iavl 230 (621)
. .+|.+..+
T Consensus 236 ~-----~aD~ii~L 244 (261)
T cd03271 236 K-----CADWIIDL 244 (261)
T ss_pred H-----hCCEEEEe
Confidence 3 25555555
No 394
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.37 E-value=1.5e-13 Score=137.82 Aligned_cols=153 Identities=17% Similarity=0.109 Sum_probs=97.9
Q ss_pred eCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhh----------------C-CCee--------EEEECCc
Q 038045 46 KGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNF----------------M-PSIA--------VISMDNY 100 (621)
Q Consensus 46 ~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagL----------------l-P~sG--------vI~lDg~ 100 (621)
|+...++++++ ++ +++|+||||||||||+++|.++ + ++.| .|.+++.
T Consensus 12 y~~~~~~~~~~-----~~---~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~ 83 (243)
T cd03272 12 YKDQTVIEPFS-----PK---HNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNS 83 (243)
T ss_pred cccCcccccCC-----CC---cEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcC
Confidence 44556677765 67 8999999999999999999843 2 3333 4444542
Q ss_pred ----c------cccccccccCCCCccccc-chHHHHHHHHhcCC-Cc----------------cC-ccccccccCccCCc
Q 038045 101 ----N------DSSRVVDGNFDDPRLTDY-DTLLENVRDLREGK-PV----------------QV-PIYDFESSSRTGYR 151 (621)
Q Consensus 101 ----~------~~~R~Ig~vfQdp~l~d~-~tV~enL~~L~~gk-~V----------------~~-p~yd~~~~~rsggq 151 (621)
. ...+.++++++++.+++. .+..+....+..-. .. .. +..+......|+|+
T Consensus 84 ~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~~lS~G~ 163 (243)
T cd03272 84 DNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQQLSGGQ 163 (243)
T ss_pred CCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccccccccccccCHHH
Confidence 1 113457888888777763 45555444433210 00 00 11234557789999
Q ss_pred eeecCCccEEEE----ecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHH
Q 038045 152 TVEVPSSRIVII----EGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQIS 214 (621)
Q Consensus 152 ~qrVa~ArVLIv----EG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~e 214 (621)
+++++.+++++. ++.++++|||+..+|+. ..+.+....+.+.+ +.+++.++|+.+
T Consensus 164 ~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~-------~~~~~~~~l~~~~~-~~~ii~~~h~~~ 222 (243)
T cd03272 164 KSLVALALIFAIQKCDPAPFYLFDEIDAALDAQ-------YRTAVANMIKELSD-GAQFITTTFRPE 222 (243)
T ss_pred HHHHHHHHHHHHhccCCCCEEEEECCccCCCHH-------HHHHHHHHHHHHhC-CCEEEEEecCHH
Confidence 999999999963 47899999999999973 22333334444433 677777777743
No 395
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.37 E-value=1.4e-13 Score=136.62 Aligned_cols=165 Identities=16% Similarity=0.085 Sum_probs=105.5
Q ss_pred eecceEEe-CCCcceEEEEECCCCCcHHHHHHHHHhhC--CCeeEEEECC----c--ccccccccccCCCCcc------c
Q 038045 53 RACQLLAQ-KNDGIILIGLAGPSGAGKTIFTEKILNFM--PSIAVISMDN----Y--NDSSRVVDGNFDDPRL------T 117 (621)
Q Consensus 53 k~IsL~I~-~Ge~~iIVGI~GpSGSGKSTLlr~LagLl--P~sGvI~lDg----~--~~~~R~Ig~vfQdp~l------~ 117 (621)
..|+|... +|+ +++|+||||||||||+++|++.+ +..+....+. . ......++++||++.. +
T Consensus 18 ~~i~~~~~~~~~---~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~r~ 94 (213)
T cd03279 18 QVIDFTGLDNNG---LFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKYRVERS 94 (213)
T ss_pred eEEeCCCCCccC---EEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECCeEEEEEEe
Confidence 44555433 477 99999999999999999999644 3333333221 1 1223457788887653 1
Q ss_pred ccchHHHHHHHH--hcCCCccCccccccccCccCCceeecCCccEEEE----------ecceeccccccCCCCeeEEecC
Q 038045 118 DYDTLLENVRDL--REGKPVQVPIYDFESSSRTGYRTVEVPSSRIVII----------EGIYALSEKLRPLLDLRVSVTG 185 (621)
Q Consensus 118 d~~tV~enL~~L--~~gk~V~~p~yd~~~~~rsggq~qrVa~ArVLIv----------EG~lLLlDEp~s~LDlkV~Vd~ 185 (621)
......+..... ..+. .....+......++|++++++.+++++. +|.++++|||+..+|+.
T Consensus 95 ~gl~~~~~~~~~~l~~g~--l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~----- 167 (213)
T cd03279 95 RGLDYDQFTRIVLLPQGE--FDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPE----- 167 (213)
T ss_pred cCCCHHHHHHhhhhhhcc--hHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHH-----
Confidence 222233222211 1111 0122244557789999999999999975 56789999999999973
Q ss_pred CchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCC
Q 038045 186 GVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEG 233 (621)
Q Consensus 186 ~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg 233 (621)
..+.+.++.+.+.+.|.|++.++|+++... .+++++.++.++
T Consensus 168 --~~~~~~~~l~~~~~~~~tii~itH~~~~~~----~~~~~i~~~~~~ 209 (213)
T cd03279 168 --ALEAVATALELIRTENRMVGVISHVEELKE----RIPQRLEVIKTP 209 (213)
T ss_pred --HHHHHHHHHHHHHhCCCEEEEEECchHHHH----hhCcEEEEEecC
Confidence 234455555556666899999999998775 555665555544
No 396
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.31 E-value=3.7e-12 Score=127.13 Aligned_cols=197 Identities=13% Similarity=0.152 Sum_probs=142.0
Q ss_pred eeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCcc----------cc-c-----cccc
Q 038045 45 EKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNYN----------DS-S-----RVVD 108 (621)
Q Consensus 45 ~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~~----------~~-~-----R~Ig 108 (621)
+.|...+++.+|+++.+|| +-|++|.||||||-+++.|.|...+.=.|.-|-++ +. + +.+.
T Consensus 16 sqG~vK~VD~v~ltlnEGE---i~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~is 92 (330)
T COG4170 16 SQGWVKAVDRVSMTLNEGE---IRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVS 92 (330)
T ss_pred CCCceEeeeeeeeeeccce---eeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchh
Confidence 4688889999999999999 99999999999999999999988433345444331 11 1 3478
Q ss_pred ccCCCCcc--cccchHHHHHHH-Hh----cC-----------CC------ccC----ccccccccCccCCceeecCCccE
Q 038045 109 GNFDDPRL--TDYDTLLENVRD-LR----EG-----------KP------VQV----PIYDFESSSRTGYRTVEVPSSRI 160 (621)
Q Consensus 109 ~vfQdp~l--~d~~tV~enL~~-L~----~g-----------k~------V~~----p~yd~~~~~rsggq~qrVa~ArV 160 (621)
|+||+|.. -+..++...+-. +- ++ +. +.+ ....-.+.++..|+.|.|-+|-+
T Consensus 93 MIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A 172 (330)
T COG4170 93 MIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIA 172 (330)
T ss_pred hhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehh
Confidence 99999963 344444333321 10 11 00 000 01111145667788899999999
Q ss_pred EEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccC
Q 038045 161 VIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQ 240 (621)
Q Consensus 161 LIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~ 240 (621)
+...|.+++.|||++.+|+.. ..+.++.+.|..+..|.|+..+.||+.... .|+|++.|+|.|.......
T Consensus 173 ~AnqPrLLIADEPTN~~e~~T------q~QifRLLs~mNQn~~TtILL~s~Dl~~is----~W~d~i~VlYCGQ~~ESa~ 242 (330)
T COG4170 173 LANQPRLLIADEPTNSMEPTT------QAQIFRLLSRLNQNSNTTILLISHDLQMIS----QWADKINVLYCGQTVESAP 242 (330)
T ss_pred hccCCceEeccCCCcccCccH------HHHHHHHHHHhhccCCceEEEEcccHHHHH----HHhhheEEEEecccccccc
Confidence 999999999999999999742 235566666666777999999999999888 8999999999998777777
Q ss_pred ceeEEecCCCCCcc
Q 038045 241 TYDIYLLPPGEDPE 254 (621)
Q Consensus 241 ~aDIYi~P~~~~~e 254 (621)
.++++-.|...+..
T Consensus 243 ~e~l~~~PhHPYTq 256 (330)
T COG4170 243 SEELVTMPHHPYTQ 256 (330)
T ss_pred hhHHhcCCCCchHH
Confidence 77776666665543
No 397
>PRK07667 uridine kinase; Provisional
Probab=99.29 E-value=6.1e-12 Score=123.48 Aligned_cols=148 Identities=17% Similarity=0.318 Sum_probs=101.5
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhhC----CCeeEEEECCccccccc-ccccCCC-----CcccccchHHHHH-HHHhcC
Q 038045 64 GIILIGLAGPSGAGKTIFTEKILNFM----PSIAVISMDNYNDSSRV-VDGNFDD-----PRLTDYDTLLENV-RDLREG 132 (621)
Q Consensus 64 ~~iIVGI~GpSGSGKSTLlr~LagLl----P~sGvI~lDg~~~~~R~-Ig~vfQd-----p~l~d~~tV~enL-~~L~~g 132 (621)
.+++|||.|++||||||+++.|+..+ .....+++|+|+..... ....+.+ ...++...+.+.+ ..++.+
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~v~~~L~~~ 95 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRYHTGFEEWYEYYYLQWDIEWLRQKFFRKLQNE 95 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhhHHhcCCCchhhhhhhhhhHHHHHHHHHHhhcCC
Confidence 34799999999999999999999876 24568999998543211 0001111 1124444555554 556677
Q ss_pred CCccCccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhH
Q 038045 133 KPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQ 212 (621)
Q Consensus 133 k~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd 212 (621)
+.+..|.|++..+.... ....++...++|+||.+++..+..+.+|..|+|+++.+.++.|.+.| .|.+.....+.
T Consensus 96 ~~i~~P~~d~~~~~~~~-~~~~~~~~~vvIvEG~~l~~~~~~~~~d~~v~V~~~~~~~~~R~~~r----~~~~~~~~~~r 170 (193)
T PRK07667 96 TKLTLPFYHDETDTCEM-KKVQIPIVGVIVIEGVFLQRKEWRDFFHYMVYLDCPRETRFLRESEE----TQKNLSKFKNR 170 (193)
T ss_pred CeEEEeeeccccccccc-cceecCCCCEEEEEehhhhhhhHHhhceEEEEEECCHHHHHHHHhcc----cHhHHHHHHHH
Confidence 78999999998765543 33345667999999999888888899999999999988766655443 24455445555
Q ss_pred HHHH
Q 038045 213 ISET 216 (621)
Q Consensus 213 ~eea 216 (621)
|..+
T Consensus 171 ~~~a 174 (193)
T PRK07667 171 YWKA 174 (193)
T ss_pred hHHH
Confidence 4433
No 398
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.29 E-value=5.1e-12 Score=139.94 Aligned_cols=173 Identities=17% Similarity=0.187 Sum_probs=141.8
Q ss_pred EEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc--------cccccccCCCC---cccc
Q 038045 51 VIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS--------SRVVDGNFDDP---RLTD 118 (621)
Q Consensus 51 ~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~--------~R~Ig~vfQdp---~l~d 118 (621)
.++++||++.+|| |+||.|--|||+|-|+++|.|.. +..|.|.+||.... +..++|++.|- .++.
T Consensus 274 ~~~dvSf~vr~GE---IlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l 350 (500)
T COG1129 274 KVRDVSFTVRAGE---ILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVL 350 (500)
T ss_pred ceeCceeEEeCCc---EEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcC
Confidence 5899999999999 99999999999999999999977 68999999998322 23578888764 4788
Q ss_pred cchHHHHHHHH--hc---C------------------CCccCccccccccCccCCceeecCCccEEEEecceeccccccC
Q 038045 119 YDTLLENVRDL--RE---G------------------KPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRP 175 (621)
Q Consensus 119 ~~tV~enL~~L--~~---g------------------k~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s 175 (621)
.+++.+|+... .. . -.+..|..+.....+|||.+|+|..+|.+..+|.++++|||+.
T Consensus 351 ~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTR 430 (500)
T COG1129 351 DMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTR 430 (500)
T ss_pred CCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCc
Confidence 88888887643 11 0 0123344445567889999999999999999999999999999
Q ss_pred CCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceee
Q 038045 176 LLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTET 237 (621)
Q Consensus 176 ~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~ 237 (621)
..|.- . ..-+.++.+.+.+.|.+++.++.++.|.. ..||++.+|.+|.+..
T Consensus 431 GIDVG------A-K~eIy~li~~lA~~G~ail~iSSElpEll----~~~DRIlVm~~Gri~~ 481 (500)
T COG1129 431 GIDVG------A-KAEIYRLIRELAAEGKAILMISSELPELL----GLSDRILVMREGRIVG 481 (500)
T ss_pred Ccccc------h-HHHHHHHHHHHHHCCCEEEEEeCChHHHH----hhCCEEEEEECCEEEE
Confidence 99973 2 34566777888889999999999999998 8999999999997755
No 399
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=1.5e-12 Score=142.68 Aligned_cols=163 Identities=16% Similarity=0.095 Sum_probs=108.0
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhh----CCCeeEEEECCcc-c------ccc
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNF----MPSIAVISMDNYN-D------SSR 105 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagL----lP~sGvI~lDg~~-~------~~R 105 (621)
..-++++..+|.+.+|.+-++++..|. -+|++|+||+|||||+|+|+.- +|..-.+.-|+.. . ...
T Consensus 81 i~~~~fdLa~G~k~LL~~a~L~L~~Gr---RYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~~D~~ 157 (582)
T KOG0062|consen 81 IHIDNFDLAYGGKILLNKANLTLSRGR---RYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLESDTE 157 (582)
T ss_pred eeeeeeeeeecchhhhcCCceeeeccc---ccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhhccHH
Confidence 345568888999999999999999999 6999999999999999999982 1322222222110 0 001
Q ss_pred cccccCCCCcccccchHHHHHHHHhcCCCccCccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecC
Q 038045 106 VVDGNFDDPRLTDYDTLLENVRDLREGKPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTG 185 (621)
Q Consensus 106 ~Ig~vfQdp~l~d~~tV~enL~~L~~gk~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~ 185 (621)
...++.+++.+....+..+.....+.+-.....-....+...|||.+.+++.||++..+|.+||+|||+++||..
T Consensus 158 ~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~----- 232 (582)
T KOG0062|consen 158 RLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVV----- 232 (582)
T ss_pred HHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhH-----
Confidence 223444444333222333333312222222111122335778999999999999999999999999999999972
Q ss_pred CchHHHHHHHHHHHHHcCCCceehHhH
Q 038045 186 GVHFDLVKRVLRDIQRVGQEPEEIIQQ 212 (621)
Q Consensus 186 ~~d~~LirRI~Rdl~erG~Ti~~VtHd 212 (621)
.+.-+...+...+.|.+.|.||
T Consensus 233 -----av~WLe~yL~t~~~T~liVSHD 254 (582)
T KOG0062|consen 233 -----AVAWLENYLQTWKITSLIVSHD 254 (582)
T ss_pred -----HHHHHHHHHhhCCceEEEEecc
Confidence 2333444456667899999998
No 400
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.28 E-value=6.7e-13 Score=131.56 Aligned_cols=141 Identities=16% Similarity=0.091 Sum_probs=97.6
Q ss_pred EEEEECCCCCcHHHHHHHHH----hhC-CCeeEEEECCc----ccccccccccCCCC-----cccccchHHHHHHHHhcC
Q 038045 67 LIGLAGPSGAGKTIFTEKIL----NFM-PSIAVISMDNY----NDSSRVVDGNFDDP-----RLTDYDTLLENVRDLREG 132 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~La----gLl-P~sGvI~lDg~----~~~~R~Ig~vfQdp-----~l~d~~tV~enL~~L~~g 132 (621)
+++|+||||||||||+++|. |.. |+.+.+..+.. ......++++||++ ......++.+++.+...+
T Consensus 24 ~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~~~~~~~~~~ 103 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILENVIFCHQG 103 (204)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHhhceeeechH
Confidence 79999999999999999995 655 55554432211 12234678888887 234445788887653222
Q ss_pred CCccCccccccccCccCCceee------cCCccEEEEecceeccccccCCCCeeEEecCCchHH-HHHHHHHHHHHc-CC
Q 038045 133 KPVQVPIYDFESSSRTGYRTVE------VPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFD-LVKRVLRDIQRV-GQ 204 (621)
Q Consensus 133 k~V~~p~yd~~~~~rsggq~qr------Va~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~-LirRI~Rdl~er-G~ 204 (621)
+ + ...++.....+++|++++ ++.+++++.+|.+++.|||+..||+. ..+ .+.++.+.+.+. |.
T Consensus 104 ~-~-~~~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~-------~~~~~l~~~l~~~~~~~~~ 174 (204)
T cd03240 104 E-S-NWPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEE-------NIEESLAEIIEERKSQKNF 174 (204)
T ss_pred H-H-HHHHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHH-------HHHHHHHHHHHHHHhccCC
Confidence 1 1 112255567889999885 67889999999999999999999973 233 444444554444 88
Q ss_pred CceehHhHHHHH
Q 038045 205 EPEEIIQQISET 216 (621)
Q Consensus 205 Ti~~VtHd~eea 216 (621)
+++.++|+.+..
T Consensus 175 ~iiiitH~~~~~ 186 (204)
T cd03240 175 QLIVITHDEELV 186 (204)
T ss_pred EEEEEEecHHHH
Confidence 999999997654
No 401
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.27 E-value=2.9e-12 Score=144.37 Aligned_cols=160 Identities=16% Similarity=0.147 Sum_probs=112.9
Q ss_pred eeecceeeee-CcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhCC-CeeEEEECCcccccccccccCCCC
Q 038045 37 PIQDPLSFEK-GFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFMP-SIAVISMDNYNDSSRVVDGNFDDP 114 (621)
Q Consensus 37 ~v~~~lsf~~-G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP-~sGvI~lDg~~~~~R~Ig~vfQdp 114 (621)
...++++... .....++++++.+++|+ -+-|.|+||||||||+|+|+|+-| +.|.|.+- ....+-|++|.|
T Consensus 393 i~~~nl~l~~p~~~~ll~~l~~~v~~G~---~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P----~~~~~lflpQ~P 465 (604)
T COG4178 393 ITLENLSLRTPDGQTLLSELNFEVRPGE---RLLITGESGAGKTSLLRALAGLWPWGSGRISMP----ADSALLFLPQRP 465 (604)
T ss_pred eEEeeeeEECCCCCeeeccceeeeCCCC---EEEEECCCCCCHHHHHHHHhccCccCCCceecC----CCCceEEecCCC
Confidence 3455555543 34589999999999999 799999999999999999999987 67777664 222345666666
Q ss_pred cccccchHHHHHHHHhcCC------------CccCccc----c---ccccCccCCceeecCCccEEEEecceeccccccC
Q 038045 115 RLTDYDTLLENVRDLREGK------------PVQVPIY----D---FESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRP 175 (621)
Q Consensus 115 ~l~d~~tV~enL~~L~~gk------------~V~~p~y----d---~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s 175 (621)
.+.. -++++.|.++.... .+.++.+ + .=...+++|++|+++.||+++..|.++++||.++
T Consensus 466 Y~p~-GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATs 544 (604)
T COG4178 466 YLPQ-GTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATS 544 (604)
T ss_pred CCCC-ccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchh
Confidence 4322 25555555433221 0111110 1 0124578999999999999999999999999999
Q ss_pred CCCeeEEecCCchHHHHHHHHHHHHH--cCCCceehHhHHH
Q 038045 176 LLDLRVSVTGGVHFDLVKRVLRDIQR--VGQEPEEIIQQIS 214 (621)
Q Consensus 176 ~LDlkV~Vd~~~d~~LirRI~Rdl~e--rG~Ti~~VtHd~e 214 (621)
.||+ ....++.+.+++ -+.|++.|.|+-.
T Consensus 545 ALDe----------~~e~~l~q~l~~~lp~~tvISV~Hr~t 575 (604)
T COG4178 545 ALDE----------ETEDRLYQLLKEELPDATVISVGHRPT 575 (604)
T ss_pred ccCh----------HHHHHHHHHHHhhCCCCEEEEeccchh
Confidence 9997 344455555555 5899999999843
No 402
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=99.24 E-value=3.3e-11 Score=131.10 Aligned_cols=108 Identities=22% Similarity=0.312 Sum_probs=79.0
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhhC-CC---eeEEEECCcccccc---ccc-ccC--------CCCcccccchHHHHH
Q 038045 63 DGIILIGLAGPSGAGKTIFTEKILNFM-PS---IAVISMDNYNDSSR---VVD-GNF--------DDPRLTDYDTLLENV 126 (621)
Q Consensus 63 e~~iIVGI~GpSGSGKSTLlr~LagLl-P~---sGvI~lDg~~~~~R---~Ig-~vf--------Qdp~l~d~~tV~enL 126 (621)
.+|++|||.|++|||||||++.|.+++ +. .+.|++|||+.... ... .++ ..|..+|.....+++
T Consensus 210 ~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfYLt~eer~kL~~~nP~n~LL~~RG~PGTHDv~Lg~e~L 289 (460)
T PLN03046 210 IPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYLTAEGQAELRERNPGNALLELRGNAGSHDLQFSVETL 289 (460)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCccCChHHHHHHHhhCccchhhcccCCCccccHhhHHHHH
Confidence 368999999999999999999999988 43 89999999974221 111 111 124567776677777
Q ss_pred HHH----hcCCCccCccccccccC----ccCCc--eeecCCccEEEEecceecc
Q 038045 127 RDL----REGKPVQVPIYDFESSS----RTGYR--TVEVPSSRIVIIEGIYALS 170 (621)
Q Consensus 127 ~~L----~~gk~V~~p~yd~~~~~----rsggq--~qrVa~ArVLIvEG~lLLl 170 (621)
..+ +.++.+.+|.||+..+. +...+ .....+.+|||+||+++..
T Consensus 290 ~~L~~~lk~G~~V~iP~YDKs~h~GrgDR~~~~~W~~v~~P~DVIIfEGW~vG~ 343 (460)
T PLN03046 290 EALSKLTKEGIKMKVPRYDKSAYSGRGDRADPSTWPEVEGPLEVILFEGWMLGF 343 (460)
T ss_pred HHHHHHhhCCCeeecCCCCccccCCCCCCcCcccceeecCCCCEEEEcCHHhCC
Confidence 766 46789999999998744 43321 2345778999999988775
No 403
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.23 E-value=1.5e-11 Score=146.58 Aligned_cols=158 Identities=20% Similarity=0.140 Sum_probs=124.2
Q ss_pred CcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-C--CeeEEEECCcccc----cccccccCCCCccccc
Q 038045 47 GFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-P--SIAVISMDNYNDS----SRVVDGNFDDPRLTDY 119 (621)
Q Consensus 47 G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P--~sGvI~lDg~~~~----~R~Ig~vfQdp~l~d~ 119 (621)
+.+.+|++|+=-++||- +.+|.|.||||||||++.|+|.. . -.|.|.++|+... +|..||+-|+....+.
T Consensus 802 ~~~qLL~~V~G~~kPG~---LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~ 878 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGV---LTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPE 878 (1391)
T ss_pred cceEhhhcCceEecCCc---eeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcc
Confidence 67889999999999999 99999999999999999999986 2 3688999998654 4789999999888899
Q ss_pred chHHHHHHH---HhcCCCc----------------cCcccccc-cc----CccCCceeecCCccEEEEec-ceecccccc
Q 038045 120 DTLLENVRD---LREGKPV----------------QVPIYDFE-SS----SRTGYRTVEVPSSRIVIIEG-IYALSEKLR 174 (621)
Q Consensus 120 ~tV~enL~~---L~~gk~V----------------~~p~yd~~-~~----~rsggq~qrVa~ArVLIvEG-~lLLlDEp~ 174 (621)
.||+|-|.+ |+..+.+ +++.|... .+ .++.+|+.++.++-=|+..| .++++|||+
T Consensus 879 ~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPT 958 (1391)
T KOG0065|consen 879 LTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPT 958 (1391)
T ss_pred cchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCC
Confidence 999999976 4433222 22222211 12 25566788888888899999 778899999
Q ss_pred CCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHH
Q 038045 175 PLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQIS 214 (621)
Q Consensus 175 s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~e 214 (621)
++||-. ..-.+-++.|.+.+.|+|++..+||-.
T Consensus 959 SGLDsq-------aA~~i~~~lrkla~tGqtIlCTIHQPS 991 (1391)
T KOG0065|consen 959 SGLDSQ-------AAAIVMRFLRKLADTGQTILCTIHQPS 991 (1391)
T ss_pred CCccHH-------HHHHHHHHHHHHHhcCCeEEEEecCCc
Confidence 999963 223555677777889999999999943
No 404
>PRK06547 hypothetical protein; Provisional
Probab=99.22 E-value=3.1e-11 Score=117.24 Aligned_cols=123 Identities=24% Similarity=0.367 Sum_probs=89.9
Q ss_pred CCcceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCcccccccccccCCCCcccccchHHHHHHHHhcCCCccCcccc
Q 038045 62 NDGIILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNYNDSSRVVDGNFDDPRLTDYDTLLENVRDLREGKPVQVPIYD 141 (621)
Q Consensus 62 Ge~~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~~~~~R~Ig~vfQdp~l~d~~tV~enL~~L~~gk~V~~p~yd 141 (621)
+.++.+|+|.|++|||||||++.|+..+ +...+++|+++....... .....+.+.+.. .++....+ ||
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~-~~~~~~~d~~~~~~~~~~--------~~~~~l~~~~l~--~g~~~~~~-yd 79 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAART-GFQLVHLDDLYPGWHGLA--------AASEHVAEAVLD--EGRPGRWR-WD 79 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHh-CCCeecccceecccccCC--------hHHHHHHHHHHh--CCCCceec-CC
Confidence 4567899999999999999999999986 567889998764321110 111223333332 45555556 88
Q ss_pred ccccCccCCceeecCCccEEEEecceeccccccCCCC-----eeEEecCCchHHHHHHHHHH
Q 038045 142 FESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLD-----LRVSVTGGVHFDLVKRVLRD 198 (621)
Q Consensus 142 ~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LD-----lkV~Vd~~~d~~LirRI~Rd 198 (621)
+..+.... ...+....++|+||.+++.++.+..+| ++||++++.+.++.|++.|+
T Consensus 80 ~~~~~~~~--~~~l~~~~vVIvEG~~al~~~~r~~~d~~g~v~~I~ld~~~~vr~~R~~~Rd 139 (172)
T PRK06547 80 WANNRPGD--WVSVEPGRRLIIEGVGSLTAANVALASLLGEVLTVWLDGPEALRKERALARD 139 (172)
T ss_pred CCCCCCCC--cEEeCCCCeEEEEehhhccHHHHHHhccCCCEEEEEEECCHHHHHHHHHhcC
Confidence 77554332 335556789999999999999989999 99999999999988888876
No 405
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.16 E-value=3.7e-12 Score=127.20 Aligned_cols=158 Identities=12% Similarity=0.084 Sum_probs=95.0
Q ss_pred eeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccccccccccCCCCcccccchHH
Q 038045 45 EKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDSSRVVDGNFDDPRLTDYDTLL 123 (621)
Q Consensus 45 ~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~~R~Ig~vfQdp~l~d~~tV~ 123 (621)
.|+...+++++++ + ++||+|||||||||++++|...+ ... . ....+.+++++++...++.+++.
T Consensus 13 ~~~~~~~l~~~~~-----~---i~~ivGpNGaGKSTll~~i~~~~G~~~-----~--~~~~~~i~~~~~~~~~~~~~~~~ 77 (212)
T cd03274 13 SYAGEQVIGPFHK-----S---FSAIVGPNGSGKSNVIDSMLFVFGFRA-----S--KMRQKKLSDLIHNSAGHPNLDSC 77 (212)
T ss_pred cCCCCeeeccCCC-----C---eEEEECCCCCCHHHHHHHHHHHhccCH-----H--HhhhhhHHHHhcCCCCCCCCceE
Confidence 4567778888877 6 89999999999999999998543 110 0 01112344444444333333222
Q ss_pred HHHHHHhc-----------------------C---CCccCc-cccccccCccCCceeecCCccEEEE----ecceecccc
Q 038045 124 ENVRDLRE-----------------------G---KPVQVP-IYDFESSSRTGYRTVEVPSSRIVII----EGIYALSEK 172 (621)
Q Consensus 124 enL~~L~~-----------------------g---k~V~~p-~yd~~~~~rsggq~qrVa~ArVLIv----EG~lLLlDE 172 (621)
+.+..+.. + +...++ ..+......++|+++++..+++++. .|.++++||
T Consensus 78 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDE 157 (212)
T cd03274 78 SVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDE 157 (212)
T ss_pred EEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcC
Confidence 22211110 0 011112 1233346678899999999998864 368999999
Q ss_pred ccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcC
Q 038045 173 LRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVY 230 (621)
Q Consensus 173 p~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl 230 (621)
|+..+|+. ..+.++++.+.+. .+.+++.++|+. +.. ..+|++.++
T Consensus 158 Pt~gLD~~-------~~~~l~~~l~~~~-~~~~~iivs~~~-~~~----~~~d~v~~~ 202 (212)
T cd03274 158 IDAALDFR-------NVSIVANYIKERT-KNAQFIVISLRN-NMF----ELADRLVGI 202 (212)
T ss_pred CCcCCCHH-------HHHHHHHHHHHHc-CCCEEEEEECcH-HHH----HhCCEEEEE
Confidence 99999973 2345555555553 356778888884 333 445544444
No 406
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.14 E-value=3.6e-11 Score=130.66 Aligned_cols=143 Identities=17% Similarity=0.175 Sum_probs=102.6
Q ss_pred EEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccccccccccCCCCcccccchHHHHHHHHhcC----
Q 038045 58 LAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDSSRVVDGNFDDPRLTDYDTLLENVRDLREG---- 132 (621)
Q Consensus 58 ~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~~R~Ig~vfQdp~l~d~~tV~enL~~L~~g---- 132 (621)
.+..|| ++|++||||-|||||+++|+|.+ |+.|. .. .-.+.|-+|--..-...||.+.+......
T Consensus 363 ~i~~gE---vigilGpNgiGKTTFvk~LAG~ikPdeg~-~~------~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~ 432 (591)
T COG1245 363 EIYDGE---VIGILGPNGIGKTTFVKLLAGVIKPDEGS-EE------DLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGS 432 (591)
T ss_pred eeecce---EEEEECCCCcchHHHHHHHhccccCCCCC-Cc------cceEeecceeecCCCCCcHHHHHHHhhhhhccc
Confidence 455567 99999999999999999999999 98876 11 12344555543333345666665542221
Q ss_pred --------CCccC-ccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcC
Q 038045 133 --------KPVQV-PIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVG 203 (621)
Q Consensus 133 --------k~V~~-p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG 203 (621)
++..+ +.++.....+|||+.|+++++-+|.-|+.+-|+|||...||.- ......+-|+|.+...+
T Consensus 433 s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvE------qR~~vakvIRR~~e~~~ 506 (591)
T COG1245 433 SYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVE------QRIIVAKVIRRFIENNE 506 (591)
T ss_pred chhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHH------HHHHHHHHHHHHHhhcC
Confidence 12222 3467778899999999999999999999999999999999952 22334444556667778
Q ss_pred CCceehHhHHHHH
Q 038045 204 QEPEEIIQQISET 216 (621)
Q Consensus 204 ~Ti~~VtHd~eea 216 (621)
.|...|-||+.-.
T Consensus 507 kta~vVdHDi~~~ 519 (591)
T COG1245 507 KTALVVDHDIYMI 519 (591)
T ss_pred ceEEEEecceehh
Confidence 9999999996544
No 407
>PLN02796 D-glycerate 3-kinase
Probab=99.12 E-value=1.2e-10 Score=124.33 Aligned_cols=121 Identities=21% Similarity=0.274 Sum_probs=87.0
Q ss_pred EEEeecceEE---eCCC--cceEEEEECCCCCcHHHHHHHHHhhC-C---CeeEEEECCcccccc-cccccCCC------
Q 038045 50 VVIRACQLLA---QKND--GIILIGLAGPSGAGKTIFTEKILNFM-P---SIAVISMDNYNDSSR-VVDGNFDD------ 113 (621)
Q Consensus 50 ~~Lk~IsL~I---~~Ge--~~iIVGI~GpSGSGKSTLlr~LagLl-P---~sGvI~lDg~~~~~R-~Ig~vfQd------ 113 (621)
.+++.+++.+ ++|+ +|++|||+|++|||||||++.|.+++ + ..|.|++||++.... ......|+
T Consensus 80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~q~P~n~Ll 159 (347)
T PLN02796 80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAEANPGNALL 159 (347)
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHhhCcchhhh
Confidence 3566777766 4443 58899999999999999999999998 4 378999999964321 11122233
Q ss_pred -----CcccccchHHHHHHHHh----cCCCccCccccccccC----ccCC-c-eeecCCccEEEEecceecc
Q 038045 114 -----PRLTDYDTLLENVRDLR----EGKPVQVPIYDFESSS----RTGY-R-TVEVPSSRIVIIEGIYALS 170 (621)
Q Consensus 114 -----p~l~d~~tV~enL~~L~----~gk~V~~p~yd~~~~~----rsgg-q-~qrVa~ArVLIvEG~lLLl 170 (621)
|..+|...+.+++..++ .++.+.+|.||+..+. +... . .....+.+|+|+||+++-.
T Consensus 160 ~~RG~PgThDl~Ll~e~L~~L~~~~~~g~~v~iP~yDks~~~g~gDR~~~~~w~~v~~p~dVII~EGw~vG~ 231 (347)
T PLN02796 160 ELRGNAGSHDLALGVETLEALRKLNKEGSKMKVPRYDKSAYGGRGDRADPSTWPEVEGPLDVVLFEGWMLGF 231 (347)
T ss_pred hcCCCCchhHHHHHHHHHHHHHhhhcCCCceecCCCCccccCCCCCCcCcccceEecCCCCEEEEcCcccCC
Confidence 34567777888888877 5678999999999754 3321 1 2334678999999987754
No 408
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.11 E-value=5.5e-11 Score=132.10 Aligned_cols=163 Identities=15% Similarity=0.104 Sum_probs=113.6
Q ss_pred eecceeeee--CcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhCC-CeeEEEECCcccccccccccCCCC
Q 038045 38 IQDPLSFEK--GFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFMP-SIAVISMDNYNDSSRVVDGNFDDP 114 (621)
Q Consensus 38 v~~~lsf~~--G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP-~sGvI~lDg~~~~~R~Ig~vfQdp 114 (621)
..+++++.- ...++++++||.|+.|. -+.|+||||||||+|+|.|+|+-| ..|.+..-... ....+-|++|-|
T Consensus 435 ~~e~v~l~tPt~g~~lie~Ls~~V~~g~---~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~-~~~~lfflPQrP 510 (659)
T KOG0060|consen 435 EFEEVSLSTPTNGDLLIENLSLEVPSGQ---NLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDG-GPKDLFFLPQRP 510 (659)
T ss_pred EeeeeeecCCCCCceeeeeeeeEecCCC---eEEEECCCCCchhHHHHHHhcccccCCCeEEecccC-CCCceEEecCCC
Confidence 455565542 25678999999999999 899999999999999999999986 67877653211 112355566655
Q ss_pred cccccchHHHHHHHH-----------------------hcC------CCccC-ccccccccCccCCceeecCCccEEEEe
Q 038045 115 RLTDYDTLLENVRDL-----------------------REG------KPVQV-PIYDFESSSRTGYRTVEVPSSRIVIIE 164 (621)
Q Consensus 115 ~l~d~~tV~enL~~L-----------------------~~g------k~V~~-p~yd~~~~~rsggq~qrVa~ArVLIvE 164 (621)
..... |+++.|-++ +-+ ....- ..++|. +.+|+|++||++.||.+..+
T Consensus 511 Ymt~G-TLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~-dvLS~GEqQRLa~ARLfy~k 588 (659)
T KOG0060|consen 511 YMTLG-TLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWM-DVLSPGEQQRLAFARLFYHK 588 (659)
T ss_pred Ccccc-chhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHH-hhcCHHHHHHHHHHHHHhcC
Confidence 32111 333332221 111 00110 123333 56899999999999999999
Q ss_pred cceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHH
Q 038045 165 GIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISET 216 (621)
Q Consensus 165 G~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea 216 (621)
|.++++||-++++|. +....+-|..++.|+|.+.|-|+..-.
T Consensus 589 Pk~AiLDE~TSAv~~----------dvE~~~Yr~~r~~giT~iSVgHRkSL~ 630 (659)
T KOG0060|consen 589 PKFAILDECTSAVTE----------DVEGALYRKCREMGITFISVGHRKSLW 630 (659)
T ss_pred CceEEeechhhhccH----------HHHHHHHHHHHHcCCeEEEeccHHHHH
Confidence 999999999999995 445566667788899999999997544
No 409
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.10 E-value=5.9e-11 Score=131.10 Aligned_cols=164 Identities=18% Similarity=0.189 Sum_probs=102.3
Q ss_pred eecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcc------ccc-ccccc
Q 038045 38 IQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYN------DSS-RVVDG 109 (621)
Q Consensus 38 v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~------~~~-R~Ig~ 109 (621)
-.+++++.+-.+.++++..|++.+|+ -+||+|+|||||||++++|++-+ |..-. +|-|. +.. ..+..
T Consensus 77 k~~sls~s~~g~~l~kd~~~El~~g~---rygLiG~nG~Gkst~L~~i~~~e~P~p~~--~d~y~ls~e~~ps~~~av~~ 151 (614)
T KOG0927|consen 77 KIESLSLSFHGVELIKDVTLELNRGR---RYGLIGPNGSGKSTFLRAIAGREVPIPEH--IDFYLLSREIEPSEKQAVQA 151 (614)
T ss_pred eeeeeeeccCCceeeeeeeEEecCCc---eEEEEcCCCCcHhHHHHHHhcCCCCCCcc--cchhhhcccCCCchHHHHHH
Confidence 35567777778899999999999999 79999999999999999999988 53222 22221 100 01111
Q ss_pred cCC---------------------CCcccccchHHHHHH------------HHhcCCCccCccccccccCccCCceeecC
Q 038045 110 NFD---------------------DPRLTDYDTLLENVR------------DLREGKPVQVPIYDFESSSRTGYRTVEVP 156 (621)
Q Consensus 110 vfQ---------------------dp~l~d~~tV~enL~------------~L~~gk~V~~p~yd~~~~~rsggq~qrVa 156 (621)
+++ +...-..+.+++-+. .+..+-...-.-.+......|||++.|++
T Consensus 152 v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~a 231 (614)
T KOG0927|consen 152 VVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAA 231 (614)
T ss_pred HhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHH
Confidence 110 000000001111111 11111111111233446788999999999
Q ss_pred CccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCC-CceehHhHHHHH
Q 038045 157 SSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQ-EPEEIIQQISET 216 (621)
Q Consensus 157 ~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~-Ti~~VtHd~eea 216 (621)
.+|+|+++|.++|+|||++.||+- .+.++. ..+.+... +++.+.|.+...
T Consensus 232 LAr~Lf~kP~LLLLDEPtnhLDle-------A~~wLe---e~L~k~d~~~lVi~sh~QDfl 282 (614)
T KOG0927|consen 232 LARALFQKPDLLLLDEPTNHLDLE-------AIVWLE---EYLAKYDRIILVIVSHSQDFL 282 (614)
T ss_pred HHHHHhcCCCEEEecCCccCCCHH-------HHHHHH---HHHHhccCceEEEEecchhhh
Confidence 999999999999999999999972 122333 33444444 788888887655
No 410
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.09 E-value=6.2e-12 Score=127.73 Aligned_cols=140 Identities=16% Similarity=0.175 Sum_probs=89.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC-CC-eeEEEECCcc----c------ccccccccCCCCc---------ccccchHHHH
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFM-PS-IAVISMDNYN----D------SSRVVDGNFDDPR---------LTDYDTLLEN 125 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLl-P~-sGvI~lDg~~----~------~~R~Ig~vfQdp~---------l~d~~tV~en 125 (621)
+++|+||||||||||+++|.+++ +. .+.+...+.. . ....++++||++. ..+..++.++
T Consensus 27 ~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~r~ 106 (251)
T cd03273 27 FNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVTRQ 106 (251)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEEEE
Confidence 79999999999999999999998 44 4566665431 0 1225778888752 1223333322
Q ss_pred HHH--------------------HhcCCCccC-------------------ccccccccCccCCceeecCCccEEE----
Q 038045 126 VRD--------------------LREGKPVQV-------------------PIYDFESSSRTGYRTVEVPSSRIVI---- 162 (621)
Q Consensus 126 L~~--------------------L~~gk~V~~-------------------p~yd~~~~~rsggq~qrVa~ArVLI---- 162 (621)
+.. +.+.-.+.. ...+.....+++|++++++.++++.
T Consensus 107 I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~~~ 186 (251)
T cd03273 107 IVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALLLF 186 (251)
T ss_pred EEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHhhc
Confidence 211 111001110 1122345678999999999999776
Q ss_pred EecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHH
Q 038045 163 IEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQIS 214 (621)
Q Consensus 163 vEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~e 214 (621)
..+.++++|||++.+|.. ....+.++.+.+. .|.+++.++|+.+
T Consensus 187 ~~~~illlDEPt~~ld~~-------~~~~~~~~l~~~~-~g~~ii~iSH~~~ 230 (251)
T cd03273 187 KPAPMYILDEVDAALDLS-------HTQNIGRMIKTHF-KGSQFIVVSLKEG 230 (251)
T ss_pred cCCCEEEEeCCCcCCCHH-------HHHHHHHHHHHHc-CCCEEEEEECCHH
Confidence 366899999999999973 2334444444443 4889999999943
No 411
>TIGR00318 cyaB adenylyl cyclase CyaB, putative. The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).
Probab=99.05 E-value=6.4e-10 Score=108.16 Aligned_cols=132 Identities=22% Similarity=0.316 Sum_probs=109.9
Q ss_pred CceeEEecCCCCCcccccceeEEeecCCeeEEEeeeeecCCCeEeccceeeEEE--eeeecceeccCceEEEEEeeccee
Q 038045 240 QTYDIYLLPPGEDPESCQSYLRMRNKDGKYSLMFEEWVTDIPFVISPRITFEVS--VRLLGGLMALGYTIATILKRSSHV 317 (621)
Q Consensus 240 ~~aDIYi~P~~~~~e~~~d~Irvr~~~g~~~L~f~e~i~d~~fIi~P~~~FeV~--~~~LgGll~lgy~i~~~~~~~~~i 317 (621)
...|+|..+|+........|+|+|..++.+.+++-+...++.+.+++..+++|. ......|.++||..++.++....+
T Consensus 32 ~q~D~Yfd~p~~~l~~~~~~LRiR~~~~~~~lT~Kgp~~~~~~~~~~E~e~~v~d~~~~~~iL~~LG~~~~~~v~K~R~~ 111 (174)
T TIGR00318 32 FQHDIYFSNPCRDFASTDEALRIRKLTGEKFVTYKGPKIDNESKTRKEIEFKIEDIENALQILKKLGFKKVYEVIKKRRI 111 (174)
T ss_pred ceEEEeecCCCcchhhCCcEEEEEEcCCcEEEEEeCCccCCcceEEEEEEEEECCHHHHHHHHHHCCCeEEEEEEEEEEE
Confidence 346888888887777777899999998899999876666677777776666663 223345678999999999999999
Q ss_pred eeCCCceEEehhhHhhcCceeEEEecccH---------HHHHHHHHHhCCCCCccchhHHHHHHH
Q 038045 318 FCDDRGVCVKIDWLEQLNRQYIQVQGKDR---------LIVKNVAEQLGLEGSYVPRTYIEQIQL 373 (621)
Q Consensus 318 ~~d~~gv~i~v~~le~l~~~~i~i~g~~r---------~~V~~~~~~L~l~g~~i~~~y~e~i~~ 373 (621)
|..+. +.+.+|+++.+| +|+.|-+.+. +.+.+++.+||+.+..+++||+|+++|
T Consensus 112 ~~l~~-~~i~lD~v~~lG-~FvEIE~~~~~~~~~~~~~~~i~~~~~~LGl~~~~~~~sY~ell~~ 174 (174)
T TIGR00318 112 YQTNE-LNVSIDDVEGLG-FFLEIEKIINNINDKDLALEEIFEIINQLGIKDNIERRSYLELLSL 174 (174)
T ss_pred EEECC-EEEEEEccCCCc-cEEEEEEecCCccchHHHHHHHHHHHHHcCCCcCcccccHHHHhhC
Confidence 99887 999999999998 9999999875 578999999999999999999999854
No 412
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.04 E-value=1.7e-09 Score=118.88 Aligned_cols=192 Identities=19% Similarity=0.195 Sum_probs=150.7
Q ss_pred ceeeecceeeeeC-cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc----c-----
Q 038045 35 IVPIQDPLSFEKG-FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND----S----- 103 (621)
Q Consensus 35 ~~~v~~~lsf~~G-~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~----~----- 103 (621)
...-+++++.... ....+++|||++..|| |+||+|-.|-|-+.|+..|+|+. +.+|.|.++|... .
T Consensus 256 ~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GE---IvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r 332 (501)
T COG3845 256 VVLEVEDLSVKDRRGVTAVKDVSFEVRAGE---IVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERR 332 (501)
T ss_pred eEEEEeeeEeecCCCCceeeeeeeEEecCc---EEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHH
Confidence 3445667766533 3578999999999999 99999999999999999999998 7789999999752 1
Q ss_pred cccccccCCCC---cccccchHHHHHHHHhcCC-------------------------CccCccccccccCccCCceeec
Q 038045 104 SRVVDGNFDDP---RLTDYDTLLENVRDLREGK-------------------------PVQVPIYDFESSSRTGYRTVEV 155 (621)
Q Consensus 104 ~R~Ig~vfQdp---~l~d~~tV~enL~~L~~gk-------------------------~V~~p~yd~~~~~rsggq~qrV 155 (621)
...++|++++. .+...+++.+|+..-.... .+..+.-+.....+|||..|++
T Consensus 333 ~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~ 412 (501)
T COG3845 333 RLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKL 412 (501)
T ss_pred hcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehh
Confidence 23578898875 4677788898886432211 1111112222467899999999
Q ss_pred CCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCce
Q 038045 156 PSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHT 235 (621)
Q Consensus 156 a~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~I 235 (621)
-.+|=+.-+|.+++..+|+-.||. ...+.+++-..+.++.|..+..+..++++.. ..+|++++|++|.+
T Consensus 413 IlaREl~~~p~lLI~~qPTrGLDv-------gA~~~I~~~l~e~r~~G~AVLLiS~dLDEil----~lsDrIaVi~~Gri 481 (501)
T COG3845 413 ILARELARRPDLLIAAQPTRGLDV-------GAIEFIHERLLELRDAGKAVLLISEDLDEIL----ELSDRIAVIYEGRI 481 (501)
T ss_pred hhhhhhccCCCEEEEcCCCccccH-------HHHHHHHHHHHHHHhcCCEEEEEehhHHHHH----HhhheeeeeeCCce
Confidence 999999999999999999999996 2345666666777888999999999999998 89999999999988
Q ss_pred eeccC
Q 038045 236 ETMEQ 240 (621)
Q Consensus 236 e~~~~ 240 (621)
.....
T Consensus 482 ~~~~~ 486 (501)
T COG3845 482 VGIVP 486 (501)
T ss_pred ecccc
Confidence 76533
No 413
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.04 E-value=2.5e-10 Score=135.56 Aligned_cols=114 Identities=10% Similarity=0.029 Sum_probs=83.0
Q ss_pred chHHHHHHHHhcCCC----------ccCc--cccccccCccCCceeecCCccEEEEec---ceeccccccCCCCeeEEec
Q 038045 120 DTLLENVRDLREGKP----------VQVP--IYDFESSSRTGYRTVEVPSSRIVIIEG---IYALSEKLRPLLDLRVSVT 184 (621)
Q Consensus 120 ~tV~enL~~L~~gk~----------V~~p--~yd~~~~~rsggq~qrVa~ArVLIvEG---~lLLlDEp~s~LDlkV~Vd 184 (621)
+++.+++.++..... +.+. ..+.....+|+|++|++..+++++.++ .++++|||+..||+.
T Consensus 792 ltv~E~l~~f~~~~~i~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~---- 867 (943)
T PRK00349 792 MTVEEALEFFEAIPKIARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFE---- 867 (943)
T ss_pred CcHHHHHHHHHhchhhhHHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHH----
Confidence 577888777643211 1221 234556788999999999999999998 899999999999973
Q ss_pred CCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcC------CCCceeeccCceeEE
Q 038045 185 GGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVY------PEGHTETMEQTYDIY 245 (621)
Q Consensus 185 ~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl------~eg~Ie~~~~~aDIY 245 (621)
+.+.+.++.+.+.+.|.|++.++|+++... .+|.+..+ ..|.+...+.+.+++
T Consensus 868 ---~~~~L~~~L~~l~~~G~TVIiitH~~~~i~-----~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~ 926 (943)
T PRK00349 868 ---DIRKLLEVLHRLVDKGNTVVVIEHNLDVIK-----TADWIIDLGPEGGDGGGEIVATGTPEEVA 926 (943)
T ss_pred ---HHHHHHHHHHHHHhCCCEEEEEecCHHHHH-----hCCEEEEecCCcCCCCCEEEEeCCHHHHH
Confidence 345555555556677999999999987753 36666677 567777777776664
No 414
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.03 E-value=7.9e-11 Score=116.64 Aligned_cols=138 Identities=12% Similarity=0.008 Sum_probs=86.4
Q ss_pred EEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCcccccccccccCCCCcccccchHHHHHHHH
Q 038045 50 VVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNYNDSSRVVDGNFDDPRLTDYDTLLENVRDL 129 (621)
Q Consensus 50 ~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~~~~~R~Ig~vfQdp~l~d~~tV~enL~~L 129 (621)
.+++++++.. |+ +++|+||||||||||+|+|++... +..+|.+... ..++||...+|...++.+++...
T Consensus 15 ~v~n~i~l~~--g~---~~~ltGpNg~GKSTllr~i~~~~~----l~~~G~~v~a--~~~~~q~~~l~~~~~~~d~l~~~ 83 (199)
T cd03283 15 RVANDIDMEK--KN---GILITGSNMSGKSTFLRTIGVNVI----LAQAGAPVCA--SSFELPPVKIFTSIRVSDDLRDG 83 (199)
T ss_pred eecceEEEcC--Cc---EEEEECCCCCChHHHHHHHHHHHH----HHHcCCEEec--CccCcccceEEEeccchhccccc
Confidence 3556665554 67 999999999999999999998551 2233433222 23677766789999999988652
Q ss_pred hcCCCccCccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceeh
Q 038045 130 REGKPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEI 209 (621)
Q Consensus 130 ~~gk~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~V 209 (621)
... +.... .+...-...+. ..++.+++.|||+..+|+.. ...+...+.+.+.+.|.+++.+
T Consensus 84 ~s~-------~~~e~-~~~~~iL~~~~-----~~~p~llllDEp~~glD~~~------~~~l~~~ll~~l~~~~~tiiiv 144 (199)
T cd03283 84 ISY-------FYAEL-RRLKEIVEKAK-----KGEPVLFLLDEIFKGTNSRE------RQAASAAVLKFLKNKNTIGIIS 144 (199)
T ss_pred cCh-------HHHHH-HHHHHHHHhcc-----CCCCeEEEEecccCCCCHHH------HHHHHHHHHHHHHHCCCEEEEE
Confidence 211 00000 00000000000 15788999999999999631 1123344555555678999999
Q ss_pred HhHHHHHh
Q 038045 210 IQQISETS 217 (621)
Q Consensus 210 tHd~eea~ 217 (621)
+|+++.+.
T Consensus 145 TH~~~~~~ 152 (199)
T cd03283 145 THDLELAD 152 (199)
T ss_pred cCcHHHHH
Confidence 99988764
No 415
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.01 E-value=2.7e-10 Score=126.01 Aligned_cols=163 Identities=15% Similarity=0.152 Sum_probs=109.1
Q ss_pred eeecceeeeeCcE-EEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccccccccccCCCC
Q 038045 37 PIQDPLSFEKGFF-VVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDSSRVVDGNFDDP 114 (621)
Q Consensus 37 ~v~~~lsf~~G~~-~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~~R~Ig~vfQdp 114 (621)
.++.+++|.|... .++++++|-+..++ -|+++||||||||||++.+.|.+ |..|.|.-..... +++--|+-
T Consensus 390 i~~~nv~F~y~~~~~iy~~l~fgid~~s---rvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~----~~~y~Qh~ 462 (614)
T KOG0927|consen 390 IMVQNVSFGYSDNPMIYKKLNFGIDLDS---RVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNK----LPRYNQHL 462 (614)
T ss_pred EEEeccccCCCCcchhhhhhhcccCccc---ceeEecCCCCchhhhHHHHhhcccccccccccccccc----chhhhhhh
Confidence 4567788876433 78999999999999 79999999999999999999999 9999886654311 11111111
Q ss_pred c--ccccchHHH-------------HHHHHhcCCCccCccccccccCccCCceeecCCccEEEEecceeccccccCCCCe
Q 038045 115 R--LTDYDTLLE-------------NVRDLREGKPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDL 179 (621)
Q Consensus 115 ~--l~d~~tV~e-------------nL~~L~~gk~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDl 179 (621)
. +--..+..+ .+..+...-...-...+.....+|.|++.+|..++.++-.|.++++|||++.||.
T Consensus 463 ~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi 542 (614)
T KOG0927|consen 463 AEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDI 542 (614)
T ss_pred HhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCc
Confidence 0 000111111 1111110001111112233467899999999999999999999999999999997
Q ss_pred eEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHH
Q 038045 180 RVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISET 216 (621)
Q Consensus 180 kV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea 216 (621)
.-+..+...+.+.--+++.|+||+.-.
T Consensus 543 ----------~tid~laeaiNe~~Ggvv~vSHDfrlI 569 (614)
T KOG0927|consen 543 ----------ETIDALAEAINEFPGGVVLVSHDFRLI 569 (614)
T ss_pred ----------hhHHHHHHHHhccCCceeeeechhhHH
Confidence 344555556666666888899996544
No 416
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.99 E-value=2e-10 Score=113.57 Aligned_cols=151 Identities=13% Similarity=0.094 Sum_probs=92.1
Q ss_pred EeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEE----EECCcc---cccccccccCCCCcccccch--
Q 038045 52 IRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVI----SMDNYN---DSSRVVDGNFDDPRLTDYDT-- 121 (621)
Q Consensus 52 Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI----~lDg~~---~~~R~Ig~vfQdp~l~d~~t-- 121 (621)
++++++.+.+| +.+|+||||||||||+.+|.-.+ ...... .++.+. .....+.+.|++...++...
T Consensus 12 ~~~~~l~f~~g----l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (198)
T cd03276 12 HRHLQIEFGPR----VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDANPLCV 87 (198)
T ss_pred eeeeEEecCCC----eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCCcCCH
Confidence 35555666443 68999999999999999998655 221100 011110 11223556666655444111
Q ss_pred H-HHHHHHHhcCCCccCccccccccCccCCceeecCCccEE----EEecceeccccccCCCCeeEEecCCchHHHHHHHH
Q 038045 122 L-LENVRDLREGKPVQVPIYDFESSSRTGYRTVEVPSSRIV----IIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVL 196 (621)
Q Consensus 122 V-~enL~~L~~gk~V~~p~yd~~~~~rsggq~qrVa~ArVL----IvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~ 196 (621)
. .+.+..+... ....+.....+++|+++++..++++ +.++.++++|||+..+|.. ....+.++.
T Consensus 88 ~~~~~~~~~l~~----~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~-------~~~~~~~~l 156 (198)
T cd03276 88 LSQDMARSFLTS----NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMV-------NRKISTDLL 156 (198)
T ss_pred HHHHHHHHHhcc----ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHH-------HHHHHHHHH
Confidence 1 1233233222 1223455678899999999998887 6899999999999999963 223333333
Q ss_pred HHH-HH--cCCCceehHhHHHHHh
Q 038045 197 RDI-QR--VGQEPEEIIQQISETS 217 (621)
Q Consensus 197 Rdl-~e--rG~Ti~~VtHd~eea~ 217 (621)
+.. .+ .+.++..++|+++.+.
T Consensus 157 ~~~~~~~~~~~~iii~th~~~~i~ 180 (198)
T cd03276 157 VKEAKKQPGRQFIFITPQDISGLA 180 (198)
T ss_pred HHHHhcCCCcEEEEEECCcccccc
Confidence 333 33 2357888999988775
No 417
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=7.2e-10 Score=119.93 Aligned_cols=157 Identities=11% Similarity=0.135 Sum_probs=107.1
Q ss_pred ecceeeee-CcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccccccccccCCCCc-
Q 038045 39 QDPLSFEK-GFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDSSRVVDGNFDDPR- 115 (621)
Q Consensus 39 ~~~lsf~~-G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~~R~Ig~vfQdp~- 115 (621)
+-+++|.| |..++++.++|-|.-.. .|+|+||||.|||||++.|.|-+ |..|...-+- +-.+|+.-|+..
T Consensus 589 lH~VtFgy~gqkpLFkkldFGiDmdS---RiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh----rL~iG~FdQh~~E 661 (807)
T KOG0066|consen 589 LHDVTFGYPGQKPLFKKLDFGIDMDS---RIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH----RLRIGWFDQHANE 661 (807)
T ss_pred cccccccCCCCCchhhcccccccccc---eeEEECCCCccHHHHHHHHhcCCCCCcchhhccc----eeeeechhhhhHH
Confidence 44678887 88999999999998888 79999999999999999999999 8777653321 123555444432
Q ss_pred -ccccchHHHHHHHHhcC---------CCccCc--cccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEe
Q 038045 116 -LTDYDTLLENVRDLREG---------KPVQVP--IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSV 183 (621)
Q Consensus 116 -l~d~~tV~enL~~L~~g---------k~V~~p--~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~V 183 (621)
+....|..+.+...-+- ....+. ........++||++.+|+.+...+-.|.++++|||+++||+
T Consensus 662 ~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDI---- 737 (807)
T KOG0066|consen 662 ALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDI---- 737 (807)
T ss_pred hhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcch----
Confidence 22233333333321100 000110 11223467899999999999999999999999999999997
Q ss_pred cCCchHHHHHHHHHHHHHcCCCceehHhH
Q 038045 184 TGGVHFDLVKRVLRDIQRVGQEPEEIIQQ 212 (621)
Q Consensus 184 d~~~d~~LirRI~Rdl~erG~Ti~~VtHd 212 (621)
+-+..+...+.+..-.++.|+|+
T Consensus 738 ------ESIDALaEAIney~GgVi~VsHD 760 (807)
T KOG0066|consen 738 ------ESIDALAEAINEYNGGVIMVSHD 760 (807)
T ss_pred ------hhHHHHHHHHHhccCcEEEEecc
Confidence 33334444445555577888887
No 418
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.93 E-value=5.8e-10 Score=109.78 Aligned_cols=133 Identities=11% Similarity=-0.017 Sum_probs=76.0
Q ss_pred EeecceEEeCCCcceEEEEECCCCCcHHHHHHHHH-hhC-CCee-EEEECCcccccccccccCCCCcccccchHHHHHHH
Q 038045 52 IRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKIL-NFM-PSIA-VISMDNYNDSSRVVDGNFDDPRLTDYDTLLENVRD 128 (621)
Q Consensus 52 Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~La-gLl-P~sG-vI~lDg~~~~~R~Ig~vfQdp~l~d~~tV~enL~~ 128 (621)
+-+++|.+.+|++ +++|+||||||||||++.|. ..+ +..| .+..... ..+++..|....+. ..+.+
T Consensus 17 ~~~~~~~i~~~~~--~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~----~~~~~~~~~~~~lg---~~~~l-- 85 (200)
T cd03280 17 VVPLDIQLGENKR--VLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEG----SSLPVFENIFADIG---DEQSI-- 85 (200)
T ss_pred eEcceEEECCCce--EEEEECCCCCChHHHHHHHHHHHHHHHcCCCcccccc----ccCcCccEEEEecC---chhhh--
Confidence 4478888999853 89999999999999999998 221 2222 1111110 01222222211111 00111
Q ss_pred HhcCCCccCccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCcee
Q 038045 129 LREGKPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEE 208 (621)
Q Consensus 129 L~~gk~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~ 208 (621)
+......++++++.....+. +.++.+++.|||+..+|+.. ...+.+.+.+.+.+.|.++..
T Consensus 86 ------------~~~~s~fs~g~~~~~~i~~~-~~~p~llllDEp~~glD~~~------~~~i~~~~l~~l~~~~~~vi~ 146 (200)
T cd03280 86 ------------EQSLSTFSSHMKNIARILQH-ADPDSLVLLDELGSGTDPVE------GAALAIAILEELLERGALVIA 146 (200)
T ss_pred ------------hcCcchHHHHHHHHHHHHHh-CCCCcEEEEcCCCCCCCHHH------HHHHHHHHHHHHHhcCCEEEE
Confidence 11112334444444444433 35888999999999999631 122334455666667899999
Q ss_pred hHhHHH
Q 038045 209 IIQQIS 214 (621)
Q Consensus 209 VtHd~e 214 (621)
++|+.+
T Consensus 147 ~tH~~~ 152 (200)
T cd03280 147 TTHYGE 152 (200)
T ss_pred ECCHHH
Confidence 999843
No 419
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=98.90 E-value=3.8e-10 Score=124.36 Aligned_cols=148 Identities=14% Similarity=0.165 Sum_probs=102.0
Q ss_pred CcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhCC-CeeEEEECCcccccccccccCCCCcc---------
Q 038045 47 GFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFMP-SIAVISMDNYNDSSRVVDGNFDDPRL--------- 116 (621)
Q Consensus 47 G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP-~sGvI~lDg~~~~~R~Ig~vfQdp~l--------- 116 (621)
....++..++|.+++|- -+.|+||||||||+|.|+|.|+-| ..|.+++ +...++-|+||-|..
T Consensus 493 ~~~vvv~~Ltf~i~~G~---hLLItGPNGCGKSSLfRILggLWPvy~g~L~~----P~~~~mFYIPQRPYms~gtlRDQI 565 (728)
T KOG0064|consen 493 AGDVLVPKLTFQIEPGM---HLLITGPNGCGKSSLFRILGGLWPVYNGLLSI----PRPNNIFYIPQRPYMSGGTLRDQI 565 (728)
T ss_pred CcceeecceeEEecCCc---eEEEECCCCccHHHHHHHHhccCcccCCeeec----CCCcceEeccCCCccCcCccccee
Confidence 34468999999999999 899999999999999999999986 4455543 233346667766531
Q ss_pred cccchHHHH----------------HH--HHhcCCCccCccccccccCccCCceeecCCccEEEEecceeccccccCCCC
Q 038045 117 TDYDTLLEN----------------VR--DLREGKPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLD 178 (621)
Q Consensus 117 ~d~~tV~en----------------L~--~L~~gk~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LD 178 (621)
...++..+. +. .+.....-.-...||+ +.++||++||++.||..-..|.|+++||-++..-
T Consensus 566 IYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWk-d~LsgGekQR~~mARm~yHrPkyalLDEcTsAvs 644 (728)
T KOG0064|consen 566 IYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWK-DVLSGGEKQRMGMARMFYHRPKYALLDECTSAVS 644 (728)
T ss_pred ecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHH-hhccchHHHHHHHHHHHhcCcchhhhhhhhcccc
Confidence 011111111 10 1111110011122333 5678999999999999999999999999998776
Q ss_pred eeEEecCCchHHHHHHHHHHHHHcCCCceehHhH
Q 038045 179 LRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQ 212 (621)
Q Consensus 179 lkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd 212 (621)
+ +...++-...+..|.+...|+|+
T Consensus 645 i----------dvE~~i~~~ak~~gi~llsithr 668 (728)
T KOG0064|consen 645 I----------DVEGKIFQAAKDAGISLLSITHR 668 (728)
T ss_pred c----------chHHHHHHHHHhcCceEEEeecC
Confidence 4 33455666677889999999998
No 420
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.90 E-value=5.4e-10 Score=120.54 Aligned_cols=158 Identities=16% Similarity=0.127 Sum_probs=110.7
Q ss_pred eeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC---------CCeeEEEECCcccccccccccCCCCc
Q 038045 45 EKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM---------PSIAVISMDNYNDSSRVVDGNFDDPR 115 (621)
Q Consensus 45 ~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl---------P~sGvI~lDg~~~~~R~Ig~vfQdp~ 115 (621)
..+...+++++||++++|+ +++|+|+|||||||++++|+|.. |++|.|.+--. ..-.+++....
T Consensus 392 r~ieryvlr~vNL~ikpGd---vvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~n----t~~a~iPge~E 464 (593)
T COG2401 392 RVIERYVLRNLNLEIKPGD---VVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKN----TVSALIPGEYE 464 (593)
T ss_pred eeeeeeeeeceeeEecCCC---eEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceecccc----chhhccCcccc
Confidence 3456779999999999999 99999999999999999999964 34555544211 11122332222
Q ss_pred -ccccchHHHHHHHH-----------hcCCCccCccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEe
Q 038045 116 -LTDYDTLLENVRDL-----------REGKPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSV 183 (621)
Q Consensus 116 -l~d~~tV~enL~~L-----------~~gk~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~V 183 (621)
.|...++.+++... ........-.|.....++|.||+.+..+|+++.-.|.+++.||..+.||...
T Consensus 465 p~f~~~tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~T-- 542 (593)
T COG2401 465 PEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELT-- 542 (593)
T ss_pred cccCchhHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHH--
Confidence 23444555554321 1111111223455567889999999999998888889999999999999752
Q ss_pred cCCchHHHHHHHHHHHHHcCCCceehHhHHHH
Q 038045 184 TGGVHFDLVKRVLRDIQRVGQEPEEIIQQISE 215 (621)
Q Consensus 184 d~~~d~~LirRI~Rdl~erG~Ti~~VtHd~ee 215 (621)
..+..+.+.+...+.|.|...++|+-+.
T Consensus 543 ----A~rVArkiselaRe~giTlivvThrpEv 570 (593)
T COG2401 543 ----AVRVARKISELAREAGITLIVVTHRPEV 570 (593)
T ss_pred ----HHHHHHHHHHHHHHhCCeEEEEecCHHH
Confidence 2367777777777889999999998544
No 421
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.88 E-value=2.1e-09 Score=127.53 Aligned_cols=90 Identities=8% Similarity=0.017 Sum_probs=66.9
Q ss_pred cccccCccCCceeecCCccEEEE---ecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHh
Q 038045 141 DFESSSRTGYRTVEVPSSRIVII---EGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETS 217 (621)
Q Consensus 141 d~~~~~rsggq~qrVa~ArVLIv---EG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~ 217 (621)
+.....+|+|+.|++..+++++. ++.++++|||+..||+ .+...+..+.+.+.+.|.|++.++|++....
T Consensus 823 ~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~-------~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~ 895 (924)
T TIGR00630 823 GQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHF-------DDIKKLLEVLQRLVDQGNTVVVIEHNLDVIK 895 (924)
T ss_pred cCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCH-------HHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 45567889999999999999987 4789999999999997 3345555555666677999999999987653
Q ss_pred ccccccchhhhcC------CCCceeeccCce
Q 038045 218 AKNLSVDQIKAVY------PEGHTETMEQTY 242 (621)
Q Consensus 218 ~R~v~~~d~iavl------~eg~Ie~~~~~a 242 (621)
.+|.+..+ ..|.+...+++.
T Consensus 896 -----~aD~ii~Lgp~~G~~gG~iv~~G~~~ 921 (924)
T TIGR00630 896 -----TADYIIDLGPEGGDGGGTIVASGTPE 921 (924)
T ss_pred -----hCCEEEEecCCccCCCCEEEEeCCHH
Confidence 35666666 455555444433
No 422
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.87 E-value=8.1e-10 Score=137.14 Aligned_cols=92 Identities=11% Similarity=0.013 Sum_probs=70.4
Q ss_pred cccccCccCCceeecCCccEEE---EecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHh
Q 038045 141 DFESSSRTGYRTVEVPSSRIVI---IEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETS 217 (621)
Q Consensus 141 d~~~~~rsggq~qrVa~ArVLI---vEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~ 217 (621)
+.....+|+|++|++..+++++ .++.++++|||+..||. .+.+.+.++.+.+.+.|.|++.++|+++..
T Consensus 804 ~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~-------~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i- 875 (1809)
T PRK00635 804 GRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHT-------HDIKALIYVLQSLTHQGHTVVIIEHNMHVV- 875 (1809)
T ss_pred cCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCH-------HHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-
Confidence 4556788999999999999997 69999999999999996 334555556666667799999999998865
Q ss_pred ccccccchhhhcCC------CCceeeccCceeE
Q 038045 218 AKNLSVDQIKAVYP------EGHTETMEQTYDI 244 (621)
Q Consensus 218 ~R~v~~~d~iavl~------eg~Ie~~~~~aDI 244 (621)
..+|++.+|. .|.+...+++.++
T Consensus 876 ----~~aDrVi~L~p~gg~~~G~iv~~Gtpeel 904 (1809)
T PRK00635 876 ----KVADYVLELGPEGGNLGGYLLASCSPEEL 904 (1809)
T ss_pred ----HhCCEEEEEccCCCCCCCEEEEeCCHHHH
Confidence 3456666674 4566666666554
No 423
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.86 E-value=6.8e-10 Score=112.83 Aligned_cols=64 Identities=11% Similarity=0.049 Sum_probs=49.8
Q ss_pred cCccCCceeecCCccEEEEe----cceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHH
Q 038045 145 SSRTGYRTVEVPSSRIVIIE----GIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISE 215 (621)
Q Consensus 145 ~~rsggq~qrVa~ArVLIvE----G~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~ee 215 (621)
..+++|+++++..+++++.+ +.++++|||++.||+. ....+..+.+.+.+.|.+++.++|+.+.
T Consensus 154 ~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~-------~~~~l~~~i~~~~~~g~~vi~isH~~~~ 221 (247)
T cd03275 154 DNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNT-------NVGKVASYIREQAGPNFQFIVISLKEEF 221 (247)
T ss_pred HHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHH-------HHHHHHHHHHHhccCCcEEEEEECCHHH
Confidence 67889999999999999875 7899999999999973 2334444555555558899999999554
No 424
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=98.85 E-value=6.3e-09 Score=104.09 Aligned_cols=190 Identities=12% Similarity=0.014 Sum_probs=124.9
Q ss_pred eeeecceeeee-CcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccccc-------c-
Q 038045 36 VPIQDPLSFEK-GFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDSS-------R- 105 (621)
Q Consensus 36 ~~v~~~lsf~~-G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~~-------R- 105 (621)
..-+.++.|.| +.-+++-++|+.++.|. -..++|.||||||||++.|+|-- ...|.|.+.|..... -
T Consensus 13 aievsgl~f~y~~~dP~~~Dfnldlp~gs---RcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgd 89 (291)
T KOG2355|consen 13 AIEVSGLQFKYKVSDPIFFDFNLDLPAGS---RCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGD 89 (291)
T ss_pred eEEEeccEEecccCCceEEEEeeccCCCc---eEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCc
Confidence 34455566654 45588999999999999 68899999999999999999976 455888888753211 0
Q ss_pred --cccccCCCCc-------ccccchHHHHHHHHhcC------CCccCc--cccccccCccCCceeecCCccEEEEeccee
Q 038045 106 --VVDGNFDDPR-------LTDYDTLLENVRDLREG------KPVQVP--IYDFESSSRTGYRTVEVPSSRIVIIEGIYA 168 (621)
Q Consensus 106 --~Ig~vfQdp~-------l~d~~tV~enL~~L~~g------k~V~~p--~yd~~~~~rsggq~qrVa~ArVLIvEG~lL 168 (621)
..|.-|-+-. +-....+.+.|...... +-+.+- ...++.+..+.||+.+|.+.--++--=.++
T Consensus 90 l~YLGgeW~~~~~~agevplq~D~sae~mifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~PfkVL 169 (291)
T KOG2355|consen 90 LSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKPFKVL 169 (291)
T ss_pred eeEecccccccccccccccccccccHHHHHhhccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhcccceeEE
Confidence 1111111110 11122344444322111 111111 134667888999999998776666666778
Q ss_pred ccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeec
Q 038045 169 LSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETM 238 (621)
Q Consensus 169 LlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~ 238 (621)
|+||++-.||.. ...+++.-++....++|.|+++.||-+.-.. +|...++.+..|.+.-.
T Consensus 170 LLDEVTVDLDVl------ARadLLeFlkeEce~RgatIVYATHIFDGLe----~Wpthl~yi~~Gkl~~~ 229 (291)
T KOG2355|consen 170 LLDEVTVDLDVL------ARADLLEFLKEECEQRGATIVYATHIFDGLE----TWPTHLVYIKSGKLVDN 229 (291)
T ss_pred EeeeeEeehHHH------HHHHHHHHHHHHHhhcCcEEEEEeeeccchh----hcchhEEEecCCeeeec
Confidence 889999888863 3346777788888899999999999987665 55555566666665543
No 425
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.84 E-value=3.8e-09 Score=126.52 Aligned_cols=182 Identities=15% Similarity=0.103 Sum_probs=135.4
Q ss_pred cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhCC----CeeEEEECCccc----ccccccccCCCCccccc
Q 038045 48 FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFMP----SIAVISMDNYND----SSRVVDGNFDDPRLTDY 119 (621)
Q Consensus 48 ~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP----~sGvI~lDg~~~----~~R~Ig~vfQdp~l~d~ 119 (621)
.+.++++++..+++|+ .+.++||.|||||||+++|+|.++ ..|.|+.||+.. .++.+.|+.|+.-.+++
T Consensus 127 ~~~il~~~sg~~~pg~---m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~ 203 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGE---MTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPE 203 (1391)
T ss_pred cceeecCcceeEcCCc---eEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccce
Confidence 4579999999999999 999999999999999999999872 467899999732 24678899999889999
Q ss_pred chHHHHHHHHhcCCCc-----cCc--cc------------------cc-----cccCccCCceeecCCccEEEEecceec
Q 038045 120 DTLLENVRDLREGKPV-----QVP--IY------------------DF-----ESSSRTGYRTVEVPSSRIVIIEGIYAL 169 (621)
Q Consensus 120 ~tV~enL~~L~~gk~V-----~~p--~y------------------d~-----~~~~rsggq~qrVa~ArVLIvEG~lLL 169 (621)
+||++.+.+..+.+.. +.. .+ |. -....+||++.|+..+..++..+..++
T Consensus 204 lTVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~ 283 (1391)
T KOG0065|consen 204 LTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILF 283 (1391)
T ss_pred eEEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceee
Confidence 9999999986543322 111 11 10 023457999999999999999999999
Q ss_pred cccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCc
Q 038045 170 SEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQT 241 (621)
Q Consensus 170 lDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~ 241 (621)
.||++.+||-. ...+.++.++...+..+.|.....+|-. ++.+..=|-+.+|++|++.-.+..
T Consensus 284 ~De~t~GLDSs------Tal~iik~lr~~a~~~~~t~~vsi~Q~s---~~~~~lFD~v~lL~eG~~iy~Gp~ 346 (1391)
T KOG0065|consen 284 WDEITRGLDSS------TAFQIIKALRQLAHITGATALVSILQPS---PEIYDLFDDVILLSEGYQIYQGPR 346 (1391)
T ss_pred eecccccccHH------HHHHHHHHHHHHHhhhcceEEEEeccCC---hHHHHhhhheeeeeccceEEeccH
Confidence 99999999963 4457777777777777888777766622 122222234445777766554443
No 426
>PRK08233 hypothetical protein; Provisional
Probab=98.84 E-value=1.5e-08 Score=96.51 Aligned_cols=113 Identities=19% Similarity=0.366 Sum_probs=72.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCcccccc--cccccCCCC---cccccchHHHHHHHHhcCCCccCcc
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNYNDSSR--VVDGNFDDP---RLTDYDTLLENVRDLREGKPVQVPI 139 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~~~~~R--~Ig~vfQdp---~l~d~~tV~enL~~L~~gk~V~~p~ 139 (621)
.++|+|.|++|||||||++.|+..++.+..+++|+++.... .+....... ..++...+.+.+..+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------- 75 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDNCPEDICKWIDKGANYSEWVLTPLIKDIQELIAK------- 75 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEcccCchhhhhhhhccCChhhhhhHHHHHHHHHHHcC-------
Confidence 35999999999999999999999986677888988743211 111001111 112222222222222111
Q ss_pred ccccccCccCCceeecCCccEEEEecceec-cccccCCCCeeEEecCCchHHHHHHHHHHHH
Q 038045 140 YDFESSSRTGYRTVEVPSSRIVIIEGIYAL-SEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQ 200 (621)
Q Consensus 140 yd~~~~~rsggq~qrVa~ArVLIvEG~lLL-lDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~ 200 (621)
....++|+|+.+.. .++....+|..+|++++.+..+.|++.|+..
T Consensus 76 ----------------~~~~~vivd~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~ 121 (182)
T PRK08233 76 ----------------SNVDYIIVDYPFAYLNSEMRQFIDVTIFIDTPLDIAMARRILRDFK 121 (182)
T ss_pred ----------------CCceEEEEeeehhhccHHHHHHcCEEEEEcCCHHHHHHHHHHHHhh
Confidence 01267888986654 4577788999999999999888888877653
No 427
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=98.78 E-value=1.7e-08 Score=102.25 Aligned_cols=136 Identities=26% Similarity=0.324 Sum_probs=99.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCC------------CeeEEEECCccccccccccc---------CCCCcccccchHHHH
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFMP------------SIAVISMDNYNDSSRVVDGN---------FDDPRLTDYDTLLEN 125 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLlP------------~sGvI~lDg~~~~~R~Ig~v---------fQdp~l~d~~tV~en 125 (621)
++|++|+.|+||||++..+....| -.-+|.||||+..++.+... -..|..||...+.+.
T Consensus 121 l~glag~pGtgkst~~a~v~~aWp~~~~~f~~e~i~iaiivPMDGFHlsr~~LD~f~dP~~AharRGapwTFD~~lfl~l 200 (323)
T KOG2702|consen 121 LTGLAGRPGTGKSTRIAAVDNAWPVNVNKFAQESINIAIIVPMDGFHLSRRCLDLFKDPQTAHARRGAPWTFDSNLFLQL 200 (323)
T ss_pred eeeeecCCCCcchhHHHHHHhhcchhhhhhhhhhcceeEEecccchhhhHHHHHhhcChHHHHhhcCCCcccCHHHHHHH
Confidence 999999999999999999988443 12357899997665543311 123556777777777
Q ss_pred HHHHh--cCCCccCccccccccCccCCceeecCCccEEEEecceecccc-----ccCCCCeeEEecCCchHHHHHHHHHH
Q 038045 126 VRDLR--EGKPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEK-----LRPLLDLRVSVTGGVHFDLVKRVLRD 198 (621)
Q Consensus 126 L~~L~--~gk~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDE-----p~s~LDlkV~Vd~~~d~~LirRI~Rd 198 (621)
+..++ ....+..|.||+..++....+--.-...|++|+||.|+|+++ ....+|.+++++.+.+. ...|+...
T Consensus 201 ~k~lkk~t~~~iyvPsFdHa~gDPv~DdicVs~~~rIvI~EGnYlLl~~~~Wkdi~k~~d~k~~idV~~~~-a~~RVa~R 279 (323)
T KOG2702|consen 201 CKILKKTTIPDIYVPSFDHALGDPVPDDICVSKFTRIVILEGNYLLLDQENWKDIYKTLDDKYKIDVDYEA-AEERVAKR 279 (323)
T ss_pred HHHHhhcCCCceeccccccccCCCCccceeecccceEEEEeccEEEecCccHHHHHHHhhhheeccccHHH-HHHHHHHH
Confidence 77776 345788899999998887755444456899999999999975 45789999999887665 44455444
Q ss_pred HHHcC
Q 038045 199 IQRVG 203 (621)
Q Consensus 199 l~erG 203 (621)
+...|
T Consensus 280 Hl~sG 284 (323)
T KOG2702|consen 280 HLQSG 284 (323)
T ss_pred hhccc
Confidence 44556
No 428
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.76 E-value=1.1e-08 Score=92.68 Aligned_cols=69 Identities=13% Similarity=0.030 Sum_probs=54.4
Q ss_pred EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccc-------ccccccccCCCCcccccch
Q 038045 49 FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNYND-------SSRVVDGNFDDPRLTDYDT 121 (621)
Q Consensus 49 ~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~~~-------~~R~Ig~vfQdp~l~d~~t 121 (621)
.++|++++|.+++|+ +++|.||||||||||++++. .|.+.++|... ..+..++++|+ .-+.+
T Consensus 2 ~~aL~~vsl~i~~ge---~v~I~GpSGsGKSTLl~~l~-----~G~i~~~g~di~~~~~~~~~~~~~~~~q~---lf~~t 70 (107)
T cd00820 2 TTSLHGVLVDVYGKV---GVLITGDSGIGKTELALELI-----KRKHRLVGDDNVEIREDSKDELIGRNPEL---GLEIR 70 (107)
T ss_pred ceEEEeeEEEEcCCE---EEEEEcCCCCCHHHHHHHhh-----CCeEEEeeEeHHHhhhhhcCCEEEEechh---cchhh
Confidence 468999999999999 99999999999999999986 56677776521 22345667666 44678
Q ss_pred HHHHHHH
Q 038045 122 LLENVRD 128 (621)
Q Consensus 122 V~enL~~ 128 (621)
+++||..
T Consensus 71 i~~Ni~~ 77 (107)
T cd00820 71 LRLNIFL 77 (107)
T ss_pred HHhhcee
Confidence 9999876
No 429
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.66 E-value=4.1e-09 Score=103.82 Aligned_cols=131 Identities=12% Similarity=0.060 Sum_probs=74.0
Q ss_pred cceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC--CCeeEEEECCcccc-cccccccCCCCcccccchHHHHHHHHhc
Q 038045 55 CQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM--PSIAVISMDNYNDS-SRVVDGNFDDPRLTDYDTLLENVRDLRE 131 (621)
Q Consensus 55 IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl--P~sGvI~lDg~~~~-~R~Ig~vfQdp~l~d~~tV~enL~~L~~ 131 (621)
.++.+.+|+ +++|+||||||||||+++|++.. +..|. +.+. ...+++..+ .+......+++..
T Consensus 22 ~~~~l~~~~---~~~l~G~Ng~GKStll~~i~~~~~~~~~g~-----~~~~~~~~i~~~dq---i~~~~~~~d~i~~--- 87 (202)
T cd03243 22 NDINLGSGR---LLLITGPNMGGKSTYLRSIGLAVLLAQIGC-----FVPAESASIPLVDR---IFTRIGAEDSISD--- 87 (202)
T ss_pred eeEEEcCCe---EEEEECCCCCccHHHHHHHHHHHHHHHcCC-----CccccccccCCcCE---EEEEecCcccccC---
Confidence 345566778 99999999999999999999543 22221 1111 112333221 1111111111110
Q ss_pred CCCccCccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHh
Q 038045 132 GKPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQ 211 (621)
Q Consensus 132 gk~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtH 211 (621)
.....+. +.+++...-..+.++.++++|||+..+|+.. ...+.+.+.+.+.+.+.+++.++|
T Consensus 88 -----------~~s~~~~-e~~~l~~i~~~~~~~~llllDEp~~gld~~~------~~~l~~~ll~~l~~~~~~vi~~tH 149 (202)
T cd03243 88 -----------GRSTFMA-ELLELKEILSLATPRSLVLIDELGRGTSTAE------GLAIAYAVLEHLLEKGCRTLFATH 149 (202)
T ss_pred -----------CceeHHH-HHHHHHHHHHhccCCeEEEEecCCCCCCHHH------HHHHHHHHHHHHHhcCCeEEEECC
Confidence 0011111 1112222222334788999999999999732 223556666666677899999999
Q ss_pred HHHHHh
Q 038045 212 QISETS 217 (621)
Q Consensus 212 d~eea~ 217 (621)
+.+...
T Consensus 150 ~~~~~~ 155 (202)
T cd03243 150 FHELAD 155 (202)
T ss_pred hHHHHH
Confidence 976553
No 430
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.63 E-value=8.7e-09 Score=112.47 Aligned_cols=158 Identities=14% Similarity=0.198 Sum_probs=101.4
Q ss_pred EeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEE----CCc---c-------------ccc----ccccccCCC
Q 038045 59 AQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISM----DNY---N-------------DSS----RVVDGNFDD 113 (621)
Q Consensus 59 I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~l----Dg~---~-------------~~~----R~Ig~vfQd 113 (621)
..+|. ++||+|+||-||||.+++|+|.+ |+-|.-.- |.- + ... .+..||---
T Consensus 97 pr~G~---V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~i 173 (591)
T COG1245 97 PRPGK---VVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLI 173 (591)
T ss_pred CCCCc---EEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHH
Confidence 44566 99999999999999999999999 87554321 110 0 000 011111111
Q ss_pred CcccccchHHHHHHHHhcCC-------Ccc-CccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecC
Q 038045 114 PRLTDYDTLLENVRDLREGK-------PVQ-VPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTG 185 (621)
Q Consensus 114 p~l~d~~tV~enL~~L~~gk-------~V~-~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~ 185 (621)
|..+. -++.+.|...-+.. ... ...+++..+++|||+.|+++++.++.-++.+.+.|||.+.||.+-++
T Consensus 174 Pk~~K-G~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl-- 250 (591)
T COG1245 174 PKVVK-GKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRL-- 250 (591)
T ss_pred HHHhc-chHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHH--
Confidence 11111 13444443322111 011 13466778899999999999999999999999999999999985322
Q ss_pred CchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCC
Q 038045 186 GVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYP 231 (621)
Q Consensus 186 ~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~ 231 (621)
...++.|.+.+.++++..|.||+...- .++|.+.+++
T Consensus 251 -----~~ar~Irel~~~~k~ViVVEHDLavLD----~lsD~vhI~Y 287 (591)
T COG1245 251 -----NAARVIRELAEDGKYVIVVEHDLAVLD----YLSDFVHILY 287 (591)
T ss_pred -----HHHHHHHHHhccCCeEEEEechHHHHH----HhhheeEEEe
Confidence 334566666666899999999987653 3444444444
No 431
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=2.1e-08 Score=108.85 Aligned_cols=162 Identities=15% Similarity=0.204 Sum_probs=97.7
Q ss_pred eecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC---C-CeeEEEE------CCccc-----
Q 038045 38 IQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM---P-SIAVISM------DNYND----- 102 (621)
Q Consensus 38 v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl---P-~sGvI~l------Dg~~~----- 102 (621)
-.++++.+--...++.+.+|.|-.|. .+|++||||-|||||++.|+..- | ...++.. |+...
T Consensus 266 KiEnF~ISA~Gk~LFvnA~L~Iv~GR---RYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl 342 (807)
T KOG0066|consen 266 KIENFDISAQGKLLFVNASLTIVYGR---RYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVL 342 (807)
T ss_pred eeeeeeeecccceeeeccceEEEecc---eecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHH
Confidence 45667777667788999999999999 79999999999999999998743 3 4333322 22200
Q ss_pred --ccccccc---------cCCCCcccccc---hHHHHHHHHh------------cCCCccCccccccccCccCCceeecC
Q 038045 103 --SSRVVDG---------NFDDPRLTDYD---TLLENVRDLR------------EGKPVQVPIYDFESSSRTGYRTVEVP 156 (621)
Q Consensus 103 --~~R~Ig~---------vfQdp~l~d~~---tV~enL~~L~------------~gk~V~~p~yd~~~~~rsggq~qrVa 156 (621)
..++..+ .+..-...-.. .+++.+..+. .+-.....--++-+...+||.+.+|+
T Consensus 343 ~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvS 422 (807)
T KOG0066|consen 343 KADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVS 422 (807)
T ss_pred HhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehh
Confidence 0001100 01110110011 1122221111 11111111122334567899999999
Q ss_pred CccEEEEecceeccccccCCCCee--EEecCCchHHHHHHHHHHHHHcCCCceehHhHHH
Q 038045 157 SSRIVIIEGIYALSEKLRPLLDLR--VSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQIS 214 (621)
Q Consensus 157 ~ArVLIvEG~lLLlDEp~s~LDlk--V~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~e 214 (621)
.+|++.+||.++.+|||++.||+- +|++ .. ++-...|...|.|++.
T Consensus 423 LARALflEPTLLMLDEPTNHLDLNAVIWLd---------NY---LQgWkKTLLIVSHDQg 470 (807)
T KOG0066|consen 423 LARALFLEPTLLMLDEPTNHLDLNAVIWLD---------NY---LQGWKKTLLIVSHDQG 470 (807)
T ss_pred HHHHHhcCceeeeecCCccccccceeeehh---------hH---HhhhhheeEEEecccc
Confidence 999999999999999999999974 3332 22 2333568888888853
No 432
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=4.2e-08 Score=108.43 Aligned_cols=160 Identities=11% Similarity=0.036 Sum_probs=113.3
Q ss_pred ceeeeeC--cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccccccccccCCCCccc
Q 038045 41 PLSFEKG--FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDSSRVVDGNFDDPRLT 117 (621)
Q Consensus 41 ~lsf~~G--~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~~R~Ig~vfQdp~l~ 117 (621)
.++|+|. .++.+.++++.++-.+ -++++|+||+||||+++++.+-+ |..|.+.... +++++|.+|+---+
T Consensus 367 ~V~f~y~p~~y~~~~~~~~d~e~~s---Ri~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~----r~ri~~f~Qhhvd~ 439 (582)
T KOG0062|consen 367 YVAFEYTPSEYQWRKQLGLDRESDS---RISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP----RLRIKYFAQHHVDF 439 (582)
T ss_pred eeeccCCCcchhhhhccCCccchhh---hhheeccCchhHHHHHHHHhccCCcccceeeecc----cceecchhHhhhhH
Confidence 3556664 3369999999999998 69999999999999999999988 8888887754 44677777764322
Q ss_pred ccch--HHHHHHHHhcCC------------CccCccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEe
Q 038045 118 DYDT--LLENVRDLREGK------------PVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSV 183 (621)
Q Consensus 118 d~~t--V~enL~~L~~gk------------~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~V 183 (621)
-.+. ..+.++....|+ .+.-+...+....+||||+.+|+.|.+....|.++++|||++.||.
T Consensus 440 l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~---- 515 (582)
T KOG0062|consen 440 LDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDR---- 515 (582)
T ss_pred HHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccH----
Confidence 1111 111111122221 1111223334567899999999999999999999999999999996
Q ss_pred cCCchHHHHHHHHHHHHHcCCCceehHhHHHHHh
Q 038045 184 TGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETS 217 (621)
Q Consensus 184 d~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~ 217 (621)
+-+..+.+-+...+--++.|+|+-+-..
T Consensus 516 ------dsl~AL~~Al~~F~GGVv~VSHd~~fi~ 543 (582)
T KOG0062|consen 516 ------DSLGALAKALKNFNGGVVLVSHDEEFIS 543 (582)
T ss_pred ------HHHHHHHHHHHhcCCcEEEEECcHHHHh
Confidence 3444455555555668899999977664
No 433
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.58 E-value=2.5e-08 Score=99.51 Aligned_cols=138 Identities=9% Similarity=-0.022 Sum_probs=83.6
Q ss_pred cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC--CCeeEEEECCcccccccccccCCCCcccccchHHHH
Q 038045 48 FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM--PSIAVISMDNYNDSSRVVDGNFDDPRLTDYDTLLEN 125 (621)
Q Consensus 48 ~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl--P~sGvI~lDg~~~~~R~Ig~vfQdp~l~d~~tV~en 125 (621)
...+.+++++...+|+ +++|+||||+||||++++++++. -..|. ++ |+.+...++.++
T Consensus 15 ~~~v~~~~~~~~~~~~---~~~l~G~n~~GKstll~~i~~~~~la~~G~--------------~v---pa~~~~l~~~d~ 74 (204)
T cd03282 15 KNFIPNDIYLTRGSSR---FHIITGPNMSGKSTYLKQIALLAIMAQIGC--------------FV---PAEYATLPIFNR 74 (204)
T ss_pred CcEEEeeeEEeeCCCc---EEEEECCCCCCHHHHHHHHHHHHHHHHcCC--------------Cc---chhhcCccChhh
Confidence 4457899999999999 99999999999999999998764 11111 11 222223333444
Q ss_pred HHHHhcC-CCccCccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCC
Q 038045 126 VRDLREG-KPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQ 204 (621)
Q Consensus 126 L~~L~~g-k~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~ 204 (621)
|...... .... ......+.+..+ +...-..+.++.+++.|||...+|+. ....+...+.+.+.+.|.
T Consensus 75 I~~~~~~~d~~~-----~~~S~fs~e~~~-~~~il~~~~~~~lvllDE~~~gt~~~------~~~~l~~~il~~l~~~~~ 142 (204)
T cd03282 75 LLSRLSNDDSME-----RNLSTFASEMSE-TAYILDYADGDSLVLIDELGRGTSSA------DGFAISLAILECLIKKES 142 (204)
T ss_pred eeEecCCccccc-----hhhhHHHHHHHH-HHHHHHhcCCCcEEEeccccCCCCHH------HHHHHHHHHHHHHHhcCC
Confidence 3221111 0011 111112222221 21112234568899999999999863 123445667777777799
Q ss_pred CceehHhHHHHHh
Q 038045 205 EPEEIIQQISETS 217 (621)
Q Consensus 205 Ti~~VtHd~eea~ 217 (621)
+.+.++|+.+...
T Consensus 143 ~~i~~TH~~~l~~ 155 (204)
T cd03282 143 TVFFATHFRDIAA 155 (204)
T ss_pred EEEEECChHHHHH
Confidence 9999999987664
No 434
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.56 E-value=4.7e-08 Score=97.92 Aligned_cols=70 Identities=9% Similarity=0.037 Sum_probs=48.9
Q ss_pred cccccCccCCceeecCCc----cEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHc-C-CCceehHhHHH
Q 038045 141 DFESSSRTGYRTVEVPSS----RIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRV-G-QEPEEIIQQIS 214 (621)
Q Consensus 141 d~~~~~rsggq~qrVa~A----rVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~er-G-~Ti~~VtHd~e 214 (621)
+..+..+++|+++++..+ +.++.+|.+++.|||+..+|+. ....+.++.+...+. | .+++.++|++.
T Consensus 121 ~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~-------~~~~i~~~l~~~~~~~g~~~viiith~~~ 193 (213)
T cd03277 121 ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPT-------NERKVFDMLVETACKEGTSQYFLITPKLL 193 (213)
T ss_pred ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHH-------HHHHHHHHHHHHhhcCCCceEEEEchhhc
Confidence 445678899998865543 3346899999999999999973 233444444444444 5 47999999986
Q ss_pred HHh
Q 038045 215 ETS 217 (621)
Q Consensus 215 ea~ 217 (621)
+..
T Consensus 194 ~~~ 196 (213)
T cd03277 194 PGL 196 (213)
T ss_pred cCC
Confidence 665
No 435
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.50 E-value=5.8e-08 Score=92.73 Aligned_cols=126 Identities=13% Similarity=0.075 Sum_probs=78.0
Q ss_pred cceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccccccccc-cCCCCcccccchHHHHHHHHhcC
Q 038045 55 CQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDSSRVVDG-NFDDPRLTDYDTLLENVRDLREG 132 (621)
Q Consensus 55 IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~~R~Ig~-vfQdp~l~d~~tV~enL~~L~~g 132 (621)
.++.+.++. ++.|+|||||||||+++.+...+ ...+.+...+. ...++ ++.....+
T Consensus 14 ~~i~~~~~~---~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~----~~~g~~~~~~~~~~--------------- 71 (162)
T cd03227 14 NDVTFGEGS---LTIITGPNGSGKSTILDAIGLALGGAQSATRRRSG----VKAGCIVAAVSAEL--------------- 71 (162)
T ss_pred cEEecCCCC---EEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCc----ccCCCcceeeEEEE---------------
Confidence 333444554 89999999999999999987765 33222221100 01111 11100000
Q ss_pred CCccCccccccccCccCCceeecCCccEEEE----ecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCcee
Q 038045 133 KPVQVPIYDFESSSRTGYRTVEVPSSRIVII----EGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEE 208 (621)
Q Consensus 133 k~V~~p~yd~~~~~rsggq~qrVa~ArVLIv----EG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~ 208 (621)
-+.....++|+.+++..++++.. ++.+++.|||...+|+. ....+...+.+...+ |.+++.
T Consensus 72 --------i~~~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~------~~~~l~~~l~~~~~~-~~~vii 136 (162)
T cd03227 72 --------IFTRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPR------DGQALAEAILEHLVK-GAQVIV 136 (162)
T ss_pred --------ehheeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHH------HHHHHHHHHHHHHhc-CCEEEE
Confidence 01112367888888888888876 67899999999999973 222344445554444 889999
Q ss_pred hHhHHHHHh
Q 038045 209 IIQQISETS 217 (621)
Q Consensus 209 VtHd~eea~ 217 (621)
++|+.+...
T Consensus 137 ~TH~~~~~~ 145 (162)
T cd03227 137 ITHLPELAE 145 (162)
T ss_pred EcCCHHHHH
Confidence 999987654
No 436
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.46 E-value=6.1e-08 Score=97.78 Aligned_cols=133 Identities=14% Similarity=0.088 Sum_probs=75.8
Q ss_pred cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC--CCeeEEEECCcccccccccccCCCCcccccchHHHH
Q 038045 48 FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM--PSIAVISMDNYNDSSRVVDGNFDDPRLTDYDTLLEN 125 (621)
Q Consensus 48 ~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl--P~sGvI~lDg~~~~~R~Ig~vfQdp~l~d~~tV~en 125 (621)
...+..++++...+++ +++|.||||+||||+++.++-.. ...| . +++.+...++ ..+.
T Consensus 16 ~~~v~~~~~~~~~~~~---~~~l~G~n~~GKstll~~i~~~~~la~~g-----~---------~vpa~~~~~~---~~~~ 75 (222)
T cd03285 16 VAFIPNDVTLTRGKSR---FLIITGPNMGGKSTYIRQIGVIVLMAQIG-----C---------FVPCDSADIP---IVDC 75 (222)
T ss_pred CCeEEeeEEEeecCCe---EEEEECCCCCChHHHHHHHHHHHHHHHhC-----C---------CcCcccEEEe---ccce
Confidence 3457889999998888 99999999999999999987432 1111 0 2222211111 0000
Q ss_pred HHHHhcCCCccCccccccccCccCCceeecCCccEE--EEecceeccccc---cCCCCeeEEecCCchHHHHHHHHHHHH
Q 038045 126 VRDLREGKPVQVPIYDFESSSRTGYRTVEVPSSRIV--IIEGIYALSEKL---RPLLDLRVSVTGGVHFDLVKRVLRDIQ 200 (621)
Q Consensus 126 L~~L~~gk~V~~p~yd~~~~~rsggq~qrVa~ArVL--IvEG~lLLlDEp---~s~LDlkV~Vd~~~d~~LirRI~Rdl~ 200 (621)
+.. .+.. .+......|.+..+....+.++ +-++.++++||| ++.+|.. ...+.+.+.+.
T Consensus 76 il~-----~~~l--~d~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~---------~~~~~il~~l~ 139 (222)
T cd03285 76 ILA-----RVGA--SDSQLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGF---------GLAWAIAEYIA 139 (222)
T ss_pred eEe-----eecc--ccchhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHH---------HHHHHHHHHHH
Confidence 000 0000 0111223444444444455555 678899999999 7778853 12233333333
Q ss_pred H-cCCCceehHhHHHHHh
Q 038045 201 R-VGQEPEEIIQQISETS 217 (621)
Q Consensus 201 e-rG~Ti~~VtHd~eea~ 217 (621)
+ .|.++..++|. .+..
T Consensus 140 ~~~~~~vlisTH~-~el~ 156 (222)
T cd03285 140 TQIKCFCLFATHF-HELT 156 (222)
T ss_pred hcCCCeEEEEech-HHHH
Confidence 3 58899999995 4443
No 437
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=98.45 E-value=5.7e-08 Score=94.74 Aligned_cols=123 Identities=16% Similarity=0.152 Sum_probs=75.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC-CCeeEEEE-------CCcccc---cccccccCCCCcccccchHHHHHHHHhcCCCc
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFM-PSIAVISM-------DNYNDS---SRVVDGNFDDPRLTDYDTLLENVRDLREGKPV 135 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLl-P~sGvI~l-------Dg~~~~---~R~Ig~vfQdp~l~d~~tV~enL~~L~~gk~V 135 (621)
+.+|+||||||||+++.+|.-.+ ........ .+.... ...+...|++. +..+..++..
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~-----------~~~~~~~~~~ 92 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFDKS-----------YFLVLQGKVE 92 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEEEEEECc-----------eEEecCCcCc
Confidence 78999999999999999987765 11111110 111000 01122233222 1111222222
Q ss_pred cCccccccccCccCCceeecCCccEEE----EecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHh
Q 038045 136 QVPIYDFESSSRTGYRTVEVPSSRIVI----IEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQ 211 (621)
Q Consensus 136 ~~p~yd~~~~~rsggq~qrVa~ArVLI----vEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtH 211 (621)
+ -.++|+++++..+++++ ..|.++++|||.+.+|+.. ...+.++.+.+.+.|.+++.++|
T Consensus 93 ~---------~LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~-------~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 93 Q---------ILSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTN-------RRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred c---------cCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHH-------HHHHHHHHHHHHhCCCEEEEEEC
Confidence 2 16888999999988875 5889999999999999742 23344444444555789999999
Q ss_pred HHHHH
Q 038045 212 QISET 216 (621)
Q Consensus 212 d~eea 216 (621)
+.+..
T Consensus 157 ~~~~~ 161 (178)
T cd03239 157 KKEMF 161 (178)
T ss_pred CHHHH
Confidence 97644
No 438
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.44 E-value=7.3e-08 Score=96.75 Aligned_cols=131 Identities=13% Similarity=0.114 Sum_probs=77.9
Q ss_pred EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC--CCeeEEEECCccc-ccccccccCCCCcccccchHHHH
Q 038045 49 FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM--PSIAVISMDNYND-SSRVVDGNFDDPRLTDYDTLLEN 125 (621)
Q Consensus 49 ~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl--P~sGvI~lDg~~~-~~R~Ig~vfQdp~l~d~~tV~en 125 (621)
..+..++++...+ + +++|+|||||||||+++.+++.. ...|. +.+ ....++++. ..|.++++.++
T Consensus 18 ~~v~n~~~l~~~~-~---~~~l~Gpn~sGKstllr~i~~~~~l~~~g~-----~vp~~~~~i~~~~---~i~~~~~~~~~ 85 (216)
T cd03284 18 PFVPNDTELDPER-Q---ILLITGPNMAGKSTYLRQVALIALLAQIGS-----FVPASKAEIGVVD---RIFTRIGASDD 85 (216)
T ss_pred ceEeeeEEecCCc-e---EEEEECCCCCChHHHHHHHHHHHHHhccCC-----eeccccceeccee---eEeccCCchhh
Confidence 3477888888765 6 89999999999999999998754 22221 111 223455543 24566666666
Q ss_pred HHHHhcCCCccCccccccccCccCCceeecCCccEEEEecceeccccc---cCCCCeeEEecCCchHHHHHHHHHHHHHc
Q 038045 126 VRDLREGKPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKL---RPLLDLRVSVTGGVHFDLVKRVLRDIQRV 202 (621)
Q Consensus 126 L~~L~~gk~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp---~s~LDlkV~Vd~~~d~~LirRI~Rdl~er 202 (621)
+.... ..|.. +...+...-....++.++++||| ++.+|.. .+.+.+.+.+.+.
T Consensus 86 ls~g~-------s~f~~--------e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~---------~~~~~il~~l~~~ 141 (216)
T cd03284 86 LAGGR-------STFMV--------EMVETANILNNATERSLVLLDEIGRGTSTYDGL---------SIAWAIVEYLHEK 141 (216)
T ss_pred hccCc-------chHHH--------HHHHHHHHHHhCCCCeEEEEecCCCCCChHHHH---------HHHHHHHHHHHhc
Confidence 64311 00000 00001000011246778999999 6666741 2445566666666
Q ss_pred -CCCceehHhHHHH
Q 038045 203 -GQEPEEIIQQISE 215 (621)
Q Consensus 203 -G~Ti~~VtHd~ee 215 (621)
+.+++.++|+.+.
T Consensus 142 ~~~~vi~~TH~~~l 155 (216)
T cd03284 142 IGAKTLFATHYHEL 155 (216)
T ss_pred cCCcEEEEeCcHHH
Confidence 8899999999643
No 439
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=98.42 E-value=4.4e-07 Score=101.95 Aligned_cols=154 Identities=18% Similarity=0.209 Sum_probs=87.0
Q ss_pred eeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccccc----ccccccCCCCccc
Q 038045 42 LSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNYNDSS----RVVDGNFDDPRLT 117 (621)
Q Consensus 42 lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~~~~~----R~Ig~vfQdp~l~ 117 (621)
+....|...+++|+-+.+ ++. +|+|.|||||||||+++.|+..+ +...+..|.++... ...++.++++..+
T Consensus 265 ~A~~~g~~RLIDN~~~~~-~~~---ii~i~G~sgsGKst~a~~la~~l-~~~~~d~g~~YR~~a~~~l~~~~~~~~~~~l 339 (512)
T PRK13477 265 IAVRCGSTRLIDNVFLMK-RQP---IIAIDGPAGAGKSTVTRAVAKKL-GLLYLDTGAMYRAVTWLVLQEGIDPQDEEAL 339 (512)
T ss_pred EEEEeCCeEEEeeeEecc-CCc---EEEEECCCCCCHHHHHHHHHHHc-CCeEecCCceehHHHHHHHHcCcCCcCHHHH
Confidence 344568889999999866 555 99999999999999999999887 33334344443221 1123333333221
Q ss_pred ccchHHHHHHHHh-----cCCCccCccccccccCccCC--------------------ceeecCCccEEEEecceecccc
Q 038045 118 DYDTLLENVRDLR-----EGKPVQVPIYDFESSSRTGY--------------------RTVEVPSSRIVIIEGIYALSEK 172 (621)
Q Consensus 118 d~~tV~enL~~L~-----~gk~V~~p~yd~~~~~rsgg--------------------q~qrVa~ArVLIvEG~lLLlDE 172 (621)
..+.+++.... .+..+.++.++....-++.. .++..+...-+|+||.- ....
T Consensus 340 --~~l~~~l~~~~~~~~~~~~~i~~~~~dv~~~iRs~eV~~~vS~ia~~p~VR~~l~~~qr~~~~~~~iV~eGRD-igtv 416 (512)
T PRK13477 340 --AELLSDLKIELKPSSGSPQRVWINGEDVTEAIRSPEVTSSVSAIAAQPAVRQALVKQQQRIGEKGGLVAEGRD-IGTH 416 (512)
T ss_pred --HHHHhcCCeeeccCCCCCceEEeCCcchHhhhcchhHHHHHHHHhCCHHHHHHHHHHHHHHhhcCCEEEEccc-ceeE
Confidence 11111222111 11123444444332211110 01112223358888853 2334
Q ss_pred ccCCCCeeEEecCCchHHHHHHHHHHHHHcCC
Q 038045 173 LRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQ 204 (621)
Q Consensus 173 p~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~ 204 (621)
+++..|+|+|++++.+.+..||..+. .++|.
T Consensus 417 V~P~AdlKIfL~As~evRa~RR~~~l-~~Rpl 447 (512)
T PRK13477 417 VFPDAELKIFLTASVEERARRRALDL-QAQGF 447 (512)
T ss_pred EcCCCCEEEEEECCHHHHHHHHHhhh-hhCCC
Confidence 56778999999999998777776553 35554
No 440
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=98.39 E-value=7.2e-07 Score=88.97 Aligned_cols=124 Identities=19% Similarity=0.340 Sum_probs=82.4
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCcccccccc--ccc-CCCC---cccccchHHHHHHHHhcCC-Ccc
Q 038045 64 GIILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNYNDSSRVV--DGN-FDDP---RLTDYDTLLENVRDLREGK-PVQ 136 (621)
Q Consensus 64 ~~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~~~~~R~I--g~v-fQdp---~l~d~~tV~enL~~L~~gk-~V~ 136 (621)
+.+||||.|.+-||||||++.+..++|++..|+-|+|+.....+ ++. +++. ...+...+.+.++....+. ...
T Consensus 3 K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~~~~~~~ 82 (225)
T KOG3308|consen 3 KTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLDSRHNAP 82 (225)
T ss_pred eEEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccCchhhhhcccCCcchhcchhhhhHHHHHHHHHHHhcCccccc
Confidence 35799999999999999999999999999999999997665332 222 4443 3455566666666544332 111
Q ss_pred --------CccccccccCccCCceeecCCccEEEEecceecc-ccccCCCCeeEEecCCchHHH
Q 038045 137 --------VPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALS-EKLRPLLDLRVSVTGGVHFDL 191 (621)
Q Consensus 137 --------~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLl-DEp~s~LDlkV~Vd~~~d~~L 191 (621)
...+++...+. ........+++++|..+.. ++.-..+|..+.+..+.+...
T Consensus 83 ~ar~~~v~~~~~~~~~~~~----q~~~~~~~iviidGfmiy~y~p~~~~~d~~im~~~~y~~~k 142 (225)
T KOG3308|consen 83 EAREHLVSYANFEHYAQQF----QIKAYKNHIVIIDGFMIYNYKPQVDLFDRIIMLTLDYETCK 142 (225)
T ss_pred hHhhhhhhhhHHHHHhhhc----CcccccCcEEEEecceEEecchhhhhhhhheeeeccHHHHH
Confidence 11111111111 2234457899999977764 667779999999988765543
No 441
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.38 E-value=4.7e-07 Score=80.91 Aligned_cols=113 Identities=26% Similarity=0.411 Sum_probs=65.5
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCcccccccccccCCCCccccc-----chHHHHHHHHhcCCCccCcccc
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNYNDSSRVVDGNFDDPRLTDY-----DTLLENVRDLREGKPVQVPIYD 141 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~~~~~R~Ig~vfQdp~l~d~-----~tV~enL~~L~~gk~V~~p~yd 141 (621)
+|+|.|++||||||+++.|+..+ +.-.|++|++....... -++++. ... ..+.+.+..+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~-~~~~i~~d~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~l~~~~~---------- 66 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL-GFPVISMDDLIREPGWI--ERDDDE-REYIDADIDLLDDILEQLQN---------- 66 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH-TCEEEEEHHHHCCGTHC--HGCTTC-CHHHHHHHHHHHHHHHHHHE----------
T ss_pred CEEEECCCCCCHHHHHHHHHHHH-CCeEEEecceEEecccc--ccCcch-hhHHHHHHHHHHHHHHhhhc----------
Confidence 68999999999999999999987 56678888732111001 111111 111 111111111100
Q ss_pred ccccCccCCceeecCCccEEEEecceecc-ccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCc
Q 038045 142 FESSSRTGYRTVEVPSSRIVIIEGIYALS-EKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEP 206 (621)
Q Consensus 142 ~~~~~rsggq~qrVa~ArVLIvEG~lLLl-DEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti 206 (621)
......+|++|.+... +-.....|..++++.+.+....+++.|..+++|.+.
T Consensus 67 -------------~~~~~~~ii~g~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~R~~~~~~r~~ 119 (121)
T PF13207_consen 67 -------------KPDNDNWIIDGSYESEMEIRLPEFDHVIYLDAPDEECRERRLKRRLRRRGRDR 119 (121)
T ss_dssp -------------TTT--EEEEECCSCHCCHSCCHHGGCEEEEEEEEHHHHHHHHHHHHHHEESSC
T ss_pred -------------cCCCCeEEEeCCCccchhhhhhcCCEEEEEECCCHHHHHHHHHHHhHHcCCCC
Confidence 2345678888855411 112234467788888887678888888888877654
No 442
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.31 E-value=4.6e-07 Score=94.37 Aligned_cols=109 Identities=11% Similarity=0.105 Sum_probs=67.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc----cc----cccccCCCCcccccchHHHHHHHHhcCCCcc
Q 038045 66 ILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS----SR----VVDGNFDDPRLTDYDTLLENVRDLREGKPVQ 136 (621)
Q Consensus 66 iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~----~R----~Ig~vfQdp~l~d~~tV~enL~~L~~gk~V~ 136 (621)
.-++|.||+|||||||++.|++++ |+.|.|.++|.... .+ .+++++|+ ..+...++.++....
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~-~~~~r~~v~~~~~k~------- 183 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQH-DVGIRTDVLDGCPKA------- 183 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccc-cccccccccccchHH-------
Confidence 368999999999999999999999 89999999986421 11 23344443 233333333321110
Q ss_pred CccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHH
Q 038045 137 VPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQI 213 (621)
Q Consensus 137 ~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~ 213 (621)
.+. ..-+...+|.+++.||+.. .+.+..+.+.+ ..|.+++.++|+.
T Consensus 184 ------------~~~-----~~~i~~~~P~villDE~~~-------------~e~~~~l~~~~-~~G~~vI~ttH~~ 229 (270)
T TIGR02858 184 ------------EGM-----MMLIRSMSPDVIVVDEIGR-------------EEDVEALLEAL-HAGVSIIATAHGR 229 (270)
T ss_pred ------------HHH-----HHHHHhCCCCEEEEeCCCc-------------HHHHHHHHHHH-hCCCEEEEEechh
Confidence 000 0112225788999999742 12344444444 3699999999963
No 443
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.29 E-value=4.4e-07 Score=100.75 Aligned_cols=48 Identities=21% Similarity=0.124 Sum_probs=42.1
Q ss_pred EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCee-EEEECCcc
Q 038045 49 FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIA-VISMDNYN 101 (621)
Q Consensus 49 ~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sG-vI~lDg~~ 101 (621)
..+|++|++.+++|+ +++|+||||||||||++ .++. |..| .|.+||..
T Consensus 19 ~~vL~~Vsl~i~~GE---iv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~ 68 (504)
T TIGR03238 19 ERILVKFNKELPSSS---LLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATH 68 (504)
T ss_pred HHHHhCCceeecCCC---EEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEE
Confidence 357899999999999 99999999999999999 5666 7777 79999973
No 444
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.28 E-value=6.6e-07 Score=89.70 Aligned_cols=122 Identities=9% Similarity=0.106 Sum_probs=67.2
Q ss_pred EEEEECCCCCcHHHHHHHHHh--hCCCeeEEEECCcccccccccccCCCCc-ccccchHHHHHHHHhcCCCccCcccccc
Q 038045 67 LIGLAGPSGAGKTIFTEKILN--FMPSIAVISMDNYNDSSRVVDGNFDDPR-LTDYDTLLENVRDLREGKPVQVPIYDFE 143 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~Lag--LlP~sGvI~lDg~~~~~R~Ig~vfQdp~-l~d~~tV~enL~~L~~gk~V~~p~yd~~ 143 (621)
++.|+||||+|||||++.++. .++..|....-.. -.+++..|... +-+..++.+++.. |
T Consensus 31 ~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~----~~~~~~d~i~~~l~~~~si~~~~S~-----------f--- 92 (213)
T cd03281 31 IMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADS----ATIGLVDKIFTRMSSRESVSSGQSA-----------F--- 92 (213)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCC----cEEeeeeeeeeeeCCccChhhccch-----------H---
Confidence 889999999999999999984 2333333322211 12222222211 1111122221110 0
Q ss_pred ccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcC---CCceehHhHHHHHh
Q 038045 144 SSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVG---QEPEEIIQQISETS 217 (621)
Q Consensus 144 ~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG---~Ti~~VtHd~eea~ 217 (621)
..+.+++..+..++.++.+++.|||...+|+. ....+...+.+.+.+.| .+++.++|+.+...
T Consensus 93 -----~~el~~l~~~l~~~~~~slvllDE~~~gtd~~------~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~ 158 (213)
T cd03281 93 -----MIDLYQVSKALRLATRRSLVLIDEFGKGTDTE------DGAGLLIATIEHLLKRGPECPRVIVSTHFHELFN 158 (213)
T ss_pred -----HHHHHHHHHHHHhCCCCcEEEeccccCCCCHH------HHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHH
Confidence 00123344444555678899999999999963 11234444555554442 47889999987764
No 445
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=98.24 E-value=6.3e-07 Score=86.97 Aligned_cols=141 Identities=20% Similarity=0.271 Sum_probs=78.9
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCcccc-----c---c----cccc-cCCCCcccccchHHHHHHH----H
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNYNDS-----S---R----VVDG-NFDDPRLTDYDTLLENVRD----L 129 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~~~~-----~---R----~Ig~-vfQdp~l~d~~tV~enL~~----L 129 (621)
+|||+|+.||||||+++.+.. + +..+|..|..... . . ..|- ++.....++...+.+.+.. +
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~-g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~ 78 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-L-GIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKR 78 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-C-CCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHH
Confidence 489999999999999999998 4 5667888865211 0 0 0111 1111122333333332221 1
Q ss_pred hcCCCccCccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceeh
Q 038045 130 REGKPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEI 209 (621)
Q Consensus 130 ~~gk~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~V 209 (621)
..-..+-.|.+......... ......++++|..+++.......+|..|+++++.+.+..| ...+.|.+...+
T Consensus 79 ~~l~~i~hp~i~~~~~~~~~----~~~~~~~vive~plL~e~~~~~~~D~vv~V~a~~~~ri~R----l~~Rd~~s~~~~ 150 (179)
T cd02022 79 KKLEAITHPLIRKEIEEQLA----EARKEKVVVLDIPLLFETGLEKLVDRVIVVDAPPEIQIER----LMKRDGLSEEEA 150 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HccCCCEEEEEehHhhcCCcHHhCCeEEEEECCHHHHHHH----HHHcCCCCHHHH
Confidence 11111222322221111110 0111368999998888777778999999999997765444 344457777777
Q ss_pred HhHHHHHh
Q 038045 210 IQQISETS 217 (621)
Q Consensus 210 tHd~eea~ 217 (621)
...+..+.
T Consensus 151 ~~r~~~Q~ 158 (179)
T cd02022 151 EARIASQM 158 (179)
T ss_pred HHHHHhcC
Confidence 76665543
No 446
>COG4240 Predicted kinase [General function prediction only]
Probab=98.23 E-value=3.6e-06 Score=85.59 Aligned_cols=108 Identities=23% Similarity=0.404 Sum_probs=70.8
Q ss_pred CCCcceEEEEECCCCCcHHHHHHHHHhhC-C----CeeEEEECCccccc-------ccccccCC---CCcccccchHHHH
Q 038045 61 KNDGIILIGLAGPSGAGKTIFTEKILNFM-P----SIAVISMDNYNDSS-------RVVDGNFD---DPRLTDYDTLLEN 125 (621)
Q Consensus 61 ~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P----~sGvI~lDg~~~~~-------R~Ig~vfQ---dp~l~d~~tV~en 125 (621)
+-++|+|+||.||.||||||++-.|..++ . ..+..++|+++... +++.-.-| -|...|.....+.
T Consensus 46 e~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnV 125 (300)
T COG4240 46 ERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNV 125 (300)
T ss_pred hcCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHH
Confidence 34569999999999999999999988776 1 56788999986432 11110011 2345565555555
Q ss_pred HHHHhcC-CCccCccccccc----cCccC-CceeecCCccEEEEecceec
Q 038045 126 VRDLREG-KPVQVPIYDFES----SSRTG-YRTVEVPSSRIVIIEGIYAL 169 (621)
Q Consensus 126 L~~L~~g-k~V~~p~yd~~~----~~rsg-gq~qrVa~ArVLIvEG~lLL 169 (621)
+..+.++ ..|.+|.||++. +++.. ++.. ....+++|+||+++-
T Consensus 126 Lnai~~g~~~V~lPrfDKS~f~gagDR~p~~q~i-k~~vdivIlEGWfvG 174 (300)
T COG4240 126 LNAIARGGPTVPLPRFDKSAFAGAGDRAPQTQWI-KFEVDIVILEGWFVG 174 (300)
T ss_pred HHHHhcCCCCcccccccchhccCCCCCCCcccce-ecceeEEEEeeeeee
Confidence 6666554 567999999853 34422 2222 223899999998764
No 447
>PRK08118 topology modulation protein; Reviewed
Probab=98.23 E-value=1.5e-06 Score=83.94 Aligned_cols=106 Identities=18% Similarity=0.168 Sum_probs=68.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCcccccccccccCCCCcccccchHHHHHHHHhcCCCccCccccccccC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNYNDSSRVVDGNFDDPRLTDYDTLLENVRDLREGKPVQVPIYDFESSS 146 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~~~~~R~Ig~vfQdp~l~d~~tV~enL~~L~~gk~V~~p~yd~~~~~ 146 (621)
-|.|+||+|||||||++.|+..+ +...+++|...... ++. . .+...+.+.+..+.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l-~~~~~~lD~l~~~~---~w~--~---~~~~~~~~~~~~~~---------------- 57 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKL-NIPVHHLDALFWKP---NWE--G---VPKEEQITVQNELV---------------- 57 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCCceecchhhccc---CCc--C---CCHHHHHHHHHHHh----------------
Confidence 58999999999999999999987 45567777543211 111 0 01111111111110
Q ss_pred ccCCceeecCCccEEEEeccee-ccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCce
Q 038045 147 RTGYRTVEVPSSRIVIIEGIYA-LSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPE 207 (621)
Q Consensus 147 rsggq~qrVa~ArVLIvEG~lL-LlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~ 207 (621)
...-.|+||.|. ..+...+..|..++++.+.+.++.+.+.|.+...|.+..
T Consensus 58 ----------~~~~wVidG~~~~~~~~~l~~~d~vi~Ld~p~~~~~~R~~~R~~~~~g~~~~ 109 (167)
T PRK08118 58 ----------KEDEWIIDGNYGGTMDIRLNAADTIIFLDIPRTICLYRAFKRRVQYRGKTRP 109 (167)
T ss_pred ----------cCCCEEEeCCcchHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHHHcCCCCC
Confidence 112478888776 345555779999999999999888888888876776553
No 448
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.21 E-value=6.5e-07 Score=105.23 Aligned_cols=143 Identities=12% Similarity=0.048 Sum_probs=84.9
Q ss_pred eeeeeCcEEEEee-----cceEEeCC-CcceEEEEECCCCCcHHHHHHHHHhh-C-CCee-EEEECCcccccccccccCC
Q 038045 42 LSFEKGFFVVIRA-----CQLLAQKN-DGIILIGLAGPSGAGKTIFTEKILNF-M-PSIA-VISMDNYNDSSRVVDGNFD 112 (621)
Q Consensus 42 lsf~~G~~~~Lk~-----IsL~I~~G-e~~iIVGI~GpSGSGKSTLlr~LagL-l-P~sG-vI~lDg~~~~~R~Ig~vfQ 112 (621)
+.+..+.++++++ +++.+..+ . +++|+||||+|||||++.|++. + +.+| .|..... ..+++..+
T Consensus 296 i~l~~~rhPll~~~~~vp~di~l~~~~~---~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~----~~~~~~d~ 368 (771)
T TIGR01069 296 IILENARHPLLKEPKVVPFTLNLKFEKR---VLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEH----SEIPYFEE 368 (771)
T ss_pred EEEccccCceecCCceEeceeEeCCCce---EEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCcc----ccccchhh
Confidence 5666667777765 68888766 5 8999999999999999999998 3 4444 2222210 11222222
Q ss_pred CCccc-ccchHHHHHHHHhcCCCccCccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchHHH
Q 038045 113 DPRLT-DYDTLLENVRDLREGKPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDL 191 (621)
Q Consensus 113 dp~l~-d~~tV~enL~~L~~gk~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~L 191 (621)
.+..+ +..++.+++.. .+++..+.....+.+ .++.+++.|||...+|+. ....+
T Consensus 369 i~~~i~~~~si~~~LSt------------------fS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~------eg~al 423 (771)
T TIGR01069 369 IFADIGDEQSIEQNLST------------------FSGHMKNISAILSKT-TENSLVLFDELGAGTDPD------EGSAL 423 (771)
T ss_pred eeeecChHhHHhhhhhH------------------HHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHH------HHHHH
Confidence 22111 11222222222 122222222221211 367889999999999973 12234
Q ss_pred HHHHHHHHHHcCCCceehHhHHHHH
Q 038045 192 VKRVLRDIQRVGQEPEEIIQQISET 216 (621)
Q Consensus 192 irRI~Rdl~erG~Ti~~VtHd~eea 216 (621)
...+.+.+.+.|.+++.+||..+..
T Consensus 424 a~aiLe~l~~~g~~viitTH~~eL~ 448 (771)
T TIGR01069 424 AISILEYLLKQNAQVLITTHYKELK 448 (771)
T ss_pred HHHHHHHHHhcCCEEEEECChHHHH
Confidence 4567777777899999999997654
No 449
>PRK07261 topology modulation protein; Provisional
Probab=98.21 E-value=3.9e-06 Score=81.20 Aligned_cols=109 Identities=20% Similarity=0.309 Sum_probs=71.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCcccccccccccCCCCcccccchHHHHHHHHhcCCCccCccccccccC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNYNDSSRVVDGNFDDPRLTDYDTLLENVRDLREGKPVQVPIYDFESSS 146 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~~~~~R~Ig~vfQdp~l~d~~tV~enL~~L~~gk~V~~p~yd~~~~~ 146 (621)
.|+|+|++|||||||++.|+..+ +...+++|...... .++.. +...+.+.+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~-~~~~i~~D~~~~~~-----~~~~~---~~~~~~~~~~~~----------------- 55 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY-NCPVLHLDTLHFQP-----NWQER---DDDDMIADISNF----------------- 55 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh-CCCeEecCCEEecc-----ccccC---CHHHHHHHHHHH-----------------
Confidence 48999999999999999999876 34467777653211 11111 111111111111
Q ss_pred ccCCceeecCCccEEEEecceec-c-ccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehH
Q 038045 147 RTGYRTVEVPSSRIVIIEGIYAL-S-EKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEII 210 (621)
Q Consensus 147 rsggq~qrVa~ArVLIvEG~lLL-l-DEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~Vt 210 (621)
+...+ .|+||.|.- . ++.....|..++++.+...++.+.+.|.+..+|.+...+.
T Consensus 56 --------~~~~~-wIidg~~~~~~~~~~l~~ad~vI~Ld~p~~~~~~R~lkR~~~~rg~~r~~l~ 112 (171)
T PRK07261 56 --------LLKHD-WIIDGNYSWCLYEERMQEADQIIFLNFSRFNCLYRAFKRYLKYRGKTRESMA 112 (171)
T ss_pred --------HhCCC-EEEcCcchhhhHHHHHHHCCEEEEEcCCHHHHHHHHHHHHHHHcCCcCcccc
Confidence 11123 788998764 2 5556688999999999999999999998887787665443
No 450
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=98.16 E-value=1.6e-06 Score=85.45 Aligned_cols=141 Identities=22% Similarity=0.243 Sum_probs=76.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCcccc----c--------ccccc-cCCCCcccccchHHHHHHH---
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNYNDS----S--------RVVDG-NFDDPRLTDYDTLLENVRD--- 128 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~~~~----~--------R~Ig~-vfQdp~l~d~~tV~enL~~--- 128 (621)
|.+|||+|+.||||||+++.|.. + +..+|..|..... . ...|- ++.....++...+.+.+..
T Consensus 2 ~~~i~ltG~~gsGKst~~~~l~~-~-g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~ 79 (194)
T PRK00081 2 MLIIGLTGGIGSGKSTVANLFAE-L-GAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPE 79 (194)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-c-CCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHH
Confidence 46899999999999999999988 4 5567777754110 0 00111 1111122333333322221
Q ss_pred -HhcCCCccCccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCce
Q 038045 129 -LREGKPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPE 207 (621)
Q Consensus 129 -L~~gk~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~ 207 (621)
+..-..+-.|.......... .......++++|..+++.......+|..|+++++.+.+ +.|...+.|.+..
T Consensus 80 ~~~~L~~i~hP~v~~~~~~~~----~~~~~~~~vv~e~pll~e~~~~~~~D~vi~V~a~~e~~----~~Rl~~R~~~s~e 151 (194)
T PRK00081 80 ARKKLEAILHPLIREEILEQL----QEAESSPYVVLDIPLLFENGLEKLVDRVLVVDAPPETQ----LERLMARDGLSEE 151 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHcccCCEEEEEehHhhcCCchhhCCeEEEEECCHHHH----HHHHHHcCCCCHH
Confidence 00000111111111110000 00111268999999888888888899999999997764 3333344577776
Q ss_pred ehHhHHHH
Q 038045 208 EIIQQISE 215 (621)
Q Consensus 208 ~VtHd~ee 215 (621)
.+...+..
T Consensus 152 ~~~~ri~~ 159 (194)
T PRK00081 152 EAEAIIAS 159 (194)
T ss_pred HHHHHHHH
Confidence 55555543
No 451
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=98.15 E-value=2.2e-06 Score=85.23 Aligned_cols=145 Identities=17% Similarity=0.246 Sum_probs=80.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc-----ccc-------cccccccCCCC-cccccchHHHHHHH---
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNY-----NDS-------SRVVDGNFDDP-RLTDYDTLLENVRD--- 128 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~-----~~~-------~R~Ig~vfQdp-~l~d~~tV~enL~~--- 128 (621)
|++|||+|++||||||+++.|+. . +.-+|..|.. ... ...+|..+.++ ...+...+.+.+..
T Consensus 1 m~~igitG~igsGKst~~~~l~~-~-g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~ 78 (200)
T PRK14734 1 MLRIGLTGGIGSGKSTVADLLSS-E-GFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPE 78 (200)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-C-CCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHH
Confidence 35899999999999999999987 3 3445555532 110 11233333332 23343333333221
Q ss_pred -HhcCCCccCccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCce
Q 038045 129 -LREGKPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPE 207 (621)
Q Consensus 129 -L~~gk~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~ 207 (621)
+..-..+-.|.......... ....-....++++|..+++.......+|..|+++++.+.+ +.|...++|.+.+
T Consensus 79 ~~~~le~i~hP~v~~~~~~~~--~~~~~~~~~~vv~e~plL~e~g~~~~~D~vi~V~a~~e~r----i~Rl~~R~g~s~e 152 (200)
T PRK14734 79 QTALLNAITHPRIAEETARRF--NEARAQGAKVAVYDMPLLVEKGLDRKMDLVVVVDVDVEER----VRRLVEKRGLDED 152 (200)
T ss_pred HHHHHHHhhCHHHHHHHHHHH--HHHHhcCCCEEEEEeeceeEcCccccCCeEEEEECCHHHH----HHHHHHcCCCCHH
Confidence 11001111121111100000 0000112367888888887777777899999999997764 3444455688888
Q ss_pred ehHhHHHHHh
Q 038045 208 EIIQQISETS 217 (621)
Q Consensus 208 ~VtHd~eea~ 217 (621)
.+.+.+....
T Consensus 153 ~~~~ri~~Q~ 162 (200)
T PRK14734 153 DARRRIAAQI 162 (200)
T ss_pred HHHHHHHhcC
Confidence 8887776654
No 452
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.11 E-value=4.1e-06 Score=81.80 Aligned_cols=73 Identities=19% Similarity=0.243 Sum_probs=51.3
Q ss_pred cceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc----cccccccCCCC--cccccchHHHHHH
Q 038045 55 CQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS----SRVVDGNFDDP--RLTDYDTLLENVR 127 (621)
Q Consensus 55 IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~----~R~Ig~vfQdp--~l~d~~tV~enL~ 127 (621)
+.+.++.|+ .++|+||+|||||||+++|.+++ |+.+.|.+++.... ...+++.++.. ..++..++.+.+.
T Consensus 18 l~~~v~~g~---~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 94 (186)
T cd01130 18 LWLAVEARK---NILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLR 94 (186)
T ss_pred HHHHHhCCC---EEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHH
Confidence 344577888 99999999999999999999999 78899999875321 12344444332 2345566777766
Q ss_pred HHh
Q 038045 128 DLR 130 (621)
Q Consensus 128 ~L~ 130 (621)
...
T Consensus 95 ~~l 97 (186)
T cd01130 95 SAL 97 (186)
T ss_pred HHh
Confidence 543
No 453
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=98.06 E-value=3.2e-06 Score=85.23 Aligned_cols=56 Identities=18% Similarity=0.214 Sum_probs=35.9
Q ss_pred cEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcC--CCceehHhHHHHH
Q 038045 159 RIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVG--QEPEEIIQQISET 216 (621)
Q Consensus 159 rVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG--~Ti~~VtHd~eea 216 (621)
.-+|++|.. .....++.-|+++|++++.+.+..|+..+.. ..| .+.+.+...+...
T Consensus 121 ~~~Vi~Gr~-~~~~v~~~a~~~ifl~a~~~~Ra~Rr~~~~~-~~g~~~~~e~~~~~i~~R 178 (217)
T TIGR00017 121 DGIIADGRD-IGTVVFPNAEVKIFLDASVEERAKRRYKQLQ-IKGNEVNFEELLAEIKER 178 (217)
T ss_pred CCEEEEEcC-cceEEeCCCCEEEEEECCHHHHHHHHHHHHh-ccCCCCCHHHHHHHHHHH
Confidence 358888863 2234566689999999998887777766653 233 3445555555443
No 454
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=98.06 E-value=1.7e-06 Score=85.63 Aligned_cols=141 Identities=19% Similarity=0.149 Sum_probs=75.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccc----cc----c----ccc-ccCCCCc-ccccchHHHHHHH---
Q 038045 66 ILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNYND----SS----R----VVD-GNFDDPR-LTDYDTLLENVRD--- 128 (621)
Q Consensus 66 iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~~~----~~----R----~Ig-~vfQdp~-l~d~~tV~enL~~--- 128 (621)
.+|||+|+.||||||+++.+...+ +..+|..|.... .. . ..| -+++... ..+...+.+.+..
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~-g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~ 80 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQK-GIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPE 80 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh-CCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHH
Confidence 479999999999999999999875 455677765410 00 0 011 0111112 2232222222211
Q ss_pred -HhcCCCccCccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCce
Q 038045 129 -LREGKPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPE 207 (621)
Q Consensus 129 -L~~gk~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~ 207 (621)
...-..+-.|.......... .......++++|..+++.......+|..|+|+++.+.+..|.+. +.|.+..
T Consensus 81 ~~~~l~~i~hP~i~~~~~~~~----~~~~~~~~vv~e~pll~E~~~~~~~D~ii~V~a~~e~r~~Rl~~----R~g~s~e 152 (195)
T PRK14730 81 ERRWLENLIHPYVRERFEEEL----AQLKSNPIVVLVIPLLFEAKLTDLCSEIWVVDCSPEQQLQRLIK----RDGLTEE 152 (195)
T ss_pred HHHHHHHHHhHHHHHHHHHHH----HhcCCCCEEEEEeHHhcCcchHhCCCEEEEEECCHHHHHHHHHH----cCCCCHH
Confidence 00000011111000000000 00112358889998888777778999999999998775544443 3477776
Q ss_pred ehHhHHHH
Q 038045 208 EIIQQISE 215 (621)
Q Consensus 208 ~VtHd~ee 215 (621)
.+.+.+..
T Consensus 153 ~~~~ri~~ 160 (195)
T PRK14730 153 EAEARINA 160 (195)
T ss_pred HHHHHHHh
Confidence 66655543
No 455
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=98.04 E-value=4.3e-06 Score=83.37 Aligned_cols=54 Identities=26% Similarity=0.286 Sum_probs=36.7
Q ss_pred ccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHH
Q 038045 158 SRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISE 215 (621)
Q Consensus 158 ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~ee 215 (621)
..++++|+.+++-..+...+|..++++++.+.+..|. ..+.+.+.+.+..++..
T Consensus 115 ~~vvv~e~pLL~e~~~~~~~d~ii~V~a~~e~~~~Rl----~~R~~~s~e~~~~Ri~~ 168 (208)
T PRK14731 115 KRILVKEAAILFESGGDAGLDFIVVVAADTELRLERA----VQRGMGSREEIRRRIAA 168 (208)
T ss_pred CCEEEEEeeeeeecCchhcCCeEEEEECCHHHHHHHH----HHcCCCCHHHHHHHHHH
Confidence 3688899987777777778999999999877644333 33335555555555443
No 456
>PRK06217 hypothetical protein; Validated
Probab=98.03 E-value=1.1e-05 Score=78.43 Aligned_cols=105 Identities=26% Similarity=0.304 Sum_probs=63.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCcccccccccccCCCCcccccchHHHHHHHHhcCCCccCcccccccc
Q 038045 66 ILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNYNDSSRVVDGNFDDPRLTDYDTLLENVRDLREGKPVQVPIYDFESS 145 (621)
Q Consensus 66 iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~~~~~R~Ig~vfQdp~l~d~~tV~enL~~L~~gk~V~~p~yd~~~~ 145 (621)
..|.|+|++||||||+++.|+..+ +...|++|.+........ +.... ...+.+..+..
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l-~~~~~~~D~~~~~~~~~~--~~~~~-----~~~~~~~~~~~-------------- 59 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERL-DIPHLDTDDYFWLPTDPP--FTTKR-----PPEERLRLLLE-------------- 59 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc-CCcEEEcCceeeccCCCC--ccccC-----CHHHHHHHHHH--------------
Confidence 359999999999999999999988 455788887643211100 00000 00111111000
Q ss_pred CccCCceeecCCccEEEEecceecc-ccccCCCCeeEEecCCchHHHHHHHHHHHH
Q 038045 146 SRTGYRTVEVPSSRIVIIEGIYALS-EKLRPLLDLRVSVTGGVHFDLVKRVLRDIQ 200 (621)
Q Consensus 146 ~rsggq~qrVa~ArVLIvEG~lLLl-DEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~ 200 (621)
.+....-.|++|.+... +......|..+|++.+.+..+.+...|...
T Consensus 60 --------~~~~~~~~vi~G~~~~~~~~~~~~~d~~i~Ld~~~~~~~~Rl~~R~~~ 107 (183)
T PRK06217 60 --------DLRPREGWVLSGSALGWGDPLEPLFDLVVFLTIPPELRLERLRLREFQ 107 (183)
T ss_pred --------HHhcCCCEEEEccHHHHHHHHHhhCCEEEEEECCHHHHHHHHHcCccc
Confidence 00011246777877644 456678999999999988877666666543
No 457
>COG1437 CyaB Adenylate cyclase, class 2 (thermophilic) [Nucleotide transport and metabolism]
Probab=98.03 E-value=2.7e-05 Score=76.41 Aligned_cols=128 Identities=26% Similarity=0.360 Sum_probs=97.3
Q ss_pred eeEEecCCCCCcccccceeEEe-ecCCeeEEEeeeeecCCCeEeccceeeEEEeeeecc----eeccCceEEEEEeecce
Q 038045 242 YDIYLLPPGEDPESCQSYLRMR-NKDGKYSLMFEEWVTDIPFVISPRITFEVSVRLLGG----LMALGYTIATILKRSSH 316 (621)
Q Consensus 242 aDIYi~P~~~~~e~~~d~Irvr-~~~g~~~L~f~e~i~d~~fIi~P~~~FeV~~~~LgG----ll~lgy~i~~~~~~~~~ 316 (621)
.|+|..-|..+.......+|+| -.+|.+.+.+-++..+++.-+ +.++++.+.-.+. +-.|||..++.++-+..
T Consensus 34 ~DiYf~~p~rdf~~tdealRiR~~~~~~~~lTYKgp~ld~~~k~--r~E~E~~v~D~~~~~~il~~LGF~~~~~VkK~R~ 111 (178)
T COG1437 34 EDIYFDHPCRDFADTDEALRIRRINGGEVFLTYKGPKLDRESKT--REEIEIEVSDVEKALEILKRLGFKEVAVVKKTRE 111 (178)
T ss_pred eeeeeecCCcchhcCcceeEEEEecCCcEEEEEecccccccccc--eeeEEEEeCCHHHHHHHHHHcCCceeeEEEEEEE
Confidence 5777666666666666778888 666888888876766665533 2355665543332 57899999999999999
Q ss_pred eeeCCCceEEehhhHhhcCce-eEEEecccH-------HHHHHHHHHhCCC-CCccchhHHHHHH
Q 038045 317 VFCDDRGVCVKIDWLEQLNRQ-YIQVQGKDR-------LIVKNVAEQLGLE-GSYVPRTYIEQIQ 372 (621)
Q Consensus 317 i~~d~~gv~i~v~~le~l~~~-~i~i~g~~r-------~~V~~~~~~L~l~-g~~i~~~y~e~i~ 372 (621)
+|..|+ +++++|.++.||.- .|-+.-.+- +++.+++.+||+. ...+++||||++.
T Consensus 112 iY~~~~-~~i~lD~VegLG~F~EIE~~~~d~~e~~~~~~~~~~i~~~lGl~~~~~~r~sYlELl~ 175 (178)
T COG1437 112 IYKVGN-VTIELDAVEGLGDFLEIEVMVDDENEIDGAKEEIEEIARQLGLKEEDLERRSYLELLL 175 (178)
T ss_pred EEeeCC-EEEEEecccCCcccEEEEEecCCchhhHHHHHHHHHHHHHhCCChhcccchhHHHHHh
Confidence 999999 99999999999965 444443333 4588999999997 9999999998873
No 458
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=98.01 E-value=3.3e-06 Score=83.83 Aligned_cols=140 Identities=20% Similarity=0.277 Sum_probs=74.4
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCcc----cc-c-------cccc-ccCCCCcccccchHHHHHHH----H
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNYN----DS-S-------RVVD-GNFDDPRLTDYDTLLENVRD----L 129 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~~----~~-~-------R~Ig-~vfQdp~l~d~~tV~enL~~----L 129 (621)
+|||+|++||||||+++.+.+. +.-+|..|... .. . ...| -+++.....+...+.+.+.. +
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~--g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~ 78 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEEL--GAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKL 78 (196)
T ss_pred CEEEECCCCccHHHHHHHHHHC--CCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHH
Confidence 4899999999999999999874 44556665431 00 0 0111 01111222333333332221 0
Q ss_pred hcCCCccCccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceeh
Q 038045 130 REGKPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEI 209 (621)
Q Consensus 130 ~~gk~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~V 209 (621)
..-..+-.|........... ......++++|..+++.......+|..|+|+++.+.+..| ...+.|.+.+.+
T Consensus 79 ~~L~~i~hP~v~~~~~~~~~----~~~~~~~vi~e~pLL~E~~~~~~~D~vi~V~a~~e~r~~R----L~~R~g~s~e~a 150 (196)
T PRK14732 79 KALNELIHPLVRKDFQKILQ----TTAEGKLVIWEVPLLFETDAYTLCDATVTVDSDPEESILR----TISRDGMKKEDV 150 (196)
T ss_pred HHHHHHhhHHHHHHHHHHHH----HHhcCCcEEEEeeeeeEcCchhhCCEEEEEECCHHHHHHH----HHHcCCCCHHHH
Confidence 00011111211111111100 0112357888988888777778899999999997765444 344457887777
Q ss_pred HhHHHHH
Q 038045 210 IQQISET 216 (621)
Q Consensus 210 tHd~eea 216 (621)
..++...
T Consensus 151 ~~ri~~Q 157 (196)
T PRK14732 151 LARIASQ 157 (196)
T ss_pred HHHHHHc
Confidence 6665443
No 459
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.00 E-value=4.5e-06 Score=86.49 Aligned_cols=62 Identities=8% Similarity=-0.013 Sum_probs=45.0
Q ss_pred CccCCceeecCCccEEEE----ecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHH
Q 038045 146 SRTGYRTVEVPSSRIVII----EGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISE 215 (621)
Q Consensus 146 ~rsggq~qrVa~ArVLIv----EG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~ee 215 (621)
.+++|+++++..++.++. .|.+++.|||+..+|+. ....+.++.+.+. .+.+++.++|+...
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~-------~~~~l~~~l~~~~-~~~tii~isH~~~~ 235 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGE-------VAQAVGKKLKELS-RSHQVLCITHLPQV 235 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHH-------HHHHHHHHHHHHh-CCCEEEEEechHHH
Confidence 368999999988875443 99999999999999973 2233333344433 37899999999763
No 460
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=97.97 E-value=4.8e-06 Score=83.51 Aligned_cols=142 Identities=13% Similarity=0.163 Sum_probs=77.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCcc----ccc-------ccccc-cCCCCcccccchHHHHHHH----
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNYN----DSS-------RVVDG-NFDDPRLTDYDTLLENVRD---- 128 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~~----~~~-------R~Ig~-vfQdp~l~d~~tV~enL~~---- 128 (621)
|++|||+|+.||||||+++++...+ +..++..|... ... ...|- +++ ...+|...+.+.+..
T Consensus 6 ~~~IglTG~iGsGKStv~~~l~~~l-g~~vidaD~i~~~l~~~~~~~~~i~~~fG~~i~~-~g~idR~~L~~~vF~d~~~ 83 (204)
T PRK14733 6 TYPIGITGGIASGKSTATRILKEKL-NLNVVCADTISREITKKPSVIKKIAEKFGDEIVM-NKQINRAMLRAIITESKEA 83 (204)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHc-CCeEEeccHHHHHHHCchHHHHHHHHHhCHHhcc-CCCcCHHHHHHHHhCCHHH
Confidence 5789999999999999999998765 34466666431 000 00110 111 122333333333221
Q ss_pred HhcCCCccCccccccccCccCCceeecCCccEEEEecceeccccc--cCCCCeeEEecCCchHHHHHHHHHHHHHcCCCc
Q 038045 129 LREGKPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKL--RPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEP 206 (621)
Q Consensus 129 L~~gk~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp--~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti 206 (621)
+..-..+-.|.......+... . ....++++|..+++.... ...+|..|+|+++.+. ++.|...+.|.+.
T Consensus 84 ~~~Le~i~HP~V~~~~~~~~~----~-~~~~~vv~eipLL~E~~~~~~~~~D~vi~V~a~~e~----ri~Rl~~Rd~~s~ 154 (204)
T PRK14733 84 KKWLEDYLHPVINKEIKKQVK----E-SDTVMTIVDIPLLGPYNFRHYDYLKKVIVIKADLET----RIRRLMERDGKNR 154 (204)
T ss_pred HHHHHhhhhHHHHHHHHHHHH----h-cCCCeEEEEechhhhccCchhhhCCEEEEEECCHHH----HHHHHHHcCCCCH
Confidence 000011112221111111100 0 123578888887765432 3578999999998765 4445555668888
Q ss_pred eehHhHHHHHh
Q 038045 207 EEIIQQISETS 217 (621)
Q Consensus 207 ~~VtHd~eea~ 217 (621)
+.+...+..++
T Consensus 155 ~~a~~ri~~Q~ 165 (204)
T PRK14733 155 QQAVAFINLQI 165 (204)
T ss_pred HHHHHHHHhCC
Confidence 88777766554
No 461
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=97.94 E-value=7.1e-06 Score=102.96 Aligned_cols=95 Identities=13% Similarity=0.049 Sum_probs=65.1
Q ss_pred ccccCccCCceeecCCccEEEEe---cceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHh-
Q 038045 142 FESSSRTGYRTVEVPSSRIVIIE---GIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETS- 217 (621)
Q Consensus 142 ~~~~~rsggq~qrVa~ArVLIvE---G~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~- 217 (621)
.....+|||+.||+..+.-+.-. +.+.++|||+..|++ .|.+.+-.+.+.+.+.|.|++.|.|+.+...
T Consensus 1695 q~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~-------~d~~~Ll~~l~~L~~~g~tvivieH~~~~i~~ 1767 (1809)
T PRK00635 1695 QNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDN-------QQKSALLVQLRTLVSLGHSVIYIDHDPALLKQ 1767 (1809)
T ss_pred CcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCH-------HHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHh
Confidence 44567899999999888877643 567788999999997 4555555566667789999999999976653
Q ss_pred -ccccccchhhhcCCCCceeeccCceeE
Q 038045 218 -AKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 218 -~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
++++.+.- -+-..-|.+..++++.++
T Consensus 1768 aD~iidlgp-~gG~~GG~iva~Gtp~~i 1794 (1809)
T PRK00635 1768 ADYLIEMGP-GSGKTGGKILFSGPPKDI 1794 (1809)
T ss_pred CCEEEEcCC-CcccCCCEEEEEeCHHHH
Confidence 32222100 011223467777777776
No 462
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.93 E-value=8.8e-06 Score=82.50 Aligned_cols=133 Identities=10% Similarity=0.008 Sum_probs=76.2
Q ss_pred EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC--CCeeEEEECCcc---cccccccccCCCCccc-ccchH
Q 038045 49 FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM--PSIAVISMDNYN---DSSRVVDGNFDDPRLT-DYDTL 122 (621)
Q Consensus 49 ~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl--P~sGvI~lDg~~---~~~R~Ig~vfQdp~l~-d~~tV 122 (621)
..+..++++.+.+|+ +++|+||||+||||+++.+++.. +..|........ ...+....+.....+. ..-++
T Consensus 18 ~~v~n~i~~~~~~g~---~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF 94 (222)
T cd03287 18 SFVPNDIHLSAEGGY---CQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTF 94 (222)
T ss_pred CEEEEeEEEEecCCc---EEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchH
Confidence 347889999999999 89999999999999999999943 666654443211 0000000000000000 00112
Q ss_pred HHHHHHHhcCCCccCccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHc
Q 038045 123 LENVRDLREGKPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRV 202 (621)
Q Consensus 123 ~enL~~L~~gk~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~er 202 (621)
...+..+..- +.. .-++.+++.|||....|... ...+...+.+.+.+.
T Consensus 95 ~~e~~~~~~i----------------------l~~----~~~~sLvllDE~~~gT~~~d------~~~i~~~il~~l~~~ 142 (222)
T cd03287 95 MVELSETSHI----------------------LSN----CTSRSLVILDELGRGTSTHD------GIAIAYATLHYLLEE 142 (222)
T ss_pred HHHHHHHHHH----------------------HHh----CCCCeEEEEccCCCCCChhh------HHHHHHHHHHHHHhc
Confidence 2222211100 000 01355788899988777521 123445666666665
Q ss_pred -CCCceehHhHHHHH
Q 038045 203 -GQEPEEIIQQISET 216 (621)
Q Consensus 203 -G~Ti~~VtHd~eea 216 (621)
+.+.+.++|+.+..
T Consensus 143 ~~~~~i~~TH~~~l~ 157 (222)
T cd03287 143 KKCLVLFVTHYPSLG 157 (222)
T ss_pred cCCeEEEEcccHHHH
Confidence 88999999998765
No 463
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.91 E-value=1.4e-05 Score=77.84 Aligned_cols=62 Identities=18% Similarity=0.181 Sum_probs=44.7
Q ss_pred CCCcceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCcc--cc----cccccccCCCCcccccchHHHHHHH
Q 038045 61 KNDGIILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNYN--DS----SRVVDGNFDDPRLTDYDTLLENVRD 128 (621)
Q Consensus 61 ~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~~--~~----~R~Ig~vfQdp~l~d~~tV~enL~~ 128 (621)
+|+ +++|+|+|||||||++++|++++. . +.+||.. .. ....++.+++...+++.+...++.+
T Consensus 2 ~ge---~i~l~G~sGsGKSTl~~~la~~l~-~--~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 69 (176)
T PRK09825 2 AGE---SYILMGVSGSGKSLIGSKIAALFS-A--KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASY 69 (176)
T ss_pred CCc---EEEEECCCCCCHHHHHHHHHHhcC-C--EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHH
Confidence 477 899999999999999999999882 1 4566542 11 1235677777666677777777665
No 464
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=97.91 E-value=1.5e-05 Score=78.46 Aligned_cols=142 Identities=23% Similarity=0.296 Sum_probs=75.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCcc----cc-c-------ccccc-cCCCCcccccchHHHHHHH----
Q 038045 66 ILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNYN----DS-S-------RVVDG-NFDDPRLTDYDTLLENVRD---- 128 (621)
Q Consensus 66 iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~~----~~-~-------R~Ig~-vfQdp~l~d~~tV~enL~~---- 128 (621)
.+|||+|+.||||||+++++.. + +.-+|..|... .. . ...|- ++......+...+.+.+..
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~-G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~ 78 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-L-GFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEK 78 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-T-T-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHH
T ss_pred CEEEEECCCcCCHHHHHHHHHH-C-CCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHH
Confidence 3799999999999999999998 4 66677777431 00 0 01111 1111122333222222211
Q ss_pred HhcCCCccCccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCcee
Q 038045 129 LREGKPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEE 208 (621)
Q Consensus 129 L~~gk~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~ 208 (621)
++.-..+-.|......... ........++++|..+++.......+|..|+|+++.+. ++.|..++.|.+...
T Consensus 79 ~~~L~~iihP~I~~~~~~~----~~~~~~~~~~v~e~pLL~E~~~~~~~D~vi~V~a~~e~----ri~Rl~~R~~~~~~~ 150 (180)
T PF01121_consen 79 LKKLENIIHPLIREEIEKF----IKRNKSEKVVVVEIPLLFESGLEKLCDEVIVVYAPEEI----RIKRLMERDGLSEEE 150 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHCHSTSEEEEE-TTTTTTTGGGGSSEEEEEE--HHH----HHHHHHHHHTSTHHH
T ss_pred HHHHHHHHhHHHHHHHHHH----HHhccCCCEEEEEcchhhhhhHhhhhceEEEEECCHHH----HHHHHHhhCCCcHHH
Confidence 0000001111111110000 11111227899999888877888899999999998665 444555556899888
Q ss_pred hHhHHHHHh
Q 038045 209 IIQQISETS 217 (621)
Q Consensus 209 VtHd~eea~ 217 (621)
+...+..+.
T Consensus 151 ~~~ri~~Q~ 159 (180)
T PF01121_consen 151 AEARIASQM 159 (180)
T ss_dssp HHHHHHTS-
T ss_pred HHHHHHhCC
Confidence 877765554
No 465
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.90 E-value=1.7e-05 Score=72.76 Aligned_cols=122 Identities=16% Similarity=0.255 Sum_probs=67.4
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCcccccccccccCCCCcccccchHHHHHHHHhcCCCccCccccccccC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNYNDSSRVVDGNFDDPRLTDYDTLLENVRDLREGKPVQVPIYDFESSS 146 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~~~~~R~Ig~vfQdp~l~d~~tV~enL~~L~~gk~V~~p~yd~~~~~ 146 (621)
+|.|.|++||||||+++.|+..+ +...+..|+...... ...... ......+.+.+.... .
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~-~~~~~~~~~i~~e~~-~~~~~~---~~~~~~i~~~l~~~~--------------~- 60 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL-GLPYLDTGGIRTEEV-GKLASE---VAAIPEVRKALDERQ--------------R- 60 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh-CCceeccccCCHHHH-HHHHHH---hcccHhHHHHHHHHH--------------H-
Confidence 57999999999999999999876 333455553211000 000000 000001111111100 0
Q ss_pred ccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHH-HcCCCceehHhHHHHH
Q 038045 147 RTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQ-RVGQEPEEIIQQISET 216 (621)
Q Consensus 147 rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~-erG~Ti~~VtHd~eea 216 (621)
.+.....+|+||.++-. .+.+..|+.++++++.+.+..+.+.|+.. +.|.+.+.+...+...
T Consensus 61 -------~~~~~~~~Vidg~~~~~-~~~~~~~~~i~l~~~~~~r~~R~~~r~~~~~~~~~~~~~~~~~~~~ 123 (147)
T cd02020 61 -------ELAKKPGIVLEGRDIGT-VVFPDADLKIFLTASPEVRAKRRAKQLQAKGEGVDLEEILAEIIER 123 (147)
T ss_pred -------HHhhCCCEEEEeeeeee-EEcCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 01112346778865422 22456899999999998877666666633 2367887777766555
No 466
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.89 E-value=2.1e-05 Score=65.15 Aligned_cols=23 Identities=30% Similarity=0.640 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLl 89 (621)
+++|.|++||||||+++.|+..+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999975
No 467
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=97.86 E-value=2.2e-05 Score=86.81 Aligned_cols=78 Identities=19% Similarity=0.190 Sum_probs=60.9
Q ss_pred EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcc----------------cccccccccC
Q 038045 49 FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYN----------------DSSRVVDGNF 111 (621)
Q Consensus 49 ~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~----------------~~~R~Ig~vf 111 (621)
..+++++ +.+.+|+ ++||.|+||||||||+++|+++. ++.+++-..|+. ..+..+++++
T Consensus 143 i~aID~l-l~I~~GQ---~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~ 218 (434)
T PRK07196 143 VNAINGL-LTIGKGQ---RVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAP 218 (434)
T ss_pred eeeccce-EeEecce---EEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEec
Confidence 4699999 9999999 89999999999999999999988 665544433331 0122577888
Q ss_pred CCCcccccchHHHHHHHHh
Q 038045 112 DDPRLTDYDTLLENVRDLR 130 (621)
Q Consensus 112 Qdp~l~d~~tV~enL~~L~ 130 (621)
++...+...++.+++..+.
T Consensus 219 ~d~s~~~rl~a~e~a~~iA 237 (434)
T PRK07196 219 ADESPLMRIKATELCHAIA 237 (434)
T ss_pred CCCChhhhHHHHHHHHHHH
Confidence 8888888888888876543
No 468
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.79 E-value=5.2e-06 Score=81.07 Aligned_cols=45 Identities=13% Similarity=0.018 Sum_probs=33.7
Q ss_pred ecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHH-cCCCceehHhHHH
Q 038045 164 EGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQR-VGQEPEEIIQQIS 214 (621)
Q Consensus 164 EG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~e-rG~Ti~~VtHd~e 214 (621)
++.+++.|||...+|+. ....+...+.+.+.+ .|.+++.++|..+
T Consensus 78 ~~~llllDEp~~g~d~~------~~~~~~~~~l~~l~~~~~~~iii~TH~~~ 123 (185)
T smart00534 78 ENSLVLLDELGRGTSTY------DGVAIAAAVLEYLLEKIGALTLFATHYHE 123 (185)
T ss_pred CCeEEEEecCCCCCCHH------HHHHHHHHHHHHHHhcCCCeEEEEecHHH
Confidence 68899999999999973 223445566666555 4889999999985
No 469
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=97.75 E-value=3e-05 Score=84.87 Aligned_cols=154 Identities=17% Similarity=0.087 Sum_probs=93.2
Q ss_pred EEEeecceEEeCCCc--ceEEEEECCCCCcHHHHHHHHHhhC-CCee-EEEECCcccccccccccCCCCcccccchHHHH
Q 038045 50 VVIRACQLLAQKNDG--IILIGLAGPSGAGKTIFTEKILNFM-PSIA-VISMDNYNDSSRVVDGNFDDPRLTDYDTLLEN 125 (621)
Q Consensus 50 ~~Lk~IsL~I~~Ge~--~iIVGI~GpSGSGKSTLlr~LagLl-P~sG-vI~lDg~~~~~R~Ig~vfQdp~l~d~~tV~en 125 (621)
..+-+..|.++.|+- ..++..+|.||.|||||+++++|.+ |+.| .|..-+. .|-+|...--..-+|++.
T Consensus 350 k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~lnV-------SykpqkispK~~~tvR~l 422 (592)
T KOG0063|consen 350 KTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNV-------SYKPQKISPKREGTVRQL 422 (592)
T ss_pred eeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccccce-------eccccccCccccchHHHH
Confidence 345555666777652 3478899999999999999999988 7543 3333222 222222111111122222
Q ss_pred HHHHhc------------CCCccC-ccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchHHHH
Q 038045 126 VRDLRE------------GKPVQV-PIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLV 192 (621)
Q Consensus 126 L~~L~~------------gk~V~~-p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~Li 192 (621)
+..-.. .++... ..+|.....++||+.|+++.+-.+=-.+.+-|.|||...+|- ......-
T Consensus 423 l~~kIr~ay~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDS------eQRi~As 496 (592)
T KOG0063|consen 423 LHTKIRDAYMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDS------EQRIIAS 496 (592)
T ss_pred HHHHhHhhhcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcCh------HHHHHHH
Confidence 211000 011111 135666778899999999887666666667777888888873 2223344
Q ss_pred HHHHHHHHHcCCCceehHhHHHHH
Q 038045 193 KRVLRDIQRVGQEPEEIIQQISET 216 (621)
Q Consensus 193 rRI~Rdl~erG~Ti~~VtHd~eea 216 (621)
+-++|.+...++|...|.|++.-+
T Consensus 497 kvikRfilhakktafvVEhdfIma 520 (592)
T KOG0063|consen 497 KVIKRFILHAKKTAFVVEHDFIMA 520 (592)
T ss_pred HHHHHHHHhccchhhhhhhHHHHH
Confidence 456677777789999999996544
No 470
>KOG2878 consensus Predicted kinase [General function prediction only]
Probab=97.70 E-value=6.7e-05 Score=75.27 Aligned_cols=107 Identities=26% Similarity=0.335 Sum_probs=69.9
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhhC-------CCeeEEEECCcccccc-cccc---cC-----C---CCcccccchHHH
Q 038045 64 GIILIGLAGPSGAGKTIFTEKILNFM-------PSIAVISMDNYNDSSR-VVDG---NF-----D---DPRLTDYDTLLE 124 (621)
Q Consensus 64 ~~iIVGI~GpSGSGKSTLlr~LagLl-------P~sGvI~lDg~~~~~R-~Ig~---vf-----Q---dp~l~d~~tV~e 124 (621)
-|+++|+.||.|||||||+-+|-..+ -+++.+++|+|+.... +... ++ | .+...|...+.+
T Consensus 30 ~Pl~igfSgPQGsGKstl~~ald~~lt~Ky~~E~s~~~~SvDDFYLThe~Q~eL~k~npnN~Llq~RGlaGtHD~kll~e 109 (282)
T KOG2878|consen 30 VPLVIGFSGPQGSGKSTLVFALDYKLTKKYIQEYSSATISVDDFYLTHEGQAELRKKNPNNALLQYRGLAGTHDLKLLVE 109 (282)
T ss_pred CcEEEEecCCCCCCceeehhhhHHHHHHHhccccceEEEEecceeeechhHHHHHhhCCCChhhccCCCCCcccHHHHHH
Confidence 48999999999999999987765433 1689999999964321 1111 11 1 123455555566
Q ss_pred HHHHHhc----CCCccCccccccc----cCcc-CCceeecCCccEEEEecceecc
Q 038045 125 NVRDLRE----GKPVQVPIYDFES----SSRT-GYRTVEVPSSRIVIIEGIYALS 170 (621)
Q Consensus 125 nL~~L~~----gk~V~~p~yd~~~----~~rs-ggq~qrVa~ArVLIvEG~lLLl 170 (621)
.+..+.+ +..+.+|.||.+. ++|. .++...+.+-.++|.||+.+-.
T Consensus 110 vLna~~k~~~d~~~v~vP~YdKS~f~G~GDR~d~sqw~k~~P~~~~ifEGWmlGF 164 (282)
T KOG2878|consen 110 VLNALSKLTKDGLKVKVPRYDKSAFSGRGDRADSSQWPKVEPLSVIIFEGWMLGF 164 (282)
T ss_pred HHHHHHcCCcccceEeccccchhhccCCCCCCccccCcccCceeEEEEecccccc
Confidence 6665543 3458899999763 2332 2355567678999999987643
No 471
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=97.69 E-value=6.5e-05 Score=87.93 Aligned_cols=53 Identities=15% Similarity=0.302 Sum_probs=38.2
Q ss_pred EEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHH
Q 038045 160 IVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISET 216 (621)
Q Consensus 160 VLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea 216 (621)
-+|+||.- +.--+++..|+|+|++++.+.+..||..++.. .+...+..++...
T Consensus 139 ~~v~eGRd-igtvv~p~a~~K~~l~A~~~~Ra~Rr~~~~~~---~~~~~~~~~~~~R 191 (712)
T PRK09518 139 GIVAEGRD-ITTVVAPDAEVRILLTAREEVRQARRSGQDRS---ETPGVVLEDVAAR 191 (712)
T ss_pred cEEEecCc-cceEEecCCCeEEEEECCHHHHHHHHHHhhhc---CCHHHHHHHHHHH
Confidence 58899953 33456678899999999999999998877642 5555565555433
No 472
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=97.67 E-value=3.9e-05 Score=79.04 Aligned_cols=54 Identities=22% Similarity=0.236 Sum_probs=38.4
Q ss_pred cEEEEecceeccccc-cCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHH
Q 038045 159 RIVIIEGIYALSEKL-RPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISET 216 (621)
Q Consensus 159 rVLIvEG~lLLlDEp-~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea 216 (621)
.++++|..+++.... ...+|..|+|+++.+.+. .|...+.|.+.+.+..++..+
T Consensus 118 ~~vv~evPLL~E~~~~~~~~D~iv~V~a~~e~ri----~RL~~R~g~s~eea~~Ri~~Q 172 (244)
T PTZ00451 118 LIVVLDAPTLFETKTFTYFVSASVVVSCSEERQI----ERLRKRNGFSKEEALQRIGSQ 172 (244)
T ss_pred CEEEEEechhhccCchhhcCCeEEEEECCHHHHH----HHHHHcCCCCHHHHHHHHHhC
Confidence 589999988887654 347899999999876643 333444577887777766544
No 473
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.64 E-value=0.00014 Score=69.76 Aligned_cols=24 Identities=38% Similarity=0.534 Sum_probs=22.5
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFMP 90 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLlP 90 (621)
+++|+||||||||||++.|++.++
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 799999999999999999999873
No 474
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.62 E-value=2.3e-05 Score=76.18 Aligned_cols=124 Identities=22% Similarity=0.328 Sum_probs=73.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECC-cccccccccccCCCCcccccchHHHHHHHHhcCCCccCcccccccc
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFMPSIAVISMDN-YNDSSRVVDGNFDDPRLTDYDTLLENVRDLREGKPVQVPIYDFESS 145 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg-~~~~~R~Ig~vfQdp~l~d~~tV~enL~~L~~gk~V~~p~yd~~~~ 145 (621)
+|.|.||+||||||+++.|+..+ +--.|+-.. |+...+..|+.+.++ -... -..|.+|...+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~-gl~~vsaG~iFR~~A~e~gmsl~ef-----------~~~A-----E~~p~iD~~iD 64 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL-GLKLVSAGTIFREMARERGMSLEEF-----------SRYA-----EEDPEIDKEID 64 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh-CCceeeccHHHHHHHHHcCCCHHHH-----------HHHH-----hcCchhhHHHH
Confidence 68999999999999999999987 222333222 222333444433221 1111 12233444333
Q ss_pred CccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHH
Q 038045 146 SRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISET 216 (621)
Q Consensus 146 ~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea 216 (621)
.+ +..++...=+|+||.++.. -....-|+++|+.++... |..|...+.|.++..+...+.+.
T Consensus 65 ~r----q~e~a~~~nvVlegrLA~W-i~k~~adlkI~L~Apl~v----Ra~Ria~REgi~~~~a~~~~~~R 126 (179)
T COG1102 65 RR----QKELAKEGNVVLEGRLAGW-IVREYADLKIWLKAPLEV----RAERIAKREGIDVDEALAETVER 126 (179)
T ss_pred HH----HHHHHHcCCeEEhhhhHHH-HhccccceEEEEeCcHHH----HHHHHHHhcCCCHHHHHHHHHHH
Confidence 22 1223335678888876642 112678999999998665 44555556699988887776554
No 475
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.61 E-value=9.5e-05 Score=70.81 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=21.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHhhC
Q 038045 66 ILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 66 iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
.+|+|.||+||||||+++.|+..+
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 389999999999999999999654
No 476
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=97.58 E-value=3.1e-05 Score=75.51 Aligned_cols=142 Identities=20% Similarity=0.231 Sum_probs=73.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccc----c-c-------ccccc-cCCCCcccccchHHHHHHH----H
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNYND----S-S-------RVVDG-NFDDPRLTDYDTLLENVRD----L 129 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~~~----~-~-------R~Ig~-vfQdp~l~d~~tV~enL~~----L 129 (621)
+|||+|+.||||||+++.++... +...|..|.... . . ...|- ++......+...+.+.+.. +
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~-~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~~ 79 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKY-HFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEEL 79 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc-CCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHHH
Confidence 48999999999999999998864 355677775410 0 0 01110 1111112222222222110 0
Q ss_pred hcCCCccCccccccccCccCCceeec-CCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCcee
Q 038045 130 REGKPVQVPIYDFESSSRTGYRTVEV-PSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEE 208 (621)
Q Consensus 130 ~~gk~V~~p~yd~~~~~rsggq~qrV-a~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~ 208 (621)
..-..+-.|.......... ... ....+++++..++...+....+|..++++++.+.+..|.+. +.|.+...
T Consensus 80 ~~le~ilhP~i~~~i~~~i----~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~~~~~~~Rl~~----R~~~s~~~ 151 (188)
T TIGR00152 80 KWLNNLLHPLIREWMKKLL----AQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVSPQLQLERLMQ----RDNLTEEE 151 (188)
T ss_pred HHHHHhhCHHHHHHHHHHH----HHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECCHHHHHHHHHH----cCCCCHHH
Confidence 0000111121111110000 001 11147888886666567778999999999997765544443 44778777
Q ss_pred hHhHHHHHh
Q 038045 209 IIQQISETS 217 (621)
Q Consensus 209 VtHd~eea~ 217 (621)
+...+..+.
T Consensus 152 ~~~r~~~q~ 160 (188)
T TIGR00152 152 VQKRLASQM 160 (188)
T ss_pred HHHHHHhcC
Confidence 776665543
No 477
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=97.58 E-value=4.4e-05 Score=83.54 Aligned_cols=142 Identities=17% Similarity=0.250 Sum_probs=74.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCcc----c-cc-------ccccc-cCCCCcccccchHHHHHHH---
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNYN----D-SS-------RVVDG-NFDDPRLTDYDTLLENVRD--- 128 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~~----~-~~-------R~Ig~-vfQdp~l~d~~tV~enL~~--- 128 (621)
|.+|||+|+.||||||+++.|+. + +.-+|..|... . .. ...|- +.+....++...+.+.+..
T Consensus 1 m~~IgltG~igsGKStv~~~L~~-~-G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~ 78 (395)
T PRK03333 1 MLRIGLTGGIGAGKSTVAARLAE-L-GAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDE 78 (395)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-C-CCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHH
Confidence 35799999999999999999988 3 55567777431 0 00 01111 1111223343333333221
Q ss_pred -HhcCCCccCccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCce
Q 038045 129 -LREGKPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPE 207 (621)
Q Consensus 129 -L~~gk~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~ 207 (621)
...-..+-.|..-....+. ........+++.+..+++.......+|..|+++++.+.++ .|...++|.+..
T Consensus 79 ~~~~le~i~hP~I~~~i~~~----i~~~~~~~vvv~eipLL~E~~~~~~~D~iI~V~ap~e~ri----~Rl~~rRg~s~~ 150 (395)
T PRK03333 79 ARAVLNGIVHPLVGARRAEL----IAAAPEDAVVVEDIPLLVESGMAPLFHLVVVVDADVEVRV----RRLVEQRGMAEA 150 (395)
T ss_pred HHHHHHHhhhHHHHHHHHHH----HHhcCCCCEEEEEeeeeecCCchhhCCEEEEEECCHHHHH----HHHHhcCCCCHH
Confidence 0000011111111000000 0001122455555555555677789999999999877643 344445788877
Q ss_pred ehHhHHHHH
Q 038045 208 EIIQQISET 216 (621)
Q Consensus 208 ~VtHd~eea 216 (621)
.+...+..+
T Consensus 151 ~a~~ri~~Q 159 (395)
T PRK03333 151 DARARIAAQ 159 (395)
T ss_pred HHHHHHHhc
Confidence 776665543
No 478
>PLN02422 dephospho-CoA kinase
Probab=97.57 E-value=5.2e-05 Score=77.61 Aligned_cols=143 Identities=14% Similarity=0.104 Sum_probs=76.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCcc----c-c-------cccccc-cCCCCcccccchHHHHHHH----
Q 038045 66 ILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNYN----D-S-------SRVVDG-NFDDPRLTDYDTLLENVRD---- 128 (621)
Q Consensus 66 iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~~----~-~-------~R~Ig~-vfQdp~l~d~~tV~enL~~---- 128 (621)
.+|||+|+.||||||+++.|.. + +..+|..|... . . ....|- ++.....+|...+.+.+..
T Consensus 2 ~~igltG~igsGKstv~~~l~~-~-g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~ 79 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFKS-S-GIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSK 79 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-C-CCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHH
Confidence 4799999999999999999985 3 55567777531 0 0 011111 1111222333333332221
Q ss_pred HhcCCCccCccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCcee
Q 038045 129 LREGKPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEE 208 (621)
Q Consensus 129 L~~gk~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~ 208 (621)
+..-..+-.|........... ........++++|..+++.......+|..|+|+++.+.+ +.|...+.|.+.+.
T Consensus 80 ~~~Le~IlHP~V~~~~~~~~~--~~~~~~~~~vv~eipLL~E~~~~~~~D~vI~V~a~~e~r----i~RL~~R~g~s~ee 153 (232)
T PLN02422 80 RQLLNRLLAPYISSGIFWEIL--KLWLKGCKVIVLDIPLLFETKMDKWTKPVVVVWVDPETQ----LERLMARDGLSEEQ 153 (232)
T ss_pred HHHHHHHhhHHHHHHHHHHHH--HHHhcCCCEEEEEehhhhhcchhhhCCEEEEEECCHHHH----HHHHHHcCCCCHHH
Confidence 000011111211111000000 000112368999998888777778899999999987764 33444445777777
Q ss_pred hHhHHHHH
Q 038045 209 IIQQISET 216 (621)
Q Consensus 209 VtHd~eea 216 (621)
+...+...
T Consensus 154 a~~Ri~~Q 161 (232)
T PLN02422 154 ARNRINAQ 161 (232)
T ss_pred HHHHHHHc
Confidence 76665443
No 479
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.56 E-value=5.6e-05 Score=76.42 Aligned_cols=56 Identities=18% Similarity=0.195 Sum_probs=37.8
Q ss_pred cEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCC--ceehHhHHHHH
Q 038045 159 RIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQE--PEEIIQQISET 216 (621)
Q Consensus 159 rVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~T--i~~VtHd~eea 216 (621)
.-+|+||.= +..-+++.-|+|+|++++.+.+..||..... ..|.+ .+.+..++.+.
T Consensus 121 ~~~V~dGRD-iGTvV~PdA~lKiFLtAS~e~RA~RR~~q~~-~~g~~~~~e~ll~eI~~R 178 (222)
T COG0283 121 PGIVADGRD-IGTVVFPDAELKIFLTASPEERAERRYKQLQ-AKGFSEVFEELLAEIKER 178 (222)
T ss_pred CCEEEecCC-CcceECCCCCeEEEEeCCHHHHHHHHHHHHH-hccCcchHHHHHHHHHHh
Confidence 347788741 1224778899999999999999999988765 44533 34455444433
No 480
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.55 E-value=4.8e-05 Score=76.95 Aligned_cols=39 Identities=21% Similarity=0.223 Sum_probs=33.8
Q ss_pred cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 48 FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 48 ~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
...+-++++|...+++ +++|+||||+||||+++.++...
T Consensus 16 ~~~v~ndi~l~~~~~~---~~~itG~n~~gKs~~l~~i~~~~ 54 (218)
T cd03286 16 SSFVPNDVDLGATSPR---ILVLTGPNMGGKSTLLRTVCLAV 54 (218)
T ss_pred CCeEEeeeEEeecCCc---EEEEECCCCCchHHHHHHHHHHH
Confidence 3457788888898888 99999999999999999998864
No 481
>PRK06762 hypothetical protein; Provisional
Probab=97.55 E-value=0.00021 Score=67.81 Aligned_cols=33 Identities=24% Similarity=0.398 Sum_probs=26.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEEC
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNFMPSIAVISMD 98 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lD 98 (621)
+.+|+|.|++||||||+++.|+..++. +.+.++
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~-~~~~i~ 34 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGR-GTLLVS 34 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC-CeEEec
Confidence 458999999999999999999998832 444444
No 482
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=97.54 E-value=3.7e-05 Score=89.44 Aligned_cols=89 Identities=9% Similarity=0.053 Sum_probs=60.2
Q ss_pred ccCccCCceeecCCccEEEEec---ceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccc
Q 038045 144 SSSRTGYRTVEVPSSRIVIIEG---IYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKN 220 (621)
Q Consensus 144 ~~~rsggq~qrVa~ArVLIvEG---~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~ 220 (621)
...+|||+.||+..|.-|--.+ .+-++|||+..|.+ .|+..+-++...+...|-|++.|.|.+...
T Consensus 820 atTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~-------~Di~kLl~VL~rLvd~GnTViVIEHNLdVI---- 888 (935)
T COG0178 820 ATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHF-------DDIKKLLEVLHRLVDKGNTVIVIEHNLDVI---- 888 (935)
T ss_pred cccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCH-------HHHHHHHHHHHHHHhCCCEEEEEecccceE----
Confidence 4578999999987765555444 56678999999886 445555555556668899999999997654
Q ss_pred cccchhhhcCC------CCceeeccCceeE
Q 038045 221 LSVDQIKAVYP------EGHTETMEQTYDI 244 (621)
Q Consensus 221 v~~~d~iavl~------eg~Ie~~~~~aDI 244 (621)
+-+|.+..+- .|.+..++++.++
T Consensus 889 -k~AD~IIDLGPeGG~~GG~iva~GTPeev 917 (935)
T COG0178 889 -KTADWIIDLGPEGGDGGGEIVASGTPEEV 917 (935)
T ss_pred -eecCEEEEcCCCCCCCCceEEEecCHHHH
Confidence 2333332222 3466666666666
No 483
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=97.53 E-value=0.00016 Score=80.46 Aligned_cols=47 Identities=21% Similarity=0.193 Sum_probs=42.2
Q ss_pred EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECC
Q 038045 49 FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDN 99 (621)
Q Consensus 49 ~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg 99 (621)
..+++.++ .+.+|+ .++|.||||||||||+++|+++. |+.|+|.+.|
T Consensus 153 i~aID~L~-~I~~Gq---ri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liG 200 (450)
T PRK06002 153 VRVIDIFT-PLCAGQ---RIGIFAGSGVGKSTLLAMLARADAFDTVVIALVG 200 (450)
T ss_pred cEEeeeec-eecCCc---EEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecc
Confidence 57888885 899999 89999999999999999999998 8888888754
No 484
>PRK13695 putative NTPase; Provisional
Probab=97.50 E-value=2.1e-05 Score=75.67 Aligned_cols=23 Identities=43% Similarity=0.808 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLl 89 (621)
.++|+|++|||||||++.|++.+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999998876
No 485
>cd07890 CYTH-like_AC_IV-like Adenylyl cyclase (AC) class IV-like, a subgroup of the CYTH-like superfamily. This subgroup contains class IV ACs and similar proteins. AC catalyzes the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. cAMP is a key signaling molecule which conveys a variety of signals in different cell types. In prokaryotes, cAMP is a catabolite derepression signal which triggers the expression of metabolic pathways including the lactose operon. Six non-homologous classes of ACs have been identified (I-VI). Class IV ACs are found in this group. In bacteria, the gene encoding Class IV AC has been designated cyaB and the protein as AC2. AC-IV occurs in addition to AC-I in bacterial pathogens such as Yersinia pestis (plague disease). The role of AC-IV is unknown but it has been speculated that it may be a factor in pathogenesis, perhaps providing cAMP for a secondary internal signaling function, or for secretion and uptake into host cells, where it may disrupt normal cel
Probab=97.48 E-value=0.00038 Score=67.17 Aligned_cols=126 Identities=23% Similarity=0.277 Sum_probs=95.9
Q ss_pred CceeEEecCCCCCcccccceeEEeecC--CeeEEEeeeeecCCCeEeccceeeEEEee----eecceeccCceEEEEEee
Q 038045 240 QTYDIYLLPPGEDPESCQSYLRMRNKD--GKYSLMFEEWVTDIPFVISPRITFEVSVR----LLGGLMALGYTIATILKR 313 (621)
Q Consensus 240 ~~aDIYi~P~~~~~e~~~d~Irvr~~~--g~~~L~f~e~i~d~~fIi~P~~~FeV~~~----~LgGll~lgy~i~~~~~~ 313 (621)
...|+|...|+........++|+|..+ +.+.+.+......+.+-.+ ..+++.+. +..-|..+||.....++-
T Consensus 30 ~q~d~Yfd~p~~~l~~~~~~LRiR~~~~~~~~~lT~K~~~~~~~~~~~--~E~e~~v~~~~~~~~iL~~lg~~~~~~~~K 107 (169)
T cd07890 30 FQEDIYFDHPDRDLAATDEALRLRRMGDSGKTLLTYKGPKLDGGPKVR--EEIETEVADPEAMKEILERLGFGPVGRVKK 107 (169)
T ss_pred eEeEEEEcCCchhHHhCCCcEEEEEeCCCCcEEEEEECCCCCCCccce--EEEEEecCCHHHHHHHHHHcCCceeEEEEE
Confidence 456777777776666667799999987 8887777544333322222 23444332 222355789999999999
Q ss_pred cceeeeCCCceEEehhhHhhcCceeEEEecc------cHHHHHHHHHHhCCCC-CccchhHHH
Q 038045 314 SSHVFCDDRGVCVKIDWLEQLNRQYIQVQGK------DRLIVKNVAEQLGLEG-SYVPRTYIE 369 (621)
Q Consensus 314 ~~~i~~d~~gv~i~v~~le~l~~~~i~i~g~------~r~~V~~~~~~L~l~g-~~i~~~y~e 369 (621)
...+|.-+. +.+.+|+++.+|. |+-|-+. .+..+..++.+||+.+ .-+++||+|
T Consensus 108 ~R~~~~~~~-~~v~lD~~~~lG~-f~EiE~~~~~~~~~~~~l~~~~~~lg~~~~~~~~~sy~~ 168 (169)
T cd07890 108 EREIYLLGQ-TRVHLDRVEGLGD-FVEIEVVLEDIEEAEEGLGEAAELLGLLEYDEETLSYLE 168 (169)
T ss_pred EEEEEEECC-EEEEEEccCCCCc-eEEEEEEeCCcHHHHHHHHHHHHHcCCCccCchhhhhhc
Confidence 999999888 9999999999987 9999998 8899999999999977 789999986
No 486
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=97.40 E-value=0.00012 Score=86.72 Aligned_cols=145 Identities=12% Similarity=0.055 Sum_probs=80.2
Q ss_pred eeeeeCcEEEEe-----ecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC--CCee-EEEECCcccccccccccCCC
Q 038045 42 LSFEKGFFVVIR-----ACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM--PSIA-VISMDNYNDSSRVVDGNFDD 113 (621)
Q Consensus 42 lsf~~G~~~~Lk-----~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl--P~sG-vI~lDg~~~~~R~Ig~vfQd 113 (621)
+.+..+.|+++. ..++.+..+. .++.|+|||++||||+++.+.... ..+| -|..... ..+++..+-
T Consensus 301 i~l~~~rHPll~~~~~Vpndi~l~~~~--~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~----~~i~~~~~i 374 (782)
T PRK00409 301 IDLRQARHPLLDGEKVVPKDISLGFDK--TVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEP----SEIPVFKEI 374 (782)
T ss_pred EEEcCcCCceeccCceECceeEECCCc--eEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCC----ccccccceE
Confidence 556667777773 3455555443 278999999999999999986542 3333 1222110 011111000
Q ss_pred Cc-ccccchHHHHHHHHhcCCCccCccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchHHHH
Q 038045 114 PR-LTDYDTLLENVRDLREGKPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLV 192 (621)
Q Consensus 114 p~-l~d~~tV~enL~~L~~gk~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~Li 192 (621)
+. .-+...+.++ .+..+++..+.+...+.+ -++.++++|||...+|+. ....+.
T Consensus 375 ~~~ig~~~si~~~------------------lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~------eg~ala 429 (782)
T PRK00409 375 FADIGDEQSIEQS------------------LSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPD------EGAALA 429 (782)
T ss_pred EEecCCccchhhc------------------hhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHH------HHHHHH
Confidence 00 0011111111 122233333333333333 467889999999999973 122344
Q ss_pred HHHHHHHHHcCCCceehHhHHHHHh
Q 038045 193 KRVLRDIQRVGQEPEEIIQQISETS 217 (621)
Q Consensus 193 rRI~Rdl~erG~Ti~~VtHd~eea~ 217 (621)
..+...+.+.|.+++.+||+.+...
T Consensus 430 ~aile~l~~~~~~vIitTH~~el~~ 454 (782)
T PRK00409 430 ISILEYLRKRGAKIIATTHYKELKA 454 (782)
T ss_pred HHHHHHHHHCCCEEEEECChHHHHH
Confidence 5566666777999999999976553
No 487
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.36 E-value=0.0003 Score=78.99 Aligned_cols=36 Identities=31% Similarity=0.482 Sum_probs=30.7
Q ss_pred EEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 51 VIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 51 ~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
++++.++.+..|. +++++||||+||||++.+|++.+
T Consensus 245 ~~~~~~~~~~~g~---Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 245 VLDSEDALLDRGG---VFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred hccCccccccCCc---EEEEECCCCccHHHHHHHHHHHH
Confidence 4556666677777 99999999999999999999976
No 488
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=97.35 E-value=0.00015 Score=69.68 Aligned_cols=55 Identities=15% Similarity=0.178 Sum_probs=39.7
Q ss_pred ECCCCCcHHHHHHHHHhhCCCeeEEEECCcc--c----ccccccccCCCCcccccchHHHHHHH
Q 038045 71 AGPSGAGKTIFTEKILNFMPSIAVISMDNYN--D----SSRVVDGNFDDPRLTDYDTLLENVRD 128 (621)
Q Consensus 71 ~GpSGSGKSTLlr~LagLlP~sGvI~lDg~~--~----~~R~Ig~vfQdp~l~d~~tV~enL~~ 128 (621)
+|+|||||||++++|++.+ |.+.+|+-. . .....|+.||+....++.+...++.+
T Consensus 1 ~G~sGsGKSTla~~la~~l---~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 61 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQL---HAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAF 61 (163)
T ss_pred CCCCCCcHHHHHHHHHHHh---CCeEEeCccCCchhhhccccCCCCCChhhHHHHHHHHHHHHH
Confidence 5999999999999999988 345555532 1 11235777887666777777777766
No 489
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=97.34 E-value=0.00012 Score=81.22 Aligned_cols=48 Identities=27% Similarity=0.278 Sum_probs=42.1
Q ss_pred EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCc
Q 038045 49 FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNY 100 (621)
Q Consensus 49 ~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~ 100 (621)
..+++.+ +.+.+|+ .++|.|++|+|||||+++|++.. ++.|.|.+.|.
T Consensus 144 iraID~l-l~I~~Gq---ri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGe 192 (432)
T PRK06793 144 IKSIDSM-LTIGIGQ---KIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGE 192 (432)
T ss_pred CEEEecc-ceecCCc---EEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCC
Confidence 3578885 9999999 89999999999999999999988 78888877664
No 490
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.33 E-value=0.00026 Score=58.46 Aligned_cols=31 Identities=23% Similarity=0.478 Sum_probs=25.8
Q ss_pred ceEEeC-CCcceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 56 QLLAQK-NDGIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 56 sL~I~~-Ge~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
.+.+.+ |+ ++.|.|+|||||||++.+|.-++
T Consensus 16 ~~~~~~~g~---~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 16 TIDFDPRGD---VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEeecCCCc---EEEEECCCCCCHHHHHHHHHHHH
Confidence 444544 45 89999999999999999999887
No 491
>PRK04040 adenylate kinase; Provisional
Probab=97.29 E-value=0.00033 Score=69.18 Aligned_cols=36 Identities=19% Similarity=0.401 Sum_probs=29.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhhCC-CeeEEEECCc
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNFMP-SIAVISMDNY 100 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagLlP-~sGvI~lDg~ 100 (621)
+.+|+|+|++||||||+++.|+..++ +.-.++++++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~ 38 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDV 38 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchH
Confidence 45899999999999999999999885 5556666654
No 492
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.28 E-value=0.00019 Score=75.96 Aligned_cols=43 Identities=21% Similarity=0.405 Sum_probs=36.4
Q ss_pred cceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCc
Q 038045 55 CQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNY 100 (621)
Q Consensus 55 IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~ 100 (621)
+++.++.++ .++|+||+|||||||+++|.+.+ +..+.+.+++.
T Consensus 137 l~~~v~~~~---~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~ 180 (308)
T TIGR02788 137 LRLAIASRK---NIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDT 180 (308)
T ss_pred HHHHhhCCC---EEEEECCCCCCHHHHHHHHHccCCccccEEEEcCc
Confidence 446677888 89999999999999999999999 56777888653
No 493
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.28 E-value=0.00022 Score=69.84 Aligned_cols=28 Identities=43% Similarity=0.695 Sum_probs=25.5
Q ss_pred eCCCcceEEEEECCCCCcHHHHHHHHHhhCC
Q 038045 60 QKNDGIILIGLAGPSGAGKTIFTEKILNFMP 90 (621)
Q Consensus 60 ~~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP 90 (621)
++|+ +++|+||||||||||+++|++.+|
T Consensus 3 ~~g~---~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGL---LIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCC---EEEEECCCCCCHHHHHHHHHhhCc
Confidence 4677 999999999999999999999875
No 494
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=97.27 E-value=0.0002 Score=70.71 Aligned_cols=29 Identities=7% Similarity=-0.140 Sum_probs=23.8
Q ss_pred eeecCCccEEEEecceecccccc-----CCCCee
Q 038045 152 TVEVPSSRIVIIEGIYALSEKLR-----PLLDLR 180 (621)
Q Consensus 152 ~qrVa~ArVLIvEG~lLLlDEp~-----s~LDlk 180 (621)
.+.+..++.++.++.+++.|||+ ..||+.
T Consensus 158 ~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~ 191 (215)
T PTZ00132 158 KPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPE 191 (215)
T ss_pred HHHHHHHHHHhhcccceecCCcccCCCccccCHH
Confidence 33356688899999999999999 999973
No 495
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=97.27 E-value=0.00042 Score=74.32 Aligned_cols=48 Identities=23% Similarity=0.266 Sum_probs=42.5
Q ss_pred EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCc
Q 038045 49 FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNY 100 (621)
Q Consensus 49 ~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~ 100 (621)
..+++.+ +.+.+|+ .++|.|+||+|||||+++|++.. ++++++..-|.
T Consensus 57 i~aiD~l-~~i~~Gq---ri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGe 105 (326)
T cd01136 57 VRAIDGL-LTVGKGQ---RLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGE 105 (326)
T ss_pred cEEEeee-eEEcCCc---EEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEec
Confidence 5689999 9999999 89999999999999999999998 77777766553
No 496
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.23 E-value=0.00093 Score=65.88 Aligned_cols=27 Identities=22% Similarity=0.365 Sum_probs=23.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhhCCC
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNFMPS 91 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagLlP~ 91 (621)
+.+|.|+||||||||||++.|....|.
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~~~ 30 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEHPD 30 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcCCc
Confidence 569999999999999999999886654
No 497
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.23 E-value=0.00032 Score=69.08 Aligned_cols=50 Identities=16% Similarity=0.191 Sum_probs=36.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhhC-C-CeeEEEECCcccc---cccccccCCCC
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNFM-P-SIAVISMDNYNDS---SRVVDGNFDDP 114 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagLl-P-~sGvI~lDg~~~~---~R~Ig~vfQdp 114 (621)
+.+++|+|++|||||||++.|++.+ + +.|.+.+|+-... ...++|.+++.
T Consensus 24 ~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~~~~~~~~~~ 78 (198)
T PRK03846 24 GVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCSDLGFSDADR 78 (198)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhhcCCcCcccH
Confidence 4499999999999999999999987 3 5678999874211 12355555543
No 498
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.23 E-value=0.00024 Score=69.29 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=22.2
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLl 89 (621)
+++|+||||||||||+++|++..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 89999999999999999999987
No 499
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.21 E-value=0.0004 Score=74.12 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=27.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEEC
Q 038045 66 ILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMD 98 (621)
Q Consensus 66 iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lD 98 (621)
.+++++|||||||||++..|++.+ +..+.|.+.
T Consensus 115 ~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li 148 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLA 148 (318)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEE
Confidence 499999999999999999999988 554555543
No 500
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=97.20 E-value=0.00036 Score=77.58 Aligned_cols=48 Identities=23% Similarity=0.289 Sum_probs=43.6
Q ss_pred EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCc
Q 038045 49 FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNY 100 (621)
Q Consensus 49 ~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~ 100 (621)
..+++++ +.+.+|+ +++|.|+||+|||||+++|++.. |+.|.|.+.|.
T Consensus 146 ~~vid~l-~~i~~Gq---~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Ge 194 (438)
T PRK07721 146 VRAIDSL-LTVGKGQ---RVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGE 194 (438)
T ss_pred hhhhhee-eeecCCc---EEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEec
Confidence 3579999 9999999 89999999999999999999998 88899988654
Done!