Query 038045
Match_columns 621
No_of_seqs 409 out of 3077
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 11:39:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038045.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038045hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fvq_A Fe(3+) IONS import ATP- 100.0 1.7E-30 5.9E-35 275.9 6.8 202 37-251 5-233 (359)
2 3rlf_A Maltose/maltodextrin im 100.0 1.9E-30 6.7E-35 277.4 5.2 203 37-252 4-229 (381)
3 2yyz_A Sugar ABC transporter, 100.0 1.6E-29 5.5E-34 268.5 9.1 202 37-251 4-228 (359)
4 3tui_C Methionine import ATP-b 100.0 7.4E-30 2.5E-34 271.7 1.1 251 37-301 25-324 (366)
5 1g29_1 MALK, maltose transport 99.9 4E-29 1.4E-33 266.5 5.7 202 37-251 4-234 (372)
6 1v43_A Sugar-binding transport 99.9 4.8E-29 1.6E-33 266.0 6.0 202 37-251 12-236 (372)
7 2it1_A 362AA long hypothetical 99.9 4.3E-29 1.5E-33 265.5 4.6 202 37-251 4-228 (362)
8 1oxx_K GLCV, glucose, ABC tran 99.9 5.5E-29 1.9E-33 263.7 4.5 202 37-251 4-235 (353)
9 1z47_A CYSA, putative ABC-tran 99.9 4.6E-29 1.6E-33 264.6 2.9 202 37-251 15-240 (355)
10 3d31_A Sulfate/molybdate ABC t 99.9 8.6E-29 2.9E-33 261.9 4.8 201 38-252 3-223 (348)
11 1b0u_A Histidine permease; ABC 99.9 2.5E-27 8.7E-32 240.6 6.7 194 37-244 7-240 (262)
12 3tif_A Uncharacterized ABC tra 99.9 2.9E-27 9.9E-32 236.5 6.5 190 39-243 4-231 (235)
13 2olj_A Amino acid ABC transpor 99.9 3.6E-27 1.2E-31 240.3 7.0 194 37-244 25-246 (263)
14 2pcj_A ABC transporter, lipopr 99.9 1.2E-26 4E-31 230.3 7.6 187 37-238 5-220 (224)
15 3gfo_A Cobalt import ATP-bindi 99.9 3.7E-27 1.3E-31 241.7 4.0 194 37-244 8-231 (275)
16 4g1u_C Hemin import ATP-bindin 99.9 7E-27 2.4E-31 238.2 5.6 194 37-244 12-235 (266)
17 1ji0_A ABC transporter; ATP bi 99.9 1.3E-26 4.6E-31 232.1 7.5 194 37-244 7-226 (240)
18 1g6h_A High-affinity branched- 99.9 1.4E-26 4.8E-31 234.2 6.7 193 37-243 8-239 (257)
19 1vpl_A ABC transporter, ATP-bi 99.9 1.4E-26 4.9E-31 234.8 6.2 193 38-244 17-233 (256)
20 3gd7_A Fusion complex of cysti 99.9 5.6E-27 1.9E-31 251.4 -0.7 280 37-342 20-338 (390)
21 2onk_A Molybdate/tungstate ABC 99.9 7E-26 2.4E-30 227.6 6.9 191 38-245 3-215 (240)
22 2yz2_A Putative ABC transporte 99.9 1.3E-25 4.3E-30 228.4 4.8 194 37-244 3-225 (266)
23 2ihy_A ABC transporter, ATP-bi 99.9 1.3E-25 4.5E-30 230.4 3.5 195 36-244 21-250 (279)
24 2d2e_A SUFC protein; ABC-ATPas 99.9 4.3E-25 1.5E-29 222.4 6.8 190 37-240 4-227 (250)
25 1sgw_A Putative ABC transporte 99.9 4E-25 1.4E-29 218.9 5.7 179 35-228 9-204 (214)
26 2ff7_A Alpha-hemolysin translo 99.9 1.9E-25 6.6E-30 225.0 3.4 192 37-245 8-231 (247)
27 2ixe_A Antigen peptide transpo 99.9 2.1E-25 7.2E-30 227.8 3.2 192 37-244 17-243 (271)
28 3nh6_A ATP-binding cassette SU 99.9 3.6E-25 1.2E-29 230.4 4.9 191 37-244 54-275 (306)
29 2nq2_C Hypothetical ABC transp 99.9 1.1E-24 3.6E-29 220.5 5.6 187 37-244 5-215 (253)
30 1mv5_A LMRA, multidrug resista 99.9 3.5E-25 1.2E-29 222.1 1.8 190 38-244 3-224 (243)
31 2zu0_C Probable ATP-dependent 99.9 8E-25 2.7E-29 222.8 3.0 194 37-244 21-252 (267)
32 2qi9_C Vitamin B12 import ATP- 99.9 1.8E-24 6.3E-29 218.5 2.8 189 37-244 5-220 (249)
33 2ghi_A Transport protein; mult 99.9 3.8E-24 1.3E-28 217.1 1.7 192 36-244 17-240 (260)
34 2pze_A Cystic fibrosis transme 99.9 9.5E-24 3.3E-28 210.1 3.9 185 37-244 7-216 (229)
35 2pjz_A Hypothetical protein ST 99.9 1.3E-23 4.4E-28 214.1 4.7 187 38-244 3-213 (263)
36 2cbz_A Multidrug resistance-as 99.9 3.7E-24 1.3E-28 214.3 0.3 185 37-244 4-215 (237)
37 3b5x_A Lipid A export ATP-bind 99.9 7E-23 2.4E-27 228.7 4.1 191 37-244 342-565 (582)
38 2yl4_A ATP-binding cassette SU 99.9 1.5E-22 5.2E-27 226.5 5.5 192 37-245 342-569 (595)
39 3qf4_A ABC transporter, ATP-bi 99.8 8.5E-23 2.9E-27 228.7 1.3 191 37-244 342-564 (587)
40 3b60_A Lipid A export ATP-bind 99.8 1.3E-22 4.4E-27 226.6 2.6 191 37-244 342-565 (582)
41 4a82_A Cystic fibrosis transme 99.8 9E-23 3.1E-27 227.8 0.8 191 37-244 340-562 (578)
42 3qf4_B Uncharacterized ABC tra 99.8 8.9E-23 3E-27 228.9 -0.8 191 37-244 355-576 (598)
43 2bbs_A Cystic fibrosis transme 99.8 6.1E-22 2.1E-26 204.4 1.3 182 37-244 41-245 (290)
44 3g5u_A MCG1178, multidrug resi 99.8 8.9E-21 3E-25 229.1 3.9 191 37-244 388-611 (1284)
45 4f4c_A Multidrug resistance pr 99.8 7.4E-21 2.5E-25 230.4 -1.5 192 37-245 1077-1303(1321)
46 1yqt_A RNAse L inhibitor; ATP- 99.8 1E-19 3.5E-24 202.2 6.7 175 37-232 288-477 (538)
47 3tqc_A Pantothenate kinase; bi 99.8 1.4E-19 4.9E-24 189.6 7.1 217 37-254 61-312 (321)
48 3g5u_A MCG1178, multidrug resi 99.8 1.5E-20 5.1E-25 227.2 -0.7 191 37-244 1031-1256(1284)
49 3ozx_A RNAse L inhibitor; ATP 99.8 2.1E-19 7.3E-24 199.8 7.6 176 37-232 270-461 (538)
50 3bk7_A ABC transporter ATP-bin 99.8 1.1E-19 3.7E-24 204.8 4.9 174 37-231 358-546 (607)
51 4f4c_A Multidrug resistance pr 99.8 8.2E-20 2.8E-24 221.3 2.0 191 37-244 416-639 (1321)
52 3j16_B RLI1P; ribosome recycli 99.7 8.9E-19 3E-23 197.4 5.0 185 40-244 350-557 (608)
53 1yqt_A RNAse L inhibitor; ATP- 99.7 2.3E-19 7.8E-24 199.4 0.1 178 39-231 24-232 (538)
54 3c8u_A Fructokinase; YP_612366 99.7 3.6E-18 1.2E-22 165.6 7.9 171 60-246 20-205 (208)
55 3asz_A Uridine kinase; cytidin 99.7 4.9E-18 1.7E-22 163.4 8.7 177 60-251 4-188 (211)
56 3ux8_A Excinuclease ABC, A sub 99.7 5.2E-19 1.8E-23 200.5 1.0 182 48-244 30-296 (670)
57 1sq5_A Pantothenate kinase; P- 99.7 1.9E-18 6.7E-23 178.4 4.8 200 40-252 41-298 (308)
58 3bk7_A ABC transporter ATP-bin 99.7 6.2E-19 2.1E-23 198.7 0.9 178 40-232 95-303 (607)
59 2iw3_A Elongation factor 3A; a 99.7 3.2E-18 1.1E-22 201.1 0.7 181 37-238 672-979 (986)
60 2iw3_A Elongation factor 3A; a 99.7 1E-17 3.6E-22 196.8 3.9 184 36-243 435-632 (986)
61 2jeo_A Uridine-cytidine kinase 99.6 2E-16 6.7E-21 157.2 5.7 185 44-250 7-215 (245)
62 3ux8_A Excinuclease ABC, A sub 99.6 3.6E-17 1.2E-21 185.4 0.5 92 141-244 538-638 (670)
63 2npi_A Protein CLP1; CLP1-PCF1 99.6 9E-18 3.1E-22 183.6 -11.2 170 39-236 121-329 (460)
64 3j16_B RLI1P; ribosome recycli 99.6 1.5E-16 5E-21 179.4 -2.0 179 40-233 81-297 (608)
65 3aez_A Pantothenate kinase; tr 99.6 3.7E-15 1.3E-19 155.1 8.5 184 59-252 87-301 (312)
66 3ozx_A RNAse L inhibitor; ATP 99.5 1.8E-16 6.1E-21 176.4 -2.6 158 59-232 22-212 (538)
67 2ga8_A Hypothetical 39.9 kDa p 99.5 4.5E-15 1.5E-19 157.5 -0.2 146 93-250 157-352 (359)
68 4gp7_A Metallophosphoesterase; 99.5 1.5E-15 5E-20 143.5 -4.0 148 54-217 1-163 (171)
69 1z6g_A Guanylate kinase; struc 99.5 1.9E-14 6.6E-19 141.2 3.5 154 46-217 7-198 (218)
70 1a7j_A Phosphoribulokinase; tr 99.4 5.5E-14 1.9E-18 144.6 5.5 169 65-244 5-204 (290)
71 3b85_A Phosphate starvation-in 99.4 1.1E-15 3.6E-20 150.5 -7.3 145 47-217 11-162 (208)
72 3pih_A Uvrabc system protein A 99.4 5E-14 1.7E-18 165.1 2.6 93 141-245 800-901 (916)
73 1uj2_A Uridine-cytidine kinase 99.4 8.5E-13 2.9E-17 131.5 10.5 152 63-215 20-189 (252)
74 2vf7_A UVRA2, excinuclease ABC 99.4 4.2E-14 1.4E-18 164.5 0.3 92 141-244 725-825 (842)
75 1odf_A YGR205W, hypothetical 3 99.4 1.2E-12 4.3E-17 134.8 10.7 147 63-210 29-242 (290)
76 2r6f_A Excinuclease ABC subuni 99.4 8.3E-14 2.8E-18 163.2 1.4 93 140-244 839-940 (972)
77 1znw_A Guanylate kinase, GMP k 99.4 9.1E-15 3.1E-19 141.5 -6.1 167 49-230 9-201 (207)
78 2ygr_A Uvrabc system protein A 99.3 2E-13 6.8E-18 160.5 1.6 92 141-244 858-958 (993)
79 4aby_A DNA repair protein RECN 99.3 3.6E-13 1.2E-17 142.6 0.4 71 147-230 296-368 (415)
80 3sop_A Neuronal-specific septi 99.3 5.5E-13 1.9E-17 135.9 1.7 133 66-213 3-150 (270)
81 2dpy_A FLII, flagellum-specifi 99.3 7E-14 2.4E-18 151.9 -6.3 179 39-244 134-342 (438)
82 2v9p_A Replication protein E1; 99.2 4E-13 1.4E-17 139.9 -1.7 148 38-244 103-264 (305)
83 3b9q_A Chloroplast SRP recepto 99.2 5E-13 1.7E-17 138.5 -1.1 141 52-211 90-255 (302)
84 1htw_A HI0065; nucleotide-bind 99.2 3.4E-13 1.2E-17 127.3 -5.6 86 39-128 10-97 (158)
85 2og2_A Putative signal recogni 99.2 2.3E-12 7.7E-17 137.0 -0.9 140 53-211 148-312 (359)
86 1rz3_A Hypothetical protein rb 99.2 1.5E-11 5.1E-16 118.5 4.6 132 66-198 23-165 (201)
87 2pt7_A CAG-ALFA; ATPase, prote 99.2 3.6E-13 1.2E-17 141.0 -7.4 131 50-233 159-290 (330)
88 1tq4_A IIGP1, interferon-induc 99.1 4.8E-13 1.6E-17 144.5 -10.2 127 50-180 37-200 (413)
89 1ye8_A Protein THEP1, hypothet 99.1 5.4E-12 1.8E-16 120.9 -1.9 123 67-211 2-138 (178)
90 2ehv_A Hypothetical protein PH 99.0 2.9E-12 1E-16 124.8 -5.7 151 58-216 26-185 (251)
91 1rj9_A FTSY, signal recognitio 99.0 6.1E-11 2.1E-15 123.0 1.5 139 61-213 101-258 (304)
92 4a74_A DNA repair and recombin 99.0 4.9E-12 1.7E-16 121.7 -7.6 144 59-215 22-182 (231)
93 3szr_A Interferon-induced GTP- 98.9 9.5E-11 3.2E-15 132.0 0.5 131 67-214 47-197 (608)
94 3qf7_A RAD50; ABC-ATPase, ATPa 98.9 5.4E-11 1.9E-15 125.9 -1.7 82 142-235 275-362 (365)
95 2eyu_A Twitching motility prot 98.9 4.5E-11 1.5E-15 121.3 -3.4 125 39-214 8-134 (261)
96 1tf7_A KAIC; homohexamer, hexa 98.9 4.5E-11 1.5E-15 131.8 -3.7 66 47-115 23-98 (525)
97 2obl_A ESCN; ATPase, hydrolase 98.9 2.3E-11 7.8E-16 128.5 -6.4 177 39-244 48-253 (347)
98 2qnr_A Septin-2, protein NEDD5 98.8 1.8E-10 6.2E-15 118.7 -1.5 151 40-214 2-168 (301)
99 1ewq_A DNA mismatch repair pro 98.8 1.3E-10 4.3E-15 134.4 -3.8 129 49-216 566-701 (765)
100 1e69_A Chromosome segregation 98.8 7.6E-10 2.6E-14 114.6 1.8 63 143-213 216-282 (322)
101 3tr0_A Guanylate kinase, GMP k 98.8 6E-10 2.1E-14 105.7 0.9 64 56-125 1-71 (205)
102 2qt1_A Nicotinamide riboside k 98.8 1.5E-08 5.2E-13 97.0 9.9 119 65-193 21-146 (207)
103 1s96_A Guanylate kinase, GMP k 98.8 1.9E-10 6.5E-15 113.8 -3.7 61 59-122 13-79 (219)
104 1cr0_A DNA primase/helicase; R 98.8 1.4E-10 4.8E-15 117.6 -5.3 157 50-213 23-197 (296)
105 2o8b_B DNA mismatch repair pro 98.8 1.8E-10 6E-15 136.8 -5.4 145 42-217 761-916 (1022)
106 2i3b_A HCR-ntpase, human cance 98.7 3.3E-10 1.1E-14 109.7 -5.4 47 67-114 3-54 (189)
107 3thx_A DNA mismatch repair pro 98.7 1.8E-09 6.2E-14 127.1 -0.3 126 49-214 649-786 (934)
108 2gza_A Type IV secretion syste 98.7 4.2E-09 1.5E-13 111.3 2.1 76 52-130 165-249 (361)
109 2yhs_A FTSY, cell division pro 98.7 7.5E-09 2.6E-13 114.3 3.8 76 52-130 283-372 (503)
110 1tf7_A KAIC; homohexamer, hexa 98.6 9.3E-10 3.2E-14 121.4 -4.3 141 56-213 275-417 (525)
111 3thx_B DNA mismatch repair pro 98.6 1.9E-09 6.6E-14 126.6 -3.2 136 48-215 659-798 (918)
112 4e22_A Cytidylate kinase; P-lo 98.6 1.3E-09 4.5E-14 109.0 -4.9 146 60-213 25-200 (252)
113 3e70_C DPA, signal recognition 98.5 6.1E-09 2.1E-13 109.2 -1.0 68 60-130 127-208 (328)
114 3jvv_A Twitching mobility prot 98.5 5.3E-09 1.8E-13 110.8 -1.9 121 58-231 119-244 (356)
115 2qag_C Septin-7; cell cycle, c 98.5 2.1E-09 7.2E-14 116.3 -5.1 154 38-212 13-176 (418)
116 2qm8_A GTPase/ATPase; G protei 98.5 3.8E-09 1.3E-13 110.7 -3.3 78 39-119 32-121 (337)
117 1wb9_A DNA mismatch repair pro 98.5 1.3E-08 4.5E-13 118.2 0.7 135 47-214 593-731 (800)
118 1zp6_A Hypothetical protein AT 98.5 6.5E-08 2.2E-12 90.8 4.9 64 59-128 6-74 (191)
119 2x8a_A Nuclear valosin-contain 98.5 2.8E-09 9.5E-14 108.4 -5.8 142 49-199 33-190 (274)
120 1pzn_A RAD51, DNA repair and r 98.5 2.9E-09 9.9E-14 112.1 -6.2 148 52-214 120-287 (349)
121 2w0m_A SSO2452; RECA, SSPF, un 98.4 1.3E-09 4.4E-14 104.3 -9.0 43 51-96 11-55 (235)
122 3euj_A Chromosome partition pr 98.4 4.8E-08 1.6E-12 107.6 1.9 49 49-101 17-66 (483)
123 1lw7_A Transcriptional regulat 98.4 5.4E-10 1.8E-14 117.5 -13.2 43 52-97 158-207 (365)
124 2qag_B Septin-6, protein NEDD5 98.4 1.5E-08 5.3E-13 109.9 -3.1 80 43-126 22-103 (427)
125 2bbw_A Adenylate kinase 4, AK4 98.4 1.7E-08 5.8E-13 99.8 -2.6 62 67-128 29-97 (246)
126 3lnc_A Guanylate kinase, GMP k 98.4 3.9E-08 1.3E-12 96.1 -0.9 38 50-90 15-53 (231)
127 1cke_A CK, MSSA, protein (cyti 98.3 1.6E-07 5.6E-12 90.5 3.4 45 158-204 123-167 (227)
128 1u0l_A Probable GTPase ENGC; p 98.3 5.8E-08 2E-12 99.9 -0.1 56 59-117 166-232 (301)
129 2f1r_A Molybdopterin-guanine d 98.3 3.8E-08 1.3E-12 94.0 -1.5 94 67-167 4-124 (171)
130 2f6r_A COA synthase, bifunctio 98.3 1.2E-07 4E-12 96.6 1.0 143 63-213 73-232 (281)
131 3d3q_A TRNA delta(2)-isopenten 98.3 8.8E-08 3E-12 101.2 -0.5 139 66-217 8-153 (340)
132 4eun_A Thermoresistant glucoki 98.2 3.7E-07 1.3E-11 87.3 3.1 66 57-128 24-95 (200)
133 1p9r_A General secretion pathw 98.2 1.3E-07 4.3E-12 102.4 -0.4 55 41-100 148-203 (418)
134 2j41_A Guanylate kinase; GMP, 98.2 3.8E-07 1.3E-11 86.3 2.9 56 58-116 2-62 (207)
135 1jjv_A Dephospho-COA kinase; P 98.2 4.7E-07 1.6E-11 86.4 3.3 52 159-214 106-157 (206)
136 1n0w_A DNA repair protein RAD5 98.2 6.9E-07 2.4E-11 86.4 4.1 40 59-101 21-68 (243)
137 3qkt_A DNA double-strand break 98.2 2.3E-07 8E-12 96.6 0.1 64 143-213 245-314 (339)
138 2grj_A Dephospho-COA kinase; T 98.2 3.6E-07 1.2E-11 88.6 1.3 121 65-193 12-146 (192)
139 1nlf_A Regulatory protein REPA 98.2 2.8E-07 9.7E-12 92.8 0.5 143 59-216 27-184 (279)
140 2bdt_A BH3686; alpha-beta prot 98.2 7E-07 2.4E-11 84.1 3.1 60 67-128 4-64 (189)
141 2yv5_A YJEQ protein; hydrolase 98.1 8.9E-07 3E-11 91.2 3.4 63 59-126 162-240 (302)
142 2vp4_A Deoxynucleoside kinase; 98.1 1.4E-08 4.8E-13 99.8 -10.1 36 59-100 17-52 (230)
143 1ixz_A ATP-dependent metallopr 98.1 2.2E-07 7.7E-12 91.7 -2.1 142 49-198 38-197 (254)
144 2if2_A Dephospho-COA kinase; a 98.1 3.1E-06 1E-10 80.5 5.8 33 66-100 2-34 (204)
145 1iy2_A ATP-dependent metallopr 98.1 1.8E-07 6.3E-12 94.0 -3.1 145 46-198 59-221 (278)
146 3uie_A Adenylyl-sulfate kinase 98.1 1.7E-07 5.9E-12 89.7 -3.1 57 41-100 4-62 (200)
147 1t9h_A YLOQ, probable GTPase E 98.1 6.6E-07 2.2E-11 93.2 0.8 67 57-127 168-248 (307)
148 2cvh_A DNA repair and recombin 98.0 9.6E-07 3.3E-11 84.1 1.6 37 59-99 17-53 (220)
149 3vaa_A Shikimate kinase, SK; s 98.0 1.9E-06 6.4E-11 82.4 2.7 50 47-100 10-59 (199)
150 3nwj_A ATSK2; P loop, shikimat 98.0 4.1E-07 1.4E-11 91.8 -2.1 57 38-98 19-80 (250)
151 3a00_A Guanylate kinase, GMP k 98.0 1.5E-06 5.1E-11 82.3 1.3 24 67-90 3-26 (186)
152 2oap_1 GSPE-2, type II secreti 98.0 1E-06 3.5E-11 97.5 0.2 48 51-101 249-297 (511)
153 2kjq_A DNAA-related protein; s 98.0 3.3E-06 1.1E-10 78.2 3.3 36 61-99 35-72 (149)
154 3ec2_A DNA replication protein 98.0 1.2E-06 4.2E-11 81.9 0.3 29 58-89 34-62 (180)
155 2ewv_A Twitching motility prot 97.9 1.4E-06 4.6E-11 92.6 0.5 38 59-99 133-172 (372)
156 2rcn_A Probable GTPase ENGC; Y 97.9 5.3E-06 1.8E-10 88.2 4.3 69 52-124 206-280 (358)
157 3r20_A Cytidylate kinase; stru 97.9 8.9E-06 3.1E-10 81.5 5.1 57 159-216 129-186 (233)
158 1yem_A Hypothetical protein; s 97.9 4.3E-05 1.5E-09 73.5 9.4 118 241-371 39-171 (179)
159 3t61_A Gluconokinase; PSI-biol 97.8 7E-06 2.4E-10 78.1 3.6 35 65-100 18-52 (202)
160 1knq_A Gluconate kinase; ALFA/ 97.8 5.4E-06 1.9E-10 76.8 2.3 56 67-125 10-71 (175)
161 1vht_A Dephospho-COA kinase; s 97.8 1.4E-05 4.9E-10 76.8 5.2 34 65-100 4-37 (218)
162 1uf9_A TT1252 protein; P-loop, 97.8 4.4E-06 1.5E-10 78.7 0.6 35 64-100 7-41 (203)
163 4i1u_A Dephospho-COA kinase; s 97.7 1E-05 3.5E-10 80.0 2.4 142 65-217 9-168 (210)
164 1ni3_A YCHF GTPase, YCHF GTP-b 97.7 4.5E-06 1.5E-10 89.6 -0.2 38 59-99 17-67 (392)
165 1qhl_A Protein (cell division 97.7 9.6E-07 3.3E-11 88.1 -5.2 41 56-100 22-63 (227)
166 1zu4_A FTSY; GTPase, signal re 97.7 1.5E-05 5.3E-10 83.0 3.7 45 52-99 95-140 (320)
167 1sxj_E Activator 1 40 kDa subu 97.7 3.9E-05 1.3E-09 78.7 6.4 40 60-100 32-73 (354)
168 3ake_A Cytidylate kinase; CMP 97.7 4.2E-05 1.5E-09 72.2 6.1 33 67-100 4-36 (208)
169 1lvg_A Guanylate kinase, GMP k 97.7 1.4E-05 4.8E-10 76.8 2.7 27 61-90 3-29 (198)
170 1kgd_A CASK, peripheral plasma 97.7 2.6E-05 8.9E-10 73.5 4.3 27 61-90 4-30 (180)
171 1in4_A RUVB, holliday junction 97.6 1.6E-05 5.5E-10 82.4 2.8 87 40-128 22-124 (334)
172 3lda_A DNA repair protein RAD5 97.6 1.6E-05 5.4E-10 85.6 2.3 39 59-100 175-221 (400)
173 1q3t_A Cytidylate kinase; nucl 97.6 2.3E-05 7.9E-10 76.8 2.7 33 67-100 18-50 (236)
174 1pui_A ENGB, probable GTP-bind 97.5 6.6E-06 2.3E-10 77.7 -1.6 45 39-89 6-50 (210)
175 2een_A Hypothetical protein PH 97.5 0.00016 5.6E-09 69.0 7.9 129 240-372 29-175 (183)
176 3ghx_A Adenylate cyclase CYAB; 97.5 0.00031 1.1E-08 67.4 9.2 123 240-372 40-178 (179)
177 3tau_A Guanylate kinase, GMP k 97.5 6.3E-05 2.2E-09 72.5 4.2 28 60-90 6-33 (208)
178 3kta_A Chromosome segregation 97.5 5E-05 1.7E-09 70.7 3.3 33 53-89 18-50 (182)
179 1svm_A Large T antigen; AAA+ f 97.5 2.4E-05 8.1E-10 83.6 1.1 61 49-114 156-218 (377)
180 1kag_A SKI, shikimate kinase I 97.4 6.2E-05 2.1E-09 69.2 3.4 23 67-89 6-28 (173)
181 1oix_A RAS-related protein RAB 97.4 0.00014 4.8E-09 68.5 5.2 38 63-100 27-76 (191)
182 2h92_A Cytidylate kinase; ross 97.3 0.00018 6.1E-09 69.0 5.6 35 65-100 3-37 (219)
183 1nij_A Hypothetical protein YJ 97.3 4.9E-05 1.7E-09 78.6 1.6 36 65-100 4-48 (318)
184 2zr9_A Protein RECA, recombina 97.3 6.2E-05 2.1E-09 79.3 2.2 39 59-100 58-98 (349)
185 2dc4_A PH1012 protein, 165AA l 97.3 0.0005 1.7E-08 64.5 8.1 120 241-371 31-163 (165)
186 1udx_A The GTP-binding protein 97.3 0.0001 3.4E-09 79.8 3.6 34 52-88 147-180 (416)
187 3kb2_A SPBC2 prophage-derived 97.3 0.00014 4.8E-09 66.3 3.7 34 66-100 2-35 (173)
188 1y63_A LMAJ004144AAA protein; 97.3 0.00015 5.1E-09 68.4 3.9 44 54-100 2-45 (184)
189 2pez_A Bifunctional 3'-phospho 97.3 7.4E-05 2.5E-09 69.6 1.8 34 67-100 7-42 (179)
190 1vma_A Cell division protein F 97.1 0.00013 4.3E-09 75.8 1.8 42 55-99 97-139 (306)
191 1ls1_A Signal recognition part 97.1 7.8E-05 2.7E-09 76.6 0.1 54 40-100 80-134 (295)
192 3cr8_A Sulfate adenylyltranfer 97.1 0.00017 5.8E-09 80.6 2.8 40 58-100 365-407 (552)
193 3ney_A 55 kDa erythrocyte memb 97.1 0.0003 1E-08 68.8 4.1 28 60-90 17-44 (197)
194 2f9l_A RAB11B, member RAS onco 97.1 0.00038 1.3E-08 65.5 4.6 36 65-100 5-52 (199)
195 1m7g_A Adenylylsulfate kinase; 97.0 0.00016 5.6E-09 69.4 1.7 39 59-100 22-63 (211)
196 2ze6_A Isopentenyl transferase 97.0 0.00039 1.3E-08 69.5 4.3 34 66-100 2-35 (253)
197 3lw7_A Adenylate kinase relate 97.0 0.00029 9.7E-09 63.6 2.9 33 66-100 2-34 (179)
198 1qhx_A CPT, protein (chloramph 97.0 0.00051 1.7E-08 63.4 4.4 33 67-100 5-39 (178)
199 3n10_A Adenylate cyclase 2; CY 97.0 0.0043 1.5E-07 58.9 10.8 121 241-371 41-177 (179)
200 3pih_A Uvrabc system protein A 96.9 4.7E-05 1.6E-09 89.7 -4.1 93 141-245 459-559 (916)
201 1tev_A UMP-CMP kinase; ploop, 96.9 0.00046 1.6E-08 64.0 3.4 35 65-100 3-37 (196)
202 2p5t_B PEZT; postsegregational 96.9 0.00054 1.9E-08 68.0 3.7 36 63-99 30-65 (253)
203 4eaq_A DTMP kinase, thymidylat 96.8 0.00053 1.8E-08 67.6 3.5 41 50-90 11-51 (229)
204 1ex7_A Guanylate kinase; subst 96.8 0.0014 4.7E-08 63.4 6.3 140 67-216 3-150 (186)
205 1ukz_A Uridylate kinase; trans 96.8 0.00067 2.3E-08 64.1 4.0 37 63-100 13-49 (203)
206 2qor_A Guanylate kinase; phosp 96.8 0.00058 2E-08 65.2 3.5 28 60-90 10-37 (204)
207 2r6f_A Excinuclease ABC subuni 96.8 0.00011 3.6E-09 86.9 -2.2 92 141-244 499-598 (972)
208 1ly1_A Polynucleotide kinase; 96.8 0.00074 2.5E-08 61.9 3.8 34 65-99 2-36 (181)
209 3k1j_A LON protease, ATP-depen 96.8 0.00017 5.8E-09 80.8 -0.7 59 39-100 37-97 (604)
210 2p67_A LAO/AO transport system 96.8 6.7E-05 2.3E-09 78.3 -3.9 41 46-89 40-80 (341)
211 1w1w_A Structural maintenance 96.8 0.0008 2.7E-08 72.0 4.4 30 57-89 21-50 (430)
212 2dr3_A UPF0273 protein PH0284; 96.8 0.00094 3.2E-08 64.3 4.4 40 58-100 19-60 (247)
213 3cm0_A Adenylate kinase; ATP-b 96.7 0.00059 2E-08 63.4 2.8 24 66-89 5-28 (186)
214 2c95_A Adenylate kinase 1; tra 96.7 0.00059 2E-08 63.6 2.7 34 66-100 10-43 (196)
215 2bwj_A Adenylate kinase 5; pho 96.7 0.0005 1.7E-08 64.3 2.0 34 66-100 13-46 (199)
216 3m6a_A ATP-dependent protease 96.7 0.00033 1.1E-08 77.8 0.9 50 47-100 94-144 (543)
217 3hr8_A Protein RECA; alpha and 96.7 0.0012 4.2E-08 69.9 5.2 67 59-128 58-130 (356)
218 1via_A Shikimate kinase; struc 96.7 0.00062 2.1E-08 63.1 2.5 32 67-99 6-37 (175)
219 3trf_A Shikimate kinase, SK; a 96.7 0.00074 2.5E-08 62.8 2.9 33 67-100 7-39 (185)
220 1qf9_A UMP/CMP kinase, protein 96.7 0.00078 2.7E-08 62.3 2.9 34 65-99 6-39 (194)
221 1e6c_A Shikimate kinase; phosp 96.6 0.0007 2.4E-08 62.0 2.5 34 66-100 3-36 (173)
222 2v54_A DTMP kinase, thymidylat 96.6 0.0013 4.3E-08 61.9 4.2 33 66-98 5-37 (204)
223 2rhm_A Putative kinase; P-loop 96.6 0.0008 2.7E-08 62.6 2.8 35 65-100 5-39 (193)
224 2px0_A Flagellar biosynthesis 96.6 0.00075 2.6E-08 69.4 2.8 30 61-93 104-134 (296)
225 2ygr_A Uvrabc system protein A 96.6 0.00013 4.6E-09 86.2 -3.3 92 141-244 516-615 (993)
226 2vf7_A UVRA2, excinuclease ABC 96.6 0.00019 6.5E-09 83.9 -2.1 92 141-244 374-473 (842)
227 2yvu_A Probable adenylyl-sulfa 96.6 0.0011 3.8E-08 62.0 3.5 23 67-89 15-37 (186)
228 1nks_A Adenylate kinase; therm 96.6 0.00091 3.1E-08 61.8 2.9 25 65-89 1-25 (194)
229 2o5v_A DNA replication and rep 96.6 0.00057 2E-08 72.4 1.7 36 50-89 15-50 (359)
230 1gvn_B Zeta; postsegregational 96.6 0.0015 5.2E-08 66.5 4.7 36 63-99 31-66 (287)
231 2pbr_A DTMP kinase, thymidylat 96.6 0.0013 4.6E-08 60.9 3.8 32 67-98 2-35 (195)
232 2cdn_A Adenylate kinase; phosp 96.5 0.0012 4E-08 62.6 3.3 38 62-100 17-54 (201)
233 1kht_A Adenylate kinase; phosp 96.5 0.0013 4.4E-08 60.8 3.5 24 66-89 4-27 (192)
234 1zd8_A GTP:AMP phosphotransfer 96.5 0.00099 3.4E-08 64.5 2.8 35 65-100 7-41 (227)
235 2iyv_A Shikimate kinase, SK; t 96.5 0.0008 2.7E-08 62.6 2.0 33 67-100 4-36 (184)
236 2jaq_A Deoxyguanosine kinase; 96.5 0.0011 3.8E-08 61.9 3.0 23 67-89 2-24 (205)
237 1np6_A Molybdopterin-guanine d 96.5 0.002 6.8E-08 61.4 4.7 34 66-99 7-44 (174)
238 1f2t_B RAD50 ABC-ATPase; DNA d 96.5 8.1E-05 2.8E-09 69.4 -4.9 66 141-213 52-123 (148)
239 2z0h_A DTMP kinase, thymidylat 96.5 0.0012 4E-08 61.7 2.9 23 67-89 2-24 (197)
240 3iij_A Coilin-interacting nucl 96.5 0.001 3.5E-08 61.7 2.5 33 67-100 13-45 (180)
241 3tlx_A Adenylate kinase 2; str 96.4 0.0012 4.2E-08 65.2 2.9 36 64-100 28-63 (243)
242 1zuh_A Shikimate kinase; alpha 96.4 0.0013 4.4E-08 60.4 2.9 33 66-99 8-40 (168)
243 1aky_A Adenylate kinase; ATP:A 96.4 0.0011 3.8E-08 63.8 2.5 35 65-100 4-38 (220)
244 1m2o_B GTP-binding protein SAR 96.4 0.002 6.8E-08 60.3 4.2 35 50-88 12-46 (190)
245 2vli_A Antibiotic resistance p 96.4 0.0011 3.9E-08 61.1 2.4 25 65-89 5-29 (183)
246 3dl0_A Adenylate kinase; phosp 96.4 0.0016 5.5E-08 62.2 3.5 33 67-100 2-34 (216)
247 2pt5_A Shikimate kinase, SK; a 96.4 0.0014 4.9E-08 59.7 3.0 33 67-100 2-34 (168)
248 3fb4_A Adenylate kinase; psych 96.4 0.0014 4.6E-08 62.6 2.8 33 67-100 2-34 (216)
249 2plr_A DTMP kinase, probable t 96.4 0.002 6.8E-08 60.5 3.8 24 66-89 5-28 (213)
250 1sxj_C Activator 1 40 kDa subu 96.3 0.00027 9.1E-09 72.9 -2.6 43 46-89 28-70 (340)
251 2www_A Methylmalonic aciduria 96.3 0.0014 4.8E-08 68.7 2.9 34 66-99 75-109 (349)
252 1gtv_A TMK, thymidylate kinase 96.3 0.00073 2.5E-08 64.0 0.6 23 67-89 2-24 (214)
253 2wwf_A Thymidilate kinase, put 96.3 0.0018 6E-08 61.3 3.1 24 66-89 11-34 (212)
254 1xjc_A MOBB protein homolog; s 96.3 0.0028 9.6E-08 60.5 4.4 34 65-98 4-41 (169)
255 1nn5_A Similar to deoxythymidy 96.3 0.0019 6.5E-08 61.0 3.1 24 66-89 10-33 (215)
256 1f2t_A RAD50 ABC-ATPase; DNA d 96.3 0.0017 5.7E-08 59.9 2.6 23 67-89 25-47 (149)
257 3crm_A TRNA delta(2)-isopenten 96.3 0.0038 1.3E-07 65.4 5.6 34 66-100 6-39 (323)
258 2dhr_A FTSH; AAA+ protein, hex 96.1 0.0018 6.3E-08 71.5 2.5 44 51-100 55-98 (499)
259 2ffh_A Protein (FFH); SRP54, s 96.1 0.0022 7.7E-08 69.5 3.1 42 53-99 91-133 (425)
260 1ltq_A Polynucleotide kinase; 96.1 0.0029 1E-07 63.5 3.7 34 66-99 3-36 (301)
261 3cf0_A Transitional endoplasmi 96.1 0.0033 1.1E-07 64.0 4.1 37 59-99 46-82 (301)
262 2wji_A Ferrous iron transport 96.1 0.0031 1E-07 57.5 3.4 24 66-89 4-27 (165)
263 3a4m_A L-seryl-tRNA(SEC) kinas 96.1 0.0043 1.5E-07 61.8 4.7 34 65-98 4-39 (260)
264 3exa_A TRNA delta(2)-isopenten 96.1 0.0049 1.7E-07 64.6 5.2 34 66-100 4-37 (322)
265 1mky_A Probable GTP-binding pr 96.0 0.0087 3E-07 64.3 6.9 26 64-89 179-204 (439)
266 2wjg_A FEOB, ferrous iron tran 96.0 0.0039 1.3E-07 57.2 3.6 24 65-88 7-30 (188)
267 1lv7_A FTSH; alpha/beta domain 96.0 0.0043 1.5E-07 60.9 4.1 32 67-99 47-78 (257)
268 1zak_A Adenylate kinase; ATP:A 96.0 0.0023 7.8E-08 61.6 2.0 25 65-89 5-29 (222)
269 3be4_A Adenylate kinase; malar 95.9 0.003 1E-07 60.9 2.8 35 65-100 5-39 (217)
270 3foz_A TRNA delta(2)-isopenten 95.9 0.0067 2.3E-07 63.5 5.3 35 65-100 10-44 (316)
271 1f6b_A SAR1; gtpases, N-termin 95.9 0.001 3.4E-08 62.9 -0.9 34 50-87 14-47 (198)
272 1j8m_F SRP54, signal recogniti 95.9 0.0018 6E-08 66.7 0.8 41 53-97 89-131 (297)
273 2xb4_A Adenylate kinase; ATP-b 95.8 0.0033 1.1E-07 61.0 2.6 33 67-100 2-34 (223)
274 3ice_A Transcription terminati 95.8 0.0042 1.4E-07 67.1 3.3 49 38-89 135-198 (422)
275 3a8t_A Adenylate isopentenyltr 95.8 0.0075 2.6E-07 63.6 5.2 34 66-100 41-74 (339)
276 1e4v_A Adenylate kinase; trans 95.7 0.0033 1.1E-07 60.2 2.0 33 67-100 2-34 (214)
277 1ak2_A Adenylate kinase isoenz 95.7 0.0047 1.6E-07 60.2 3.1 36 64-100 15-50 (233)
278 2ocp_A DGK, deoxyguanosine kin 95.6 0.009 3.1E-07 58.4 4.5 27 65-91 2-28 (241)
279 2gj8_A MNME, tRNA modification 95.6 0.0063 2.2E-07 56.0 3.2 24 66-89 5-28 (172)
280 3qks_A DNA double-strand break 95.5 0.0052 1.8E-07 59.3 2.6 23 67-89 25-47 (203)
281 2zej_A Dardarin, leucine-rich 95.5 0.0059 2E-07 56.5 2.9 23 66-88 3-25 (184)
282 3umf_A Adenylate kinase; rossm 95.5 0.0049 1.7E-07 60.9 2.3 38 61-99 25-62 (217)
283 1ypw_A Transitional endoplasmi 95.5 0.0067 2.3E-07 70.5 3.8 38 58-99 234-271 (806)
284 3t34_A Dynamin-related protein 95.5 0.0037 1.3E-07 65.1 1.4 33 50-88 25-57 (360)
285 1ega_A Protein (GTP-binding pr 95.4 0.0053 1.8E-07 62.8 2.1 23 67-89 10-32 (301)
286 3eph_A TRNA isopentenyltransfe 95.3 0.0097 3.3E-07 64.3 4.1 34 66-100 3-36 (409)
287 1p5z_B DCK, deoxycytidine kina 95.3 0.0091 3.1E-07 59.2 3.4 33 63-95 22-54 (263)
288 4ad8_A DNA repair protein RECN 95.2 0.0018 6.1E-08 71.2 -2.3 75 145-232 395-472 (517)
289 3bc1_A RAS-related protein RAB 95.1 0.015 5.1E-07 53.0 4.2 28 62-89 8-35 (195)
290 1kao_A RAP2A; GTP-binding prot 95.1 0.014 4.7E-07 51.6 3.8 24 65-88 3-26 (167)
291 3lxx_A GTPase IMAP family memb 95.1 0.012 4.1E-07 57.2 3.7 27 63-89 27-53 (239)
292 3k53_A Ferrous iron transport 95.1 0.01 3.6E-07 59.1 3.3 25 65-89 3-27 (271)
293 2z43_A DNA repair and recombin 95.1 0.019 6.6E-07 59.1 5.3 39 59-100 104-150 (324)
294 2ce2_X GTPase HRAS; signaling 95.1 0.013 4.3E-07 51.7 3.4 24 66-89 4-27 (166)
295 3zvl_A Bifunctional polynucleo 95.1 0.0086 2.9E-07 64.1 2.7 26 64-89 257-282 (416)
296 2ged_A SR-beta, signal recogni 95.1 0.013 4.4E-07 54.0 3.6 26 64-89 47-72 (193)
297 1z2a_A RAS-related protein RAB 95.0 0.015 5E-07 51.8 3.8 26 64-89 4-29 (168)
298 3kl4_A SRP54, signal recogniti 95.0 0.0086 3E-07 65.1 2.6 26 64-89 96-121 (433)
299 2fn4_A P23, RAS-related protei 95.0 0.015 5.1E-07 52.4 3.8 26 63-88 7-32 (181)
300 1u8z_A RAS-related protein RAL 95.0 0.016 5.3E-07 51.3 3.8 25 65-89 4-28 (168)
301 3b9p_A CG5977-PA, isoform A; A 95.0 0.021 7.3E-07 56.9 5.2 31 67-98 56-86 (297)
302 2dyk_A GTP-binding protein; GT 95.0 0.016 5.4E-07 51.3 3.8 24 66-89 2-25 (161)
303 2ohf_A Protein OLA1, GTP-bindi 95.0 0.014 4.8E-07 62.8 4.0 22 67-88 24-45 (396)
304 3sr0_A Adenylate kinase; phosp 95.0 0.0099 3.4E-07 58.0 2.6 32 67-99 2-33 (206)
305 4dsu_A GTPase KRAS, isoform 2B 94.9 0.017 5.7E-07 52.6 3.9 26 64-89 3-28 (189)
306 1ky3_A GTP-binding protein YPT 94.9 0.017 5.6E-07 52.2 3.8 26 64-89 7-32 (182)
307 2qtf_A Protein HFLX, GTP-bindi 94.9 0.019 6.4E-07 60.7 4.7 23 67-89 181-203 (364)
308 3bos_A Putative DNA replicatio 94.9 0.019 6.6E-07 54.3 4.3 23 67-89 54-76 (242)
309 1c1y_A RAS-related protein RAP 94.9 0.017 6E-07 51.2 3.8 24 65-88 3-26 (167)
310 1wms_A RAB-9, RAB9, RAS-relate 94.8 0.018 6.1E-07 52.0 3.8 26 64-89 6-31 (177)
311 1ek0_A Protein (GTP-binding pr 94.8 0.018 6.1E-07 51.2 3.7 25 65-89 3-27 (170)
312 1z0j_A RAB-22, RAS-related pro 94.8 0.018 6.2E-07 51.3 3.8 25 65-89 6-30 (170)
313 1z08_A RAS-related protein RAB 94.8 0.018 6.3E-07 51.4 3.8 26 64-89 5-30 (170)
314 2lkc_A Translation initiation 94.8 0.016 5.5E-07 52.3 3.4 25 65-89 8-32 (178)
315 2erx_A GTP-binding protein DI- 94.8 0.018 6.2E-07 51.3 3.7 24 65-88 3-26 (172)
316 3auy_A DNA double-strand break 94.8 0.014 4.8E-07 61.3 3.4 32 53-88 17-48 (371)
317 2nzj_A GTP-binding protein REM 94.7 0.018 6E-07 51.8 3.5 25 65-89 4-28 (175)
318 2oil_A CATX-8, RAS-related pro 94.7 0.022 7.4E-07 52.6 4.2 27 63-89 23-49 (193)
319 1v5w_A DMC1, meiotic recombina 94.7 0.024 8.2E-07 59.1 4.9 39 59-100 119-165 (343)
320 3clv_A RAB5 protein, putative; 94.7 0.02 7E-07 52.2 3.8 26 64-89 6-31 (208)
321 3con_A GTPase NRAS; structural 94.7 0.02 7E-07 52.6 3.8 28 62-89 18-45 (190)
322 3tw8_B RAS-related protein RAB 94.6 0.017 5.9E-07 52.0 3.2 26 63-88 7-32 (181)
323 4fcw_A Chaperone protein CLPB; 94.6 0.017 5.8E-07 57.7 3.4 32 67-98 49-82 (311)
324 2wsm_A Hydrogenase expression/ 94.6 0.018 6.2E-07 54.6 3.5 25 65-89 30-54 (221)
325 1jbk_A CLPB protein; beta barr 94.6 0.018 6.3E-07 51.9 3.3 23 67-89 45-67 (195)
326 1g16_A RAS-related protein SEC 94.6 0.019 6.5E-07 51.2 3.4 25 65-89 3-27 (170)
327 1r2q_A RAS-related protein RAB 94.6 0.022 7.4E-07 50.6 3.7 24 65-88 6-29 (170)
328 1upt_A ARL1, ADP-ribosylation 94.6 0.022 7.6E-07 50.9 3.8 24 65-88 7-30 (171)
329 4ad8_A DNA repair protein RECN 94.6 0.0047 1.6E-07 67.8 -0.9 35 51-89 50-84 (517)
330 2qby_A CDC6 homolog 1, cell di 94.5 0.015 5.2E-07 59.1 2.9 33 67-99 47-84 (386)
331 1svi_A GTP-binding protein YSX 94.5 0.018 6.3E-07 53.0 3.2 25 64-88 22-46 (195)
332 3q85_A GTP-binding protein REM 94.5 0.021 7.2E-07 51.1 3.4 24 66-89 3-26 (169)
333 2hxs_A RAB-26, RAS-related pro 94.5 0.025 8.4E-07 51.1 3.8 25 64-88 5-29 (178)
334 2w58_A DNAI, primosome compone 94.5 0.021 7.2E-07 53.7 3.5 23 67-89 56-78 (202)
335 2p65_A Hypothetical protein PF 94.4 0.022 7.6E-07 51.5 3.5 23 67-89 45-67 (187)
336 1fnn_A CDC6P, cell division co 94.4 0.025 8.6E-07 57.9 4.2 32 67-98 46-80 (389)
337 1z0f_A RAB14, member RAS oncog 94.4 0.029 9.8E-07 50.4 4.1 27 63-89 13-39 (179)
338 2g6b_A RAS-related protein RAB 94.4 0.029 9.8E-07 50.7 4.2 27 63-89 8-34 (180)
339 3h4m_A Proteasome-activating n 94.4 0.032 1.1E-06 55.2 4.8 30 67-97 53-82 (285)
340 1ko7_A HPR kinase/phosphatase; 94.4 0.047 1.6E-06 57.0 6.1 38 47-88 130-167 (314)
341 2a9k_A RAS-related protein RAL 94.4 0.026 9.1E-07 51.0 3.8 24 65-88 18-41 (187)
342 3pqc_A Probable GTP-binding pr 94.3 0.022 7.5E-07 52.1 3.2 26 64-89 22-47 (195)
343 2y8e_A RAB-protein 6, GH09086P 94.3 0.024 8.3E-07 50.9 3.4 25 64-88 13-37 (179)
344 1njg_A DNA polymerase III subu 94.3 0.025 8.7E-07 52.7 3.5 24 66-89 46-69 (250)
345 3q72_A GTP-binding protein RAD 94.3 0.017 5.9E-07 51.5 2.3 24 66-89 3-26 (166)
346 3p32_A Probable GTPase RV1496/ 94.3 0.036 1.2E-06 57.9 5.0 36 63-98 77-116 (355)
347 3t1o_A Gliding protein MGLA; G 94.3 0.03 1E-06 51.2 3.9 27 63-89 12-38 (198)
348 3tkl_A RAS-related protein RAB 94.2 0.033 1.1E-06 51.2 4.2 27 63-89 14-40 (196)
349 2gf9_A RAS-related protein RAB 94.2 0.031 1.1E-06 51.5 4.0 27 63-89 20-46 (189)
350 1nrj_B SR-beta, signal recogni 94.2 0.027 9.4E-07 53.1 3.6 26 64-89 11-36 (218)
351 2gf0_A GTP-binding protein DI- 94.1 0.031 1.1E-06 51.5 3.7 25 64-88 7-31 (199)
352 4ag6_A VIRB4 ATPase, type IV s 94.1 0.027 9.2E-07 59.1 3.7 23 67-89 37-59 (392)
353 2qz4_A Paraplegin; AAA+, SPG7, 94.1 0.031 1.1E-06 54.2 3.9 23 67-89 41-63 (262)
354 2efe_B Small GTP-binding prote 94.1 0.032 1.1E-06 50.4 3.8 26 64-89 11-36 (181)
355 3kkq_A RAS-related protein M-R 94.1 0.037 1.3E-06 50.4 4.2 27 63-89 16-42 (183)
356 2bov_A RAla, RAS-related prote 94.1 0.032 1.1E-06 51.7 3.8 25 64-88 13-37 (206)
357 2cxx_A Probable GTP-binding pr 94.1 0.022 7.4E-07 52.0 2.5 23 66-88 2-24 (190)
358 1vg8_A RAS-related protein RAB 94.1 0.033 1.1E-06 51.7 3.8 26 64-89 7-32 (207)
359 2bme_A RAB4A, RAS-related prot 94.1 0.029 9.9E-07 51.1 3.4 26 64-89 9-34 (186)
360 2xtp_A GTPase IMAP family memb 94.0 0.027 9.2E-07 55.3 3.3 27 62-88 19-45 (260)
361 1fzq_A ADP-ribosylation factor 94.0 0.022 7.6E-07 52.6 2.6 26 64-89 15-40 (181)
362 1m8p_A Sulfate adenylyltransfe 94.0 0.019 6.5E-07 64.3 2.5 38 62-99 393-433 (573)
363 2qmh_A HPR kinase/phosphorylas 94.0 0.048 1.6E-06 53.8 4.9 30 67-98 36-65 (205)
364 1mh1_A RAC1; GTP-binding, GTPa 94.0 0.035 1.2E-06 50.3 3.7 24 65-88 5-28 (186)
365 1moz_A ARL1, ADP-ribosylation 94.0 0.017 5.8E-07 52.5 1.6 25 63-87 16-40 (183)
366 2hf9_A Probable hydrogenase ni 93.9 0.031 1E-06 53.2 3.4 25 65-89 38-62 (226)
367 2a5j_A RAS-related protein RAB 93.9 0.04 1.4E-06 51.0 4.1 27 63-89 19-45 (191)
368 3fdi_A Uncharacterized protein 93.9 0.029 1E-06 54.1 3.3 24 66-89 7-30 (201)
369 3dm5_A SRP54, signal recogniti 93.9 0.043 1.5E-06 59.8 4.9 49 316-375 292-341 (443)
370 4edh_A DTMP kinase, thymidylat 93.9 0.029 1E-06 54.8 3.3 24 66-89 7-30 (213)
371 3t15_A Ribulose bisphosphate c 93.9 0.024 8.3E-07 57.5 2.7 34 64-98 35-68 (293)
372 3gmt_A Adenylate kinase; ssgci 93.9 0.018 6.1E-07 57.6 1.7 32 67-99 10-41 (230)
373 3ihw_A Centg3; RAS, centaurin, 93.9 0.038 1.3E-06 51.3 3.8 25 64-88 19-43 (184)
374 2p5s_A RAS and EF-hand domain 93.9 0.037 1.3E-06 51.6 3.8 28 62-89 25-52 (199)
375 1r8s_A ADP-ribosylation factor 93.9 0.035 1.2E-06 49.3 3.4 23 67-89 2-24 (164)
376 1z06_A RAS-related protein RAB 93.9 0.039 1.3E-06 50.9 3.8 26 64-89 19-44 (189)
377 3t5g_A GTP-binding protein RHE 93.9 0.033 1.1E-06 50.6 3.4 24 64-87 5-28 (181)
378 1ksh_A ARF-like protein 2; sma 93.8 0.033 1.1E-06 51.0 3.3 25 64-88 17-41 (186)
379 3b1v_A Ferrous iron uptake tra 93.8 0.032 1.1E-06 56.4 3.5 24 65-88 3-26 (272)
380 3ld9_A DTMP kinase, thymidylat 93.8 0.032 1.1E-06 55.2 3.4 26 64-89 20-45 (223)
381 2r6a_A DNAB helicase, replicat 93.8 0.019 6.6E-07 61.9 1.9 36 51-89 192-227 (454)
382 3reg_A RHO-like small GTPase; 93.8 0.04 1.4E-06 50.9 3.8 29 61-89 19-47 (194)
383 2fg5_A RAB-22B, RAS-related pr 93.8 0.035 1.2E-06 51.5 3.4 26 64-89 22-47 (192)
384 1x3s_A RAS-related protein RAB 93.8 0.04 1.4E-06 50.4 3.7 25 65-89 15-39 (195)
385 1x6v_B Bifunctional 3'-phospho 93.7 0.042 1.4E-06 62.4 4.5 37 64-100 51-89 (630)
386 1m7b_A RND3/RHOE small GTP-bin 93.7 0.037 1.3E-06 50.8 3.4 26 64-89 6-31 (184)
387 3bwd_D RAC-like GTP-binding pr 93.7 0.039 1.3E-06 49.9 3.5 25 65-89 8-32 (182)
388 3lv8_A DTMP kinase, thymidylat 93.7 0.027 9.3E-07 56.2 2.6 24 66-89 28-51 (236)
389 3lxw_A GTPase IMAP family memb 93.6 0.04 1.4E-06 54.4 3.6 27 63-89 19-45 (247)
390 2aca_A Putative adenylate cycl 93.6 0.083 2.9E-06 50.7 5.7 121 241-371 43-179 (189)
391 3oes_A GTPase rhebl1; small GT 93.6 0.04 1.4E-06 51.5 3.4 26 64-89 23-48 (201)
392 1zd9_A ADP-ribosylation factor 93.5 0.046 1.6E-06 50.5 3.7 25 65-89 22-46 (188)
393 2il1_A RAB12; G-protein, GDP, 93.5 0.039 1.3E-06 51.3 3.3 26 63-88 24-49 (192)
394 2zts_A Putative uncharacterize 93.5 0.051 1.7E-06 52.0 4.1 25 59-86 27-51 (251)
395 1xwi_A SKD1 protein; VPS4B, AA 93.5 0.054 1.9E-06 55.7 4.6 33 67-99 47-79 (322)
396 1zbd_A Rabphilin-3A; G protein 93.5 0.044 1.5E-06 50.9 3.6 25 65-89 8-32 (203)
397 4bas_A ADP-ribosylation factor 93.5 0.037 1.3E-06 50.9 3.0 27 63-89 15-41 (199)
398 1zj6_A ADP-ribosylation factor 93.5 0.041 1.4E-06 50.6 3.3 25 64-88 15-39 (187)
399 2atv_A RERG, RAS-like estrogen 93.5 0.05 1.7E-06 50.5 3.8 25 64-88 27-51 (196)
400 1l8q_A Chromosomal replication 93.4 0.038 1.3E-06 56.1 3.2 23 67-89 39-61 (324)
401 3cbq_A GTP-binding protein REM 93.4 0.031 1.1E-06 52.5 2.4 26 62-87 20-45 (195)
402 2h17_A ADP-ribosylation factor 93.4 0.036 1.2E-06 50.8 2.7 26 64-89 20-45 (181)
403 2chg_A Replication factor C sm 93.4 0.043 1.5E-06 50.7 3.3 23 67-89 40-62 (226)
404 3n70_A Transport activator; si 93.4 0.044 1.5E-06 49.4 3.3 23 67-89 26-48 (145)
405 3cph_A RAS-related protein SEC 93.4 0.05 1.7E-06 50.8 3.7 24 65-88 20-43 (213)
406 3tqf_A HPR(Ser) kinase; transf 93.4 0.048 1.6E-06 52.8 3.6 33 51-87 6-38 (181)
407 2e87_A Hypothetical protein PH 93.4 0.032 1.1E-06 58.1 2.7 25 65-89 167-191 (357)
408 3c5c_A RAS-like protein 12; GD 93.4 0.052 1.8E-06 50.3 3.8 26 63-88 19-44 (187)
409 2f7s_A C25KG, RAS-related prot 93.3 0.053 1.8E-06 51.1 3.9 27 63-89 23-49 (217)
410 1u94_A RECA protein, recombina 93.3 0.059 2E-06 56.8 4.6 39 59-100 60-100 (356)
411 1jal_A YCHF protein; nucleotid 93.3 0.059 2E-06 57.2 4.6 22 67-88 4-25 (363)
412 2fh5_B SR-beta, signal recogni 93.3 0.046 1.6E-06 51.4 3.4 25 65-89 7-31 (214)
413 3dz8_A RAS-related protein RAB 93.3 0.046 1.6E-06 50.5 3.4 26 64-89 22-47 (191)
414 2iwr_A Centaurin gamma 1; ANK 93.3 0.042 1.4E-06 49.8 3.0 24 65-88 7-30 (178)
415 3hws_A ATP-dependent CLP prote 93.3 0.056 1.9E-06 56.0 4.3 31 67-98 53-83 (363)
416 2ew1_A RAS-related protein RAB 93.3 0.052 1.8E-06 51.5 3.8 27 63-89 24-50 (201)
417 2bcg_Y Protein YP2, GTP-bindin 93.3 0.047 1.6E-06 51.0 3.4 27 63-89 6-32 (206)
418 2qu8_A Putative nucleolar GTP- 93.2 0.046 1.6E-06 52.4 3.3 26 63-88 27-52 (228)
419 1dek_A Deoxynucleoside monopho 93.2 0.053 1.8E-06 54.4 3.8 25 65-89 1-25 (241)
420 4dhe_A Probable GTP-binding pr 93.2 0.026 9E-07 53.3 1.5 25 64-88 28-52 (223)
421 3v9p_A DTMP kinase, thymidylat 93.2 0.036 1.2E-06 54.9 2.6 23 67-89 27-49 (227)
422 3i8s_A Ferrous iron transport 93.2 0.046 1.6E-06 54.9 3.3 25 65-89 3-27 (274)
423 3iby_A Ferrous iron transport 93.1 0.041 1.4E-06 54.9 2.9 24 66-89 2-25 (256)
424 2h57_A ADP-ribosylation factor 93.1 0.034 1.2E-06 51.3 2.1 25 64-88 20-44 (190)
425 2o52_A RAS-related protein RAB 93.1 0.046 1.6E-06 51.2 3.0 26 63-88 23-48 (200)
426 3a1s_A Iron(II) transport prot 93.1 0.053 1.8E-06 54.1 3.6 25 65-89 5-29 (258)
427 3llu_A RAS-related GTP-binding 93.1 0.043 1.5E-06 51.1 2.8 29 61-89 16-44 (196)
428 1ofh_A ATP-dependent HSL prote 93.1 0.054 1.8E-06 53.7 3.6 31 67-98 52-82 (310)
429 2cjw_A GTP-binding protein GEM 93.0 0.064 2.2E-06 50.2 3.9 24 65-88 6-29 (192)
430 3llm_A ATP-dependent RNA helic 93.0 0.041 1.4E-06 53.5 2.6 58 59-128 73-131 (235)
431 2q3h_A RAS homolog gene family 92.9 0.057 1.9E-06 50.1 3.4 25 64-88 19-43 (201)
432 2r62_A Cell division protease 92.9 0.027 9.2E-07 55.3 1.2 22 68-89 47-68 (268)
433 3tmk_A Thymidylate kinase; pho 92.9 0.069 2.4E-06 52.5 4.1 24 67-90 7-30 (216)
434 4tmk_A Protein (thymidylate ki 92.9 0.049 1.7E-06 53.3 3.0 23 67-89 5-27 (213)
435 3syl_A Protein CBBX; photosynt 92.9 0.045 1.5E-06 54.7 2.8 23 67-89 69-91 (309)
436 2dby_A GTP-binding protein; GD 92.9 0.042 1.4E-06 58.3 2.6 23 66-88 2-24 (368)
437 2dy1_A Elongation factor G; tr 92.8 0.039 1.3E-06 62.7 2.5 35 58-95 5-42 (665)
438 2fv8_A H6, RHO-related GTP-bin 92.8 0.06 2E-06 50.6 3.4 25 65-89 25-49 (207)
439 2qag_A Septin-2, protein NEDD5 92.8 0.039 1.3E-06 58.0 2.3 23 67-89 39-61 (361)
440 2j1l_A RHO-related GTP-binding 92.8 0.055 1.9E-06 51.4 3.1 25 64-88 33-57 (214)
441 2fu5_C RAS-related protein RAB 92.8 0.041 1.4E-06 50.1 2.1 25 64-88 7-31 (183)
442 2atx_A Small GTP binding prote 92.7 0.063 2.2E-06 49.5 3.4 25 64-88 17-41 (194)
443 3hdt_A Putative kinase; struct 92.7 0.051 1.8E-06 53.6 2.9 25 65-89 14-38 (223)
444 3pfi_A Holliday junction ATP-d 92.7 0.074 2.5E-06 54.0 4.2 31 67-98 57-87 (338)
445 2ius_A DNA translocase FTSK; n 92.7 0.051 1.7E-06 60.3 3.2 31 54-87 159-189 (512)
446 1d2n_A N-ethylmaleimide-sensit 92.7 0.068 2.3E-06 52.8 3.8 25 65-89 64-88 (272)
447 2hup_A RAS-related protein RAB 92.7 0.07 2.4E-06 50.1 3.7 27 63-89 27-53 (201)
448 3iev_A GTP-binding protein ERA 92.7 0.068 2.3E-06 54.6 3.8 25 65-89 10-34 (308)
449 1c9k_A COBU, adenosylcobinamid 92.7 0.056 1.9E-06 52.0 3.0 29 68-98 2-30 (180)
450 1gwn_A RHO-related GTP-binding 92.7 0.065 2.2E-06 50.9 3.4 26 64-89 27-52 (205)
451 1sxj_D Activator 1 41 kDa subu 92.6 0.058 2E-06 54.6 3.3 38 51-89 45-82 (353)
452 2v1u_A Cell division control p 92.6 0.054 1.8E-06 55.1 3.0 23 67-89 46-68 (387)
453 1wf3_A GTP-binding protein; GT 92.6 0.066 2.2E-06 54.8 3.6 24 66-89 8-31 (301)
454 2ce7_A Cell division protein F 92.6 0.058 2E-06 59.2 3.3 22 68-89 52-73 (476)
455 2b6h_A ADP-ribosylation factor 92.6 0.052 1.8E-06 50.6 2.6 26 63-88 27-52 (192)
456 3bh0_A DNAB-like replicative h 92.5 0.07 2.4E-06 54.8 3.7 35 52-89 58-92 (315)
457 3def_A T7I23.11 protein; chlor 92.5 0.064 2.2E-06 53.2 3.3 26 64-89 35-60 (262)
458 4hlc_A DTMP kinase, thymidylat 92.5 0.084 2.9E-06 51.2 4.1 23 67-89 4-26 (205)
459 2i1q_A DNA repair and recombin 92.5 0.063 2.2E-06 54.8 3.3 27 59-88 95-121 (322)
460 2gco_A H9, RHO-related GTP-bin 92.5 0.07 2.4E-06 49.9 3.4 25 65-89 25-49 (201)
461 3d8b_A Fidgetin-like protein 1 92.5 0.086 3E-06 54.9 4.4 31 67-98 119-149 (357)
462 1h65_A Chloroplast outer envel 92.5 0.067 2.3E-06 53.2 3.4 28 62-89 36-63 (270)
463 4b4t_K 26S protease regulatory 92.4 0.085 2.9E-06 57.2 4.4 32 67-99 208-239 (428)
464 1um8_A ATP-dependent CLP prote 92.4 0.086 3E-06 54.8 4.3 31 67-98 74-104 (376)
465 1ypw_A Transitional endoplasmi 92.4 0.021 7.3E-07 66.3 -0.4 39 56-98 505-543 (806)
466 3eie_A Vacuolar protein sortin 92.4 0.075 2.6E-06 54.3 3.7 31 67-98 53-83 (322)
467 1jwy_B Dynamin A GTPase domain 92.4 0.06 2.1E-06 54.1 2.9 24 66-89 25-48 (315)
468 2z4s_A Chromosomal replication 92.3 0.063 2.2E-06 57.8 3.2 23 67-89 132-154 (440)
469 4gzl_A RAS-related C3 botulinu 92.3 0.076 2.6E-06 50.0 3.4 25 64-88 29-53 (204)
470 4b4t_J 26S protease regulatory 92.3 0.1 3.5E-06 56.2 4.7 31 68-99 185-215 (405)
471 3t5d_A Septin-7; GTP-binding p 92.3 0.058 2E-06 53.9 2.6 24 65-88 8-31 (274)
472 2zan_A Vacuolar protein sortin 92.3 0.11 3.8E-06 55.9 5.0 33 67-99 169-201 (444)
473 1yrb_A ATP(GTP)binding protein 92.2 0.095 3.2E-06 51.0 4.0 29 61-89 10-38 (262)
474 3io5_A Recombination and repai 92.2 0.13 4.4E-06 54.1 5.2 127 67-213 30-172 (333)
475 1g41_A Heat shock protein HSLU 92.1 0.093 3.2E-06 57.2 4.2 31 68-99 53-83 (444)
476 3hjn_A DTMP kinase, thymidylat 92.1 0.1 3.6E-06 50.1 4.1 23 67-89 2-24 (197)
477 2yc2_C IFT27, small RAB-relate 92.0 0.039 1.3E-06 51.0 1.0 24 65-88 20-43 (208)
478 4b4t_M 26S protease regulatory 92.0 0.1 3.5E-06 56.7 4.4 32 67-99 217-248 (434)
479 3cpj_B GTP-binding protein YPT 92.0 0.1 3.4E-06 49.8 3.8 27 63-89 11-37 (223)
480 2j37_W Signal recognition part 92.0 0.13 4.4E-06 56.9 5.2 38 63-100 99-140 (504)
481 2bjv_A PSP operon transcriptio 91.9 0.12 4E-06 50.8 4.4 23 67-89 31-53 (265)
482 2j0v_A RAC-like GTP-binding pr 91.9 0.092 3.1E-06 49.2 3.4 24 65-88 9-32 (212)
483 2axn_A 6-phosphofructo-2-kinas 91.8 0.077 2.6E-06 58.6 3.2 36 65-100 35-74 (520)
484 2v3c_C SRP54, signal recogniti 91.8 0.049 1.7E-06 59.0 1.5 25 65-89 99-123 (432)
485 2x77_A ADP-ribosylation factor 91.8 0.053 1.8E-06 49.8 1.6 24 64-87 21-44 (189)
486 4djt_A GTP-binding nuclear pro 91.8 0.043 1.5E-06 51.7 1.0 25 64-88 10-34 (218)
487 4b4t_L 26S protease subunit RP 91.8 0.12 3.9E-06 56.3 4.4 32 67-99 217-248 (437)
488 2qp9_X Vacuolar protein sortin 91.7 0.098 3.3E-06 54.6 3.7 31 67-98 86-116 (355)
489 2gks_A Bifunctional SAT/APS ki 91.7 0.097 3.3E-06 58.3 3.9 35 65-99 372-408 (546)
490 1bif_A 6-phosphofructo-2-kinas 91.7 0.099 3.4E-06 56.6 3.8 26 64-89 38-63 (469)
491 3uk6_A RUVB-like 2; hexameric 91.7 0.1 3.6E-06 53.4 3.8 23 67-89 72-94 (368)
492 2qby_B CDC6 homolog 3, cell di 91.6 0.098 3.3E-06 53.6 3.5 25 65-89 45-69 (384)
493 2aka_B Dynamin-1; fusion prote 91.6 0.08 2.8E-06 52.6 2.8 25 65-89 26-50 (299)
494 1g8f_A Sulfate adenylyltransfe 91.5 0.079 2.7E-06 58.7 2.9 24 66-89 396-419 (511)
495 2o5v_A DNA replication and rep 91.5 0.0067 2.3E-07 64.2 -5.4 80 146-243 265-353 (359)
496 3vfd_A Spastin; ATPase, microt 91.5 0.15 5.3E-06 53.3 5.0 32 67-99 150-181 (389)
497 3q3j_B RHO-related GTP-binding 91.4 0.12 4.2E-06 49.1 3.7 25 64-88 26-50 (214)
498 1e2k_A Thymidine kinase; trans 91.4 0.11 3.8E-06 54.5 3.7 33 65-97 4-36 (331)
499 3u61_B DNA polymerase accessor 91.3 0.13 4.3E-06 52.1 3.9 39 59-98 42-80 (324)
500 1sxj_A Activator 1 95 kDa subu 91.2 0.16 5.5E-06 55.6 5.0 33 66-99 78-110 (516)
No 1
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.96 E-value=1.7e-30 Score=275.93 Aligned_cols=202 Identities=15% Similarity=0.114 Sum_probs=171.5
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc---------cccc
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND---------SSRV 106 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~---------~~R~ 106 (621)
...+++++.||.+.+|++|||++++|+ +++|+||||||||||+++|+|++ |+.|.|.++|... .++.
T Consensus 5 l~i~~ls~~y~~~~~L~~vsl~i~~Ge---~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ 81 (359)
T 3fvq_A 5 LHIGHLSKSFQNTPVLNDISLSLDPGE---ILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERR 81 (359)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTC---EEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSC
T ss_pred EEEEeEEEEECCEEEEEeeEEEEcCCC---EEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCC
Confidence 456789999999999999999999999 99999999999999999999999 9999999999632 2367
Q ss_pred ccccCCCCcccccchHHHHHHHHhcCCC----------------ccCc-cccccccCccCCceeecCCccEEEEecceec
Q 038045 107 VDGNFDDPRLTDYDTLLENVRDLREGKP----------------VQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYAL 169 (621)
Q Consensus 107 Ig~vfQdp~l~d~~tV~enL~~L~~gk~----------------V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLL 169 (621)
+||+||++.+|+++|+.+|+.+...... +.+. ..+..+.++|||++|+++++|+++.+|.++|
T Consensus 82 ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLL 161 (359)
T 3fvq_A 82 LGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELIL 161 (359)
T ss_dssp CEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999999999999999999998542211 1111 2455678999999999999999999999999
Q ss_pred cccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEEecCC
Q 038045 170 SEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIYLLPP 249 (621)
Q Consensus 170 lDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIYi~P~ 249 (621)
+|||+++||+.. ..++...+.+..++.|.|+++|+|+++++. .++|++.+|.+|.+.+.+++.++|-.|.
T Consensus 162 LDEPts~LD~~~------r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~----~~aDri~vl~~G~i~~~g~~~el~~~p~ 231 (359)
T 3fvq_A 162 LDEPFSALDEQL------RRQIREDMIAALRANGKSAVFVSHDREEAL----QYADRIAVMKQGRILQTASPHELYRQPA 231 (359)
T ss_dssp EESTTTTSCHHH------HHHHHHHHHHHHHHTTCEEEEECCCHHHHH----HHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred EeCCcccCCHHH------HHHHHHHHHHHHHhCCCEEEEEeCCHHHHH----HHCCEEEEEECCEEEEEeCHHHHHhCcc
Confidence 999999999742 223444566666778999999999999998 8899999999999999999999987666
Q ss_pred CC
Q 038045 250 GE 251 (621)
Q Consensus 250 ~~ 251 (621)
..
T Consensus 232 ~~ 233 (359)
T 3fvq_A 232 DL 233 (359)
T ss_dssp CH
T ss_pred cH
Confidence 54
No 2
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.96 E-value=1.9e-30 Score=277.44 Aligned_cols=203 Identities=17% Similarity=0.179 Sum_probs=171.0
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcc-----ccccccccc
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYN-----DSSRVVDGN 110 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~-----~~~R~Ig~v 110 (621)
...+++++.||.+.+|++|||++++|+ +++|+||||||||||+++|+|++ |+.|.|.++|.. ..++.++|+
T Consensus 4 l~~~~l~~~yg~~~~L~~vsl~i~~Ge---~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~V 80 (381)
T 3rlf_A 4 VQLQNVTKAWGEVVVSKDINLDIHEGE---FVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMV 80 (381)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTC---EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEE
T ss_pred EEEEeEEEEECCEEEEeeeEEEECCCC---EEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEE
Confidence 346789999999999999999999999 99999999999999999999999 999999999973 234679999
Q ss_pred CCCCcccccchHHHHHHHHhcCC----------------CccCc-cccccccCccCCceeecCCccEEEEecceeccccc
Q 038045 111 FDDPRLTDYDTLLENVRDLREGK----------------PVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKL 173 (621)
Q Consensus 111 fQdp~l~d~~tV~enL~~L~~gk----------------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp 173 (621)
||++.+|+++|+.+|+.+..... .+.+. ..+..+.++||||+|+++++|+++.+|.++|+|||
T Consensus 81 fQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEP 160 (381)
T 3rlf_A 81 FQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEP 160 (381)
T ss_dssp CTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEEST
T ss_pred ecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 99999999999999998743211 11122 24556789999999999999999999999999999
Q ss_pred cCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEEecCCCCC
Q 038045 174 RPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIYLLPPGED 252 (621)
Q Consensus 174 ~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIYi~P~~~~ 252 (621)
++.||+.. ...+...+.+..++.|.|+++|+|+++++. .++|++.+|.+|.+.+.+++.++|-.|.+.+
T Consensus 161 ts~LD~~~------~~~l~~~l~~l~~~~g~tii~vTHd~~ea~----~~aDri~vl~~G~i~~~g~~~~l~~~p~~~~ 229 (381)
T 3rlf_A 161 LSNLDAAL------RVQMRIEISRLHKRLGRTMIYVTHDQVEAM----TLADKIVVLDAGRVAQVGKPLELYHYPADRF 229 (381)
T ss_dssp TTTSCHHH------HHHHHHHHHHHHHHHCCEEEEECSCHHHHH----HHCSEEEEEETTEEEEEECHHHHHHCCSBHH
T ss_pred CcCCCHHH------HHHHHHHHHHHHHhCCCEEEEEECCHHHHH----HhCCEEEEEECCEEEEEeCHHHHHhCCccHH
Confidence 99999742 223444444444566999999999999998 8899999999999999999999987776543
No 3
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.96 E-value=1.6e-29 Score=268.47 Aligned_cols=202 Identities=17% Similarity=0.186 Sum_probs=167.7
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcc-----ccccccccc
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYN-----DSSRVVDGN 110 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~-----~~~R~Ig~v 110 (621)
...+++++.||.+.+|+++||++++|+ +++|+||||||||||+++|+|++ |+.|.|.++|.. ..++.++|+
T Consensus 4 l~~~~l~~~y~~~~vl~~vsl~i~~Ge---~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v 80 (359)
T 2yyz_A 4 IRVVNLKKYFGKVKAVDGVSFEVKDGE---FVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMV 80 (359)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTC---EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEE
T ss_pred EEEEEEEEEECCEEEEeeeEEEEcCCC---EEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEE
Confidence 346788999999999999999999999 99999999999999999999999 899999999963 234679999
Q ss_pred CCCCcccccchHHHHHHHHhcCCC----------------ccCc-cccccccCccCCceeecCCccEEEEecceeccccc
Q 038045 111 FDDPRLTDYDTLLENVRDLREGKP----------------VQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKL 173 (621)
Q Consensus 111 fQdp~l~d~~tV~enL~~L~~gk~----------------V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp 173 (621)
||++.+|+++|+.+|+.+...... +.+. ..+..+.++|||++|+++.+|+++.+|.++|+|||
T Consensus 81 ~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP 160 (359)
T 2yyz_A 81 FQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEP 160 (359)
T ss_dssp CSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred ecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 999999999999999998542110 1121 23455788999999999999999999999999999
Q ss_pred cCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEEecCCCC
Q 038045 174 RPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIYLLPPGE 251 (621)
Q Consensus 174 ~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIYi~P~~~ 251 (621)
++.||+.. ...+...+.+..++.|.|++.++|+++++. ..+|++.+|++|.+.+.+++.++|-.|.+.
T Consensus 161 ~s~LD~~~------r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~----~~adri~vl~~G~i~~~g~~~~l~~~p~~~ 228 (359)
T 2yyz_A 161 LSNLDANL------RMIMRAEIKHLQQELGITSVYVTHDQAEAM----TMASRIAVFNQGKLVQYGTPDEVYDSPKNM 228 (359)
T ss_dssp TTTSCHHH------HHHHHHHHHHHHHHHCCEEEEEESCHHHHH----HHCSEEEEEETTEEEEEECHHHHHHSCSBH
T ss_pred cccCCHHH------HHHHHHHHHHHHHhcCCEEEEEcCCHHHHH----HhCCEEEEEECCEEEEeCCHHHHHhCcccH
Confidence 99999742 223333344444556999999999999987 788999999999999999999987666543
No 4
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.95 E-value=7.4e-30 Score=271.68 Aligned_cols=251 Identities=18% Similarity=0.179 Sum_probs=191.4
Q ss_pred eeecceeeeeC----cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc---------
Q 038045 37 PIQDPLSFEKG----FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND--------- 102 (621)
Q Consensus 37 ~v~~~lsf~~G----~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~--------- 102 (621)
...+++++.|+ ...+|++|||++++|+ ++||+||||||||||+++|+|++ |+.|.|.++|...
T Consensus 25 i~v~~ls~~y~~~~~~~~aL~~vsl~i~~Ge---i~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~ 101 (366)
T 3tui_C 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQ---IYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELT 101 (366)
T ss_dssp EEEEEEEEEEECSSSEEEEEEEEEEEECTTC---EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHH
T ss_pred EEEEeEEEEeCCCCCCeEEEEeeEEEEcCCC---EEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHH
Confidence 44667877764 3679999999999999 99999999999999999999999 9999999999732
Q ss_pred -ccccccccCCCCcccccchHHHHHHHHhc--CC--------------CccCc-cccccccCccCCceeecCCccEEEEe
Q 038045 103 -SSRVVDGNFDDPRLTDYDTLLENVRDLRE--GK--------------PVQVP-IYDFESSSRTGYRTVEVPSSRIVIIE 164 (621)
Q Consensus 103 -~~R~Ig~vfQdp~l~d~~tV~enL~~L~~--gk--------------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvE 164 (621)
.++.+||+||++.+++.+|+.+|+.+... +. .+.+. ..+..+.++|||++|++++||+++.+
T Consensus 102 ~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~ 181 (366)
T 3tui_C 102 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASN 181 (366)
T ss_dssp HHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTC
T ss_pred HHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 13579999999999999999999987432 10 11122 23455789999999999999999999
Q ss_pred cceeccccccCCCCeeEEecCCchHHHHHHHHHHH-HHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCcee
Q 038045 165 GIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDI-QRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYD 243 (621)
Q Consensus 165 G~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl-~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aD 243 (621)
|.++|+|||++.||+. ....+..+.+.+ ++.|.|++.|+|+++.+. .+||++.+|.+|.+...+...+
T Consensus 182 P~lLLlDEPTs~LD~~-------~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~----~~aDrv~vl~~G~iv~~g~~~e 250 (366)
T 3tui_C 182 PKVLLCDQATSALDPA-------TTRSILELLKDINRRLGLTILLITHEMDVVK----RICDCVAVISNGELIEQDTVSE 250 (366)
T ss_dssp CSEEEEESTTTTSCHH-------HHHHHHHHHHHHHHHSCCEEEEEESCHHHHH----HHCSEEEEEETTEEEECCBHHH
T ss_pred CCEEEEECCCccCCHH-------HHHHHHHHHHHHHHhCCCEEEEEecCHHHHH----HhCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999973 234444444544 456999999999999987 7899999999999999888888
Q ss_pred EEecCCCCCcccc---------c----ceeEEee---cCCeeEEEeeeeecCCCeEeccceeeEEEeeeeccee
Q 038045 244 IYLLPPGEDPESC---------Q----SYLRMRN---KDGKYSLMFEEWVTDIPFVISPRITFEVSVRLLGGLM 301 (621)
Q Consensus 244 IYi~P~~~~~e~~---------~----d~Irvr~---~~g~~~L~f~e~i~d~~fIi~P~~~FeV~~~~LgGll 301 (621)
++-.|........ . ..+.... ....+.+.|.+.....+++..-...|.+.+++++|-+
T Consensus 251 v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~il~g~~ 324 (366)
T 3tui_C 251 VFSHPKTPLAQKFIQSTLHLDIPEDYQERLQAEPFTDCVPMLRLEFTGQSVDAPLLSETARRFNVNNNIISAQM 324 (366)
T ss_dssp HHSSCCSHHHHHHHHHHTTCCCCHHHHHHCBSSCCTTCCEEEEEEEEHHHHSSCHHHHHHHHHTCEEEEEEEEE
T ss_pred HHhCCCcHHHHHHHhhcccccCchhhhhhhccccccCCCceEEEEecCcccchhHHHHHHHHcCCCeEEEEeeE
Confidence 8655543211100 0 0010000 1124566666666677877777678999999998853
No 5
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.95 E-value=4e-29 Score=266.50 Aligned_cols=202 Identities=16% Similarity=0.160 Sum_probs=167.2
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcc-----------ccc
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYN-----------DSS 104 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~-----------~~~ 104 (621)
...+++++.||.+.+|+++||++++|+ +++|+||||||||||+++|+|++ |+.|.|.++|.. ..+
T Consensus 4 l~~~~l~~~y~~~~vl~~vsl~i~~Ge---~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~ 80 (372)
T 1g29_1 4 VRLVDVWKVFGEVTAVREMSLEVKDGE---FMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKD 80 (372)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTC---EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGG
T ss_pred EEEEeEEEEECCEEEEeeeEEEEcCCC---EEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhH
Confidence 346788999999999999999999999 99999999999999999999999 899999999853 123
Q ss_pred ccccccCCCCcccccchHHHHHHHHhc--CC--------------CccCc-cccccccCccCCceeecCCccEEEEecce
Q 038045 105 RVVDGNFDDPRLTDYDTLLENVRDLRE--GK--------------PVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIY 167 (621)
Q Consensus 105 R~Ig~vfQdp~l~d~~tV~enL~~L~~--gk--------------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~l 167 (621)
+.++|+||++.+|+++|+.+|+.+... +. .+.+. ..+..+.++|||++|+++.+++++.+|.+
T Consensus 81 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~l 160 (372)
T 1g29_1 81 RDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQV 160 (372)
T ss_dssp SSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSE
T ss_pred CCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 679999999999999999999988431 10 01121 23455788999999999999999999999
Q ss_pred eccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEEec
Q 038045 168 ALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIYLL 247 (621)
Q Consensus 168 LLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIYi~ 247 (621)
+|+|||++.||+.. ...+...+.+..++.|.|++.++|+++++. .++|++.+|++|.+.+.+++.++|-.
T Consensus 161 LLLDEP~s~LD~~~------r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~----~~adri~vl~~G~i~~~g~~~~l~~~ 230 (372)
T 1g29_1 161 FLMDEPLSNLDAKL------RVRMRAELKKLQRQLGVTTIYVTHDQVEAM----TMGDRIAVMNRGVLQQVGSPDEVYDK 230 (372)
T ss_dssp EEEECTTTTSCHHH------HHHHHHHHHHHHHHHTCEEEEEESCHHHHH----HHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred EEECCCCccCCHHH------HHHHHHHHHHHHHhcCCEEEEECCCHHHHH----HhCCEEEEEeCCEEEEeCCHHHHHhC
Confidence 99999999999742 223333344444556999999999999987 78899999999999999999998766
Q ss_pred CCCC
Q 038045 248 PPGE 251 (621)
Q Consensus 248 P~~~ 251 (621)
|.+.
T Consensus 231 p~~~ 234 (372)
T 1g29_1 231 PANT 234 (372)
T ss_dssp CSBH
T ss_pred cccH
Confidence 6554
No 6
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.95 E-value=4.8e-29 Score=265.96 Aligned_cols=202 Identities=18% Similarity=0.218 Sum_probs=161.7
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcc-----ccccccccc
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYN-----DSSRVVDGN 110 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~-----~~~R~Ig~v 110 (621)
...+++++.||.+.+|+++||++++|+ +++|+||||||||||+++|+|++ |+.|.|.++|.. ..++.++|+
T Consensus 12 l~~~~l~~~y~~~~vl~~vsl~i~~Ge---~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v 88 (372)
T 1v43_A 12 VKLENLTKRFGNFTAVNKLNLTIKDGE---FLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMV 88 (372)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTC---EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEE
T ss_pred EEEEEEEEEECCEEEEeeeEEEECCCC---EEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEE
Confidence 456789999999999999999999999 99999999999999999999999 899999999963 234679999
Q ss_pred CCCCcccccchHHHHHHHHhcCC----------------CccCc-cccccccCccCCceeecCCccEEEEecceeccccc
Q 038045 111 FDDPRLTDYDTLLENVRDLREGK----------------PVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKL 173 (621)
Q Consensus 111 fQdp~l~d~~tV~enL~~L~~gk----------------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp 173 (621)
||++.+|+++|+.+|+.+..... .+.+. ..+..+.++|||++|+++++++++.+|.++|+|||
T Consensus 89 ~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP 168 (372)
T 1v43_A 89 FQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEP 168 (372)
T ss_dssp EC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEEST
T ss_pred ecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 99999999999999998743211 01121 23455789999999999999999999999999999
Q ss_pred cCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEEecCCCC
Q 038045 174 RPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIYLLPPGE 251 (621)
Q Consensus 174 ~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIYi~P~~~ 251 (621)
++.||+.. ...+...+.+..++.|.|++.++|+++++. .++|++.+|.+|.+.+.+++.++|-.|...
T Consensus 169 ~s~LD~~~------r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~----~~adri~vl~~G~i~~~g~~~~l~~~p~~~ 236 (372)
T 1v43_A 169 LSNLDAKL------RVAMRAEIKKLQQKLKVTTIYVTHDQVEAM----TMGDRIAVMNRGQLLQIGSPTEVYLRPNSV 236 (372)
T ss_dssp TTTSCHHH------HHHHHHHHHHHHHHHTCEEEEEESCHHHHH----HHCSEEEEEETTEEEEEECHHHHHHCCSBH
T ss_pred CccCCHHH------HHHHHHHHHHHHHhCCCEEEEEeCCHHHHH----HhCCEEEEEECCEEEEeCCHHHHHhCcccH
Confidence 99999742 223333444444456999999999999987 788999999999999999999987666554
No 7
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.95 E-value=4.3e-29 Score=265.49 Aligned_cols=202 Identities=18% Similarity=0.213 Sum_probs=167.1
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcc-----ccccccccc
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYN-----DSSRVVDGN 110 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~-----~~~R~Ig~v 110 (621)
...+++++.||.+.+|+++||++++|+ +++|+||||||||||+++|+|++ |+.|.|.++|.. ..++.++|+
T Consensus 4 l~~~~l~~~y~~~~vl~~vsl~i~~Ge---~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v 80 (362)
T 2it1_A 4 IKLENIVKKFGNFTALNNINLKIKDGE---FMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLV 80 (362)
T ss_dssp EEEEEEEEESSSSEEEEEEEEEECTTC---EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEE
T ss_pred EEEEeEEEEECCEEEEEeeEEEECCCC---EEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEE
Confidence 346788999998899999999999999 99999999999999999999999 899999999863 234679999
Q ss_pred CCCCcccccchHHHHHHHHhc--CC--------------CccCc-cccccccCccCCceeecCCccEEEEecceeccccc
Q 038045 111 FDDPRLTDYDTLLENVRDLRE--GK--------------PVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKL 173 (621)
Q Consensus 111 fQdp~l~d~~tV~enL~~L~~--gk--------------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp 173 (621)
||++.+|+++|+.+|+.+... +. .+.+. ..+..+.++|||++|+++.+|+++.+|.++|+|||
T Consensus 81 ~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP 160 (362)
T 2it1_A 81 FQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEP 160 (362)
T ss_dssp CTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESG
T ss_pred ecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECc
Confidence 999999999999999987431 10 11122 23455788999999999999999999999999999
Q ss_pred cCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEEecCCCC
Q 038045 174 RPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIYLLPPGE 251 (621)
Q Consensus 174 ~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIYi~P~~~ 251 (621)
++.||+.. ...+...+.+..++.|.|++.++|+++++. .++|++.+|++|.+.+.+++.++|-.|...
T Consensus 161 ~s~LD~~~------r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~----~~adri~vl~~G~i~~~g~~~~~~~~p~~~ 228 (362)
T 2it1_A 161 LSNLDALL------RLEVRAELKRLQKELGITTVYVTHDQAEAL----AMADRIAVIREGEILQVGTPDEVYYKPKYK 228 (362)
T ss_dssp GGGSCHHH------HHHHHHHHHHHHHHHTCEEEEEESCHHHHH----HHCSEEEEEETTEEEEEECHHHHHHSCSBH
T ss_pred cccCCHHH------HHHHHHHHHHHHHhCCCEEEEECCCHHHHH----HhCCEEEEEECCEEEEEcCHHHHHhCccch
Confidence 99999742 223333444444456999999999999987 788999999999999999999987666543
No 8
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.95 E-value=5.5e-29 Score=263.71 Aligned_cols=202 Identities=18% Similarity=0.165 Sum_probs=166.8
Q ss_pred eeecceeeeeCcEE--EEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcc----------cc
Q 038045 37 PIQDPLSFEKGFFV--VIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYN----------DS 103 (621)
Q Consensus 37 ~v~~~lsf~~G~~~--~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~----------~~ 103 (621)
...+++++.||.+. +|+++||++++|+ +++|+||||||||||+++|+|++ |+.|.|.++|.. ..
T Consensus 4 l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge---~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~ 80 (353)
T 1oxx_K 4 IIVKNVSKVFKKGKVVALDNVNINIENGE---RFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80 (353)
T ss_dssp EEEEEEEEEEGGGTEEEEEEEEEEECTTC---EEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGG
T ss_pred EEEEeEEEEECCEeeeeEeceEEEECCCC---EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChh
Confidence 34667888888777 9999999999999 99999999999999999999999 899999999853 12
Q ss_pred cccccccCCCCcccccchHHHHHHHHhcCCC----------------ccCc-cccccccCccCCceeecCCccEEEEecc
Q 038045 104 SRVVDGNFDDPRLTDYDTLLENVRDLREGKP----------------VQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGI 166 (621)
Q Consensus 104 ~R~Ig~vfQdp~l~d~~tV~enL~~L~~gk~----------------V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~ 166 (621)
++.++|+||++.+|+++|+.+|+.+...... +.+. ..+..+.++|||++|+++.+++++.+|.
T Consensus 81 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~ 160 (353)
T 1oxx_K 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPS 160 (353)
T ss_dssp GSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred hCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCC
Confidence 4679999999999999999999998542211 1111 2345578899999999999999999999
Q ss_pred eeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEEe
Q 038045 167 YALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIYL 246 (621)
Q Consensus 167 lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIYi 246 (621)
++|+|||++.||+.. ...+...+.+..++.|.|++.++|+++++. .++|++.+|++|.+.+.+++.++|-
T Consensus 161 lLLLDEP~s~LD~~~------r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~----~~adri~vl~~G~i~~~g~~~~l~~ 230 (353)
T 1oxx_K 161 LLLLDEPFSNLDARM------RDSARALVKEVQSRLGVTLLVVSHDPADIF----AIADRVGVLVKGKLVQVGKPEDLYD 230 (353)
T ss_dssp EEEEESTTTTSCGGG------HHHHHHHHHHHHHHHCCEEEEEESCHHHHH----HHCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHH----HhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999842 223444444444556999999999999987 7889999999999999999999876
Q ss_pred cCCCC
Q 038045 247 LPPGE 251 (621)
Q Consensus 247 ~P~~~ 251 (621)
.|...
T Consensus 231 ~p~~~ 235 (353)
T 1oxx_K 231 NPVSI 235 (353)
T ss_dssp SCSSH
T ss_pred CcccH
Confidence 66544
No 9
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.95 E-value=4.6e-29 Score=264.62 Aligned_cols=202 Identities=18% Similarity=0.145 Sum_probs=166.7
Q ss_pred eeecceeeee-CcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcc-----cccccccc
Q 038045 37 PIQDPLSFEK-GFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYN-----DSSRVVDG 109 (621)
Q Consensus 37 ~v~~~lsf~~-G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~-----~~~R~Ig~ 109 (621)
...+++++.| |.+.+|+++||++++|+ +++|+||||||||||+++|+|++ |+.|.|.++|.. ..++.++|
T Consensus 15 l~~~~l~~~y~g~~~vl~~vsl~i~~Ge---~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 91 (355)
T 1z47_A 15 IEFVGVEKIYPGGARSVRGVSFQIREGE---MVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGL 91 (355)
T ss_dssp EEEEEEEECCTTSTTCEEEEEEEEETTC---EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEE
T ss_pred EEEEEEEEEEcCCCEEEeeeEEEECCCC---EEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEE
Confidence 4567888888 87789999999999999 99999999999999999999999 899999999963 23467999
Q ss_pred cCCCCcccccchHHHHHHHHhc--CC--------------CccCc-cccccccCccCCceeecCCccEEEEecceecccc
Q 038045 110 NFDDPRLTDYDTLLENVRDLRE--GK--------------PVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEK 172 (621)
Q Consensus 110 vfQdp~l~d~~tV~enL~~L~~--gk--------------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDE 172 (621)
+||++.+|+++|+.+|+.+... +. .+.+. ..+..+.++||||+|+++++++++.+|.++|+||
T Consensus 92 v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDE 171 (355)
T 1z47_A 92 VFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDE 171 (355)
T ss_dssp ECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred EecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 9999999999999999987431 10 11122 2345678899999999999999999999999999
Q ss_pred ccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEEecCCCC
Q 038045 173 LRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIYLLPPGE 251 (621)
Q Consensus 173 p~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIYi~P~~~ 251 (621)
|++.||+.. ...+...+.+..++.|.|++.++|+++++. .++|++.+|.+|.+.+.+++.++|-.|...
T Consensus 172 P~s~LD~~~------r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~----~~adri~vl~~G~i~~~g~~~~l~~~p~~~ 240 (355)
T 1z47_A 172 PFAAIDTQI------RRELRTFVRQVHDEMGVTSVFVTHDQEEAL----EVADRVLVLHEGNVEQFGTPEEVYEKPGTL 240 (355)
T ss_dssp TTCCSSHHH------HHHHHHHHHHHHHHHTCEEEEECSCHHHHH----HHCSEEEEEETTEEEEEECHHHHHHSCSSH
T ss_pred CcccCCHHH------HHHHHHHHHHHHHhcCCEEEEECCCHHHHH----HhCCEEEEEECCEEEEEcCHHHHHhCccch
Confidence 999999742 223333344444456999999999999988 788999999999999999999987666554
No 10
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.95 E-value=8.6e-29 Score=261.86 Aligned_cols=201 Identities=17% Similarity=0.171 Sum_probs=166.4
Q ss_pred eecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-----ccccccccC
Q 038045 38 IQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-----SSRVVDGNF 111 (621)
Q Consensus 38 v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-----~~R~Ig~vf 111 (621)
..+++++.||.+ +|+++||++++|+ +++|+||||||||||+++|+|++ |+.|.|.++|... .++.++|+|
T Consensus 3 ~~~~l~~~y~~~-~l~~vsl~i~~Ge---~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~ 78 (348)
T 3d31_A 3 EIESLSRKWKNF-SLDNLSLKVESGE---YFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVY 78 (348)
T ss_dssp EEEEEEEECSSC-EEEEEEEEECTTC---EEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEEC
T ss_pred EEEEEEEEECCE-EEeeeEEEEcCCC---EEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEe
Confidence 456788888888 9999999999999 99999999999999999999999 9999999999632 246799999
Q ss_pred CCCcccccchHHHHHHHHhc--C--C---------CccCc-cccccccCccCCceeecCCccEEEEecceeccccccCCC
Q 038045 112 DDPRLTDYDTLLENVRDLRE--G--K---------PVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLL 177 (621)
Q Consensus 112 Qdp~l~d~~tV~enL~~L~~--g--k---------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~L 177 (621)
|++.+|+++|+.+|+.+... + + .+.+. ..+..+.++||||+|+++.+|+++.+|.++|+|||++.|
T Consensus 79 Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~L 158 (348)
T 3d31_A 79 QNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSAL 158 (348)
T ss_dssp TTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTS
T ss_pred cCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccC
Confidence 99999999999999987431 1 1 11121 234567899999999999999999999999999999999
Q ss_pred CeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEEecCCCCC
Q 038045 178 DLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIYLLPPGED 252 (621)
Q Consensus 178 DlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIYi~P~~~~ 252 (621)
|+.. ...+...+.+..++.|.|++.++|+++++. .++|++.+|.+|.+.+.+++.++|-.|...+
T Consensus 159 D~~~------~~~l~~~l~~l~~~~g~tii~vTHd~~~~~----~~adri~vl~~G~i~~~g~~~~~~~~p~~~~ 223 (348)
T 3d31_A 159 DPRT------QENAREMLSVLHKKNKLTVLHITHDQTEAR----IMADRIAVVMDGKLIQVGKPEEIFEKPVEGR 223 (348)
T ss_dssp CHHH------HHHHHHHHHHHHHHTTCEEEEEESCHHHHH----HHCSEEEEESSSCEEEEECHHHHHSSCCTTH
T ss_pred CHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHH----HhCCEEEEEECCEEEEECCHHHHHhCcccHH
Confidence 9742 223333344434556999999999999987 7889999999999999999999987776654
No 11
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.93 E-value=2.5e-27 Score=240.64 Aligned_cols=194 Identities=21% Similarity=0.191 Sum_probs=160.1
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc------------
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS------------ 103 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~------------ 103 (621)
...+++++.||...+|++|||++++|+ ++||+||||||||||+++|+|++ |+.|.|.++|....
T Consensus 7 l~i~~l~~~y~~~~vl~~vsl~i~~Ge---~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 83 (262)
T 1b0u_A 7 LHVIDLHKRYGGHEVLKGVSLQARAGD---VISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 83 (262)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTC---EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred EEEeeEEEEECCEEEEEeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccccccccccc
Confidence 457789999999999999999999999 99999999999999999999999 89999999986321
Q ss_pred --------cccccccCCCCcccccchHHHHHHHHh---cCC--------------CccCcc--ccccccCccCCceeecC
Q 038045 104 --------SRVVDGNFDDPRLTDYDTLLENVRDLR---EGK--------------PVQVPI--YDFESSSRTGYRTVEVP 156 (621)
Q Consensus 104 --------~R~Ig~vfQdp~l~d~~tV~enL~~L~---~gk--------------~V~~p~--yd~~~~~rsggq~qrVa 156 (621)
++.++|+||++.+|+.+|+.+|+.+.. .+. .+.+.. .+..+.++|+|++|+++
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~ 163 (262)
T 1b0u_A 84 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVS 163 (262)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHH
T ss_pred ChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHH
Confidence 235899999999999999999998732 110 112222 35567889999999999
Q ss_pred CccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCcee
Q 038045 157 SSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTE 236 (621)
Q Consensus 157 ~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie 236 (621)
.+++++.+|.++++|||++.||+. ....+..+.+.+.+.|.|++.++|+++.+. ..+|++.++.+|.+.
T Consensus 164 lAraL~~~p~lllLDEPts~LD~~-------~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~----~~~d~v~~l~~G~i~ 232 (262)
T 1b0u_A 164 IARALAMEPDVLLFDEPTSALDPE-------LVGEVLRIMQQLAEEGKTMVVVTHEMGFAR----HVSSHVIFLHQGKIE 232 (262)
T ss_dssp HHHHHHTCCSEEEEESTTTTSCHH-------HHHHHHHHHHHHHHTTCCEEEECSCHHHHH----HHCSEEEEEETTEEE
T ss_pred HHHHHhcCCCEEEEeCCCccCCHH-------HHHHHHHHHHHHHhCCCEEEEEeCCHHHHH----HhCCEEEEEECCEEE
Confidence 999999999999999999999973 234555555555556999999999998886 678888889999887
Q ss_pred eccCceeE
Q 038045 237 TMEQTYDI 244 (621)
Q Consensus 237 ~~~~~aDI 244 (621)
..+++.++
T Consensus 233 ~~g~~~~~ 240 (262)
T 1b0u_A 233 EEGDPEQV 240 (262)
T ss_dssp EEECHHHH
T ss_pred EeCCHHHH
Confidence 76666665
No 12
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.93 E-value=2.9e-27 Score=236.48 Aligned_cols=190 Identities=16% Similarity=0.195 Sum_probs=150.3
Q ss_pred ecceeeeeC----cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc----------
Q 038045 39 QDPLSFEKG----FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS---------- 103 (621)
Q Consensus 39 ~~~lsf~~G----~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~---------- 103 (621)
.++++|.|+ ...+|+++||++++|+ ++||+||||||||||+++|+|++ |+.|.|.++|....
T Consensus 4 ~~~l~~~y~~~~~~~~~L~~isl~i~~Ge---~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 4 LKNVTKTYKMGEEIIYALKNVNLNIKEGE---FVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEEECTTC---EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred EEEEEEEeCCCCcceeeEEeeeEEEcCCC---EEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 567777765 2579999999999999 99999999999999999999999 99999999996321
Q ss_pred -cccccccCCCCcccccchHHHHHHHHhcC----C---------------CccCcc-c-cccccCccCCceeecCCccEE
Q 038045 104 -SRVVDGNFDDPRLTDYDTLLENVRDLREG----K---------------PVQVPI-Y-DFESSSRTGYRTVEVPSSRIV 161 (621)
Q Consensus 104 -~R~Ig~vfQdp~l~d~~tV~enL~~L~~g----k---------------~V~~p~-y-d~~~~~rsggq~qrVa~ArVL 161 (621)
++.++|+||++.+++.+|+.+|+.+.... . .+.+.. + +..+.++|+|++|+++.|+++
T Consensus 81 ~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral 160 (235)
T 3tif_A 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARAL 160 (235)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHH
T ss_pred hhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 13599999999999999999999863210 0 111221 2 556788999999999999999
Q ss_pred EEecceeccccccCCCCeeEEecCCchHHHHHHHHHHH-HHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccC
Q 038045 162 IIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDI-QRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQ 240 (621)
Q Consensus 162 IvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl-~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~ 240 (621)
+.+|.++++|||++.||+. ....+..+.+.+ ++.|.|++.++|+++. . ..+|++.++.+|.+...+.
T Consensus 161 ~~~p~llllDEPts~LD~~-------~~~~i~~~l~~l~~~~g~tvi~vtHd~~~-~----~~~d~i~~l~~G~i~~~~~ 228 (235)
T 3tif_A 161 ANNPPIILADQPTWALDSK-------TGEKIMQLLKKLNEEDGKTVVVVTHDINV-A----RFGERIIYLKDGEVEREEK 228 (235)
T ss_dssp TTCCSEEEEESTTTTSCHH-------HHHHHHHHHHHHHHHHCCEEEEECSCHHH-H----TTSSEEEEEETTEEEEEEE
T ss_pred HcCCCEEEEeCCcccCCHH-------HHHHHHHHHHHHHHHcCCEEEEEcCCHHH-H----HhCCEEEEEECCEEEEEcC
Confidence 9999999999999999973 233444444444 4459999999999974 4 4688889999998876554
Q ss_pred cee
Q 038045 241 TYD 243 (621)
Q Consensus 241 ~aD 243 (621)
..+
T Consensus 229 ~~~ 231 (235)
T 3tif_A 229 LRG 231 (235)
T ss_dssp CC-
T ss_pred hhh
Confidence 443
No 13
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.93 E-value=3.6e-27 Score=240.26 Aligned_cols=194 Identities=18% Similarity=0.141 Sum_probs=159.1
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc---------ccc
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS---------SRV 106 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~---------~R~ 106 (621)
...+++++.||...+|++|||++++|+ ++||+||||||||||+++|+|++ |+.|.|.++|.... ++.
T Consensus 25 l~i~~l~~~y~~~~vL~~vsl~i~~Ge---i~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~ 101 (263)
T 2olj_A 25 IDVHQLKKSFGSLEVLKGINVHIREGE---VVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREE 101 (263)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTC---EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHH
T ss_pred EEEEeEEEEECCEEEEEeeEEEEcCCC---EEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCc
Confidence 557889999998999999999999999 99999999999999999999999 89999999996421 245
Q ss_pred ccccCCCCcccccchHHHHHHHHh---cCC--------------CccCc-cccccccCccCCceeecCCccEEEEeccee
Q 038045 107 VDGNFDDPRLTDYDTLLENVRDLR---EGK--------------PVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYA 168 (621)
Q Consensus 107 Ig~vfQdp~l~d~~tV~enL~~L~---~gk--------------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lL 168 (621)
++|+||++.+++.+|+.+|+.+.. .+. .+.+. ..+....++|+|++|+++.+++++.+|.++
T Consensus 102 i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~ll 181 (263)
T 2olj_A 102 VGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIM 181 (263)
T ss_dssp EEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEE
Confidence 899999999999999999998732 110 01111 234456789999999999999999999999
Q ss_pred ccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 169 LSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 169 LlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
++|||++.||+. ....+..+.+.+.+.|.|++.++|+++.+. ..+|++.++.+|.+...+.+.++
T Consensus 182 lLDEPts~LD~~-------~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~----~~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
T 2olj_A 182 LFDEPTSALDPE-------MVGEVLSVMKQLANEGMTMVVVTHEMGFAR----EVGDRVLFMDGGYIIEEGKPEDL 246 (263)
T ss_dssp EEESTTTTSCHH-------HHHHHHHHHHHHHHTTCEEEEECSCHHHHH----HHCSEEEEEETTEEEEEECHHHH
T ss_pred EEeCCcccCCHH-------HHHHHHHHHHHHHhCCCEEEEEcCCHHHHH----HhCCEEEEEECCEEEEECCHHHH
Confidence 999999999973 234455555555556999999999998886 67888888999988766666665
No 14
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.93 E-value=1.2e-26 Score=230.33 Aligned_cols=187 Identities=16% Similarity=0.126 Sum_probs=150.4
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc-----------c
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS-----------S 104 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~-----------~ 104 (621)
...+++++.||...+|+++||++++|+ ++||+||||||||||+++|+|++ |+.|.|.++|.... .
T Consensus 5 l~~~~l~~~y~~~~~l~~vsl~i~~Ge---~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 81 (224)
T 2pcj_A 5 LRAENIKKVIRGYEILKGISLSVKKGE---FVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRN 81 (224)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTC---EEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHH
T ss_pred EEEEeEEEEECCEeeEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHh
Confidence 456789999998899999999999999 99999999999999999999999 89999999986321 1
Q ss_pred ccccccCCCCcccccchHHHHHHHHhc--CC--------------CccCc-cccccccCccCCceeecCCccEEEEecce
Q 038045 105 RVVDGNFDDPRLTDYDTLLENVRDLRE--GK--------------PVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIY 167 (621)
Q Consensus 105 R~Ig~vfQdp~l~d~~tV~enL~~L~~--gk--------------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~l 167 (621)
+.++|+||++.+++.+|+.+|+.+... +. .+.+. ..+....++|+|++|+++.+++++.+|.+
T Consensus 82 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~l 161 (224)
T 2pcj_A 82 RKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPIL 161 (224)
T ss_dssp HHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSE
T ss_pred CcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 468999999999999999999986321 10 01111 23455678999999999999999999999
Q ss_pred eccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeec
Q 038045 168 ALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETM 238 (621)
Q Consensus 168 LLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~ 238 (621)
+++|||++.||+. ....+.++.+.+.+.|.|++.++|+++.+ ..+|++.++.+|.+...
T Consensus 162 llLDEPt~~LD~~-------~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-----~~~d~v~~l~~G~i~~~ 220 (224)
T 2pcj_A 162 LFADEPTGNLDSA-------NTKRVMDIFLKINEGGTSIVMVTHERELA-----ELTHRTLEMKDGKVVGE 220 (224)
T ss_dssp EEEESTTTTCCHH-------HHHHHHHHHHHHHHTTCEEEEECSCHHHH-----TTSSEEEEEETTEEEEE
T ss_pred EEEeCCCCCCCHH-------HHHHHHHHHHHHHHCCCEEEEEcCCHHHH-----HhCCEEEEEECCEEEEE
Confidence 9999999999973 23444555555555599999999998764 35677777887766543
No 15
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.93 E-value=3.7e-27 Score=241.68 Aligned_cols=194 Identities=13% Similarity=0.130 Sum_probs=157.3
Q ss_pred eeecceeeeeCc-EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc---------ccc
Q 038045 37 PIQDPLSFEKGF-FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND---------SSR 105 (621)
Q Consensus 37 ~v~~~lsf~~G~-~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~---------~~R 105 (621)
...++++|.|+. ..+|++|||++++|+ ++||+||||||||||+++|+|++ |+.|.|.++|... .++
T Consensus 8 l~i~~ls~~y~~~~~~L~~isl~i~~Ge---~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 8 LKVEELNYNYSDGTHALKGINMNIKRGE---VTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEEETTS---EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred EEEEEEEEEECCCCeEEEeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 457789999864 569999999999999 99999999999999999999999 8999999999743 124
Q ss_pred cccccCCCCc-ccccchHHHHHHHHhcCCC----------------ccCc-cccccccCccCCceeecCCccEEEEecce
Q 038045 106 VVDGNFDDPR-LTDYDTLLENVRDLREGKP----------------VQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIY 167 (621)
Q Consensus 106 ~Ig~vfQdp~-l~d~~tV~enL~~L~~gk~----------------V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~l 167 (621)
.++|+||+|. .+...|+.+|+.+...... +.+. ..+..+.++|||++|++++|++++.+|.+
T Consensus 85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~l 164 (275)
T 3gfo_A 85 SIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKV 164 (275)
T ss_dssp SEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred cEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 6999999984 4447899999987542211 1111 23455688999999999999999999999
Q ss_pred eccccccCCCCeeEEecCCchHHHHHHHHHHHH-HcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 168 ALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQ-RVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 168 LLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~-erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
+++|||++.||+. ....+.++.+.+. +.|.|++.++|+++.+. .++|++.++.+|.+...+++.++
T Consensus 165 LlLDEPts~LD~~-------~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~----~~~drv~~l~~G~i~~~g~~~~~ 231 (275)
T 3gfo_A 165 LILDEPTAGLDPM-------GVSEIMKLLVEMQKELGITIIIATHDIDIVP----LYCDNVFVMKEGRVILQGNPKEV 231 (275)
T ss_dssp EEEECTTTTCCHH-------HHHHHHHHHHHHHHHHCCEEEEEESCCSSGG----GGCSEEEEEETTEEEEEECHHHH
T ss_pred EEEECccccCCHH-------HHHHHHHHHHHHHhhCCCEEEEEecCHHHHH----HhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999973 2344455555554 55999999999998776 78899999999999887777776
No 16
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.93 E-value=7e-27 Score=238.20 Aligned_cols=194 Identities=14% Similarity=0.149 Sum_probs=159.3
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc-------ccccc
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS-------SRVVD 108 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~-------~R~Ig 108 (621)
...+++++.++...+|++|||++++|+ ++||+||||||||||+++|+|++ |+.|.|.++|.... .+.++
T Consensus 12 l~~~~l~~~~~~~~vL~~vsl~i~~Ge---~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~ 88 (266)
T 4g1u_C 12 LEASHLHYHVQQQALINDVSLHIASGE---MVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRA 88 (266)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTC---EEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEE
T ss_pred EEEEeEEEEeCCeeEEEeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEE
Confidence 456789999999999999999999999 99999999999999999999999 89999999997421 24589
Q ss_pred ccCCCCcccccchHHHHHHHHhcCC--------------CccCc-cccccccCccCCceeecCCccEEEE------ecce
Q 038045 109 GNFDDPRLTDYDTLLENVRDLREGK--------------PVQVP-IYDFESSSRTGYRTVEVPSSRIVII------EGIY 167 (621)
Q Consensus 109 ~vfQdp~l~d~~tV~enL~~L~~gk--------------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIv------EG~l 167 (621)
|+||++.+++..|+.+|+.+..... .+.+. ..+....++|||++|++.++++++. +|.+
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~l 168 (266)
T 4g1u_C 89 VMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRW 168 (266)
T ss_dssp EECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEE
T ss_pred EEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCE
Confidence 9999999888899999998754211 01111 2344567899999999999999999 9999
Q ss_pred eccccccCCCCeeEEecCCchHHHHHHHHHHHH-HcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 168 ALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQ-RVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 168 LLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~-erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
+++|||++.||+. ....+.++.+.+. +.|.|++.++|+++.+. ..+|++.++++|.+...+...++
T Consensus 169 LllDEPts~LD~~-------~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~----~~~d~v~vl~~G~i~~~g~~~~~ 235 (266)
T 4g1u_C 169 LFLDEPTSALDLY-------HQQHTLRLLRQLTRQEPLAVCCVLHDLNLAA----LYADRIMLLAQGKLVACGTPEEV 235 (266)
T ss_dssp EEECCCCSSCCHH-------HHHHHHHHHHHHHHHSSEEEEEECSCHHHHH----HHCSEEEEEETTEEEEEECHHHH
T ss_pred EEEeCccccCCHH-------HHHHHHHHHHHHHHcCCCEEEEEEcCHHHHH----HhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999973 2334444444444 44679999999999987 77899999999999887777776
No 17
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.93 E-value=1.3e-26 Score=232.14 Aligned_cols=194 Identities=15% Similarity=0.089 Sum_probs=156.6
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc--------cccc
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS--------SRVV 107 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~--------~R~I 107 (621)
...+++++.|+...+|+++||++++|+ ++||+||||||||||+++|+|++ |+.|.|.++|.... ++.+
T Consensus 7 l~~~~l~~~y~~~~vl~~vsl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 83 (240)
T 1ji0_A 7 LEVQSLHVYYGAIHAIKGIDLKVPRGQ---IVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI 83 (240)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTC---EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred EEEEeEEEEECCeeEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCE
Confidence 457789999998899999999999999 99999999999999999999999 89999999996321 2359
Q ss_pred cccCCCCcccccchHHHHHHHHhc-C--C-C-----------c-cCc-cccccccCccCCceeecCCccEEEEecceecc
Q 038045 108 DGNFDDPRLTDYDTLLENVRDLRE-G--K-P-----------V-QVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYALS 170 (621)
Q Consensus 108 g~vfQdp~l~d~~tV~enL~~L~~-g--k-~-----------V-~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLl 170 (621)
+|+||++.+|+.+|+.+|+.+... . . . + .+. ..+....++|+|++|+++.+++++.+|.++++
T Consensus 84 ~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllL 163 (240)
T 1ji0_A 84 ALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMM 163 (240)
T ss_dssp EEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999999999999999987431 1 0 0 0 011 12344678999999999999999999999999
Q ss_pred ccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 171 EKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 171 DEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
|||++.||+. ....+.++.+.+.+.|.|++.++|+++.+. ..+|++.++.+|.+...+...++
T Consensus 164 DEPts~LD~~-------~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~----~~~d~v~~l~~G~i~~~g~~~~~ 226 (240)
T 1ji0_A 164 DEPSLGLAPI-------LVSEVFEVIQKINQEGTTILLVEQNALGAL----KVAHYGYVLETGQIVLEGKASEL 226 (240)
T ss_dssp ECTTTTCCHH-------HHHHHHHHHHHHHHTTCCEEEEESCHHHHH----HHCSEEEEEETTEEEEEEEHHHH
T ss_pred cCCcccCCHH-------HHHHHHHHHHHHHHCCCEEEEEecCHHHHH----HhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999973 234455555555557999999999998876 67788888888887665554444
No 18
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.93 E-value=1.4e-26 Score=234.17 Aligned_cols=193 Identities=14% Similarity=0.124 Sum_probs=156.0
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc--------cccc
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS--------SRVV 107 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~--------~R~I 107 (621)
...+++++.||...+|+++||++++|+ ++||+||||||||||+++|+|++ |+.|.|.++|.... ++.+
T Consensus 8 l~i~~l~~~y~~~~vl~~vsl~i~~Ge---~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 84 (257)
T 1g6h_A 8 LRTENIVKYFGEFKALDGVSISVNKGD---VTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 84 (257)
T ss_dssp EEEEEEEEEETTEEEEEEECCEEETTC---EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred EEEeeeEEEECCEeeEeeeEEEEeCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 457789999999999999999999999 99999999999999999999999 89999999996321 2368
Q ss_pred cccCCCCcccccchHHHHHHHHhcC--CC---------------------------ccCc-cccccccCccCCceeecCC
Q 038045 108 DGNFDDPRLTDYDTLLENVRDLREG--KP---------------------------VQVP-IYDFESSSRTGYRTVEVPS 157 (621)
Q Consensus 108 g~vfQdp~l~d~~tV~enL~~L~~g--k~---------------------------V~~p-~yd~~~~~rsggq~qrVa~ 157 (621)
+|+||++.+++.+|+.+|+.+.... .. +.+. ..+....++|+|++|+++.
T Consensus 85 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~i 164 (257)
T 1g6h_A 85 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEI 164 (257)
T ss_dssp EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHH
T ss_pred EEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHH
Confidence 9999999999999999999874321 00 0111 1234467899999999999
Q ss_pred ccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceee
Q 038045 158 SRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTET 237 (621)
Q Consensus 158 ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~ 237 (621)
+++++.+|.++++|||++.||+. ..+.+..+.+.+.+.|.|++.++|+++.+. ..+|++.++.+|.+..
T Consensus 165 AraL~~~p~lllLDEPts~LD~~-------~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~----~~~d~v~~l~~G~i~~ 233 (257)
T 1g6h_A 165 GRALMTNPKMIVMDEPIAGVAPG-------LAHDIFNHVLELKAKGITFLIIEHRLDIVL----NYIDHLYVMFNGQIIA 233 (257)
T ss_dssp HHHHHTCCSEEEEESTTTTCCHH-------HHHHHHHHHHHHHHTTCEEEEECSCCSTTG----GGCSEEEEEETTEEEE
T ss_pred HHHHHcCCCEEEEeCCccCCCHH-------HHHHHHHHHHHHHHCCCEEEEEecCHHHHH----HhCCEEEEEECCEEEE
Confidence 99999999999999999999973 234455555555556999999999987766 6788888888887765
Q ss_pred ccCcee
Q 038045 238 MEQTYD 243 (621)
Q Consensus 238 ~~~~aD 243 (621)
.+...+
T Consensus 234 ~g~~~~ 239 (257)
T 1g6h_A 234 EGRGEE 239 (257)
T ss_dssp EEESHH
T ss_pred EeCHHH
Confidence 554444
No 19
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.93 E-value=1.4e-26 Score=234.85 Aligned_cols=193 Identities=15% Similarity=0.152 Sum_probs=158.0
Q ss_pred eecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc------cccccccc
Q 038045 38 IQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND------SSRVVDGN 110 (621)
Q Consensus 38 v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~------~~R~Ig~v 110 (621)
..+++++.||...+|+++||++++|+ ++||+||||||||||+++|+|++ |+.|.|.++|... .++.++|+
T Consensus 17 ~i~~l~~~y~~~~vl~~vsl~i~~Ge---i~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v 93 (256)
T 1vpl_A 17 VVKDLRKRIGKKEILKGISFEIEEGE---IFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYL 93 (256)
T ss_dssp EEEEEEEEETTEEEEEEEEEEECTTC---EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEE
T ss_pred EEEEEEEEECCEEEEEeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEE
Confidence 46789999999999999999999999 99999999999999999999999 8999999999642 13469999
Q ss_pred CCCCcccccchHHHHHHHHhc--CC--------------CccCc-cccccccCccCCceeecCCccEEEEecceeccccc
Q 038045 111 FDDPRLTDYDTLLENVRDLRE--GK--------------PVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKL 173 (621)
Q Consensus 111 fQdp~l~d~~tV~enL~~L~~--gk--------------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp 173 (621)
||++.+++.+|+.+|+.+... +. .+.+. ..+.....+|+|++|++..+++++.+|.++++|||
T Consensus 94 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEP 173 (256)
T 1vpl_A 94 PEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEP 173 (256)
T ss_dssp CTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred cCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 999999999999999987421 10 01111 23445678999999999999999999999999999
Q ss_pred cCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 174 RPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 174 ~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
++.||+. ....+.++.+.+.+.|.|++.++|+++.+. .++|++.++.+|.+...+++.++
T Consensus 174 ts~LD~~-------~~~~l~~~l~~l~~~g~tiiivtHd~~~~~----~~~d~v~~l~~G~i~~~g~~~~~ 233 (256)
T 1vpl_A 174 TSGLDVL-------NAREVRKILKQASQEGLTILVSSHNMLEVE----FLCDRIALIHNGTIVETGTVEEL 233 (256)
T ss_dssp TTTCCHH-------HHHHHHHHHHHHHHTTCEEEEEECCHHHHT----TTCSEEEEEETTEEEEEEEHHHH
T ss_pred ccccCHH-------HHHHHHHHHHHHHhCCCEEEEEcCCHHHHH----HHCCEEEEEECCEEEEecCHHHH
Confidence 9999973 234555555556667999999999999887 77888888988887765555554
No 20
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.92 E-value=5.6e-27 Score=251.45 Aligned_cols=280 Identities=14% Similarity=0.110 Sum_probs=191.0
Q ss_pred eeecceeeee--CcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccc-------ccccc
Q 038045 37 PIQDPLSFEK--GFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNYND-------SSRVV 107 (621)
Q Consensus 37 ~v~~~lsf~~--G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~~~-------~~R~I 107 (621)
...+++++.| |...+|++|||++++|+ +++|+||||||||||+++|+|++++.|.|.++|... .++.+
T Consensus 20 i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge---~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i~~~~~~~~rr~i 96 (390)
T 3gd7_A 20 MTVKDLTAKYTEGGNAILENISFSISPGQ---RVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQWRKAF 96 (390)
T ss_dssp EEEEEEEEESSSSSCCSEEEEEEEECTTC---EEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBTTSSCHHHHHHTE
T ss_pred EEEEEEEEEecCCCeEEeeceeEEEcCCC---EEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEECCcCChHHHhCCE
Confidence 4577888888 77889999999999999 999999999999999999999988789999999732 13679
Q ss_pred cccCCCCcccccchHHHHHHHHhcCC---------CccCc-cccccccC-----------ccCCceeecCCccEEEEecc
Q 038045 108 DGNFDDPRLTDYDTLLENVRDLREGK---------PVQVP-IYDFESSS-----------RTGYRTVEVPSSRIVIIEGI 166 (621)
Q Consensus 108 g~vfQdp~l~d~~tV~enL~~L~~gk---------~V~~p-~yd~~~~~-----------rsggq~qrVa~ArVLIvEG~ 166 (621)
+|+||++.+|+ +|+.+|+....... .+.+. ..+..+.+ +|||++|+++++|+++.+|.
T Consensus 97 g~v~Q~~~lf~-~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~ 175 (390)
T 3gd7_A 97 GVIPQKVFIFS-GTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAK 175 (390)
T ss_dssp EEESCCCCCCS-EEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCC
T ss_pred EEEcCCcccCc-cCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999997 69999996322110 01111 12222333 89999999999999999999
Q ss_pred eeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEEe
Q 038045 167 YALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIYL 246 (621)
Q Consensus 167 lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIYi 246 (621)
++|+|||+++||+.. ...++.+.+.+ ..|.|++.++|+++ +. ..+|++.+|++|.+.+.+++.++|-
T Consensus 176 lLLLDEPts~LD~~~-------~~~l~~~l~~~-~~~~tvi~vtHd~e-~~----~~aDri~vl~~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 176 ILLLDEPSAHLDPVT-------YQIIRRTLKQA-FADCTVILCEARIE-AM----LECDQFLVIEENKVRQYDSILELYH 242 (390)
T ss_dssp EEEEESHHHHSCHHH-------HHHHHHHHHTT-TTTSCEEEECSSSG-GG----TTCSEEEEEETTEEEEESSHHHHHH
T ss_pred EEEEeCCccCCCHHH-------HHHHHHHHHHH-hCCCEEEEEEcCHH-HH----HhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999732 12233333332 24889999999974 43 5589999999999999999999988
Q ss_pred cCCCCCcccc-----cceeEEeecCCeeEEEeeeeecCCCeEeccc-eeeEEEeeeecceeccCceEEEEEeecceeeeC
Q 038045 247 LPPGEDPESC-----QSYLRMRNKDGKYSLMFEEWVTDIPFVISPR-ITFEVSVRLLGGLMALGYTIATILKRSSHVFCD 320 (621)
Q Consensus 247 ~P~~~~~e~~-----~d~Irvr~~~g~~~L~f~e~i~d~~fIi~P~-~~FeV~~~~LgGll~lgy~i~~~~~~~~~i~~d 320 (621)
.|.+.+.... .+++..+... .......+..+. ....+....-..-...|-.+.+.++|+.....+
T Consensus 243 ~p~~~~va~f~g~~~~n~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iRPe~i~~~~ 313 (390)
T 3gd7_A 243 YPADRFVAGFIGSPKMNFLPVKVTA---------TAIDQVQVELPMPNRQQVWLPVESRDVQVGANMSLGIRPEHLLPSD 313 (390)
T ss_dssp CCSBHHHHHHSSSSCCEEEEEEEEE---------ECSSCEEEECSSTTCCEEEECBCCTTCCTTCEEEEEECGGGCEETT
T ss_pred CCCchHHHhhcCCccccccceeEee---------ccccceeEEeccCccccccccccccccCCCCeEEEEEchhheEecC
Confidence 7776543221 1222111000 000000000000 000111110011123466788889999977654
Q ss_pred CC--ceEEehhhHhhcCce-eEEEe
Q 038045 321 DR--GVCVKIDWLEQLNRQ-YIQVQ 342 (621)
Q Consensus 321 ~~--gv~i~v~~le~l~~~-~i~i~ 342 (621)
.. ++..+|..++.+|.. ++.++
T Consensus 314 ~~~~~~~~~v~~~~~~G~~~~~~~~ 338 (390)
T 3gd7_A 314 IADVILEGEVQVVEQLGNETQIHIQ 338 (390)
T ss_dssp TCSCEEEEEEEEEEECSSCEEEEEE
T ss_pred CCCceEEEEEEEEEEeCCeEEEEEE
Confidence 32 266788889999976 44444
No 21
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.92 E-value=7e-26 Score=227.64 Aligned_cols=191 Identities=17% Similarity=0.192 Sum_probs=154.0
Q ss_pred eecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-----ccccccccC
Q 038045 38 IQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-----SSRVVDGNF 111 (621)
Q Consensus 38 v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-----~~R~Ig~vf 111 (621)
..+++++.||. +|+++||++++ + ++||+||||||||||+++|+|++ |+.|.|.++|... .++.++|+|
T Consensus 3 ~~~~l~~~y~~--~l~~isl~i~~-e---~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~ 76 (240)
T 2onk_A 3 LKVRAEKRLGN--FRLNVDFEMGR-D---YCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVP 76 (240)
T ss_dssp EEEEEEEEETT--EEEEEEEEECS-S---EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCC
T ss_pred EEEEEEEEeCC--EEeeeEEEECC-E---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEc
Confidence 35678888876 49999999999 9 99999999999999999999999 8999999999632 235699999
Q ss_pred CCCcccccchHHHHHHHHhcCC--------------CccCc-cccccccCccCCceeecCCccEEEEecceeccccccCC
Q 038045 112 DDPRLTDYDTLLENVRDLREGK--------------PVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPL 176 (621)
Q Consensus 112 Qdp~l~d~~tV~enL~~L~~gk--------------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~ 176 (621)
|++.+++.+|+.+|+.+..... .+.+. ..+....++|+|++|+++.+++++.+|.++++|||++.
T Consensus 77 q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~ 156 (240)
T 2onk_A 77 QDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSA 156 (240)
T ss_dssp SSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSS
T ss_pred CCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 9999999999999998632110 11121 23445678999999999999999999999999999999
Q ss_pred CCeeEEecCCchHHHHHHHHHHHH-HcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEE
Q 038045 177 LDLRVSVTGGVHFDLVKRVLRDIQ-RVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIY 245 (621)
Q Consensus 177 LDlkV~Vd~~~d~~LirRI~Rdl~-erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIY 245 (621)
||+. ..+.+.++.+.+. +.|.|++.++|+++.+. ..+|++.++.+|.+...+++.+++
T Consensus 157 LD~~-------~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~----~~~d~i~~l~~G~i~~~g~~~~~~ 215 (240)
T 2onk_A 157 VDLK-------TKGVLMEELRFVQREFDVPILHVTHDLIEAA----MLADEVAVMLNGRIVEKGKLKELF 215 (240)
T ss_dssp CCHH-------HHHHHHHHHHHHHHHHTCCEEEEESCHHHHH----HHCSEEEEEETTEEEEEECHHHHH
T ss_pred CCHH-------HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH----HhCCEEEEEECCEEEEECCHHHHH
Confidence 9973 2344444555543 45999999999998876 677888889999887766666663
No 22
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.91 E-value=1.3e-25 Score=228.45 Aligned_cols=194 Identities=13% Similarity=0.103 Sum_probs=153.4
Q ss_pred eeecceeeeeC--c---EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc----cccc
Q 038045 37 PIQDPLSFEKG--F---FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND----SSRV 106 (621)
Q Consensus 37 ~v~~~lsf~~G--~---~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~----~~R~ 106 (621)
...+++++.|+ . +.+|+++||++++|+ ++||+||||||||||+++|+|++ |+.|.|.++|... .++.
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge---~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGE---CLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTC---EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhh
Confidence 34677888886 4 789999999999999 99999999999999999999999 8999999999642 2457
Q ss_pred ccccCCCC-cccccchHHHHHHHHhcC----CC-----------ccCc---cccccccCccCCceeecCCccEEEEecce
Q 038045 107 VDGNFDDP-RLTDYDTLLENVRDLREG----KP-----------VQVP---IYDFESSSRTGYRTVEVPSSRIVIIEGIY 167 (621)
Q Consensus 107 Ig~vfQdp-~l~d~~tV~enL~~L~~g----k~-----------V~~p---~yd~~~~~rsggq~qrVa~ArVLIvEG~l 167 (621)
++|+||+| ..+...|+.+|+.+.... .. +.+. ..+..+..+|+|++|+++.+++++.+|.+
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~l 159 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDI 159 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 99999997 466778999999874321 00 1122 12345678999999999999999999999
Q ss_pred eccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 168 ALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 168 LLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
+++|||++.||+. ....+..+.+.+.+.|.|++.++|+++.+. ..+|++.++.+|.+...+...++
T Consensus 160 llLDEPts~LD~~-------~~~~l~~~l~~l~~~g~tii~vtHd~~~~~----~~~d~v~~l~~G~i~~~g~~~~~ 225 (266)
T 2yz2_A 160 LILDEPLVGLDRE-------GKTDLLRIVEKWKTLGKTVILISHDIETVI----NHVDRVVVLEKGKKVFDGTRMEF 225 (266)
T ss_dssp EEEESTTTTCCHH-------HHHHHHHHHHHHHHTTCEEEEECSCCTTTG----GGCSEEEEEETTEEEEEEEHHHH
T ss_pred EEEcCccccCCHH-------HHHHHHHHHHHHHHcCCEEEEEeCCHHHHH----HhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999973 234455555555555999999999987765 66788888888877665555554
No 23
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.91 E-value=1.3e-25 Score=230.41 Aligned_cols=195 Identities=12% Similarity=0.011 Sum_probs=153.8
Q ss_pred eeeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc---------cc
Q 038045 36 VPIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS---------SR 105 (621)
Q Consensus 36 ~~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~---------~R 105 (621)
....+++++.|+...+|++|||++++|+ ++||+||||||||||+++|+|++ |+.|.|.++|.... ++
T Consensus 21 ~l~~~~l~~~y~~~~vL~~isl~i~~Ge---~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 97 (279)
T 2ihy_A 21 LIQLDQIGRMKQGKTILKKISWQIAKGD---KWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ 97 (279)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTC---EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHT
T ss_pred eEEEEeEEEEECCEEEEEeeeEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcC
Confidence 3567789999998999999999999999 99999999999999999999999 89999999986422 34
Q ss_pred cccccCCCCccc--ccchHHHHHHHHhc------C--C------------CccCc-cccccccCccCCceeecCCccEEE
Q 038045 106 VVDGNFDDPRLT--DYDTLLENVRDLRE------G--K------------PVQVP-IYDFESSSRTGYRTVEVPSSRIVI 162 (621)
Q Consensus 106 ~Ig~vfQdp~l~--d~~tV~enL~~L~~------g--k------------~V~~p-~yd~~~~~rsggq~qrVa~ArVLI 162 (621)
.++|+||++.++ ..+|+.+|+.+... + . .+.+. ..+....++|+|++|+++.+++++
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~ 177 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALM 177 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHH
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHh
Confidence 699999998643 34699999976321 0 0 01111 134456789999999999999999
Q ss_pred EecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCc--eehHhHHHHHhccccccchhhhcCCCCceeeccC
Q 038045 163 IEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEP--EEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQ 240 (621)
Q Consensus 163 vEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti--~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~ 240 (621)
.+|.++++|||++.||+. ..+.+.++.+.+.+.|.|+ +.++|+++.+. ..+|++.++.+|.+...+.
T Consensus 178 ~~p~lLlLDEPts~LD~~-------~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~----~~~d~v~~l~~G~i~~~g~ 246 (279)
T 2ihy_A 178 GQPQVLILDEPAAGLDFI-------ARESLLSILDSLSDSYPTLAMIYVTHFIEEIT----ANFSKILLLKDGQSIQQGA 246 (279)
T ss_dssp TCCSEEEEESTTTTCCHH-------HHHHHHHHHHHHHHHCTTCEEEEEESCGGGCC----TTCCEEEEEETTEEEEEEE
T ss_pred CCCCEEEEeCCccccCHH-------HHHHHHHHHHHHHHCCCEEEEEEEecCHHHHH----HhCCEEEEEECCEEEEECC
Confidence 999999999999999973 2344455555555559999 99999987765 6788888898888776555
Q ss_pred ceeE
Q 038045 241 TYDI 244 (621)
Q Consensus 241 ~aDI 244 (621)
+.++
T Consensus 247 ~~~~ 250 (279)
T 2ihy_A 247 VEDI 250 (279)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 24
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.91 E-value=4.3e-25 Score=222.43 Aligned_cols=190 Identities=15% Similarity=0.105 Sum_probs=145.3
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhh--C-CCeeEEEECCcccc--------cc
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNF--M-PSIAVISMDNYNDS--------SR 105 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagL--l-P~sGvI~lDg~~~~--------~R 105 (621)
...++++|.|+...+|+++||++++|+ ++||+||||||||||+++|+|+ + |+.|.|.++|.... ++
T Consensus 4 l~~~~l~~~y~~~~vl~~vsl~i~~Ge---~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (250)
T 2d2e_A 4 LEIRDLWASIDGETILKGVNLVVPKGE---VHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARK 80 (250)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTC---EEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHT
T ss_pred EEEEeEEEEECCEEEEeceEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 456789999998999999999999999 9999999999999999999998 6 89999999996321 12
Q ss_pred cccccCCCCcccccchHHHHHHHHh---cCC----------------CccC--ccccccccC-ccCCceeecCCccEEEE
Q 038045 106 VVDGNFDDPRLTDYDTLLENVRDLR---EGK----------------PVQV--PIYDFESSS-RTGYRTVEVPSSRIVII 163 (621)
Q Consensus 106 ~Ig~vfQdp~l~d~~tV~enL~~L~---~gk----------------~V~~--p~yd~~~~~-rsggq~qrVa~ArVLIv 163 (621)
.++|+||++.+|+.+++.+|+.+.. .+. .+.+ ...+....+ +|+|++|+++.+++++.
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~ 160 (250)
T 2d2e_A 81 GLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVL 160 (250)
T ss_dssp TBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHH
T ss_pred cEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHc
Confidence 4789999999999999999997632 110 0112 122344567 99999999999999999
Q ss_pred ecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhcccccc-chhhhcCCCCceeeccC
Q 038045 164 EGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSV-DQIKAVYPEGHTETMEQ 240 (621)
Q Consensus 164 EG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~-~d~iavl~eg~Ie~~~~ 240 (621)
+|.++++|||++.||+. ....+.++.+.+.+.|.|++.++|+++.+. .. +|++.++.+|.+...++
T Consensus 161 ~p~lllLDEPts~LD~~-------~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~----~~~~d~v~~l~~G~i~~~g~ 227 (250)
T 2d2e_A 161 EPTYAVLDETDSGLDID-------ALKVVARGVNAMRGPNFGALVITHYQRILN----YIQPDKVHVMMDGRVVATGG 227 (250)
T ss_dssp CCSEEEEECGGGTTCHH-------HHHHHHHHHHHHCSTTCEEEEECSSSGGGG----TSCCSEEEEEETTEEEEEES
T ss_pred CCCEEEEeCCCcCCCHH-------HHHHHHHHHHHHHhcCCEEEEEecCHHHHH----HhcCCEEEEEECCEEEEEeC
Confidence 99999999999999973 234444555555456899999999987665 55 47888888887765443
No 25
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.90 E-value=4e-25 Score=218.91 Aligned_cols=179 Identities=12% Similarity=0.052 Sum_probs=143.1
Q ss_pred ceeeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc--ccccccccC
Q 038045 35 IVPIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND--SSRVVDGNF 111 (621)
Q Consensus 35 ~~~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~--~~R~Ig~vf 111 (621)
-....+++++.|+. .+|+++||++++|+ +++|+||||||||||+++|+|++ |+.|.|.++|... .++.++|+|
T Consensus 9 ~~l~~~~ls~~y~~-~il~~vsl~i~~Ge---~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~ 84 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK-PVLERITMTIEKGN---VVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLP 84 (214)
T ss_dssp CEEEEEEEEEESSS-EEEEEEEEEEETTC---CEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEEC
T ss_pred ceEEEEEEEEEeCC-eEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEe
Confidence 34567889999988 99999999999999 99999999999999999999999 8999999999642 345799999
Q ss_pred CCCcccccchHHHHHHHHhc--C--CC----------ccCccccccccCccCCceeecCCccEEEEecceeccccccCCC
Q 038045 112 DDPRLTDYDTLLENVRDLRE--G--KP----------VQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLL 177 (621)
Q Consensus 112 Qdp~l~d~~tV~enL~~L~~--g--k~----------V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~L 177 (621)
|++.+++.+|+.+|+.+... + .. +.+..++.....+|+|++|++..+++++.+|.++++|||++.|
T Consensus 85 q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~L 164 (214)
T 1sgw_A 85 EEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAI 164 (214)
T ss_dssp SSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTS
T ss_pred CCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCC
Confidence 99999999999999987421 1 10 1111124456788999999999999999999999999999999
Q ss_pred CeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhh
Q 038045 178 DLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKA 228 (621)
Q Consensus 178 DlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~ia 228 (621)
|+. ....+.++.+.+.+.|.|++.++|+++.+. ..+|++.
T Consensus 165 D~~-------~~~~l~~~l~~~~~~g~tiiivtHd~~~~~----~~~d~v~ 204 (214)
T 1sgw_A 165 DED-------SKHKVLKSILEILKEKGIVIISSREELSYC----DVNENLH 204 (214)
T ss_dssp CTT-------THHHHHHHHHHHHHHHSEEEEEESSCCTTS----SEEEEGG
T ss_pred CHH-------HHHHHHHHHHHHHhCCCEEEEEeCCHHHHH----HhCCEEE
Confidence 973 234444555555555899999999987664 4444444
No 26
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.90 E-value=1.9e-25 Score=225.01 Aligned_cols=192 Identities=17% Similarity=0.247 Sum_probs=151.0
Q ss_pred eeecceeeee--CcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc-------ccc
Q 038045 37 PIQDPLSFEK--GFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS-------SRV 106 (621)
Q Consensus 37 ~v~~~lsf~~--G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~-------~R~ 106 (621)
...++++|.| +...+|+++||++++|+ ++||+||||||||||+++|+|++ |+.|.|.++|.... ++.
T Consensus 8 ~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 84 (247)
T 2ff7_A 8 ITFRNIRFRYKPDSPVILDNINLSIKQGE---VIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84 (247)
T ss_dssp EEEEEEEEESSTTSCEEEEEEEEEEETTC---EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred eeEEEEEEEeCCCCcceeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 3567888988 46789999999999999 99999999999999999999999 89999999996321 246
Q ss_pred ccccCCCCcccccchHHHHHHHHhcCCC----------ccCc------------cccccccCccCCceeecCCccEEEEe
Q 038045 107 VDGNFDDPRLTDYDTLLENVRDLREGKP----------VQVP------------IYDFESSSRTGYRTVEVPSSRIVIIE 164 (621)
Q Consensus 107 Ig~vfQdp~l~d~~tV~enL~~L~~gk~----------V~~p------------~yd~~~~~rsggq~qrVa~ArVLIvE 164 (621)
++|+||++.+|+ .|+.+|+.+...... +.+. ..+.....+|+|++|+++.+++++.+
T Consensus 85 i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~ 163 (247)
T 2ff7_A 85 VGVVLQDNVLLN-RSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNN 163 (247)
T ss_dssp EEEECSSCCCTT-SBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTC
T ss_pred EEEEeCCCcccc-ccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcC
Confidence 899999999887 599999976421110 0000 01122368999999999999999999
Q ss_pred cceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 165 GIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 165 G~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
|.++++|||++.||+. ....+.++.+.+. .|.|++.++|+++.+. .+|++.++.+|.+...+.+.++
T Consensus 164 p~lllLDEPts~LD~~-------~~~~i~~~l~~~~-~g~tviivtH~~~~~~-----~~d~v~~l~~G~i~~~g~~~~l 230 (247)
T 2ff7_A 164 PKILIFDEATSALDYE-------SEHVIMRNMHKIC-KGRTVIIIAHRLSTVK-----NADRIIVMEKGKIVEQGKHKEL 230 (247)
T ss_dssp CSEEEECCCCSCCCHH-------HHHHHHHHHHHHH-TTSEEEEECSSGGGGT-----TSSEEEEEETTEEEEEECHHHH
T ss_pred CCEEEEeCCcccCCHH-------HHHHHHHHHHHHc-CCCEEEEEeCCHHHHH-----hCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999973 2344555555553 5999999999987543 3788888999988776666666
Q ss_pred E
Q 038045 245 Y 245 (621)
Q Consensus 245 Y 245 (621)
+
T Consensus 231 ~ 231 (247)
T 2ff7_A 231 L 231 (247)
T ss_dssp H
T ss_pred H
Confidence 3
No 27
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.90 E-value=2.1e-25 Score=227.75 Aligned_cols=192 Identities=17% Similarity=0.151 Sum_probs=151.3
Q ss_pred eeecceeeeeCc---EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc-------cc
Q 038045 37 PIQDPLSFEKGF---FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS-------SR 105 (621)
Q Consensus 37 ~v~~~lsf~~G~---~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~-------~R 105 (621)
...++++|.|+. ..+|++|||++++|+ +++|+||||||||||+++|+|++ |+.|.|.++|.... ++
T Consensus 17 l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge---~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGK---VTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp EEEEEEEECCTTCTTSCCEEEEEEEECTTC---EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred EEEEEEEEEeCCCCCceeeEeeEEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 457788888875 789999999999999 99999999999999999999999 89999999996321 24
Q ss_pred cccccCCCCcccccchHHHHHHHHhcCCCc-----------c-----------C-ccccccccCccCCceeecCCccEEE
Q 038045 106 VVDGNFDDPRLTDYDTLLENVRDLREGKPV-----------Q-----------V-PIYDFESSSRTGYRTVEVPSSRIVI 162 (621)
Q Consensus 106 ~Ig~vfQdp~l~d~~tV~enL~~L~~gk~V-----------~-----------~-p~yd~~~~~rsggq~qrVa~ArVLI 162 (621)
.++|+||++.+|+ .|+.+|+.+....... . + ...+.....+|+|++|+++.+++++
T Consensus 94 ~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~ 172 (271)
T 2ixe_A 94 QVAAVGQEPLLFG-RSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALI 172 (271)
T ss_dssp HEEEECSSCCCCS-SBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHT
T ss_pred cEEEEecCCcccc-ccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHh
Confidence 6899999999887 5999999874321100 0 0 0123445789999999999999999
Q ss_pred EecceeccccccCCCCeeEEecCCchHHHHHHHHHHHH-HcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCc
Q 038045 163 IEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQ-RVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQT 241 (621)
Q Consensus 163 vEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~-erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~ 241 (621)
.+|.++++|||++.||+. ....+.++.+.+. +.|.|++.++|+++.+. . +|++.++.+|.+...+.+
T Consensus 173 ~~p~lllLDEPts~LD~~-------~~~~i~~~l~~~~~~~g~tviivtHd~~~~~----~-~d~v~~l~~G~i~~~g~~ 240 (271)
T 2ixe_A 173 RKPRLLILDNATSALDAG-------NQLRVQRLLYESPEWASRTVLLITQQLSLAE----R-AHHILFLKEGSVCEQGTH 240 (271)
T ss_dssp TCCSEEEEESTTTTCCHH-------HHHHHHHHHHHCTTTTTSEEEEECSCHHHHT----T-CSEEEEEETTEEEEEECH
T ss_pred cCCCEEEEECCccCCCHH-------HHHHHHHHHHHHHhhcCCEEEEEeCCHHHHH----h-CCEEEEEECCEEEEECCH
Confidence 999999999999999973 2334444444432 34899999999998764 4 788888998988766666
Q ss_pred eeE
Q 038045 242 YDI 244 (621)
Q Consensus 242 aDI 244 (621)
.++
T Consensus 241 ~~l 243 (271)
T 2ixe_A 241 LQL 243 (271)
T ss_dssp HHH
T ss_pred HHH
Confidence 555
No 28
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.90 E-value=3.6e-25 Score=230.40 Aligned_cols=191 Identities=17% Similarity=0.175 Sum_probs=153.4
Q ss_pred eeecceeeee-CcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-------ccccc
Q 038045 37 PIQDPLSFEK-GFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-------SSRVV 107 (621)
Q Consensus 37 ~v~~~lsf~~-G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-------~~R~I 107 (621)
...++++|.| +...+|++|||++++|+ ++||+||||||||||+++|+|++ |..|.|.+||... .++.+
T Consensus 54 i~~~~vs~~y~~~~~vL~~isl~i~~Ge---~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i 130 (306)
T 3nh6_A 54 IEFENVHFSYADGRETLQDVSFTVMPGQ---TLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHI 130 (306)
T ss_dssp EEEEEEEEESSTTCEEEEEEEEEECTTC---EEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTE
T ss_pred EEEEEEEEEcCCCCceeeeeeEEEcCCC---EEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcce
Confidence 4578899998 46789999999999999 99999999999999999999999 9999999999732 23579
Q ss_pred cccCCCCcccccchHHHHHHHHhcCCC----------c-------cCc-ccc----ccccCccCCceeecCCccEEEEec
Q 038045 108 DGNFDDPRLTDYDTLLENVRDLREGKP----------V-------QVP-IYD----FESSSRTGYRTVEVPSSRIVIIEG 165 (621)
Q Consensus 108 g~vfQdp~l~d~~tV~enL~~L~~gk~----------V-------~~p-~yd----~~~~~rsggq~qrVa~ArVLIvEG 165 (621)
+|+||+|.+|+ .|+.+||.+...... . ..| .|+ .....+|||++|++++||+++.+|
T Consensus 131 ~~v~Q~~~lf~-~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p 209 (306)
T 3nh6_A 131 GVVPQDTVLFN-DTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAP 209 (306)
T ss_dssp EEECSSCCCCS-EEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEecCCccCc-ccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCC
Confidence 99999999985 599999986432110 0 011 111 223578999999999999999999
Q ss_pred ceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 166 IYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 166 ~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
.++++|||++.||+. ....+....+.+. .+.|++.|+|++..+. . +|++.+|++|.+...+++.++
T Consensus 210 ~iLlLDEPts~LD~~-------~~~~i~~~l~~l~-~~~Tvi~itH~l~~~~----~-aD~i~vl~~G~iv~~G~~~el 275 (306)
T 3nh6_A 210 GIILLDEATSALDTS-------NERAIQASLAKVC-ANRTTIVVAHRLSTVV----N-ADQILVIKDGCIVERGRHEAL 275 (306)
T ss_dssp SEEEEECCSSCCCHH-------HHHHHHHHHHHHH-TTSEEEEECCSHHHHH----T-CSEEEEEETTEEEEEECHHHH
T ss_pred CEEEEECCcccCCHH-------HHHHHHHHHHHHc-CCCEEEEEEcChHHHH----c-CCEEEEEECCEEEEECCHHHH
Confidence 999999999999973 2233444444443 4789999999998875 4 788999999999888888776
No 29
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.90 E-value=1.1e-24 Score=220.50 Aligned_cols=187 Identities=17% Similarity=0.131 Sum_probs=149.0
Q ss_pred eeecceeeeeC-cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccccccccccCCCC
Q 038045 37 PIQDPLSFEKG-FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDSSRVVDGNFDDP 114 (621)
Q Consensus 37 ~v~~~lsf~~G-~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~~R~Ig~vfQdp 114 (621)
...+++++.++ ...+|+++||++++|+ ++||+||||||||||+++|+|++ |+.|.|. ..+.++|+||++
T Consensus 5 l~i~~l~~~y~~~~~vl~~isl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~------~~~~i~~v~q~~ 75 (253)
T 2nq2_C 5 LSVENLGFYYQAENFLFQQLNFDLNKGD---ILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE------VYQSIGFVPQFF 75 (253)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEEETTC---EEEEECCSSSSHHHHHHHHTTSSCCSEEEEE------ECSCEEEECSCC
T ss_pred EEEeeEEEEeCCCCeEEEEEEEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEE------EeccEEEEcCCC
Confidence 45678999998 7889999999999999 99999999999999999999999 8999998 235799999999
Q ss_pred cccccchHHHHHHHHhc---C-----C------------CccCc-cccccccCccCCceeecCCccEEEEecceeccccc
Q 038045 115 RLTDYDTLLENVRDLRE---G-----K------------PVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKL 173 (621)
Q Consensus 115 ~l~d~~tV~enL~~L~~---g-----k------------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp 173 (621)
.+++..|+.+|+.+... + . .+.+. ..+.....+|+|++|+++.+++++.+|.++++|||
T Consensus 76 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEP 155 (253)
T 2nq2_C 76 SSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEP 155 (253)
T ss_dssp CCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSS
T ss_pred ccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 99989999999987431 1 0 01111 13344678999999999999999999999999999
Q ss_pred cCCCCeeEEecCCchHHHHHHHHHHHHHc-CCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 174 RPLLDLRVSVTGGVHFDLVKRVLRDIQRV-GQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 174 ~s~LDlkV~Vd~~~d~~LirRI~Rdl~er-G~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
++.||+. ..+.+.++.+.+.+. |.|++.++|+++.+. ..+|++.++.+|. ...+.+.++
T Consensus 156 ts~LD~~-------~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~----~~~d~v~~l~~G~-~~~g~~~~~ 215 (253)
T 2nq2_C 156 TSALDLA-------NQDIVLSLLIDLAQSQNMTVVFTTHQPNQVV----AIANKTLLLNKQN-FKFGETRNI 215 (253)
T ss_dssp STTSCHH-------HHHHHHHHHHHHHHTSCCEEEEEESCHHHHH----HHCSEEEEEETTE-EEEEEHHHH
T ss_pred cccCCHH-------HHHHHHHHHHHHHHhcCCEEEEEecCHHHHH----HhCCEEEEEeCCe-EecCCHHHH
Confidence 9999973 234444555555444 999999999998876 6677777787776 444444443
No 30
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.90 E-value=3.5e-25 Score=222.09 Aligned_cols=190 Identities=16% Similarity=0.176 Sum_probs=147.0
Q ss_pred eecceeeee-CcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-------cccccc
Q 038045 38 IQDPLSFEK-GFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-------SSRVVD 108 (621)
Q Consensus 38 v~~~lsf~~-G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-------~~R~Ig 108 (621)
..++++|.| +...+|+++||++++|+ +++|+||||||||||+++|+|++ |..|.|.++|... .++.++
T Consensus 3 ~~~~l~~~y~~~~~vl~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 3 SARHVDFAYDDSEQILRDISFEAQPNS---IIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp EEEEEEECSSSSSCSEEEEEEEECTTE---EEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEeCCCCceEEEeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 356788888 66789999999999999 99999999999999999999999 8999999998632 234699
Q ss_pred ccCCCCcccccchHHHHHHHH-hcCCC----------ccCcc------------ccccccCccCCceeecCCccEEEEec
Q 038045 109 GNFDDPRLTDYDTLLENVRDL-REGKP----------VQVPI------------YDFESSSRTGYRTVEVPSSRIVIIEG 165 (621)
Q Consensus 109 ~vfQdp~l~d~~tV~enL~~L-~~gk~----------V~~p~------------yd~~~~~rsggq~qrVa~ArVLIvEG 165 (621)
|+||++.+|+ .|+.+|+.+. ..... +.+.. .+.....+|+|++|+++.+++++.+|
T Consensus 80 ~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p 158 (243)
T 1mv5_A 80 FVSQDSAIMA-GTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNP 158 (243)
T ss_dssp EECCSSCCCC-EEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEcCCCcccc-ccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCC
Confidence 9999999887 4999999764 21110 01100 11224589999999999999999999
Q ss_pred ceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 166 IYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 166 ~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
.++++|||++.||+.. .+.+..+.+.+. .|.|++.++|+++... .+|++.++.+|.+...+.+.++
T Consensus 159 ~lllLDEPts~LD~~~-------~~~i~~~l~~~~-~~~tvi~vtH~~~~~~-----~~d~v~~l~~G~i~~~g~~~~~ 224 (243)
T 1mv5_A 159 KILMLDEATASLDSES-------ESMVQKALDSLM-KGRTTLVIAHRLSTIV-----DADKIYFIEKGQITGSGKHNEL 224 (243)
T ss_dssp SEEEEECCSCSSCSSS-------CCHHHHHHHHHH-TTSEEEEECCSHHHHH-----HCSEEEEEETTEECCCSCHHHH
T ss_pred CEEEEECCcccCCHHH-------HHHHHHHHHHhc-CCCEEEEEeCChHHHH-----hCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999742 123334444444 5899999999987653 3677788888887665555544
No 31
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.89 E-value=8e-25 Score=222.83 Aligned_cols=194 Identities=10% Similarity=0.072 Sum_probs=150.4
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhh--C-CCeeEEEECCcccc--------cc
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNF--M-PSIAVISMDNYNDS--------SR 105 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagL--l-P~sGvI~lDg~~~~--------~R 105 (621)
...++++|.|+...+|+++||++++|+ ++||+||||||||||+++|+|+ . |+.|.|.++|.... ++
T Consensus 21 l~~~~l~~~y~~~~vl~~vsl~i~~Ge---~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 97 (267)
T 2zu0_C 21 LSIKDLHVSVEDKAILRGLSLDVHPGE---VHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGE 97 (267)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTC---EEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHH
T ss_pred EEEEeEEEEECCEEEEEeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhC
Confidence 456789999998999999999999999 9999999999999999999998 4 78999999996321 12
Q ss_pred cccccCCCCcccccchHHHHHHHHh------cCC-----------------CccCc--ccccccc-CccCCceeecCCcc
Q 038045 106 VVDGNFDDPRLTDYDTLLENVRDLR------EGK-----------------PVQVP--IYDFESS-SRTGYRTVEVPSSR 159 (621)
Q Consensus 106 ~Ig~vfQdp~l~d~~tV~enL~~L~------~gk-----------------~V~~p--~yd~~~~-~rsggq~qrVa~Ar 159 (621)
.++|+||++.+++.+++.+++.... .+. .+.+. ..+.... .+|+|++|+++.++
T Consensus 98 ~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAr 177 (267)
T 2zu0_C 98 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQ 177 (267)
T ss_dssp TEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHH
T ss_pred CEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHH
Confidence 4889999999999999999886532 010 01121 1233344 49999999999999
Q ss_pred EEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhcccccc-chhhhcCCCCceeec
Q 038045 160 IVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSV-DQIKAVYPEGHTETM 238 (621)
Q Consensus 160 VLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~-~d~iavl~eg~Ie~~ 238 (621)
+++.+|.++++|||++.||+. ..+.+..+.+.+.+.|.|++.++|+++.+. .. +|++.++.+|.+...
T Consensus 178 aL~~~p~lLlLDEPts~LD~~-------~~~~l~~~l~~l~~~g~tviivtHd~~~~~----~~~~d~v~~l~~G~i~~~ 246 (267)
T 2zu0_C 178 MAVLEPELCILDESDSGLDID-------ALKVVADGVNSLRDGKRSFIIVTHYQRILD----YIKPDYVHVLYQGRIVKS 246 (267)
T ss_dssp HHHHCCSEEEEESTTTTCCHH-------HHHHHHHHHHTTCCSSCEEEEECSSGGGGG----TSCCSEEEEEETTEEEEE
T ss_pred HHHhCCCEEEEeCCCCCCCHH-------HHHHHHHHHHHHHhcCCEEEEEeeCHHHHH----hhcCCEEEEEECCEEEEE
Confidence 999999999999999999973 233444444444445899999999987664 44 788888888887665
Q ss_pred cCceeE
Q 038045 239 EQTYDI 244 (621)
Q Consensus 239 ~~~aDI 244 (621)
+...++
T Consensus 247 g~~~~~ 252 (267)
T 2zu0_C 247 GDFTLV 252 (267)
T ss_dssp ECTTHH
T ss_pred cCHHHH
Confidence 554443
No 32
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.89 E-value=1.8e-24 Score=218.54 Aligned_cols=189 Identities=10% Similarity=0.065 Sum_probs=149.5
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc-------ccccc
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS-------SRVVD 108 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~-------~R~Ig 108 (621)
...++++|. .+|+++||++++|+ +++|+||||||||||+++|+|++ |+ |.|.++|.... ++.++
T Consensus 5 l~~~~l~~~----~vl~~vsl~i~~Ge---~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~ 76 (249)
T 2qi9_C 5 MQLQDVAES----TRLGPLSGEVRAGE---ILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRA 76 (249)
T ss_dssp EEEEEEEET----TTEEEEEEEEETTC---EEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEE
T ss_pred EEEEceEEE----EEEeeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEE
Confidence 345667765 58999999999999 99999999999999999999999 88 99999996321 24689
Q ss_pred ccCCCCcccccchHHHHHHHHhcCC-----------CccCc-cccccccCccCCceeecCCccEEEEecc-------eec
Q 038045 109 GNFDDPRLTDYDTLLENVRDLREGK-----------PVQVP-IYDFESSSRTGYRTVEVPSSRIVIIEGI-------YAL 169 (621)
Q Consensus 109 ~vfQdp~l~d~~tV~enL~~L~~gk-----------~V~~p-~yd~~~~~rsggq~qrVa~ArVLIvEG~-------lLL 169 (621)
|+||++.+++.+|+.+|+.+..... .+.+. ..+.....+|+|++|++..+++++.+|. +++
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lll 156 (249)
T 2qi9_C 77 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLL 156 (249)
T ss_dssp EECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEE
T ss_pred EECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEE
Confidence 9999999998999999998642110 01111 2344567899999999999999999999 999
Q ss_pred cccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 170 SEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 170 lDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
+|||++.||+. ....+.++.+.+.+.|.|++.++|+++.+. ..+|++.++.+|.+...+.+.++
T Consensus 157 LDEPts~LD~~-------~~~~l~~~l~~l~~~g~tviivtHd~~~~~----~~~d~v~~l~~G~i~~~g~~~~~ 220 (249)
T 2qi9_C 157 LDEPMNSLDVA-------QQSALDKILSALSQQGLAIVMSSHDLNHTL----RHAHRAWLLKGGKMLASGRREEV 220 (249)
T ss_dssp ESSTTTTCCHH-------HHHHHHHHHHHHHHTTCEEEEECSCHHHHH----HHCSEEEEEETTEEEEEEEHHHH
T ss_pred EECCcccCCHH-------HHHHHHHHHHHHHhCCCEEEEEeCCHHHHH----HhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999973 234455555555555999999999998876 66777788888877655555544
No 33
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.88 E-value=3.8e-24 Score=217.08 Aligned_cols=192 Identities=14% Similarity=0.163 Sum_probs=148.3
Q ss_pred eeeecceeeeeCc---EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccc-------ccc
Q 038045 36 VPIQDPLSFEKGF---FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNYND-------SSR 105 (621)
Q Consensus 36 ~~v~~~lsf~~G~---~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~~~-------~~R 105 (621)
....++++|.|+. ..+|+++||++++|+ +++|+||||||||||+++|+|+++..|.|.++|... .++
T Consensus 17 ~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~~ 93 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGT---TCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRS 93 (260)
T ss_dssp CEEEEEEEECCTTCCSSCSEEEEEEEECTTC---EEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHHHT
T ss_pred eEEEEEEEEEeCCCCcCceeEeeEEEECCCC---EEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHHhc
Confidence 3457788888875 469999999999999 999999999999999999999994489999999632 134
Q ss_pred cccccCCCCcccccchHHHHHHHHhcCCC----------cc-------Ccc-----ccccccCccCCceeecCCccEEEE
Q 038045 106 VVDGNFDDPRLTDYDTLLENVRDLREGKP----------VQ-------VPI-----YDFESSSRTGYRTVEVPSSRIVII 163 (621)
Q Consensus 106 ~Ig~vfQdp~l~d~~tV~enL~~L~~gk~----------V~-------~p~-----yd~~~~~rsggq~qrVa~ArVLIv 163 (621)
.++|+||++.+|+ .|+.+|+.+...... .. .|. .+.....+|+|++|+++.+++++.
T Consensus 94 ~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~ 172 (260)
T 2ghi_A 94 IIGIVPQDTILFN-ETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLK 172 (260)
T ss_dssp TEEEECSSCCCCS-EEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHH
T ss_pred cEEEEcCCCcccc-cCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHc
Confidence 6999999999886 599999976321100 00 110 112346899999999999999999
Q ss_pred ecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCcee
Q 038045 164 EGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYD 243 (621)
Q Consensus 164 EG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aD 243 (621)
+|.++++|||++.||+. ....+..+.+.+.+ |.|++.++|++... ..+|++.++.+|.+...+.+.+
T Consensus 173 ~p~lllLDEPts~LD~~-------~~~~i~~~l~~l~~-~~tviivtH~~~~~-----~~~d~i~~l~~G~i~~~g~~~~ 239 (260)
T 2ghi_A 173 DPKIVIFDEATSSLDSK-------TEYLFQKAVEDLRK-NRTLIIIAHRLSTI-----SSAESIILLNKGKIVEKGTHKD 239 (260)
T ss_dssp CCSEEEEECCCCTTCHH-------HHHHHHHHHHHHTT-TSEEEEECSSGGGS-----TTCSEEEEEETTEEEEEECHHH
T ss_pred CCCEEEEECccccCCHH-------HHHHHHHHHHHhcC-CCEEEEEcCCHHHH-----HhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999973 23444445555543 88999999997654 3378888898898876666655
Q ss_pred E
Q 038045 244 I 244 (621)
Q Consensus 244 I 244 (621)
+
T Consensus 240 l 240 (260)
T 2ghi_A 240 L 240 (260)
T ss_dssp H
T ss_pred H
Confidence 5
No 34
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.88 E-value=9.5e-24 Score=210.06 Aligned_cols=185 Identities=14% Similarity=0.092 Sum_probs=142.6
Q ss_pred eeecceeeee--CcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccccccccccCCC
Q 038045 37 PIQDPLSFEK--GFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDSSRVVDGNFDD 113 (621)
Q Consensus 37 ~v~~~lsf~~--G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~~R~Ig~vfQd 113 (621)
...++++|.| +...+|+++||++++|+ +++|+||||||||||+++|+|++ |..|.|.++| .++|+||+
T Consensus 7 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g------~i~~v~q~ 77 (229)
T 2pze_A 7 VVMENVTAFWEEGGTPVLKDINFKIERGQ---LLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------RISFCSQF 77 (229)
T ss_dssp EEEEEEEECSSTTSCCSEEEEEEEEETTC---EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS------CEEEECSS
T ss_pred EEEEEEEEEeCCCCceeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC------EEEEEecC
Confidence 4567888888 45789999999999999 99999999999999999999999 8999999998 48999999
Q ss_pred CcccccchHHHHHHHHhcCC---------Ccc-------Ccc-----ccccccCccCCceeecCCccEEEEecceecccc
Q 038045 114 PRLTDYDTLLENVRDLREGK---------PVQ-------VPI-----YDFESSSRTGYRTVEVPSSRIVIIEGIYALSEK 172 (621)
Q Consensus 114 p~l~d~~tV~enL~~L~~gk---------~V~-------~p~-----yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDE 172 (621)
+.+|+. |+.+|+.+..... ... .|. .+.....+|+|++|+++.+++++.+|.++++||
T Consensus 78 ~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDE 156 (229)
T 2pze_A 78 SWIMPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDS 156 (229)
T ss_dssp CCCCSB-CHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEES
T ss_pred CcccCC-CHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 998885 9999997632110 000 010 111236889999999999999999999999999
Q ss_pred ccCCCCeeEEecCCchHHHHHH-HHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 173 LRPLLDLRVSVTGGVHFDLVKR-VLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 173 p~s~LDlkV~Vd~~~d~~LirR-I~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
|++.||+. ....+.+ +.+.+. .|.|++.++|+++... .+|++.++.+|.+...+.+.++
T Consensus 157 Pts~LD~~-------~~~~i~~~l~~~~~-~~~tvi~vtH~~~~~~-----~~d~v~~l~~G~i~~~g~~~~~ 216 (229)
T 2pze_A 157 PFGYLDVL-------TEKEIFESCVCKLM-ANKTRILVTSKMEHLK-----KADKILILHEGSSYFYGTFSEL 216 (229)
T ss_dssp TTTTSCHH-------HHHHHHHHCCCCCT-TTSEEEEECCCHHHHH-----HCSEEEEEETTEEEEEECHHHH
T ss_pred cccCCCHH-------HHHHHHHHHHHHhh-CCCEEEEEcCChHHHH-----hCCEEEEEECCEEEEECCHHHH
Confidence 99999973 1222222 112222 3789999999987653 3677788888887766665554
No 35
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.88 E-value=1.3e-23 Score=214.07 Aligned_cols=187 Identities=12% Similarity=0.056 Sum_probs=146.4
Q ss_pred eecceeeeeCc----EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccc----cccccc-
Q 038045 38 IQDPLSFEKGF----FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNYND----SSRVVD- 108 (621)
Q Consensus 38 v~~~lsf~~G~----~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~~~----~~R~Ig- 108 (621)
..+++++.|+. ..+|+++||+++ |+ +++|+||||||||||+++|+|++|+.|.|.++|... .++.++
T Consensus 3 ~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge---~~~i~G~NGsGKSTLlk~l~Gl~p~~G~I~~~g~~~~~~~~~~~i~~ 78 (263)
T 2pjz_A 3 QLKNVGITLSGKGYERFSLENINLEVN-GE---KVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYIRYST 78 (263)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEC-SS---EEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGCSCCTTEEE
T ss_pred EEEEEEEEeCCCCccceeEEeeeEEEC-CE---EEEEECCCCCCHHHHHHHHhCCCCCCcEEEECCEECcchHHhhheEE
Confidence 35678888776 789999999999 99 999999999999999999999889999999998632 245799
Q ss_pred ccCCCCcccccchHHHHHHHHhc--CC----------CccCc--cccccccCccCCceeecCCccEEEEecceecccccc
Q 038045 109 GNFDDPRLTDYDTLLENVRDLRE--GK----------PVQVP--IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLR 174 (621)
Q Consensus 109 ~vfQdp~l~d~~tV~enL~~L~~--gk----------~V~~p--~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~ 174 (621)
|+||++.+ ..|+.+|+.+... .. .+.+. ..+....++|+|++|+++.+++++.+|.++++|||+
T Consensus 79 ~v~Q~~~l--~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPt 156 (263)
T 2pjz_A 79 NLPEAYEI--GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPF 156 (263)
T ss_dssp CCGGGSCT--TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTT
T ss_pred EeCCCCcc--CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCc
Confidence 99999987 8899999987431 11 11221 234556789999999999999999999999999999
Q ss_pred CCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccch-hhhcCCCCceeeccCceeE
Q 038045 175 PLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQ-IKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 175 s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d-~iavl~eg~Ie~~~~~aDI 244 (621)
+.||+. ....+.+.+.+...|++.++|+++.+. ..+| ++.++.+|.+...+++.++
T Consensus 157 s~LD~~----------~~~~l~~~L~~~~~tviivtHd~~~~~----~~~d~~i~~l~~G~i~~~g~~~~l 213 (263)
T 2pjz_A 157 ENVDAA----------RRHVISRYIKEYGKEGILVTHELDMLN----LYKEYKAYFLVGNRLQGPISVSEL 213 (263)
T ss_dssp TTCCHH----------HHHHHHHHHHHSCSEEEEEESCGGGGG----GCTTSEEEEEETTEEEEEEEHHHH
T ss_pred cccCHH----------HHHHHHHHHHHhcCcEEEEEcCHHHHH----HhcCceEEEEECCEEEEecCHHHH
Confidence 999972 223333333333229999999987765 6778 8888888887766555544
No 36
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.87 E-value=3.7e-24 Score=214.26 Aligned_cols=185 Identities=13% Similarity=0.088 Sum_probs=143.1
Q ss_pred eeecceeeeeC--cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccccccccccCCC
Q 038045 37 PIQDPLSFEKG--FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDSSRVVDGNFDD 113 (621)
Q Consensus 37 ~v~~~lsf~~G--~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~~R~Ig~vfQd 113 (621)
...++++|.|+ ...+|+++||++++|+ +++|+||||||||||+++|+|++ |..|.|.++| .++|+||+
T Consensus 4 l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g------~i~~v~Q~ 74 (237)
T 2cbz_A 4 ITVRNATFTWARSDPPTLNGITFSIPEGA---LVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG------SVAYVPQQ 74 (237)
T ss_dssp EEEEEEEEESCTTSCCSEEEEEEEECTTC---EEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS------CEEEECSS
T ss_pred EEEEEEEEEeCCCCCceeeeeEEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC------EEEEEcCC
Confidence 34678888887 5789999999999999 99999999999999999999999 8999999998 48999999
Q ss_pred CcccccchHHHHHHHHhcCCC---------ccC-------c-----cccccccCccCCceeecCCccEEEEecceecccc
Q 038045 114 PRLTDYDTLLENVRDLREGKP---------VQV-------P-----IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEK 172 (621)
Q Consensus 114 p~l~d~~tV~enL~~L~~gk~---------V~~-------p-----~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDE 172 (621)
+.+ +..|+.+|+.+...... ... | ..+.....+|+|++|+++.+++++.+|.++++||
T Consensus 75 ~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDE 153 (237)
T 2cbz_A 75 AWI-QNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDD 153 (237)
T ss_dssp CCC-CSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEES
T ss_pred CcC-CCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 865 57899999986432100 000 1 0234457899999999999999999999999999
Q ss_pred ccCCCCeeEEecCCchHHHHHHHH---HHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 173 LRPLLDLRVSVTGGVHFDLVKRVL---RDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 173 p~s~LDlkV~Vd~~~d~~LirRI~---Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
|++.||+. ....+..+. +.+ ..|.|++.++|+++.. ..+|++.++.+|.+...+++.++
T Consensus 154 Pts~LD~~-------~~~~i~~~l~~~~~~-~~~~tviivtH~~~~~-----~~~d~v~~l~~G~i~~~g~~~~~ 215 (237)
T 2cbz_A 154 PLSAVDAH-------VGKHIFENVIGPKGM-LKNKTRILVTHSMSYL-----PQVDVIIVMSGGKISEMGSYQEL 215 (237)
T ss_dssp TTTTSCHH-------HHHHHHHHTTSTTST-TTTSEEEEECSCSTTG-----GGSSEEEEEETTEEEEEECHHHH
T ss_pred cccccCHH-------HHHHHHHHHHHHHhh-cCCCEEEEEecChHHH-----HhCCEEEEEeCCEEEEeCCHHHH
Confidence 99999973 122222222 112 2488999999997653 34788888888888766665554
No 37
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.86 E-value=7e-23 Score=228.75 Aligned_cols=191 Identities=16% Similarity=0.151 Sum_probs=151.5
Q ss_pred eeecceeeeeCc--EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-------cccc
Q 038045 37 PIQDPLSFEKGF--FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-------SSRV 106 (621)
Q Consensus 37 ~v~~~lsf~~G~--~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-------~~R~ 106 (621)
...++++|.|+. ..+|+++||++++|+ +++|+||||||||||+++|+|++ |+.|.|.+||... .++.
T Consensus 342 i~~~~v~~~y~~~~~~~l~~i~l~i~~G~---~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~ 418 (582)
T 3b5x_A 342 VDVKDVTFTYQGKEKPALSHVSFSIPQGK---TVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRH 418 (582)
T ss_pred EEEEEEEEEcCCCCccccccceEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcC
Confidence 457789998874 679999999999999 99999999999999999999999 8999999999632 2357
Q ss_pred ccccCCCCcccccchHHHHHHHHh-cCCC----------ccC-------c-ccc----ccccCccCCceeecCCccEEEE
Q 038045 107 VDGNFDDPRLTDYDTLLENVRDLR-EGKP----------VQV-------P-IYD----FESSSRTGYRTVEVPSSRIVII 163 (621)
Q Consensus 107 Ig~vfQdp~l~d~~tV~enL~~L~-~gk~----------V~~-------p-~yd----~~~~~rsggq~qrVa~ArVLIv 163 (621)
++|++|+|.+|+. |+.+|+.+.. .... ... | .++ .....+||||+|+++.+|+++.
T Consensus 419 i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~ 497 (582)
T 3b5x_A 419 FALVSQNVHLFND-TIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLR 497 (582)
T ss_pred eEEEcCCCccccc-cHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHc
Confidence 9999999999874 9999998743 1110 000 1 111 1235789999999999999999
Q ss_pred ecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCcee
Q 038045 164 EGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYD 243 (621)
Q Consensus 164 EG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aD 243 (621)
+|.++++|||++.||+. ..+.+.+..+.+. .|.|++.++|++.... .+|++.++++|.+...+++.+
T Consensus 498 ~p~illlDEpts~LD~~-------~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-----~~d~i~~l~~G~i~~~g~~~~ 564 (582)
T 3b5x_A 498 DAPVLILDEATSALDTE-------SERAIQAALDELQ-KNKTVLVIAHRLSTIE-----QADEILVVDEGEIIERGRHAD 564 (582)
T ss_pred CCCEEEEECccccCCHH-------HHHHHHHHHHHHc-CCCEEEEEecCHHHHH-----hCCEEEEEECCEEEEECCHHH
Confidence 99999999999999973 2333444444443 3899999999987653 478888999999888777776
Q ss_pred E
Q 038045 244 I 244 (621)
Q Consensus 244 I 244 (621)
+
T Consensus 565 l 565 (582)
T 3b5x_A 565 L 565 (582)
T ss_pred H
Confidence 6
No 38
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.85 E-value=1.5e-22 Score=226.55 Aligned_cols=192 Identities=17% Similarity=0.226 Sum_probs=151.4
Q ss_pred eeecceeeeeCc---EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-------ccc
Q 038045 37 PIQDPLSFEKGF---FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-------SSR 105 (621)
Q Consensus 37 ~v~~~lsf~~G~---~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-------~~R 105 (621)
...++++|.|+. ..+|+++||++++|+ ++||+||||||||||+++|+|++ |+.|.|.+||... .++
T Consensus 342 i~~~~v~~~y~~~~~~~vl~~isl~i~~G~---~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~ 418 (595)
T 2yl4_A 342 LEFKNVHFAYPARPEVPIFQDFSLSIPSGS---VTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRS 418 (595)
T ss_dssp EEEEEEEEECSSCTTSEEEEEEEEEECTTC---EEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHH
T ss_pred EEEEEEEEEeCCCCCCccccceEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHh
Confidence 456789998864 479999999999999 99999999999999999999999 8999999999632 134
Q ss_pred cccccCCCCcccccchHHHHHHHHhcC---CC----------cc-------Cc-ccccc----ccCccCCceeecCCccE
Q 038045 106 VVDGNFDDPRLTDYDTLLENVRDLREG---KP----------VQ-------VP-IYDFE----SSSRTGYRTVEVPSSRI 160 (621)
Q Consensus 106 ~Ig~vfQdp~l~d~~tV~enL~~L~~g---k~----------V~-------~p-~yd~~----~~~rsggq~qrVa~ArV 160 (621)
.++|++|+|.+|+ .|+.+|+.+.... .. .. .| .++.. ...+||||+|+++.+|+
T Consensus 419 ~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAra 497 (595)
T 2yl4_A 419 KIGTVSQEPILFS-CSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARA 497 (595)
T ss_dssp SEEEECSSCCCCS-SBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHH
T ss_pred ceEEEccCCcccC-CCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHH
Confidence 6999999999987 5999999874321 00 00 11 12222 26789999999999999
Q ss_pred EEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccC
Q 038045 161 VIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQ 240 (621)
Q Consensus 161 LIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~ 240 (621)
++.+|.++++|||++.||+. ..+.+.+..+.+.+ |.|++.++|++.... .+|++.++++|.+...++
T Consensus 498 l~~~p~illlDEpts~LD~~-------~~~~i~~~l~~~~~-~~tvi~itH~~~~~~-----~~d~i~~l~~G~i~~~g~ 564 (595)
T 2yl4_A 498 LLKNPKILLLDEATSALDAE-------NEYLVQEALDRLMD-GRTVLVIAHRLSTIK-----NANMVAVLDQGKITEYGK 564 (595)
T ss_dssp HHHCCSEEEEECCCSSCCHH-------HHHHHHHHHHHHHT-TSEEEEECCCHHHHH-----HSSEEEEEETTEEEEEEC
T ss_pred HHcCCCEEEEECcccCCCHH-------HHHHHHHHHHHHhc-CCEEEEEecCHHHHH-----cCCEEEEEECCEEEEECC
Confidence 99999999999999999973 23444444444444 899999999987653 378888999999988888
Q ss_pred ceeEE
Q 038045 241 TYDIY 245 (621)
Q Consensus 241 ~aDIY 245 (621)
+.++.
T Consensus 565 ~~~l~ 569 (595)
T 2yl4_A 565 HEELL 569 (595)
T ss_dssp SCC--
T ss_pred HHHHH
Confidence 77763
No 39
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.85 E-value=8.5e-23 Score=228.66 Aligned_cols=191 Identities=15% Similarity=0.181 Sum_probs=152.2
Q ss_pred eeecceeeee--CcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc-------ccc
Q 038045 37 PIQDPLSFEK--GFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS-------SRV 106 (621)
Q Consensus 37 ~v~~~lsf~~--G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~-------~R~ 106 (621)
...++++|.| +...+|+++||++++|+ +++|+||||||||||+++|+|++ |..|.|.+||.... ++.
T Consensus 342 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge---~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~ 418 (587)
T 3qf4_A 342 VSFENVEFRYFENTDPVLSGVNFSVKPGS---LVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGH 418 (587)
T ss_dssp EEEEEEEECSSSSSCCSEEEEEEEECTTC---EEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHH
T ss_pred EEEEEEEEEcCCCCCcceeceEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhh
Confidence 4577888888 45679999999999999 99999999999999999999999 89999999997421 356
Q ss_pred ccccCCCCcccccchHHHHHHHHhcCCC----------c-------cCc-cc----cccccCccCCceeecCCccEEEEe
Q 038045 107 VDGNFDDPRLTDYDTLLENVRDLREGKP----------V-------QVP-IY----DFESSSRTGYRTVEVPSSRIVIIE 164 (621)
Q Consensus 107 Ig~vfQdp~l~d~~tV~enL~~L~~gk~----------V-------~~p-~y----d~~~~~rsggq~qrVa~ArVLIvE 164 (621)
++|++|+|.+|+. |+++|+.+...... . ..| .+ +.....+||||+|+++.||+++.+
T Consensus 419 i~~v~Q~~~lf~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~ 497 (587)
T 3qf4_A 419 ISAVPQETVLFSG-TIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKK 497 (587)
T ss_dssp EEEECSSCCCCSE-EHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTC
T ss_pred eEEECCCCcCcCc-cHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcC
Confidence 9999999999965 99999975432110 0 011 12 233457899999999999999999
Q ss_pred cceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 165 GIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 165 G~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
|.++++|||++.+|+. ..+.+.+..+.+ ..|+|++.|+|++... ..+|++.++++|.+...+++.++
T Consensus 498 p~illlDEpts~LD~~-------~~~~i~~~l~~~-~~~~tvi~itH~l~~~-----~~~d~i~vl~~G~i~~~g~~~el 564 (587)
T 3qf4_A 498 PKVLILDDCTSSVDPI-------TEKRILDGLKRY-TKGCTTFIITQKIPTA-----LLADKILVLHEGKVAGFGTHKEL 564 (587)
T ss_dssp CSEEEEESCCTTSCHH-------HHHHHHHHHHHH-STTCEEEEEESCHHHH-----TTSSEEEEEETTEEEEEECHHHH
T ss_pred CCEEEEECCcccCCHH-------HHHHHHHHHHHh-CCCCEEEEEecChHHH-----HhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999973 223333333433 3589999999999875 35788999999999888887776
No 40
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.85 E-value=1.3e-22 Score=226.62 Aligned_cols=191 Identities=16% Similarity=0.146 Sum_probs=151.1
Q ss_pred eeecceeeeeCc--EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-------cccc
Q 038045 37 PIQDPLSFEKGF--FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-------SSRV 106 (621)
Q Consensus 37 ~v~~~lsf~~G~--~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-------~~R~ 106 (621)
...++++|.|+. ..+|+++||++++|+ ++||+||||||||||+++|+|++ |+.|.|.+||... .++.
T Consensus 342 i~~~~v~~~y~~~~~~~l~~v~~~i~~G~---~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~ 418 (582)
T 3b60_A 342 LEFRNVTFTYPGREVPALRNINLKIPAGK---TVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQ 418 (582)
T ss_dssp EEEEEEEECSSSSSCCSEEEEEEEECTTC---EEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHT
T ss_pred EEEEEEEEEcCCCCCccccceeEEEcCCC---EEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhh
Confidence 457789998873 679999999999999 99999999999999999999999 8999999999632 1346
Q ss_pred ccccCCCCcccccchHHHHHHHHh-cCCC----------ccC-------c-ccc----ccccCccCCceeecCCccEEEE
Q 038045 107 VDGNFDDPRLTDYDTLLENVRDLR-EGKP----------VQV-------P-IYD----FESSSRTGYRTVEVPSSRIVII 163 (621)
Q Consensus 107 Ig~vfQdp~l~d~~tV~enL~~L~-~gk~----------V~~-------p-~yd----~~~~~rsggq~qrVa~ArVLIv 163 (621)
++|++|+|.+|+. |+.+|+.+.. .... ... | .++ .....+||||+|+++.+|+++.
T Consensus 419 i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~ 497 (582)
T 3b60_A 419 VALVSQNVHLFND-TVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR 497 (582)
T ss_dssp EEEECSSCCCCSS-BHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH
T ss_pred CeEEccCCcCCCC-CHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999975 9999998743 1110 000 1 111 1235789999999999999999
Q ss_pred ecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCcee
Q 038045 164 EGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYD 243 (621)
Q Consensus 164 EG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aD 243 (621)
+|.++++|||++.||+. ..+.+.+..+.+.+ |.|++.++|++... ..+|++.++++|.+...+++.+
T Consensus 498 ~p~illlDEpts~LD~~-------~~~~i~~~l~~~~~-~~tvi~itH~~~~~-----~~~d~i~~l~~G~i~~~g~~~~ 564 (582)
T 3b60_A 498 DSPILILDEATSALDTE-------SERAIQAALDELQK-NRTSLVIAHRLSTI-----EQADEIVVVEDGIIVERGTHSE 564 (582)
T ss_dssp CCSEEEEETTTSSCCHH-------HHHHHHHHHHHHHT-TSEEEEECSCGGGT-----TTCSEEEEEETTEEEEEECHHH
T ss_pred CCCEEEEECccccCCHH-------HHHHHHHHHHHHhC-CCEEEEEeccHHHH-----HhCCEEEEEECCEEEEecCHHH
Confidence 99999999999999973 23344444444443 89999999998643 3578888999998887777766
Q ss_pred E
Q 038045 244 I 244 (621)
Q Consensus 244 I 244 (621)
+
T Consensus 565 l 565 (582)
T 3b60_A 565 L 565 (582)
T ss_dssp H
T ss_pred H
Confidence 5
No 41
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.85 E-value=9e-23 Score=227.85 Aligned_cols=191 Identities=18% Similarity=0.201 Sum_probs=151.8
Q ss_pred eeecceeeeeC--cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-------cccc
Q 038045 37 PIQDPLSFEKG--FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-------SSRV 106 (621)
Q Consensus 37 ~v~~~lsf~~G--~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-------~~R~ 106 (621)
...++++|.|+ ...+|+++||++++|+ ++||+||||||||||+++|+|++ |..|.|.+||... .++.
T Consensus 340 i~~~~v~~~y~~~~~~~l~~isl~i~~G~---~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~ 416 (578)
T 4a82_A 340 IDIDHVSFQYNDNEAPILKDINLSIEKGE---TVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQ 416 (578)
T ss_dssp EEEEEEEECSCSSSCCSEEEEEEEECTTC---EEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHT
T ss_pred EEEEEEEEEcCCCCCcceeeeEEEECCCC---EEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 45678888885 4579999999999999 99999999999999999999999 9999999999732 2346
Q ss_pred ccccCCCCcccccchHHHHHHHHhcCCC----------c-------cCc-ccc----ccccCccCCceeecCCccEEEEe
Q 038045 107 VDGNFDDPRLTDYDTLLENVRDLREGKP----------V-------QVP-IYD----FESSSRTGYRTVEVPSSRIVIIE 164 (621)
Q Consensus 107 Ig~vfQdp~l~d~~tV~enL~~L~~gk~----------V-------~~p-~yd----~~~~~rsggq~qrVa~ArVLIvE 164 (621)
++|++|+|.+|+. |+.+|+.+...... . ..| .++ .....+||||+|+++.||+++.+
T Consensus 417 i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~ 495 (578)
T 4a82_A 417 IGLVQQDNILFSD-TVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNN 495 (578)
T ss_dssp EEEECSSCCCCSS-BHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHC
T ss_pred eEEEeCCCccCcc-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcC
Confidence 9999999999876 99999976432110 0 011 122 22347899999999999999999
Q ss_pred cceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 165 GIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 165 G~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
|.++++|||++.+|+. ..+.+.+..+.+ ..|.|++.++|++... ..+|++.++++|.+...+++.++
T Consensus 496 p~illlDEpts~LD~~-------~~~~i~~~l~~~-~~~~t~i~itH~l~~~-----~~~d~i~~l~~G~i~~~g~~~el 562 (578)
T 4a82_A 496 PPILILDEATSALDLE-------SESIIQEALDVL-SKDRTTLIVAHRLSTI-----THADKIVVIENGHIVETGTHREL 562 (578)
T ss_dssp CSEEEEESTTTTCCHH-------HHHHHHHHHHHH-TTTSEEEEECSSGGGT-----TTCSEEEEEETTEEEEEECHHHH
T ss_pred CCEEEEECccccCCHH-------HHHHHHHHHHHH-cCCCEEEEEecCHHHH-----HcCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999973 233444444444 3478999999998764 34889999999999888888776
No 42
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.84 E-value=8.9e-23 Score=228.85 Aligned_cols=191 Identities=14% Similarity=0.191 Sum_probs=151.8
Q ss_pred eeecceeeeeC-cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-------ccccc
Q 038045 37 PIQDPLSFEKG-FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-------SSRVV 107 (621)
Q Consensus 37 ~v~~~lsf~~G-~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-------~~R~I 107 (621)
...++++|.|+ ...+|+++||++++|+ ++||+||||||||||+++|+|++ |+.|.|.+||... .++.+
T Consensus 355 i~~~~v~~~y~~~~~~l~~isl~i~~G~---~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i 431 (598)
T 3qf4_B 355 IEFKNVWFSYDKKKPVLKDITFHIKPGQ---KVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSI 431 (598)
T ss_dssp EEEEEEECCSSSSSCSCCSEEEECCTTC---EEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHE
T ss_pred EEEEEEEEECCCCCccccceEEEEcCCC---EEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhce
Confidence 45778899885 4579999999999999 99999999999999999999999 9999999999742 13469
Q ss_pred cccCCCCcccccchHHHHHHHHhcCC----------Ccc-------Cc-cccc----cccCccCCceeecCCccEEEEec
Q 038045 108 DGNFDDPRLTDYDTLLENVRDLREGK----------PVQ-------VP-IYDF----ESSSRTGYRTVEVPSSRIVIIEG 165 (621)
Q Consensus 108 g~vfQdp~l~d~~tV~enL~~L~~gk----------~V~-------~p-~yd~----~~~~rsggq~qrVa~ArVLIvEG 165 (621)
++++|+|.+|+ .|+.+|+.+..... ... .| .++. ....+||||+|+++.||+++.+|
T Consensus 432 ~~v~Q~~~lf~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p 510 (598)
T 3qf4_B 432 GIVLQDTILFS-TTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANP 510 (598)
T ss_dssp EEECTTCCCCS-SBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCC
T ss_pred EEEeCCCcccc-ccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999986 59999998642210 000 01 1111 12478999999999999999999
Q ss_pred ceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 166 IYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 166 ~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
.++++|||++.||+. ....+.+..+.+. .|.|++.|+|++.... .+|++.++++|.+...+++.++
T Consensus 511 ~illlDEpts~LD~~-------~~~~i~~~l~~~~-~~~t~i~itH~l~~~~-----~~d~i~~l~~G~i~~~g~~~~l 576 (598)
T 3qf4_B 511 KILILDEATSNVDTK-------TEKSIQAAMWKLM-EGKTSIIIAHRLNTIK-----NADLIIVLRDGEIVEMGKHDEL 576 (598)
T ss_dssp SEEEECCCCTTCCHH-------HHHHHHHHHHHHH-TTSEEEEESCCTTHHH-----HCSEEEEECSSSEEECSCHHHH
T ss_pred CEEEEECCccCCCHH-------HHHHHHHHHHHHc-CCCEEEEEecCHHHHH-----cCCEEEEEECCEEEEECCHHHH
Confidence 999999999999973 2233444444443 5899999999988764 3788899999999988888776
No 43
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.83 E-value=6.1e-22 Score=204.43 Aligned_cols=182 Identities=14% Similarity=0.103 Sum_probs=131.9
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccccccccccCCCCc
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDSSRVVDGNFDDPR 115 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~~R~Ig~vfQdp~ 115 (621)
...++++|. ...+|+++||++++|+ +++|+||||||||||+++|+|++ |..|.|.++| .++|+||++.
T Consensus 41 l~~~~l~~~--~~~vl~~isl~i~~Ge---~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g------~i~~v~Q~~~ 109 (290)
T 2bbs_A 41 LSFSNFSLL--GTPVLKDINFKIERGQ---LLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------RISFCSQNSW 109 (290)
T ss_dssp -----------CCCSEEEEEEEECTTC---EEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS------CEEEECSSCC
T ss_pred EEEEEEEEc--CceEEEeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC------EEEEEeCCCc
Confidence 345677774 3579999999999999 99999999999999999999999 8999999998 4899999999
Q ss_pred ccccchHHHHHHHHhcCCC---------ccC-------cc-----ccccccCccCCceeecCCccEEEEecceecccccc
Q 038045 116 LTDYDTLLENVRDLREGKP---------VQV-------PI-----YDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLR 174 (621)
Q Consensus 116 l~d~~tV~enL~~L~~gk~---------V~~-------p~-----yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~ 174 (621)
+|+. |+.+|+. ...... ..+ +. .+.....+|+|++|+++.+++++.+|.++++|||+
T Consensus 110 l~~~-tv~enl~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPt 187 (290)
T 2bbs_A 110 IMPG-TIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF 187 (290)
T ss_dssp CCSS-BHHHHHH-TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred cCcc-cHHHHhh-CcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCc
Confidence 8885 9999997 211000 000 10 01113588999999999999999999999999999
Q ss_pred CCCCeeEEecCCchHHHHHH-HHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 175 PLLDLRVSVTGGVHFDLVKR-VLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 175 s~LDlkV~Vd~~~d~~LirR-I~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
+.||+. ....+.. +.+.+ ..|.|++.++|+++... .+|++.++.+|.+...+.+.++
T Consensus 188 s~LD~~-------~~~~i~~~ll~~~-~~~~tviivtHd~~~~~-----~~d~i~~l~~G~i~~~g~~~~l 245 (290)
T 2bbs_A 188 GYLDVL-------TEKEIFESCVCKL-MANKTRILVTSKMEHLK-----KADKILILHEGSSYFYGTFSEL 245 (290)
T ss_dssp TTCCHH-------HHHHHHHHCCCCC-TTTSEEEEECCCHHHHH-----HSSEEEEEETTEEEEEECHHHH
T ss_pred ccCCHH-------HHHHHHHHHHHHh-hCCCEEEEEecCHHHHH-----cCCEEEEEECCeEEEeCCHHHH
Confidence 999973 1222222 11122 24889999999987653 3777788888887665555554
No 44
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.80 E-value=8.9e-21 Score=229.11 Aligned_cols=191 Identities=18% Similarity=0.254 Sum_probs=153.6
Q ss_pred eeecceeeeeCc---EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-------ccc
Q 038045 37 PIQDPLSFEKGF---FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-------SSR 105 (621)
Q Consensus 37 ~v~~~lsf~~G~---~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-------~~R 105 (621)
...++++|.|+. ..+|+++||++++|+ ++||+||||||||||+++|.|++ |+.|.|.+||... .++
T Consensus 388 i~~~~v~~~y~~~~~~~vL~~isl~i~~G~---~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~ 464 (1284)
T 3g5u_A 388 LEFKNIHFSYPSRKEVQILKGLNLKVKSGQ---TVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLRE 464 (1284)
T ss_dssp EEEEEEEECCSSTTSCCSEEEEEEEECTTC---EEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred EEEEEEEEEcCCCCCCcceecceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHh
Confidence 456788998853 469999999999999 99999999999999999999999 9999999999732 234
Q ss_pred cccccCCCCcccccchHHHHHHHHhcCCC----------c-------cCc-cccc----cccCccCCceeecCCccEEEE
Q 038045 106 VVDGNFDDPRLTDYDTLLENVRDLREGKP----------V-------QVP-IYDF----ESSSRTGYRTVEVPSSRIVII 163 (621)
Q Consensus 106 ~Ig~vfQdp~l~d~~tV~enL~~L~~gk~----------V-------~~p-~yd~----~~~~rsggq~qrVa~ArVLIv 163 (621)
.+++++|+|.+|+. |+++||.+...... . ..| .++. ....+||||+|++++||+++.
T Consensus 465 ~i~~v~Q~~~l~~~-ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~ 543 (1284)
T 3g5u_A 465 IIGVVSQEPVLFAT-TIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVR 543 (1284)
T ss_dssp HEEEECSSCCCCSS-CHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHH
T ss_pred heEEEcCCCccCCc-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhc
Confidence 69999999999875 99999987542210 0 111 1222 234789999999999999999
Q ss_pred ecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCcee
Q 038045 164 EGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYD 243 (621)
Q Consensus 164 EG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aD 243 (621)
+|.++++|||++.||.. ..+.+.+..+.. ..|+|++.|+|++.... . +|++.+|++|.+...+++.+
T Consensus 544 ~p~iliLDEpts~LD~~-------~~~~i~~~l~~~-~~~~t~i~itH~l~~i~----~-~d~i~vl~~G~i~~~g~~~~ 610 (1284)
T 3g5u_A 544 NPKILLLDEATSALDTE-------SEAVVQAALDKA-REGRTTIVIAHRLSTVR----N-ADVIAGFDGGVIVEQGNHDE 610 (1284)
T ss_dssp CCSEEEEESTTCSSCHH-------HHHHHHHHHHHH-HTTSEEEEECSCHHHHT----T-CSEEEECSSSCCCCEECHHH
T ss_pred CCCEEEEECCCCCCCHH-------HHHHHHHHHHHH-cCCCEEEEEecCHHHHH----c-CCEEEEEECCEEEEECCHHH
Confidence 99999999999999973 234555555544 45999999999998774 3 78999999999988888877
Q ss_pred E
Q 038045 244 I 244 (621)
Q Consensus 244 I 244 (621)
+
T Consensus 611 l 611 (1284)
T 3g5u_A 611 L 611 (1284)
T ss_dssp H
T ss_pred H
Confidence 6
No 45
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.78 E-value=7.4e-21 Score=230.36 Aligned_cols=192 Identities=16% Similarity=0.199 Sum_probs=152.4
Q ss_pred eeecceeeeeC---cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-------ccc
Q 038045 37 PIQDPLSFEKG---FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-------SSR 105 (621)
Q Consensus 37 ~v~~~lsf~~G---~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-------~~R 105 (621)
...++++|.|. ...||+++||+|++|+ .|||+|+||||||||+++|.+++ |..|.|.+||..- .++
T Consensus 1077 I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge---~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~ 1153 (1321)
T 4f4c_A 1077 VIFKNVRFAYPERPEIEILKGLSFSVEPGQ---TLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRS 1153 (1321)
T ss_dssp EEEEEEEECCTTSCSSCSEEEEEEEECTTC---EEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHT
T ss_pred EEEEEEEEeCCCCCCCccccceeEEECCCC---EEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHh
Confidence 46788999884 3469999999999999 89999999999999999999999 9999999999732 346
Q ss_pred cccccCCCCcccccchHHHHHHHHhcCCC------------c-------cCc-cccccc----cCccCCceeecCCccEE
Q 038045 106 VVDGNFDDPRLTDYDTLLENVRDLREGKP------------V-------QVP-IYDFES----SSRTGYRTVEVPSSRIV 161 (621)
Q Consensus 106 ~Ig~vfQdp~l~d~~tV~enL~~L~~gk~------------V-------~~p-~yd~~~----~~rsggq~qrVa~ArVL 161 (621)
.+++++|+|.+|+ .|+++||.+...... . ..| .||... ..+||||+|++++||++
T Consensus 1154 ~i~~V~Qdp~LF~-gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAl 1232 (1321)
T 4f4c_A 1154 QIAIVSQEPTLFD-CSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARAL 1232 (1321)
T ss_dssp TEEEECSSCCCCS-EEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHH
T ss_pred heEEECCCCEeeC-ccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHH
Confidence 7999999999986 499999865321110 0 112 244333 35799999999999999
Q ss_pred EEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCc
Q 038045 162 IIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQT 241 (621)
Q Consensus 162 IvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~ 241 (621)
+-++.++++||+++.+|.. ..+.+.+..+.. ..|+|++.|.|++... .-+|++.+|++|.+.+.+++
T Consensus 1233 lr~~~ILiLDEaTSaLD~~-------tE~~Iq~~l~~~-~~~~TvI~IAHRLsTi-----~~aD~I~Vld~G~IvE~Gth 1299 (1321)
T 4f4c_A 1233 VRNPKILLLDEATSALDTE-------SEKVVQEALDRA-REGRTCIVIAHRLNTV-----MNADCIAVVSNGTIIEKGTH 1299 (1321)
T ss_dssp HSCCSEEEEESCCCSTTSH-------HHHHHHHHHTTT-SSSSEEEEECSSSSTT-----TTCSEEEEESSSSEEEEECH
T ss_pred HhCCCEEEEeCccccCCHH-------HHHHHHHHHHHH-cCCCEEEEeccCHHHH-----HhCCEEEEEECCEEEEECCH
Confidence 9999999999999999962 233444333322 2489999999997654 45789999999999999999
Q ss_pred eeEE
Q 038045 242 YDIY 245 (621)
Q Consensus 242 aDIY 245 (621)
.++.
T Consensus 1300 ~eLl 1303 (1321)
T 4f4c_A 1300 TQLM 1303 (1321)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9883
No 46
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.78 E-value=1e-19 Score=202.16 Aligned_cols=175 Identities=19% Similarity=0.237 Sum_probs=137.8
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccccccccccCCCCc
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDSSRVVDGNFDDPR 115 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~~R~Ig~vfQdp~ 115 (621)
...+++++.++.. .+++++|++.+|+ ++||+||||||||||+++|+|++ |..|.|.+ ...++|++|++.
T Consensus 288 l~~~~l~~~~~~~-~l~~~~~~i~~Ge---~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~------~~~i~~v~Q~~~ 357 (538)
T 1yqt_A 288 VTYPRLVKDYGSF-RLEVEPGEIKKGE---VIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW------DLTVAYKPQYIK 357 (538)
T ss_dssp EEECCEEEEETTE-EEEECCEEEETTC---EEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC------CCCEEEECSSCC
T ss_pred EEEeeEEEEECCE-EEEeCccccCCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE------CceEEEEecCCc
Confidence 3456788877764 6899999999999 99999999999999999999999 88999876 246899999988
Q ss_pred ccccchHHHHHHHH-hc--C---------CCccC-ccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEE
Q 038045 116 LTDYDTLLENVRDL-RE--G---------KPVQV-PIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVS 182 (621)
Q Consensus 116 l~d~~tV~enL~~L-~~--g---------k~V~~-p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~ 182 (621)
.++..++.+++... .. . +.+.+ +..+.....+|||++|++..+++++.+|.++++|||++.||+.
T Consensus 358 ~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~-- 435 (538)
T 1yqt_A 358 ADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVE-- 435 (538)
T ss_dssp CCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHH--
T ss_pred CCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHH--
Confidence 77778888887654 10 0 11122 2234556889999999999999999999999999999999973
Q ss_pred ecCCchHHHHHHHHHHH-HHcCCCceehHhHHHHHhccccccchhhhcCCC
Q 038045 183 VTGGVHFDLVKRVLRDI-QRVGQEPEEIIQQISETSAKNLSVDQIKAVYPE 232 (621)
Q Consensus 183 Vd~~~d~~LirRI~Rdl-~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~e 232 (621)
....+.++.+.+ .+.|.|++.|+|+++.+. .++|++.++..
T Consensus 436 -----~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~----~~~drv~vl~~ 477 (538)
T 1yqt_A 436 -----QRLAVSRAIRHLMEKNEKTALVVEHDVLMID----YVSDRLMVFEG 477 (538)
T ss_dssp -----HHHHHHHHHHHHHHHHTCEEEEECSCHHHHH----HHCSEEEEEEE
T ss_pred -----HHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH----HhCCEEEEEeC
Confidence 233444444444 356999999999999887 66777777763
No 47
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=99.77 E-value=1.4e-19 Score=189.55 Aligned_cols=217 Identities=18% Similarity=0.230 Sum_probs=166.0
Q ss_pred eeecceeeeeCcEEEEeecceEEeCC---CcceEEEEECCCCCcHHHHHHHHHhhCC------CeeEEEECCcccccc--
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKN---DGIILIGLAGPSGAGKTIFTEKILNFMP------SIAVISMDNYNDSSR-- 105 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~G---e~~iIVGI~GpSGSGKSTLlr~LagLlP------~sGvI~lDg~~~~~R-- 105 (621)
++.+.+++.++.+.++++++..+..+ .++++|||+||||||||||+++|++++. ..+.|.+|+|+....
T Consensus 61 pl~rll~~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~~~~l 140 (321)
T 3tqc_A 61 PLSRLLSFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSNAKL 140 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHH
T ss_pred HHHHHHHHhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccchhhh
Confidence 44555666667777777777766544 4688999999999999999999999872 366799999864321
Q ss_pred ---cccccCCCCcccccchHHHHHHHHhcCC-CccCccccccccCccCCceeecCCccEEEEecceecccc---------
Q 038045 106 ---VVDGNFDDPRLTDYDTLLENVRDLREGK-PVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEK--------- 172 (621)
Q Consensus 106 ---~Ig~vfQdp~l~d~~tV~enL~~L~~gk-~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDE--------- 172 (621)
.....++.|..|+...+.+.+..++.++ .+..|.|++..+.+.++....+..++++|+||.+++.++
T Consensus 141 ~~~~~~~~~g~P~~~D~~~l~~~L~~L~~g~~~v~~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~~~~~~~~~~ 220 (321)
T 3tqc_A 141 EKQGLMKRKGFPESYDMPSLLRVLNAIKSGQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTGVRKTLQQLQ 220 (321)
T ss_dssp HHTTCGGGTTSGGGBCHHHHHHHHHHHHTTCSSEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCCCSSSSSCC
T ss_pred hhHHHHhhccCcccccHHHHHHHHHhhhccccccccchhhhhccccccCceeeccCCCEEEEEccccccccccccccchh
Confidence 1122456688899999999999999888 899999999988877666667788999999999999876
Q ss_pred --ccCCCCeeEEecCCchHHHHHHHHHHHHHcC---CCceehHhHHHHHh-----cccc-ccchhhhcCCCCceeeccCc
Q 038045 173 --LRPLLDLRVSVTGGVHFDLVKRVLRDIQRVG---QEPEEIIQQISETS-----AKNL-SVDQIKAVYPEGHTETMEQT 241 (621)
Q Consensus 173 --p~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG---~Ti~~VtHd~eea~-----~R~v-~~~d~iavl~eg~Ie~~~~~ 241 (621)
....+|.+|||+++.+.++.|++.|+...+| ..+..+.|+|.... .+.. .|..+..+..+.+|.|++..
T Consensus 221 ~~l~~~~D~~I~Vda~~d~~~~R~i~Rd~~~r~~a~~~~~s~~~~y~~~s~~ea~~~a~~~w~~~~~pn~~~~I~ptr~~ 300 (321)
T 3tqc_A 221 VFVSDFFDFSLFVDAQAQVIQKWYIDRVLSFWRTTFKDPHSYFHYLTQMSETEVAAFAKHVWNEINKVNLMENILPYKNR 300 (321)
T ss_dssp CCGGGGCSEEEEEECCHHHHHHHHHHHHHHHHHTGGGSTTSTTGGGGGSCHHHHHHHHHHHHHHTHHHHHHHHTGGGGGG
T ss_pred hhhhhhcCeEEEEECCHHHHHHHHHHhcchhhhhhccChHHHHHHHhcCCHHHHHHHHHHHHHhccccCHHHhCccCccC
Confidence 6789999999999999999999999988776 45666666664221 0000 12334445667789999999
Q ss_pred eeEEecCCCCCcc
Q 038045 242 YDIYLLPPGEDPE 254 (621)
Q Consensus 242 aDIYi~P~~~~~e 254 (621)
||+ ++|.+.++.
T Consensus 301 Adl-il~~g~~~~ 312 (321)
T 3tqc_A 301 AQL-ILEKAADHS 312 (321)
T ss_dssp CSE-EEEECTTSC
T ss_pred ceE-EEecCCCCc
Confidence 999 677777653
No 48
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.77 E-value=1.5e-20 Score=227.19 Aligned_cols=191 Identities=17% Similarity=0.228 Sum_probs=151.9
Q ss_pred eeecceeeeeCc---EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-------ccc
Q 038045 37 PIQDPLSFEKGF---FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-------SSR 105 (621)
Q Consensus 37 ~v~~~lsf~~G~---~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-------~~R 105 (621)
...++++|.|+. ..+|+++||++++|+ ++||+||||||||||+++|.|++ |..|.|.+||... .++
T Consensus 1031 i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge---~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~ 1107 (1284)
T 3g5u_A 1031 VQFSGVVFNYPTRPSIPVLQGLSLEVKKGQ---TLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRA 1107 (1284)
T ss_dssp EEEEEEEBCCSCGGGCCSBSSCCEEECSSS---EEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTT
T ss_pred EEEEEEEEECCCCCCCeeecceeEEEcCCC---EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHh
Confidence 456788888853 369999999999999 99999999999999999999999 9999999999732 245
Q ss_pred cccccCCCCcccccchHHHHHHHHhcCCC-------------------ccCc-ccccc----ccCccCCceeecCCccEE
Q 038045 106 VVDGNFDDPRLTDYDTLLENVRDLREGKP-------------------VQVP-IYDFE----SSSRTGYRTVEVPSSRIV 161 (621)
Q Consensus 106 ~Ig~vfQdp~l~d~~tV~enL~~L~~gk~-------------------V~~p-~yd~~----~~~rsggq~qrVa~ArVL 161 (621)
.+++++|+|.+|+ .|+++|+........ -..| .|+.. ...+||||+|+++.||++
T Consensus 1108 ~i~~v~Q~~~l~~-~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal 1186 (1284)
T 3g5u_A 1108 QLGIVSQEPILFD-CSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARAL 1186 (1284)
T ss_dssp SCEEEESSCCCCS-SBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHH
T ss_pred ceEEECCCCcccc-ccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHH
Confidence 7999999998875 699999965321100 0111 23322 246899999999999999
Q ss_pred EEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCc
Q 038045 162 IIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQT 241 (621)
Q Consensus 162 IvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~ 241 (621)
+.+|.++++|||++.+|.. ..+.+.+..+.. ..|.|++.|+|+++... .+|++.+|++|.+...+++
T Consensus 1187 ~~~p~iLiLDEpTs~lD~~-------~~~~i~~~l~~~-~~~~tvi~isH~l~~i~-----~~dri~vl~~G~i~~~g~~ 1253 (1284)
T 3g5u_A 1187 VRQPHILLLDEATSALDTE-------SEKVVQEALDKA-REGRTCIVIAHRLSTIQ-----NADLIVVIQNGKVKEHGTH 1253 (1284)
T ss_dssp HHCCSSEEEESCSSSCCHH-------HHHHHHHHHHHH-SSSSCEEEECSCTTGGG-----SCSEEEEEETBEEEEEECH
T ss_pred HcCCCEEEEeCCcccCCHH-------HHHHHHHHHHHh-CCCCEEEEEecCHHHHH-----cCCEEEEEECCEEEEECCH
Confidence 9999999999999999972 234445555443 45899999999988653 3899999999999888888
Q ss_pred eeE
Q 038045 242 YDI 244 (621)
Q Consensus 242 aDI 244 (621)
.++
T Consensus 1254 ~~l 1256 (1284)
T 3g5u_A 1254 QQL 1256 (1284)
T ss_dssp HHH
T ss_pred HHH
Confidence 776
No 49
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.77 E-value=2.1e-19 Score=199.78 Aligned_cols=176 Identities=12% Similarity=0.136 Sum_probs=138.1
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccccccccccCCCCc
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDSSRVVDGNFDDPR 115 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~~R~Ig~vfQdp~ 115 (621)
...+++++.++.. .++.++|++++|+ ++||+||||||||||+++|+|++ |+.|.|.+++ +.+++++|++.
T Consensus 270 l~~~~l~~~~~~~-~l~~~~~~i~~Ge---i~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~-----~~i~~~~q~~~ 340 (538)
T 3ozx_A 270 MKWTKIIKKLGDF-QLVVDNGEAKEGE---IIGILGPNGIGKTTFARILVGEITADEGSVTPEK-----QILSYKPQRIF 340 (538)
T ss_dssp EEECCEEEEETTE-EEEECCEEEETTC---EEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC-----CCEEEECSSCC
T ss_pred EEEcceEEEECCE-EEEeccceECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-----eeeEeechhcc
Confidence 3456777777764 5788899999999 99999999999999999999999 8999998765 35788898876
Q ss_pred ccccchHHHHHHHHhcCC-------------CccC-ccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeE
Q 038045 116 LTDYDTLLENVRDLREGK-------------PVQV-PIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRV 181 (621)
Q Consensus 116 l~d~~tV~enL~~L~~gk-------------~V~~-p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV 181 (621)
.....++.+++....... .+.+ ...+..+..+|||++|++.+|++++.+|.++++|||++.||+.
T Consensus 341 ~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~- 419 (538)
T 3ozx_A 341 PNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVE- 419 (538)
T ss_dssp CCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHH-
T ss_pred cccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHH-
Confidence 666789999988643211 1111 1234557889999999999999999999999999999999973
Q ss_pred EecCCchHHHHHHHHHH-HHHcCCCceehHhHHHHHhccccccchhhhcCCC
Q 038045 182 SVTGGVHFDLVKRVLRD-IQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPE 232 (621)
Q Consensus 182 ~Vd~~~d~~LirRI~Rd-l~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~e 232 (621)
....+.++.+. .++.|.|++.|+|+++++. .+||++.+|..
T Consensus 420 ------~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~----~~aDri~vl~~ 461 (538)
T 3ozx_A 420 ------ERYIVAKAIKRVTRERKAVTFIIDHDLSIHD----YIADRIIVFKG 461 (538)
T ss_dssp ------HHHHHHHHHHHHHHHTTCEEEEECSCHHHHH----HHCSEEEEEEE
T ss_pred ------HHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH----HhCCEEEEEeC
Confidence 22333444444 3456999999999999887 67787777764
No 50
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.77 E-value=1.1e-19 Score=204.77 Aligned_cols=174 Identities=18% Similarity=0.229 Sum_probs=137.2
Q ss_pred eeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccccccccccCCCCc
Q 038045 37 PIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDSSRVVDGNFDDPR 115 (621)
Q Consensus 37 ~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~~R~Ig~vfQdp~ 115 (621)
...+++++.++.. .|++++|.+.+|+ ++||+||||||||||+++|+|++ |+.|.|.+ .+.++|+||++.
T Consensus 358 l~~~~l~~~~~~~-~l~~~~~~v~~Ge---i~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~------~~~i~~v~Q~~~ 427 (607)
T 3bk7_A 358 VEYPRLVKDYGSF-KLEVEPGEIRKGE---VIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW------DLTVAYKPQYIK 427 (607)
T ss_dssp EEECCEEEECSSC-EEEECCEEEETTC---EEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC------CCCEEEECSSCC
T ss_pred EEEeceEEEecce-EEEecccccCCCC---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEE------eeEEEEEecCcc
Confidence 3466788877764 6899999999999 99999999999999999999999 88998876 246999999988
Q ss_pred ccccchHHHHHHHH-hc---C--------CCccC-ccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEE
Q 038045 116 LTDYDTLLENVRDL-RE---G--------KPVQV-PIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVS 182 (621)
Q Consensus 116 l~d~~tV~enL~~L-~~---g--------k~V~~-p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~ 182 (621)
.+...|+.+++... .. . +.+.+ ...+.....+|||++|++.++++++.+|.++++|||++.||+.
T Consensus 428 ~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~-- 505 (607)
T 3bk7_A 428 AEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVE-- 505 (607)
T ss_dssp CCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHH--
T ss_pred CCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHH--
Confidence 77778888887654 10 0 01111 2345557889999999999999999999999999999999973
Q ss_pred ecCCchHHHHHHHHHHH-HHcCCCceehHhHHHHHhccccccchhhhcCC
Q 038045 183 VTGGVHFDLVKRVLRDI-QRVGQEPEEIIQQISETSAKNLSVDQIKAVYP 231 (621)
Q Consensus 183 Vd~~~d~~LirRI~Rdl-~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~ 231 (621)
....+.++.+.+ .+.|.|++.|+|++..+. .++|++.++.
T Consensus 506 -----~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~----~~adrv~vl~ 546 (607)
T 3bk7_A 506 -----QRLAVSRAIRHLMEKNEKTALVVEHDVLMID----YVSDRLIVFE 546 (607)
T ss_dssp -----HHHHHHHHHHHHHHHTTCEEEEECSCHHHHH----HHCSEEEEEE
T ss_pred -----HHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH----HhCCEEEEEc
Confidence 233444444444 456999999999998886 6677777775
No 51
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.76 E-value=8.2e-20 Score=221.26 Aligned_cols=191 Identities=17% Similarity=0.231 Sum_probs=152.8
Q ss_pred eeecceeeeeC---cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-------ccc
Q 038045 37 PIQDPLSFEKG---FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-------SSR 105 (621)
Q Consensus 37 ~v~~~lsf~~G---~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-------~~R 105 (621)
...++++|.|. ...+|+++||++++|+ .++|+||||||||||++.|.|++ |..|.|.+||... .++
T Consensus 416 I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~---~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~ 492 (1321)
T 4f4c_A 416 ITVENVHFTYPSRPDVPILRGMNLRVNAGQ---TVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRK 492 (1321)
T ss_dssp EEEEEEEECCSSSTTSCSEEEEEEEECTTC---EEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHH
T ss_pred EEEEEeeeeCCCCCCCceeeceEEeecCCc---EEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhh
Confidence 46788999874 4679999999999999 99999999999999999999999 9999999999732 235
Q ss_pred cccccCCCCcccccchHHHHHHHHhcCCC----------c-------cCc-ccccc----ccCccCCceeecCCccEEEE
Q 038045 106 VVDGNFDDPRLTDYDTLLENVRDLREGKP----------V-------QVP-IYDFE----SSSRTGYRTVEVPSSRIVII 163 (621)
Q Consensus 106 ~Ig~vfQdp~l~d~~tV~enL~~L~~gk~----------V-------~~p-~yd~~----~~~rsggq~qrVa~ArVLIv 163 (621)
.++|++|+|.+|+ .|+++||.+...... . .+| .|+-. -..+||||+||+++||+++-
T Consensus 493 ~i~~v~Q~~~Lf~-~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~ 571 (1321)
T 4f4c_A 493 NVAVVSQEPALFN-CTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVR 571 (1321)
T ss_dssp HEEEECSSCCCCS-EEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTT
T ss_pred cccccCCcceeeC-CchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHcc
Confidence 7999999999885 599999986542210 0 112 12322 24678999999999999999
Q ss_pred ecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCcee
Q 038045 164 EGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYD 243 (621)
Q Consensus 164 EG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aD 243 (621)
++.++++|||++.+|.. . ...+.+..+.+ .+|+|.+.|+|++... ..+|++.+|++|.+...+++.+
T Consensus 572 ~~~IliLDE~tSaLD~~------t-e~~i~~~l~~~-~~~~T~iiiaHrls~i-----~~aD~Iivl~~G~ive~Gth~e 638 (1321)
T 4f4c_A 572 NPKILLLDEATSALDAE------S-EGIVQQALDKA-AKGRTTIIIAHRLSTI-----RNADLIISCKNGQVVEVGDHRA 638 (1321)
T ss_dssp CCSEEEEESTTTTSCTT------T-HHHHHHHHHHH-HTTSEEEEECSCTTTT-----TTCSEEEEEETTEEEEEECHHH
T ss_pred CCCEEEEecccccCCHH------H-HHHHHHHHHHH-hCCCEEEEEcccHHHH-----HhCCEEEEeeCCeeeccCCHHH
Confidence 99999999999999973 2 33444444433 3589999999997643 5688999999999999999888
Q ss_pred E
Q 038045 244 I 244 (621)
Q Consensus 244 I 244 (621)
+
T Consensus 639 L 639 (1321)
T 4f4c_A 639 L 639 (1321)
T ss_dssp H
T ss_pred H
Confidence 6
No 52
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.73 E-value=8.9e-19 Score=197.41 Aligned_cols=185 Identities=13% Similarity=0.066 Sum_probs=138.3
Q ss_pred cceeeeeCc-EEEEeecceEEeCC-----CcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccccccccccCC
Q 038045 40 DPLSFEKGF-FVVIRACQLLAQKN-----DGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDSSRVVDGNFD 112 (621)
Q Consensus 40 ~~lsf~~G~-~~~Lk~IsL~I~~G-----e~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~~R~Ig~vfQ 112 (621)
.+++|.++. ..++++++|++.+| + ++||+||||||||||+++|+|++ |+.|.. .....++|++|
T Consensus 350 ~~~~~~y~~~~~~l~~vsl~v~~G~~~~GE---iv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~~~~i~~~~q 420 (608)
T 3j16_B 350 ASRAFSYPSLKKTQGDFVLNVEEGEFSDSE---ILVMMGENGTGKTTLIKLLAGALKPDEGQD------IPKLNVSMKPQ 420 (608)
T ss_dssp SSSCCEECCEEEECSSCEEEECCEECCTTC---EEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CCSCCEEEECS
T ss_pred cceeEEecCcccccCceEEEEecCccccce---EEEEECCCCCcHHHHHHHHhcCCCCCCCcC------ccCCcEEEecc
Confidence 345565543 46889999999998 6 89999999999999999999999 888852 12346889999
Q ss_pred CCcccccchHHHHHHHHhcCCC------------ccC-ccccccccCccCCceeecCCccEEEEecceeccccccCCCCe
Q 038045 113 DPRLTDYDTLLENVRDLREGKP------------VQV-PIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDL 179 (621)
Q Consensus 113 dp~l~d~~tV~enL~~L~~gk~------------V~~-p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDl 179 (621)
++......++.+++........ +.+ ...+..+.++|||++|++.+|++++.+|.++++|||++.||+
T Consensus 421 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~ 500 (608)
T 3j16_B 421 KIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDS 500 (608)
T ss_dssp SCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCH
T ss_pred cccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCH
Confidence 8776556688887754221110 111 123456789999999999999999999999999999999997
Q ss_pred eEEecCCchHHHHHHHHHH-HHHcCCCceehHhHHHHHhccccccchhhhcCCC--CceeeccCceeE
Q 038045 180 RVSVTGGVHFDLVKRVLRD-IQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPE--GHTETMEQTYDI 244 (621)
Q Consensus 180 kV~Vd~~~d~~LirRI~Rd-l~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~e--g~Ie~~~~~aDI 244 (621)
. ....+.++.+. ..+.|.|++.|+|+++++. .++|++.++.. +.+...+.+.++
T Consensus 501 ~-------~~~~i~~ll~~l~~~~g~tviivtHdl~~~~----~~aDrvivl~~~~g~~~~~g~p~~~ 557 (608)
T 3j16_B 501 E-------QRIICSKVIRRFILHNKKTAFIVEHDFIMAT----YLADKVIVFEGIPSKNAHARAPESL 557 (608)
T ss_dssp H-------HHHHHHHHHHHHHHHHTCEEEEECSCHHHHH----HHCSEEEECEEETTTEEECCCCEEH
T ss_pred H-------HHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH----HhCCEEEEEeCCCCeEEecCChHHH
Confidence 3 22333344444 4567999999999999987 67788888874 566666666665
No 53
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.73 E-value=2.3e-19 Score=199.37 Aligned_cols=178 Identities=13% Similarity=0.177 Sum_probs=129.8
Q ss_pred ecceeeeeCcE-EEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEE---------EECCccc-----
Q 038045 39 QDPLSFEKGFF-VVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVI---------SMDNYND----- 102 (621)
Q Consensus 39 ~~~lsf~~G~~-~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI---------~lDg~~~----- 102 (621)
.+++++.||.. .+++++| .+++|+ ++||+||||||||||+++|+|++ |+.|.+ .++|...
T Consensus 24 ~~~ls~~yg~~~~~l~~vs-~i~~Ge---~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~ 99 (538)
T 1yqt_A 24 EEDCVHRYGVNAFVLYRLP-VVKEGM---VVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFE 99 (538)
T ss_dssp CCCEEEECSTTCCEEECCC-CCCTTS---EEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHH
T ss_pred hcCcEEEECCccccccCcC-cCCCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHH
Confidence 45788888875 5899999 999999 99999999999999999999999 888875 3455311
Q ss_pred ----ccccccccCCCCccccc---chHHHHHHHHhcCC-------CccC-ccccccccCccCCceeecCCccEEEEecce
Q 038045 103 ----SSRVVDGNFDDPRLTDY---DTLLENVRDLREGK-------PVQV-PIYDFESSSRTGYRTVEVPSSRIVIIEGIY 167 (621)
Q Consensus 103 ----~~R~Ig~vfQdp~l~d~---~tV~enL~~L~~gk-------~V~~-p~yd~~~~~rsggq~qrVa~ArVLIvEG~l 167 (621)
....+++++|+...++. .++.+++....... .+.+ ...+....++|+|++|++.++++++.+|.+
T Consensus 100 ~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~l 179 (538)
T 1yqt_A 100 KLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATF 179 (538)
T ss_dssp HHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSE
T ss_pred HHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 11246677776544332 26777764321110 0111 123556788999999999999999999999
Q ss_pred eccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCC
Q 038045 168 ALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYP 231 (621)
Q Consensus 168 LLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~ 231 (621)
+++|||++.||+. ....+.++.+.+.+.|.|++.|+|++..+. .++|++.++.
T Consensus 180 LlLDEPTs~LD~~-------~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~----~~~dri~vl~ 232 (538)
T 1yqt_A 180 YFFDEPSSYLDIR-------QRLNAARAIRRLSEEGKSVLVVEHDLAVLD----YLSDIIHVVY 232 (538)
T ss_dssp EEEESTTTTCCHH-------HHHHHHHHHHHHHHTTCEEEEECSCHHHHH----HHCSEEEEEE
T ss_pred EEEECCcccCCHH-------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHH----HhCCEEEEEc
Confidence 9999999999973 234445555555567999999999998775 5556555554
No 54
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.73 E-value=3.6e-18 Score=165.57 Aligned_cols=171 Identities=18% Similarity=0.241 Sum_probs=129.5
Q ss_pred eCCCcceEEEEECCCCCcHHHHHHHHHhhC-C---CeeEEEECCccccc---cccccc--CCCCcccccchHHHHHHHHh
Q 038045 60 QKNDGIILIGLAGPSGAGKTIFTEKILNFM-P---SIAVISMDNYNDSS---RVVDGN--FDDPRLTDYDTLLENVRDLR 130 (621)
Q Consensus 60 ~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P---~sGvI~lDg~~~~~---R~Ig~v--fQdp~l~d~~tV~enL~~L~ 130 (621)
++|+ +|||+||||||||||+++|++++ | ..|.|.+||++... ...+.. ...+..++...+.+.+..+.
T Consensus 20 ~~g~---~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 96 (208)
T 3c8u_A 20 PGRQ---LVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLEPRGLLPRKGAPETFDFEGFQRLCHALK 96 (208)
T ss_dssp CSCE---EEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHHHGGGTCGGGTTSGGGBCHHHHHHHHHHHH
T ss_pred CCCe---EEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHHHHHhcccccCCCCchhhHHHHHHHHHHHh
Confidence 4567 99999999999999999999998 4 48999999985432 112211 22344566666677777777
Q ss_pred cCCCccCccccccccCccCCceeecCCc-cEEEEecceeccccc-----cCCCCeeEEecCCchHHHHHHHHHHHHHcCC
Q 038045 131 EGKPVQVPIYDFESSSRTGYRTVEVPSS-RIVIIEGIYALSEKL-----RPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQ 204 (621)
Q Consensus 131 ~gk~V~~p~yd~~~~~rsggq~qrVa~A-rVLIvEG~lLLlDEp-----~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~ 204 (621)
.++.+..|.|++..+. ++++.++++.+ +++++||.+++.||+ ...+|.++|++++.+.++.|.+.|. .++|.
T Consensus 97 ~~~~i~~p~~d~~~~~-~~g~~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~vd~~~~~~~~R~~~R~-~~~g~ 174 (208)
T 3c8u_A 97 HQERVIYPLFDRARDI-AIAGAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIRLEVPMADLEARLVQRW-LDHGL 174 (208)
T ss_dssp HCSCEEEEEEETTTTE-EEEEEEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSEEEEECCCHHHHHHHHHHHH-HHTTC
T ss_pred cCCceecccCCccccC-CCCCceEEcCCCcEEEECCceeccCCchhHHHHHhcCEEEEEeCCHHHHHHHHHHHH-HhcCC
Confidence 7888888999987654 56688899987 999999999988764 6789999999999888776666664 46799
Q ss_pred CceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEEe
Q 038045 205 EPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIYL 246 (621)
Q Consensus 205 Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIYi 246 (621)
|.+.+.|.+.... . .+. .++++....+|+++
T Consensus 175 t~~~~~~~~~~~~----~------~~~-~~i~~~~~~aD~vi 205 (208)
T 3c8u_A 175 NHDAAVARAQGND----L------ANA-RAIEAARLPADLTW 205 (208)
T ss_dssp CHHHHHHHHHTHH----H------HHH-HHHHTTBCCCSEEE
T ss_pred CHHHHHHHHHhcc----H------HHH-HHHHhCCCCCCEEe
Confidence 9999999887432 1 112 46777788888843
No 55
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.73 E-value=4.9e-18 Score=163.37 Aligned_cols=177 Identities=29% Similarity=0.493 Sum_probs=132.1
Q ss_pred eCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc-c-----ccccccCCCCcccccchHHHHHHHHhcC
Q 038045 60 QKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS-S-----RVVDGNFDDPRLTDYDTLLENVRDLREG 132 (621)
Q Consensus 60 ~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~-~-----R~Ig~vfQdp~l~d~~tV~enL~~L~~g 132 (621)
++|+ +|||+||||||||||+++|++++ |..+.|..|.+... . ....+.++.+..++...+.+.+..+...
T Consensus 4 ~~~~---~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 80 (211)
T 3asz_A 4 PKPF---VIGIAGGTASGKTTLAQALARTLGERVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEHAQALLRG 80 (211)
T ss_dssp -CCE---EEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHHHHHHHTT
T ss_pred CCcE---EEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHHHHHHHcC
Confidence 4566 99999999999999999999998 45788888876431 1 1233445556666666777777777666
Q ss_pred CCccCccccccccCccCCceeecCCccEEEEecceeccccccC-CCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHh
Q 038045 133 KPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRP-LLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQ 211 (621)
Q Consensus 133 k~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s-~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtH 211 (621)
..+..|.++...+.+.. +.+++..++++++||.+++.|||+. .+|.++++|++.+.++.+++.|+..++|.|++.++|
T Consensus 81 ~~~~~~~~~~s~g~~~~-~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~ 159 (211)
T 3asz_A 81 LPVEMPVYDFRAYTRSP-RRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVA 159 (211)
T ss_dssp CCEEECCEETTTTEECS-SCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred CCcCCCcccCcccCCCC-CeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 66666777766554433 4567888999999999999998764 689999999999999999999888888999999999
Q ss_pred HHHHHhccccccchhhhcCCCCceeeccCceeEEecCCCC
Q 038045 212 QISETSAKNLSVDQIKAVYPEGHTETMEQTYDIYLLPPGE 251 (621)
Q Consensus 212 d~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIYi~P~~~ 251 (621)
++.... . ..+..++++....+|++ ++.+.
T Consensus 160 ~~~~~~----~------~~~~~~~~~~~~~aD~i-i~~~~ 188 (211)
T 3asz_A 160 QYLEQV----K------PMHLHFVEPTKRYADVI-VPRGG 188 (211)
T ss_dssp HHHHTH----H------HHHHHTTGGGGGGCSEE-EESTT
T ss_pred HHHHhh----h------hhHHHhcccchhcCeEE-EeCCC
Confidence 987654 1 13334556667788884 44443
No 56
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.72 E-value=5.2e-19 Score=200.48 Aligned_cols=182 Identities=12% Similarity=0.073 Sum_probs=119.8
Q ss_pred cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHH---------------------HHHHhhC-CC-------eeEEEEC
Q 038045 48 FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFT---------------------EKILNFM-PS-------IAVISMD 98 (621)
Q Consensus 48 ~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLl---------------------r~LagLl-P~-------sGvI~lD 98 (621)
...+|++|||++++|+ ++||+||||||||||+ +++.++. |+ .+.|.++
T Consensus 30 ~~~~L~~vsl~i~~Ge---~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~ 106 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGK---LVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISID 106 (670)
T ss_dssp CSTTCCSEEEEEETTS---EEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEES
T ss_pred CccceeccEEEECCCC---EEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEec
Confidence 3457999999999999 9999999999999998 7777777 76 4455566
Q ss_pred Cccc---ccccccccCCCCcc-------------------cccchHHHHHHHHhcC------CC----------------
Q 038045 99 NYND---SSRVVDGNFDDPRL-------------------TDYDTLLENVRDLREG------KP---------------- 134 (621)
Q Consensus 99 g~~~---~~R~Ig~vfQdp~l-------------------~d~~tV~enL~~L~~g------k~---------------- 134 (621)
+... ..+.+++++|.+.. ++.+++.+|+.+.... ..
T Consensus 107 ~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 186 (670)
T 3ux8_A 107 QKTTSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFL 186 (670)
T ss_dssp SCC-----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHH
T ss_pred CchhhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHH
Confidence 5421 23456777775543 3456788887653210 00
Q ss_pred --ccCc--cccccccCccCCceeecCCccEEEEecc--eeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCcee
Q 038045 135 --VQVP--IYDFESSSRTGYRTVEVPSSRIVIIEGI--YALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEE 208 (621)
Q Consensus 135 --V~~p--~yd~~~~~rsggq~qrVa~ArVLIvEG~--lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~ 208 (621)
+.+. ..+....++|||++|++.+|++++.+|. ++++|||++.||+. ....+..+.+.+.+.|.|++.
T Consensus 187 ~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~-------~~~~l~~~l~~l~~~g~tvi~ 259 (670)
T 3ux8_A 187 QNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQR-------DNDRLIATLKSMRDLGNTLIV 259 (670)
T ss_dssp HHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGG-------GHHHHHHHHHHHHHTTCEEEE
T ss_pred HHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHH-------HHHHHHHHHHHHHHcCCEEEE
Confidence 1111 1245678899999999999999999988 99999999999973 345556666666777999999
Q ss_pred hHhHHHHHhccccccchhhhcC------CCCceeeccCceeE
Q 038045 209 IIQQISETSAKNLSVDQIKAVY------PEGHTETMEQTYDI 244 (621)
Q Consensus 209 VtHd~eea~~R~v~~~d~iavl------~eg~Ie~~~~~aDI 244 (621)
|+|++..+. .+|++.++ +.|.+...+++.++
T Consensus 260 vtHd~~~~~-----~~d~ii~l~~g~~~~~G~i~~~g~~~~~ 296 (670)
T 3ux8_A 260 VEHDEDTML-----AADYLIDIGPGAGIHGGEVVAAGTPEEV 296 (670)
T ss_dssp ECCCHHHHH-----HCSEEEEECSSSGGGCCSEEEEECHHHH
T ss_pred EeCCHHHHh-----hCCEEEEecccccccCCEEEEecCHHHH
Confidence 999998653 37777777 77887777666665
No 57
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.72 E-value=1.9e-18 Score=178.39 Aligned_cols=200 Identities=14% Similarity=0.164 Sum_probs=141.5
Q ss_pred cceeeeeCcEEEEeecceEE-------------------eCCCcceEEEEECCCCCcHHHHHHHHHhhC---CCeeEEEE
Q 038045 40 DPLSFEKGFFVVIRACQLLA-------------------QKNDGIILIGLAGPSGAGKTIFTEKILNFM---PSIAVISM 97 (621)
Q Consensus 40 ~~lsf~~G~~~~Lk~IsL~I-------------------~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl---P~sGvI~l 97 (621)
+++++.| ..+++++++.+ .+|+ +|||+||||||||||+++|++++ |..|.|.+
T Consensus 41 ~~v~~~y--~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~---iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~v 115 (308)
T 1sq5_A 41 EEVAEIY--LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPY---IISIAGSVAVGKSTTARVLQALLSRWPEHRRVEL 115 (308)
T ss_dssp HHHHHTH--HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCE---EEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred HhHHHHH--HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCE---EEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEE
Confidence 4444433 24677888777 5666 99999999999999999999975 56777777
Q ss_pred ---CCcccc---cccccccCCCCcccccchHHHHHHHHh---cCCC-ccCccccccccCccCCceeecCCccEEEEecce
Q 038045 98 ---DNYNDS---SRVVDGNFDDPRLTDYDTLLENVRDLR---EGKP-VQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIY 167 (621)
Q Consensus 98 ---Dg~~~~---~R~Ig~vfQdp~l~d~~tV~enL~~L~---~gk~-V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~l 167 (621)
||++.. .+.++++ |.+..++..++.+++..+. .+.. +..|.|++..+.+.......+...+++|+||.+
T Consensus 116 i~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~~~~~~~ivIlEG~~ 194 (308)
T 1sq5_A 116 ITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLVKFVSDLKSGVPNVTAPVYSHLIYDVIPDGDKTVVQPDILILEGLN 194 (308)
T ss_dssp EEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTCSCEEECCEETTTTEECTTCCEEEC-CCEEEEECTT
T ss_pred EecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHHHHHHHHhCCCCceecccccccccCcccccceecCCCCEEEECchh
Confidence 998532 2346777 7777778888888887643 4555 788999988776665444445567899999999
Q ss_pred eccc-----------cccCCCCeeEEecCCchHHHHHHHHHHHHH---------------cCCCceehHhHHHHHhcccc
Q 038045 168 ALSE-----------KLRPLLDLRVSVTGGVHFDLVKRVLRDIQR---------------VGQEPEEIIQQISETSAKNL 221 (621)
Q Consensus 168 LLlD-----------Ep~s~LDlkV~Vd~~~d~~LirRI~Rdl~e---------------rG~Ti~~VtHd~eea~~R~v 221 (621)
++.+ .+...+|.+|+|+++.+.++.|++.|+... .|+|.+.+...+.....
T Consensus 195 l~~~~~~~~~~~~~~~~~~~~D~~i~V~~~~~~~~~R~~~R~~~~r~~~~r~~~~~~~~~~g~s~e~a~~~i~~q~~--- 271 (308)
T 1sq5_A 195 VLQSGMDYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWYINRFLKFREGAFTDPDSYFHNYAKLTKEEAIKTAMTLWK--- 271 (308)
T ss_dssp TTCCGGGCTTSCCSSCGGGGCSEEEEEECCHHHHHHHHHHHHHHHHHTTTTCTTSTTHHHHTSCHHHHHHHHHHHHH---
T ss_pred hCCCccccccccchHHHHHhCCEEEEEECCHHHHHHHHHHHHHHHHHhhccCCchhhhcccCCCHHHHHHHHHHHHH---
Confidence 9887 577889999999999999888888887532 25555544433333221
Q ss_pred ccchhhhcCCCCceeeccCceeEEecCCCCC
Q 038045 222 SVDQIKAVYPEGHTETMEQTYDIYLLPPGED 252 (621)
Q Consensus 222 ~~~d~iavl~eg~Ie~~~~~aDIYi~P~~~~ 252 (621)
....++.+.++++....||++ ++++..
T Consensus 272 ---~~~~~~~~~~i~~~~~~AD~v-I~n~~~ 298 (308)
T 1sq5_A 272 ---EINWLNLKQNILPTRERASLI-LTKSAN 298 (308)
T ss_dssp ---HTHHHHHHHTTGGGGGGCSEE-EEECGG
T ss_pred ---hccHHHHHHHcccccccCcEE-EEeCCC
Confidence 112234455778888899984 555543
No 58
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.72 E-value=6.2e-19 Score=198.65 Aligned_cols=178 Identities=15% Similarity=0.179 Sum_probs=130.2
Q ss_pred cceeeeeCcE-EEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEE---------EECCccc------
Q 038045 40 DPLSFEKGFF-VVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVI---------SMDNYND------ 102 (621)
Q Consensus 40 ~~lsf~~G~~-~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI---------~lDg~~~------ 102 (621)
+++++.||.. .++++++ .+++|+ ++||+||||||||||+++|+|++ |+.|.+ .++|...
T Consensus 95 ~~ls~~yg~~~~~l~~vs-~i~~Ge---~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~ 170 (607)
T 3bk7_A 95 EDCVHRYGVNAFVLYRLP-IVKDGM---VVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFER 170 (607)
T ss_dssp GSEEEECSTTCCEEECCC-CCCTTS---EEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHH
T ss_pred CCeEEEECCCCeeeCCCC-CCCCCC---EEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhh
Confidence 6789998876 4999999 999999 99999999999999999999999 888875 3445311
Q ss_pred ---ccccccccCCCCccccc---chHHHHHHHHhcCC-------CccC-ccccccccCccCCceeecCCccEEEEeccee
Q 038045 103 ---SSRVVDGNFDDPRLTDY---DTLLENVRDLREGK-------PVQV-PIYDFESSSRTGYRTVEVPSSRIVIIEGIYA 168 (621)
Q Consensus 103 ---~~R~Ig~vfQdp~l~d~---~tV~enL~~L~~gk-------~V~~-p~yd~~~~~rsggq~qrVa~ArVLIvEG~lL 168 (621)
....+++++|+...++. .++.+++....... .+.+ ...+....++|||++|+++++++++.+|.++
T Consensus 171 ~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lL 250 (607)
T 3bk7_A 171 LKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFY 250 (607)
T ss_dssp HHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEE
T ss_pred hhhhhcceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 11245667776443221 27888775311110 1111 2245567889999999999999999999999
Q ss_pred ccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCC
Q 038045 169 LSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPE 232 (621)
Q Consensus 169 LlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~e 232 (621)
++|||++.||+. ....+.++.+.+.+.|.|++.|+|++..+. ..+|++.+++.
T Consensus 251 lLDEPTs~LD~~-------~~~~l~~~L~~l~~~g~tvIivsHdl~~~~----~~adri~vl~~ 303 (607)
T 3bk7_A 251 FFDEPSSYLDIR-------QRLKVARVIRRLANEGKAVLVVEHDLAVLD----YLSDVIHVVYG 303 (607)
T ss_dssp EEECTTTTCCHH-------HHHHHHHHHHHHHHTTCEEEEECSCHHHHH----HHCSEEEEEES
T ss_pred EEECCcccCCHH-------HHHHHHHHHHHHHhcCCEEEEEecChHHHH----hhCCEEEEECC
Confidence 999999999973 234445555555566999999999988775 45555555543
No 59
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.68 E-value=3.2e-18 Score=201.09 Aligned_cols=181 Identities=12% Similarity=0.047 Sum_probs=127.4
Q ss_pred eeecceeeeeCc--EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccccccccccCCC
Q 038045 37 PIQDPLSFEKGF--FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDSSRVVDGNFDD 113 (621)
Q Consensus 37 ~v~~~lsf~~G~--~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~~R~Ig~vfQd 113 (621)
.-.++++|.|+. ..+|+++||.+.+|+ ++||+||||||||||+++|+|++ |+.|.|.+++.. .++|++|+
T Consensus 672 L~v~nLs~~Y~g~~~~iL~dVSl~I~~Ge---ivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~~----~I~yv~Q~ 744 (986)
T 2iw3_A 672 VKVTNMEFQYPGTSKPQITDINFQCSLSS---RIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENC----RIAYIKQH 744 (986)
T ss_dssp EEEEEEEECCTTCSSCSEEEEEEEEETTC---EEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTTC----CEEEECHH
T ss_pred EEEEeeEEEeCCCCceeeeccEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCcc----ceEeeccc
Confidence 456788988864 578999999999999 99999999999999999999999 899999997520 12222222
Q ss_pred Cc------------------------------------------------------------------------------
Q 038045 114 PR------------------------------------------------------------------------------ 115 (621)
Q Consensus 114 p~------------------------------------------------------------------------------ 115 (621)
+.
T Consensus 745 ~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ 824 (986)
T 2iw3_A 745 AFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLG 824 (986)
T ss_dssp HHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred hhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhh
Confidence 10
Q ss_pred --------ccccchHHHHH---------------H------HHhcC--------------CCccCc-c--ccccccCccC
Q 038045 116 --------LTDYDTLLENV---------------R------DLREG--------------KPVQVP-I--YDFESSSRTG 149 (621)
Q Consensus 116 --------l~d~~tV~enL---------------~------~L~~g--------------k~V~~p-~--yd~~~~~rsg 149 (621)
.|+.+++.+|+ . ....+ ..+.+. . .+.....+||
T Consensus 825 ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~~~LSG 904 (986)
T 2iw3_A 825 ENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSG 904 (986)
T ss_dssp ESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCGGGCCH
T ss_pred hhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCccccCH
Confidence 01111111000 0 00000 001111 1 1334578999
Q ss_pred CceeecCCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhc
Q 038045 150 YRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAV 229 (621)
Q Consensus 150 gq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iav 229 (621)
|++|++.++++++.+|.++++|||++.||+ .....+.+.+.+.|.+++.++|+.+.+. ..+|++.+
T Consensus 905 GQkQRVaLArAL~~~P~LLLLDEPT~gLD~----------~s~~~L~~~L~~~g~tVIiISHD~e~v~----~l~DrViv 970 (986)
T 2iw3_A 905 GQKVKLVLAAGTWQRPHLIVLDEPTNYLDR----------DSLGALSKALKEFEGGVIIITHSAEFTK----NLTEEVWA 970 (986)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECGGGTCCH----------HHHHHHHHHHHSCSSEEEEECSCHHHHT----TTCCEEEC
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCccCCCH----------HHHHHHHHHHHHhCCEEEEEECCHHHHH----HhCCEEEE
Confidence 999999999999999999999999999996 2344555556666889999999999886 67777778
Q ss_pred CCCCceeec
Q 038045 230 YPEGHTETM 238 (621)
Q Consensus 230 l~eg~Ie~~ 238 (621)
+.+|.+...
T Consensus 971 L~~G~Iv~~ 979 (986)
T 2iw3_A 971 VKDGRMTPS 979 (986)
T ss_dssp CBTTBCCC-
T ss_pred EECCEEEEe
Confidence 887766543
No 60
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.67 E-value=1e-17 Score=196.78 Aligned_cols=184 Identities=16% Similarity=0.134 Sum_probs=134.9
Q ss_pred eeeecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCcccc-cccccccCCCC
Q 038045 36 VPIQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNYNDS-SRVVDGNFDDP 114 (621)
Q Consensus 36 ~~v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~~~~-~R~Ig~vfQdp 114 (621)
.....++++.||...+|+++||.+++|+ ++||+||||||||||+++|+| |.| +|+... ...++|++|++
T Consensus 435 ~L~~~~ls~~yg~~~iL~~vsl~I~~Ge---~v~LiGpNGsGKSTLLk~Lag-----G~i--~g~~~~~~~~~~~v~q~~ 504 (986)
T 2iw3_A 435 DLCNCEFSLAYGAKILLNKTQLRLKRAR---RYGICGPNGCGKSTLMRAIAN-----GQV--DGFPTQEECRTVYVEHDI 504 (986)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTC---EEEEECSTTSSHHHHHHHHHH-----TCS--TTCCCTTTSCEEETTCCC
T ss_pred eeEEeeEEEEECCEEeEecceEEEcCCC---EEEEECCCCCCHHHHHHHHhC-----CCc--CCCccccceeEEEEcccc
Confidence 3445589999999999999999999999 999999999999999999996 222 333211 12357888875
Q ss_pred -cccccchHHHHHHHHhcC---------CCccCc--cccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEE
Q 038045 115 -RLTDYDTLLENVRDLREG---------KPVQVP--IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVS 182 (621)
Q Consensus 115 -~l~d~~tV~enL~~L~~g---------k~V~~p--~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~ 182 (621)
.+++.+++.+++.....+ ..+.++ ..+.....+|||++|++.++++++.+|.++++|||++.||+.
T Consensus 505 ~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~-- 582 (986)
T 2iw3_A 505 DGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTV-- 582 (986)
T ss_dssp CCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHH--
T ss_pred cccccCCcHHHHHHHhhcCHHHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHH--
Confidence 567788999988641000 011221 234556789999999999999999999999999999999972
Q ss_pred ecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCcee-eccCcee
Q 038045 183 VTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTE-TMEQTYD 243 (621)
Q Consensus 183 Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie-~~~~~aD 243 (621)
....+..+. .+.|.|++.++|++.... .++|++.++.+|.+. ..+.+.+
T Consensus 583 -----~~~~l~~~L---~~~g~tvIivSHdl~~l~----~~adrii~L~~G~iv~~~G~~~e 632 (986)
T 2iw3_A 583 -----NVAWLVNYL---NTCGITSITISHDSVFLD----NVCEYIINYEGLKLRKYKGNFTE 632 (986)
T ss_dssp -----HHHHHHHHH---HHSCSEEEEECSCHHHHH----HHCSEEEEEETTEEEEEESCHHH
T ss_pred -----HHHHHHHHH---HhCCCEEEEEECCHHHHH----HhCCEEEEEECCeeecCCCCHHH
Confidence 223333333 336999999999998876 567777777777764 3344433
No 61
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.62 E-value=2e-16 Score=157.21 Aligned_cols=185 Identities=25% Similarity=0.415 Sum_probs=97.1
Q ss_pred eeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhCC---------CeeEEEECCccccc--c------c
Q 038045 44 FEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFMP---------SIAVISMDNYNDSS--R------V 106 (621)
Q Consensus 44 f~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP---------~sGvI~lDg~~~~~--R------~ 106 (621)
++.|.+.+|+++||++++|+ +|||+||||||||||+++|++++. ..+.+..|+++..- . .
T Consensus 7 ~~~~~~~~l~~isl~i~~g~---iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~~~l~~~~~~~~~~ 83 (245)
T 2jeo_A 7 HSSGVDLGTENLYFQSMRPF---LIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALK 83 (245)
T ss_dssp ----------------CCSE---EEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHT
T ss_pred ccCCCceeecceeccCCCCE---EEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCccccCHhHhhhhhc
Confidence 34577889999999999999 999999999999999999999762 12344444332110 0 0
Q ss_pred ccccCCCCcccccchHHHHHHHHhcCCCccCccccccccCccCCceeecCC------ccEEEEecceecc-ccccCCCCe
Q 038045 107 VDGNFDDPRLTDYDTLLENVRDLREGKPVQVPIYDFESSSRTGYRTVEVPS------SRIVIIEGIYALS-EKLRPLLDL 179 (621)
Q Consensus 107 Ig~vfQdp~l~d~~tV~enL~~L~~gk~V~~p~yd~~~~~rsggq~qrVa~------ArVLIvEG~lLLl-DEp~s~LDl 179 (621)
-.+.|.++..++...+.+.+..+....... ....++|+.+++.. .+++|+||..++. .++...+|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~-------~~~ls~g~~~r~~~~~~~~~~~~lilDg~~~~~~~~l~~~~~~ 156 (245)
T 2jeo_A 84 GQYNFDHPDAFDNDLMHRTLKNIVEGKTVE-------VPTYDFVTHSRLPETTVVYPADVVLFEGILVFYSQEIRDMFHL 156 (245)
T ss_dssp TCCCTTSGGGBCHHHHHHHHHHHHTTCCEE-------ECCEETTTTEECSSCEEECCCSEEEEECTTTTTSHHHHTTCSE
T ss_pred cCCCCCCcccccHHHHHHHHHHHHCCCCee-------cccccccccCccCceEEecCCCEEEEeCccccccHHHHHhcCe
Confidence 012333333333333444444333222222 23344555555433 4566666644443 334445799
Q ss_pred eEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEEecCCC
Q 038045 180 RVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIYLLPPG 250 (621)
Q Consensus 180 kV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIYi~P~~ 250 (621)
+++++++.+.++.+++.|+. +.|.+.+.+..+|.... .+ ..+.+++|....+|++ +|..
T Consensus 157 ~i~v~th~~~~~~r~~~r~~-~~G~~~e~~~~~~~~~~----~~------~~~~~i~p~~~~aD~v-i~~~ 215 (245)
T 2jeo_A 157 RLFVDTDSDVRLSRRVLRDV-RRGRDLEQILTQYTTFV----KP------AFEEFCLPTKKYADVI-IPRG 215 (245)
T ss_dssp EEEEECCHHHHHHHHHHHHT-C---CHHHHHHHHHHTH----HH------HHHHHTGGGGGGCSEE-EESS
T ss_pred EEEEECCHHHHHHHHHHHHH-HcCCCHHHHHHHHHHhh----hH------hHHHhCCcchhcceEE-EcCC
Confidence 99999998888888888876 66888888887766432 11 2233456677888884 4444
No 62
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.62 E-value=3.6e-17 Score=185.38 Aligned_cols=92 Identities=9% Similarity=0.047 Sum_probs=75.6
Q ss_pred cccccCccCCceeecCCccEEEEec---ceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHh
Q 038045 141 DFESSSRTGYRTVEVPSSRIVIIEG---IYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETS 217 (621)
Q Consensus 141 d~~~~~rsggq~qrVa~ArVLIvEG---~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~ 217 (621)
+....++|||++|++++|++++.+| .++++|||++.||+. ....+..+.+.+.+.|.|++.|+|++..+
T Consensus 538 ~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~-------~~~~i~~~l~~l~~~g~tvi~vtHd~~~~- 609 (670)
T 3ux8_A 538 GQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVD-------DIARLLDVLHRLVDNGDTVLVIEHNLDVI- 609 (670)
T ss_dssp TCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHH-------HHHHHHHHHHHHHHTTCEEEEECCCHHHH-
T ss_pred cCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHH-------HHHHHHHHHHHHHHCCCEEEEEeCCHHHH-
Confidence 4567889999999999999999887 499999999999973 34455556666667799999999999865
Q ss_pred ccccccchhhhcC------CCCceeeccCceeE
Q 038045 218 AKNLSVDQIKAVY------PEGHTETMEQTYDI 244 (621)
Q Consensus 218 ~R~v~~~d~iavl------~eg~Ie~~~~~aDI 244 (621)
..+|++.+| +.|.+...+++.++
T Consensus 610 ----~~~d~i~~l~~~~g~~~G~i~~~g~~~~~ 638 (670)
T 3ux8_A 610 ----KTADYIIDLGPEGGDRGGQIVAVGTPEEV 638 (670)
T ss_dssp ----TTCSEEEEEESSSGGGCCEEEEEECHHHH
T ss_pred ----HhCCEEEEecCCcCCCCCEEEEecCHHHH
Confidence 348888888 78999888888776
No 63
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.56 E-value=9e-18 Score=183.56 Aligned_cols=170 Identities=9% Similarity=-0.015 Sum_probs=124.8
Q ss_pred ecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCee-E-EEECCcccccccccccCCCCc
Q 038045 39 QDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIA-V-ISMDNYNDSSRVVDGNFDDPR 115 (621)
Q Consensus 39 ~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sG-v-I~lDg~~~~~R~Ig~vfQdp~ 115 (621)
.++++|.++ +++|.+++|+ +++|+||||||||||+|+|+|++ |..| . |.+|+ +.++.++++||++.
T Consensus 121 ~~nl~~~y~------~vsl~i~~Ge---~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg--~~~~~i~~vpq~~~ 189 (460)
T 2npi_A 121 IYNLHFMLE------KIRMSNFEGP---RVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL--DPQQPIFTVPGCIS 189 (460)
T ss_dssp HHHHHHHHH------HHHHHSSSCC---CEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC--CTTSCSSSCSSCCE
T ss_pred hhhhhehhh------cCceEeCCCC---EEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC--CccCCeeeeccchh
Confidence 445666544 7999999999 99999999999999999999999 8889 8 99998 34567999999986
Q ss_pred ccc---cchHHHHHHHHhc---CC----C-------ccCccccccccCccCCceeecCCccE--EEEecce----ecccc
Q 038045 116 LTD---YDTLLENVRDLRE---GK----P-------VQVPIYDFESSSRTGYRTVEVPSSRI--VIIEGIY----ALSEK 172 (621)
Q Consensus 116 l~d---~~tV~enL~~L~~---gk----~-------V~~p~yd~~~~~rsggq~qrVa~ArV--LIvEG~l----LLlDE 172 (621)
+++ ..++.+|+ +... +. . +.+..+.. ...+++|++|+++.+++ ++.+|.+ +++||
T Consensus 190 l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~gl~~~~~-~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDE 267 (460)
T 2npi_A 190 ATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNFGLERINE-NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDT 267 (460)
T ss_dssp EEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCCCSSSGGG-CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEEC
T ss_pred hcccccccchhhhh-cccccccCcchHHHHHHHHHHhCCCcccc-hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeC
Confidence 544 45777777 3211 10 0 00111111 45778999999999999 9999999 99999
Q ss_pred -ccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHH------HHhccccccchh-----hhcCC-CCcee
Q 038045 173 -LRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQIS------ETSAKNLSVDQI-----KAVYP-EGHTE 236 (621)
Q Consensus 173 -p~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~e------ea~~R~v~~~d~-----iavl~-eg~Ie 236 (621)
|+..+|.. .+.+.++ +++.|.|++.|+|+.. .+. ..+|+ +.++. .|.+.
T Consensus 268 pPts~LD~~--------~~~l~~l---~~~~~~tviiVth~~~~~l~~~~~~----~~~dr~~~~~vi~l~k~G~iv 329 (460)
T 2npi_A 268 PSISQLDEN--------LAELHHI---IEKLNVNIMLVLCSETDPLWEKVKK----TFGPELGNNNIFFIPKLDGVS 329 (460)
T ss_dssp CCGGGSCSS--------CHHHHHH---HHHTTCCEEEEECCSSCTHHHHHHH----HHHHHHCGGGEEEECCCTTCC
T ss_pred CcccccChh--------HHHHHHH---HHHhCCCEEEEEccCchhhhHHHHH----HhcccccCCEEEEEeCCCcEE
Confidence 99999985 1333333 3456899999999765 443 45566 66666 66555
No 64
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.56 E-value=1.5e-16 Score=179.43 Aligned_cols=179 Identities=9% Similarity=0.054 Sum_probs=119.0
Q ss_pred cceeeeeCcE-EEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEE-----------ECCcccc---
Q 038045 40 DPLSFEKGFF-VVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVIS-----------MDNYNDS--- 103 (621)
Q Consensus 40 ~~lsf~~G~~-~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~-----------lDg~~~~--- 103 (621)
+++++.||.. ..+++++ .+++|+ ++||+||||||||||+++|+|++ |+.|.|. +.|....
T Consensus 81 ~~~~~~Y~~~~~~l~~l~-~~~~Ge---i~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~ 156 (608)
T 3j16_B 81 AHVTHRYSANSFKLHRLP-TPRPGQ---VLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYF 156 (608)
T ss_dssp TTEEEECSTTSCEEECCC-CCCTTS---EEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHH
T ss_pred CCeEEEECCCceeecCCC-CCCCCC---EEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhh
Confidence 4578888743 3567666 588999 99999999999999999999999 8888873 2222100
Q ss_pred ----ccccc--ccCCCCccc------ccchHHHHHHHHhcC---------CCccC-ccccccccCccCCceeecCCccEE
Q 038045 104 ----SRVVD--GNFDDPRLT------DYDTLLENVRDLREG---------KPVQV-PIYDFESSSRTGYRTVEVPSSRIV 161 (621)
Q Consensus 104 ----~R~Ig--~vfQdp~l~------d~~tV~enL~~L~~g---------k~V~~-p~yd~~~~~rsggq~qrVa~ArVL 161 (621)
...+. +.+|....+ ...++.+++...... +.+.+ ...+....++|+|++|++++++++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL 236 (608)
T 3j16_B 157 TKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSC 236 (608)
T ss_dssp HHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHH
T ss_pred hHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHH
Confidence 00111 111111100 111333333211100 00111 224556789999999999999999
Q ss_pred EEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCC
Q 038045 162 IIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEG 233 (621)
Q Consensus 162 IvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg 233 (621)
+.+|.++++|||++.||+. ....+.++.+.+.+.|.|++.|+|+++++. ..+|++.+++.+
T Consensus 237 ~~~p~llllDEPts~LD~~-------~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~----~~~drv~vl~~~ 297 (608)
T 3j16_B 237 VQEADVYMFDEPSSYLDVK-------QRLNAAQIIRSLLAPTKYVICVEHDLSVLD----YLSDFVCIIYGV 297 (608)
T ss_dssp HSCCSEEEEECTTTTCCHH-------HHHHHHHHHHGGGTTTCEEEEECSCHHHHH----HHCSEEEEEESC
T ss_pred HhCCCEEEEECcccCCCHH-------HHHHHHHHHHHHHhCCCEEEEEeCCHHHHH----HhCCEEEEEeCC
Confidence 9999999999999999973 234455566666667999999999999886 666777777543
No 65
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.56 E-value=3.7e-15 Score=155.10 Aligned_cols=184 Identities=15% Similarity=0.159 Sum_probs=109.8
Q ss_pred EeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CC-----eeEEEECCccccc---cccccc--CCCCcccccchHHHHHH
Q 038045 59 AQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PS-----IAVISMDNYNDSS---RVVDGN--FDDPRLTDYDTLLENVR 127 (621)
Q Consensus 59 I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~-----sGvI~lDg~~~~~---R~Ig~v--fQdp~l~d~~tV~enL~ 127 (621)
+++|+ +|||+||||||||||+++|+|++ |. .+.|..|+++... ..+++. +..|..++...+.+.+.
T Consensus 87 ~~~g~---ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~ 163 (312)
T 3aez_A 87 RPVPF---IIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVT 163 (312)
T ss_dssp SCCCE---EEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHH
T ss_pred CCCCE---EEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 66777 99999999999999999999998 53 5566777664321 112211 23344455555666666
Q ss_pred HHhcCCCccCccccccccCccCCceeecCCcc-------EEEEecceeccc----cccCCCCeeEEecCCchHHHHHHHH
Q 038045 128 DLREGKPVQVPIYDFESSSRTGYRTVEVPSSR-------IVIIEGIYALSE----KLRPLLDLRVSVTGGVHFDLVKRVL 196 (621)
Q Consensus 128 ~L~~gk~V~~p~yd~~~~~rsggq~qrVa~Ar-------VLIvEG~lLLlD----Ep~s~LDlkV~Vd~~~d~~LirRI~ 196 (621)
.+..+.. +......++|+.++++.++ ++|+|+.+++.| ++...+|.+|+|+++.+....|++.
T Consensus 164 ~l~~~~~------~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~~~l~~~~D~~I~V~a~~~~~~~R~i~ 237 (312)
T 3aez_A 164 SVKSGSD------YACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPTLMVSDLFDFSLYVDARIEDIEQWYVS 237 (312)
T ss_dssp HHHTTCS------CEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSSCCGGGGCSEEEEEEECHHHHHHHHHH
T ss_pred HhCCCcc------cCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcchHHHHHhcCcEEEEECCHHHHHHHHHH
Confidence 6553321 1223456677777766554 455555544442 3445578999999999888888888
Q ss_pred HHHHHcC---CCceehHhHH-----HHHhcccc-ccchhhhcCCCCceeeccCceeEEecCCCCC
Q 038045 197 RDIQRVG---QEPEEIIQQI-----SETSAKNL-SVDQIKAVYPEGHTETMEQTYDIYLLPPGED 252 (621)
Q Consensus 197 Rdl~erG---~Ti~~VtHd~-----eea~~R~v-~~~d~iavl~eg~Ie~~~~~aDIYi~P~~~~ 252 (621)
|.+..++ .++..+.|++ +++..++. .|.....++.+.+|.|+...||+ +++.+.+
T Consensus 238 R~~~~rd~~~r~~~~~~~~~~g~s~e~a~~~v~~~~~~~~~p~~~~~i~p~~~~ADl-ii~~~~~ 301 (312)
T 3aez_A 238 RFLAMRTTAFADPESHFHHYAAFSDSQAVVAAREIWRTINRPNLVENILPTRPRATL-VLRKDAD 301 (312)
T ss_dssp HHHHHTTTGGGSTTSTTGGGTTCCHHHHHHHHHHHHHHTHHHHHHHTTGGGGGGCSE-EEEECTT
T ss_pred HHHHHHhccccCcchhhhcccCCCHHHHHHHHHHHHHhccHHHHHHhccCCCCCCeE-EEecCCC
Confidence 8765332 2333333332 11110000 12223334566788899899999 4555543
No 66
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.55 E-value=1.8e-16 Score=176.36 Aligned_cols=158 Identities=11% Similarity=0.144 Sum_probs=109.1
Q ss_pred EeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEE-----------EECCccc---------ccc----cccccCCC
Q 038045 59 AQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVI-----------SMDNYND---------SSR----VVDGNFDD 113 (621)
Q Consensus 59 I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI-----------~lDg~~~---------~~R----~Ig~vfQd 113 (621)
.++|+ ++||+||||||||||+++|+|++ |+.|.| .++|... ... .+.++.+.
T Consensus 22 ~~~Ge---i~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~ 98 (538)
T 3ozx_A 22 PKNNT---ILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYA 98 (538)
T ss_dssp CCTTE---EEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGG
T ss_pred CCCCC---EEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhh
Confidence 45788 99999999999999999999999 888987 3444311 001 12233332
Q ss_pred CcccccchHHHHHHHHhcCC-------CccC-ccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecC
Q 038045 114 PRLTDYDTLLENVRDLREGK-------PVQV-PIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTG 185 (621)
Q Consensus 114 p~l~d~~tV~enL~~L~~gk-------~V~~-p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~ 185 (621)
+..+. .++.+++....... .+.+ ...+....++|+|++|++.++++++.+|.++++|||++.||+.
T Consensus 99 ~~~~~-~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~----- 172 (538)
T 3ozx_A 99 SKFLK-GTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVR----- 172 (538)
T ss_dssp GTTCC-SBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHH-----
T ss_pred hhhcc-CcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHH-----
Confidence 22222 25555543321110 0111 1235567889999999999999999999999999999999973
Q ss_pred CchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCC
Q 038045 186 GVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPE 232 (621)
Q Consensus 186 ~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~e 232 (621)
....+.++.+.+.+ |.|++.|+|+++++. ..+|++.+++.
T Consensus 173 --~~~~l~~~l~~l~~-g~tii~vsHdl~~~~----~~~d~i~vl~~ 212 (538)
T 3ozx_A 173 --ERMNMAKAIRELLK-NKYVIVVDHDLIVLD----YLTDLIHIIYG 212 (538)
T ss_dssp --HHHHHHHHHHHHCT-TSEEEEECSCHHHHH----HHCSEEEEEEE
T ss_pred --HHHHHHHHHHHHhC-CCEEEEEEeChHHHH----hhCCEEEEecC
Confidence 23444555555544 999999999998876 56777776654
No 67
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=99.46 E-value=4.5e-15 Score=157.53 Aligned_cols=146 Identities=17% Similarity=0.191 Sum_probs=109.8
Q ss_pred eEEEECCccccccc---------ccccCCCCcccccchHHHHHHHHhcC-----------------------------CC
Q 038045 93 AVISMDNYNDSSRV---------VDGNFDDPRLTDYDTLLENVRDLREG-----------------------------KP 134 (621)
Q Consensus 93 GvI~lDg~~~~~R~---------Ig~vfQdp~l~d~~tV~enL~~L~~g-----------------------------k~ 134 (621)
..|++|||+..+.. .-..+..|..||...+.+.+..++.+ ..
T Consensus 157 ~vi~mDgFh~~~~~L~~~~d~~~~~~rrG~P~tfD~~~l~~~l~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 236 (359)
T 2ga8_A 157 QIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKLSKTFSQTIPD 236 (359)
T ss_dssp EEEEGGGGBCCHHHHTTSSSTHHHHTTTTSGGGBCHHHHHHHHHHHHHHHTSCCC-------CCCHHHHHHTCEETTCCC
T ss_pred EEEecCcCCCCHHHHhhccCcchhhccCCCCccccHHHHHHHHHHHHcCCcccccccccccccccccccccccccccCce
Confidence 46789999754322 23466788999999988888887655 56
Q ss_pred ccCccccccccCccCCceeecCCccEEEEecceecccc-----ccCCCC-----eeEEecCCchHHHHHHHHHHHHHcCC
Q 038045 135 VQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEK-----LRPLLD-----LRVSVTGGVHFDLVKRVLRDIQRVGQ 204 (621)
Q Consensus 135 V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDE-----p~s~LD-----lkV~Vd~~~d~~LirRI~Rdl~erG~ 204 (621)
+..|.||+..+++..+.....+..+++|+||.++|.++ +...+| ..|||+++.+.+..|.+.|++ +.|.
T Consensus 237 v~~P~yD~~~~d~~~~~~~v~~~~~iVIvEGi~LL~e~~~w~~l~~l~D~~~~~~~i~Vdad~ev~~~Rli~R~~-~~Gl 315 (359)
T 2ga8_A 237 IFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYDQENWKKIYKTLADTGALLVYKIDIDYEATEERVAKRHL-QSGL 315 (359)
T ss_dssp EEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSHHHHHHHHHHHTTTCEEEEEEECCHHHHHHHHHHHHH-HTTS
T ss_pred EeeccccCccCCCCCCceEecCCCCEEEEEeehhhccccchhhhhhccccccceEEEEEECCHHHHHHHHHHhhh-ccCC
Confidence 78999999988887755544455799999999888873 456788 899999999999888888887 4688
Q ss_pred --CceehHhHHHHHhccccccchhhhcCCCCceeeccCceeEEecCCC
Q 038045 205 --EPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDIYLLPPG 250 (621)
Q Consensus 205 --Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDIYi~P~~ 250 (621)
+.+.+...+...- . + +..+|+++...+|+++.-.+
T Consensus 316 ~~s~eea~~r~~~~d----~------p-N~~~I~~~~~~ad~i~~~~~ 352 (359)
T 2ga8_A 316 VTTIAEGREKFRSND----L------L-NGRDIDNHLIKVDNIVHIRN 352 (359)
T ss_dssp CSSHHHHHHHHHHCT----T------T-SSHHHHHTBCCCTTEEEEEC
T ss_pred CCCHHHHHHHHHhcC----c------h-hhHhHhhcCCCCCEEEEecC
Confidence 8888877766432 1 2 33688888888888655433
No 68
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.46 E-value=1.5e-15 Score=143.46 Aligned_cols=148 Identities=19% Similarity=0.158 Sum_probs=94.1
Q ss_pred ecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCcccccccccccCCCCcc-cccchHHHHHHHH---
Q 038045 54 ACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNYNDSSRVVDGNFDDPRL-TDYDTLLENVRDL--- 129 (621)
Q Consensus 54 ~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~~~~~R~Ig~vfQdp~l-~d~~tV~enL~~L--- 129 (621)
++||.+++|+ +++|+||||||||||++++.+ +...+..|. ..++++|++.. +...++.+.+...
T Consensus 1 ~vsl~i~~ge---i~~l~G~nGsGKSTl~~~~~~---~~~~~~~d~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (171)
T 4gp7_A 1 SMKLTIPELS---LVVLIGSSGSGKSTFAKKHFK---PTEVISSDF------CRGLMSDDENDQTVTGAAFDVLHYIVSK 68 (171)
T ss_dssp CEEEEEESSE---EEEEECCTTSCHHHHHHHHSC---GGGEEEHHH------HHHHHCSSTTCGGGHHHHHHHHHHHHHH
T ss_pred CccccCCCCE---EEEEECCCCCCHHHHHHHHcc---CCeEEccHH------HHHHhcCcccchhhHHHHHHHHHHHHHH
Confidence 5789999999 999999999999999998543 222222221 23667776542 2222333333221
Q ss_pred --hcCCCccCccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEec----CCc-----hHHHHHHHHHH
Q 038045 130 --REGKPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVT----GGV-----HFDLVKRVLRD 198 (621)
Q Consensus 130 --~~gk~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd----~~~-----d~~LirRI~Rd 198 (621)
..+... .. ......+++++|++..+++++.+|.++++|||++.||+..... .+. ....+..+.+.
T Consensus 69 ~~~~g~~~---~~-~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~ 144 (171)
T 4gp7_A 69 RLQLGKLT---VV-DATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKG 144 (171)
T ss_dssp HHHTTCCE---EE-ESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTT
T ss_pred HHhCCCeE---EE-ECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhh
Confidence 122111 11 1223447788999999999999999999999999999742100 000 11223333333
Q ss_pred HHHcCCCceehHhHHHHHh
Q 038045 199 IQRVGQEPEEIIQQISETS 217 (621)
Q Consensus 199 l~erG~Ti~~VtHd~eea~ 217 (621)
+.+.|.|++.++|+++++.
T Consensus 145 l~~~g~tvi~vtH~~~~~~ 163 (171)
T 4gp7_A 145 LQREGFRYVYILNSPEEVE 163 (171)
T ss_dssp HHHHTCSEEEEECSHHHHH
T ss_pred HHhcCCcEEEEeCCHHHhh
Confidence 4555999999999998875
No 69
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.45 E-value=1.9e-14 Score=141.17 Aligned_cols=154 Identities=14% Similarity=0.071 Sum_probs=93.7
Q ss_pred eCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccc--------ccccccccCCCCccc
Q 038045 46 KGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNYND--------SSRVVDGNFDDPRLT 117 (621)
Q Consensus 46 ~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~~~--------~~R~Ig~vfQdp~l~ 117 (621)
+-.+.-|++|||++++|+ +++|+||||||||||+++|+|++| |.|.+ |... ..+.++|+||++.+|
T Consensus 7 ~~~~~~l~~isl~i~~G~---~~~lvGpsGsGKSTLl~~L~g~~p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~ 80 (218)
T 1z6g_A 7 HHHHSSGLVPRGSMNNIY---PLVICGPSGVGKGTLIKKLLNEFP--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIF 80 (218)
T ss_dssp ---------------CCC---CEEEECSTTSSHHHHHHHHHHHST--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHH
T ss_pred ccccccccCCceecCCCC---EEEEECCCCCCHHHHHHHHHhhCC--CcEEE-eecccCCCCCcccccCCeEEECCHHHH
Confidence 334557999999999999 999999999999999999999986 77877 4421 124688999988766
Q ss_pred ccchH------------------HHHHHHH-hcCCCccCccccccccCccCCceeecCC-----ccEEEEecceeccccc
Q 038045 118 DYDTL------------------LENVRDL-REGKPVQVPIYDFESSSRTGYRTVEVPS-----SRIVIIEGIYALSEKL 173 (621)
Q Consensus 118 d~~tV------------------~enL~~L-~~gk~V~~p~yd~~~~~rsggq~qrVa~-----ArVLIvEG~lLLlDEp 173 (621)
+.++. .+.+..+ ...+.+ .. ..+++||+++++.. +++++..+.+.++||+
T Consensus 81 ~~~~~~~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~---il---~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~ 154 (218)
T 1z6g_A 81 EDKLKNEDFLEYDNYANNFYGTLKSEYDKAKEQNKIC---LF---EMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSR 154 (218)
T ss_dssp HHHHHTTCEEEEEEETTEEEEEEHHHHHHHHHTTCEE---EE---EECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHH
T ss_pred HHhhhccchhhhhhcccccCCCcHHHHHHHHhCCCcE---EE---EecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHH
Confidence 54320 0111111 111100 11 13567889998888 7788888888899999
Q ss_pred cCCCCeeEEecCCchHHHHHHHHHHHHH------cCCCceehHhHHHHHh
Q 038045 174 RPLLDLRVSVTGGVHFDLVKRVLRDIQR------VGQEPEEIIQQISETS 217 (621)
Q Consensus 174 ~s~LDlkV~Vd~~~d~~LirRI~Rdl~e------rG~Ti~~VtHd~eea~ 217 (621)
+..+|.. .+..+.+++.+...+ .+.+.+.++|+.+++.
T Consensus 155 ~~~~d~~------~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~ 198 (218)
T 1z6g_A 155 LLTRNTE------NQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTY 198 (218)
T ss_dssp HHHTCCC------CHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHH
T ss_pred HHhcCCC------CHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHH
Confidence 9988852 233444555544333 4677888888887775
No 70
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=99.43 E-value=5.5e-14 Score=144.58 Aligned_cols=169 Identities=16% Similarity=0.207 Sum_probs=116.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhhCC----CeeEEEECCcccc-cc----------ccc-ccCCC--CcccccchHHHHH
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNFMP----SIAVISMDNYNDS-SR----------VVD-GNFDD--PRLTDYDTLLENV 126 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagLlP----~sGvI~lDg~~~~-~R----------~Ig-~vfQd--p~l~d~~tV~enL 126 (621)
+++|||+||+||||||+++.|+..++ ....|++|+++.. .. ..| ..++. +..++...+.+.+
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r~~~~~~~~~~~~~~~~g~~~~~~fg~~~~d~~~l~~~l 84 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAAGDATFSHFSYEANELKELERVF 84 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBSCCHHHHHHHHHHHHHHTCTTCSTTSGGGBCHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhcCCHHHhhhhhhhhhhccCcCcCCCChhhhcHHHHHHHH
Confidence 45899999999999999999998652 3678999998742 11 111 23443 6677777777777
Q ss_pred HHHhcCCCccCccccc-----cccCccCCce---eec-CCccEEEEecceec----cccccCCCCeeEEecCCchHHHHH
Q 038045 127 RDLREGKPVQVPIYDF-----ESSSRTGYRT---VEV-PSSRIVIIEGIYAL----SEKLRPLLDLRVSVTGGVHFDLVK 193 (621)
Q Consensus 127 ~~L~~gk~V~~p~yd~-----~~~~rsggq~---qrV-a~ArVLIvEG~lLL----lDEp~s~LDlkV~Vd~~~d~~Lir 193 (621)
..+..+..+..|.|++ ..+....+.. ..+ ....++|+||.+++ ...+...+|.+||++++.+.++.|
T Consensus 85 ~~l~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~vvIvEG~~~~~~~~~~~v~~~~D~~IfV~a~~~~rl~R 164 (290)
T 1a7j_A 85 REYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNSEVNIAGLADLKIGVVPVINLEWIQ 164 (290)
T ss_dssp HHHHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTTCBCSSCBCGGGCSEEEEEEECHHHHHHH
T ss_pred HHHHcCCcccceeeccccccccccCCCCCccccccccCCCCCEEEEEecccccccchHhHHHhCCEEEEEECCHHHHHHH
Confidence 7777777777787743 1222222211 123 34679999999887 245778899999999999999999
Q ss_pred HHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 194 RVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 194 RI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
++.|+..++|.+.+.+...+..... .+..++.|....+|+
T Consensus 165 rl~Rd~~~RG~s~e~v~~~i~~r~~-----------~~~r~i~p~~~~AD~ 204 (290)
T 1a7j_A 165 KIHRDRATRGYTTEAVTDVILRRMH-----------AYVHCIVPQFSQTDI 204 (290)
T ss_dssp HHHHTSSSCCSCCCCHHHHHHHHHH-----------HHHHHTGGGGGTCSE
T ss_pred HhhhhhhhcCCChHHHHHHHHHhCc-----------cHHHhhhhhhccCCE
Confidence 9999988899999999888766641 222345555666676
No 71
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.43 E-value=1.1e-15 Score=150.50 Aligned_cols=145 Identities=13% Similarity=0.092 Sum_probs=87.6
Q ss_pred CcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc----ccccccccccCCCCc--ccccc
Q 038045 47 GFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNY----NDSSRVVDGNFDDPR--LTDYD 120 (621)
Q Consensus 47 G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~----~~~~R~Ig~vfQdp~--l~d~~ 120 (621)
|...+|++| ++|+ +++|+||||||||||+++|+|+-|+.|.|..... ....+.++|+||++. +..+.
T Consensus 11 g~~~~l~~i----~~Ge---~~~liG~nGsGKSTLl~~l~Gl~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~~ 83 (208)
T 3b85_A 11 GQKHYVDAI----DTNT---IVFGLGPAGSGKTYLAMAKAVQALQSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPYL 83 (208)
T ss_dssp HHHHHHHHH----HHCS---EEEEECCTTSSTTHHHHHHHHHHHHTTSCSEEEEEECSCCTTCCCCSSCC------CTTT
T ss_pred hHHHHHHhc----cCCC---EEEEECCCCCCHHHHHHHHhcCCCcCCeeeeEEecCCchhhhcceEEecCCHHHHHHHHH
Confidence 344567774 7899 9999999999999999999998435566532111 122456999999871 10111
Q ss_pred -hHHHHHHHHhcCCCccCccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHH
Q 038045 121 -TLLENVRDLREGKPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDI 199 (621)
Q Consensus 121 -tV~enL~~L~~gk~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl 199 (621)
.+.+.+ ... ......+..... ..|++|+++.+++++.+|.++++|||++. ....+..+.+.+
T Consensus 84 ~~~~~~~---~~~--~~~~~~~~~l~~-glGq~qrv~lAraL~~~p~lllLDEPts~-----------~~~~l~~~l~~l 146 (208)
T 3b85_A 84 RPLHDAL---RDM--VEPEVIPKLMEA-GIVEVAPLAYMRGRTLNDAFVILDEAQNT-----------TPAQMKMFLTRL 146 (208)
T ss_dssp HHHHHHH---TTT--SCTTHHHHHHHT-TSEEEEEGGGGTTCCBCSEEEEECSGGGC-----------CHHHHHHHHTTB
T ss_pred HHHHHHH---HHh--ccHHHHHHHHHh-CCchHHHHHHHHHHhcCCCEEEEeCCccc-----------cHHHHHHHHHHh
Confidence 111111 100 000011111111 22899999999999999999999999988 123444444444
Q ss_pred HHcCCCceehHhHHHHHh
Q 038045 200 QRVGQEPEEIIQQISETS 217 (621)
Q Consensus 200 ~erG~Ti~~VtHd~eea~ 217 (621)
+.|.|++ ++|++..+.
T Consensus 147 -~~g~tii-vtHd~~~~~ 162 (208)
T 3b85_A 147 -GFGSKMV-VTGDITQVD 162 (208)
T ss_dssp -CTTCEEE-EEEC-----
T ss_pred -cCCCEEE-EECCHHHHh
Confidence 4588999 999987654
No 72
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.40 E-value=5e-14 Score=165.07 Aligned_cols=93 Identities=9% Similarity=-0.000 Sum_probs=76.3
Q ss_pred cccccCccCCceeecCCccEEEEec---ceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHh
Q 038045 141 DFESSSRTGYRTVEVPSSRIVIIEG---IYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETS 217 (621)
Q Consensus 141 d~~~~~rsggq~qrVa~ArVLIvEG---~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~ 217 (621)
+.....+|||++|++.+|++++.++ .++++|||++.||+ .+.+.+..+.+.+.+.|.|++.|+|+++...
T Consensus 800 gq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~-------~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~ 872 (916)
T 3pih_A 800 GQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHF-------EDVRKLVEVLHRLVDRGNTVIVIEHNLDVIK 872 (916)
T ss_dssp TCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCH-------HHHHHHHHHHHHHHHTTCEEEEECCCHHHHT
T ss_pred cCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCH-------HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 4456789999999999999998765 69999999999997 3445566666666677999999999998764
Q ss_pred ccccccchhhhcC------CCCceeeccCceeEE
Q 038045 218 AKNLSVDQIKAVY------PEGHTETMEQTYDIY 245 (621)
Q Consensus 218 ~R~v~~~d~iavl------~eg~Ie~~~~~aDIY 245 (621)
.+|++.+| ..|.+...+++.++.
T Consensus 873 -----~ADrIivLgp~gg~~~G~Iv~~Gtpeel~ 901 (916)
T 3pih_A 873 -----NADHIIDLGPEGGKEGGYIVATGTPEEIA 901 (916)
T ss_dssp -----TCSEEEEEESSSGGGCCEEEEEESHHHHH
T ss_pred -----hCCEEEEecCCCCCCCCEEEEEcCHHHHH
Confidence 37888888 788999888888874
No 73
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.39 E-value=8.5e-13 Score=131.54 Aligned_cols=152 Identities=34% Similarity=0.590 Sum_probs=115.2
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhhCC---------CeeEEEECCccccc-------ccc-cccCCCCcccccchHHHH
Q 038045 63 DGIILIGLAGPSGAGKTIFTEKILNFMP---------SIAVISMDNYNDSS-------RVV-DGNFDDPRLTDYDTLLEN 125 (621)
Q Consensus 63 e~~iIVGI~GpSGSGKSTLlr~LagLlP---------~sGvI~lDg~~~~~-------R~I-g~vfQdp~l~d~~tV~en 125 (621)
.++++|||+|++||||||+++.|+..+. ....|++|+++... ... .++|.+|..++...+.+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~~~~~~~~~~g~~~f~~~~~~d~~~l~~~ 99 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFDNELILKT 99 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCSCTTSGGGBCHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccChhhhhhhccCCCCCCCcchhhHHHHHHH
Confidence 4577999999999999999999999762 12378899886421 112 368889999988888888
Q ss_pred HHHHhcCCCccCccccccccCccCCceeecCCccEEEEecceec-cccccCCCCeeEEecCCchHHHHHHHHHHHHHcCC
Q 038045 126 VRDLREGKPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYAL-SEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQ 204 (621)
Q Consensus 126 L~~L~~gk~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLL-lDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~ 204 (621)
|..+..+..+..|.|++..+.+.. +........++|+||.+++ .++....+|..+|++++.+..+.|...|+...+|.
T Consensus 100 L~~l~~~~~v~~~~~d~~~~~~~~-~~~~~~~~~~vIveG~~~~~~~~~~~~~d~vi~l~~~~e~~~~R~~~R~~~~rg~ 178 (252)
T 1uj2_A 100 LKEITEGKTVQIPVYDFVSHSRKE-ETVTVYPADVVLFEGILAFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISERGR 178 (252)
T ss_dssp HHHHHTTCCEEEEEEETTTTEEEE-EEEEECCCSEEEEECTTTTSSHHHHHHCSEEEEEECCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHcCCeeecCccccccccCCC-ceeeeCCCcEEEEeeeccccCHHHHHhcCeeEEEeCCHHHHHHHHHHHHHhhhCC
Confidence 888888888888889887655442 2333445679999998776 35566678999999999998887777777667788
Q ss_pred CceehHhHHHH
Q 038045 205 EPEEIIQQISE 215 (621)
Q Consensus 205 Ti~~VtHd~ee 215 (621)
+...+..++..
T Consensus 179 ~~e~i~~~~~~ 189 (252)
T 1uj2_A 179 DLEQILSQYIT 189 (252)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 87777766654
No 74
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.38 E-value=4.2e-14 Score=164.47 Aligned_cols=92 Identities=8% Similarity=0.061 Sum_probs=74.1
Q ss_pred cccccCccCCceeecCCccEEEEe---cceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHh
Q 038045 141 DFESSSRTGYRTVEVPSSRIVIIE---GIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETS 217 (621)
Q Consensus 141 d~~~~~rsggq~qrVa~ArVLIvE---G~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~ 217 (621)
+.....+|||++|++..+++++.+ +.++++|||+..||+ .+.+.+..+.+.+.+.|.|++.|+|+++...
T Consensus 725 ~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~-------~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~ 797 (842)
T 2vf7_A 725 GQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHP-------ADVERLQRQLVKLVDAGNTVIAVEHKMQVVA 797 (842)
T ss_dssp TCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCH-------HHHHHHHHHHHHHHHTTCEEEEECCCHHHHT
T ss_pred cCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCH-------HHHHHHHHHHHHHHhCCCEEEEEcCCHHHHH
Confidence 556788999999999999999996 689999999999997 3345566666666678999999999998763
Q ss_pred ccccccchhhhcC------CCCceeeccCceeE
Q 038045 218 AKNLSVDQIKAVY------PEGHTETMEQTYDI 244 (621)
Q Consensus 218 ~R~v~~~d~iavl------~eg~Ie~~~~~aDI 244 (621)
.+|++.+| +.|.+...+++.++
T Consensus 798 -----~aDrii~L~p~~g~~~G~Iv~~g~~~el 825 (842)
T 2vf7_A 798 -----ASDWVLDIGPGAGEDGGRLVAQGTPAEV 825 (842)
T ss_dssp -----TCSEEEEECSSSGGGCCSEEEEECHHHH
T ss_pred -----hCCEEEEECCCCCCCCCEEEEEcCHHHH
Confidence 47888888 57777766666665
No 75
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.37 E-value=1.2e-12 Score=134.78 Aligned_cols=147 Identities=20% Similarity=0.316 Sum_probs=102.7
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhhC-CC-----eeEE-EECCcccccc---cccc---------cCCCCcccccchHH
Q 038045 63 DGIILIGLAGPSGAGKTIFTEKILNFM-PS-----IAVI-SMDNYNDSSR---VVDG---------NFDDPRLTDYDTLL 123 (621)
Q Consensus 63 e~~iIVGI~GpSGSGKSTLlr~LagLl-P~-----sGvI-~lDg~~~~~R---~Ig~---------vfQdp~l~d~~tV~ 123 (621)
.++.+|||+|++|||||||++.|++++ +. .+.+ ++|+|+.... .+.+ .+..|..++...+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~ 108 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQ 108 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHHH
Confidence 345699999999999999999999988 31 4556 9999864321 1211 12247788888889
Q ss_pred HHHHHHhcC------CCccCccccccc----cCccCC-ceeecCCccEEEEecceecccc--------------------
Q 038045 124 ENVRDLREG------KPVQVPIYDFES----SSRTGY-RTVEVPSSRIVIIEGIYALSEK-------------------- 172 (621)
Q Consensus 124 enL~~L~~g------k~V~~p~yd~~~----~~rsgg-q~qrVa~ArVLIvEG~lLLlDE-------------------- 172 (621)
+.+..++.+ +.+..|.|++.. +++... ....+ .++++|+||.++.+|.
T Consensus 109 ~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~-~~~IlIlEG~~~~ld~~~~~~~~~~~~~~~l~~~n~ 187 (290)
T 1odf_A 109 EVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL-PVDIFILEGWFLGFNPILQGIENNDLLTGDMVDVNA 187 (290)
T ss_dssp HHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES-SCSEEEEEESSTTCCCCCSCTTTCSSSCTTHHHHHH
T ss_pred HHHHHhhccCccccCcceeeccCccccCCccccccccccceEc-CCCEEEEeCccccCCccchhhhhcccchhhHHHHHH
Confidence 999888877 567788998765 333321 12233 5789999998876653
Q ss_pred --------ccCCCCee---EEecCCchHHHHH-HHHH--H-HHHc--CCCceehH
Q 038045 173 --------LRPLLDLR---VSVTGGVHFDLVK-RVLR--D-IQRV--GQEPEEII 210 (621)
Q Consensus 173 --------p~s~LDlk---V~Vd~~~d~~Lir-RI~R--d-l~er--G~Ti~~Vt 210 (621)
+.+.+|++ ||++++.+..+.+ |+.| + ..++ |++.+.+.
T Consensus 188 ~l~~y~~~l~~~~D~~d~~I~vd~~~~~~i~rWRi~re~~l~~~r~~g~s~e~v~ 242 (290)
T 1odf_A 188 KLFFYSDLLWRNPEIKSLGIVFTTDNINNVYGWRLQQEHELISKVGKGMTDEQVH 242 (290)
T ss_dssp HHHHHHHHTTTCTTCCEEEEEEEESCTTHHHHHHHHHHHHHHHHHSCSCCHHHHH
T ss_pred HHHHHHHHHHhhhhhhcceEEEECCCHHHHHHHHHHHHHHHHHhccCCCCHHHHH
Confidence 34557777 9999966666555 8887 4 3345 88988864
No 76
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.36 E-value=8.3e-14 Score=163.23 Aligned_cols=93 Identities=9% Similarity=0.047 Sum_probs=73.8
Q ss_pred ccccccCccCCceeecCCccEEEEec---ceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHH
Q 038045 140 YDFESSSRTGYRTVEVPSSRIVIIEG---IYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISET 216 (621)
Q Consensus 140 yd~~~~~rsggq~qrVa~ArVLIvEG---~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea 216 (621)
.+.....+|||++|++..+++++.++ .++++|||+..||+. +...+.++.+.+.+.|.|++.|+|+++..
T Consensus 839 l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~-------~~~~l~~lL~~L~~~G~TVIvisHdl~~i 911 (972)
T 2r6f_A 839 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVD-------DIARLLDVLHRLVDNGDTVLVIEHNLDVI 911 (972)
T ss_dssp TTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHH-------HHHHHHHHHHHHHHTTCEEEEECCCHHHH
T ss_pred ccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHH-------HHHHHHHHHHHHHhCCCEEEEEcCCHHHH
Confidence 34567889999999999999999764 899999999999973 34555566666667899999999999875
Q ss_pred hccccccchhhhcC------CCCceeeccCceeE
Q 038045 217 SAKNLSVDQIKAVY------PEGHTETMEQTYDI 244 (621)
Q Consensus 217 ~~R~v~~~d~iavl------~eg~Ie~~~~~aDI 244 (621)
..+|++.+| ..|.+...+++.++
T Consensus 912 -----~~aDrIivL~p~gG~~~G~Iv~~g~~~el 940 (972)
T 2r6f_A 912 -----KTADYIIDLGPEGGDRGGQIVAVGTPEEV 940 (972)
T ss_dssp -----TTCSEEEEECSSSTTSCCSEEEEESHHHH
T ss_pred -----HhCCEEEEEcCCCCCCCCEEEEecCHHHH
Confidence 347888888 57777766666665
No 77
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.35 E-value=9.1e-15 Score=141.47 Aligned_cols=167 Identities=12% Similarity=0.053 Sum_probs=92.5
Q ss_pred EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc----cc---ccccccccCCCCcccccch
Q 038045 49 FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNY----ND---SSRVVDGNFDDPRLTDYDT 121 (621)
Q Consensus 49 ~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~----~~---~~R~Ig~vfQdp~l~d~~t 121 (621)
..++++ ..+++|+ +++|+||||||||||+++|+|+++. |.+++. .. ..+.++|+||++..|+.++
T Consensus 9 ~~~~~~--~~i~~Ge---i~~l~GpnGsGKSTLl~~l~gl~~~---i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 80 (207)
T 1znw_A 9 KPTARG--QPAAVGR---VVVLSGPSAVGKSTVVRCLRERIPN---LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLI 80 (207)
T ss_dssp ------------CCC---EEEEECSTTSSHHHHHHHHHHHSTT---CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH
T ss_pred CcCCCC--CCCCCCC---EEEEECCCCCCHHHHHHHHHhhCCc---eEEcccccccCCcccccCCCeeEecCHHHHHHHH
Confidence 345666 5799999 9999999999999999999999852 222221 11 2346899999988777666
Q ss_pred HHHHHHHHhc--C--CCccCcc--ccccc---------cCccCCceee---cCCccEEEEecceeccccccCCCCeeEEe
Q 038045 122 LLENVRDLRE--G--KPVQVPI--YDFES---------SSRTGYRTVE---VPSSRIVIIEGIYALSEKLRPLLDLRVSV 183 (621)
Q Consensus 122 V~enL~~L~~--g--k~V~~p~--yd~~~---------~~rsggq~qr---Va~ArVLIvEG~lLLlDEp~s~LDlkV~V 183 (621)
+.+++..... + .....+. ..... -+..+..... ...-.+++.++.++++|||+..+|.. .
T Consensus 81 ~~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS~l~~~p~~~~LDep~~~l~~~--~ 158 (207)
T 1znw_A 81 DQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTE--T 158 (207)
T ss_dssp HTTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEEEEEECSCHHHHHHHHHTTSCS--C
T ss_pred hcCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEEEEEECCCHHHHHHHHHhcCCC--C
Confidence 6554421100 0 0000000 00000 0111111110 11112899999999999999888631 0
Q ss_pred cCCchHHHHHHHHHHHH-HcCCCceehHhHHHHHhccccccchhhhcC
Q 038045 184 TGGVHFDLVKRVLRDIQ-RVGQEPEEIIQQISETSAKNLSVDQIKAVY 230 (621)
Q Consensus 184 d~~~d~~LirRI~Rdl~-erG~Ti~~VtHd~eea~~R~v~~~d~iavl 230 (621)
|. ...+.+.++.+.+. +.|.|++.++|+++++. ..+|++.++
T Consensus 159 d~-~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~----~~~d~i~~l 201 (207)
T 1znw_A 159 AD-VIQRRLDTARIELAAQGDFDKVVVNRRLESAC----AELVSLLVG 201 (207)
T ss_dssp HH-HHHHHHHHHHHHHHGGGGSSEEEECSSHHHHH----HHHHHHHC-
T ss_pred HH-HHHHHHHHHHHHHhhhccCcEEEECCCHHHHH----HHHHHHHHh
Confidence 11 11223334444443 46999999999999987 677777766
No 78
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.32 E-value=2e-13 Score=160.47 Aligned_cols=92 Identities=9% Similarity=0.025 Sum_probs=73.1
Q ss_pred cccccCccCCceeecCCccEEEEec---ceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHh
Q 038045 141 DFESSSRTGYRTVEVPSSRIVIIEG---IYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETS 217 (621)
Q Consensus 141 d~~~~~rsggq~qrVa~ArVLIvEG---~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~ 217 (621)
+.....+|||++|++..+++++.++ .++++|||+..||+ .+.+.+..+++.+.+.|.|++.|+|+++..
T Consensus 858 ~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~-------~~~~~l~~lL~~L~~~G~TVIvisHdl~~i- 929 (993)
T 2ygr_A 858 GQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHF-------DDIRKLLNVINGLVDKGNTVIVIEHNLDVI- 929 (993)
T ss_dssp TCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCH-------HHHHHHHHHHHHHHHTTCEEEEECCCHHHH-
T ss_pred cCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCH-------HHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-
Confidence 4556789999999999999999764 89999999999997 334555566666667799999999999875
Q ss_pred ccccccchhhhcC------CCCceeeccCceeE
Q 038045 218 AKNLSVDQIKAVY------PEGHTETMEQTYDI 244 (621)
Q Consensus 218 ~R~v~~~d~iavl------~eg~Ie~~~~~aDI 244 (621)
..+|++.+| ..|.+...+++.++
T Consensus 930 ----~~aDrIivL~p~gg~~~G~Iv~~G~~~el 958 (993)
T 2ygr_A 930 ----KTSDWIIDLGPEGGAGGGTVVAQGTPEDV 958 (993)
T ss_dssp ----TTCSEEEEEESSSTTSCSEEEEEECHHHH
T ss_pred ----HhCCEEEEECCCcCCCCCEEEEecCHHHH
Confidence 347888888 57777766666665
No 79
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.28 E-value=3.6e-13 Score=142.59 Aligned_cols=71 Identities=6% Similarity=-0.077 Sum_probs=54.8
Q ss_pred ccCCceeecCCccEEEEec--ceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccc
Q 038045 147 RTGYRTVEVPSSRIVIIEG--IYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVD 224 (621)
Q Consensus 147 rsggq~qrVa~ArVLIvEG--~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~ 224 (621)
.|+|+++++..+++++.++ .++++|||++.||+. ....+..+++.+. .|.+++.|+|+.+.+ ..+
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~-------~~~~l~~~L~~l~-~~~~vi~itH~~~~~-----~~~ 362 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGA-------AAIAVAEQLSRLA-DTRQVLVVTHLAQIA-----ARA 362 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHH-------HHHHHHHHHHHHT-TTSEEEEECSCHHHH-----TTC
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHH-------HHHHHHHHHHHHh-CCCEEEEEeCcHHHH-----hhc
Confidence 6999999999999999999 999999999999973 2334444444444 489999999998543 346
Q ss_pred hhhhcC
Q 038045 225 QIKAVY 230 (621)
Q Consensus 225 d~iavl 230 (621)
|++.++
T Consensus 363 d~i~~l 368 (415)
T 4aby_A 363 HHHYKV 368 (415)
T ss_dssp SEEEEE
T ss_pred CeEEEE
Confidence 666666
No 80
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.28 E-value=5.5e-13 Score=135.92 Aligned_cols=133 Identities=13% Similarity=0.113 Sum_probs=81.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc----ccccccccCCCCcccccchHHHHHHHHhcCC--CccCc
Q 038045 66 ILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND----SSRVVDGNFDDPRLTDYDTLLENVRDLREGK--PVQVP 138 (621)
Q Consensus 66 iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~----~~R~Ig~vfQdp~l~d~~tV~enL~~L~~gk--~V~~p 138 (621)
+.++|+||||||||||+++|+|+. |..|.|.++|... ..+.+++++|++.+++.+|+.+++.+..... ....+
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 579999999999999999999998 8999999998632 2356899999999888888888876543211 10000
Q ss_pred --------cccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehH
Q 038045 139 --------IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEII 210 (621)
Q Consensus 139 --------~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~Vt 210 (621)
..+....++++|++|++..+|+++. +++.|||+..+|+ .+.+.++ .+.+. .+++.|.
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~-------lD~~~l~----~L~~~-~~vI~Vi 147 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRP-------LDLEFMK----HLSKV-VNIIPVI 147 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCH-------HHHHHHH----HHHTT-SEEEEEE
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCH-------HHHHHHH----HHHhc-CcEEEEE
Confidence 1122346789999999999999875 7788999999985 2333333 34444 6777666
Q ss_pred hHH
Q 038045 211 QQI 213 (621)
Q Consensus 211 Hd~ 213 (621)
|..
T Consensus 148 ~K~ 150 (270)
T 3sop_A 148 AKA 150 (270)
T ss_dssp TTG
T ss_pred ecc
Confidence 554
No 81
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.26 E-value=7e-14 Score=151.93 Aligned_cols=179 Identities=13% Similarity=0.061 Sum_probs=118.7
Q ss_pred ecceeeeeC-cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcc---c-----------
Q 038045 39 QDPLSFEKG-FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYN---D----------- 102 (621)
Q Consensus 39 ~~~lsf~~G-~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~---~----------- 102 (621)
.+++++.++ ...+|+++ |.+.+|+ ++||+||||||||||+++|+|+. |+.|.|.++|.. .
T Consensus 134 ~~~v~~~~~tg~~vld~v-l~i~~Gq---~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~ 209 (438)
T 2dpy_A 134 RTPIEHVLDTGVRAINAL-LTVGRGQ---RMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPD 209 (438)
T ss_dssp SCCCCSBCCCSCHHHHHH-SCCBTTC---EEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHH
T ss_pred EeccceecCCCceEEeee-EEecCCC---EEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhcccc
Confidence 445666665 56799999 9999999 99999999999999999999999 899999999862 1
Q ss_pred -ccccccccCCC-CcccccchHHHHHHHHhc---CCCccCccccccccCccCCceeecCCccEEEEecceeccccccCCC
Q 038045 103 -SSRVVDGNFDD-PRLTDYDTLLENVRDLRE---GKPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLL 177 (621)
Q Consensus 103 -~~R~Ig~vfQd-p~l~d~~tV~enL~~L~~---gk~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~L 177 (621)
..+.+++++|+ ..++++.++.+++....+ ......-.+-......++++ ++++.+ +.+ +..+..+
T Consensus 210 ~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~-qrvslA---l~~------p~~t~gl 279 (438)
T 2dpy_A 210 GRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQ-REIALA---IGE------PPATKGY 279 (438)
T ss_dssp HHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHH-HHHHHH---TTC------CCCSSSC
T ss_pred ccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHH-HHHHHH---hCC------CcccccC
Confidence 12457899984 557888899998876431 11101001111233455655 566554 222 2337888
Q ss_pred CeeEEecCCchHHHHHHHHHHHHH----cCC-----CceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 178 DLRVSVTGGVHFDLVKRVLRDIQR----VGQ-----EPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 178 DlkV~Vd~~~d~~LirRI~Rdl~e----rG~-----Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
|+.. ...+.++.+.+.+ .|. |+..++|++. . ..+|.+..+.+|.+...+..+++
T Consensus 280 D~~~-------~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~----~iad~v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 280 PPSV-------FAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--D----PIADSARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp CTTH-------HHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--C----HHHHHHHHHSSEEEEECHHHHHT
T ss_pred CHHH-------HHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--c----hhhceEEEEeCcEEEEeCCHHHc
Confidence 8632 2233333333222 253 7888999976 2 45677777888887766666655
No 82
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.24 E-value=4e-13 Score=139.88 Aligned_cols=148 Identities=9% Similarity=0.054 Sum_probs=98.7
Q ss_pred eecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCcccccccccccCCCCccc
Q 038045 38 IQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNYNDSSRVVDGNFDDPRLT 117 (621)
Q Consensus 38 v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~~~~~R~Ig~vfQdp~l~ 117 (621)
..++++|.++ ..+|++++|.+++|+ +++|+||||||||||+++|+|++ .|.|.... +|++.+|
T Consensus 103 ~~~~vs~~y~-~~vL~~vsl~i~~Ge---~vaIvGpsGsGKSTLl~lL~gl~--~G~I~~~v-----------~q~~~lf 165 (305)
T 2v9p_A 103 NYQNIELITF-INALKLWLKGIPKKN---CLAFIGPPNTGKSMLCNSLIHFL--GGSVLSFA-----------NHKSHFW 165 (305)
T ss_dssp HHTTCCHHHH-HHHHHHHHHTCTTCS---EEEEECSSSSSHHHHHHHHHHHH--TCEEECGG-----------GTTSGGG
T ss_pred EEEEEEEEcC-hhhhccceEEecCCC---EEEEECCCCCcHHHHHHHHhhhc--CceEEEEe-----------cCccccc
Confidence 4567888776 578999999999999 99999999999999999999998 67775432 2222222
Q ss_pred cc--------------chHHHHHHHHhcCCCccCccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEe
Q 038045 118 DY--------------DTLLENVRDLREGKPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSV 183 (621)
Q Consensus 118 d~--------------~tV~enL~~L~~gk~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~V 183 (621)
.. ..+.+.+..+.. ..++ ...+|+|++|+ +|+++.+|.+++ ++.||+..
T Consensus 166 ~~ti~~~ni~~~~~~~~~~~~~i~~~L~------~gld--g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~-- 228 (305)
T 2v9p_A 166 LASLADTRAALVDDATHACWRYFDTYLR------NALD--GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQA-- 228 (305)
T ss_dssp GGGGTTCSCEEEEEECHHHHHHHHHTTT------GGGG--TCCEECCCSSC---CCCEECCCCEEE----EESSCSTT--
T ss_pred cccHHHHhhccCccccHHHHHHHHHHhH------ccCC--ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHH--
Confidence 11 123333333110 0122 45789999999 899999999988 88999731
Q ss_pred cCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 184 TGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 184 d~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
.. .+ . .++|+.. .+..+|++ ++.+|.+...++..++
T Consensus 229 --~~--~i-~--------------~ltH~~~-----~~~~aD~i-vl~~G~iv~~g~~~el 264 (305)
T 2v9p_A 229 --ED--RY-L--------------YLHSRVQ-----TFRFEQPC-TDESGEQPFNITDADW 264 (305)
T ss_dssp --CG--GG-G--------------GGTTTEE-----EEECCCCC-CCC---CCCCCCHHHH
T ss_pred --HH--HH-H--------------HHhCCHH-----HHHhCCEE-EEeCCEEEEeCCHHHH
Confidence 11 11 0 1366643 23567888 9999988776665543
No 83
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.24 E-value=5e-13 Score=138.50 Aligned_cols=141 Identities=15% Similarity=0.010 Sum_probs=100.4
Q ss_pred EeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc-------------cccccccCCCCc-c
Q 038045 52 IRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS-------------SRVVDGNFDDPR-L 116 (621)
Q Consensus 52 Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~-------------~R~Ig~vfQdp~-l 116 (621)
+..++|.+++|+ +++|+|||||||||++++|+|++ |..|.|.++|.... ++.+++++|++. +
T Consensus 90 ~~~l~~~~~~g~---vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~ 166 (302)
T 3b9q_A 90 KTELQLGFRKPA---VIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA 166 (302)
T ss_dssp CCSCCCCSSSCE---EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CC
T ss_pred ccccccccCCCc---EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCcc
Confidence 356788888999 99999999999999999999999 88899998875321 135889999998 8
Q ss_pred cccchHHHHHHHHhc-CCCc---c---Cccc-cccccCccCCceeecCCccEEEEecc--eeccccccCCCCeeEEecCC
Q 038045 117 TDYDTLLENVRDLRE-GKPV---Q---VPIY-DFESSSRTGYRTVEVPSSRIVIIEGI--YALSEKLRPLLDLRVSVTGG 186 (621)
Q Consensus 117 ~d~~tV~enL~~L~~-gk~V---~---~p~y-d~~~~~rsggq~qrVa~ArVLIvEG~--lLLlDEp~s~LDlkV~Vd~~ 186 (621)
++..++.+++..... +... . ...+ +....+++ ++++..+++++.+|. ++++| |+..+|..
T Consensus 167 ~~~~~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~------ 236 (302)
T 3b9q_A 167 KAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNML------ 236 (302)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGH------
T ss_pred CHHHHHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHH------
Confidence 999999999987432 2111 0 0000 01112222 567777888888999 99999 99999963
Q ss_pred chHHHHHHHHHHHHHcCCCceehHh
Q 038045 187 VHFDLVKRVLRDIQRVGQEPEEIIQ 211 (621)
Q Consensus 187 ~d~~LirRI~Rdl~erG~Ti~~VtH 211 (621)
.. +.+...+.|.|.+.++|
T Consensus 237 ---~~---~~~~~~~~g~t~iiiTh 255 (302)
T 3b9q_A 237 ---PQ---AREFNEVVGITGLILTK 255 (302)
T ss_dssp ---HH---HHHHHHHTCCCEEEEEC
T ss_pred ---HH---HHHHHHhcCCCEEEEeC
Confidence 11 22233456999999998
No 84
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.18 E-value=3.4e-13 Score=127.32 Aligned_cols=86 Identities=17% Similarity=0.074 Sum_probs=70.9
Q ss_pred ecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccccc--ccccccCCCCcc
Q 038045 39 QDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNYNDSS--RVVDGNFDDPRL 116 (621)
Q Consensus 39 ~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~~~~~--R~Ig~vfQdp~l 116 (621)
.+++++.+|...+++++||.+++|+ +++|+||||||||||+++|+|++|..|.|.++|+.... ....++||++.+
T Consensus 10 ~~~~~~~~g~~~~l~~vsl~i~~Ge---~v~L~G~nGaGKTTLlr~l~g~l~~~G~V~~~g~~i~~~~~~~~~~~q~~~l 86 (158)
T 1htw_A 10 DEFSMLRFGKKFAEILLKLHTEKAI---MVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLVEEYNIAGKMIYHFDL 86 (158)
T ss_dssp SHHHHHHHHHHHHHHHHHHCCSSCE---EEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTTCEEEEEETTEEEEEEEC
T ss_pred CHHHHHHHHHHHHHhccccccCCCC---EEEEECCCCCCHHHHHHHHHHhCCCCCeEEECCEeeeeeccCCCcceecccc
Confidence 3445566677778999999999999 99999999999999999999999888999999874321 112378999988
Q ss_pred cccchHHHHHHH
Q 038045 117 TDYDTLLENVRD 128 (621)
Q Consensus 117 ~d~~tV~enL~~ 128 (621)
| .+++.+++.+
T Consensus 87 ~-~ltv~e~l~~ 97 (158)
T 1htw_A 87 Y-RLADPEELEF 97 (158)
T ss_dssp T-TCSCTTHHHH
T ss_pred c-cCCcHHHHHH
Confidence 8 8899888865
No 85
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.16 E-value=2.3e-12 Score=136.96 Aligned_cols=140 Identities=15% Similarity=0.009 Sum_probs=101.3
Q ss_pred eecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc-------------cccccccCCCCc-cc
Q 038045 53 RACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS-------------SRVVDGNFDDPR-LT 117 (621)
Q Consensus 53 k~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~-------------~R~Ig~vfQdp~-l~ 117 (621)
..++|.+++|+ +++|+|||||||||++++|++++ |..|.|.+++.... ++.+++++|++. ++
T Consensus 148 ~~l~l~~~~g~---vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPA---VIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSE---EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCe---EEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 46788888999 99999999999999999999999 78899998875321 135889999998 89
Q ss_pred ccchHHHHHHHHhc-CCCcc------Cccc-cccccCccCCceeecCCccEEEEecc--eeccccccCCCCeeEEecCCc
Q 038045 118 DYDTLLENVRDLRE-GKPVQ------VPIY-DFESSSRTGYRTVEVPSSRIVIIEGI--YALSEKLRPLLDLRVSVTGGV 187 (621)
Q Consensus 118 d~~tV~enL~~L~~-gk~V~------~p~y-d~~~~~rsggq~qrVa~ArVLIvEG~--lLLlDEp~s~LDlkV~Vd~~~ 187 (621)
+..++.+++..... +.... ...+ +....+++ ++++..+++++.+|. ++++| |+..+|..
T Consensus 225 p~~tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~------- 293 (359)
T 2og2_A 225 AATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNML------- 293 (359)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGH-------
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHH-------
Confidence 99999999987432 21110 0000 01112222 466777888888898 89999 99999963
Q ss_pred hHHHHHHHHHHHHHcCCCceehHh
Q 038045 188 HFDLVKRVLRDIQRVGQEPEEIIQ 211 (621)
Q Consensus 188 d~~LirRI~Rdl~erG~Ti~~VtH 211 (621)
.. +.+...+.|.|.+.++|
T Consensus 294 --~~---~~~~~~~~g~t~iiiTh 312 (359)
T 2og2_A 294 --PQ---AREFNEVVGITGLILTK 312 (359)
T ss_dssp --HH---HHHHHHHTCCCEEEEES
T ss_pred --HH---HHHHHHhcCCeEEEEec
Confidence 11 22233456999999999
No 86
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=99.15 E-value=1.5e-11 Score=118.51 Aligned_cols=132 Identities=20% Similarity=0.347 Sum_probs=77.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEE---CCcccccc---cccccC--C-CCcccccchHHHHH-HHHhcCCC
Q 038045 66 ILIGLAGPSGAGKTIFTEKILNFM-PSIAVISM---DNYNDSSR---VVDGNF--D-DPRLTDYDTLLENV-RDLREGKP 134 (621)
Q Consensus 66 iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~l---Dg~~~~~R---~Ig~vf--Q-dp~l~d~~tV~enL-~~L~~gk~ 134 (621)
.++||+|+||||||||+++|++.+ +..|.|.+ |.+..... ..+... + .+..++...+.+.+ ..+..+..
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~v~~~l~~~~~ 102 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQWDVEWLTHQLFRQLKASHQ 102 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSSSSSCHHHHHHHTSSCHHHHHHHTGGGTTTCSE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHHHHHhcCCCCccCCCccccCHHHHHHHHHHHHhcCCc
Confidence 399999999999999999999987 44444433 44432210 011000 0 01234555555554 33445556
Q ss_pred ccCccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHH
Q 038045 135 VQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRD 198 (621)
Q Consensus 135 V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rd 198 (621)
+.+|.|++....... .........++|+||.+++.++....+|..||++++.+.++.|.+.|+
T Consensus 103 ~~~~~~~~~~~~~~~-~~~~~~~~~~vIveg~~l~~~~~~~~~d~~i~v~~~~~~~~~R~~~R~ 165 (201)
T 1rz3_A 103 LTLPFYDHETDTHSK-RTVYLSDSDMIMIEGVFLQRKEWRPFFDFVVYLDCPREIRFARENDQV 165 (201)
T ss_dssp EEEEEEETTTTEEEE-EEEECTTCSEEEEEETTTTSTTTGGGCSEEEEECCC------------
T ss_pred cccCceeccCCCCCC-ceEEeCCCcEEEEechhhccHHHHhhcCEEEEEeCCHHHHHHHHhcCC
Confidence 777778776332221 223345678999999998888888889999999999988776666654
No 87
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.15 E-value=3.6e-13 Score=140.96 Aligned_cols=131 Identities=14% Similarity=0.091 Sum_probs=91.1
Q ss_pred EEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccccccccccCCCCcccccchHHHHHHH
Q 038045 50 VVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDSSRVVDGNFDDPRLTDYDTLLENVRD 128 (621)
Q Consensus 50 ~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~~R~Ig~vfQdp~l~d~~tV~enL~~ 128 (621)
.+++++++.+++|+ +++|+||||||||||+++|+|++ |+.|.|.++|..... ..+.......
T Consensus 159 ~~l~~l~~~i~~g~---~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~-----~~~~~~~i~~--------- 221 (330)
T 2pt7_A 159 QAISAIKDGIAIGK---NVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIV-----FKHHKNYTQL--------- 221 (330)
T ss_dssp HHHHHHHHHHHHTC---CEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCC-----CSSCSSEEEE---------
T ss_pred HHHhhhhhhccCCC---EEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccc-----cccchhEEEE---------
Confidence 37899999999999 99999999999999999999999 899999999853211 0000000000
Q ss_pred HhcCCCccCccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCcee
Q 038045 129 LREGKPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEE 208 (621)
Q Consensus 129 L~~gk~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~ 208 (621)
+ .+ +|+++++..++++..+|.+++.|||++. +.. .+.+.+...+.+...
T Consensus 222 -----------~---~g---gg~~~r~~la~aL~~~p~ilildE~~~~-------------e~~-~~l~~~~~g~~tvi~ 270 (330)
T 2pt7_A 222 -----------F---FG---GNITSADCLKSCLRMRPDRIILGELRSS-------------EAY-DFYNVLCSGHKGTLT 270 (330)
T ss_dssp -----------E---CB---TTBCHHHHHHHHTTSCCSEEEECCCCST-------------HHH-HHHHHHHTTCCCEEE
T ss_pred -----------E---eC---CChhHHHHHHHHhhhCCCEEEEcCCChH-------------HHH-HHHHHHhcCCCEEEE
Confidence 0 00 6788899999999999999999999861 112 233344433457899
Q ss_pred hHhHHHHHhccccccchhhhcCCCC
Q 038045 209 IIQQISETSAKNLSVDQIKAVYPEG 233 (621)
Q Consensus 209 VtHd~eea~~R~v~~~d~iavl~eg 233 (621)
++|+.. +. ..+|++.++..+
T Consensus 271 t~H~~~-~~----~~~dri~~l~~g 290 (330)
T 2pt7_A 271 TLHAGS-SE----EAFIRLANMSSS 290 (330)
T ss_dssp EEECSS-HH----HHHHHHHHHHHT
T ss_pred EEcccH-HH----HHhhhheehhcC
Confidence 999865 22 344555555444
No 88
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.09 E-value=4.8e-13 Score=144.54 Aligned_cols=127 Identities=8% Similarity=0.083 Sum_probs=83.0
Q ss_pred EEEeecceEEeCCC-----------------cceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccccccccccC
Q 038045 50 VVIRACQLLAQKND-----------------GIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDSSRVVDGNF 111 (621)
Q Consensus 50 ~~Lk~IsL~I~~Ge-----------------~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~~R~Ig~vf 111 (621)
.++++|++.+++|+ +..++||+||||||||||+++|+|+. |..|.|.+++....+ .+++|
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~--~~~v~ 114 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTM--ERHPY 114 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----C--CCEEE
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecce--eEEec
Confidence 46889999999998 45589999999999999999999999 889999888753322 26677
Q ss_pred CCCcccccchHHHHHHHHhcCC-------CccCccccccccCccCC--ceeecCCccEEEE----------ecceecccc
Q 038045 112 DDPRLTDYDTLLENVRDLREGK-------PVQVPIYDFESSSRTGY--RTVEVPSSRIVII----------EGIYALSEK 172 (621)
Q Consensus 112 Qdp~l~d~~tV~enL~~L~~gk-------~V~~p~yd~~~~~rsgg--q~qrVa~ArVLIv----------EG~lLLlDE 172 (621)
|++ .++..++.+++....... .+.+..++.... .++| +++++..+++++. ++.++++||
T Consensus 115 q~~-~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDE 192 (413)
T 1tq4_A 115 KHP-NIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNE 192 (413)
T ss_dssp ECS-SCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHH
T ss_pred ccc-ccCCeeehHhhcccchHHHHHHHHHHcCCCccCCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCc
Confidence 664 233333333322111000 011122222222 5666 7777766555444 889999999
Q ss_pred ccCCCCee
Q 038045 173 LRPLLDLR 180 (621)
Q Consensus 173 p~s~LDlk 180 (621)
|++.+|+.
T Consensus 193 PtsgLD~~ 200 (413)
T 1tq4_A 193 ADGEPQTF 200 (413)
T ss_dssp HTTCCTTC
T ss_pred ccccCCHH
Confidence 99999974
No 89
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.09 E-value=5.4e-12 Score=120.88 Aligned_cols=123 Identities=10% Similarity=0.043 Sum_probs=80.1
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCcc-------cccccccccCCCCcccccchHHHHHHHHhcCCCccCcc
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNYN-------DSSRVVDGNFDDPRLTDYDTLLENVRDLREGKPVQVPI 139 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~~-------~~~R~Ig~vfQdp~l~d~~tV~enL~~L~~gk~V~~p~ 139 (621)
.++|+||||||||||+++|+|+++ |.++|+. ...+.+++++|++..... + +........+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~----i~~~g~~~~~~~~~~~~~~ig~~~~~~~~~~~------~--~~~~~~~~~~~ 69 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG----KRAIGFWTEEVRDPETKKRTGFRIITTEGKKK------I--FSSKFFTSKKL 69 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG----GGEEEEEEEEEC------CCEEEEEETTCCEE------E--EEETTCCCSSE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC----CcCCCEEhhhhccccccceeEEEeecCcHHHH------H--HHhhcCCcccc
Confidence 689999999999999999999982 3334431 123467888887622111 1 00000000012
Q ss_pred ccccccCccCCceeecCCccE-----EEEecceecccc--ccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHh
Q 038045 140 YDFESSSRTGYRTVEVPSSRI-----VIIEGIYALSEK--LRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQ 211 (621)
Q Consensus 140 yd~~~~~rsggq~qrVa~ArV-----LIvEG~lLLlDE--p~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtH 211 (621)
.+.....+|+|+++++..+++ ++.++.++++|| |++.+|+. ....+.+.+.+.+.+++.++|
T Consensus 70 ~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~----------~~~~l~~~l~~~~~~~i~~~H 138 (178)
T 1ye8_A 70 VGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKK----------FRDLVRQIMHDPNVNVVATIP 138 (178)
T ss_dssp ETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHH----------HHHHHHHHHTCTTSEEEEECC
T ss_pred ccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHH----------HHHHHHHHHhcCCCeEEEEEc
Confidence 334456788999999999996 899999999999 99999962 333444444445666777775
No 90
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.05 E-value=2.9e-12 Score=124.79 Aligned_cols=151 Identities=8% Similarity=0.007 Sum_probs=77.5
Q ss_pred EEeCCCcceEEEEECCCCCcHHHHHHHHH--hhC-CCeeEEEECCcccc------cccccccCCCCcccccchHHHHHHH
Q 038045 58 LAQKNDGIILIGLAGPSGAGKTIFTEKIL--NFM-PSIAVISMDNYNDS------SRVVDGNFDDPRLTDYDTLLENVRD 128 (621)
Q Consensus 58 ~I~~Ge~~iIVGI~GpSGSGKSTLlr~La--gLl-P~sGvI~lDg~~~~------~R~Ig~vfQdp~l~d~~tV~enL~~ 128 (621)
.+++|+ +++|+||||||||||+++|+ ++. ++.+.+.+++.... .+.+++.+|++..++..++.++...
T Consensus 26 gi~~G~---~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 102 (251)
T 2ehv_A 26 GFPEGT---TVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSS 102 (251)
T ss_dssp SEETTC---EEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC----
T ss_pred CCCCCc---EEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEcccc
Confidence 488999 99999999999999999999 663 56667776654221 1346666665432222222222111
Q ss_pred HhcCCCccCccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCcee
Q 038045 129 LREGKPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEE 208 (621)
Q Consensus 129 L~~gk~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~ 208 (621)
..... .. ..+... ......+........+-..++.+++.|||+..+|.. .+.....+.+..+.+.+++.|.|++.
T Consensus 103 ~~~~~-~~-~~~~~~-~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~--~d~~~~~~~l~~l~~~l~~~g~tii~ 177 (251)
T 2ehv_A 103 VVGLP-SE-EKFVLE-DRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRL--EEERKIREVLLKLNTILLEMGVTTIL 177 (251)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHS--SSGGGHHHHHHHHHHHHHHHCCEEEE
T ss_pred ccccc-cc-cceecc-CcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhc--CCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 00000 00 000000 000000000000000001346677778887777621 12223334567777777888999999
Q ss_pred hHhHHHHH
Q 038045 209 IIQQISET 216 (621)
Q Consensus 209 VtHd~eea 216 (621)
++|+..++
T Consensus 178 vtH~~~~~ 185 (251)
T 2ehv_A 178 TTEAPDPQ 185 (251)
T ss_dssp EECCC---
T ss_pred EECCCCCC
Confidence 99998776
No 91
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.00 E-value=6.1e-11 Score=123.01 Aligned_cols=139 Identities=11% Similarity=0.006 Sum_probs=88.9
Q ss_pred CCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc-------------cccccccCCCCcccccchHHHHH
Q 038045 61 KNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS-------------SRVVDGNFDDPRLTDYDTLLENV 126 (621)
Q Consensus 61 ~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~-------------~R~Ig~vfQdp~l~d~~tV~enL 126 (621)
+|+ +++|+||||||||||+++|++++ |..|.|.++|.... ++.++++||++.+++..++.+++
T Consensus 101 ~g~---vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGR---VVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSS---EEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCe---EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 456 99999999999999999999999 88899999875321 13578999999999999999999
Q ss_pred HHHh-cCCCc---cCccccc-cccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHH
Q 038045 127 RDLR-EGKPV---QVPIYDF-ESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQR 201 (621)
Q Consensus 127 ~~L~-~gk~V---~~p~yd~-~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~e 201 (621)
.... .+... ..+...+ ..........+++..+|+++.+|..+++ .+|. .........+.+...+
T Consensus 178 ~~~~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa------~t~~~~~~~~~~~~~~ 246 (304)
T 1rj9_A 178 QAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWL-----VLDA------VTGQNGLEQAKKFHEA 246 (304)
T ss_dssp HHHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEE-----EEET------TBCTHHHHHHHHHHHH
T ss_pred HHHHhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEE-----EEcH------HHHHHHHHHHHHHHHH
Confidence 8643 22111 1111100 0000111124455666666666653332 2332 2223444445444556
Q ss_pred cCCCceehHhHH
Q 038045 202 VGQEPEEIIQQI 213 (621)
Q Consensus 202 rG~Ti~~VtHd~ 213 (621)
.|.|.+.++|.-
T Consensus 247 ~~~t~iivTh~d 258 (304)
T 1rj9_A 247 VGLTGVIVTKLD 258 (304)
T ss_dssp HCCSEEEEECTT
T ss_pred cCCcEEEEECCc
Confidence 699999999983
No 92
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.97 E-value=4.9e-12 Score=121.66 Aligned_cols=144 Identities=11% Similarity=0.042 Sum_probs=81.1
Q ss_pred EeCCCcceEEEEECCCCCcHHHHHHHHHhhC-C-------CeeEEEECCccc-ccccccccCCCCcccccchHHHHHHHH
Q 038045 59 AQKNDGIILIGLAGPSGAGKTIFTEKILNFM-P-------SIAVISMDNYND-SSRVVDGNFDDPRLTDYDTLLENVRDL 129 (621)
Q Consensus 59 I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P-------~sGvI~lDg~~~-~~R~Ig~vfQdp~l~d~~tV~enL~~L 129 (621)
+++|+ +++|+||||||||||+++|++.. + ..+.+++++... ..+.+++++|...+++. ++.+|+...
T Consensus 22 i~~G~---~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~ 97 (231)
T 4a74_A 22 IETQA---ITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPD-EVLKHIYVA 97 (231)
T ss_dssp EESSE---EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSCHH-HHHHTEEEE
T ss_pred CCCCc---EEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCHH-HHhhcEEEE
Confidence 88999 99999999999999999999966 4 445888887543 22356677776665543 555554332
Q ss_pred hcCCCccCccccccccCccCCceeecCCccEE--EEecceeccccccCCCCeeEEecCCch------HHHHHHHHHHHHH
Q 038045 130 REGKPVQVPIYDFESSSRTGYRTVEVPSSRIV--IIEGIYALSEKLRPLLDLRVSVTGGVH------FDLVKRVLRDIQR 201 (621)
Q Consensus 130 ~~gk~V~~p~yd~~~~~rsggq~qrVa~ArVL--IvEG~lLLlDEp~s~LDlkV~Vd~~~d------~~LirRI~Rdl~e 201 (621)
........ ....... ...+. +.+ ..++.+++.|||+..+|....-..+.. .++++.+.+..++
T Consensus 98 ~~~~~~~~---~~~~~~~----~~~~~--~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~ 168 (231)
T 4a74_A 98 RAFNSNHQ---MLLVQQA----EDKIK--ELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANL 168 (231)
T ss_dssp ECCSHHHH---HHHHHHH----HHHHH--HHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCChHHH---HHHHHHH----HHHHH--HhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHH
Confidence 11000000 0000000 00000 000 124566777888877775321110011 1355556666667
Q ss_pred cCCCceehHhHHHH
Q 038045 202 VGQEPEEIIQQISE 215 (621)
Q Consensus 202 rG~Ti~~VtHd~ee 215 (621)
.|.|++.++|...+
T Consensus 169 ~g~tvi~vtH~~~~ 182 (231)
T 4a74_A 169 YDIAVFVTNQVQAN 182 (231)
T ss_dssp HTCEEEEEEECC--
T ss_pred CCCeEEEEeecccC
Confidence 79999999996544
No 93
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.94 E-value=9.5e-11 Score=132.02 Aligned_cols=131 Identities=8% Similarity=-0.031 Sum_probs=77.5
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC-C-CeeEEEECCcc----------cccccccccCCCCcccccchHHHHHHHHhcCCC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFM-P-SIAVISMDNYN----------DSSRVVDGNFDDPRLTDYDTLLENVRDLREGKP 134 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLl-P-~sGvI~lDg~~----------~~~R~Ig~vfQdp~l~d~~tV~enL~~L~~gk~ 134 (621)
.+||+||||||||||+++|+|++ | +.|.|.++|.. ...+.++|+||++.+++..++.+++........
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~ 126 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIA 126 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHH
T ss_pred eEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhc
Confidence 39999999999999999999998 8 79999998863 123568999999999999999999987431100
Q ss_pred ccCccccccccCccCCceeecCCccEEEEecceeccccc------cCCCCeeEEecCCchHHHHHHHHHHHHH--cCCCc
Q 038045 135 VQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKL------RPLLDLRVSVTGGVHFDLVKRVLRDIQR--VGQEP 206 (621)
Q Consensus 135 V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp------~s~LDlkV~Vd~~~d~~LirRI~Rdl~e--rG~Ti 206 (621)
... ...+ ...+.........|.+++.||| +..+|.. ....++.+.+.+.. .+..+
T Consensus 127 ~~~-------~~~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~-------~~~~i~~li~~~l~~~~~iil 189 (608)
T 3szr_A 127 GEG-------MGIS---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPAD-------IGYKIKTLIKKYIQRQETISL 189 (608)
T ss_dssp CSS-------SCCC---SCCEEEEEEESSSCCEEEEECCC------CCSSCS-------HHHHHHHHHHHHTTSSSCCEE
T ss_pred CCc-------cccc---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHH-------HHHHHHHHHHHHHhcCCCCce
Confidence 000 0000 0011111111225778889999 8888862 22344445444322 35666
Q ss_pred eehHhHHH
Q 038045 207 EEIIQQIS 214 (621)
Q Consensus 207 ~~VtHd~e 214 (621)
..++|+..
T Consensus 190 ~vvt~~~d 197 (608)
T 3szr_A 190 VVVPSNVD 197 (608)
T ss_dssp EEEESSSC
T ss_pred EEEeccch
Confidence 77777754
No 94
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=98.94 E-value=5.4e-11 Score=125.92 Aligned_cols=82 Identities=12% Similarity=-0.004 Sum_probs=63.2
Q ss_pred ccccCccCCceeecCCccEEE------EecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHH
Q 038045 142 FESSSRTGYRTVEVPSSRIVI------IEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISE 215 (621)
Q Consensus 142 ~~~~~rsggq~qrVa~ArVLI------vEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~ee 215 (621)
.....+|+|++|++.++++++ .+|.++++|||++.||+. ....+..+.+.+.+.|.|++.|+|+++.
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~-------~~~~~~~~l~~l~~~g~tvi~itH~~~~ 347 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTE-------NKEKIASVLKELERLNKVIVFITHDREF 347 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHH-------HHHHHHHHHHGGGGSSSEEEEEESCHHH
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHH-------HHHHHHHHHHHHHhCCCEEEEEecchHH
Confidence 345679999999999988888 599999999999999972 3344445555555679999999999986
Q ss_pred HhccccccchhhhcCCCCce
Q 038045 216 TSAKNLSVDQIKAVYPEGHT 235 (621)
Q Consensus 216 a~~R~v~~~d~iavl~eg~I 235 (621)
. ..+|++.++.+|.+
T Consensus 348 ~-----~~~d~~~~l~~G~i 362 (365)
T 3qf7_A 348 S-----EAFDRKLRITGGVV 362 (365)
T ss_dssp H-----TTCSCEEEEETTEE
T ss_pred H-----HhCCEEEEEECCEE
Confidence 3 34566667776654
No 95
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.91 E-value=4.5e-11 Score=121.26 Aligned_cols=125 Identities=15% Similarity=0.187 Sum_probs=84.0
Q ss_pred ecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CC-eeEEEECCcccccccccccCCCCcc
Q 038045 39 QDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PS-IAVISMDNYNDSSRVVDGNFDDPRL 116 (621)
Q Consensus 39 ~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~-sGvI~lDg~~~~~R~Ig~vfQdp~l 116 (621)
.++++|. .+|++++ +++|+ +++|+||||||||||+++|++++ |. .|.|.++|.. +.++++++..
T Consensus 8 l~~l~~~----~vl~~i~--i~~g~---~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~-----i~~~~~~~~~ 73 (261)
T 2eyu_A 8 FKKLGLP----DKVLELC--HRKMG---LILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP-----IEYVFKHKKS 73 (261)
T ss_dssp GGGSSCC----THHHHGG--GCSSE---EEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS-----CCSCCCCSSS
T ss_pred hHHCCCH----HHHHHHh--hCCCC---EEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc-----ceeecCCcce
Confidence 3445443 4788998 88999 99999999999999999999998 66 8999888742 3444444321
Q ss_pred cccchHHHHHHHHhcCCCccCccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHH
Q 038045 117 TDYDTLLENVRDLREGKPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVL 196 (621)
Q Consensus 117 ~d~~tV~enL~~L~~gk~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~ 196 (621)
+-.. ..+... . ...++..++++..+|.+++.|||+ |. .....+.
T Consensus 74 ~v~q------------~~~gl~-----~------~~l~~~la~aL~~~p~illlDEp~---D~----------~~~~~~l 117 (261)
T 2eyu_A 74 IVNQ------------REVGED-----T------KSFADALRAALREDPDVIFVGEMR---DL----------ETVETAL 117 (261)
T ss_dssp EEEE------------EEBTTT-----B------SCHHHHHHHHHHHCCSEEEESCCC---SH----------HHHHHHH
T ss_pred eeeH------------HHhCCC-----H------HHHHHHHHHHHhhCCCEEEeCCCC---CH----------HHHHHHH
Confidence 1000 001000 0 122566788888899999999998 54 1223333
Q ss_pred HHHHHcCCCceehHhHHH
Q 038045 197 RDIQRVGQEPEEIIQQIS 214 (621)
Q Consensus 197 Rdl~erG~Ti~~VtHd~e 214 (621)
+.. ..|.++..++|+..
T Consensus 118 ~~~-~~g~~vl~t~H~~~ 134 (261)
T 2eyu_A 118 RAA-ETGHLVFGTLHTNT 134 (261)
T ss_dssp HHH-HTTCEEEEEECCSS
T ss_pred HHH-ccCCEEEEEeCcch
Confidence 433 56999999999854
No 96
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.91 E-value=4.5e-11 Score=131.85 Aligned_cols=66 Identities=12% Similarity=0.056 Sum_probs=55.7
Q ss_pred CcEEEEeecce-EEeCCCcceEEEEECCCCCcHHHHHHH--HHhhC-CCeeEEEECCccc------ccccccccCCCCc
Q 038045 47 GFFVVIRACQL-LAQKNDGIILIGLAGPSGAGKTIFTEK--ILNFM-PSIAVISMDNYND------SSRVVDGNFDDPR 115 (621)
Q Consensus 47 G~~~~Lk~IsL-~I~~Ge~~iIVGI~GpSGSGKSTLlr~--LagLl-P~sGvI~lDg~~~------~~R~Ig~vfQdp~ 115 (621)
+...+|++|++ .+++|+ +++|+||||||||||+++ ++|+. |+.|.|.+++... ..+.+|++||++.
T Consensus 23 ~g~~~Ld~i~~G~i~~Ge---~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~ 98 (525)
T 1tf7_A 23 TMIEGFDDISHGGLPIGR---STLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLV 98 (525)
T ss_dssp CCCTTHHHHTTSSEETTS---EEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHH
T ss_pred CCchhHHHhcCCCCCCCe---EEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhh
Confidence 44568999999 999999 999999999999999999 68988 6899999998642 1246889988764
No 97
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.90 E-value=2.3e-11 Score=128.47 Aligned_cols=177 Identities=16% Similarity=0.085 Sum_probs=105.2
Q ss_pred ecceeeeeC-cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc-------------
Q 038045 39 QDPLSFEKG-FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS------------- 103 (621)
Q Consensus 39 ~~~lsf~~G-~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~------------- 103 (621)
.+++++.++ ...+++++ |.+.+|+ ++||+||||||||||+++|+|+. |+.|+|.+.|....
T Consensus 48 ~~~l~~~~~tg~~ald~l-l~i~~Gq---~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~~ 123 (347)
T 2obl_A 48 RQVIDQPFILGVRAIDGL-LTCGIGQ---RIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQST 123 (347)
T ss_dssp CCCCCSEECCSCHHHHHH-SCEETTC---EEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHHH
T ss_pred ecccceecCCCCEEEEee-eeecCCC---EEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhhh
Confidence 345555565 56799999 9999999 99999999999999999999999 89999998875310
Q ss_pred -cccccccCCCCc-ccccchHHHHHHHH----hc-CCCccCccccccccCccCCceeecCCccEEEEecceeccccccCC
Q 038045 104 -SRVVDGNFDDPR-LTDYDTLLENVRDL----RE-GKPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPL 176 (621)
Q Consensus 104 -~R~Ig~vfQdp~-l~d~~tV~enL~~L----~~-gk~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~ 176 (621)
.+.+.++++... ......+..+...+ .. ++.+. ..-....+.++++ ++++.+ +.+| ..+..
T Consensus 124 ~~~~v~~~~~~~~~~~~r~~~~~~~~~~ae~~~~~~~~vl--~~ld~~~~lS~g~-r~v~la---l~~p------~~t~G 191 (347)
T 2obl_A 124 LSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVL--LMMDSVTRYARAA-RDVGLA---SGEP------DVRGG 191 (347)
T ss_dssp HTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEE--EEEETHHHHHHHH-HHHHHH---TTCC------CCBTT
T ss_pred hhceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhccccHH--HHHhhHHHHHHHH-HHHHHH---cCCC------CcccC
Confidence 112334443321 11122222221111 11 11110 0012234456666 566554 1222 22678
Q ss_pred CCeeEEecCCchHHHHHHHHHHHH--HcCC-----CceehHhHHHHHhccccccchhhhcCCCCceeeccCceeE
Q 038045 177 LDLRVSVTGGVHFDLVKRVLRDIQ--RVGQ-----EPEEIIQQISETSAKNLSVDQIKAVYPEGHTETMEQTYDI 244 (621)
Q Consensus 177 LDlkV~Vd~~~d~~LirRI~Rdl~--erG~-----Ti~~VtHd~eea~~R~v~~~d~iavl~eg~Ie~~~~~aDI 244 (621)
+|+.. ...+.++.+... +.|. |+..++|++. . .++|.+..+.+|.+.-.+..+++
T Consensus 192 ldp~~-------~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~----~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 192 FPPSV-------FSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--D----PIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp BCHHH-------HHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--C----HHHHHHHHHCSEEEEBCHHHHTT
T ss_pred CCHHH-------HHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--C----hhhhheEEeeCcEEEEeCCHHHc
Confidence 88632 223333333332 2365 7888899976 2 56788888888888776666655
No 98
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.85 E-value=1.8e-10 Score=118.75 Aligned_cols=151 Identities=12% Similarity=0.052 Sum_probs=69.5
Q ss_pred cceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhh-C-CCeeEEEECCcccc----cccccccCCC
Q 038045 40 DPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNF-M-PSIAVISMDNYNDS----SRVVDGNFDD 113 (621)
Q Consensus 40 ~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagL-l-P~sGvI~lDg~~~~----~R~Ig~vfQd 113 (621)
.++++.+|.+.++++++|.+ +|+|+||||||||+++|.|. + |..| |.++|.... .+.+++++|.
T Consensus 2 ~~l~~~~~~~~~l~~~~~~I---------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~ 71 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFTL---------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEE 71 (301)
T ss_dssp ----------------CEEE---------EEEEETTSSHHHHHHHHHC-------------------------CEEEEC-
T ss_pred CCCcceECCEEEEcCCCEEE---------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecC
Confidence 35677788888999998876 99999999999999999986 5 7777 766654221 1345667776
Q ss_pred CcccccchHHHHHHHHhc--CCCccCcc-------ccccccCccCCceeecCCccEEEEecceeccccccCC-CCeeEEe
Q 038045 114 PRLTDYDTLLENVRDLRE--GKPVQVPI-------YDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPL-LDLRVSV 183 (621)
Q Consensus 114 p~l~d~~tV~enL~~L~~--gk~V~~p~-------yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~-LDlkV~V 183 (621)
...+..++++++..+... ......+. ++......++++++++..+++++ +++.|||+.. ||+.
T Consensus 72 ~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~--- 144 (301)
T 2qnr_A 72 RGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPL--- 144 (301)
T ss_dssp --CCEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHH---
T ss_pred CCcccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHH---
Confidence 555444444444332110 00000011 11334567888889999988875 6778999764 8862
Q ss_pred cCCchHHHHHHHHHHHHHcCCCceehHhHHH
Q 038045 184 TGGVHFDLVKRVLRDIQRVGQEPEEIIQQIS 214 (621)
Q Consensus 184 d~~~d~~LirRI~Rdl~erG~Ti~~VtHd~e 214 (621)
+.++++++ ..+.+.+++...||+.
T Consensus 145 ----~~~~l~~l---~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 145 ----DVAFMKAI---HNKVNIVPVIAKADTL 168 (301)
T ss_dssp ----HHHHHHHH---TTTSCEEEEECCGGGS
T ss_pred ----HHHHHHHH---HhcCCEEEEEEeCCCC
Confidence 12233322 1223667777788863
No 99
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.83 E-value=1.3e-10 Score=134.38 Aligned_cols=129 Identities=12% Similarity=0.070 Sum_probs=84.7
Q ss_pred EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC--CCeeEEEECCcccccccccccCCCCcccccchHHHHH
Q 038045 49 FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM--PSIAVISMDNYNDSSRVVDGNFDDPRLTDYDTLLENV 126 (621)
Q Consensus 49 ~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl--P~sGvI~lDg~~~~~R~Ig~vfQdp~l~d~~tV~enL 126 (621)
..++++++|. |+ +++|+||||||||||+|+|+|+. +..|.+. ......++++++ +|...++.+++
T Consensus 566 ~~vl~disl~---g~---i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v----pa~~~~i~~v~~---i~~~~~~~d~l 632 (765)
T 1ewq_A 566 EFVPNDLEMA---HE---LVLITGPNMAGKSTFLRQTALIALLAQVGSFV----PAEEAHLPLFDG---IYTRIGASDDL 632 (765)
T ss_dssp CCCCEEEEES---SC---EEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB----SSSEEEECCCSE---EEEECCC----
T ss_pred ceEeeeccCC---Cc---EEEEECCCCCChHHHHHHHHhhhhhcccCcee----ehhccceeeHHH---hhccCCHHHHH
Confidence 4567899988 88 99999999999999999999976 4555431 112235677655 56666777776
Q ss_pred HHHhcCCCccCccccccccCccCCceeecCCccEE--EEecceeccccc---cCCCCeeEEecCCchHHHHHHHHHHHHH
Q 038045 127 RDLREGKPVQVPIYDFESSSRTGYRTVEVPSSRIV--IIEGIYALSEKL---RPLLDLRVSVTGGVHFDLVKRVLRDIQR 201 (621)
Q Consensus 127 ~~L~~gk~V~~p~yd~~~~~rsggq~qrVa~ArVL--IvEG~lLLlDEp---~s~LDlkV~Vd~~~d~~LirRI~Rdl~e 201 (621)
... .+.+..+.+..++++ +.++.++++||| ++.+|.. ...+.+.+.+.+
T Consensus 633 ~~g-----------------~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~---------~~~~~i~~~L~~ 686 (765)
T 1ewq_A 633 AGG-----------------KSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGV---------AIATAVAEALHE 686 (765)
T ss_dssp --C-----------------CSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHH---------HHHHHHHHHHHH
T ss_pred Hhc-----------------ccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHH---------HHHHHHHHHHHh
Confidence 531 122233334445556 778999999999 7778852 122344454555
Q ss_pred cCCCceehHhHHHHH
Q 038045 202 VGQEPEEIIQQISET 216 (621)
Q Consensus 202 rG~Ti~~VtHd~eea 216 (621)
.|.+++.++|+.+..
T Consensus 687 ~g~~vl~~TH~~~l~ 701 (765)
T 1ewq_A 687 RRAYTLFATHYFELT 701 (765)
T ss_dssp HTCEEEEECCCHHHH
T ss_pred CCCEEEEEeCCHHHH
Confidence 799999999997654
No 100
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.82 E-value=7.6e-10 Score=114.57 Aligned_cols=63 Identities=14% Similarity=0.070 Sum_probs=48.0
Q ss_pred cccCccCCceeecCCccEEE----EecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHH
Q 038045 143 ESSSRTGYRTVEVPSSRIVI----IEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQI 213 (621)
Q Consensus 143 ~~~~rsggq~qrVa~ArVLI----vEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~ 213 (621)
....+|+|+++++..+++++ -++.++++|||++.||+. ..+.+..+.+.+ ..|.+++.++|+.
T Consensus 216 ~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~-------~~~~l~~~l~~~-~~~~~vi~~tH~~ 282 (322)
T 1e69_A 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDY-------NAERFKRLLKEN-SKHTQFIVITHNK 282 (322)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHH-------HHHHHHHHHHHH-TTTSEEEEECCCT
T ss_pred chhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHH-------HHHHHHHHHHHh-cCCCeEEEEECCH
Confidence 35678999999999999886 467899999999999973 233444444444 3478899999994
No 101
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.81 E-value=6e-10 Score=105.73 Aligned_cols=64 Identities=22% Similarity=0.192 Sum_probs=45.3
Q ss_pred ceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccc-------ccccccccCCCCcccccchHHHH
Q 038045 56 QLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNYND-------SSRVVDGNFDDPRLTDYDTLLEN 125 (621)
Q Consensus 56 sL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~~~-------~~R~Ig~vfQdp~l~d~~tV~en 125 (621)
|+.+.+|+ ++||+||||||||||+++|++++| .+.+++... ....++|+||++..|+.+++.++
T Consensus 1 s~~m~~g~---ii~l~Gp~GsGKSTl~~~L~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (205)
T 3tr0_A 1 SNAMNKAN---LFIISAPSGAGKTSLVRALVKALA---EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGA 71 (205)
T ss_dssp ----CCCC---EEEEECCTTSCHHHHHHHHHHHSS---SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTC
T ss_pred CCcCCCCc---EEEEECcCCCCHHHHHHHHHhhCC---CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCc
Confidence 45677889 999999999999999999999986 355554321 12357899998877766655443
No 102
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.79 E-value=1.5e-08 Score=97.04 Aligned_cols=119 Identities=17% Similarity=0.280 Sum_probs=72.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCcccccccccc------cCCCCcccccchHHHHHHHHhcCCCccCc
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNYNDSSRVVDG------NFDDPRLTDYDTLLENVRDLREGKPVQVP 138 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~~~~~R~Ig~------vfQdp~l~d~~tV~enL~~L~~gk~V~~p 138 (621)
+.+|+|+|++||||||+++.|++.+++...|..|++......+.+ .++.+..++...+.+.+..+.... + .|
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~-~-~~ 98 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEIETDKNGFLQYDVLEALNMEKMMSAISCWMESA-R-HS 98 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCGGGSCBCTTSCBCCSSGGGBCHHHHHHHHHHHHHHH-T-TS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCHhHhhccccCCChhHHHHHhHHHHHHHHHHHHHhCC-C-CC
Confidence 349999999999999999999998767888999987543222211 111122233334444444332210 1 11
Q ss_pred cccccccCccCCceeecCCccEEEEecceeccc-cccCCCCeeEEecCCchHHHHH
Q 038045 139 IYDFESSSRTGYRTVEVPSSRIVIIEGIYALSE-KLRPLLDLRVSVTGGVHFDLVK 193 (621)
Q Consensus 139 ~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlD-Ep~s~LDlkV~Vd~~~d~~Lir 193 (621)
.. ..+.. ......++|+||.+++.+ .+...+|..++++++.+....|
T Consensus 99 ~~-------~~~~~-~~~~~~~vi~eg~~~~~~~~~~~~~d~~i~l~~~~~~~~~R 146 (207)
T 2qt1_A 99 VV-------STDQE-SAEEIPILIIEGFLLFNYKPLDTIWNRSYFLTIPYEECKRR 146 (207)
T ss_dssp SC-------CC------CCCCEEEEECTTCTTCGGGTTTCSEEEEEECCHHHHHHH
T ss_pred Cc-------CCCee-ecCCCCEEEEeehHHcCcHHHHHhcCeeEEEECCHHHHHHH
Confidence 11 11111 133467999999777654 4567889999999997765443
No 103
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.79 E-value=1.9e-10 Score=113.76 Aligned_cols=61 Identities=18% Similarity=0.150 Sum_probs=47.0
Q ss_pred EeCCCcceEEEEECCCCCcHHHHHHHHHhhCC---CeeEEEECCcccc---cccccccCCCCcccccchH
Q 038045 59 AQKNDGIILIGLAGPSGAGKTIFTEKILNFMP---SIAVISMDNYNDS---SRVVDGNFDDPRLTDYDTL 122 (621)
Q Consensus 59 I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP---~sGvI~lDg~~~~---~R~Ig~vfQdp~l~d~~tV 122 (621)
.++|+ +++|+||||||||||+++|+|++| ..|.|.+.+.... .+.++|+||++..|+.+++
T Consensus 13 ~~~G~---ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~ 79 (219)
T 1s96_A 13 MAQGT---LYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMIS 79 (219)
T ss_dssp --CCC---EEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHH
T ss_pred CCCCc---EEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHh
Confidence 67899 999999999999999999999994 4677877765322 2468899998877665544
No 104
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.77 E-value=1.4e-10 Score=117.61 Aligned_cols=157 Identities=13% Similarity=0.048 Sum_probs=81.2
Q ss_pred EEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCee--EEEECCcccc---cccccccCCCCcc--cccch
Q 038045 50 VVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIA--VISMDNYNDS---SRVVDGNFDDPRL--TDYDT 121 (621)
Q Consensus 50 ~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sG--vI~lDg~~~~---~R~Ig~vfQdp~l--~d~~t 121 (621)
.+|+++++.+++|+ +++|+||||||||||++.|++.+ |..| ++.++..... .+.+...++...+ ++..+
T Consensus 23 ~~Ld~i~~~l~~G~---~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~l~ 99 (296)
T 1cr0_A 23 TGINDKTLGARGGE---VIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLK 99 (296)
T ss_dssp TTHHHHHCSBCTTC---EEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCGGGCHHHH
T ss_pred HHHHHHhcCCCCCe---EEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCChhhccccc
Confidence 36889999999999 99999999999999999999998 6655 4444432211 1122223322221 11111
Q ss_pred HH--------HHHHHHhcCCCccCccccccccCccCCc-eeecCCccEEEEecceeccccccCCCCeeEEecCCchH-HH
Q 038045 122 LL--------ENVRDLREGKPVQVPIYDFESSSRTGYR-TVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHF-DL 191 (621)
Q Consensus 122 V~--------enL~~L~~gk~V~~p~yd~~~~~rsggq-~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~-~L 191 (621)
.. +.+..+.....+. ..+. ....+.++ .+++. +.++..++.+++.|||+..++..-..+..... .+
T Consensus 100 ~~~~~~~~~~~~~~~~l~~~~l~--i~~~-~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i 175 (296)
T 1cr0_A 100 REIIENGKFDQWFDELFGNDTFH--LYDS-FAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNL 175 (296)
T ss_dssp HHHHHHTHHHHHHHHHHSSSCEE--EECC-CCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHH
T ss_pred cCCCCHHHHHHHHHHHhccCCEE--EECC-CCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHH
Confidence 11 1111111111111 1111 11222222 22333 44456678888899998866431011211222 24
Q ss_pred HHHHHHHHHHcCCCceehHhHH
Q 038045 192 VKRVLRDIQRVGQEPEEIIQQI 213 (621)
Q Consensus 192 irRI~Rdl~erG~Ti~~VtHd~ 213 (621)
.+.+++..++.|.+++.++|..
T Consensus 176 ~~~L~~la~~~~~~vi~vsh~~ 197 (296)
T 1cr0_A 176 MTKLKGFAKSTGVVLVVICHLK 197 (296)
T ss_dssp HHHHHHHHHHHCCEEEEEEECC
T ss_pred HHHHHHHHHHhCCeEEEEEecC
Confidence 4444444456799999999994
No 105
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.77 E-value=1.8e-10 Score=136.83 Aligned_cols=145 Identities=10% Similarity=-0.026 Sum_probs=89.4
Q ss_pred eeeee-CcEEEEeecceEEeC-------CCcceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccccccccc-ccCC
Q 038045 42 LSFEK-GFFVVIRACQLLAQK-------NDGIILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNYNDSSRVVD-GNFD 112 (621)
Q Consensus 42 lsf~~-G~~~~Lk~IsL~I~~-------Ge~~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~~~~~R~Ig-~vfQ 112 (621)
+++.+ +...++++++|.+.+ |+ +++|+||||||||||+|+| |+++- ..++| |+||
T Consensus 761 l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~---i~~ItGpNgsGKSTlLr~i-Gl~~~------------~aqiG~~Vpq 824 (1022)
T 2o8b_B 761 ITKTFFGDDFIPNDILIGCEEEEQENGKAY---CVLVTGPNMGGKSTLMRQA-GLLAV------------MAQMGCYVPA 824 (1022)
T ss_dssp ------CCCCCCEEEEESCCCSCC---CCC---EEEEECCTTSSHHHHHHHH-HHHHH------------HHTTTCCEES
T ss_pred EEEEecCCceEeeeeeeccccccccCCCCc---EEEEECCCCCChHHHHHHH-HHHHH------------HhheeEEecc
Confidence 44444 556789999999987 78 9999999999999999999 88720 12344 6776
Q ss_pred CCcccccchHHHHHHHHhcCCCccCcc-ccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchHHH
Q 038045 113 DPRLTDYDTLLENVRDLREGKPVQVPI-YDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDL 191 (621)
Q Consensus 113 dp~l~d~~tV~enL~~L~~gk~V~~p~-yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~L 191 (621)
++. ..++.++|.. . +.... ........++ +...++.+..++.++.++++|||..++|+.- ....
T Consensus 825 ~~~---~l~v~d~I~~-r----ig~~d~~~~~~stf~~-em~~~a~al~la~~~sLlLLDEp~~Gtd~~d------g~~~ 889 (1022)
T 2o8b_B 825 EVC---RLTPIDRVFT-R----LGASDRIMSGESTFFV-ELSETASILMHATAHSLVLVDELGRGTATFD------GTAI 889 (1022)
T ss_dssp SEE---EECCCSBEEE-E----CC---------CHHHH-HHHHHHHHHHHCCTTCEEEEECTTTTSCHHH------HHHH
T ss_pred CcC---CCCHHHHHHH-H----cCCHHHHhhchhhhHH-HHHHHHHHHHhCCCCcEEEEECCCCCCChHH------HHHH
Confidence 642 1222222110 0 00000 0000011112 2223556667778899999999999999631 1244
Q ss_pred HHHHHHHHHHc-CCCceehHhHHHHHh
Q 038045 192 VKRVLRDIQRV-GQEPEEIIQQISETS 217 (621)
Q Consensus 192 irRI~Rdl~er-G~Ti~~VtHd~eea~ 217 (621)
.+.+.+.+.+. |.+++.++|+.+.+.
T Consensus 890 ~~~il~~L~~~~g~~vl~~TH~~el~~ 916 (1022)
T 2o8b_B 890 ANAVVKELAETIKCRTLFSTHYHSLVE 916 (1022)
T ss_dssp HHHHHHHHHHTSCCEEEEECCCHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEeCCHHHHH
Confidence 56677776665 999999999988775
No 106
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.69 E-value=3.3e-10 Score=109.72 Aligned_cols=47 Identities=23% Similarity=0.372 Sum_probs=38.3
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccc-----ccccccccCCCC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNYND-----SSRVVDGNFDDP 114 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~~~-----~~R~Ig~vfQdp 114 (621)
+++|+||||||||||+++|+|++++.| |.+||+.. ..+.+++++|+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~~~G-i~~~g~~~~~~~~~~~~ig~~~~~~ 54 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLKSSG-VPVDGFYTEEVRQGGRRIGFDVVTL 54 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTT-CCCEEEECCEEETTSSEEEEEEEET
T ss_pred EEEEECCCCChHHHHHHHHHhhcccCC-EEEcCEecchhHhhhceEEEEEEec
Confidence 799999999999999999999886567 88888643 234678888764
No 107
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.69 E-value=1.8e-09 Score=127.07 Aligned_cols=126 Identities=11% Similarity=0.043 Sum_probs=76.3
Q ss_pred EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHH--------hhC-CCeeEEEECCcccccccccccCCCCccccc
Q 038045 49 FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKIL--------NFM-PSIAVISMDNYNDSSRVVDGNFDDPRLTDY 119 (621)
Q Consensus 49 ~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~La--------gLl-P~sGvI~lDg~~~~~R~Ig~vfQdp~l~d~ 119 (621)
..++++++|.+.+|+ +++|+|||||||||++|+|+ |.+ |..+.. ++.+ + .++..
T Consensus 649 ~~v~ndisl~~~~g~---i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-----------~~~~-d--~i~~~ 711 (934)
T 3thx_A 649 AFIPNDVYFEKDKQM---FHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-----------VSIV-D--CILAR 711 (934)
T ss_dssp CCCCEEEEEETTTBC---EEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE-----------EECC-S--EEEEE
T ss_pred eeecccceeecCCCe---EEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc-----------chHH-H--HHHHh
Confidence 346789999999999 99999999999999999993 333 321110 1110 0 11111
Q ss_pred chHHHHHHHHhcCCCccCccccccccCccCCceeecCCccEE--EEecceeccccccCCCCeeEEecCCchHHHHHHHHH
Q 038045 120 DTLLENVRDLREGKPVQVPIYDFESSSRTGYRTVEVPSSRIV--IIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLR 197 (621)
Q Consensus 120 ~tV~enL~~L~~gk~V~~p~yd~~~~~rsggq~qrVa~ArVL--IvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~R 197 (621)
..+.+++. ...+.+.......++++ +.++.++++|||+.++|+. ....+.+.+.+
T Consensus 712 ig~~d~l~-----------------~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~------~~~~i~~~il~ 768 (934)
T 3thx_A 712 VGAGDSQL-----------------KGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTY------DGFGLAWAISE 768 (934)
T ss_dssp CC--------------------------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHH------HHHHHHHHHHH
T ss_pred cCchhhHH-----------------HhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHH------HHHHHHHHHHH
Confidence 11111111 11222222222333444 6788999999999999973 12244466777
Q ss_pred HHHH-cCCCceehHhHHH
Q 038045 198 DIQR-VGQEPEEIIQQIS 214 (621)
Q Consensus 198 dl~e-rG~Ti~~VtHd~e 214 (621)
.+.+ .|.+++.++|+.+
T Consensus 769 ~l~~~~g~~vl~aTH~~e 786 (934)
T 3thx_A 769 YIATKIGAFCMFATHFHE 786 (934)
T ss_dssp HHHHTTCCEEEEEESCGG
T ss_pred HHHhcCCCEEEEEcCcHH
Confidence 6665 5999999999954
No 108
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.68 E-value=4.2e-09 Score=111.26 Aligned_cols=76 Identities=16% Similarity=0.204 Sum_probs=58.6
Q ss_pred EeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-----ccccccccC-CCCcc--cccchH
Q 038045 52 IRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-----SSRVVDGNF-DDPRL--TDYDTL 122 (621)
Q Consensus 52 Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-----~~R~Ig~vf-Qdp~l--~d~~tV 122 (621)
+++++|.+++|+ +++|+||||||||||+++|++++ |..|.|.++|... .++.+++++ |++.. +...++
T Consensus 165 ~~~l~~~i~~G~---~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~ 241 (361)
T 2gza_A 165 MSFLRRAVQLER---VIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTA 241 (361)
T ss_dssp HHHHHHHHHTTC---CEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCH
T ss_pred HHHHHHHHhcCC---EEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCH
Confidence 389999999999 99999999999999999999999 7899999997532 234578888 76653 467789
Q ss_pred HHHHHHHh
Q 038045 123 LENVRDLR 130 (621)
Q Consensus 123 ~enL~~L~ 130 (621)
.++|....
T Consensus 242 ~~~i~~~l 249 (361)
T 2gza_A 242 ATLLRSCL 249 (361)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99988743
No 109
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.67 E-value=7.5e-09 Score=114.25 Aligned_cols=76 Identities=9% Similarity=0.088 Sum_probs=64.0
Q ss_pred EeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-------------ccccccccCCCCccc
Q 038045 52 IRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-------------SSRVVDGNFDDPRLT 117 (621)
Q Consensus 52 Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-------------~~R~Ig~vfQdp~l~ 117 (621)
.++++|.+.+|+ +++|+|+||||||||+++|++++ +..|.|.+++... .++.+++++|++.++
T Consensus 283 ~~~Isl~i~~Ge---VI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPF---VILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTE---EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCe---EEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 367888899999 99999999999999999999999 7788888864321 124589999999888
Q ss_pred ccchHHHHHHHHh
Q 038045 118 DYDTLLENVRDLR 130 (621)
Q Consensus 118 d~~tV~enL~~L~ 130 (621)
+..++.+++.+.+
T Consensus 360 p~~tV~e~l~~a~ 372 (503)
T 2yhs_A 360 SASVIFDAIQAAK 372 (503)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8999999998864
No 110
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.64 E-value=9.3e-10 Score=121.36 Aligned_cols=141 Identities=13% Similarity=0.009 Sum_probs=89.8
Q ss_pred ceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCee-EEEECCcccccccccccCCCCcccccchHHHHHHHHhcCC
Q 038045 56 QLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIA-VISMDNYNDSSRVVDGNFDDPRLTDYDTLLENVRDLREGK 133 (621)
Q Consensus 56 sL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sG-vI~lDg~~~~~R~Ig~vfQdp~l~d~~tV~enL~~L~~gk 133 (621)
+..+.+|+ +++|.|+||||||||++++++.. +..+ .+.+........ +. .....+.. .+.+ +. ..+.
T Consensus 275 ~g~i~~G~---i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~-l~---~~~~~~g~-~~~~-~~--~~g~ 343 (525)
T 1tf7_A 275 GGGFFKDS---IILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQ-LL---RNAYSWGM-DFEE-ME--RQNL 343 (525)
T ss_dssp TSSEESSC---EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHH-HH---HHHHTTSC-CHHH-HH--HTTS
T ss_pred CCCCCCCc---EEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHH-HH---HHHHHcCC-CHHH-HH--hCCC
Confidence 45799999 99999999999999999999988 5321 233332211100 00 00000000 1111 11 1110
Q ss_pred CccCccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHH
Q 038045 134 PVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQI 213 (621)
Q Consensus 134 ~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~ 213 (621)
....+..+..+++|+.+++..++++..+|.+++.| |++.||... . .......+.++.+.+++.|.|++.++|+.
T Consensus 344 ---~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~-~-~~~~~~~i~~ll~~l~~~g~tvilvsh~~ 417 (525)
T 1tf7_A 344 ---LKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGV-S-NNAFRQFVIGVTGYAKQEEITGLFTNTSD 417 (525)
T ss_dssp ---EEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSS-C-HHHHHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred ---EEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhC-C-hHHHHHHHHHHHHHHHhCCCEEEEEECcc
Confidence 11233445678899999999999999999999999 999999741 1 11123455667777788899999999985
No 111
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.61 E-value=1.9e-09 Score=126.63 Aligned_cols=136 Identities=12% Similarity=0.028 Sum_probs=80.4
Q ss_pred cEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC--CCeeEEEECCccccc-ccccccCCCCcccccchHHH
Q 038045 48 FFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM--PSIAVISMDNYNDSS-RVVDGNFDDPRLTDYDTLLE 124 (621)
Q Consensus 48 ~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl--P~sGvI~lDg~~~~~-R~Ig~vfQdp~l~d~~tV~e 124 (621)
...++++++|.+++|+ +++|+||||||||||+|+|+++. +..|. +.+.. ..++.+ ..++....+.+
T Consensus 659 ~~~V~ndvsl~~~~g~---i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~-----~vpa~~~~i~~~---d~i~~~ig~~d 727 (918)
T 3thx_B 659 DQYVPNNTDLSEDSER---VMIITGPNMGGKSSYIKQVALITIMAQIGS-----YVPAEEATIGIV---DGIFTRMGAAD 727 (918)
T ss_dssp SSSCCEEEEECTTSCC---EEEEESCCCHHHHHHHHHHHHHHHHHHHTC-----CBSSSEEEEECC---SEEEEEC----
T ss_pred CceecccccccCCCCe---EEEEECCCCCchHHHHHHHHHHHHHhhcCc-----cccchhhhhhHH---HHHHHhCChHH
Confidence 3457889999999999 99999999999999999998753 11110 11110 111111 11333333444
Q ss_pred HHHHHhcCCCccCccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHH-cC
Q 038045 125 NVRDLREGKPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQR-VG 203 (621)
Q Consensus 125 nL~~L~~gk~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~e-rG 203 (621)
++... ....++++.+.+...+. +.++.++|+|||+.++|+. ....+.+.+.+.+.+ .|
T Consensus 728 ~l~~~--------------~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~------~~~~i~~~il~~L~~~~g 786 (918)
T 3thx_B 728 NIYKG--------------RSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTH------DGIAIAYATLEYFIRDVK 786 (918)
T ss_dssp --------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHH------HHHHHHHHHHHHHHHTTC
T ss_pred HHHHh--------------HHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHH------HHHHHHHHHHHHHHHhcC
Confidence 33221 11223333333333333 5678999999999999973 223455566666644 69
Q ss_pred CCceehHhHHHH
Q 038045 204 QEPEEIIQQISE 215 (621)
Q Consensus 204 ~Ti~~VtHd~ee 215 (621)
.+++.++|+.+.
T Consensus 787 ~tvl~vTH~~el 798 (918)
T 3thx_B 787 SLTLFVTHYPPV 798 (918)
T ss_dssp CEEEEECSCGGG
T ss_pred CeEEEEeCcHHH
Confidence 999999999643
No 112
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.58 E-value=1.3e-09 Score=109.00 Aligned_cols=146 Identities=16% Similarity=0.162 Sum_probs=74.7
Q ss_pred eCCCcceEEEEECCCCCcHHHHHHHHH---hhC-CCeeEEE--------ECCccc--------ccccccccCCCCcc---
Q 038045 60 QKNDGIILIGLAGPSGAGKTIFTEKIL---NFM-PSIAVIS--------MDNYND--------SSRVVDGNFDDPRL--- 116 (621)
Q Consensus 60 ~~Ge~~iIVGI~GpSGSGKSTLlr~La---gLl-P~sGvI~--------lDg~~~--------~~R~Ig~vfQdp~l--- 116 (621)
.+|. +|+|+|||||||||++++|+ |+. ++.|.|. .+|... ..+.++++||.+..
T Consensus 25 ~~g~---~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (252)
T 4e22_A 25 AIAP---VITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQ 101 (252)
T ss_dssp TTSC---EEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEE
T ss_pred CCCc---EEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCce
Confidence 5667 99999999999999999999 655 6777776 555421 11345666654321
Q ss_pred --cccchHHHHHHHHhcCC----CccCccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchHH
Q 038045 117 --TDYDTLLENVRDLREGK----PVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFD 190 (621)
Q Consensus 117 --~d~~tV~enL~~L~~gk----~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~ 190 (621)
++..++.+++....-.. ....|..... .......++....++++|..+- .-+++..|.++|++++.+.+
T Consensus 102 ~~l~~~~v~~~i~~~~v~~~~s~~~~~~~vr~~----l~~~~~~~a~~~~~V~~gr~~~-~~v~~~~~~~ifl~A~~e~r 176 (252)
T 4e22_A 102 VILEGEDVSNEIRTETVGNTASQAAAFPRVREA----LLRRQRAFREAPGLIADGRDMG-TIVFPDAPVKIFLDASSQER 176 (252)
T ss_dssp EEETTEECTTGGGSHHHHHHHHHHTTSHHHHHH----HHHHHHTTCCSSCEEEEESSCC-CCCSTTCSEEEEEECCHHHH
T ss_pred EEECCeehhHHHHHHHHHHHHHHhcccHHHHHH----HHHHHHHHhhCCCEEEEeceec-eeecCCCCEEEEEECCHHHH
Confidence 11112222211000000 0000000000 0000112333445777774321 12344578999999999987
Q ss_pred HHHHHHHHHHHc-CCCceehHhHH
Q 038045 191 LVKRVLRDIQRV-GQEPEEIIQQI 213 (621)
Q Consensus 191 LirRI~Rdl~er-G~Ti~~VtHd~ 213 (621)
..|++.+...+. +.+...+..++
T Consensus 177 ~~R~~~~l~~~~~~~~~~~~~~~i 200 (252)
T 4e22_A 177 AHRRMLQLQERGFNVNFERLLAEI 200 (252)
T ss_dssp HHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHH
Confidence 777665543322 33444444443
No 113
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.55 E-value=6.1e-09 Score=109.21 Aligned_cols=68 Identities=15% Similarity=0.149 Sum_probs=55.3
Q ss_pred eCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccc-----------ccc--ccccCCCCcccccchHHHH
Q 038045 60 QKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDS-----------SRV--VDGNFDDPRLTDYDTLLEN 125 (621)
Q Consensus 60 ~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~-----------~R~--Ig~vfQdp~l~d~~tV~en 125 (621)
++|+ +++|+|||||||||++++|++++ |..|.|.+++.... .+. +.+++|.+.+++..++.++
T Consensus 127 ~~g~---vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 127 EKPY---VIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp CSSE---EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CCCe---EEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 4566 99999999999999999999999 88888888765321 122 3478899999999999999
Q ss_pred HHHHh
Q 038045 126 VRDLR 130 (621)
Q Consensus 126 L~~L~ 130 (621)
+....
T Consensus 204 l~~~~ 208 (328)
T 3e70_C 204 IQHAK 208 (328)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98754
No 114
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.54 E-value=5.3e-09 Score=110.79 Aligned_cols=121 Identities=13% Similarity=0.085 Sum_probs=71.8
Q ss_pred EEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CC-eeEEEE-CCccc--ccccccccCCCCcccccchHHHHHHHHhcC
Q 038045 58 LAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PS-IAVISM-DNYND--SSRVVDGNFDDPRLTDYDTLLENVRDLREG 132 (621)
Q Consensus 58 ~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~-sGvI~l-Dg~~~--~~R~Ig~vfQdp~l~d~~tV~enL~~L~~g 132 (621)
...+++ +++|+||||||||||+++|++++ |. .|.|.. .+-.. .....+++.|.....+..++.
T Consensus 119 ~~~~~g---~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~--------- 186 (356)
T 3jvv_A 119 SDVPRG---LVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFS--------- 186 (356)
T ss_dssp HHCSSE---EEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHH---------
T ss_pred HhCCCC---EEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHH---------
Confidence 556777 99999999999999999999998 53 455533 22110 011111222211111111111
Q ss_pred CCccCccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhH
Q 038045 133 KPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQ 212 (621)
Q Consensus 133 k~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd 212 (621)
-..++++..+|.+++.|||+ |. +....+.+ ..+.|.++..++|+
T Consensus 187 ----------------------~~La~aL~~~PdvillDEp~---d~----------e~~~~~~~-~~~~G~~vl~t~H~ 230 (356)
T 3jvv_A 187 ----------------------EALRSALREDPDIILVGEMR---DL----------ETIRLALT-AAETGHLVFGTLHT 230 (356)
T ss_dssp ----------------------HHHHHHTTSCCSEEEESCCC---SH----------HHHHHHHH-HHHTTCEEEEEESC
T ss_pred ----------------------HHHHHHhhhCcCEEecCCCC---CH----------HHHHHHHH-HHhcCCEEEEEEcc
Confidence 14567777889999999998 32 22333333 34669999999999
Q ss_pred HHHHhccccccchhhhcCC
Q 038045 213 ISETSAKNLSVDQIKAVYP 231 (621)
Q Consensus 213 ~eea~~R~v~~~d~iavl~ 231 (621)
..... .++++..|.
T Consensus 231 ~~~~~-----~~dRli~l~ 244 (356)
T 3jvv_A 231 TSAAK-----TIDRVVDVF 244 (356)
T ss_dssp SSHHH-----HHHHHHHTS
T ss_pred ChHHH-----HHHHHhhhc
Confidence 76542 345555554
No 115
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.54 E-value=2.1e-09 Score=116.27 Aligned_cols=154 Identities=14% Similarity=0.018 Sum_probs=78.9
Q ss_pred eecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCee--EEEECCccc-ccccccccCCC
Q 038045 38 IQDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIA--VISMDNYND-SSRVVDGNFDD 113 (621)
Q Consensus 38 v~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sG--vI~lDg~~~-~~R~Ig~vfQd 113 (621)
-..++++.++...++++++|.+ +|+|+||||||||+++|+|.. +..| .+.++.... ..+.+++++|+
T Consensus 13 ~~~~l~~~y~~~~vl~~vsf~I---------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~ 83 (418)
T 2qag_C 13 GFANLPNQVYRKSVKRGFEFTL---------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKE 83 (418)
T ss_dssp --CCCCCCTTTTTCC-CCCEEE---------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC---
T ss_pred EEEecceeECCEEEecCCCEEE---------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEec
Confidence 4566777778788899999876 999999999999999999987 4333 111111111 12346788887
Q ss_pred CcccccchHHHHHHHHhcCC--CccCccccccccCccCCceeecCCccEEEEecc---eecccccc-CCCCeeEEecCCc
Q 038045 114 PRLTDYDTLLENVRDLREGK--PVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGI---YALSEKLR-PLLDLRVSVTGGV 187 (621)
Q Consensus 114 p~l~d~~tV~enL~~L~~gk--~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~---lLLlDEp~-s~LDlkV~Vd~~~ 187 (621)
+..+..+++++++.+..... ....+..++.......+..+++.++++++.++. +++.|||+ ..+|. .
T Consensus 84 ~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~-------~ 156 (418)
T 2qag_C 84 GGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKP-------L 156 (418)
T ss_dssp ---CEEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCH-------H
T ss_pred CCcccceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCH-------H
Confidence 77766666666654422100 000000000000111223346677888888887 77789998 57885 2
Q ss_pred hHHHHHHHHHHHHHcCCCceehHhH
Q 038045 188 HFDLVKRVLRDIQRVGQEPEEIIQQ 212 (621)
Q Consensus 188 d~~LirRI~Rdl~erG~Ti~~VtHd 212 (621)
+..++++ +. .+.+++.|.+.
T Consensus 157 d~~~lk~----L~-~~v~iIlVinK 176 (418)
T 2qag_C 157 DIEFMKR----LH-EKVNIIPLIAK 176 (418)
T ss_dssp HHHHHHH----HT-TTSEEEEEEES
T ss_pred HHHHHHH----Hh-ccCcEEEEEEc
Confidence 2233333 32 25666666554
No 116
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.53 E-value=3.8e-09 Score=110.68 Aligned_cols=78 Identities=10% Similarity=0.051 Sum_probs=62.6
Q ss_pred ecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccc-----------cccc
Q 038045 39 QDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYND-----------SSRV 106 (621)
Q Consensus 39 ~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~-----------~~R~ 106 (621)
.+++++.++...+++++++.+.+|+ +++|+|+||||||||+++|++++ |..|.|.+.+... .++.
T Consensus 32 ~~~~~~~~~~~~~l~~i~~~~~~g~---~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~ 108 (337)
T 2qm8_A 32 SRRADHRAAVRDLIDAVLPQTGRAI---RVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTR 108 (337)
T ss_dssp CSSHHHHHHHHHHHHHHGGGCCCSE---EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGG
T ss_pred eCCcccccChHHHHHhCCcccCCCe---EEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhh
Confidence 3455556666678999999999999 99999999999999999999998 7778887776422 2345
Q ss_pred ccccCCCCccccc
Q 038045 107 VDGNFDDPRLTDY 119 (621)
Q Consensus 107 Ig~vfQdp~l~d~ 119 (621)
+++++|++.+|..
T Consensus 109 i~~v~q~~~~~~~ 121 (337)
T 2qm8_A 109 MARLAIDRNAFIR 121 (337)
T ss_dssp STTGGGCTTEEEE
T ss_pred heeeccCcccccc
Confidence 7899999887754
No 117
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.52 E-value=1.3e-08 Score=118.18 Aligned_cols=135 Identities=10% Similarity=0.028 Sum_probs=80.7
Q ss_pred CcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC--CCeeEEEECCccc-ccccccccCCCCcccccchHH
Q 038045 47 GFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM--PSIAVISMDNYND-SSRVVDGNFDDPRLTDYDTLL 123 (621)
Q Consensus 47 G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl--P~sGvI~lDg~~~-~~R~Ig~vfQdp~l~d~~tV~ 123 (621)
+...++++++|. ++|+ +++|+||||||||||+|+|+++. ...| .+.+ ....++++++ +|...++.
T Consensus 593 ~~~~vlndisl~-~~g~---i~~ItGpNGsGKSTlLr~iagl~~~~q~G-----~~vpa~~~~i~~~~~---i~~~~~~~ 660 (800)
T 1wb9_A 593 NEPFIANPLNLS-PQRR---MLIITGPNMGGKSTYMRQTALIALMAYIG-----SYVPAQKVEIGPIDR---IFTRVGAA 660 (800)
T ss_dssp SSCCCCEEEEEC-SSSC---EEEEECCTTSSHHHHHHHHHHHHHHHTTT-----CCBSSSEEEECCCCE---EEEEEC--
T ss_pred CCceeeeccccc-CCCc---EEEEECCCCCChHHHHHHHHHHHHHHhcC-----cccchhcccceeHHH---HHhhCCHH
Confidence 345578999999 8888 99999999999999999999975 2222 1111 1224555544 56666777
Q ss_pred HHHHHHhcCCCccCccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHH-c
Q 038045 124 ENVRDLREGKPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQR-V 202 (621)
Q Consensus 124 enL~~L~~gk~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~e-r 202 (621)
+++...... + +.+.. ++...-..+.++.++++|||..++|..- ...+.+.+.+.+.+ .
T Consensus 661 d~l~~~~st-------f-------~~e~~-~~~~il~~a~~psLlLLDEp~~Gtd~~d------~~~i~~~ll~~l~~~~ 719 (800)
T 1wb9_A 661 DDLASGRST-------F-------MVEMT-ETANILHNATEYSLVLMDEIGRGTSTYD------GLSLAWACAENLANKI 719 (800)
T ss_dssp ----------------C-------HHHHH-HHHHHHHHCCTTEEEEEESCCCCSSSSH------HHHHHHHHHHHHHHTT
T ss_pred HHHHhhhhh-------h-------hHHHH-HHHHHHHhccCCCEEEEECCCCCCChhH------HHHHHHHHHHHHHhcc
Confidence 776542110 0 11111 1111111255788999999988888631 12234566666666 5
Q ss_pred CCCceehHhHHH
Q 038045 203 GQEPEEIIQQIS 214 (621)
Q Consensus 203 G~Ti~~VtHd~e 214 (621)
|.+++.++|+.+
T Consensus 720 g~~vl~~TH~~e 731 (800)
T 1wb9_A 720 KALTLFATHYFE 731 (800)
T ss_dssp CCEEEEECSCGG
T ss_pred CCeEEEEeCCHH
Confidence 999999999964
No 118
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.51 E-value=6.5e-08 Score=90.84 Aligned_cols=64 Identities=16% Similarity=0.293 Sum_probs=48.6
Q ss_pred EeCCCcceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccc-----ccccccccCCCCcccccchHHHHHHH
Q 038045 59 AQKNDGIILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNYND-----SSRVVDGNFDDPRLTDYDTLLENVRD 128 (621)
Q Consensus 59 I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~~~-----~~R~Ig~vfQdp~l~d~~tV~enL~~ 128 (621)
+++|+ +++|+||||||||||+++|++. ++.|.|.+|+... ....+++++|++. ...++.+++..
T Consensus 6 i~~g~---~i~l~G~~GsGKSTl~~~La~~-~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~ 74 (191)
T 1zp6_A 6 DLGGN---ILLLSGHPGSGKSTIAEALANL-PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAAD 74 (191)
T ss_dssp CCTTE---EEEEEECTTSCHHHHHHHHHTC-SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHH
T ss_pred CCCCe---EEEEECCCCCCHHHHHHHHHhc-cCCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHH
Confidence 56778 9999999999999999999998 5889999987521 1123567777543 45677777765
No 119
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.48 E-value=2.8e-09 Score=108.38 Aligned_cols=142 Identities=18% Similarity=0.128 Sum_probs=86.4
Q ss_pred EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCcccc-------cccccccCCCC-cccccc
Q 038045 49 FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNYNDS-------SRVVDGNFDDP-RLTDYD 120 (621)
Q Consensus 49 ~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~~~~-------~R~Ig~vfQdp-~l~d~~ 120 (621)
..+++++++.+++| ++|.||||||||||+++|++.. ..+.|.+++.... .+.++++||.. ..++..
T Consensus 33 ~~~l~~~~l~~~~G-----vlL~Gp~GtGKTtLakala~~~-~~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i 106 (274)
T 2x8a_A 33 PDQFKALGLVTPAG-----VLLAGPPGCGKTLLAKAVANES-GLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCV 106 (274)
T ss_dssp HHHHHHTTCCCCSE-----EEEESSTTSCHHHHHHHHHHHT-TCEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHcCCCCCCe-----EEEECCCCCcHHHHHHHHHHHc-CCCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCe
Confidence 34567777777654 8999999999999999999998 3478888875321 23466677654 233444
Q ss_pred hHHHHHHHHhcCCC-----ccCccccccccCccCCceeecCCccEEEEecceeccccccC---CCCeeEEecCCchHHHH
Q 038045 121 TLLENVRDLREGKP-----VQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRP---LLDLRVSVTGGVHFDLV 192 (621)
Q Consensus 121 tV~enL~~L~~gk~-----V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s---~LDlkV~Vd~~~d~~Li 192 (621)
++.+++..+..... ......+......++++.+++..+.++..++.++ |++.- .||..+++..|... ..
T Consensus 107 ~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~-~r 183 (274)
T 2x8a_A 107 IFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPA-DR 183 (274)
T ss_dssp EEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHH-HH
T ss_pred EeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHH-HH
Confidence 44444443221100 0011112223456677777776667777777543 66442 79999999887654 34
Q ss_pred HHHHHHH
Q 038045 193 KRVLRDI 199 (621)
Q Consensus 193 rRI~Rdl 199 (621)
..+.+.+
T Consensus 184 ~~il~~~ 190 (274)
T 2x8a_A 184 LAILKTI 190 (274)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
No 120
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.47 E-value=2.9e-09 Score=112.13 Aligned_cols=148 Identities=11% Similarity=0.007 Sum_probs=85.2
Q ss_pred Eeec-ceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC--C-Ce----eE-EEECCcccc-cccccccCCCCcccccch
Q 038045 52 IRAC-QLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM--P-SI----AV-ISMDNYNDS-SRVVDGNFDDPRLTDYDT 121 (621)
Q Consensus 52 Lk~I-sL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl--P-~s----Gv-I~lDg~~~~-~R~Ig~vfQdp~l~d~~t 121 (621)
|+.+ .+.+++|+ +++|.||||||||||++.|++.. + .. |. |++|+.... .+.+++++|.+.+++. +
T Consensus 120 LD~lL~ggi~~G~---i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~-~ 195 (349)
T 1pzn_A 120 LDKLLGGGIETQA---ITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPD-E 195 (349)
T ss_dssp HHHHHTSSEESSE---EEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHH-H
T ss_pred HHHHhcCCCCCCe---EEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHH-H
Confidence 4444 56799999 99999999999999999999987 3 22 45 899886432 3457777777665433 5
Q ss_pred HHHHHHHHhcCCCcc----CccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCC--c----hHHH
Q 038045 122 LLENVRDLREGKPVQ----VPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGG--V----HFDL 191 (621)
Q Consensus 122 V~enL~~L~~gk~V~----~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~--~----d~~L 191 (621)
+.+|+........-. +..........++|+ .++.+++.|+|+..+|....-... . -.++
T Consensus 196 v~~ni~~~~~~~~~~~~~~l~~~~~~~~~lS~G~-----------~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~ 264 (349)
T 1pzn_A 196 VLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTD-----------RPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKH 264 (349)
T ss_dssp HGGGEEEEECCSHHHHHHHHHHHHHHHHHSSSSS-----------SCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHH
T ss_pred HhhCEEEEecCChHHHHHHHHHHHHHHHHhcccc-----------CCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHH
Confidence 544443211000000 000000011223322 346677888888888863200000 0 1233
Q ss_pred HHHHHHHHHHcCCCceehHhHHH
Q 038045 192 VKRVLRDIQRVGQEPEEIIQQIS 214 (621)
Q Consensus 192 irRI~Rdl~erG~Ti~~VtHd~e 214 (621)
++.+.+..++.|.+++.+.|...
T Consensus 265 l~~L~~la~~~~~tvii~~h~~~ 287 (349)
T 1pzn_A 265 LADLHRLANLYDIAVFVTNQVQA 287 (349)
T ss_dssp HHHHHHHHHHTTCEEEEEEECC-
T ss_pred HHHHHHHHHHcCcEEEEEccccc
Confidence 44455555567899998888644
No 121
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.43 E-value=1.3e-09 Score=104.30 Aligned_cols=43 Identities=21% Similarity=0.146 Sum_probs=33.6
Q ss_pred EEeecce-EEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEE
Q 038045 51 VIRACQL-LAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVIS 96 (621)
Q Consensus 51 ~Lk~IsL-~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~ 96 (621)
.|+++.. .+++|+ +++|+||||||||||++.|++.. +..+.+.
T Consensus 11 ~Ld~~~~ggi~~G~---~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~ 55 (235)
T 2w0m_A 11 DFDKLIQGGIPQGF---FIALTGEPGTGKTIFSLHFIAKGLRDGDPCI 55 (235)
T ss_dssp HHHGGGTTSEETTC---EEEEECSTTSSHHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHhcCCCcCCC---EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 3455554 588999 99999999999999999999876 4333333
No 122
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.42 E-value=4.8e-08 Score=107.56 Aligned_cols=49 Identities=18% Similarity=0.282 Sum_probs=45.2
Q ss_pred EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcc
Q 038045 49 FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYN 101 (621)
Q Consensus 49 ~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~ 101 (621)
..+|++++|++++ + ++||+||||||||||+++|+|++ |+.|.|.++|..
T Consensus 17 ~~~l~~vsl~i~~-e---~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~ 66 (483)
T 3euj_A 17 WNGFFARTFDFDE-L---VTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTT 66 (483)
T ss_dssp ETTEEEEEEECCS-S---EEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTT
T ss_pred cccccceEEEEcc-c---eEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEE
Confidence 3468999999999 9 99999999999999999999999 899999999863
No 123
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.42 E-value=5.4e-10 Score=117.51 Aligned_cols=43 Identities=12% Similarity=0.191 Sum_probs=37.2
Q ss_pred EeecceEEeC--CCcceEEEEECCCCCcHHHHHHHHHhhC-CCe----eEEEE
Q 038045 52 IRACQLLAQK--NDGIILIGLAGPSGAGKTIFTEKILNFM-PSI----AVISM 97 (621)
Q Consensus 52 Lk~IsL~I~~--Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~s----GvI~l 97 (621)
.+.|++.+.+ ++ .++|+||||||||||+++|+|++ |.. |.|.+
T Consensus 158 ~~~v~~~v~~~lg~---k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i 207 (365)
T 1lw7_A 158 WKFIPKEARPFFAK---TVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFV 207 (365)
T ss_dssp GGGSCTTTGGGTCE---EEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHH
T ss_pred hhhCCHHHHHhhhC---eEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHH
Confidence 3568888999 99 89999999999999999999999 766 66654
No 124
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.39 E-value=1.5e-08 Score=109.91 Aligned_cols=80 Identities=10% Similarity=0.010 Sum_probs=49.9
Q ss_pred eeeeCcEEEEeecceEEeCCCcceE--EEEECCCCCcHHHHHHHHHhhCCCeeEEEECCcccccccccccCCCCcccccc
Q 038045 43 SFEKGFFVVIRACQLLAQKNDGIIL--IGLAGPSGAGKTIFTEKILNFMPSIAVISMDNYNDSSRVVDGNFDDPRLTDYD 120 (621)
Q Consensus 43 sf~~G~~~~Lk~IsL~I~~Ge~~iI--VGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~~~~~R~Ig~vfQdp~l~d~~ 120 (621)
++.+|... +++++|.+++|+ + +||+||||||||||+++|+|+.-....+.-.......+.+++++|++.+++.+
T Consensus 22 ~~~y~~~~-L~~vsl~i~~Ge---i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~l 97 (427)
T 2qag_B 22 HVGFDSLP-DQLVNKSVSQGF---CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKL 97 (427)
T ss_dssp CC-CC--C-HHHHHHSCC-CC---EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEE
T ss_pred EEEECCee-cCCCceEecCCC---eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCcccccc
Confidence 44455556 999999999999 8 99999999999999999999851100111000011223578888887766666
Q ss_pred hHHHHH
Q 038045 121 TLLENV 126 (621)
Q Consensus 121 tV~enL 126 (621)
++.+++
T Consensus 98 tv~D~~ 103 (427)
T 2qag_B 98 TIVSTV 103 (427)
T ss_dssp EEEEEE
T ss_pred chhhhh
Confidence 655554
No 125
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.38 E-value=1.7e-08 Score=99.76 Aligned_cols=62 Identities=16% Similarity=0.214 Sum_probs=45.8
Q ss_pred EEEEECCCCCcHHHHHHHHH---hhC-CCeeEEEECCcccc---cccccccCCCCcccccchHHHHHHH
Q 038045 67 LIGLAGPSGAGKTIFTEKIL---NFM-PSIAVISMDNYNDS---SRVVDGNFDDPRLTDYDTLLENVRD 128 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~La---gLl-P~sGvI~lDg~~~~---~R~Ig~vfQdp~l~d~~tV~enL~~ 128 (621)
+++|+||||||||||+++|+ |+. ++.|.|..++.... ...+..++|++.+++..++.+++..
T Consensus 29 ~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~ 97 (246)
T 2bbw_A 29 RAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMS 97 (246)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999999999 877 66676666543211 1224445677777788888888865
No 126
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.35 E-value=3.9e-08 Score=96.11 Aligned_cols=38 Identities=26% Similarity=0.356 Sum_probs=22.7
Q ss_pred EEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHH-hhCC
Q 038045 50 VVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKIL-NFMP 90 (621)
Q Consensus 50 ~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~La-gLlP 90 (621)
+..+++||++++|+ ++||+||||||||||+++|+ +++|
T Consensus 15 ~~~~~~sl~v~~G~---ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 15 QTQGPGSMLKSVGV---ILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -------CCEECCC---EEEEECSCC----CHHHHHHC----
T ss_pred cccCCCCcccCCCC---EEEEECCCCCCHHHHHHHHHhcCCC
Confidence 45788999999999 99999999999999999999 9884
No 127
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.35 E-value=1.6e-07 Score=90.47 Aligned_cols=45 Identities=16% Similarity=0.173 Sum_probs=30.2
Q ss_pred ccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCC
Q 038045 158 SRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQ 204 (621)
Q Consensus 158 ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~ 204 (621)
...++++|.. +........|..++++++.+....|+..+ +.++|.
T Consensus 123 ~~~~vldg~~-~~~~~~~~~d~~i~l~~~~e~~~~R~~~~-l~~rg~ 167 (227)
T 1cke_A 123 LPGLIADGRD-MGTVVFPDAPVKIFLDASSEERAHRRMLQ-LQVKGF 167 (227)
T ss_dssp TTCEEEEESS-CCCCCCTTCSEEEEEECCHHHHHHHHHHH-HHHHTC
T ss_pred CCCEEEECCC-ccceEecCCCEEEEEeCCHHHHHHHHHHH-HHhCCc
Confidence 4578888863 33345567899999999988766554433 335565
No 128
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.34 E-value=5.8e-08 Score=99.86 Aligned_cols=56 Identities=20% Similarity=0.197 Sum_probs=38.0
Q ss_pred EeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEE---CCcccc-------cccccccCCCCccc
Q 038045 59 AQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISM---DNYNDS-------SRVVDGNFDDPRLT 117 (621)
Q Consensus 59 I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~l---Dg~~~~-------~R~Ig~vfQdp~l~ 117 (621)
+..|+ +++|+||||||||||+++|+|+. |..|.|.+ +|.+.. .+.++++||.|...
T Consensus 166 ~l~ge---iv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~ 232 (301)
T 1u0l_A 166 YLKGK---ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFA 232 (301)
T ss_dssp HHSSS---EEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSST
T ss_pred HhcCC---eEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCC
Confidence 45677 99999999999999999999999 89999998 665321 13578999998753
No 129
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.33 E-value=3.8e-08 Score=93.97 Aligned_cols=94 Identities=11% Similarity=0.032 Sum_probs=60.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC-CC---eeEEEECCcc--c--------cc-cccc----ccCCCCcccccc-------
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFM-PS---IAVISMDNYN--D--------SS-RVVD----GNFDDPRLTDYD------- 120 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLl-P~---sGvI~lDg~~--~--------~~-R~Ig----~vfQdp~l~d~~------- 120 (621)
+++|+|+||||||||++.|++++ |. .|.|.+|+.. . .+ +.++ ++.|++.+|-..
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i~~~~~~~~a 83 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFIRRVSEEEGN 83 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEEEECCHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEEecCChhhhh
Confidence 89999999999999999999999 66 8999999763 1 11 2466 667776655211
Q ss_pred hHHHHHHHHhcCCCccCccccccc-cCccCCceeecCCccEEEEecce
Q 038045 121 TLLENVRDLREGKPVQVPIYDFES-SSRTGYRTVEVPSSRIVIIEGIY 167 (621)
Q Consensus 121 tV~enL~~L~~gk~V~~p~yd~~~-~~rsggq~qrVa~ArVLIvEG~l 167 (621)
.+.+.+... .|.||... ...++|+.|+++.+|+++-+|.+
T Consensus 84 ~l~~~i~~~-------l~g~dt~i~EglSgGq~qri~lARall~~p~i 124 (171)
T 2f1r_A 84 DLDWIYERY-------LSDYDLVITEGFSKAGKDRIVVVKKPEEVEHF 124 (171)
T ss_dssp CHHHHHHHH-------TTTCSEEEEESCGGGCCCEEEECSSGGGGGGG
T ss_pred CHHHHHHhh-------CCCCCEEEECCcCCCCCcEEEEEecccCCCcc
Confidence 222333220 11233222 23789999999999988777754
No 130
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=98.29 E-value=1.2e-07 Score=96.62 Aligned_cols=143 Identities=14% Similarity=0.210 Sum_probs=74.6
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccc----c-c-------ccccccCCCC-cccccchHHHHH---
Q 038045 63 DGIILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNYND----S-S-------RVVDGNFDDP-RLTDYDTLLENV--- 126 (621)
Q Consensus 63 e~~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~~~----~-~-------R~Ig~vfQdp-~l~d~~tV~enL--- 126 (621)
.++++|+|+|++||||||+++.|+. + +...|..|.+.. . . ...|..+.++ ..++...+...+
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~-l-g~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~~ 150 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN-L-GAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGN 150 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH-H-TCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTTC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH-C-CCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhCC
Confidence 4578999999999999999999995 3 455677776511 0 0 0112111111 122222221111
Q ss_pred -HHHhcCCCccCccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCC
Q 038045 127 -RDLREGKPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQE 205 (621)
Q Consensus 127 -~~L~~gk~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~T 205 (621)
..+.....+..|.+......... ........++|+||.+++.......+|..||++++.+.++.|...| .|.+
T Consensus 151 ~~~~~~l~~i~~P~i~~~~~~~~~--~~~~~~~~~vIveg~~l~~~~~~~~~d~vI~l~a~~ev~~~Rl~~R----~g~s 224 (281)
T 2f6r_A 151 KKQMKILTDIVWPVIAKLAREEMD--VAVAKGKTLCVIDAAMLLEAGWQSMVHEVWTVVIPETEAVRRIVER----DGLS 224 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HHHHTTCCEEEEECTTTTTTTGGGGCSEEEEEECCHHHHHHHHHHH----HCCC
T ss_pred HHHHHHhhcccChHHHHHHHHHHH--HHhccCCCEEEEEechhhccchHHhCCEEEEEcCCHHHHHHHHHHc----CCCC
Confidence 00000011112222111111110 0001124689999987665556677899999999988765554444 3666
Q ss_pred ceehHhHH
Q 038045 206 PEEIIQQI 213 (621)
Q Consensus 206 i~~VtHd~ 213 (621)
.+.+...+
T Consensus 225 ~e~~~~ri 232 (281)
T 2f6r_A 225 EAAAQSRL 232 (281)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65544443
No 131
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=98.27 E-value=8.8e-08 Score=101.17 Aligned_cols=139 Identities=12% Similarity=0.121 Sum_probs=75.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccccc-ccccc---cCCCCcccccchHHHHHHHHhcCCCccCcccc
Q 038045 66 ILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNYNDSS-RVVDG---NFDDPRLTDYDTLLENVRDLREGKPVQVPIYD 141 (621)
Q Consensus 66 iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~~~~~-R~Ig~---vfQdp~l~d~~tV~enL~~L~~gk~V~~p~yd 141 (621)
.+|+|+||+|||||||++.|+..+ +...|++|++...+ ..++- .+.+-...++ .+..+..+.. ..+.++
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l-~~~iis~Ds~qvYr~~~i~Takp~~eE~~~v~h-----hl~di~~~~~-~~~~~d 80 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF-NGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPH-----YMIDILPPDA-SFSAYE 80 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT-TEEEEECCSSTTBTTCCTTTTCCCTTTTTTCCE-----ESSSCBCTTS-CCCHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc-CCceeccccccccccccccccCCCHHHHHHHHH-----HHHHHhCCcc-ccCHHH
Confidence 489999999999999999999988 46688999872111 01110 0000000000 0000111111 334444
Q ss_pred ccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEec-CCch--HHHHHHHHHHHHHcCCCceehHhHHHHHh
Q 038045 142 FESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVT-GGVH--FDLVKRVLRDIQRVGQEPEEIIQQISETS 217 (621)
Q Consensus 142 ~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd-~~~d--~~LirRI~Rdl~erG~Ti~~VtHd~eea~ 217 (621)
+....+..-.........+|+++|..+..++++..+| ++++ ++.+ .++.+++.| +.++|.+ +.|++....
T Consensus 81 F~~~a~~~i~~i~~~g~~~IlvGGt~ly~~~l~~~l~--~~~~~~d~~~~~Rlrrrl~r-~~~~G~~---~l~~~L~~v 153 (340)
T 3d3q_A 81 FKKRAEKYIKDITRRGKVPIIAGGTGLYIQSLLYNYA--FEDESISEDKMKQVKLKLKE-LEHLNNN---KLHEYLASF 153 (340)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHBCSC--CC---CCHHHHHHHHHHHHT-TSSSCHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcEEEECChhhhHHHHHhccc--ccCCCCChHHHHHHHHHHHH-HHhcCHH---HHHHHHHhh
Confidence 4332221111111134568888998777788888887 4566 5554 447777777 6666653 555554443
No 132
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.24 E-value=3.7e-07 Score=87.35 Aligned_cols=66 Identities=14% Similarity=0.071 Sum_probs=46.9
Q ss_pred eEEeCCCcceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCcccc------cccccccCCCCcccccchHHHHHHH
Q 038045 57 LLAQKNDGIILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNYNDS------SRVVDGNFDDPRLTDYDTLLENVRD 128 (621)
Q Consensus 57 L~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~~~~------~R~Ig~vfQdp~l~d~~tV~enL~~ 128 (621)
+..++|+ +|+|+|||||||||++++|++.+ |.+.+|+.... ....+++||++..++..++.+++..
T Consensus 24 m~~~~g~---~i~l~G~~GsGKSTl~~~L~~~~---g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 95 (200)
T 4eun_A 24 MTGEPTR---HVVVMGVSGSGKTTIAHGVADET---GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMD 95 (200)
T ss_dssp ----CCC---EEEEECCTTSCHHHHHHHHHHHH---CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred hcCCCCc---EEEEECCCCCCHHHHHHHHHHhh---CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHH
Confidence 3455677 99999999999999999999987 56667654221 1246888988777776666666543
No 133
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.23 E-value=1.3e-07 Score=102.37 Aligned_cols=55 Identities=20% Similarity=0.180 Sum_probs=41.3
Q ss_pred ceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCc
Q 038045 41 PLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNY 100 (621)
Q Consensus 41 ~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~ 100 (621)
++.|.++...+|+++ + ..+|+ +++|+||||||||||+++|.+++ |..|.|.+++.
T Consensus 148 ~Lg~~~~~~~~L~~l-~-~~~gg---ii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed 203 (418)
T 1p9r_A 148 SLGMTAHNHDNFRRL-I-KRPHG---IILVTGPTGSGKSTTLYAGLQELNSSERNILTVED 203 (418)
T ss_dssp GSCCCHHHHHHHHHH-H-TSSSE---EEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEES
T ss_pred HcCCCHHHHHHHHHH-H-HhcCC---eEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecc
Confidence 344444444456665 3 36778 99999999999999999999998 77788877654
No 134
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.23 E-value=3.8e-07 Score=86.30 Aligned_cols=56 Identities=32% Similarity=0.303 Sum_probs=37.5
Q ss_pred EEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCee-EEEECCccc---ccccccccCCCCcc
Q 038045 58 LAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIA-VISMDNYND---SSRVVDGNFDDPRL 116 (621)
Q Consensus 58 ~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sG-vI~lDg~~~---~~R~Ig~vfQdp~l 116 (621)
++.+|+ +++|+|||||||||++++|++.+ |+.| .+....... ....++++|+++..
T Consensus 2 ~i~~g~---~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 62 (207)
T 2j41_A 2 DNEKGL---LIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDA 62 (207)
T ss_dssp --CCCC---EEEEECSTTSCHHHHHHHHHHCTTCCEECCCCEECSCCCTTCCBTTTBEECCHHH
T ss_pred CCCCCC---EEEEECCCCCCHHHHHHHHHHhhCCCeEEecccccCCCCCCccCCCceEEcCHHH
Confidence 467888 99999999999999999999998 7655 222111111 11236677776543
No 135
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.22 E-value=4.7e-07 Score=86.44 Aligned_cols=52 Identities=17% Similarity=0.142 Sum_probs=31.3
Q ss_pred cEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHH
Q 038045 159 RIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQIS 214 (621)
Q Consensus 159 rVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~e 214 (621)
..+|+++.++........+|..++++++.+.+..|...| .|.+.+.+...+.
T Consensus 106 ~~vv~~~~~l~e~~~~~~~d~vi~l~~~~e~~~~Rl~~R----~~~~~e~~~~r~~ 157 (206)
T 1jjv_A 106 PYTLFVVPLLIENKLTALCDRILVVDVSPQTQLARSAQR----DNNNFEQIQRIMN 157 (206)
T ss_dssp SEEEEECTTTTTTTCGGGCSEEEEEECCHHHHHHHHC---------CHHHHHHHHH
T ss_pred CEEEEEechhhhcCcHhhCCEEEEEECCHHHHHHHHHHc----CCCCHHHHHHHHH
Confidence 478888865544445678899999999987755544433 2555554444443
No 136
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.20 E-value=6.9e-07 Score=86.41 Aligned_cols=40 Identities=13% Similarity=0.143 Sum_probs=34.5
Q ss_pred EeCCCcceEEEEECCCCCcHHHHHHHHHhh--C-C-----CeeEEEECCcc
Q 038045 59 AQKNDGIILIGLAGPSGAGKTIFTEKILNF--M-P-----SIAVISMDNYN 101 (621)
Q Consensus 59 I~~Ge~~iIVGI~GpSGSGKSTLlr~LagL--l-P-----~sGvI~lDg~~ 101 (621)
+++|+ +++|+||||||||||++.|++. . | +.+++++++..
T Consensus 21 i~~G~---~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 21 IETGS---ITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp EETTS---EEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CcCCe---EEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 78999 9999999999999999999994 4 3 56888888753
No 137
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=98.17 E-value=2.3e-07 Score=96.65 Aligned_cols=64 Identities=9% Similarity=0.002 Sum_probs=46.9
Q ss_pred cccCccCCcee------ecCCccEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHH
Q 038045 143 ESSSRTGYRTV------EVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQI 213 (621)
Q Consensus 143 ~~~~rsggq~q------rVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~ 213 (621)
....+|+|+++ ++..+++++.+|.++++|||+..||+. ....+..+.+.+...|.+++.++|+.
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~-------~~~~l~~~l~~~~~~~~~vi~~sH~~ 314 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEE-------RRRKLITIMERYLKKIPQVILVSHDE 314 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHH-------HHHHHHHHHHHTGGGSSEEEEEESCG
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHH-------HHHHHHHHHHHHHhcCCEEEEEEChH
Confidence 35678999988 455667777799999999999999973 22333444444445688999999993
No 138
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=98.17 E-value=3.6e-07 Score=88.57 Aligned_cols=121 Identities=18% Similarity=0.238 Sum_probs=69.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccccc---------cccc-ccCCCCcccccchHHHHHH----HHh
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNYNDSS---------RVVD-GNFDDPRLTDYDTLLENVR----DLR 130 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~~~~~---------R~Ig-~vfQdp~l~d~~tV~enL~----~L~ 130 (621)
-.+|||+|++||||||+++.|+..+ +...|..|.+.... ...| .+++ +..++...+.+.+. .+.
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l-g~~vid~D~~~~~~~~~~~~~i~~~fG~~~~~-~g~ldr~~L~~~vF~~~~~~~ 89 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY-GAHVVNVDRIGHEVLEEVKEKLVELFGGSVLE-DGKVNRKKLAGIVFESRENLK 89 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH-CCEEEEHHHHHHHHHHHTHHHHHHHHCGGGBS-SSSBCHHHHHHHHTTCHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc-CCEEEECcHHHHHHHHHHHHHHHHHhChhhcC-CCCcCHHHHHHHHhCCHHHHH
Confidence 3589999999999999999999976 56678888762110 0112 1222 33344333332211 001
Q ss_pred cCCCccCccccccccCccCCceeecCCccEEEEecceeccccccCCCCeeEEecCCchHHHHH
Q 038045 131 EGKPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVK 193 (621)
Q Consensus 131 ~gk~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~Lir 193 (621)
....+..|.+......... ....++++|+.+++.......+|..|+++++.+.++.|
T Consensus 90 ~l~~i~hP~i~~~~~~~~~------~~~~~vv~d~pll~e~~~~~~~d~vi~v~a~~e~r~~R 146 (192)
T 2grj_A 90 KLELLVHPLMKKRVQEIIN------KTSGLIVIEAALLKRMGLDQLCDHVITVVASRETILKR 146 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHH------TCCEEEEEECTTTTTTTGGGGCSEEEEEECCHHHHHHH
T ss_pred HHHhhhCHHHHHHHHHHHH------HcCCEEEEEEeceeecChHHhCCEEEEEECCHHHHHHH
Confidence 0111222322222111100 01368999998777777778899999999998875544
No 139
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.16 E-value=2.8e-07 Score=92.76 Aligned_cols=143 Identities=9% Similarity=0.014 Sum_probs=70.1
Q ss_pred EeCCCcceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCcccc-cccccccCCCCcccccchHHHHHHHHhcC-----
Q 038045 59 AQKNDGIILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNYNDS-SRVVDGNFDDPRLTDYDTLLENVRDLREG----- 132 (621)
Q Consensus 59 I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~~~~-~R~Ig~vfQdp~l~d~~tV~enL~~L~~g----- 132 (621)
+++|+ +++|+||||||||||++.+++.+. .|.+ +.|.... ...+.|+..+... ..+...+..+...
T Consensus 27 l~~G~---i~~i~G~~GsGKTtl~~~l~~~~~-~g~~-~~g~~~~~~~~v~~~~~e~~~---~~~~~r~~~~g~~~~~~~ 98 (279)
T 1nlf_A 27 MVAGT---VGALVSPGGAGKSMLALQLAAQIA-GGPD-LLEVGELPTGPVIYLPAEDPP---TAIHHRLHALGAHLSAEE 98 (279)
T ss_dssp EETTS---EEEEEESTTSSHHHHHHHHHHHHH-TCCC-TTCCCCCCCCCEEEEESSSCH---HHHHHHHHHHHTTSCHHH
T ss_pred ccCCC---EEEEEcCCCCCHHHHHHHHHHHHh-cCCC-cCCCccCCCccEEEEECCCCH---HHHHHHHHHHHhhcChhh
Confidence 77999 999999999999999999998662 1222 1122111 1112221111000 0011111111000
Q ss_pred -----CCccC-ccccccccCccCCceeecCCccEEEEecceeccccccC--CCCeeEEecCCch-HHHHHHHHHHHHHcC
Q 038045 133 -----KPVQV-PIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRP--LLDLRVSVTGGVH-FDLVKRVLRDIQRVG 203 (621)
Q Consensus 133 -----k~V~~-p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s--~LDlkV~Vd~~~d-~~LirRI~Rdl~erG 203 (621)
..+.+ +..+......++++.+++ +.++.++.+++.|||+. .+|..- ... ..+++.+.+..++.|
T Consensus 99 ~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~----~~~~~~~~~~L~~l~~~~g 171 (279)
T 1nlf_A 99 RQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENA----SGPMAQVIGRMEAIAADTG 171 (279)
T ss_dssp HHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTC----HHHHHHHHHHHHHHHHHHC
T ss_pred hhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCc----hHHHHHHHHHHHHHHHHcC
Confidence 00000 111223334455544333 33344677888888888 444310 011 345555555556779
Q ss_pred CCceehHhHHHHH
Q 038045 204 QEPEEIIQQISET 216 (621)
Q Consensus 204 ~Ti~~VtHd~eea 216 (621)
.|++.++|+....
T Consensus 172 ~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 172 CSIVFLHHASKGA 184 (279)
T ss_dssp CEEEEEEEC----
T ss_pred CEEEEEecCCCcc
Confidence 9999999986543
No 140
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.16 E-value=7e-07 Score=84.08 Aligned_cols=60 Identities=15% Similarity=0.034 Sum_probs=43.2
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCcccc-cccccccCCCCcccccchHHHHHHH
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNYNDS-SRVVDGNFDDPRLTDYDTLLENVRD 128 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~~~~-~R~Ig~vfQdp~l~d~~tV~enL~~ 128 (621)
+++|+||||||||||+++|++. ..|.+.+++.... ....+++++....+...++.+++..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~--~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 64 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQ--LDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITD 64 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH--SSSEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcc--cCCeEEEcccchhhhhccccccCccchhHHHHHHHHHHH
Confidence 8999999999999999999984 4577777764221 2245666665544555677777765
No 141
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.13 E-value=8.9e-07 Score=91.21 Aligned_cols=63 Identities=19% Similarity=0.131 Sum_probs=44.6
Q ss_pred EeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEE---CCcccc------c-ccccccCCCCccc-----ccchH
Q 038045 59 AQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISM---DNYNDS------S-RVVDGNFDDPRLT-----DYDTL 122 (621)
Q Consensus 59 I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~l---Dg~~~~------~-R~Ig~vfQdp~l~-----d~~tV 122 (621)
+..|+ +++|+||||||||||+++|. .. |..|.|.+ +|.+.. . +.+++++|.|... +++++
T Consensus 162 ~l~G~---i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 162 YLEGF---ICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HTTTC---EEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred hccCc---EEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH
Confidence 34566 99999999999999999999 87 89999998 775321 1 2578999998653 55666
Q ss_pred HHHH
Q 038045 123 LENV 126 (621)
Q Consensus 123 ~enL 126 (621)
+++
T Consensus 238 -e~l 240 (302)
T 2yv5_A 238 -REV 240 (302)
T ss_dssp -GGG
T ss_pred -HHH
Confidence 655
No 142
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.11 E-value=1.4e-08 Score=99.78 Aligned_cols=36 Identities=17% Similarity=0.232 Sum_probs=29.2
Q ss_pred EeCCCcceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 038045 59 AQKNDGIILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNY 100 (621)
Q Consensus 59 I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~ 100 (621)
.++|. +|+|.|++||||||++++|++. .|.|.+.+.
T Consensus 17 ~~~g~---~i~i~G~~GsGKSTl~~~L~~~---~g~v~~~~~ 52 (230)
T 2vp4_A 17 GTQPF---TVLIEGNIGSGKTTYLNHFEKY---KNDICLLTE 52 (230)
T ss_dssp TCCCE---EEEEECSTTSCHHHHHHTTGGG---TTTEEEECC
T ss_pred CCCce---EEEEECCCCCCHHHHHHHHHhc---cCCeEEEec
Confidence 45666 9999999999999999999997 355655554
No 143
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.08 E-value=2.2e-07 Score=91.65 Aligned_cols=142 Identities=12% Similarity=0.097 Sum_probs=81.3
Q ss_pred EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccc-------ccccccccCCCCc-ccccc
Q 038045 49 FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNYND-------SSRVVDGNFDDPR-LTDYD 120 (621)
Q Consensus 49 ~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~~~-------~~R~Ig~vfQdp~-l~d~~ 120 (621)
..+++++++.+++| ++|.||+|||||||+++|++.. ..+.|.+++... ..+.++++||... ..+..
T Consensus 38 ~~~~~~~~~~~~~g-----~ll~G~~G~GKTtl~~~i~~~~-~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 111 (254)
T 1ixz_A 38 PSRFHEMGARIPKG-----VLLVGPPGVGKTHLARAVAGEA-RVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 111 (254)
T ss_dssp HHHHHHTTCCCCSE-----EEEECCTTSSHHHHHHHHHHHT-TCCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEE
T ss_pred HHHHHHcCCCCCCe-----EEEECCCCCCHHHHHHHHHHHh-CCCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeE
Confidence 34577777777654 8899999999999999999998 477888876421 1123556666543 33445
Q ss_pred hHHHHHHHHhcCCCcc--------CccccccccCccCCceeecCCccEEEEecceeccccccC--CCCeeEEecCCchHH
Q 038045 121 TLLENVRDLREGKPVQ--------VPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLRP--LLDLRVSVTGGVHFD 190 (621)
Q Consensus 121 tV~enL~~L~~gk~V~--------~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~s--~LDlkV~Vd~~~d~~ 190 (621)
.+.+++..+....... ....+......++++.+++..+.+...++.. +-+.+.. .+|..+.+..+...
T Consensus 112 ~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~-ld~~l~r~~rf~~~i~i~~p~~~- 189 (254)
T 1ixz_A 112 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI-LDPALLRPGRFDRQIAIDAPDVK- 189 (254)
T ss_dssp EEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGG-SCGGGGSTTSSCEEEECCSCCHH-
T ss_pred EEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchh-CCHHHcCCCcCCeEEeeCCcCHH-
Confidence 5555554432111000 0001111233456665555555555556643 3333333 68998988877543
Q ss_pred HHHHHHHH
Q 038045 191 LVKRVLRD 198 (621)
Q Consensus 191 LirRI~Rd 198 (621)
...++.+.
T Consensus 190 ~r~~il~~ 197 (254)
T 1ixz_A 190 GREQILRI 197 (254)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33334443
No 144
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=98.08 E-value=3.1e-06 Score=80.47 Aligned_cols=33 Identities=27% Similarity=0.456 Sum_probs=28.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 038045 66 ILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNY 100 (621)
Q Consensus 66 iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~ 100 (621)
.+|+|+|++||||||++++|++ + +...+..|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~-g~~~i~~d~~ 34 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-L-GAYVLDADKL 34 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-T-TCEEEEHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH-C-CCEEEEccHH
Confidence 4799999999999999999999 6 5666777764
No 145
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.07 E-value=1.8e-07 Score=93.96 Aligned_cols=145 Identities=12% Similarity=0.079 Sum_probs=84.0
Q ss_pred eCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccc-------ccccccccCCCCc-cc
Q 038045 46 KGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNYND-------SSRVVDGNFDDPR-LT 117 (621)
Q Consensus 46 ~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~~~-------~~R~Ig~vfQdp~-l~ 117 (621)
++...+++++++.+++| ++|.||+|||||||+++|++.+ ..+.|.+++... ..+.++++||... ..
T Consensus 59 ~~~~~~l~~~~~~~~~g-----vll~Gp~GtGKTtl~~~i~~~~-~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 132 (278)
T 1iy2_A 59 LKNPSRFHEMGARIPKG-----VLLVGPPGVGKTHLARAVAGEA-RVPFITASGSDFVEMFVGVGAARVRDLFETAKRHA 132 (278)
T ss_dssp HHCHHHHHHTTCCCCCE-----EEEECCTTSSHHHHHHHHHHHT-TCCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSC
T ss_pred HHCHHHHHHcCCCCCCe-----EEEECCCcChHHHHHHHHHHHc-CCCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcC
Confidence 33445677888877654 8899999999999999999998 477888876421 1123556666543 34
Q ss_pred ccchHHHHHHHHhcCCCcc--------CccccccccCccCCceeecCCccEEEEecceecccccc--CCCCeeEEecCCc
Q 038045 118 DYDTLLENVRDLREGKPVQ--------VPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALSEKLR--PLLDLRVSVTGGV 187 (621)
Q Consensus 118 d~~tV~enL~~L~~gk~V~--------~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLlDEp~--s~LDlkV~Vd~~~ 187 (621)
+..++.+++..+....... ....+......++++.+++..+.++..++.+ +-+.+. ..+|..+.+..+.
T Consensus 133 ~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~-ld~~l~r~~rf~~~i~i~~p~ 211 (278)
T 1iy2_A 133 PCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI-LDPALLRPGRFDRQIAIDAPD 211 (278)
T ss_dssp SEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTS-SCHHHHSTTSSCCEEECCCCC
T ss_pred CcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchh-CCHhHcCCCcCCeEEEeCCcC
Confidence 4455556665432111000 0011112234556666665555666666643 222222 2688888888775
Q ss_pred hHHHHHHHHHH
Q 038045 188 HFDLVKRVLRD 198 (621)
Q Consensus 188 d~~LirRI~Rd 198 (621)
.. ...++.+.
T Consensus 212 ~~-~r~~il~~ 221 (278)
T 1iy2_A 212 VK-GREQILRI 221 (278)
T ss_dssp HH-HHHHHHHH
T ss_pred HH-HHHHHHHH
Confidence 43 33344443
No 146
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.07 E-value=1.7e-07 Score=89.66 Aligned_cols=57 Identities=19% Similarity=0.260 Sum_probs=40.7
Q ss_pred ceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhCCCeeEE--EECCc
Q 038045 41 PLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFMPSIAVI--SMDNY 100 (621)
Q Consensus 41 ~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI--~lDg~ 100 (621)
++++..|...+.+..++..++|+ +|+|+|||||||||+++.|++.++..|.+ .+|+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~g~---~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d 62 (200)
T 3uie_A 4 NIKWHECSVEKVDRQRLLDQKGC---VIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGD 62 (200)
T ss_dssp ------CCCCHHHHHHHHTSCCE---EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCcccccccCHHHHHHhcCCCCe---EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCc
Confidence 45555666666677777777888 99999999999999999999988423444 77764
No 147
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.06 E-value=6.6e-07 Score=93.16 Aligned_cols=67 Identities=18% Similarity=0.120 Sum_probs=41.3
Q ss_pred eEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEE---CCcccc------cccccccCCCCcccc----cchH
Q 038045 57 LLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISM---DNYNDS------SRVVDGNFDDPRLTD----YDTL 122 (621)
Q Consensus 57 L~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~l---Dg~~~~------~R~Ig~vfQdp~l~d----~~tV 122 (621)
+.+.+|+ +++|+||||||||||+++|.|.. |..|.|.+ +|.... ....++++|.|.+.. .+++
T Consensus 168 ~~~~~G~---~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~ 244 (307)
T 1t9h_A 168 IPHFQDK---TTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE 244 (307)
T ss_dssp GGGGTTS---EEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH
T ss_pred HhhcCCC---EEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH
Confidence 4567888 99999999999999999999998 88999988 554321 112689999998654 4667
Q ss_pred HHHHH
Q 038045 123 LENVR 127 (621)
Q Consensus 123 ~enL~ 127 (621)
+++.
T Consensus 245 -e~l~ 248 (307)
T 1t9h_A 245 -EELG 248 (307)
T ss_dssp -HHHG
T ss_pred -HHHH
Confidence 7773
No 148
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.05 E-value=9.6e-07 Score=84.13 Aligned_cols=37 Identities=22% Similarity=0.217 Sum_probs=31.2
Q ss_pred EeCCCcceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECC
Q 038045 59 AQKNDGIILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDN 99 (621)
Q Consensus 59 I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg 99 (621)
+++|+ +++|+||+|||||||++.|++ .++.++++++.
T Consensus 17 i~~G~---~~~i~G~~GsGKTtl~~~l~~-~~~~~v~~i~~ 53 (220)
T 2cvh_A 17 FAPGV---LTQVYGPYASGKTTLALQTGL-LSGKKVAYVDT 53 (220)
T ss_dssp BCTTS---EEEEECSTTSSHHHHHHHHHH-HHCSEEEEEES
T ss_pred CcCCE---EEEEECCCCCCHHHHHHHHHH-HcCCcEEEEEC
Confidence 78899 999999999999999999999 43456666664
No 149
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.00 E-value=1.9e-06 Score=82.37 Aligned_cols=50 Identities=24% Similarity=0.266 Sum_probs=30.5
Q ss_pred CcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 038045 47 GFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNY 100 (621)
Q Consensus 47 G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~ 100 (621)
+...+++++||.+.++. +|+|+|++||||||+++.|++.+ +...+..|.+
T Consensus 10 ~~~~~~~~~~~~~~~~~---~i~l~G~~GsGKsTl~~~La~~l-~~~~i~~d~~ 59 (199)
T 3vaa_A 10 GVDLGTENLYFQSNAMV---RIFLTGYMGAGKTTLGKAFARKL-NVPFIDLDWY 59 (199)
T ss_dssp --------------CCC---EEEEECCTTSCHHHHHHHHHHHH-TCCEEEHHHH
T ss_pred CCCCCCCceeEecCCCC---EEEEEcCCCCCHHHHHHHHHHHc-CCCEEcchHH
Confidence 44567999999999998 99999999999999999999987 4445666654
No 150
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.00 E-value=4.1e-07 Score=91.82 Aligned_cols=57 Identities=14% Similarity=0.090 Sum_probs=39.4
Q ss_pred eecce-eeee-CcEEEEeecceEEeC---CCcceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEEC
Q 038045 38 IQDPL-SFEK-GFFVVIRACQLLAQK---NDGIILIGLAGPSGAGKTIFTEKILNFMPSIAVISMD 98 (621)
Q Consensus 38 v~~~l-sf~~-G~~~~Lk~IsL~I~~---Ge~~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lD 98 (621)
..+++ +|.+ +...+|++++|.+.+ |+ +|+|+|++||||||+++.|++.+ +...+..|
T Consensus 19 ~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~---~i~l~G~~GsGKSTl~~~La~~l-g~~~~d~d 80 (250)
T 3nwj_A 19 ETGSLLHSPFDEEQQILKKKAEEVKPYLNGR---SMYLVGMMGSGKTTVGKIMARSL-GYTFFDCD 80 (250)
T ss_dssp -------------CHHHHHHHHTTHHHHTTC---CEEEECSTTSCHHHHHHHHHHHH-TCEEEEHH
T ss_pred EEcceeeEEecCcchhhhhhhhhhhhhcCCC---EEEEECCCCCCHHHHHHHHHHhc-CCcEEeCc
Confidence 45567 7777 777899999999999 99 89999999999999999999977 33334443
No 151
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.97 E-value=1.5e-06 Score=82.29 Aligned_cols=24 Identities=38% Similarity=0.690 Sum_probs=23.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFMP 90 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLlP 90 (621)
+++|+||||||||||+++|++++|
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 899999999999999999999984
No 152
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.97 E-value=1e-06 Score=97.51 Aligned_cols=48 Identities=23% Similarity=0.333 Sum_probs=43.3
Q ss_pred EEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcc
Q 038045 51 VIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYN 101 (621)
Q Consensus 51 ~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~ 101 (621)
+++++++.+++|+ +++|+||||||||||+++|++++ |+.|.|.++|..
T Consensus 249 ~l~~l~~~v~~g~---~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~ 297 (511)
T 2oap_1 249 VLAYLWLAIEHKF---SAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTR 297 (511)
T ss_dssp HHHHHHHHHHTTC---CEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSC
T ss_pred HHHHHHHHHhCCC---EEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcc
Confidence 5677888889999 89999999999999999999999 789999998853
No 153
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.95 E-value=3.3e-06 Score=78.21 Aligned_cols=36 Identities=19% Similarity=0.250 Sum_probs=29.0
Q ss_pred CCCcceEEEEECCCCCcHHHHHHHHHhhCCCee--EEEECC
Q 038045 61 KNDGIILIGLAGPSGAGKTIFTEKILNFMPSIA--VISMDN 99 (621)
Q Consensus 61 ~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP~sG--vI~lDg 99 (621)
+|+ .++|.||+|||||||+++|++.++..| .+.+++
T Consensus 35 ~g~---~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~ 72 (149)
T 2kjq_A 35 HGQ---FIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDA 72 (149)
T ss_dssp CCS---EEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEET
T ss_pred CCC---EEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcH
Confidence 678 899999999999999999999882234 555543
No 154
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.95 E-value=1.2e-06 Score=81.92 Aligned_cols=29 Identities=21% Similarity=0.339 Sum_probs=26.1
Q ss_pred EEeCCCcceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 58 LAQKNDGIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 58 ~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
.+.+|+ .++|.||+|+|||||+++|++.+
T Consensus 34 ~~~~g~---~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 34 NPEEGK---GLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CGGGCC---EEEECCSSSSSHHHHHHHHHHHH
T ss_pred cccCCC---EEEEECCCCCCHHHHHHHHHHHH
Confidence 356678 89999999999999999999987
No 155
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.94 E-value=1.4e-06 Score=92.60 Aligned_cols=38 Identities=24% Similarity=0.425 Sum_probs=32.9
Q ss_pred EeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CC-eeEEEECC
Q 038045 59 AQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PS-IAVISMDN 99 (621)
Q Consensus 59 I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~-sGvI~lDg 99 (621)
+++|+ +++|+||||||||||+++|++++ |. .|.|.+.+
T Consensus 133 ~~~g~---~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e 172 (372)
T 2ewv_A 133 HRKMG---LILVTGPTGSGKSTTIASMIDYINQTKSYHIITIE 172 (372)
T ss_dssp TSSSE---EEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEE
T ss_pred hcCCC---EEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEec
Confidence 67788 99999999999999999999998 65 78885544
No 156
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.91 E-value=5.3e-06 Score=88.16 Aligned_cols=69 Identities=14% Similarity=0.115 Sum_probs=48.7
Q ss_pred EeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC--CCeeEEEEC-Ccc---cccccccccCCCCcccccchHHH
Q 038045 52 IRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM--PSIAVISMD-NYN---DSSRVVDGNFDDPRLTDYDTLLE 124 (621)
Q Consensus 52 Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl--P~sGvI~lD-g~~---~~~R~Ig~vfQdp~l~d~~tV~e 124 (621)
++++++.+ +|+ +++|+||||||||||+++|+|.. |..|.|..+ |.. ...+.+++++|++.+++..++.+
T Consensus 206 l~~L~~~~-~G~---~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 206 LKPLEEAL-TGR---ISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp HHHHHHHH-TTS---EEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHT
T ss_pred HHHHHHhc-CCC---EEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHH
Confidence 45566543 678 99999999999999999999987 578999886 531 22346788999888888887766
No 157
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.88 E-value=8.9e-06 Score=81.50 Aligned_cols=57 Identities=12% Similarity=0.238 Sum_probs=37.2
Q ss_pred cEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHH-cCCCceehHhHHHHH
Q 038045 159 RIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQR-VGQEPEEIIQQISET 216 (621)
Q Consensus 159 rVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~e-rG~Ti~~VtHd~eea 216 (621)
.-+|++|.-+ ..-+++..|+++|++++.+.+..|+..+...+ .+.+...+..++...
T Consensus 129 ~~~V~~GRd~-gt~V~pda~lkifl~A~~e~Ra~Rr~~~l~~~~~~~~~~~~~~~i~~r 186 (233)
T 3r20_A 129 GRVVVEGRDI-GTVVLPDADVKIFLTASAEERARRRNAQNVANGLPDDYATVLADVQRR 186 (233)
T ss_dssp SCEEEEESSC-CCCCCTTCSEEEEEECCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CcEEEecccc-eeEEcCCCCEEEEEECCHHHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 5677788522 12234456899999999999888777665432 245666666666544
No 158
>1yem_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.30A {Pyrococcus furiosus} SCOP: d.63.1.2
Probab=97.86 E-value=4.3e-05 Score=73.54 Aligned_cols=118 Identities=26% Similarity=0.438 Sum_probs=88.8
Q ss_pred ceeEEecCCCCCcccccceeEEe--ecCCeeEEEeeeeecCCCeEeccceeeEEEeeeecc------eeccCceEEEEEe
Q 038045 241 TYDIYLLPPGEDPESCQSYLRMR--NKDGKYSLMFEEWVTDIPFVISPRITFEVSVRLLGG------LMALGYTIATILK 312 (621)
Q Consensus 241 ~aDIYi~P~~~~~e~~~d~Irvr--~~~g~~~L~f~e~i~d~~fIi~P~~~FeV~~~~LgG------ll~lgy~i~~~~~ 312 (621)
..|.|+..+.. .++|+| ..++++.|++-... +++. +.++++...+-.. |..+||.....++
T Consensus 39 Q~d~Yfd~p~~------~~LRIR~~~~~~~~~lT~K~p~-~g~~----k~~~E~e~~v~d~~~~~~iL~~LG~~~~~~i~ 107 (179)
T 1yem_A 39 QEDVYFEVPRP------KLLRIRGVHNLKKYYLTFKEIL-DENN----EEFYEVEFEIGDFEKAVEVFKRLGFKIQATIK 107 (179)
T ss_dssp EEEEEECCCTT------EEEEEEEETTTTEEEEEEEEEC-SSSS----CEEEEEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEEEcCCCC------CEEEEEEEcCCCeEEEEEeccC-CCCc----cceeEEEEEeCCHHHHHHHHHHCCCcEEEEEE
Confidence 45777655533 689999 55788888886665 5543 2223333222111 3467999999988
Q ss_pred ecceeeeCCCceEEehhhHhhcCceeEEEeccc------HHHHHHHHHHhCCCCC-ccchhHHHHH
Q 038045 313 RSSHVFCDDRGVCVKIDWLEQLNRQYIQVQGKD------RLIVKNVAEQLGLEGS-YVPRTYIEQI 371 (621)
Q Consensus 313 ~~~~i~~d~~gv~i~v~~le~l~~~~i~i~g~~------r~~V~~~~~~L~l~g~-~i~~~y~e~i 371 (621)
-...+|.-+. ..+.+|+++.+| +|+-|-..+ +..+.+++.+|||+.. .+++||+|++
T Consensus 108 K~R~~~~~~~-~~i~lD~~~~lG-~f~EIE~~~~~~e~~~~~~~~ll~~LGi~~~~~~~~sY~eLl 171 (179)
T 1yem_A 108 KKRWVYKLNG-VTLEVNRVEGIG-DFVDIEVISDSPEEAKEKIWEVAKMLGLKEEDVEPRLYLELI 171 (179)
T ss_dssp EEEEEEEETT-EEEEEEEETTTE-EEEEEEEECSCHHHHHHHHHHHHHHTTCCGGGBCCSCTTTTC
T ss_pred EEEEEEEECC-EEEEEEecCCCC-CEEEEEEecCChHHHHHHHHHHHHHcCCChhhceehhHHHHH
Confidence 8888888887 999999999998 898888665 7899999999999988 9999999877
No 159
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.85 E-value=7e-06 Score=78.13 Aligned_cols=35 Identities=29% Similarity=0.237 Sum_probs=28.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNY 100 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~ 100 (621)
+.+|+|+|++||||||+++.|++.+ +...|..|.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l-g~~~i~~d~~ 52 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC-GYPFIEGDAL 52 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH-TCCEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh-CCEEEeCCcC
Confidence 3489999999999999999999987 3445555654
No 160
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.82 E-value=5.4e-06 Score=76.85 Aligned_cols=56 Identities=16% Similarity=0.200 Sum_probs=35.9
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCcccc------cccccccCCCCcccccchHHHH
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNYNDS------SRVVDGNFDDPRLTDYDTLLEN 125 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~~~~------~R~Ig~vfQdp~l~d~~tV~en 125 (621)
+++|+|++||||||++++|++.+ |.+.+|+.... ....|+.++++..+++.+..++
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~~---g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 71 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQL---HAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALND 71 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH---TCEEEEGGGGCCHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHhh---CcEEEeCccccchHHHHHhhcCcCCCccccccHHHHHHH
Confidence 89999999999999999999976 44555542211 1135666665433333333333
No 161
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.81 E-value=1.4e-05 Score=76.84 Aligned_cols=34 Identities=26% Similarity=0.472 Sum_probs=27.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNY 100 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~ 100 (621)
+.+|+|+|++||||||+++.|+. + +...|..|.+
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-l-g~~~id~D~~ 37 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-L-GINVIDADII 37 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-T-TCEEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-c-CCEEEEccHH
Confidence 46899999999999999999998 5 4445665543
No 162
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.76 E-value=4.4e-06 Score=78.67 Aligned_cols=35 Identities=26% Similarity=0.541 Sum_probs=28.7
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 038045 64 GIILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNY 100 (621)
Q Consensus 64 ~~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~ 100 (621)
++.+|+|+|++||||||+++.|+.. +...|..|.+
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~--g~~~id~d~~ 41 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW--GYPVLDLDAL 41 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT--TCCEEEHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC--CCEEEcccHH
Confidence 4679999999999999999999986 4455666654
No 163
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=97.71 E-value=1e-05 Score=79.97 Aligned_cols=142 Identities=15% Similarity=0.171 Sum_probs=81.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCcc-----ccc-------cccc-ccCCCCcccccchHHHHHHH---
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNYN-----DSS-------RVVD-GNFDDPRLTDYDTLLENVRD--- 128 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~~-----~~~-------R~Ig-~vfQdp~l~d~~tV~enL~~--- 128 (621)
+.-|||+|..||||||++++++. + +..+|..|... +.. ...| -++......+...+.+.+..
T Consensus 9 ~~~iglTGgigsGKStv~~~l~~-~-g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~~ 86 (210)
T 4i1u_A 9 MYAIGLTGGIGSGKTTVADLFAA-R-GASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDED 86 (210)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH-T-TCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHH-C-CCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCHH
Confidence 56799999999999999999998 4 56677777421 000 0111 12222233444444444322
Q ss_pred -HhcCCCccCccccccccCccCCceeecCCccEEEEecceecc-ccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCc
Q 038045 129 -LREGKPVQVPIYDFESSSRTGYRTVEVPSSRIVIIEGIYALS-EKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEP 206 (621)
Q Consensus 129 -L~~gk~V~~p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLl-DEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti 206 (621)
+..-..+-.|........... -....++++|..+++. ......+|..|+|+++.+.++.|.+.| .|.+.
T Consensus 87 ~~~~L~~i~HP~I~~~~~~~~~-----~~~~~~vv~d~pLL~E~~~~~~~~D~vi~V~ap~e~r~~Rl~~R----dg~s~ 157 (210)
T 4i1u_A 87 ARRRLEAITHPLIRAETEREAR-----DAQGPYVIFVVPLLVESRNWKARCDRVLVVDCPVDTQIARVMQR----NGFTR 157 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----TCCSSSEEEECTTCTTCHHHHHHCSEEEEEECCHHHHHHHHHHH----HCCCH
T ss_pred HHHHHHHHhhHHHHHHHHHHHH-----hcCCCEEEEEEecccccCCccccCCeEEEEECCHHHHHHHHHhc----CCCCH
Confidence 000001111211111000000 0123578899988877 666678999999999988765554444 38888
Q ss_pred eehHhHHHHHh
Q 038045 207 EEIIQQISETS 217 (621)
Q Consensus 207 ~~VtHd~eea~ 217 (621)
+.+...+...+
T Consensus 158 eea~~ri~~Q~ 168 (210)
T 4i1u_A 158 EQVEAIIARQA 168 (210)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHHcC
Confidence 88877766544
No 164
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.71 E-value=4.5e-06 Score=89.63 Aligned_cols=38 Identities=24% Similarity=0.389 Sum_probs=33.3
Q ss_pred EeCCCcceEEEEECCCCCcHHHHHHHHHh------------hC-CCeeEEEECC
Q 038045 59 AQKNDGIILIGLAGPSGAGKTIFTEKILN------------FM-PSIAVISMDN 99 (621)
Q Consensus 59 I~~Ge~~iIVGI~GpSGSGKSTLlr~Lag------------Ll-P~sGvI~lDg 99 (621)
+..|. .+||+|+||||||||+++|.| .. |..|.+.+.|
T Consensus 17 v~~g~---~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~ 67 (392)
T 1ni3_A 17 PGNNL---KTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD 67 (392)
T ss_dssp SSSCC---EEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred ccCCC---EEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCC
Confidence 55677 899999999999999999999 34 7889999987
No 165
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.70 E-value=9.6e-07 Score=88.10 Aligned_cols=41 Identities=20% Similarity=0.370 Sum_probs=31.5
Q ss_pred ceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCc
Q 038045 56 QLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNY 100 (621)
Q Consensus 56 sL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~ 100 (621)
++.+.+ + +++|+||||||||||+++|++++ |+.|.|.++|.
T Consensus 22 ~~~~~~-~---~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~ 63 (227)
T 1qhl_A 22 TFDLDE-L---VTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNT 63 (227)
T ss_dssp EECHHH-H---HHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-----
T ss_pred EEEEcC-c---EEEEECCCCCCHHHHHHHHhcccccCCCeEEECCE
Confidence 345555 6 89999999999999999999999 88899988875
No 166
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.70 E-value=1.5e-05 Score=83.01 Aligned_cols=45 Identities=18% Similarity=0.208 Sum_probs=36.1
Q ss_pred EeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECC
Q 038045 52 IRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDN 99 (621)
Q Consensus 52 Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg 99 (621)
+++++|.+.+++ +++|+|++|+||||++..|++.+ +..+.|.+.+
T Consensus 95 ~~~l~~~~~~~~---vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid 140 (320)
T 1zu4_A 95 KYRIDFKENRLN---IFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 140 (320)
T ss_dssp -CCCCCCTTSCE---EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ccCccccCCCCe---EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 367788777777 99999999999999999999998 5555555543
No 167
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.69 E-value=3.9e-05 Score=78.69 Aligned_cols=40 Identities=28% Similarity=0.392 Sum_probs=28.1
Q ss_pred eCCCcceEEEEECCCCCcHHHHHHHHHh-hC-CCeeEEEECCc
Q 038045 60 QKNDGIILIGLAGPSGAGKTIFTEKILN-FM-PSIAVISMDNY 100 (621)
Q Consensus 60 ~~Ge~~iIVGI~GpSGSGKSTLlr~Lag-Ll-P~sGvI~lDg~ 100 (621)
..+..+. +.|.||+|+||||++++|++ ++ |+.|.+.+++.
T Consensus 32 ~~~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~ 73 (354)
T 1sxj_E 32 QPRDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVR 73 (354)
T ss_dssp CTTCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------
T ss_pred hCCCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecce
Confidence 3444344 89999999999999999999 66 78888888764
No 168
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.69 E-value=4.2e-05 Score=72.16 Aligned_cols=33 Identities=18% Similarity=0.446 Sum_probs=26.9
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNY 100 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~ 100 (621)
+|+|+|++||||||+++.|+..+ +.-.+..|.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l-g~~~~d~d~~ 36 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL-GVPYLSSGLL 36 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-TCCEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc-CCceeccchH
Confidence 79999999999999999999976 3445555544
No 169
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.68 E-value=1.4e-05 Score=76.78 Aligned_cols=27 Identities=33% Similarity=0.522 Sum_probs=23.3
Q ss_pred CCCcceEEEEECCCCCcHHHHHHHHHhhCC
Q 038045 61 KNDGIILIGLAGPSGAGKTIFTEKILNFMP 90 (621)
Q Consensus 61 ~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP 90 (621)
+|. +++|+||||||||||+++|.+++|
T Consensus 3 ~g~---~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPR---PVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --C---CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCC---EEEEECCCCCCHHHHHHHHHhhCc
Confidence 566 899999999999999999999874
No 170
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.66 E-value=2.6e-05 Score=73.47 Aligned_cols=27 Identities=19% Similarity=0.395 Sum_probs=24.7
Q ss_pred CCCcceEEEEECCCCCcHHHHHHHHHhhCC
Q 038045 61 KNDGIILIGLAGPSGAGKTIFTEKILNFMP 90 (621)
Q Consensus 61 ~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP 90 (621)
+|+ +++|+||||||||||+++|++.+|
T Consensus 4 ~g~---~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRK---TLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCC---EEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCC---EEEEECCCCCCHHHHHHHHHhhCC
Confidence 456 999999999999999999999884
No 171
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.65 E-value=1.6e-05 Score=82.41 Aligned_cols=87 Identities=20% Similarity=0.088 Sum_probs=54.2
Q ss_pred cceeeeeCcEEEEeecceEEeCC----CcceEEEEECCCCCcHHHHHHHHHhhCC-----CeeEEEECCcc-------cc
Q 038045 40 DPLSFEKGFFVVIRACQLLAQKN----DGIILIGLAGPSGAGKTIFTEKILNFMP-----SIAVISMDNYN-------DS 103 (621)
Q Consensus 40 ~~lsf~~G~~~~Lk~IsL~I~~G----e~~iIVGI~GpSGSGKSTLlr~LagLlP-----~sGvI~lDg~~-------~~ 103 (621)
++++..+|...+++++++.++.+ +.+-.++|.||+|+|||||+++|++.+. ..|.+..++.. ..
T Consensus 22 ~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~ 101 (334)
T 1in4_A 22 KSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLE 101 (334)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCC
T ss_pred ccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHcc
Confidence 34544456667888888888765 2222799999999999999999999871 12222222110 11
Q ss_pred cccccccCCCCcccccchHHHHHHH
Q 038045 104 SRVVDGNFDDPRLTDYDTLLENVRD 128 (621)
Q Consensus 104 ~R~Ig~vfQdp~l~d~~tV~enL~~ 128 (621)
...+.+++|...+.+ ++.+++..
T Consensus 102 ~~~v~~iDE~~~l~~--~~~e~L~~ 124 (334)
T 1in4_A 102 RGDVLFIDEIHRLNK--AVEELLYS 124 (334)
T ss_dssp TTCEEEEETGGGCCH--HHHHHHHH
T ss_pred CCCEEEEcchhhcCH--HHHHHHHH
Confidence 234666766555543 56666644
No 172
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.62 E-value=1.6e-05 Score=85.55 Aligned_cols=39 Identities=15% Similarity=0.247 Sum_probs=31.6
Q ss_pred EeCCCcceEEEEECCCCCcHHHHHHHHH--hhCC------CeeEEEECCc
Q 038045 59 AQKNDGIILIGLAGPSGAGKTIFTEKIL--NFMP------SIAVISMDNY 100 (621)
Q Consensus 59 I~~Ge~~iIVGI~GpSGSGKSTLlr~La--gLlP------~sGvI~lDg~ 100 (621)
+++|+ +++|+||||||||||++.|+ +..| ..++|++++.
T Consensus 175 I~~Ge---i~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 175 VETGS---ITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE 221 (400)
T ss_dssp EETTS---EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred cCCCc---EEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCC
Confidence 78999 99999999999999999654 4444 2458888875
No 173
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.58 E-value=2.3e-05 Score=76.84 Aligned_cols=33 Identities=18% Similarity=0.371 Sum_probs=26.2
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNY 100 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~ 100 (621)
+|+|+|++||||||+++.|++.+ +...+..|.+
T Consensus 18 ~i~i~G~~gsGKst~~~~l~~~l-g~~~~d~d~~ 50 (236)
T 1q3t_A 18 QIAIDGPASSGKSTVAKIIAKDF-GFTYLDTGAM 50 (236)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH-CCEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-CCceecCCCe
Confidence 89999999999999999999866 3334444443
No 174
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.55 E-value=6.6e-06 Score=77.70 Aligned_cols=45 Identities=24% Similarity=0.202 Sum_probs=32.4
Q ss_pred ecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 39 QDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 39 ~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
.++++|.++ ..++++ |.+.+|. .|+|+|++|||||||++.|.|..
T Consensus 6 ~~~~~~~~~-~~~l~~--~~~~~~~---~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 6 YQQTHFVMS-APDIRH--LPSDTGI---EVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp -----CEEE-ESSGGG--SSCSCSE---EEEEEECTTSSHHHHHTTTCCC-
T ss_pred hhhhhheee-cCCHhH--CCCCCCc---EEEEECCCCCCHHHHHHHHhCCC
Confidence 456667665 245666 7788887 89999999999999999999864
No 175
>2een_A Hypothetical protein PH1819; dimer, NPPSFA, national project on Pro structural and functional analyses; 1.65A {Pyrococcus horikoshii}
Probab=97.54 E-value=0.00016 Score=69.03 Aligned_cols=129 Identities=21% Similarity=0.321 Sum_probs=91.7
Q ss_pred CceeEEecCCCCCcccccceeEEe----ecCCeeEEEeeeeecCCCeEeccceeeEEEee-e---ecce-eccCceEEEE
Q 038045 240 QTYDIYLLPPGEDPESCQSYLRMR----NKDGKYSLMFEEWVTDIPFVISPRITFEVSVR-L---LGGL-MALGYTIATI 310 (621)
Q Consensus 240 ~~aDIYi~P~~~~~e~~~d~Irvr----~~~g~~~L~f~e~i~d~~fIi~P~~~FeV~~~-~---LgGl-l~lgy~i~~~ 310 (621)
...|+|.-.|+........++|+| ..++.+.+++-....++..-.++ ++++.+. . +..+ -.+|+..+..
T Consensus 29 ~q~d~YfDtp~~~L~~~~~~LRiR~~~~~~~~~~~lT~K~p~~~~~~~~r~--E~e~~v~~~~~~~~~~L~~lgl~~~~~ 106 (183)
T 2een_A 29 IHEDIYYQHPCRDFSKTDEALRIRIKRFNGHNEVFLTYKGPKIDEKSKTRL--EIEVEIQEDVDKYFELLDRLGFKEVLK 106 (183)
T ss_dssp EEEEEEEECSSSCHHHHTCEEEEEEEEETTEEEEEEEEEEEECCTTSCCEE--EEEEEECSCHHHHHHHHHHTTCEEEEE
T ss_pred EEEEeEEcCCCccHHhCCeEEEEeeeecCCCCEEEEEECCCcCCCCceeEE--EEEEeecCCHHHHHHHHHHCCCeEEEE
Confidence 356888777776655556789999 55678888875554444433343 4444443 1 2223 3489999988
Q ss_pred EeecceeeeCCCceEEehhhHhhcCceeEEEecc---------cHHHHHHHHHHhCCCCCccchhHHHHHH
Q 038045 311 LKRSSHVFCDDRGVCVKIDWLEQLNRQYIQVQGK---------DRLIVKNVAEQLGLEGSYVPRTYIEQIQ 372 (621)
Q Consensus 311 ~~~~~~i~~d~~gv~i~v~~le~l~~~~i~i~g~---------~r~~V~~~~~~L~l~g~~i~~~y~e~i~ 372 (621)
++....+|.-++++.+.+|+++.+|. |+-|-.. -+..+.+++.+||| ...+++||+|+++
T Consensus 107 ~~k~R~~~~~~~~~~v~lD~~~~lg~-f~EiE~e~~~~~~~~~~~~~~~~l~~~lgi-~~~~~~sY~ell~ 175 (183)
T 2een_A 107 VVKTREKYYVEKGVTITLDEVEGLGK-FIEIETLVKEKDEIPEAVEKLEKILRELGV-EKFERRSYLELLL 175 (183)
T ss_dssp EEEEEEEEEEETTEEEEEEEETTTEE-EEEEEEECSSGGGHHHHHHHHHHHHHHHTC-CCBCCSCHHHHHH
T ss_pred EEEEEEEEEeCCCEEEEEEeecCCee-EEEEEEecCCcccHHHHHHHHHHHHHHcCC-CCceeccHHHHHH
Confidence 88888777777239999999998875 7666542 35788999999999 9999999998873
No 176
>3ghx_A Adenylate cyclase CYAB; CYTH domain, antiparallel barrel, product complex, cyclic AMP, lyase; HET: CMP; 1.60A {Yersinia pestis} PDB: 3n0y_A* 3n0z_A* 3n10_A* 2fjt_A
Probab=97.49 E-value=0.00031 Score=67.42 Aligned_cols=123 Identities=19% Similarity=0.307 Sum_probs=87.2
Q ss_pred CceeEEecCCCCCcccccceeEEeecC--CeeEEEeeeeecCCCeEeccceeeEEEeee---ecc-eeccCceEEEEEee
Q 038045 240 QTYDIYLLPPGEDPESCQSYLRMRNKD--GKYSLMFEEWVTDIPFVISPRITFEVSVRL---LGG-LMALGYTIATILKR 313 (621)
Q Consensus 240 ~~aDIYi~P~~~~~e~~~d~Irvr~~~--g~~~L~f~e~i~d~~fIi~P~~~FeV~~~~---LgG-ll~lgy~i~~~~~~ 313 (621)
...|+|.-.|.........++|+|..+ |.+.+.+-++..+. ..++.+.- +.. |..+||..++.++-
T Consensus 40 ~q~d~yfd~p~~~l~~~~~~lRiR~~~~~~~~~~t~Kgp~~~~--------~~e~~v~d~~~~~~iL~~LG~~~~~~v~K 111 (179)
T 3ghx_A 40 HEKDIYLDANGQDLAKQQISMVLREMNPSGIRLWIVKGPGAER--------CEASNIEDVSKVQSMLATLGYHPAFTIEK 111 (179)
T ss_dssp EEEEEEEECTTCTTGGGTCEEEEEEEETTCCEEEEEECSSSSB--------EEEEECSCHHHHHHHHHHTTCEEEEEEEE
T ss_pred eEEEEEEeCCCccHHHCCcEEEEEEecCCCcEEEEEecCCCCc--------EEEEEcCCHHHHHHHHHHCCCcEEEEEEE
Confidence 345777666665555566788888764 55555543322211 11222221 112 34899999999998
Q ss_pred cceeeeCCCceEEehhhHhhcCceeEEEeccc---------HHHHHHHHHHhCCCC-CccchhHHHHHH
Q 038045 314 SSHVFCDDRGVCVKIDWLEQLNRQYIQVQGKD---------RLIVKNVAEQLGLEG-SYVPRTYIEQIQ 372 (621)
Q Consensus 314 ~~~i~~d~~gv~i~v~~le~l~~~~i~i~g~~---------r~~V~~~~~~L~l~g-~~i~~~y~e~i~ 372 (621)
...+|.-+. +.+.+|+++.+| +|+-|-..+ +..+.+++.+|||+. ..+++||+|+++
T Consensus 112 ~R~~y~~~~-~~i~LD~v~glG-~f~EIE~~~~d~~~~~~~~~~i~~l~~~LGi~~~~~~~~sY~eLl~ 178 (179)
T 3ghx_A 112 QRSIYFVGK-FHITVDHLTGLG-DFAEIAIMTDDATELDKLKAECRDFANTFGLQVDQQEPRSYRQLLG 178 (179)
T ss_dssp EEEEEEETT-EEEEEEEETTTE-EEEEEEEEESCGGGHHHHHHHHHHHHHHHTCCGGGBCCSCHHHHHT
T ss_pred EEEEEEECC-EEEEEEccCCCc-cEEEEEEEcCChhhHHHHHHHHHHHHHHcCcChhhceehhHHHHhh
Confidence 888999988 999999999998 898887543 478889999999988 589999998763
No 177
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.48 E-value=6.3e-05 Score=72.53 Aligned_cols=28 Identities=36% Similarity=0.517 Sum_probs=25.3
Q ss_pred eCCCcceEEEEECCCCCcHHHHHHHHHhhCC
Q 038045 60 QKNDGIILIGLAGPSGAGKTIFTEKILNFMP 90 (621)
Q Consensus 60 ~~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP 90 (621)
++|. +|+|+||||||||||++.|++.+|
T Consensus 6 ~~g~---~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGL---LIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCC---EEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCc---EEEEECcCCCCHHHHHHHHHhhCC
Confidence 4566 999999999999999999999984
No 178
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.47 E-value=5e-05 Score=70.72 Aligned_cols=33 Identities=21% Similarity=0.421 Sum_probs=27.6
Q ss_pred eecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 53 RACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 53 k~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
+++++.+.+| +.+|+||||||||||+++|..++
T Consensus 18 ~~~~~~~~~g----~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 18 KKVVIPFSKG----FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SCEEEECCSS----EEEEEECTTSSHHHHHHHHHHHT
T ss_pred ccEEEecCCC----cEEEECCCCCCHHHHHHHHHHHH
Confidence 4555666543 69999999999999999999988
No 179
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.47 E-value=2.4e-05 Score=83.61 Aligned_cols=61 Identities=15% Similarity=0.117 Sum_probs=44.7
Q ss_pred EEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEE-CCcccc-cccccccCCCC
Q 038045 49 FVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFMPSIAVISM-DNYNDS-SRVVDGNFDDP 114 (621)
Q Consensus 49 ~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~l-Dg~~~~-~R~Ig~vfQdp 114 (621)
..+++++++.+++|+ +++|.||+|||||||+++|++.. .|.+.. +.-... ...++++||.+
T Consensus 156 ~~~l~~~~~~i~~~~---~i~l~G~~GsGKSTl~~~l~~~~--~g~~~~~~~~~~~~~~~lg~~~q~~ 218 (377)
T 1svm_A 156 YDFLKCMVYNIPKKR---YWLFKGPIDSGKTTLAAALLELC--GGKALNVNLPLDRLNFELGVAIDQF 218 (377)
T ss_dssp HHHHHHHHHCCTTCC---EEEEECSTTSSHHHHHHHHHHHH--CCEEECCSSCTTTHHHHHGGGTTCS
T ss_pred HHHHHhcccccCCCC---EEEEECCCCCCHHHHHHHHHhhc--CCcEEEEeccchhHHHHHHHhcchh
Confidence 457888999999999 99999999999999999999976 344443 211111 11366777665
No 180
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.44 E-value=6.2e-05 Score=69.24 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=22.3
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLl 89 (621)
+|+|+||+||||||++++|++.+
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999999999988
No 181
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.39 E-value=0.00014 Score=68.47 Aligned_cols=38 Identities=24% Similarity=0.300 Sum_probs=31.3
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhhC-C-----------CeeEEEECCc
Q 038045 63 DGIILIGLAGPSGAGKTIFTEKILNFM-P-----------SIAVISMDNY 100 (621)
Q Consensus 63 e~~iIVGI~GpSGSGKSTLlr~LagLl-P-----------~sGvI~lDg~ 100 (621)
+..+.|+|+|++|||||||++.+.+.. + ..|.|.++|.
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~ 76 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGK 76 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCE
Confidence 345689999999999999999999976 4 3577777764
No 182
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=97.35 E-value=0.00018 Score=68.95 Aligned_cols=35 Identities=26% Similarity=0.476 Sum_probs=28.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNY 100 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~ 100 (621)
+.+|+|+|++||||||+++.|+..+ +...+..|..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~-g~~~~~~d~~ 37 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL-SMIYVDTGAM 37 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT-TCEEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc-CCceecCChH
Confidence 3479999999999999999999987 4445665554
No 183
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.34 E-value=4.9e-05 Score=78.56 Aligned_cols=36 Identities=36% Similarity=0.423 Sum_probs=31.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhhC---------CCeeEEEECCc
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNFM---------PSIAVISMDNY 100 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagLl---------P~sGvI~lDg~ 100 (621)
+.+++|+|+||||||||++.|.+.. |+.|.|.+||.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~ 48 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQ 48 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEE
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHH
Confidence 4489999999999999999999974 47788888875
No 184
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.32 E-value=6.2e-05 Score=79.29 Aligned_cols=39 Identities=18% Similarity=0.225 Sum_probs=31.0
Q ss_pred EeCCCcceEEEEECCCCCcHHHHHHHHHhhC--CCeeEEEECCc
Q 038045 59 AQKNDGIILIGLAGPSGAGKTIFTEKILNFM--PSIAVISMDNY 100 (621)
Q Consensus 59 I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl--P~sGvI~lDg~ 100 (621)
+++|+ ++.|.||+|||||||+..++... ++..+++++..
T Consensus 58 l~~G~---iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 58 LPRGR---VIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp EETTS---EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ccCCe---EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 77899 99999999999999999988655 44455666543
No 185
>2dc4_A PH1012 protein, 165AA long hypothetical protein; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.65A {Pyrococcus horikoshii}
Probab=97.32 E-value=0.0005 Score=64.45 Aligned_cols=120 Identities=25% Similarity=0.444 Sum_probs=84.7
Q ss_pred ceeEEecCCCCCcccccceeEEee--cCCeeEEEeeeeecCCCeEeccceeeEEEeeeecc---e-eccCceEEEEEeec
Q 038045 241 TYDIYLLPPGEDPESCQSYLRMRN--KDGKYSLMFEEWVTDIPFVISPRITFEVSVRLLGG---L-MALGYTIATILKRS 314 (621)
Q Consensus 241 ~aDIYi~P~~~~~e~~~d~Irvr~--~~g~~~L~f~e~i~d~~fIi~P~~~FeV~~~~LgG---l-l~lgy~i~~~~~~~ 314 (621)
..|.|+-.+.. .++|+|. .++++.+++-... +++.-.++ ++++.+..... + -.+|+.....+...
T Consensus 31 q~d~Yfdt~~~------~~LRiR~~~~~~~~~lT~K~~~-~g~~~~~~--E~e~~i~~~~~~~~~L~~lg~~~~~~~~k~ 101 (165)
T 2dc4_A 31 QEDVYFELPSP------KLLRVRKINNTGKSYITYKEIL-DKRNEEFY--ELEFEVQDPEGAIELFKRLGFKVQGVVKKR 101 (165)
T ss_dssp EEEEEECCSTT------EEEEEEEETTTTEEEEEEEEEC-SSSSCEEE--EEEEEBSCHHHHHHHHHHTTCCEEEEEEEE
T ss_pred EEEEEEcCCCC------CEEEEEEEcCCCEEEEEEeCcC-CCCceeee--EEEEEcCCHHHHHHHHHHcCCcEEEEEEEE
Confidence 45666644332 5788994 5778888876554 44443333 23333321111 1 25688888887777
Q ss_pred ceeeeCCCceEEehhhHhhcCceeEEEeccc------HHHHHHHHHHhCCCCC-ccchhHHHHH
Q 038045 315 SHVFCDDRGVCVKIDWLEQLNRQYIQVQGKD------RLIVKNVAEQLGLEGS-YVPRTYIEQI 371 (621)
Q Consensus 315 ~~i~~d~~gv~i~v~~le~l~~~~i~i~g~~------r~~V~~~~~~L~l~g~-~i~~~y~e~i 371 (621)
...|.-+. +.+.+|+.+.+| +|+-|--.+ +..+.+++.+|||+.. .+++||+|++
T Consensus 102 R~~~~~~~-~~i~lD~~~~~g-~~~EiE~~~~~~~~~~~~~~~l~~~lgi~~~~~~~~sY~ell 163 (165)
T 2dc4_A 102 RWIYKLNN-VTFELNRVEKAG-DFLDIEVITSNPEEGKKIIWDVARRLGLKEEDVEPKLYIELI 163 (165)
T ss_dssp EEEEEETT-EEEEEEEETTTE-EEEEEEECCSCHHHHHHHHHHHHHHTTCCGGGBCCSCHHHHC
T ss_pred EEEEEECC-EEEEEEecCCCc-cEEEEEEEcCCHHHHHHHHHHHHHHcCCCcccceehhHHHHh
Confidence 77777776 999999999988 897887665 7889999999999987 8999999875
No 186
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.30 E-value=0.0001 Score=79.75 Aligned_cols=34 Identities=24% Similarity=0.211 Sum_probs=32.3
Q ss_pred EeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhh
Q 038045 52 IRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNF 88 (621)
Q Consensus 52 Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagL 88 (621)
-++++|+++.++ .|+|+|+||||||||+++|++.
T Consensus 147 ~~~i~lelk~g~---~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 147 KRRLRLELMLIA---DVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp EEEEEEEECCSC---SEEEECCGGGCHHHHHHHHCSS
T ss_pred EeeeeeEEcCCC---EEEEECCCCCcHHHHHHHHHcC
Confidence 578999999999 8999999999999999999997
No 187
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.27 E-value=0.00014 Score=66.27 Aligned_cols=34 Identities=24% Similarity=0.327 Sum_probs=27.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 038045 66 ILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNY 100 (621)
Q Consensus 66 iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~ 100 (621)
.+|+|+|++||||||+++.|+..+ +...+..|.+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l-~~~~i~~d~~ 35 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL-KYPIIKGSSF 35 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH-CCCEEECCCH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh-CCeeecCccc
Confidence 489999999999999999999876 3345555544
No 188
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.26 E-value=0.00015 Score=68.36 Aligned_cols=44 Identities=20% Similarity=0.248 Sum_probs=32.3
Q ss_pred ecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 038045 54 ACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNY 100 (621)
Q Consensus 54 ~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~ 100 (621)
++|+...++. +|+|+|++||||||+++.|+..+.+...|..|..
T Consensus 2 ~~~~~~~~~~---~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~ 45 (184)
T 1y63_A 2 PGSMEQPKGI---NILITGTPGTGKTSMAEMIAAELDGFQHLEVGKL 45 (184)
T ss_dssp ----CCCSSC---EEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHH
T ss_pred CcCcCCCCCC---EEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHH
Confidence 4566676676 8999999999999999999998325556666654
No 189
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.26 E-value=7.4e-05 Score=69.63 Aligned_cols=34 Identities=29% Similarity=0.443 Sum_probs=28.6
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC-C-CeeEEEECCc
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFM-P-SIAVISMDNY 100 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLl-P-~sGvI~lDg~ 100 (621)
+|+|+|++||||||++++|++.+ + +...|.+|+.
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~ 42 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 42 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECCh
Confidence 89999999999999999999987 3 3337777764
No 190
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.11 E-value=0.00013 Score=75.76 Aligned_cols=42 Identities=17% Similarity=0.209 Sum_probs=32.5
Q ss_pred cceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECC
Q 038045 55 CQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDN 99 (621)
Q Consensus 55 IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg 99 (621)
+++...+++ +++|+|++||||||++..|++.+ +..+.|.+.+
T Consensus 97 ~~~~~~~~~---vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~ 139 (306)
T 1vma_A 97 LNVPPEPPF---VIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA 139 (306)
T ss_dssp CCCCSSSCE---EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcccCCCCe---EEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc
Confidence 344445556 99999999999999999999998 6555565543
No 191
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.10 E-value=7.8e-05 Score=76.57 Aligned_cols=54 Identities=22% Similarity=0.105 Sum_probs=40.2
Q ss_pred cceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCc
Q 038045 40 DPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNY 100 (621)
Q Consensus 40 ~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~ 100 (621)
+++++.++... ++++|. +++ +++|+|++|+||||++..|++.+ +..+.|.+.+.
T Consensus 80 ~~l~~~~~~~~--~~i~~~--~~~---~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~ 134 (295)
T 1ls1_A 80 EALKEALGGEA--RLPVLK--DRN---LWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (295)
T ss_dssp HHHHHHTTSSC--CCCCCC--SSE---EEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred HHHHHHHCCCC--ceeecC--CCe---EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 34444444332 677777 666 99999999999999999999998 55666766554
No 192
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.09 E-value=0.00017 Score=80.64 Aligned_cols=40 Identities=18% Similarity=0.217 Sum_probs=33.6
Q ss_pred EEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCee-EE-EECCc
Q 038045 58 LAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIA-VI-SMDNY 100 (621)
Q Consensus 58 ~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sG-vI-~lDg~ 100 (621)
.+++|+ +++|+|+||||||||+++|++.+ |..| .+ .+|+.
T Consensus 365 ~~~~G~---iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD 407 (552)
T 3cr8_A 365 RERQGF---TVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGD 407 (552)
T ss_dssp GGGSCE---EEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSH
T ss_pred ccccce---EEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCc
Confidence 356777 99999999999999999999999 7665 55 47874
No 193
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.09 E-value=0.0003 Score=68.75 Aligned_cols=28 Identities=29% Similarity=0.481 Sum_probs=25.1
Q ss_pred eCCCcceEEEEECCCCCcHHHHHHHHHhhCC
Q 038045 60 QKNDGIILIGLAGPSGAGKTIFTEKILNFMP 90 (621)
Q Consensus 60 ~~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP 90 (621)
.+|. +++|+||||||||||++.|.+.+|
T Consensus 17 ~~g~---~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRK---TLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCC---EEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCC---EEEEECcCCCCHHHHHHHHHhhCC
Confidence 3566 899999999999999999999885
No 194
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.08 E-value=0.00038 Score=65.48 Aligned_cols=36 Identities=22% Similarity=0.326 Sum_probs=29.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhhC------CC------eeEEEECCc
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNFM------PS------IAVISMDNY 100 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagLl------P~------sGvI~lDg~ 100 (621)
.+.|+|+|++|||||||++.|.+.. |. .|.|.++|.
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~ 52 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGK 52 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTE
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCE
Confidence 4579999999999999999999974 22 467778774
No 195
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.04 E-value=0.00016 Score=69.44 Aligned_cols=39 Identities=21% Similarity=0.239 Sum_probs=32.2
Q ss_pred EeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCee--EEEECCc
Q 038045 59 AQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIA--VISMDNY 100 (621)
Q Consensus 59 I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sG--vI~lDg~ 100 (621)
+++|. +|.|.|++||||||+++.|++.+ |..| .+.+|+.
T Consensus 22 ~~~~~---~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d 63 (211)
T 1m7g_A 22 NQRGL---TIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD 63 (211)
T ss_dssp TSSCE---EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred CCCCC---EEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECCh
Confidence 34555 89999999999999999999988 4566 8888753
No 196
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.02 E-value=0.00039 Score=69.47 Aligned_cols=34 Identities=26% Similarity=0.367 Sum_probs=29.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 038045 66 ILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNY 100 (621)
Q Consensus 66 iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~ 100 (621)
.++.|+||+|||||||++.|++.+ +.-.|..|++
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~-~~~~i~~D~~ 35 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET-GWPVVALDRV 35 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH-CCCEEECCSG
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC-CCeEEeccHH
Confidence 479999999999999999999877 4557888875
No 197
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.01 E-value=0.00029 Score=63.63 Aligned_cols=33 Identities=27% Similarity=0.403 Sum_probs=26.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 038045 66 ILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNY 100 (621)
Q Consensus 66 iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~ 100 (621)
.+|+|+|++||||||+++.| ..+ +...+.+|+.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~-g~~~i~~~~~ 34 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER-GAKVIVMSDV 34 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT-TCEEEEHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC-CCcEEEHhHH
Confidence 37999999999999999999 555 4446666544
No 198
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.98 E-value=0.00051 Score=63.36 Aligned_cols=33 Identities=27% Similarity=0.399 Sum_probs=26.5
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEE--EECCc
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFMPSIAVI--SMDNY 100 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLlP~sGvI--~lDg~ 100 (621)
+|.|+|++||||||+++.|+..++ .+.+ ..|.+
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l~-~~~~~~~~D~~ 39 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVLP-EPWLAFGVDSL 39 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSS-SCEEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC-CCeEEeccchH
Confidence 899999999999999999999883 2334 45544
No 199
>3n10_A Adenylate cyclase 2; CYTH domain, antiparallel barrel, product complex, cyclic AM; HET: CMP; 1.60A {Yersinia pestis} PDB: 3n0z_A* 3n0y_A* 2fjt_A
Probab=96.96 E-value=0.0043 Score=58.90 Aligned_cols=121 Identities=19% Similarity=0.295 Sum_probs=82.7
Q ss_pred ceeEEecCCCCCcccccceeEEeecC--CeeEEEeeeeecCCCeEeccceeeEEEeee----ecceeccCceEEEEEeec
Q 038045 241 TYDIYLLPPGEDPESCQSYLRMRNKD--GKYSLMFEEWVTDIPFVISPRITFEVSVRL----LGGLMALGYTIATILKRS 314 (621)
Q Consensus 241 ~aDIYi~P~~~~~e~~~d~Irvr~~~--g~~~L~f~e~i~d~~fIi~P~~~FeV~~~~----LgGll~lgy~i~~~~~~~ 314 (621)
..|+|...|+........++++|..+ +...+.+.+.- . +...++.+.. ..-+..+||..++.++-.
T Consensus 41 q~d~Yfd~p~~~l~~~~~~lRiR~~~~~~~~~lt~kg~~------~--~~e~e~~v~~~~~~~~~l~~lg~~~~~~~~k~ 112 (179)
T 3n10_A 41 EKDIYLDANGQDLAKQQISMVLREMNPSGIRLWIVKGPG------A--ERCEASNIEDVSKVQSMLATLGYHPAFTIEKQ 112 (179)
T ss_dssp EEEEEEECTTCTTGGGTCEEEEEEEETTCCEEEEEECSS------S--SBEEEEECSCHHHHHHHHHHTTCEEEEEEEEE
T ss_pred EEEEEEeCCChhHHhCCceEEEEecCCCceEEEEEcCCc------c--ccceeeccCCHHHHHHHHHhCCCeEEEEEEEE
Confidence 35777766666655566788888754 34445432111 0 1122222221 111457899999999988
Q ss_pred ceeeeCCCceEEehhhHhhcCceeEEEeccc---------HHHHHHHHHHhCCC-CCccchhHHHHH
Q 038045 315 SHVFCDDRGVCVKIDWLEQLNRQYIQVQGKD---------RLIVKNVAEQLGLE-GSYVPRTYIEQI 371 (621)
Q Consensus 315 ~~i~~d~~gv~i~v~~le~l~~~~i~i~g~~---------r~~V~~~~~~L~l~-g~~i~~~y~e~i 371 (621)
..+|.-+. +.+.+|+++.+| +|+-|-.-. ++.+.+++.+|||+ ...+++||+|++
T Consensus 113 R~~~~~~~-~~v~lD~v~~lG-~f~EiE~e~~~~~~~~~~~~~~~~l~~~LGl~~~~~~~~sY~eLL 177 (179)
T 3n10_A 113 RSIYFVGK-FHITVDHLTGLG-DFAEIAIMTDDATELDKLKAECRDFANTFGLQVDQQEPRSYRQLL 177 (179)
T ss_dssp EEEEEETT-EEEEEEEETTTE-EEEEEEEEESCGGGHHHHHHHHHHHHHHHTCCGGGBCCSCHHHHH
T ss_pred EEEEEECC-EEEEEEeccCCC-cEEEEEEEeCCCccHHHHHHHHHHHHHHcCcChhhcceecHHHHh
Confidence 88999888 999999999998 577765422 46788999999997 457899999886
No 200
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=96.91 E-value=4.7e-05 Score=89.70 Aligned_cols=93 Identities=5% Similarity=-0.022 Sum_probs=74.5
Q ss_pred cccccCccCCceeecCCccEEEEecc--eeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhc
Q 038045 141 DFESSSRTGYRTVEVPSSRIVIIEGI--YALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSA 218 (621)
Q Consensus 141 d~~~~~rsggq~qrVa~ArVLIvEG~--lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~ 218 (621)
+.....+|||++|++.+|++|..++. ++++|||++.||+ .+.+.+..+.+.+.+.|.|++.|+|+++.+.
T Consensus 459 ~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~-------~~~~~l~~~L~~L~~~G~TvivVtHd~~~~~- 530 (916)
T 3pih_A 459 SRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHP-------RDTERLIKTLKKLRDLGNTVIVVEHDEEVIR- 530 (916)
T ss_dssp TSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCG-------GGHHHHHHHHHHTTTTTCEEEEECCCHHHHH-
T ss_pred cCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCH-------HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-
Confidence 45567899999999999999998655 9999999999997 3445555666666677999999999987654
Q ss_pred cccccchhhhcC------CCCceeeccCceeEE
Q 038045 219 KNLSVDQIKAVY------PEGHTETMEQTYDIY 245 (621)
Q Consensus 219 R~v~~~d~iavl------~eg~Ie~~~~~aDIY 245 (621)
. +|++.++ ..|.+...+++.++.
T Consensus 531 ---~-aD~ii~lgpgag~~~G~iv~~G~~~e~~ 559 (916)
T 3pih_A 531 ---N-ADHIIDIGPGGGTNGGRVVFQGTVDELL 559 (916)
T ss_dssp ---T-CSEEEEEESSSGGGCSEEEEEECHHHHH
T ss_pred ---h-CCEEEEEcCCcccCCCEEEEeechhhhh
Confidence 3 7777788 778888777777763
No 201
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.90 E-value=0.00046 Score=63.96 Aligned_cols=35 Identities=20% Similarity=0.282 Sum_probs=27.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNY 100 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~ 100 (621)
+.+|+|.|++||||||+++.|+..+ +...|..|+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~-~~~~i~~d~~ 37 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY-GYTHLSAGEL 37 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH-CCEEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh-CCeEEeHHHH
Confidence 4589999999999999999999866 3445666554
No 202
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.85 E-value=0.00054 Score=68.03 Aligned_cols=36 Identities=31% Similarity=0.315 Sum_probs=28.9
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECC
Q 038045 63 DGIILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDN 99 (621)
Q Consensus 63 e~~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg 99 (621)
..+.+|.|+|++||||||+++.|+..++ .+.+.+|+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~-~~~~~~~~ 65 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ-GNIVIIDG 65 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTT-TCCEEECG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcC-CCcEEEec
Confidence 3445999999999999999999999883 34566665
No 203
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.84 E-value=0.00053 Score=67.62 Aligned_cols=41 Identities=27% Similarity=0.383 Sum_probs=26.4
Q ss_pred EEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhCC
Q 038045 50 VVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFMP 90 (621)
Q Consensus 50 ~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP 90 (621)
+-|.++++.+..-.+..+|.|.|++||||||+++.|+..++
T Consensus 11 ~~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 11 VDLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp ---------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cCccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 34677777776333334999999999999999999999883
No 204
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.83 E-value=0.0014 Score=63.36 Aligned_cols=140 Identities=17% Similarity=0.223 Sum_probs=65.6
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCcccccccccccCCCCcccccchHHHHHHHHhcCCCccCccccccccC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNYNDSSRVVDGNFDDPRLTDYDTLLENVRDLREGKPVQVPIYDFESSS 146 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~~~~~R~Ig~vfQdp~l~d~~tV~enL~~L~~gk~V~~p~yd~~~~~ 146 (621)
.|.|+||||||||||++.|....|..-...+--.-...| .|=+ +-.-|.+.+-.+.-.....+..++...+. +.
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR-~gE~--~G~dY~Fvs~~eF~~~i~~g~flE~~~~~---g~ 76 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPR-AGEV--NGKDYNFVSVDEFKSMIKNNEFIEWAQFS---GN 76 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCC-TTCC--BTTTBEECCHHHHHHHHHTTCEEEEEEET---TE
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCC-CCCc--CCceeEeecHHHHHHHHHcCCEEEEEEEc---Cc
Confidence 367999999999999999988776421111110000111 0100 00112333334433444555544433322 11
Q ss_pred ccCCce----eecCCccEEEEecceeccccccCC--CC-eeEEecCCchHHHHHHHHHHHHHcCC-CceehHhHHHHH
Q 038045 147 RTGYRT----VEVPSSRIVIIEGIYALSEKLRPL--LD-LRVSVTGGVHFDLVKRVLRDIQRVGQ-EPEEIIQQISET 216 (621)
Q Consensus 147 rsggq~----qrVa~ArVLIvEG~lLLlDEp~s~--LD-lkV~Vd~~~d~~LirRI~Rdl~erG~-Ti~~VtHd~eea 216 (621)
..|... ..+...+.+|++...--...+... ++ ..+|+.++....+.+|+ ..+|. +.+.+..++..+
T Consensus 77 ~YGt~~~~v~~~l~~g~~vil~id~~g~~~~k~~~~~~~~~Ifi~pps~e~L~~RL----~~Rg~e~~e~i~~Rl~~a 150 (186)
T 1ex7_A 77 YYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRL----EGRGTETEESINKRLSAA 150 (186)
T ss_dssp EEEEEHHHHHHHHHHTSEEEEECCHHHHHHHHTCGGGCCEEEEEECSCHHHHHHHH----HHHCCSCHHHHHHHHHHH
T ss_pred eeeeecceeeehhhCCCEEEecCCHHHHHHHHHhcccCceEEEEeCCCHHHHHHHH----HhcCCCCHHHHHHHHHHH
Confidence 111111 112234566666654443333332 23 34777776655555554 35564 444555555444
No 205
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.83 E-value=0.00067 Score=64.13 Aligned_cols=37 Identities=30% Similarity=0.371 Sum_probs=29.5
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 038045 63 DGIILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNY 100 (621)
Q Consensus 63 e~~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~ 100 (621)
.++.+|+|.|++||||||+++.|+..+ +...|..|..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~-g~~~i~~d~~ 49 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY-SFVHLSAGDL 49 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS-SCEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc-CceEEeHHHH
Confidence 346699999999999999999999877 4455666643
No 206
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.83 E-value=0.00058 Score=65.22 Aligned_cols=28 Identities=32% Similarity=0.581 Sum_probs=24.8
Q ss_pred eCCCcceEEEEECCCCCcHHHHHHHHHhhCC
Q 038045 60 QKNDGIILIGLAGPSGAGKTIFTEKILNFMP 90 (621)
Q Consensus 60 ~~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP 90 (621)
.+|. +|+|+|||||||||+++.|+..+|
T Consensus 10 ~~~~---~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIP---PLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCC---CEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCC---EEEEECCCCCCHHHHHHHHHHhCc
Confidence 4555 899999999999999999999885
No 207
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=96.80 E-value=0.00011 Score=86.89 Aligned_cols=92 Identities=8% Similarity=0.037 Sum_probs=74.1
Q ss_pred cccccCccCCceeecCCccEEEEe--cceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhc
Q 038045 141 DFESSSRTGYRTVEVPSSRIVIIE--GIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSA 218 (621)
Q Consensus 141 d~~~~~rsggq~qrVa~ArVLIvE--G~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~ 218 (621)
+.....+|||++|++.+++++..+ |.++++|||+..||+ .+.+.+..+++.+++.|.|++.|+|+.+...
T Consensus 499 dR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp-------~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~- 570 (972)
T 2r6f_A 499 SRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQ-------RDNDRLIATLKSMRDLGNTLIVVEHDEDTML- 570 (972)
T ss_dssp SSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCG-------GGHHHHHHHHHHHHTTTCEEEEECCCHHHHH-
T ss_pred CCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCH-------HHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-
Confidence 455678899999999999999987 589999999999997 4455666666667788999999999997653
Q ss_pred cccccchhhhcC------CCCceeeccCceeE
Q 038045 219 KNLSVDQIKAVY------PEGHTETMEQTYDI 244 (621)
Q Consensus 219 R~v~~~d~iavl------~eg~Ie~~~~~aDI 244 (621)
.+|++.+| +.|.+...+++.++
T Consensus 571 ----~ADrIi~LgpgaG~~gG~iv~~G~~~e~ 598 (972)
T 2r6f_A 571 ----AADYLIDIGPGAGIHGGEVVAAGTPEEV 598 (972)
T ss_dssp ----SCSEEEEECSSSGGGCCSEEEEECTTTT
T ss_pred ----hCCEEEEeCCCccCCCCEEEEecCHHHH
Confidence 37777888 67777777777665
No 208
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.78 E-value=0.00074 Score=61.85 Aligned_cols=34 Identities=21% Similarity=0.289 Sum_probs=26.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHHh-hCCCeeEEEECC
Q 038045 65 IILIGLAGPSGAGKTIFTEKILN-FMPSIAVISMDN 99 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~Lag-LlP~sGvI~lDg 99 (621)
+.+|.|.|++||||||+++.|+. .+ +.-.|..|.
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~-~~~~i~~d~ 36 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNP-GFYNINRDD 36 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHST-TEEEECHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcC-CcEEecHHH
Confidence 35899999999999999999998 33 334444443
No 209
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.78 E-value=0.00017 Score=80.83 Aligned_cols=59 Identities=14% Similarity=0.200 Sum_probs=47.5
Q ss_pred ecceeeeeCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CC-eeEEEECCc
Q 038045 39 QDPLSFEKGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PS-IAVISMDNY 100 (621)
Q Consensus 39 ~~~lsf~~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~-sGvI~lDg~ 100 (621)
++.++--+|...+++++++.+..|+ .++|.||+|+|||||+++|++++ +. .+.+.+++.
T Consensus 37 p~~l~~i~G~~~~l~~l~~~i~~g~---~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~ 97 (604)
T 3k1j_A 37 EKLIDQVIGQEHAVEVIKTAANQKR---HVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPN 97 (604)
T ss_dssp SSHHHHCCSCHHHHHHHHHHHHTTC---CEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECC
T ss_pred ccccceEECchhhHhhccccccCCC---EEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCC
Confidence 3444444677778999999999998 89999999999999999999998 43 367766543
No 210
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.76 E-value=6.7e-05 Score=78.29 Aligned_cols=41 Identities=22% Similarity=0.264 Sum_probs=34.4
Q ss_pred eCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 46 KGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 46 ~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
++...+++++++.+.++. +|+|+|++|+|||||++.|++.+
T Consensus 40 ~~~~~~~~~l~~~~~~~~---~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 40 ALSTQLLDAIMPYCGNTL---RLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp HHHHHHHHHHGGGCSCSE---EEEEEECTTSCHHHHHHHHHHHH
T ss_pred hHHHHHHHhCCcccCCCE---EEEEEcCCCCCHHHHHHHHHHHH
Confidence 344556777777777777 99999999999999999999987
No 211
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.76 E-value=0.0008 Score=71.98 Aligned_cols=30 Identities=20% Similarity=0.429 Sum_probs=26.7
Q ss_pred eEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 57 LLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 57 L~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
+.+.+++ +++|+||||||||||+++|.+++
T Consensus 21 ~~~~~~~---~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 21 VGFGESN---FTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp EECTTCS---EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEecCCC---EEEEECCCCCCHHHHHHHHHhhh
Confidence 3355678 99999999999999999999998
No 212
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.75 E-value=0.00094 Score=64.27 Aligned_cols=40 Identities=25% Similarity=0.246 Sum_probs=31.0
Q ss_pred EEeCCCcceEEEEECCCCCcHHHHHHHHHhhC--CCeeEEEECCc
Q 038045 58 LAQKNDGIILIGLAGPSGAGKTIFTEKILNFM--PSIAVISMDNY 100 (621)
Q Consensus 58 ~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl--P~sGvI~lDg~ 100 (621)
-+++|+ +++|.||+|||||||+..++... .+.++++++..
T Consensus 19 Gl~~G~---~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 19 GIPERN---VVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp SEETTC---EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCCc---EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 378999 99999999999999977765543 45566666643
No 213
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.74 E-value=0.00059 Score=63.35 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHhhC
Q 038045 66 ILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 66 iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
.+|+|+|++||||||+++.|+..+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 389999999999999999999765
No 214
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.73 E-value=0.00059 Score=63.64 Aligned_cols=34 Identities=26% Similarity=0.331 Sum_probs=27.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 038045 66 ILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNY 100 (621)
Q Consensus 66 iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~ 100 (621)
.+|+|.|++||||||+++.|+..+ +...|..|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l-~~~~i~~d~~ 43 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKY-GYTHLSTGDL 43 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH-CCEEEEHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh-CCeEEcHHHH
Confidence 489999999999999999999876 3445655543
No 215
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.70 E-value=0.0005 Score=64.27 Aligned_cols=34 Identities=24% Similarity=0.333 Sum_probs=27.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 038045 66 ILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNY 100 (621)
Q Consensus 66 iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~ 100 (621)
.+|+|+|++||||||+++.|+..+ +.-.|..|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l-~~~~i~~d~~ 46 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKY-GFTHLSTGEL 46 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH-TCEEEEHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh-CCeEEcHHHH
Confidence 489999999999999999999876 3445666654
No 216
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.70 E-value=0.00033 Score=77.78 Aligned_cols=50 Identities=24% Similarity=0.367 Sum_probs=40.8
Q ss_pred CcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCc
Q 038045 47 GFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNY 100 (621)
Q Consensus 47 G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~ 100 (621)
+...+++++++.+ +|. +++|.||+|+|||||+++|++.+ +..+.|.+++.
T Consensus 94 ~~~~~l~~~~~~~-~g~---~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~ 144 (543)
T 3m6a_A 94 LEYLAVQKLTKSL-KGP---ILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGV 144 (543)
T ss_dssp HHHHHHHHHSSSC-CSC---EEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-
T ss_pred HHHHHHHHhcccC-CCC---EEEEECCCCCCHHHHHHHHHHhcCCCeEEEEeccc
Confidence 3445677777777 677 89999999999999999999998 67788877764
No 217
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.70 E-value=0.0012 Score=69.94 Aligned_cols=67 Identities=9% Similarity=0.093 Sum_probs=45.6
Q ss_pred EeCCCcceEEEEECCCCCcHHHHHHHHHhhC-C-CeeEEEECCcccc----cccccccCCCCcccccchHHHHHHH
Q 038045 59 AQKNDGIILIGLAGPSGAGKTIFTEKILNFM-P-SIAVISMDNYNDS----SRVVDGNFDDPRLTDYDTLLENVRD 128 (621)
Q Consensus 59 I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P-~sGvI~lDg~~~~----~R~Ig~vfQdp~l~d~~tV~enL~~ 128 (621)
+++|+ ++.|.||+|||||||+..++... + +..++++|..... .+.+++.+++.......++.+.+..
T Consensus 58 i~~G~---i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~ 130 (356)
T 3hr8_A 58 YPRGR---IVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEI 130 (356)
T ss_dssp EETTE---EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHH
T ss_pred ccCCc---EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHH
Confidence 77888 99999999999999999999876 3 3335677764321 2346666665544444455554443
No 218
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.68 E-value=0.00062 Score=63.09 Aligned_cols=32 Identities=19% Similarity=0.304 Sum_probs=25.6
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFMPSIAVISMDN 99 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg 99 (621)
+|.|+|++||||||+++.|+..+ +...+..|.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l-~~~~~d~d~ 37 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL-DLVFLDSDF 37 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH-TCEEEEHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc-CCCEEcccH
Confidence 68999999999999999999977 334454444
No 219
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.66 E-value=0.00074 Score=62.76 Aligned_cols=33 Identities=27% Similarity=0.274 Sum_probs=26.9
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNY 100 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~ 100 (621)
+|.|+|++||||||+++.|+..+ +...|..|.+
T Consensus 7 ~i~l~G~~GsGKst~a~~La~~l-~~~~i~~d~~ 39 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLAKLT-KRILYDSDKE 39 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-CCCEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCCEEEChHH
Confidence 78999999999999999999876 4445655544
No 220
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.65 E-value=0.00078 Score=62.28 Aligned_cols=34 Identities=18% Similarity=0.201 Sum_probs=27.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECC
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDN 99 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg 99 (621)
+.+|+|+|++||||||+++.|+..+ +.-.|..|.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l-~~~~i~~d~ 39 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF-GWVHLSAGD 39 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH-CCEEEEHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh-CCeEeeHHH
Confidence 4589999999999999999999876 344555554
No 221
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.64 E-value=0.0007 Score=61.98 Aligned_cols=34 Identities=18% Similarity=0.299 Sum_probs=26.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 038045 66 ILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNY 100 (621)
Q Consensus 66 iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~ 100 (621)
.+|+|+|++||||||+++.|+..+ +...|..|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l-g~~~id~d~~ 36 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL-GYEFVDTDIF 36 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH-TCEEEEHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh-CCcEEcccHH
Confidence 379999999999999999999876 3345555543
No 222
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.62 E-value=0.0013 Score=61.89 Aligned_cols=33 Identities=24% Similarity=0.366 Sum_probs=26.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHhhCCCeeEEEEC
Q 038045 66 ILIGLAGPSGAGKTIFTEKILNFMPSIAVISMD 98 (621)
Q Consensus 66 iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lD 98 (621)
.+|+|.|++||||||+++.|+..+++...+.++
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 389999999999999999999977323345443
No 223
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.62 E-value=0.0008 Score=62.56 Aligned_cols=35 Identities=23% Similarity=0.415 Sum_probs=27.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNY 100 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~ 100 (621)
+.+|.|.|++||||||+++.|+..+ +.-.+..|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l-~~~~i~~D~~ 39 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL-RLPLLSKDAF 39 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH-TCCEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc-CCeEecHHHH
Confidence 3489999999999999999999866 3335555544
No 224
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.61 E-value=0.00075 Score=69.43 Aligned_cols=30 Identities=30% Similarity=0.326 Sum_probs=26.1
Q ss_pred CCCcceEEEEECCCCCcHHHHHHHHHhhC-CCee
Q 038045 61 KNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIA 93 (621)
Q Consensus 61 ~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sG 93 (621)
+|+ +++|+|++||||||++..|++.+ +..|
T Consensus 104 ~g~---vi~lvG~~GsGKTTl~~~LA~~l~~~~G 134 (296)
T 2px0_A 104 HSK---YIVLFGSTGAGKTTTLAKLAAISMLEKH 134 (296)
T ss_dssp CSS---EEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCc---EEEEECCCCCCHHHHHHHHHHHHHHhcC
Confidence 456 99999999999999999999988 5444
No 225
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=96.59 E-value=0.00013 Score=86.25 Aligned_cols=92 Identities=7% Similarity=-0.009 Sum_probs=73.1
Q ss_pred cccccCccCCceeecCCccEEEEe--cceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhc
Q 038045 141 DFESSSRTGYRTVEVPSSRIVIIE--GIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSA 218 (621)
Q Consensus 141 d~~~~~rsggq~qrVa~ArVLIvE--G~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~ 218 (621)
+.....+|||++|++.+++++..+ |.++++|||+..||+ .+.+.+..+++.+++.|.|++.|.|+.+...
T Consensus 516 ~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp-------~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~- 587 (993)
T 2ygr_A 516 SRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQ-------RDNRRLIETLTRLRDLGNTLIVVEHDEDTIE- 587 (993)
T ss_dssp TCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCH-------HHHHHHHHHHHHHHHTTCEEEEECCCHHHHH-
T ss_pred CCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCH-------HHHHHHHHHHHHHHHcCCEEEEECCCHHHHH-
Confidence 445678899999999999999988 589999999999997 3455666666667788999999999987643
Q ss_pred cccccchhhhcC------CCCceeeccCceeE
Q 038045 219 KNLSVDQIKAVY------PEGHTETMEQTYDI 244 (621)
Q Consensus 219 R~v~~~d~iavl------~eg~Ie~~~~~aDI 244 (621)
.+|++.+| ..|.+...+++.++
T Consensus 588 ----~ADrIi~Lgp~aG~~gG~iv~~G~~~e~ 615 (993)
T 2ygr_A 588 ----HADWIVDIGPGAGEHGGRIVHSGPYDEL 615 (993)
T ss_dssp ----TCSEEEEECSSSGGGCCSCCEEECHHHH
T ss_pred ----hCCEEEEecCccccCCCEEEEeeCHHHh
Confidence 46777777 56777666666665
No 226
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=96.59 E-value=0.00019 Score=83.93 Aligned_cols=92 Identities=7% Similarity=-0.025 Sum_probs=74.0
Q ss_pred cccccCccCCceeecCCccEEEEec--ceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhc
Q 038045 141 DFESSSRTGYRTVEVPSSRIVIIEG--IYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSA 218 (621)
Q Consensus 141 d~~~~~rsggq~qrVa~ArVLIvEG--~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~ 218 (621)
+.....+|||++|++.+++++..++ .++++|||+..||+ .+.+.+..+.+.+++.|.|++.|.|+++..
T Consensus 374 ~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~-------~~~~~L~~~l~~L~~~G~TVIvVeHdl~~l-- 444 (842)
T 2vf7_A 374 DRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHP-------ADTEALLSALENLKRGGNSLFVVEHDLDVI-- 444 (842)
T ss_dssp TCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCG-------GGHHHHHHHHHHHHTTTCEEEEECCCHHHH--
T ss_pred cCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCH-------HHHHHHHHHHHHHHHcCCEEEEEcCCHHHH--
Confidence 5557788999999999999999987 58999999999996 455666677777778899999999999744
Q ss_pred cccccchhhhcC------CCCceeeccCceeE
Q 038045 219 KNLSVDQIKAVY------PEGHTETMEQTYDI 244 (621)
Q Consensus 219 R~v~~~d~iavl------~eg~Ie~~~~~aDI 244 (621)
..+|++.++ ..|.+...+++.++
T Consensus 445 ---~~aD~ii~lgpgaG~~~G~iv~~g~~~~~ 473 (842)
T 2vf7_A 445 ---RRADWLVDVGPEAGEKGGEILYSGPPEGL 473 (842)
T ss_dssp ---TTCSEEEEECSSSGGGCCSEEEEECGGGG
T ss_pred ---HhCCEEEEeCCCcccCCCEEEEecCHHHH
Confidence 346777788 56777666666665
No 227
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.59 E-value=0.0011 Score=62.00 Aligned_cols=23 Identities=26% Similarity=0.615 Sum_probs=22.2
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLl 89 (621)
+|.|.|++||||||+++.|+..+
T Consensus 15 ~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 15 VVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999987
No 228
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.58 E-value=0.00091 Score=61.83 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=22.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
|.+|.|.|++||||||+++.|+..+
T Consensus 1 M~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 1 MKIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999999876
No 229
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.58 E-value=0.00057 Score=72.42 Aligned_cols=36 Identities=25% Similarity=0.288 Sum_probs=30.1
Q ss_pred EEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 50 VVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 50 ~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
..++++++.+.+| +++|+|||||||||++++|.++.
T Consensus 15 ~~~~~~~~~~~~g----~~~i~G~nG~GKttll~ai~~~~ 50 (359)
T 2o5v_A 15 RNLAPGTLNFPEG----VTGIYGENGAGKTNLLEAAYLAL 50 (359)
T ss_dssp TTCCSEEEECCSE----EEEEECCTTSSHHHHHHHHHHHH
T ss_pred cceeeeEEEEcCC----eEEEECCCCCChhHHHHHHHHhc
Confidence 3457788888654 79999999999999999999865
No 230
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.57 E-value=0.0015 Score=66.54 Aligned_cols=36 Identities=31% Similarity=0.383 Sum_probs=28.1
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECC
Q 038045 63 DGIILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDN 99 (621)
Q Consensus 63 e~~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg 99 (621)
..+.+|.|+|||||||||+++.|+..++ .+.++++.
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~-~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ-GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT-TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC-CCeEEEec
Confidence 3456999999999999999999998774 24455543
No 231
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.55 E-value=0.0013 Score=60.86 Aligned_cols=32 Identities=28% Similarity=0.461 Sum_probs=26.3
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC--CCeeEEEEC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFM--PSIAVISMD 98 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLl--P~sGvI~lD 98 (621)
+|+|.|++||||||+++.|+..+ .+...+..|
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 69999999999999999999866 244556665
No 232
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.53 E-value=0.0012 Score=62.62 Aligned_cols=38 Identities=29% Similarity=0.380 Sum_probs=29.7
Q ss_pred CCcceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 038045 62 NDGIILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNY 100 (621)
Q Consensus 62 Ge~~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~ 100 (621)
+.++.+|+|.|++||||||+++.|+..+ +...|.+|+.
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l-~~~~i~~d~~ 54 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKL-GIPQISTGEL 54 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHH-TCCEEEHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh-CCcEEehhHH
Confidence 3455689999999999999999999876 3345666653
No 233
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.52 E-value=0.0013 Score=60.81 Aligned_cols=24 Identities=17% Similarity=0.343 Sum_probs=22.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHhhC
Q 038045 66 ILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 66 iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
.+|.|.|++||||||+++.|+..+
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 389999999999999999999876
No 234
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.52 E-value=0.00099 Score=64.52 Aligned_cols=35 Identities=17% Similarity=0.384 Sum_probs=28.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNY 100 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~ 100 (621)
+.+|.|.|++||||||+++.|+..+ +.-.|.+|+.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l-~~~~i~~d~~ 41 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF-ELKHLSSGDL 41 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS-SSEEEEHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc-CCeEEechHH
Confidence 3489999999999999999999877 4445666553
No 235
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.51 E-value=0.0008 Score=62.60 Aligned_cols=33 Identities=18% Similarity=0.362 Sum_probs=27.1
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNY 100 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~ 100 (621)
+|+|+|++||||||+++.|+..+ +...|..|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l-g~~~id~D~~ 36 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL-GVGLLDTDVA 36 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH-TCCEEEHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc-CCCEEeCchH
Confidence 68999999999999999999876 3446666654
No 236
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.51 E-value=0.0011 Score=61.89 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLl 89 (621)
+|+|.|++||||||+++.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999976
No 237
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.51 E-value=0.002 Score=61.43 Aligned_cols=34 Identities=26% Similarity=0.391 Sum_probs=27.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHhhC-C---CeeEEEECC
Q 038045 66 ILIGLAGPSGAGKTIFTEKILNFM-P---SIAVISMDN 99 (621)
Q Consensus 66 iIVGI~GpSGSGKSTLlr~LagLl-P---~sGvI~lDg 99 (621)
.+++|+|++|||||||++.|.+.+ + ..|.|..+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~ 44 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCC
Confidence 489999999999999999999876 2 357776654
No 238
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=96.49 E-value=8.1e-05 Score=69.35 Aligned_cols=66 Identities=8% Similarity=-0.021 Sum_probs=50.8
Q ss_pred cccccCccCCceeecCCc------cEEEEecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHH
Q 038045 141 DFESSSRTGYRTVEVPSS------RIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQI 213 (621)
Q Consensus 141 d~~~~~rsggq~qrVa~A------rVLIvEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~ 213 (621)
+.....+|+|+++++..+ ++++.+|.++++|||+..||+. ....+..+.+.+.+.|.+++.++|+.
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~-------~~~~l~~~l~~~~~~~~tiiivsH~~ 123 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEE-------RRRKLITIMERYLKKIPQVILVSHDE 123 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHH-------HHHHHHHHHHHTGGGSSEEEEEESCG
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHH-------HHHHHHHHHHHHHccCCEEEEEEChH
Confidence 344578899999999765 7888899999999999999972 23444445555445588999999996
No 239
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.48 E-value=0.0012 Score=61.66 Aligned_cols=23 Identities=22% Similarity=0.528 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLl 89 (621)
+|+|.|++||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999876
No 240
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.47 E-value=0.001 Score=61.74 Aligned_cols=33 Identities=24% Similarity=0.388 Sum_probs=27.1
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNY 100 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~ 100 (621)
+|.|+|++||||||+++.|+..+ +...+..|+.
T Consensus 13 ~i~i~G~~GsGKst~~~~l~~~~-~~~~~~~d~~ 45 (180)
T 3iij_A 13 NILLTGTPGVGKTTLGKELASKS-GLKYINVGDL 45 (180)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH-CCEEEEHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHHHHh-CCeEEEHHHH
Confidence 78899999999999999999876 4455666654
No 241
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.44 E-value=0.0012 Score=65.24 Aligned_cols=36 Identities=14% Similarity=0.053 Sum_probs=28.4
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 038045 64 GIILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNY 100 (621)
Q Consensus 64 ~~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~ 100 (621)
++.+|+|.||+||||||+++.|+..+ +.-.|+.|+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~-g~~~is~~~~ 63 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH-CYCHLSTGDL 63 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH-CCEEEEHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh-CCeEEecHHH
Confidence 45689999999999999999999866 3445555543
No 242
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.44 E-value=0.0013 Score=60.38 Aligned_cols=33 Identities=21% Similarity=0.309 Sum_probs=26.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECC
Q 038045 66 ILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDN 99 (621)
Q Consensus 66 iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg 99 (621)
-+|+|+|+.||||||+++.|+..+ +.-.|..|.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l-g~~~id~D~ 40 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL-KLEVLDTDM 40 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH-TCCEEEHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh-CCCEEEChH
Confidence 389999999999999999999876 344555554
No 243
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.43 E-value=0.0011 Score=63.78 Aligned_cols=35 Identities=26% Similarity=0.360 Sum_probs=28.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNY 100 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~ 100 (621)
+.+|.|.|++||||||+++.|+..+ +...|..|+.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l-~~~~i~~d~~ 38 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF-HAAHLATGDM 38 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH-CCEEEEHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc-CceEEehhHH
Confidence 3489999999999999999999877 3445666554
No 244
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.43 E-value=0.002 Score=60.34 Aligned_cols=35 Identities=23% Similarity=0.245 Sum_probs=20.8
Q ss_pred EEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhh
Q 038045 50 VVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNF 88 (621)
Q Consensus 50 ~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagL 88 (621)
.+++++++..+... |+|+|++|+|||||++.+.+-
T Consensus 12 ~~l~~~~~~~~~~k----i~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHGK----LLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------CE----EEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCccE----EEEECCCCCCHHHHHHHHhcC
Confidence 46778887765554 899999999999999999973
No 245
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.42 E-value=0.0011 Score=61.14 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=18.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
+.+|.|.|++||||||+++.|+..+
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4589999999999999999999877
No 246
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.40 E-value=0.0016 Score=62.20 Aligned_cols=33 Identities=33% Similarity=0.383 Sum_probs=26.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNY 100 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~ 100 (621)
.|+|+||+||||||+++.|+..+ +.-.|..|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~-~~~~i~~d~~ 34 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY-GIPHISTGDM 34 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS-SCCEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCcEEeHHHH
Confidence 58899999999999999998877 4446666654
No 247
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.40 E-value=0.0014 Score=59.69 Aligned_cols=33 Identities=21% Similarity=0.203 Sum_probs=26.5
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNY 100 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~ 100 (621)
+|+|.|++||||||+++.|+..+ +...|..|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l-~~~~i~~d~~ 34 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL-NIPFYDVDEE 34 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH-TCCEEEHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh-CCCEEECcHH
Confidence 68999999999999999999866 3345655543
No 248
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.39 E-value=0.0014 Score=62.62 Aligned_cols=33 Identities=36% Similarity=0.408 Sum_probs=26.2
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNY 100 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~ 100 (621)
.|+|+||+||||||+++.|+..+ +.-.|..|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~-~~~~i~~d~~ 34 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY-EIPHISTGDM 34 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-CCCEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCcEeeHHHH
Confidence 58899999999999999998766 3445666543
No 249
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.37 E-value=0.002 Score=60.54 Aligned_cols=24 Identities=25% Similarity=0.558 Sum_probs=22.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHhhC
Q 038045 66 ILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 66 iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
.+|+|.|++||||||+++.|+..+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 489999999999999999999977
No 250
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.35 E-value=0.00027 Score=72.87 Aligned_cols=43 Identities=21% Similarity=0.203 Sum_probs=35.8
Q ss_pred eCcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 46 KGFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 46 ~G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
.|...+++.++..++.|+-+- +.+.||+|+||||+++++++.+
T Consensus 28 ~g~~~~~~~L~~~i~~g~~~~-~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 28 YGQNEVITTVRKFVDEGKLPH-LLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp CSCHHHHHHHHHHHHTTCCCC-EEEECSSSSSHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHH
Confidence 455567888888898888222 8999999999999999999987
No 251
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.34 E-value=0.0014 Score=68.70 Aligned_cols=34 Identities=32% Similarity=0.513 Sum_probs=27.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECC
Q 038045 66 ILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDN 99 (621)
Q Consensus 66 iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg 99 (621)
.+|+|+|++|||||||++.|.+.+ +..+.|.+.+
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~ 109 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLA 109 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEe
Confidence 489999999999999999999987 5445554443
No 252
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.33 E-value=0.00073 Score=64.02 Aligned_cols=23 Identities=39% Similarity=0.635 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLl 89 (621)
+|+|.|++||||||+++.|+..+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999987
No 253
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.31 E-value=0.0018 Score=61.25 Aligned_cols=24 Identities=17% Similarity=0.412 Sum_probs=22.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHhhC
Q 038045 66 ILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 66 iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
.+|+|.|++||||||+++.|+..+
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 389999999999999999999865
No 254
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.30 E-value=0.0028 Score=60.47 Aligned_cols=34 Identities=18% Similarity=0.250 Sum_probs=27.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhhC-C---CeeEEEEC
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNFM-P---SIAVISMD 98 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagLl-P---~sGvI~lD 98 (621)
+.+++|+|++|||||||+..|+..+ . ..+.|..|
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~ 41 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHH 41 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeC
Confidence 4589999999999999999999876 2 35666654
No 255
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.28 E-value=0.0019 Score=61.04 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=22.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHhhC
Q 038045 66 ILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 66 iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
.+|+|.|++||||||+++.|+..+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 389999999999999999999865
No 256
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.27 E-value=0.0017 Score=59.93 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLl 89 (621)
+.+|+|||||||||++.+|.-.+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 79999999999999999998655
No 257
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.26 E-value=0.0038 Score=65.40 Aligned_cols=34 Identities=32% Similarity=0.415 Sum_probs=30.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 038045 66 ILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNY 100 (621)
Q Consensus 66 iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~ 100 (621)
.+|.|+||+|||||||++.|+..+ +...|+.|.+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l-~~~iis~Ds~ 39 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL-PCELISVDSA 39 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS-CEEEEEECTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc-CCcEEeccch
Confidence 379999999999999999999988 5678889876
No 258
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.14 E-value=0.0018 Score=71.47 Aligned_cols=44 Identities=20% Similarity=0.293 Sum_probs=34.8
Q ss_pred EEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 038045 51 VIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNY 100 (621)
Q Consensus 51 ~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~ 100 (621)
+++++++.+++| +.|.||+|+|||||+++|++.. ..+.|.+++.
T Consensus 55 ~~~~lg~~ip~G-----vLL~GppGtGKTtLaraIa~~~-~~~~i~i~g~ 98 (499)
T 2dhr_A 55 RFHEMGARIPKG-----VLLVGPPGVGKTHLARAVAGEA-RVPFITASGS 98 (499)
T ss_dssp GTTTTSCCCCSE-----EEEECSSSSSHHHHHHHHHHHT-TCCEEEEEGG
T ss_pred hhhhccCCCCce-----EEEECCCCCCHHHHHHHHHHHh-CCCEEEEehh
Confidence 455666666543 8999999999999999999988 5677877763
No 259
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.12 E-value=0.0022 Score=69.46 Aligned_cols=42 Identities=24% Similarity=0.162 Sum_probs=33.3
Q ss_pred eecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECC
Q 038045 53 RACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDN 99 (621)
Q Consensus 53 k~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg 99 (621)
+++++. ++. +++|+|++||||||++..|++.+ +..+.|.+.+
T Consensus 91 ~~i~l~--~~~---vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd 133 (425)
T 2ffh_A 91 RLPVLK--DRN---LWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (425)
T ss_dssp CCCCCC--SSE---EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ccccCC--CCe---EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEee
Confidence 567776 555 89999999999999999999998 6555555443
No 260
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.11 E-value=0.0029 Score=63.51 Aligned_cols=34 Identities=24% Similarity=0.384 Sum_probs=26.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECC
Q 038045 66 ILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDN 99 (621)
Q Consensus 66 iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg 99 (621)
.+|.|.|++||||||+++.|+..+++.-.|..|.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D~ 36 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRDD 36 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEecccH
Confidence 4899999999999999999998543444555553
No 261
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.11 E-value=0.0033 Score=63.95 Aligned_cols=37 Identities=27% Similarity=0.406 Sum_probs=30.4
Q ss_pred EeCCCcceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECC
Q 038045 59 AQKNDGIILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDN 99 (621)
Q Consensus 59 I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg 99 (621)
+.++. .+.|.||+|+|||||+++|++.. ..+.+.+++
T Consensus 46 ~~~~~---~vLL~Gp~GtGKT~la~ala~~~-~~~~i~v~~ 82 (301)
T 3cf0_A 46 MTPSK---GVLFYGPPGCGKTLLAKAIANEC-QANFISIKG 82 (301)
T ss_dssp CCCCS---EEEEECSSSSSHHHHHHHHHHHT-TCEEEEECH
T ss_pred CCCCc---eEEEECCCCcCHHHHHHHHHHHh-CCCEEEEEh
Confidence 45566 79999999999999999999988 556676664
No 262
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.10 E-value=0.0031 Score=57.45 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=21.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHhhC
Q 038045 66 ILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 66 iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
+.|+|+|++|+|||||++.+.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 579999999999999999999854
No 263
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.08 E-value=0.0043 Score=61.81 Aligned_cols=34 Identities=35% Similarity=0.651 Sum_probs=26.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhhC--CCeeEEEEC
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNFM--PSIAVISMD 98 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagLl--P~sGvI~lD 98 (621)
+.+|.|+|++||||||+++.|+..+ .+...+.++
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~ 39 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLG 39 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEEC
Confidence 4589999999999999999999874 233345444
No 264
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.06 E-value=0.0049 Score=64.63 Aligned_cols=34 Identities=29% Similarity=0.401 Sum_probs=29.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 038045 66 ILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNY 100 (621)
Q Consensus 66 iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~ 100 (621)
.+|.|+||+|||||||+..|+..+ +.-.|+.|.+
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~-~~~iis~Ds~ 37 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL-NGEVISGDSM 37 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT-TEEEEECCGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC-ccceeecCcc
Confidence 489999999999999999999988 4567888875
No 265
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=95.99 E-value=0.0087 Score=64.27 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=23.4
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 64 GIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 64 ~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
.++.|+|+|++|+|||||++.|.|..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCc
Confidence 45789999999999999999999864
No 266
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.98 E-value=0.0039 Score=57.19 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=21.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhh
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNF 88 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagL 88 (621)
.+.|+|+|++|+|||||++.|.+.
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999984
No 267
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.97 E-value=0.0043 Score=60.90 Aligned_cols=32 Identities=22% Similarity=0.476 Sum_probs=25.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFMPSIAVISMDN 99 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg 99 (621)
-+.|.||+|+||||++++|++.. ....+.+++
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~-~~~~~~i~~ 78 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEA-KVPFFTISG 78 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH-TCCEEEECS
T ss_pred eEEEECcCCCCHHHHHHHHHHHc-CCCEEEEeH
Confidence 48899999999999999999987 223466654
No 268
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.96 E-value=0.0023 Score=61.63 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=22.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
+.+|.|.|++||||||+++.|+..+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4479999999999999999999876
No 269
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.94 E-value=0.003 Score=60.87 Aligned_cols=35 Identities=26% Similarity=0.223 Sum_probs=28.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNY 100 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~ 100 (621)
+.+|.|.|++||||||+++.|+..+ +...|..|+.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l-~~~~i~~d~l 39 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY-GLAHLSTGDM 39 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH-CCEEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh-CceEEehhHH
Confidence 4579999999999999999999877 4556666654
No 270
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.89 E-value=0.0067 Score=63.47 Aligned_cols=35 Identities=29% Similarity=0.456 Sum_probs=30.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNY 100 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~ 100 (621)
+.+|.|+||+|||||||+..|+..+ +.-.|+.|..
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~-~~~iis~Ds~ 44 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL-PVELISVDSA 44 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS-CEEEEECCTT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC-CCcEEecccc
Confidence 4589999999999999999999988 4567888875
No 271
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.88 E-value=0.001 Score=62.90 Aligned_cols=34 Identities=21% Similarity=0.272 Sum_probs=27.4
Q ss_pred EEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHh
Q 038045 50 VVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILN 87 (621)
Q Consensus 50 ~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~Lag 87 (621)
.+++++++..++. -|+|+|++|+|||||++.+.+
T Consensus 14 ~~l~~~~~~~~~~----ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 14 SVLQFLGLYKKTG----KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHHHTCTTCCE----EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHhhccCCCc----EEEEECCCCCCHHHHHHHHhc
Confidence 4567777665444 489999999999999999976
No 272
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.87 E-value=0.0018 Score=66.72 Aligned_cols=41 Identities=22% Similarity=0.180 Sum_probs=31.2
Q ss_pred ee-cceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEE
Q 038045 53 RA-CQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISM 97 (621)
Q Consensus 53 k~-IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~l 97 (621)
++ +++..+ +. +++++|++|+||||++..|++.+ +..+.|.+
T Consensus 89 ~~~i~~~~~-~~---vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l 131 (297)
T 1j8m_F 89 EPKVIPDKI-PY---VIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGL 131 (297)
T ss_dssp CCCCSCSSS-SE---EEEEECSSCSSTTHHHHHHHHHHHHTTCCEEE
T ss_pred ccccccCCC-Ce---EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 44 666543 55 99999999999999999999988 44444444
No 273
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.84 E-value=0.0033 Score=61.04 Aligned_cols=33 Identities=27% Similarity=0.313 Sum_probs=26.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNY 100 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~ 100 (621)
+|.|.|++||||||+++.|+..+ +...|..|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l-g~~~i~~dd~ 34 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY-SLAHIESGGI 34 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH-TCEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCeEEchHHH
Confidence 68999999999999999999876 3445666543
No 274
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.79 E-value=0.0042 Score=67.11 Aligned_cols=49 Identities=14% Similarity=0.120 Sum_probs=40.6
Q ss_pred eecceeeeeC-cEEEEe--------------ecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 38 IQDPLSFEKG-FFVVIR--------------ACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 38 v~~~lsf~~G-~~~~Lk--------------~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
..++++|-|. ...+++ |+.+.+.+|+ .++|.||+|+|||||++.|+...
T Consensus 135 ~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQ---r~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 135 LFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQ---RGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp CTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTC---EEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeccccccCCCCccccccCCCCcccccceeeeeeeeecCCc---EEEEecCCCCChhHHHHHHHHHH
Confidence 3455666553 456788 8999999999 89999999999999999999875
No 275
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.78 E-value=0.0075 Score=63.64 Aligned_cols=34 Identities=26% Similarity=0.478 Sum_probs=29.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 038045 66 ILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNY 100 (621)
Q Consensus 66 iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~ 100 (621)
.+|.|+||+|||||||+..|+..+ +.-.|+.|..
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l-~~eiIs~Ds~ 74 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF-PLEVINSDKM 74 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS-CEEEEECCSS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC-CCcEEccccc
Confidence 489999999999999999999988 4567888865
No 276
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.72 E-value=0.0033 Score=60.24 Aligned_cols=33 Identities=30% Similarity=0.265 Sum_probs=26.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNY 100 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~ 100 (621)
.|+|.|++||||||+++.|+..+ +.-.|..|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~-g~~~i~~d~~ 34 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY-GIPQISTGDM 34 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH-CCCEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCeEEeHHHH
Confidence 47999999999999999999866 3446666654
No 277
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.71 E-value=0.0047 Score=60.16 Aligned_cols=36 Identities=22% Similarity=0.320 Sum_probs=28.5
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 038045 64 GIILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNY 100 (621)
Q Consensus 64 ~~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~ 100 (621)
++..|.|.|+.||||||+++.|+..+ +...|..|+.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l-~~~~i~~d~l 50 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF-CVCHLATGDM 50 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH-TCEEEEHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh-CCceecHHHH
Confidence 34589999999999999999999877 4445666543
No 278
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.57 E-value=0.009 Score=58.36 Aligned_cols=27 Identities=19% Similarity=0.345 Sum_probs=24.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhhCCC
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNFMPS 91 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagLlP~ 91 (621)
+.+|+|.|+.||||||+++.|+..+++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~~ 28 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 468999999999999999999998843
No 279
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.56 E-value=0.0063 Score=56.04 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=21.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHhhC
Q 038045 66 ILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 66 iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
..|+|+|++|+|||||++.|.+..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999853
No 280
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.55 E-value=0.0052 Score=59.32 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLl 89 (621)
+.+|+|||||||||++.+|.-.+
T Consensus 25 ~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 89999999999999999998766
No 281
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.52 E-value=0.0059 Score=56.53 Aligned_cols=23 Identities=22% Similarity=0.541 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHhh
Q 038045 66 ILIGLAGPSGAGKTIFTEKILNF 88 (621)
Q Consensus 66 iIVGI~GpSGSGKSTLlr~LagL 88 (621)
+-|+|+|++|+|||||++.+.+.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999985
No 282
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.51 E-value=0.0049 Score=60.90 Aligned_cols=38 Identities=24% Similarity=0.265 Sum_probs=28.6
Q ss_pred CCCcceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECC
Q 038045 61 KNDGIILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDN 99 (621)
Q Consensus 61 ~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg 99 (621)
+-.++.+|.|+||+||||+|.++.|+..+ +.-.|+.++
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~-g~~hIstGd 62 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF-HFNHLSSGD 62 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHH-CCEEECHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHH-CCceEcHHH
Confidence 33456699999999999999999999977 333444433
No 283
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.49 E-value=0.0067 Score=70.51 Aligned_cols=38 Identities=24% Similarity=0.295 Sum_probs=30.8
Q ss_pred EEeCCCcceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECC
Q 038045 58 LAQKNDGIILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDN 99 (621)
Q Consensus 58 ~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg 99 (621)
.+.+++ .|.|.||+|||||||+++|++.+ ....+.+++
T Consensus 234 ~i~~~~---~vLL~Gp~GtGKTtLarala~~l-~~~~i~v~~ 271 (806)
T 1ypw_A 234 GVKPPR---GILLYGPPGTGKTLIARAVANET-GAFFFLING 271 (806)
T ss_dssp CCCCCC---EEEECSCTTSSHHHHHHHHHHTT-TCEEEEEEH
T ss_pred CCCCCC---eEEEECcCCCCHHHHHHHHHHHc-CCcEEEEEc
Confidence 466777 79999999999999999999988 333566664
No 284
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=95.45 E-value=0.0037 Score=65.14 Aligned_cols=33 Identities=18% Similarity=0.171 Sum_probs=25.3
Q ss_pred EEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhh
Q 038045 50 VVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNF 88 (621)
Q Consensus 50 ~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagL 88 (621)
.+|+++++.++ .|+|+|++|||||||++.|.|.
T Consensus 25 ~~l~~i~~~lp------~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 25 SALPTLWDSLP------AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp CCC----CCCC------EEEEECBTTSSHHHHHHHHHTS
T ss_pred cccccccccCC------EEEEECCCCCcHHHHHHHHhCC
Confidence 46777777774 5999999999999999999993
No 285
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.37 E-value=0.0053 Score=62.82 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLl 89 (621)
+|+|+|++|+|||||++.|.+..
T Consensus 10 ~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 10 FIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 79999999999999999999863
No 286
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.34 E-value=0.0097 Score=64.27 Aligned_cols=34 Identities=26% Similarity=0.390 Sum_probs=29.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 038045 66 ILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDNY 100 (621)
Q Consensus 66 iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg~ 100 (621)
.+|+|+||+|||||||+..|+..++ ...|+.|..
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~-~~iis~Ds~ 36 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN-GEVINSDSM 36 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT-EEEEECCTT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC-CeEeecCcc
Confidence 4899999999999999999999884 457888873
No 287
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.26 E-value=0.0091 Score=59.19 Aligned_cols=33 Identities=24% Similarity=0.370 Sum_probs=26.3
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhhCCCeeEE
Q 038045 63 DGIILIGLAGPSGAGKTIFTEKILNFMPSIAVI 95 (621)
Q Consensus 63 e~~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI 95 (621)
.++.+|+|.|+.||||||+++.|+..+.+...|
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 345699999999999999999999988443333
No 288
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=95.16 E-value=0.0018 Score=71.18 Aligned_cols=75 Identities=7% Similarity=-0.052 Sum_probs=57.6
Q ss_pred cCc-cCCceeecCCccEEEEec--ceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHHhcccc
Q 038045 145 SSR-TGYRTVEVPSSRIVIIEG--IYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISETSAKNL 221 (621)
Q Consensus 145 ~~r-sggq~qrVa~ArVLIvEG--~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea~~R~v 221 (621)
..+ |||+++++..+++++.+| .++++|||+..||+. ....+..+.+.+.+ |.+++.|+|+...+.
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~-------~~~~i~~~l~~~~~-~~~vi~itH~~~~~~---- 462 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGA-------AAIAVAEQLSRLAD-TRQVLVVTHLAQIAA---- 462 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTH-------HHHHHHHHHHHHHH-HSEEEEECCCHHHHH----
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHH-------HHHHHHHHHHHHhC-CCEEEEEecCHHHHH----
Confidence 445 999999999999999999 999999999999973 23445555555555 899999999987553
Q ss_pred ccchhhhcCCC
Q 038045 222 SVDQIKAVYPE 232 (621)
Q Consensus 222 ~~~d~iavl~e 232 (621)
.+|++.++..
T Consensus 463 -~~d~~~~~~~ 472 (517)
T 4ad8_A 463 -RAHHHYKVEK 472 (517)
T ss_dssp -HSSEEEEEEC
T ss_pred -hCCEEEEEec
Confidence 3555555543
No 289
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.13 E-value=0.015 Score=52.95 Aligned_cols=28 Identities=29% Similarity=0.177 Sum_probs=23.8
Q ss_pred CCcceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 62 NDGIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 62 Ge~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
.+..+-|+|+|++|+|||||++.+.+-.
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3456789999999999999999998743
No 290
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.12 E-value=0.014 Score=51.64 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=21.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhh
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNF 88 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagL 88 (621)
.+-|+|+|++|+|||||++.+.+-
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 356999999999999999998864
No 291
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.12 E-value=0.012 Score=57.22 Aligned_cols=27 Identities=33% Similarity=0.428 Sum_probs=23.5
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 63 DGIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 63 e~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
...+.|+|+|++|+|||||++.|.|..
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCC
Confidence 345689999999999999999999865
No 292
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.09 E-value=0.01 Score=59.10 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=22.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
.+.|+|+|++|||||||++.|.|..
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3579999999999999999999864
No 293
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.07 E-value=0.019 Score=59.10 Aligned_cols=39 Identities=21% Similarity=0.304 Sum_probs=32.1
Q ss_pred EeCCCcceEEEEECCCCCcHHHHHHHHHhhC--C------CeeEEEECCc
Q 038045 59 AQKNDGIILIGLAGPSGAGKTIFTEKILNFM--P------SIAVISMDNY 100 (621)
Q Consensus 59 I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl--P------~sGvI~lDg~ 100 (621)
+++|+ ++.|.||+|||||||+..++... + +.++++++..
T Consensus 104 l~~G~---i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e 150 (324)
T 2z43_A 104 IETRT---MTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTE 150 (324)
T ss_dssp EETTS---EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred CCCCc---EEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECC
Confidence 78888 99999999999999999998754 4 4566777654
No 294
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.07 E-value=0.013 Score=51.70 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=21.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHhhC
Q 038045 66 ILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 66 iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
+-|+++|++|+|||||++.+.+..
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 468999999999999999998753
No 295
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.05 E-value=0.0086 Score=64.13 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=23.0
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 64 GIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 64 ~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
.+.+|.|+|++||||||+++.|+..+
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 35599999999999999999998865
No 296
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.05 E-value=0.013 Score=54.03 Aligned_cols=26 Identities=27% Similarity=0.195 Sum_probs=22.9
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 64 GIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 64 ~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
+.+.|+|+|++|+|||||++.+.+..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999999865
No 297
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.04 E-value=0.015 Score=51.78 Aligned_cols=26 Identities=15% Similarity=0.212 Sum_probs=22.5
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 64 GIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 64 ~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
+.+-|+|+|++|+|||||++.+.+..
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCC
Confidence 34679999999999999999998753
No 298
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.03 E-value=0.0086 Score=65.06 Aligned_cols=26 Identities=35% Similarity=0.432 Sum_probs=23.8
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 64 GIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 64 ~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
++.+|+++|++||||||++..|+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35699999999999999999999887
No 299
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.03 E-value=0.015 Score=52.39 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=22.9
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhh
Q 038045 63 DGIILIGLAGPSGAGKTIFTEKILNF 88 (621)
Q Consensus 63 e~~iIVGI~GpSGSGKSTLlr~LagL 88 (621)
.+.+-|+|+|++|+|||||++.+.+.
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 44567999999999999999999875
No 300
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.99 E-value=0.016 Score=51.35 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=21.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
.+-|+|+|++|+|||||++.+.+..
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCc
Confidence 3569999999999999999998743
No 301
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.98 E-value=0.021 Score=56.93 Aligned_cols=31 Identities=26% Similarity=0.439 Sum_probs=25.2
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEEC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFMPSIAVISMD 98 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLlP~sGvI~lD 98 (621)
-+.|.||+|+||||++++|++.. ....+.++
T Consensus 56 ~vll~Gp~GtGKT~la~~la~~~-~~~~~~i~ 86 (297)
T 3b9p_A 56 GLLLFGPPGNGKTLLARAVATEC-SATFLNIS 86 (297)
T ss_dssp EEEEESSSSSCHHHHHHHHHHHT-TCEEEEEE
T ss_pred eEEEECcCCCCHHHHHHHHHHHh-CCCeEEee
Confidence 68999999999999999999987 33344444
No 302
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.98 E-value=0.016 Score=51.33 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=21.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHhhC
Q 038045 66 ILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 66 iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
+-|+|+|++|+|||||++.+.+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998854
No 303
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=94.98 E-value=0.014 Score=62.78 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHhh
Q 038045 67 LIGLAGPSGAGKTIFTEKILNF 88 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagL 88 (621)
.+||+|++|+|||||+++|.+.
T Consensus 24 kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 24 KIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CEEEECCSSSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6999999999999999999986
No 304
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.97 E-value=0.0099 Score=57.96 Aligned_cols=32 Identities=25% Similarity=0.430 Sum_probs=25.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFMPSIAVISMDN 99 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg 99 (621)
+|.|+||+||||+|.++.|+..+ +.-.|+..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~-g~~~istGd 33 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK-GFVHISTGD 33 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-CCEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-CCeEEcHHH
Confidence 56799999999999999999987 444555544
No 305
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.93 E-value=0.017 Score=52.60 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=22.5
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 64 GIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 64 ~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
+.+-|+|+|++|+|||||++.|.+..
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCC
Confidence 35679999999999999999998743
No 306
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.93 E-value=0.017 Score=52.16 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=22.5
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 64 GIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 64 ~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
+.+-|+|+|++|+|||||++.+.+..
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCc
Confidence 35679999999999999999998754
No 307
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=94.89 E-value=0.019 Score=60.73 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLl 89 (621)
+|+|+|++|||||||++.|.+..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999865
No 308
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.88 E-value=0.019 Score=54.32 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLl 89 (621)
.+.|.||+|+|||||++.++..+
T Consensus 54 ~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 54 AIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 78999999999999999999876
No 309
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.87 E-value=0.017 Score=51.23 Aligned_cols=24 Identities=21% Similarity=0.301 Sum_probs=21.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhh
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNF 88 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagL 88 (621)
.+-|+|+|++|+|||||++.+.+-
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 356999999999999999999874
No 310
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.84 E-value=0.018 Score=51.95 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=22.5
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 64 GIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 64 ~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
+.+-|+|+|++|+|||||++.+.+-.
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCC
Confidence 45679999999999999999998753
No 311
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.83 E-value=0.018 Score=51.22 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=21.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
.+-|+|+|++|+|||||++.+.+..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3569999999999999999998754
No 312
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.82 E-value=0.018 Score=51.27 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=22.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
.+-|+|+|++|+|||||++.+.+..
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 4579999999999999999998854
No 313
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.80 E-value=0.018 Score=51.36 Aligned_cols=26 Identities=19% Similarity=0.091 Sum_probs=22.5
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 64 GIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 64 ~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
..+-|+|+|++|+|||||++.+.+..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 35679999999999999999998753
No 314
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.80 E-value=0.016 Score=52.31 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=21.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
.+.|+|+|++|+|||||++.+.+..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4579999999999999999998743
No 315
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.79 E-value=0.018 Score=51.27 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=21.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhh
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNF 88 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagL 88 (621)
.+-|+|+|++|+|||||++.+.+-
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 356999999999999999999873
No 316
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=94.78 E-value=0.014 Score=61.25 Aligned_cols=32 Identities=19% Similarity=0.387 Sum_probs=24.7
Q ss_pred eecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhh
Q 038045 53 RACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNF 88 (621)
Q Consensus 53 k~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagL 88 (621)
++..+.+.+ + +..|+|+|||||||++.+|.=.
T Consensus 17 ~~~~i~f~~-g---l~vi~G~NGaGKT~ileAI~~~ 48 (371)
T 3auy_A 17 VNSRIKFEK-G---IVAIIGENGSGKSSIFEAVFFA 48 (371)
T ss_dssp EEEEEECCS-E---EEEEEECTTSSHHHHHHHHHHH
T ss_pred cceEEecCC-C---eEEEECCCCCCHHHHHHHHHHH
Confidence 444444433 3 8999999999999999999853
No 317
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.75 E-value=0.018 Score=51.77 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=21.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
.+-|+|+|++|+|||||++.+.+..
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEEECCCCccHHHHHHHHhcCC
Confidence 4579999999999999999998743
No 318
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.74 E-value=0.022 Score=52.63 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=23.3
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 63 DGIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 63 e~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
++.+-|+|+|++|+|||||++.+.+..
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCC
Confidence 445679999999999999999998853
No 319
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.72 E-value=0.024 Score=59.07 Aligned_cols=39 Identities=18% Similarity=0.192 Sum_probs=31.3
Q ss_pred EeCCCcceEEEEECCCCCcHHHHHHHHHhhC--C------CeeEEEECCc
Q 038045 59 AQKNDGIILIGLAGPSGAGKTIFTEKILNFM--P------SIAVISMDNY 100 (621)
Q Consensus 59 I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl--P------~sGvI~lDg~ 100 (621)
+++|+ ++.|.||+|||||||+..++... | +.++++++..
T Consensus 119 l~~G~---i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E 165 (343)
T 1v5w_A 119 IESMA---ITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTE 165 (343)
T ss_dssp BCSSE---EEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESS
T ss_pred CCCCe---EEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECC
Confidence 67788 99999999999999999998853 3 3456677654
No 320
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.69 E-value=0.02 Score=52.16 Aligned_cols=26 Identities=19% Similarity=0.144 Sum_probs=22.8
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 64 GIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 64 ~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
+.+-|+|+|+.|+|||||++.|.+..
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCc
Confidence 34679999999999999999999863
No 321
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.68 E-value=0.02 Score=52.55 Aligned_cols=28 Identities=18% Similarity=0.262 Sum_probs=23.1
Q ss_pred CCcceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 62 NDGIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 62 Ge~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
|-+.+-|+|+|++|+|||||++.|.+-.
T Consensus 18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 18 GMTEYKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred ccceeEEEEECcCCCCHHHHHHHHHcCC
Confidence 3345679999999999999999998753
No 322
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.65 E-value=0.017 Score=51.96 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=22.5
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhh
Q 038045 63 DGIILIGLAGPSGAGKTIFTEKILNF 88 (621)
Q Consensus 63 e~~iIVGI~GpSGSGKSTLlr~LagL 88 (621)
+..+-|+|+|++|+|||||++.+.+.
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567999999999999999999764
No 323
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.64 E-value=0.017 Score=57.73 Aligned_cols=32 Identities=25% Similarity=0.457 Sum_probs=25.6
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC-CCee-EEEEC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFM-PSIA-VISMD 98 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLl-P~sG-vI~lD 98 (621)
.+.|.||+|+||||++++|++.+ +..+ .+.++
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~ 82 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRID 82 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEE
T ss_pred EEEEECCCCcCHHHHHHHHHHHHcCCCcceEEee
Confidence 79999999999999999999987 4322 44444
No 324
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.63 E-value=0.018 Score=54.56 Aligned_cols=25 Identities=24% Similarity=0.599 Sum_probs=22.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
+.+|+|+|++|+|||||+..|++.+
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998764
No 325
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.62 E-value=0.018 Score=51.89 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLl 89 (621)
.+.|.||+|+||||+++.++..+
T Consensus 45 ~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999876
No 326
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.61 E-value=0.019 Score=51.15 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=21.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
++-|+|+|++|+|||||++.+.+..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 4569999999999999999998754
No 327
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.61 E-value=0.022 Score=50.63 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=21.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhh
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNF 88 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagL 88 (621)
.+-|+|+|++|+|||||++.+.+-
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 457999999999999999999874
No 328
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.60 E-value=0.022 Score=50.87 Aligned_cols=24 Identities=29% Similarity=0.249 Sum_probs=21.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhh
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNF 88 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagL 88 (621)
.+-|+|+|++|+|||||++.+.+-
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999999764
No 329
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=94.58 E-value=0.0047 Score=67.83 Aligned_cols=35 Identities=23% Similarity=0.396 Sum_probs=29.3
Q ss_pred EEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 51 VIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 51 ~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
.++++++.+.+| +.+|+|+||||||||+.+|..++
T Consensus 50 ~~~~~~l~f~~g----~n~i~G~NGaGKS~lleAl~~ll 84 (517)
T 4ad8_A 50 TITQLELELGGG----FCAFTGETGAGKSIIVDALGLLL 84 (517)
T ss_dssp TBSCEEEECCCS----EEEEEESHHHHHHHHTHHHHHHT
T ss_pred ceeeEEEecCCC----eEEEEcCCCCCHHHHHHHHHHHh
Confidence 456777776543 79999999999999999999887
No 330
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.55 E-value=0.015 Score=59.10 Aligned_cols=33 Identities=21% Similarity=0.313 Sum_probs=26.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC-C----CeeEEEECC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFM-P----SIAVISMDN 99 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLl-P----~sGvI~lDg 99 (621)
.+.|.||+|+|||||++.+++.+ + +...+.++.
T Consensus 47 ~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~ 84 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINT 84 (386)
T ss_dssp CEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEC
Confidence 79999999999999999999876 2 445565553
No 331
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.55 E-value=0.018 Score=52.98 Aligned_cols=25 Identities=40% Similarity=0.619 Sum_probs=22.2
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhh
Q 038045 64 GIILIGLAGPSGAGKTIFTEKILNF 88 (621)
Q Consensus 64 ~~iIVGI~GpSGSGKSTLlr~LagL 88 (621)
+.+.|+|+|++|+|||||++.|.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999999874
No 332
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.53 E-value=0.021 Score=51.07 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=20.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHhhC
Q 038045 66 ILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 66 iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
+-|+|+|++|+|||||++.+.+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEEECCCCCCHHHHHHHHHhcc
Confidence 568999999999999999997643
No 333
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.48 E-value=0.025 Score=51.07 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=22.0
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhh
Q 038045 64 GIILIGLAGPSGAGKTIFTEKILNF 88 (621)
Q Consensus 64 ~~iIVGI~GpSGSGKSTLlr~LagL 88 (621)
+.+-|+|+|++|+|||||++.+.+-
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhC
Confidence 3567999999999999999999864
No 334
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.46 E-value=0.021 Score=53.67 Aligned_cols=23 Identities=35% Similarity=0.377 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLl 89 (621)
.+.|.||+|+|||||+++|+..+
T Consensus 56 ~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 56 GLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999876
No 335
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.45 E-value=0.022 Score=51.53 Aligned_cols=23 Identities=30% Similarity=0.273 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLl 89 (621)
.+.|.||+|+||||+++.++..+
T Consensus 45 ~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 45 NPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999876
No 336
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.44 E-value=0.025 Score=57.89 Aligned_cols=32 Identities=22% Similarity=0.394 Sum_probs=26.1
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC-C--CeeEEEEC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFM-P--SIAVISMD 98 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLl-P--~sGvI~lD 98 (621)
.+.|.||+|+|||||++.+++.+ + +...+.++
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN 80 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence 79999999999999999999987 3 23455555
No 337
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.43 E-value=0.029 Score=50.41 Aligned_cols=27 Identities=19% Similarity=0.201 Sum_probs=23.3
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 63 DGIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 63 e~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
+..+-|+|+|+.|+|||||++.+.+..
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCC
Confidence 445679999999999999999998754
No 338
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.43 E-value=0.029 Score=50.70 Aligned_cols=27 Identities=30% Similarity=0.321 Sum_probs=23.3
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 63 DGIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 63 e~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
++.+-|+|+|++|+|||||++.+.+..
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCC
Confidence 445679999999999999999998754
No 339
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.40 E-value=0.032 Score=55.18 Aligned_cols=30 Identities=30% Similarity=0.461 Sum_probs=24.5
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEE
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFMPSIAVISM 97 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLlP~sGvI~l 97 (621)
-+.|.||+|+|||||++.|+..+ +...+.+
T Consensus 53 ~~ll~G~~GtGKT~la~~la~~~-~~~~~~v 82 (285)
T 3h4m_A 53 GILLYGPPGTGKTLLAKAVATET-NATFIRV 82 (285)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHT-TCEEEEE
T ss_pred eEEEECCCCCcHHHHHHHHHHHh-CCCEEEE
Confidence 58999999999999999999987 3334444
No 340
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=94.37 E-value=0.047 Score=56.97 Aligned_cols=38 Identities=13% Similarity=0.089 Sum_probs=31.0
Q ss_pred CcEEEEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhh
Q 038045 47 GFFVVIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNF 88 (621)
Q Consensus 47 G~~~~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagL 88 (621)
.....+++..+.+ .|. -|.|.|+||+||||++..|.+.
T Consensus 130 ~~~~~~H~~~v~~-~g~---~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 130 ARTTSLHGVLVDV-YGV---GVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp CEEEEEESEEEEE-TTE---EEEEEESTTSSHHHHHHHHHHT
T ss_pred ccceeeeEEEEEE-CCE---EEEEEeCCCCCHHHHHHHHHhc
Confidence 3456788877777 555 6999999999999999999873
No 341
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.37 E-value=0.026 Score=51.02 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=21.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhh
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNF 88 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagL 88 (621)
.+-|+|+|++|+|||||++.+.+.
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 457999999999999999999874
No 342
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.33 E-value=0.022 Score=52.06 Aligned_cols=26 Identities=19% Similarity=0.194 Sum_probs=22.3
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 64 GIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 64 ~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
..+.|+|+|++|+|||||++.+.+..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCc
Confidence 34579999999999999999998753
No 343
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.30 E-value=0.024 Score=50.89 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=21.8
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhh
Q 038045 64 GIILIGLAGPSGAGKTIFTEKILNF 88 (621)
Q Consensus 64 ~~iIVGI~GpSGSGKSTLlr~LagL 88 (621)
+.+-|+|+|+.|+|||||++.+.+-
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3467999999999999999999864
No 344
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.27 E-value=0.025 Score=52.67 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=21.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHhhC
Q 038045 66 ILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 66 iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
..+.|.||+|+|||||++.++..+
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 378999999999999999999866
No 345
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.27 E-value=0.017 Score=51.46 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=20.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHhhC
Q 038045 66 ILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 66 iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
+-|+|+|++|+|||||++.+.+..
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEEECCCCCCHHHHHHHHcCcc
Confidence 468999999999999999997644
No 346
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.26 E-value=0.036 Score=57.89 Aligned_cols=36 Identities=25% Similarity=0.446 Sum_probs=27.8
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhhC----CCeeEEEEC
Q 038045 63 DGIILIGLAGPSGAGKTIFTEKILNFM----PSIAVISMD 98 (621)
Q Consensus 63 e~~iIVGI~GpSGSGKSTLlr~LagLl----P~sGvI~lD 98 (621)
.+..+|+|+|+.|+|||||+..|+..+ ...+.|..|
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D 116 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD 116 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence 345689999999999999999998765 234455554
No 347
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.25 E-value=0.03 Score=51.18 Aligned_cols=27 Identities=26% Similarity=0.154 Sum_probs=23.8
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 63 DGIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 63 e~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
+..+-|+|+|++|+|||||++.+.+..
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhc
Confidence 345679999999999999999999876
No 348
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.24 E-value=0.033 Score=51.17 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=23.3
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 63 DGIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 63 e~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
+..+-|+|+|++|+|||||++.+.+..
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCC
Confidence 445679999999999999999998743
No 349
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.23 E-value=0.031 Score=51.46 Aligned_cols=27 Identities=30% Similarity=0.267 Sum_probs=23.3
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 63 DGIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 63 e~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
+..+-|+|+|++|+|||||++.+.+..
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCC
Confidence 345679999999999999999998754
No 350
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.20 E-value=0.027 Score=53.10 Aligned_cols=26 Identities=27% Similarity=0.195 Sum_probs=23.0
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 64 GIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 64 ~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
+.+.|+|+|++|+|||||++.|.+..
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45679999999999999999999865
No 351
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.13 E-value=0.031 Score=51.49 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=22.1
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhh
Q 038045 64 GIILIGLAGPSGAGKTIFTEKILNF 88 (621)
Q Consensus 64 ~~iIVGI~GpSGSGKSTLlr~LagL 88 (621)
..+-|+|+|++|+|||||++.+.+-
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcC
Confidence 4567999999999999999999873
No 352
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.12 E-value=0.027 Score=59.14 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLl 89 (621)
-+.|+|++||||||+++.|....
T Consensus 37 ~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 37 NWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEcCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999876
No 353
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.11 E-value=0.031 Score=54.24 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLl 89 (621)
-+.|.||+|+||||+++.|+..+
T Consensus 41 ~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 41 GALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999976
No 354
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.10 E-value=0.032 Score=50.39 Aligned_cols=26 Identities=23% Similarity=0.201 Sum_probs=22.5
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 64 GIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 64 ~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
..+-|+|+|++|+|||||++.+.+..
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 45679999999999999999998753
No 355
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.10 E-value=0.037 Score=50.36 Aligned_cols=27 Identities=19% Similarity=0.274 Sum_probs=22.9
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 63 DGIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 63 e~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
.+.+-|+|+|++|+|||||++.+.+..
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCC
Confidence 345679999999999999999998743
No 356
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.08 E-value=0.032 Score=51.66 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=21.9
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhh
Q 038045 64 GIILIGLAGPSGAGKTIFTEKILNF 88 (621)
Q Consensus 64 ~~iIVGI~GpSGSGKSTLlr~LagL 88 (621)
+.+-|+|+|++|+|||||++.+.+-
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3567999999999999999999864
No 357
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.08 E-value=0.022 Score=52.01 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=20.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHhh
Q 038045 66 ILIGLAGPSGAGKTIFTEKILNF 88 (621)
Q Consensus 66 iIVGI~GpSGSGKSTLlr~LagL 88 (621)
+-|+|+|++|+|||||++.+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCc
Confidence 45899999999999999999874
No 358
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.07 E-value=0.033 Score=51.75 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=22.7
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 64 GIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 64 ~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
..+-|+|+|++|+|||||++.+.+..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 45679999999999999999998754
No 359
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.06 E-value=0.029 Score=51.10 Aligned_cols=26 Identities=15% Similarity=0.269 Sum_probs=22.5
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 64 GIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 64 ~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
+.+-|+|+|++|+|||||++.+.+..
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCC
Confidence 45679999999999999999998743
No 360
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.04 E-value=0.027 Score=55.30 Aligned_cols=27 Identities=30% Similarity=0.375 Sum_probs=22.3
Q ss_pred CCcceEEEEECCCCCcHHHHHHHHHhh
Q 038045 62 NDGIILIGLAGPSGAGKTIFTEKILNF 88 (621)
Q Consensus 62 Ge~~iIVGI~GpSGSGKSTLlr~LagL 88 (621)
..+.+.|+|+|++|+|||||++.|.+.
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCC
Confidence 344568999999999999999999874
No 361
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.04 E-value=0.022 Score=52.58 Aligned_cols=26 Identities=27% Similarity=0.231 Sum_probs=22.6
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 64 GIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 64 ~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
+.+-|+|+|++|+|||||++.+.+..
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~ 40 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASED 40 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSC
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCC
Confidence 44679999999999999999998753
No 362
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.02 E-value=0.019 Score=64.34 Aligned_cols=38 Identities=16% Similarity=0.071 Sum_probs=29.5
Q ss_pred CCcceEEEEECCCCCcHHHHHHHHHhhCCC---eeEEEECC
Q 038045 62 NDGIILIGLAGPSGAGKTIFTEKILNFMPS---IAVISMDN 99 (621)
Q Consensus 62 Ge~~iIVGI~GpSGSGKSTLlr~LagLlP~---sGvI~lDg 99 (621)
+.++.+|.|+|++||||||+++.|+..+.. ...+.+|+
T Consensus 393 gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~ 433 (573)
T 1m8p_A 393 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLG 433 (573)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEH
T ss_pred cccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECc
Confidence 445679999999999999999999987732 22566664
No 363
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.00 E-value=0.048 Score=53.77 Aligned_cols=30 Identities=23% Similarity=0.262 Sum_probs=24.2
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEEC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFMPSIAVISMD 98 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLlP~sGvI~lD 98 (621)
.|.|+||+|||||||+..|+.... ..|+-|
T Consensus 36 ~ilI~GpsGsGKStLA~~La~~g~--~iIsdD 65 (205)
T 2qmh_A 36 GVLITGDSGVGKSETALELVQRGH--RLIADD 65 (205)
T ss_dssp EEEEECCCTTTTHHHHHHHHTTTC--EEEESS
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC--eEEecc
Confidence 799999999999999999988652 344444
No 364
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.97 E-value=0.035 Score=50.29 Aligned_cols=24 Identities=21% Similarity=0.144 Sum_probs=21.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhh
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNF 88 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagL 88 (621)
.+-|+|+|++|+|||||++.+.+-
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 456999999999999999999864
No 365
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.96 E-value=0.017 Score=52.52 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=21.3
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHh
Q 038045 63 DGIILIGLAGPSGAGKTIFTEKILN 87 (621)
Q Consensus 63 e~~iIVGI~GpSGSGKSTLlr~Lag 87 (621)
.+.+-|+|+|++|+|||||++.+.+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3456899999999999999998764
No 366
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.94 E-value=0.031 Score=53.18 Aligned_cols=25 Identities=28% Similarity=0.680 Sum_probs=21.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
++.|+|+|.+|+|||||+..++...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999988754
No 367
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.94 E-value=0.04 Score=50.95 Aligned_cols=27 Identities=15% Similarity=0.194 Sum_probs=23.1
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 63 DGIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 63 e~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
...+-|+|+|++|+|||||++.+.+..
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCC
Confidence 345679999999999999999998754
No 368
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=93.94 E-value=0.029 Score=54.07 Aligned_cols=24 Identities=21% Similarity=0.463 Sum_probs=22.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHhhC
Q 038045 66 ILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 66 iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
.+|+|.|+.||||||+++.|+..+
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHh
Confidence 489999999999999999999988
No 369
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.92 E-value=0.043 Score=59.81 Aligned_cols=49 Identities=10% Similarity=0.216 Sum_probs=34.2
Q ss_pred eeeeCCCceEEehhhHhhcCceeEEEecccHHH-HHHHHHHhCCCCCccchhHHHHHHHHh
Q 038045 316 HVFCDDRGVCVKIDWLEQLNRQYIQVQGKDRLI-VKNVAEQLGLEGSYVPRTYIEQIQLEK 375 (621)
Q Consensus 316 ~i~~d~~gv~i~v~~le~l~~~~i~i~g~~r~~-V~~~~~~L~l~g~~i~~~y~e~i~~~~ 375 (621)
.++.-|+ +.-.+|..++.- +.++ -++.++++ ..|.|.-.-|++|++-=+
T Consensus 292 ~llg~gd-~~~l~e~~~~~~---------~~~~~~~~~~~k~-~~~~f~l~d~~~q~~~~~ 341 (443)
T 3dm5_A 292 RLLGLGD-IQGLLEKFKELE---------KEVEIKEEDIERF-LRGKFTLKDMYAQLEAMR 341 (443)
T ss_dssp HHTTTTC-HHHHHHHHHHHH---------TTHHHHHHHHHHH-HTTCCCHHHHHHHHHHHH
T ss_pred HHcCCCc-HHHHHHHHHHhh---------hhhHHHHHHHHHH-hhCCcCHHHHHHHHHHHH
Confidence 4577788 877788887752 2332 12377888 588999999999986433
No 370
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.90 E-value=0.029 Score=54.81 Aligned_cols=24 Identities=29% Similarity=0.616 Sum_probs=22.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHhhC
Q 038045 66 ILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 66 iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
.+|.|.|++||||||+++.|+..+
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 389999999999999999999877
No 371
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=93.88 E-value=0.024 Score=57.52 Aligned_cols=34 Identities=29% Similarity=0.458 Sum_probs=26.1
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEEC
Q 038045 64 GIILIGLAGPSGAGKTIFTEKILNFMPSIAVISMD 98 (621)
Q Consensus 64 ~~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lD 98 (621)
.|..+.|.||+|+|||+|++.|+..+ +...+.++
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l-~~~~i~v~ 68 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM-GINPIMMS 68 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH-TCCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh-CCCEEEEe
Confidence 34578899999999999999999987 33334443
No 372
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.87 E-value=0.018 Score=57.61 Aligned_cols=32 Identities=31% Similarity=0.325 Sum_probs=26.2
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFMPSIAVISMDN 99 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg 99 (621)
.+||+|++||||||+++.|+..+ +...|++++
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~-g~~~is~gd 41 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF-GIPQISTGD 41 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH-TCCEECHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh-CCCeeechH
Confidence 58999999999999999999876 444565554
No 373
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.87 E-value=0.038 Score=51.34 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=21.3
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhh
Q 038045 64 GIILIGLAGPSGAGKTIFTEKILNF 88 (621)
Q Consensus 64 ~~iIVGI~GpSGSGKSTLlr~LagL 88 (621)
+.+-|+|+|++|+|||||++.+.+-
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4567999999999999999877653
No 374
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.87 E-value=0.037 Score=51.65 Aligned_cols=28 Identities=25% Similarity=0.296 Sum_probs=22.5
Q ss_pred CCcceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 62 NDGIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 62 Ge~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
.++.+-|+|+|+.|+|||||++.+.+..
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 3456789999999999999999998754
No 375
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.86 E-value=0.035 Score=49.34 Aligned_cols=23 Identities=30% Similarity=0.153 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLl 89 (621)
-|+|+|++|+|||||++.+.+-.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999997643
No 376
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.86 E-value=0.039 Score=50.86 Aligned_cols=26 Identities=31% Similarity=0.245 Sum_probs=22.4
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 64 GIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 64 ~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
+.+-|+|+|++|+|||||++.+.+-.
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCC
Confidence 45679999999999999999998643
No 377
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.85 E-value=0.033 Score=50.57 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=21.3
Q ss_pred cceEEEEECCCCCcHHHHHHHHHh
Q 038045 64 GIILIGLAGPSGAGKTIFTEKILN 87 (621)
Q Consensus 64 ~~iIVGI~GpSGSGKSTLlr~Lag 87 (621)
+.+-|+|+|++|+|||||++.+.+
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 346799999999999999999985
No 378
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=93.84 E-value=0.033 Score=50.96 Aligned_cols=25 Identities=24% Similarity=0.199 Sum_probs=21.9
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhh
Q 038045 64 GIILIGLAGPSGAGKTIFTEKILNF 88 (621)
Q Consensus 64 ~~iIVGI~GpSGSGKSTLlr~LagL 88 (621)
+.+-|+|+|++|+|||||++.+.+-
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4567999999999999999999864
No 379
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=93.80 E-value=0.032 Score=56.39 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=21.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhh
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNF 88 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagL 88 (621)
.+.|+|+|++|+|||||++.|.|.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 357999999999999999999985
No 380
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.80 E-value=0.032 Score=55.25 Aligned_cols=26 Identities=27% Similarity=0.586 Sum_probs=23.3
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 64 GIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 64 ~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
+..+|.|.|++||||||+++.|+..+
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34599999999999999999999877
No 381
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.79 E-value=0.019 Score=61.89 Aligned_cols=36 Identities=28% Similarity=0.266 Sum_probs=31.8
Q ss_pred EEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 51 VIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 51 ~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
.|+.+..-+++|+ ++.|.|++|+|||||+..++...
T Consensus 192 ~LD~~~gGl~~G~---liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 192 ELDRMTSGFQRSD---LIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp HHHHHHSSBCTTC---EEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCC---EEEEECCCCCCHHHHHHHHHHHH
Confidence 4666666689999 99999999999999999999876
No 382
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=93.78 E-value=0.04 Score=50.93 Aligned_cols=29 Identities=17% Similarity=0.131 Sum_probs=23.5
Q ss_pred CCCcceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 61 KNDGIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 61 ~Ge~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
...+.+-|+|+|++|+|||||++.+.+-.
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCC
Confidence 34456789999999999999999998753
No 383
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=93.76 E-value=0.035 Score=51.48 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=22.6
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 64 GIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 64 ~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
+.+-|+|+|++|+|||||++.+.+..
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCC
Confidence 45679999999999999999998743
No 384
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.76 E-value=0.04 Score=50.43 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=22.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
.+-|+|+|+.|+|||||++.+.+..
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 4579999999999999999998753
No 385
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=93.70 E-value=0.042 Score=62.43 Aligned_cols=37 Identities=27% Similarity=0.360 Sum_probs=30.3
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhhCC--CeeEEEECCc
Q 038045 64 GIILIGLAGPSGAGKTIFTEKILNFMP--SIAVISMDNY 100 (621)
Q Consensus 64 ~~iIVGI~GpSGSGKSTLlr~LagLlP--~sGvI~lDg~ 100 (621)
++.+|.|+|.+||||||+++.|+..+. +...+.+|+.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD 89 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 89 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechH
Confidence 456899999999999999999998762 4457778754
No 386
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.69 E-value=0.037 Score=50.84 Aligned_cols=26 Identities=23% Similarity=0.101 Sum_probs=22.4
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 64 GIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 64 ~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
..+-|+|+|++|+|||||++.+.+..
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999998753
No 387
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.68 E-value=0.039 Score=49.87 Aligned_cols=25 Identities=20% Similarity=0.118 Sum_probs=21.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
.+-|+|+|++|+|||||++.+.+-.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 4569999999999999999998743
No 388
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.68 E-value=0.027 Score=56.18 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=22.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHhhC
Q 038045 66 ILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 66 iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
.+|.|.|++||||||+++.|+..+
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 399999999999999999999877
No 389
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=93.59 E-value=0.04 Score=54.42 Aligned_cols=27 Identities=30% Similarity=0.357 Sum_probs=23.1
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 63 DGIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 63 e~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
...+-|+|+|.+|+|||||++.|.+.-
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCC
Confidence 345689999999999999999998854
No 390
>2aca_A Putative adenylate cyclase; NESG, VPR19, Q87NV8, structural genomics, PSI, protein structure initiative; 2.25A {Vibrio parahaemolyticus} SCOP: d.63.1.2
Probab=93.57 E-value=0.083 Score=50.67 Aligned_cols=121 Identities=16% Similarity=0.240 Sum_probs=79.5
Q ss_pred ceeEEecCCCCCcccccceeEEeecC--CeeEEEeeeeecCCCeEeccceeeEEEee---eeccee-ccCceEEEEEeec
Q 038045 241 TYDIYLLPPGEDPESCQSYLRMRNKD--GKYSLMFEEWVTDIPFVISPRITFEVSVR---LLGGLM-ALGYTIATILKRS 314 (621)
Q Consensus 241 ~aDIYi~P~~~~~e~~~d~Irvr~~~--g~~~L~f~e~i~d~~fIi~P~~~FeV~~~---~LgGll-~lgy~i~~~~~~~ 314 (621)
..|+|.-.|+........++|+|..+ +...+.+-....++ ..++.+. .+..++ .+||..+..++-.
T Consensus 43 q~d~YfDtp~~~L~~~~~aLRiR~~~~~~~~~~t~Kgp~~~~--------~~e~~v~d~~~~~~~L~~lgl~~~~~~~k~ 114 (189)
T 2aca_A 43 ESDWFYDTPQRTLTQQGKSLVLREIQPAGIKLWIVKGPEADR--------CEATNITKLDSAQSMLENMGYEVIQCSKKI 114 (189)
T ss_dssp EEEEEEECTTCHHHHTTCEEEEEEEETTTEEEEEEECSSTTB--------EEEEEBSCHHHHHHHHHHTTCEEEEEEEEE
T ss_pred EEEEEEeCCCcchhhCCeEEEEEEecCCCcEEEEEcCCCcCc--------eEEEecCCHHHHHHHHHHcCCcEEEEEEEE
Confidence 46777766665554556688888754 33444332221111 1122222 122223 3899999888888
Q ss_pred ceeeeCCCceEEehhhHhhcCceeEEEe--cc-------cHHHHHHHHHHhCCCCC-ccchhHHHHH
Q 038045 315 SHVFCDDRGVCVKIDWLEQLNRQYIQVQ--GK-------DRLIVKNVAEQLGLEGS-YVPRTYIEQI 371 (621)
Q Consensus 315 ~~i~~d~~gv~i~v~~le~l~~~~i~i~--g~-------~r~~V~~~~~~L~l~g~-~i~~~y~e~i 371 (621)
..+|.-+. +.+.+|+++.+| +|+=|- -+ -+..+.+++.+|||+.. -+++||+|++
T Consensus 115 R~~~~~~~-~~v~lD~~~~lg-~f~EiE~e~~~~~~~~~~~~~~~~l~~~lgi~~~~~~~~sY~~ll 179 (189)
T 2aca_A 115 RSIFFVGE-FHITLDFLDGFG-HFAEFAIMTDDETALARYRERLVALAQQFHLSEADREHRSYKEIL 179 (189)
T ss_dssp EEEEEETT-EEEEEEEETTTE-EEEEEEEEESCSGGGTTHHHHHHHHHHHTTCCGGGBCCSCTTTSS
T ss_pred EEEEEECC-EEEEEEcccCCe-eEEEEEEEcCCccchHHHHHHHHHHHHHcCcCccccchhhHHHHH
Confidence 88888777 999999999887 785554 21 26789999999999865 7899999764
No 391
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.57 E-value=0.04 Score=51.51 Aligned_cols=26 Identities=15% Similarity=0.106 Sum_probs=22.6
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 64 GIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 64 ~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
+.+-|+|+|++|+|||||++.+.+..
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 34579999999999999999999854
No 392
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.53 E-value=0.046 Score=50.52 Aligned_cols=25 Identities=28% Similarity=0.266 Sum_probs=21.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
.+-|+|+|+.|+|||||++.+.+-.
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCC
Confidence 4579999999999999999998743
No 393
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=93.52 E-value=0.039 Score=51.26 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=21.8
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhh
Q 038045 63 DGIILIGLAGPSGAGKTIFTEKILNF 88 (621)
Q Consensus 63 e~~iIVGI~GpSGSGKSTLlr~LagL 88 (621)
+..+-|+|+|++|+|||||++.+.+.
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC-
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567999999999999999999764
No 394
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.51 E-value=0.051 Score=52.03 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=22.7
Q ss_pred EeCCCcceEEEEECCCCCcHHHHHHHHH
Q 038045 59 AQKNDGIILIGLAGPSGAGKTIFTEKIL 86 (621)
Q Consensus 59 I~~Ge~~iIVGI~GpSGSGKSTLlr~La 86 (621)
+++|+ ++.|.|++|+|||||+-.++
T Consensus 27 l~~G~---l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 27 FPEGT---TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTC---EEEEECCTTSSHHHHHHHHH
T ss_pred CCCCe---EEEEEeCCCCCHHHHHHHHH
Confidence 78999 99999999999999987765
No 395
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=93.50 E-value=0.054 Score=55.72 Aligned_cols=33 Identities=24% Similarity=0.370 Sum_probs=26.2
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFMPSIAVISMDN 99 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg 99 (621)
-+.|.||+|+|||+|++.++..+.....+.+++
T Consensus 47 ~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~ 79 (322)
T 1xwi_A 47 GILLFGPPGTGKSYLAKAVATEANNSTFFSISS 79 (322)
T ss_dssp EEEEESSSSSCHHHHHHHHHHHTTSCEEEEEEC
T ss_pred eEEEECCCCccHHHHHHHHHHHcCCCcEEEEEh
Confidence 588999999999999999999773344555543
No 396
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=93.49 E-value=0.044 Score=50.95 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=21.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
.+-|+|+|++|+|||||++.+.+..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999998743
No 397
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.48 E-value=0.037 Score=50.91 Aligned_cols=27 Identities=15% Similarity=0.239 Sum_probs=22.4
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 63 DGIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 63 e~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
....-|+|+|++|+|||||++.+.+..
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 345679999999999999999988743
No 398
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.47 E-value=0.041 Score=50.60 Aligned_cols=25 Identities=20% Similarity=0.068 Sum_probs=21.9
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhh
Q 038045 64 GIILIGLAGPSGAGKTIFTEKILNF 88 (621)
Q Consensus 64 ~~iIVGI~GpSGSGKSTLlr~LagL 88 (621)
+.+-|+|+|++|+|||||++.+.+-
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3467999999999999999999863
No 399
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.45 E-value=0.05 Score=50.52 Aligned_cols=25 Identities=20% Similarity=0.422 Sum_probs=22.1
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhh
Q 038045 64 GIILIGLAGPSGAGKTIFTEKILNF 88 (621)
Q Consensus 64 ~~iIVGI~GpSGSGKSTLlr~LagL 88 (621)
+.+-|+|+|++|+|||||++.+.+-
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3467999999999999999999875
No 400
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=93.42 E-value=0.038 Score=56.13 Aligned_cols=23 Identities=30% Similarity=0.239 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLl 89 (621)
.+.|.||+|+|||||++.|++.+
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 58899999999999999999876
No 401
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=93.41 E-value=0.031 Score=52.51 Aligned_cols=26 Identities=35% Similarity=0.556 Sum_probs=21.5
Q ss_pred CCcceEEEEECCCCCcHHHHHHHHHh
Q 038045 62 NDGIILIGLAGPSGAGKTIFTEKILN 87 (621)
Q Consensus 62 Ge~~iIVGI~GpSGSGKSTLlr~Lag 87 (621)
....+-|+|+|++|+|||||++.+.+
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHh
Confidence 34457899999999999999999865
No 402
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.41 E-value=0.036 Score=50.83 Aligned_cols=26 Identities=19% Similarity=0.040 Sum_probs=22.2
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 64 GIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 64 ~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
+.+-|+|+|++|+|||||++.+.+-.
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTS
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCC
Confidence 45679999999999999999998743
No 403
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=93.39 E-value=0.043 Score=50.68 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLl 89 (621)
.+.|.||+|+||||+++.++..+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999998865
No 404
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.39 E-value=0.044 Score=49.42 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLl 89 (621)
-|.|.||+|+|||++++.|+...
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSS
T ss_pred CEEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999999999875
No 405
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.38 E-value=0.05 Score=50.75 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=21.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhh
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNF 88 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagL 88 (621)
.+-|+|+|++|+|||||++.+.+-
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999999874
No 406
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.38 E-value=0.048 Score=52.79 Aligned_cols=33 Identities=15% Similarity=0.217 Sum_probs=24.6
Q ss_pred EEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHh
Q 038045 51 VIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILN 87 (621)
Q Consensus 51 ~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~Lag 87 (621)
.+++.-+.+ .|. -|.|.|+||+||||++..|..
T Consensus 6 ~lHas~v~v-~G~---gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 6 TWHANFLVI-DKM---GVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEESEEEEE-TTE---EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEEE-CCE---EEEEEcCCCCCHHHHHHHHHH
Confidence 344444444 344 599999999999999998876
No 407
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=93.36 E-value=0.032 Score=58.10 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=22.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
.+.++|+|++|+|||||++.|.+..
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999998865
No 408
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.36 E-value=0.052 Score=50.30 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=21.9
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhh
Q 038045 63 DGIILIGLAGPSGAGKTIFTEKILNF 88 (621)
Q Consensus 63 e~~iIVGI~GpSGSGKSTLlr~LagL 88 (621)
.+.+-|+|+|++|+|||||++.+.+-
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhC
Confidence 34567999999999999999988864
No 409
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=93.34 E-value=0.053 Score=51.07 Aligned_cols=27 Identities=33% Similarity=0.363 Sum_probs=23.2
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 63 DGIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 63 e~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
++.+-|+|+|++|+|||||++.+.+..
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSC
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCC
Confidence 445679999999999999999998754
No 410
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=93.33 E-value=0.059 Score=56.83 Aligned_cols=39 Identities=18% Similarity=0.304 Sum_probs=31.1
Q ss_pred EeCCCcceEEEEECCCCCcHHHHHHHHHhhC--CCeeEEEECCc
Q 038045 59 AQKNDGIILIGLAGPSGAGKTIFTEKILNFM--PSIAVISMDNY 100 (621)
Q Consensus 59 I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl--P~sGvI~lDg~ 100 (621)
+++|. ++.|.|++|+|||||+..++... .+..++++|..
T Consensus 60 l~~G~---ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E 100 (356)
T 1u94_A 60 LPMGR---IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 100 (356)
T ss_dssp EETTS---EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ccCCe---EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 77888 99999999999999999888754 34456666653
No 411
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=93.33 E-value=0.059 Score=57.22 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHhh
Q 038045 67 LIGLAGPSGAGKTIFTEKILNF 88 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagL 88 (621)
.|||+|.+|+|||||++.|.+.
T Consensus 4 kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 4 KCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6999999999999999999983
No 412
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.33 E-value=0.046 Score=51.36 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=21.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
.+.|+|+|++|+|||||++.+.+-.
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4579999999999999999998754
No 413
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.31 E-value=0.046 Score=50.52 Aligned_cols=26 Identities=23% Similarity=0.212 Sum_probs=22.8
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 64 GIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 64 ~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
..+-|+|+|++|+|||||++.+.+..
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCC
Confidence 34579999999999999999999865
No 414
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.30 E-value=0.042 Score=49.76 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=21.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhh
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNF 88 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagL 88 (621)
.+-|+|+|++|+|||||++.+.+-
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456999999999999999999874
No 415
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.28 E-value=0.056 Score=56.02 Aligned_cols=31 Identities=32% Similarity=0.617 Sum_probs=24.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEEC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFMPSIAVISMD 98 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLlP~sGvI~lD 98 (621)
-+.|.||+|+||||+++.|+..+ +.-.+.++
T Consensus 53 ~vll~GppGtGKT~la~~ia~~~-~~~~~~~~ 83 (363)
T 3hws_A 53 NILLIGPTGSGKTLLAETLARLL-DVPFTMAD 83 (363)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT-TCCEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHc-CCCEEEec
Confidence 48899999999999999999987 33344443
No 416
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.28 E-value=0.052 Score=51.48 Aligned_cols=27 Identities=30% Similarity=0.407 Sum_probs=22.9
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 63 DGIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 63 e~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
++.+-|+|+|++|+|||||++.+.+..
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCC
Confidence 445679999999999999999988643
No 417
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=93.25 E-value=0.047 Score=50.98 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=22.9
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 63 DGIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 63 e~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
+..+-|+|+|++|+|||||++.+.+..
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCC
Confidence 345679999999999999999998743
No 418
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=93.23 E-value=0.046 Score=52.45 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=22.7
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhh
Q 038045 63 DGIILIGLAGPSGAGKTIFTEKILNF 88 (621)
Q Consensus 63 e~~iIVGI~GpSGSGKSTLlr~LagL 88 (621)
.+.+.|+|+|++|+|||||++.+.+.
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34568999999999999999999874
No 419
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=93.18 E-value=0.053 Score=54.35 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=22.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
+.+|||+|+.||||||+++.|...+
T Consensus 1 m~~i~ltG~~~sGK~tv~~~l~~~~ 25 (241)
T 1dek_A 1 MKLIFLSGVKRSGKDTTADFIMSNY 25 (241)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999999865
No 420
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=93.18 E-value=0.026 Score=53.28 Aligned_cols=25 Identities=32% Similarity=0.248 Sum_probs=22.0
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhh
Q 038045 64 GIILIGLAGPSGAGKTIFTEKILNF 88 (621)
Q Consensus 64 ~~iIVGI~GpSGSGKSTLlr~LagL 88 (621)
..+.|+|+|++|+|||||++.|.+.
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999875
No 421
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.17 E-value=0.036 Score=54.92 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLl 89 (621)
+|.|.|++||||||+++.|+..+
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp EEEEECCC---CHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999877
No 422
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=93.17 E-value=0.046 Score=54.93 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=22.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
++.|+|+|.+|||||||++.|.|..
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC
Confidence 4679999999999999999998853
No 423
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=93.12 E-value=0.041 Score=54.92 Aligned_cols=24 Identities=25% Similarity=0.214 Sum_probs=21.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHhhC
Q 038045 66 ILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 66 iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
..|+|+|.+|||||||++.|.|..
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Confidence 368999999999999999999853
No 424
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=93.10 E-value=0.034 Score=51.27 Aligned_cols=25 Identities=20% Similarity=0.174 Sum_probs=21.4
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhh
Q 038045 64 GIILIGLAGPSGAGKTIFTEKILNF 88 (621)
Q Consensus 64 ~~iIVGI~GpSGSGKSTLlr~LagL 88 (621)
+.+-|+|+|++|+|||||++.+.+.
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3467999999999999999998764
No 425
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=93.08 E-value=0.046 Score=51.23 Aligned_cols=26 Identities=19% Similarity=0.367 Sum_probs=22.0
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhh
Q 038045 63 DGIILIGLAGPSGAGKTIFTEKILNF 88 (621)
Q Consensus 63 e~~iIVGI~GpSGSGKSTLlr~LagL 88 (621)
+..+-|+|+|++|+|||||++.+.+.
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhC
Confidence 34567999999999999999999864
No 426
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=93.08 E-value=0.053 Score=54.12 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=22.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
.+.|+|+|++|+|||||++.|.|..
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC
Confidence 4579999999999999999998853
No 427
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.06 E-value=0.043 Score=51.15 Aligned_cols=29 Identities=21% Similarity=0.179 Sum_probs=22.6
Q ss_pred CCCcceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 61 KNDGIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 61 ~Ge~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
++++.+-|.|+|.+|+|||||++.+.+.+
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhcC
Confidence 44556789999999999999999988855
No 428
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=93.06 E-value=0.054 Score=53.71 Aligned_cols=31 Identities=26% Similarity=0.516 Sum_probs=24.5
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEEC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFMPSIAVISMD 98 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLlP~sGvI~lD 98 (621)
-+.|.||+|+||||+++.++..+ +...+.++
T Consensus 52 ~vll~G~~GtGKT~la~~la~~l-~~~~~~i~ 82 (310)
T 1ofh_A 52 NILMIGPTGVGKTEIARRLAKLA-NAPFIKVE 82 (310)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH-TCCEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHh-CCCEEEEc
Confidence 47899999999999999999987 23344444
No 429
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=93.01 E-value=0.064 Score=50.19 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=21.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhh
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNF 88 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagL 88 (621)
.+-|+|+|.+|+|||||++.+.+.
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999999874
No 430
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=93.00 E-value=0.041 Score=53.54 Aligned_cols=58 Identities=17% Similarity=0.147 Sum_probs=36.0
Q ss_pred EeCCCcceEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcccccccccccCCCCcccccchHHHHHHH
Q 038045 59 AQKNDGIILIGLAGPSGAGKTIFTEKILNFM-PSIAVISMDNYNDSSRVVDGNFDDPRLTDYDTLLENVRD 128 (621)
Q Consensus 59 I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P~sGvI~lDg~~~~~R~Ig~vfQdp~l~d~~tV~enL~~ 128 (621)
+..|+ .+.|.||+||||||++..+.... ...+ .....+.+++.|.......+.+++..
T Consensus 73 i~~g~---~~~i~g~TGsGKTt~~~~~~~~~~~~~~---------~~~~~~~l~~~p~~~la~q~~~~~~~ 131 (235)
T 3llm_A 73 ISQNS---VVIIRGATGCGKTTQVPQFILDDFIQND---------RAAECNIVVTQPRRISAVSVAERVAF 131 (235)
T ss_dssp HHHCS---EEEEECCTTSSHHHHHHHHHHHHHHHTT---------CGGGCEEEEEESSHHHHHHHHHHHHH
T ss_pred HhcCC---EEEEEeCCCCCcHHhHHHHHhcchhhcC---------CCCceEEEEeccchHHHHHHHHHHHH
Confidence 44677 89999999999999887654321 1000 01234456666665555566666654
No 431
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=92.95 E-value=0.057 Score=50.10 Aligned_cols=25 Identities=20% Similarity=0.112 Sum_probs=20.9
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhh
Q 038045 64 GIILIGLAGPSGAGKTIFTEKILNF 88 (621)
Q Consensus 64 ~~iIVGI~GpSGSGKSTLlr~LagL 88 (621)
+.+-|+|+|++|+|||||++.+.+-
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457999999999999999998864
No 432
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=92.92 E-value=0.027 Score=55.32 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=20.4
Q ss_pred EEEECCCCCcHHHHHHHHHhhC
Q 038045 68 IGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 68 VGI~GpSGSGKSTLlr~LagLl 89 (621)
+.|.||+|+|||||+++|+...
T Consensus 47 vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 7799999999999999999875
No 433
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=92.91 E-value=0.069 Score=52.52 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=22.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFMP 90 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLlP 90 (621)
+|.|.|++||||||+++.|+..+.
T Consensus 7 ~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 7 LILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 899999999999999999999883
No 434
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.91 E-value=0.049 Score=53.31 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=22.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLl 89 (621)
+|.|.|++||||||+++.|+..+
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999887
No 435
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=92.90 E-value=0.045 Score=54.66 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLl 89 (621)
-+.|.||+|+||||+++.++..+
T Consensus 69 ~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998876
No 436
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=92.85 E-value=0.042 Score=58.31 Aligned_cols=23 Identities=17% Similarity=0.434 Sum_probs=21.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHhh
Q 038045 66 ILIGLAGPSGAGKTIFTEKILNF 88 (621)
Q Consensus 66 iIVGI~GpSGSGKSTLlr~LagL 88 (621)
+.|||+|++|+|||||++.|.+.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999985
No 437
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=92.84 E-value=0.039 Score=62.75 Aligned_cols=35 Identities=26% Similarity=0.309 Sum_probs=27.2
Q ss_pred EEeCCCcceEEEEECCCCCcHHHHHHHHHhhC-C--CeeEE
Q 038045 58 LAQKNDGIILIGLAGPSGAGKTIFTEKILNFM-P--SIAVI 95 (621)
Q Consensus 58 ~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl-P--~sGvI 95 (621)
.++++. .|+|+|++|+|||||++.|.+.. + ..|.|
T Consensus 5 ~~~~~~---~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V 42 (665)
T 2dy1_A 5 GGAMIR---TVALVGHAGSGKTTLTEALLYKTGAKERRGRV 42 (665)
T ss_dssp -CCCEE---EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG
T ss_pred ccCCCc---EEEEECCCCChHHHHHHHHHHhcCCCCcccee
Confidence 344555 89999999999999999999765 2 45555
No 438
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.83 E-value=0.06 Score=50.63 Aligned_cols=25 Identities=16% Similarity=0.040 Sum_probs=21.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
.+-|+|+|++|+|||||++.+.+-.
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCC
Confidence 4569999999999999999998854
No 439
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=92.80 E-value=0.039 Score=57.98 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLl 89 (621)
-|+|+|++|+|||||++.|.+..
T Consensus 39 ~I~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 39 TLMVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp CEEECCCTTSCHHHHHHHHTTCC
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 36999999999999999987754
No 440
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=92.79 E-value=0.055 Score=51.36 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=21.7
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhh
Q 038045 64 GIILIGLAGPSGAGKTIFTEKILNF 88 (621)
Q Consensus 64 ~~iIVGI~GpSGSGKSTLlr~LagL 88 (621)
+.+-|+|+|++|+|||||++.+.+-
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC
Confidence 4567999999999999999999863
No 441
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=92.77 E-value=0.041 Score=50.07 Aligned_cols=25 Identities=28% Similarity=0.244 Sum_probs=11.1
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhh
Q 038045 64 GIILIGLAGPSGAGKTIFTEKILNF 88 (621)
Q Consensus 64 ~~iIVGI~GpSGSGKSTLlr~LagL 88 (621)
..+-|+|+|++|+|||||++.+.+-
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEEECCCCC------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3467999999999999999998764
No 442
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.75 E-value=0.063 Score=49.48 Aligned_cols=25 Identities=20% Similarity=0.143 Sum_probs=22.0
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhh
Q 038045 64 GIILIGLAGPSGAGKTIFTEKILNF 88 (621)
Q Consensus 64 ~~iIVGI~GpSGSGKSTLlr~LagL 88 (621)
+.+-|+|+|++|+|||||++.+.+-
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999875
No 443
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=92.75 E-value=0.051 Score=53.60 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=23.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
..+|+|.|+.||||||+++.|+..+
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~l 38 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEEL 38 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHc
Confidence 3589999999999999999999976
No 444
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=92.73 E-value=0.074 Score=53.98 Aligned_cols=31 Identities=32% Similarity=0.412 Sum_probs=24.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEEC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFMPSIAVISMD 98 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLlP~sGvI~lD 98 (621)
.+.|.||+|+||||+++.|+... +...+.++
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~~-~~~~~~~~ 87 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYEM-SANIKTTA 87 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHT-TCCEEEEE
T ss_pred eEEEECcCCCCHHHHHHHHHHHh-CCCeEEec
Confidence 58999999999999999999887 22344444
No 445
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=92.72 E-value=0.051 Score=60.26 Aligned_cols=31 Identities=16% Similarity=0.190 Sum_probs=25.9
Q ss_pred ecceEEeCCCcceEEEEECCCCCcHHHHHHHHHh
Q 038045 54 ACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILN 87 (621)
Q Consensus 54 ~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~Lag 87 (621)
.+.+.+.++. .+.|+|++||||||+++.|..
T Consensus 159 pv~ldL~~~p---HlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 159 PVVADLAKMP---HLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp EEEEEGGGSC---SEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcccCc---eEEEECCCCCCHHHHHHHHHH
Confidence 3556677776 799999999999999999875
No 446
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=92.69 E-value=0.068 Score=52.82 Aligned_cols=25 Identities=32% Similarity=0.488 Sum_probs=22.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
+.-+.|.||+|+||||+++.|+...
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3478999999999999999999875
No 447
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=92.69 E-value=0.07 Score=50.11 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=22.8
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 63 DGIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 63 e~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
+..+-|+|+|++|+|||||++.+.+..
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCC
Confidence 345679999999999999999998743
No 448
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=92.67 E-value=0.068 Score=54.64 Aligned_cols=25 Identities=16% Similarity=0.384 Sum_probs=22.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
+-+|+|+|.+|+|||||++.|.|.-
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3489999999999999999999853
No 449
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=92.66 E-value=0.056 Score=52.03 Aligned_cols=29 Identities=21% Similarity=0.313 Sum_probs=22.2
Q ss_pred EEEECCCCCcHHHHHHHHHhhCCCeeEEEEC
Q 038045 68 IGLAGPSGAGKTIFTEKILNFMPSIAVISMD 98 (621)
Q Consensus 68 VGI~GpSGSGKSTLlr~LagLlP~sGvI~lD 98 (621)
+.|+|++||||||++..++.. +...++++
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~--~~~~~yia 30 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD--APQVLYIA 30 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS--CSSEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHhc--CCCeEEEe
Confidence 689999999999999998854 22345544
No 450
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=92.65 E-value=0.065 Score=50.90 Aligned_cols=26 Identities=23% Similarity=0.101 Sum_probs=22.7
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 64 GIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 64 ~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
..+-|+|+|++|+|||||++.+.+..
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 45679999999999999999998853
No 451
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.64 E-value=0.058 Score=54.58 Aligned_cols=38 Identities=16% Similarity=0.164 Sum_probs=27.8
Q ss_pred EEeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 51 VIRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 51 ~Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
+++.+...+..+..+ .+.|.||+|+||||+++.+++.+
T Consensus 45 ~~~~l~~~l~~~~~~-~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 45 AVTVLKKTLKSANLP-HMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp THHHHHHHTTCTTCC-CEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCC-EEEEECCCCCCHHHHHHHHHHHh
Confidence 344444445555322 38999999999999999999876
No 452
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=92.62 E-value=0.054 Score=55.15 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLl 89 (621)
.+.|.||+|+||||+++.++..+
T Consensus 46 ~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 46 NALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CEEECBCTTSSHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999876
No 453
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=92.58 E-value=0.066 Score=54.84 Aligned_cols=24 Identities=17% Similarity=0.416 Sum_probs=21.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHhhC
Q 038045 66 ILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 66 iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
..|+|+|.+|+|||||++.|.+.-
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 369999999999999999999853
No 454
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=92.57 E-value=0.058 Score=59.21 Aligned_cols=22 Identities=36% Similarity=0.620 Sum_probs=20.8
Q ss_pred EEEECCCCCcHHHHHHHHHhhC
Q 038045 68 IGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 68 VGI~GpSGSGKSTLlr~LagLl 89 (621)
+.|.||+|+|||||+++|++..
T Consensus 52 vLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999999976
No 455
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=92.56 E-value=0.052 Score=50.62 Aligned_cols=26 Identities=27% Similarity=0.161 Sum_probs=22.0
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhh
Q 038045 63 DGIILIGLAGPSGAGKTIFTEKILNF 88 (621)
Q Consensus 63 e~~iIVGI~GpSGSGKSTLlr~LagL 88 (621)
.+.+-|+|+|++|+|||||++.+.+-
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhC
Confidence 34567999999999999999998653
No 456
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=92.53 E-value=0.07 Score=54.80 Aligned_cols=35 Identities=20% Similarity=0.241 Sum_probs=28.2
Q ss_pred EeecceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 52 IRACQLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 52 Lk~IsL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
|+.+.--+++|+ ++.|.|++|+|||||+..++...
T Consensus 58 LD~~lgGl~~G~---l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 58 LDRMTYGYKRRN---FVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp HHHHHSSBCTTC---EEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHhhcCCCCCCc---EEEEEeCCCCCHHHHHHHHHHHH
Confidence 344433488999 99999999999999999988644
No 457
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=92.53 E-value=0.064 Score=53.19 Aligned_cols=26 Identities=15% Similarity=0.279 Sum_probs=23.0
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 64 GIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 64 ~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
+.+.|+|+|.+|+|||||++.|.+..
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999999854
No 458
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=92.52 E-value=0.084 Score=51.17 Aligned_cols=23 Identities=30% Similarity=0.670 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLl 89 (621)
+|.|-|+.||||||+++.|+..+
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 78999999999999999999877
No 459
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=92.52 E-value=0.063 Score=54.77 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=24.5
Q ss_pred EeCCCcceEEEEECCCCCcHHHHHHHHHhh
Q 038045 59 AQKNDGIILIGLAGPSGAGKTIFTEKILNF 88 (621)
Q Consensus 59 I~~Ge~~iIVGI~GpSGSGKSTLlr~LagL 88 (621)
+++|+ ++.|.|++|+|||||+..++..
T Consensus 95 l~~g~---i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 95 LESQS---VTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EETTE---EEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCe---EEEEECCCCCCHHHHHHHHHHH
Confidence 67888 9999999999999999998864
No 460
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=92.49 E-value=0.07 Score=49.92 Aligned_cols=25 Identities=16% Similarity=0.066 Sum_probs=21.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
.+-|+|+|++|+|||||++.+.+-.
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 4569999999999999999998743
No 461
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=92.48 E-value=0.086 Score=54.86 Aligned_cols=31 Identities=32% Similarity=0.413 Sum_probs=25.3
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEEC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFMPSIAVISMD 98 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLlP~sGvI~lD 98 (621)
-+.|.||+|+|||||+++|+... +.-.+.++
T Consensus 119 ~vLl~GppGtGKT~la~aia~~~-~~~~~~i~ 149 (357)
T 3d8b_A 119 GILLFGPPGTGKTLIGKCIASQS-GATFFSIS 149 (357)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHT-TCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHc-CCeEEEEe
Confidence 68999999999999999999987 33344444
No 462
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=92.46 E-value=0.067 Score=53.20 Aligned_cols=28 Identities=21% Similarity=0.277 Sum_probs=23.6
Q ss_pred CCcceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 62 NDGIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 62 Ge~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
+.+.+.|+++|.+|+|||||++.|.+..
T Consensus 36 ~~~~~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 36 DVNSLTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp TCCEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3345689999999999999999998753
No 463
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.45 E-value=0.085 Score=57.18 Aligned_cols=32 Identities=31% Similarity=0.497 Sum_probs=26.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFMPSIAVISMDN 99 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg 99 (621)
=|.+.||+|+|||+|+++|++.. +...+.+++
T Consensus 208 GiLL~GPPGtGKT~lakAiA~~~-~~~~~~v~~ 239 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVANST-KAAFIRVNG 239 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHHHH-TCEEEEEEG
T ss_pred eEEEECCCCCCHHHHHHHHHHHh-CCCeEEEec
Confidence 48999999999999999999987 455566654
No 464
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=92.44 E-value=0.086 Score=54.78 Aligned_cols=31 Identities=32% Similarity=0.603 Sum_probs=24.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEEC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFMPSIAVISMD 98 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLlP~sGvI~lD 98 (621)
.+.|.||+|+||||+++.|+..+ +...+.++
T Consensus 74 ~ill~Gp~GtGKT~la~~la~~l-~~~~~~~~ 104 (376)
T 1um8_A 74 NILLIGPTGSGKTLMAQTLAKHL-DIPIAISD 104 (376)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT-TCCEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHh-CCCEEEec
Confidence 48899999999999999999988 33344444
No 465
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=92.42 E-value=0.021 Score=66.31 Aligned_cols=39 Identities=26% Similarity=0.375 Sum_probs=29.5
Q ss_pred ceEEeCCCcceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEEC
Q 038045 56 QLLAQKNDGIILIGLAGPSGAGKTIFTEKILNFMPSIAVISMD 98 (621)
Q Consensus 56 sL~I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lD 98 (621)
++.+.++. .+.|.||+|+|||||+++|++.+ +...+.++
T Consensus 505 ~~~~~~~~---~vLL~GppGtGKT~Lakala~~~-~~~~i~v~ 543 (806)
T 1ypw_A 505 KFGMTPSK---GVLFYGPPGCGKTLLAKAIANEC-QANFISIK 543 (806)
T ss_dssp CCCCCCCC---CCCCBCCTTSSHHHHHHHHHHHH-TCCCCCCC
T ss_pred hcCCCCCc---eeEEECCCCCCHHHHHHHHHHHh-CCCEEEEe
Confidence 33455666 68999999999999999999987 33344444
No 466
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=92.36 E-value=0.075 Score=54.31 Aligned_cols=31 Identities=26% Similarity=0.385 Sum_probs=25.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEEC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFMPSIAVISMD 98 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLlP~sGvI~lD 98 (621)
-+.|.||+|+|||+|+++|+... +...+.++
T Consensus 53 ~vLl~GppGtGKT~la~aia~~~-~~~~~~v~ 83 (322)
T 3eie_A 53 GILLYGPPGTGKSYLAKAVATEA-NSTFFSVS 83 (322)
T ss_dssp EEEEECSSSSCHHHHHHHHHHHH-TCEEEEEE
T ss_pred eEEEECCCCCcHHHHHHHHHHHH-CCCEEEEc
Confidence 58999999999999999999976 33344444
No 467
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=92.36 E-value=0.06 Score=54.10 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=21.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHhhC
Q 038045 66 ILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 66 iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
..|+|+|+.|||||||++.|.|.-
T Consensus 25 ~~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 25 PQIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTSC
T ss_pred CeEEEEcCCCCCHHHHHHHHHCCC
Confidence 369999999999999999999863
No 468
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=92.33 E-value=0.063 Score=57.80 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLl 89 (621)
.+.|.||+|+|||||+++|++.+
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999866
No 469
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.30 E-value=0.076 Score=49.99 Aligned_cols=25 Identities=20% Similarity=0.125 Sum_probs=21.4
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhh
Q 038045 64 GIILIGLAGPSGAGKTIFTEKILNF 88 (621)
Q Consensus 64 ~~iIVGI~GpSGSGKSTLlr~LagL 88 (621)
+.+-|+|+|++|+|||||++.+.+.
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhC
Confidence 3467999999999999999998864
No 470
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.27 E-value=0.1 Score=56.24 Aligned_cols=31 Identities=26% Similarity=0.514 Sum_probs=26.3
Q ss_pred EEEECCCCCcHHHHHHHHHhhCCCeeEEEECC
Q 038045 68 IGLAGPSGAGKTIFTEKILNFMPSIAVISMDN 99 (621)
Q Consensus 68 VGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg 99 (621)
|.+.||+|+|||+|+++|++.. +...+.+++
T Consensus 185 vLL~GPPGTGKTllAkAiA~e~-~~~f~~v~~ 215 (405)
T 4b4t_J 185 VILYGPPGTGKTLLARAVAHHT-DCKFIRVSG 215 (405)
T ss_dssp EEEESCSSSSHHHHHHHHHHHH-TCEEEEEEG
T ss_pred eEEeCCCCCCHHHHHHHHHHhh-CCCceEEEh
Confidence 8899999999999999999987 455666654
No 471
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=92.27 E-value=0.058 Score=53.86 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=20.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhh
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNF 88 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagL 88 (621)
.+-|+|+|.+|+|||||++.|.+.
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEEEECCCCCCHHHHHHHHhCC
Confidence 356999999999999999998664
No 472
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=92.25 E-value=0.11 Score=55.90 Aligned_cols=33 Identities=24% Similarity=0.370 Sum_probs=26.5
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFMPSIAVISMDN 99 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg 99 (621)
-+.|.||+|+|||||++.|+..+.....+.++.
T Consensus 169 ~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~ 201 (444)
T 2zan_A 169 GILLFGPPGTGKSYLAKAVATEANNSTFFSISS 201 (444)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCCSSEEEEECC
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeH
Confidence 689999999999999999999874344555553
No 473
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.21 E-value=0.095 Score=51.00 Aligned_cols=29 Identities=21% Similarity=0.470 Sum_probs=24.8
Q ss_pred CCCcceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 61 KNDGIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 61 ~Ge~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
.|.+..++.+.|..|+||||++..|+..+
T Consensus 10 ~~~~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 10 HGMASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp TTCCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCcceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 35567799999999999999999998544
No 474
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=92.19 E-value=0.13 Score=54.13 Aligned_cols=127 Identities=18% Similarity=0.140 Sum_probs=60.2
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC----CCeeEEEECCcccc----cccccccCCCCcccccchHHHH-HHHHhcCCCccC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFM----PSIAVISMDNYNDS----SRVVDGNFDDPRLTDYDTLLEN-VRDLREGKPVQV 137 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLl----P~sGvI~lDg~~~~----~R~Ig~vfQdp~l~d~~tV~en-L~~L~~gk~V~~ 137 (621)
++-|.||+|+|||||+-.++... ++..++++|..... .+.+|...++.......++.+. +.....-..+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i-- 107 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAI-- 107 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTC--
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHh--
Confidence 58999999999999966655433 24557788865322 1234544433222222233332 2211000000
Q ss_pred ccccccccCccCCceeecCCccEEEEecceecc--ccccCCCCee-EEecCCchH----HHHHHHHHHHHHcCCCceehH
Q 038045 138 PIYDFESSSRTGYRTVEVPSSRIVIIEGIYALS--EKLRPLLDLR-VSVTGGVHF----DLVKRVLRDIQRVGQEPEEII 210 (621)
Q Consensus 138 p~yd~~~~~rsggq~qrVa~ArVLIvEG~lLLl--DEp~s~LDlk-V~Vd~~~d~----~LirRI~Rdl~erG~Ti~~Vt 210 (621)
+-...+++|+|..-.+. +|....+.-. +. + -... ..++++.+..++.+.+++.+-
T Consensus 108 ----------------~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~g-s-v~qaR~~s~~LrkL~~~ak~~~i~vi~tN 169 (333)
T 3io5_A 108 ----------------ERGEKVVVFIDSLGNLASKKETEDALNEKVVS-D-MTRAKTMKSLFRIVTPYFSTKNIPCIAIN 169 (333)
T ss_dssp ----------------CTTCCEEEEEECSTTCBCC----------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred ----------------hccCceEEEEecccccccchhccCcccccccc-H-HHHHHHHHHHHHHHHHHHHHhCCEEEEEC
Confidence 01134789999877665 3443332210 00 0 0122 234455556677787777665
Q ss_pred hHH
Q 038045 211 QQI 213 (621)
Q Consensus 211 Hd~ 213 (621)
|-.
T Consensus 170 QV~ 172 (333)
T 3io5_A 170 HTY 172 (333)
T ss_dssp EC-
T ss_pred Cee
Confidence 543
No 475
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=92.13 E-value=0.093 Score=57.17 Aligned_cols=31 Identities=26% Similarity=0.545 Sum_probs=25.9
Q ss_pred EEEECCCCCcHHHHHHHHHhhCCCeeEEEECC
Q 038045 68 IGLAGPSGAGKTIFTEKILNFMPSIAVISMDN 99 (621)
Q Consensus 68 VGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg 99 (621)
+.+.||+|+||||+++.|+..+ +...+.++.
T Consensus 53 iLl~GppGtGKT~lar~lA~~l-~~~~~~v~~ 83 (444)
T 1g41_A 53 ILMIGPTGVGKTEIARRLAKLA-NAPFIKVEA 83 (444)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT-TCCEEEEEG
T ss_pred EEEEcCCCCCHHHHHHHHHHHc-CCCceeecc
Confidence 8899999999999999999998 344555554
No 476
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=92.09 E-value=0.1 Score=50.07 Aligned_cols=23 Identities=22% Similarity=0.528 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLl 89 (621)
+|.|-|+-||||||.++.|+..+
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L 24 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999877
No 477
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=92.04 E-value=0.039 Score=51.05 Aligned_cols=24 Identities=13% Similarity=0.198 Sum_probs=5.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhh
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNF 88 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagL 88 (621)
.+-|+|+|++|+|||||++.+.+.
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEEC-----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999998875
No 478
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.02 E-value=0.1 Score=56.67 Aligned_cols=32 Identities=19% Similarity=0.320 Sum_probs=26.6
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFMPSIAVISMDN 99 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg 99 (621)
=|.+-||+|+|||+|+++|++.. +.-.+.+++
T Consensus 217 GvLLyGPPGTGKTllAkAiA~e~-~~~f~~v~~ 248 (434)
T 4b4t_M 217 GALMYGPPGTGKTLLARACAAQT-NATFLKLAA 248 (434)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH-TCEEEEEEG
T ss_pred eeEEECcCCCCHHHHHHHHHHHh-CCCEEEEeh
Confidence 58999999999999999999987 445566654
No 479
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=91.97 E-value=0.1 Score=49.78 Aligned_cols=27 Identities=30% Similarity=0.350 Sum_probs=23.0
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 63 DGIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 63 e~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
+..+-|+|+|++|+|||||++.+.+..
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCC
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCC
Confidence 345679999999999999999998754
No 480
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=91.97 E-value=0.13 Score=56.91 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=27.9
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhhC----CCeeEEEECCc
Q 038045 63 DGIILIGLAGPSGAGKTIFTEKILNFM----PSIAVISMDNY 100 (621)
Q Consensus 63 e~~iIVGI~GpSGSGKSTLlr~LagLl----P~sGvI~lDg~ 100 (621)
.++.+|+|+|++||||||++..|+..+ -....|..|-|
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~ 140 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTF 140 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEecccc
Confidence 346699999999999999999999654 13556666643
No 481
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=91.93 E-value=0.12 Score=50.81 Aligned_cols=23 Identities=17% Similarity=0.416 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLl 89 (621)
-+.|.|++|+|||++++.|+...
T Consensus 31 ~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 31 PVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp CEEEECCTTSCHHHHHHHHHHTS
T ss_pred CEEEECCCCCcHHHHHHHHHHhc
Confidence 47899999999999999999877
No 482
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=91.90 E-value=0.092 Score=49.20 Aligned_cols=24 Identities=21% Similarity=0.086 Sum_probs=21.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhh
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNF 88 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagL 88 (621)
.+-|+|+|++|+|||||++.+.+-
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999999864
No 483
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=91.85 E-value=0.077 Score=58.64 Aligned_cols=36 Identities=22% Similarity=0.441 Sum_probs=28.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhhC--C--CeeEEEECCc
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNFM--P--SIAVISMDNY 100 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagLl--P--~sGvI~lDg~ 100 (621)
+.+|.++|.+||||||+++.|+..+ + +.-.++.|.+
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~ 74 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEY 74 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHH
Confidence 4589999999999999999998765 2 3445666764
No 484
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=91.80 E-value=0.049 Score=59.00 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=23.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
+.+|+|+|++|+||||++..|++.+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999999977
No 485
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=91.80 E-value=0.053 Score=49.81 Aligned_cols=24 Identities=25% Similarity=0.206 Sum_probs=20.9
Q ss_pred cceEEEEECCCCCcHHHHHHHHHh
Q 038045 64 GIILIGLAGPSGAGKTIFTEKILN 87 (621)
Q Consensus 64 ~~iIVGI~GpSGSGKSTLlr~Lag 87 (621)
+.+-|+|+|++|+|||||++.+.+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 456799999999999999998854
No 486
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=91.80 E-value=0.043 Score=51.73 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=21.7
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhh
Q 038045 64 GIILIGLAGPSGAGKTIFTEKILNF 88 (621)
Q Consensus 64 ~~iIVGI~GpSGSGKSTLlr~LagL 88 (621)
..+-|+|+|++|+|||||++.|.+.
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTC
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4567999999999999999998853
No 487
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.76 E-value=0.12 Score=56.32 Aligned_cols=32 Identities=25% Similarity=0.381 Sum_probs=26.2
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFMPSIAVISMDN 99 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg 99 (621)
=|.+.||+|+|||+|+++|++.. +.-.+.+++
T Consensus 217 GvLL~GPPGtGKTllAkAiA~e~-~~~~~~v~~ 248 (437)
T 4b4t_L 217 GVLLYGPPGTGKTLLAKAVAATI-GANFIFSPA 248 (437)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH-TCEEEEEEG
T ss_pred eEEEECCCCCcHHHHHHHHHHHh-CCCEEEEeh
Confidence 48999999999999999999987 444555553
No 488
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=91.73 E-value=0.098 Score=54.55 Aligned_cols=31 Identities=26% Similarity=0.385 Sum_probs=24.5
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEEC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFMPSIAVISMD 98 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLlP~sGvI~lD 98 (621)
-|.|.||+|+|||||++.|+..+ ....+.++
T Consensus 86 ~iLL~GppGtGKT~la~ala~~~-~~~~~~v~ 116 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLAKAVATEA-NSTFFSVS 116 (355)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH-TCEEEEEE
T ss_pred eEEEECCCCCcHHHHHHHHHHHh-CCCEEEee
Confidence 48899999999999999999987 33344443
No 489
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=91.72 E-value=0.097 Score=58.27 Aligned_cols=35 Identities=23% Similarity=0.288 Sum_probs=26.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhhCC--CeeEEEECC
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNFMP--SIAVISMDN 99 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagLlP--~sGvI~lDg 99 (621)
+.+|.|+|++||||||+++.|+..+. +.....+|+
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~ 408 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDG 408 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECc
Confidence 46899999999999999999998662 222445554
No 490
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=91.70 E-value=0.099 Score=56.58 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=22.8
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 64 GIILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 64 ~~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
.+.+|.++|.+||||||+++.|+..+
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999999765
No 491
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=91.65 E-value=0.1 Score=53.35 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLl 89 (621)
.+.|.||+|+||||+++.++..+
T Consensus 72 ~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 72 AVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999999999987
No 492
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.63 E-value=0.098 Score=53.58 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=22.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
+..+.|.||+|+|||||++.++..+
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 3379999999999999999999865
No 493
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=91.58 E-value=0.08 Score=52.56 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=22.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhhC
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
...|+|+|.+|+|||||++.|.|.-
T Consensus 26 ~~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 26 LPQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHCCC
Confidence 3469999999999999999999864
No 494
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=91.54 E-value=0.079 Score=58.70 Aligned_cols=24 Identities=13% Similarity=0.146 Sum_probs=22.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHhhC
Q 038045 66 ILIGLAGPSGAGKTIFTEKILNFM 89 (621)
Q Consensus 66 iIVGI~GpSGSGKSTLlr~LagLl 89 (621)
.+|.|+|.+||||||+++.|+..+
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L 419 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTF 419 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHH
T ss_pred eEEEecccCCCCHHHHHHHHHHHH
Confidence 589999999999999999999988
No 495
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=91.53 E-value=0.0067 Score=64.22 Aligned_cols=80 Identities=11% Similarity=-0.087 Sum_probs=58.1
Q ss_pred CccCCceeecCCccEEE---------EecceeccccccCCCCeeEEecCCchHHHHHHHHHHHHHcCCCceehHhHHHHH
Q 038045 146 SRTGYRTVEVPSSRIVI---------IEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRVGQEPEEIIQQISET 216 (621)
Q Consensus 146 ~rsggq~qrVa~ArVLI---------vEG~lLLlDEp~s~LDlkV~Vd~~~d~~LirRI~Rdl~erG~Ti~~VtHd~eea 216 (621)
..|+|+++++..+++++ .+|.++|+|||++.||+ .....+...+.+.+.+++.++|. +.
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~----------~~~~~l~~~l~~~~qt~i~~th~-~~- 332 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDP----------HRRQYLLDLAASVPQAIVTGTEL-AP- 332 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCH----------HHHHHHHHHHHHSSEEEEEESSC-CT-
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCH----------HHHHHHHHHHHhcCcEEEEEEec-cc-
Confidence 57899999999999999 89999999999999997 23334444444545788888883 21
Q ss_pred hccccccchhhhcCCCCceeeccCcee
Q 038045 217 SAKNLSVDQIKAVYPEGHTETMEQTYD 243 (621)
Q Consensus 217 ~~R~v~~~d~iavl~eg~Ie~~~~~aD 243 (621)
.++.+..+..|.+...+.+.+
T Consensus 333 ------~~~~i~~l~~G~i~~~g~~~~ 353 (359)
T 2o5v_A 333 ------GAALTLRAQAGRFTPVADEEM 353 (359)
T ss_dssp ------TCSEEEEEETTEEEECCCTTT
T ss_pred ------cCCEEEEEECCEEEecCCHHH
Confidence 445566677777766555444
No 496
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=91.49 E-value=0.15 Score=53.35 Aligned_cols=32 Identities=22% Similarity=0.381 Sum_probs=26.3
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECC
Q 038045 67 LIGLAGPSGAGKTIFTEKILNFMPSIAVISMDN 99 (621)
Q Consensus 67 IVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg 99 (621)
-+.|.||+|+|||+|++.|+... +.-.+.++.
T Consensus 150 ~vLL~GppGtGKT~la~aia~~~-~~~~~~v~~ 181 (389)
T 3vfd_A 150 GLLLFGPPGNGKTMLAKAVAAES-NATFFNISA 181 (389)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHT-TCEEEEECS
T ss_pred eEEEECCCCCCHHHHHHHHHHhh-cCcEEEeeH
Confidence 69999999999999999999987 444555553
No 497
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=91.42 E-value=0.12 Score=49.12 Aligned_cols=25 Identities=20% Similarity=0.170 Sum_probs=21.6
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhh
Q 038045 64 GIILIGLAGPSGAGKTIFTEKILNF 88 (621)
Q Consensus 64 ~~iIVGI~GpSGSGKSTLlr~LagL 88 (621)
..+-|.|+|++|+|||||++.+.+-
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcC
Confidence 3467999999999999999999874
No 498
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=91.36 E-value=0.11 Score=54.47 Aligned_cols=33 Identities=21% Similarity=0.418 Sum_probs=24.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEE
Q 038045 65 IILIGLAGPSGAGKTIFTEKILNFMPSIAVISM 97 (621)
Q Consensus 65 ~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~l 97 (621)
..+|.|-|+-||||||+++.|+..+...|++..
T Consensus 4 ~~fI~~EG~dGsGKTT~~~~La~~L~~~gv~~t 36 (331)
T 1e2k_A 4 LLRVYIDGPHGMGKTTTTQLLVALGSRDDIVYV 36 (331)
T ss_dssp EEEEEECSCTTSSHHHHHHHHTC----CCEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhCCEEEE
Confidence 358999999999999999999998743444443
No 499
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=91.34 E-value=0.13 Score=52.07 Aligned_cols=39 Identities=15% Similarity=0.184 Sum_probs=29.3
Q ss_pred EeCCCcceEEEEECCCCCcHHHHHHHHHhhCCCeeEEEEC
Q 038045 59 AQKNDGIILIGLAGPSGAGKTIFTEKILNFMPSIAVISMD 98 (621)
Q Consensus 59 I~~Ge~~iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lD 98 (621)
+..+..+-++.+.||+|+||||+++.++..+ +...+.++
T Consensus 42 l~~~~~~~~~L~~G~~G~GKT~la~~la~~l-~~~~~~i~ 80 (324)
T 3u61_B 42 TSKGKIPHIILHSPSPGTGKTTVAKALCHDV-NADMMFVN 80 (324)
T ss_dssp HHTTCCCSEEEECSSTTSSHHHHHHHHHHHT-TEEEEEEE
T ss_pred HHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh-CCCEEEEc
Confidence 3445544578889999999999999999987 44455554
No 500
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.23 E-value=0.16 Score=55.57 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=27.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECC
Q 038045 66 ILIGLAGPSGAGKTIFTEKILNFMPSIAVISMDN 99 (621)
Q Consensus 66 iIVGI~GpSGSGKSTLlr~LagLlP~sGvI~lDg 99 (621)
..+.|.||+|+||||+++.++..+ +.-.+.++.
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l-~~~~i~in~ 110 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQEL-GYDILEQNA 110 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT-TCEEEEECT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc-CCCEEEEeC
Confidence 378999999999999999999987 445565553
Done!