BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038048
(575 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FBE|A Chain A, Crystal Structure Of The C136aC164A VARIANT OF
MITOCHONDRIAL ISOFORM Of Glutaminyl Cyclase From
Drosophila Melanogaster
pdb|4FBE|B Chain B, Crystal Structure Of The C136aC164A VARIANT OF
MITOCHONDRIAL ISOFORM Of Glutaminyl Cyclase From
Drosophila Melanogaster
Length = 330
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 10/76 (13%)
Query: 367 NPHGKSGLASTMKKNCGSSPGIGVSSAHQEAHVSPAAVRRNLEVLFTQPRRPFRE----- 421
NP+ + L + + PG+ A A PAA+ NL + + +P ++
Sbjct: 101 NPNAERYLVLSAHYDSKYMPGVEFLGATDSA--VPAAMLLNLAQVLQEQLKPLKKSKLSL 158
Query: 422 ---FSDGEQGKDRWGP 434
F DGE+ + WGP
Sbjct: 159 MLLFFDGEEAFEEWGP 174
>pdb|1UM9|B Chain B, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UM9|D Chain D, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UMB|B Chain B, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMB|D Chain D, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMC|B Chain B, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMC|D Chain D, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMD|B Chain B, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
pdb|1UMD|D Chain D, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
Length = 324
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 388 IGVSSAHQEAHVSPAAVRRNLEVLFTQPRRPFREFSDGEQGKDRWGPIGSSNI-NQSSEK 446
+ VS+ + + AA+R V+F +P+R +R + +D PIG + + + +
Sbjct: 146 VAVSTPYDAKGLLKAAIRDEDPVVFLEPKRLYRSVKEEVPEEDYTLPIGKAALRREGKDL 205
Query: 447 TLHTYSTVL 455
TL Y TV+
Sbjct: 206 TLICYGTVM 214
>pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain
1
Length = 311
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 159 SRILGNLAWAYMQQNNFEMAEQYYRKALS-----LGVD----MNKQCNLAICLMHMNRVT 209
++ L NLA Q +E E YY++AL LG D + NLA C + +
Sbjct: 153 AKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFK 212
Query: 210 EAKSLLQAVKISAGNRQMDT 229
+A++L + + A R+ +
Sbjct: 213 QAETLYKEILTRAHEREFGS 232
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 163 GNLAWAYMQQNNFEMAEQYYRKALSLGVDM-NKQCNLAICLMHMNRVTEAK 212
GNLA Y +Q ++A YR+A+ L + CNLA L V EA+
Sbjct: 241 GNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAE 291
>pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
pdb|3CEQ|B Chain B, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
Length = 283
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 9/78 (11%)
Query: 159 SRILGNLAWAYMQQNNFEMAEQYYRKALS-----LGVD----MNKQCNLAICLMHMNRVT 209
++ L NLA Q E E YYR+AL LG D + NLA C + +
Sbjct: 127 AKQLSNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQ 186
Query: 210 EAKSLLQAVKISAGNRQM 227
+A++L + + A ++
Sbjct: 187 DAETLYKEILTRAHEKEF 204
>pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|D Chain D, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|F Chain F, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|H Chain H, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
Length = 283
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 9/78 (11%)
Query: 159 SRILGNLAWAYMQQNNFEMAEQYYRKALS-----LGVD----MNKQCNLAICLMHMNRVT 209
++ L NLA Q E E YYR+AL LG D + NLA C + +
Sbjct: 127 AKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQ 186
Query: 210 EAKSLLQAVKISAGNRQM 227
+A++L + + A ++
Sbjct: 187 DAETLYKEILTRAHEKEF 204
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.129 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,158,664
Number of Sequences: 62578
Number of extensions: 705010
Number of successful extensions: 1338
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1318
Number of HSP's gapped (non-prelim): 30
length of query: 575
length of database: 14,973,337
effective HSP length: 104
effective length of query: 471
effective length of database: 8,465,225
effective search space: 3987120975
effective search space used: 3987120975
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)