BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038048
(575 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q17551|RPM1_CAEEL E3 ubiquitin-protein ligase rpm-1 OS=Caenorhabditis elegans GN=rpm-1
PE=1 SV=1
Length = 3766
Score = 37.7 bits (86), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 195 QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMDTSYSRSFERAIQMLTELESPSVLKLT 254
+C LA CL+ + ++ E+ S + + ++ + S+ F AI L+ ++ S L+L+
Sbjct: 3259 KCELANCLLSLIQMPESVSYTETLSTGGKSKAVAVVSSKRFWTAISSLSLIKDKSWLELS 3318
Query: 255 E-LEVGDDQKNQRPFALPA---DGNTNPQVTC 282
E + D+++Q P L DG+T QV C
Sbjct: 3319 ERWKTVQDEEDQEPVLLCENHDDGHTVAQVFC 3350
>sp|Q2HJJ0|KLC4_BOVIN Kinesin light chain 4 OS=Bos taurus GN=KLC4 PE=2 SV=2
Length = 616
Score = 35.8 bits (81), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 162 LGNLAWAYMQQNNFEMAEQYYRKALS-----LGVD----MNKQCNLAICLMHMNRVTEAK 212
L NLA Q +E E+YYR+AL+ LG D + NLA C + + EA+
Sbjct: 337 LNNLALLCQNQGKYEAVERYYRRALAIYEGQLGPDNPNVARTKNNLASCYLKQGKYAEAE 396
Query: 213 SLLQAVKISA 222
+L + + A
Sbjct: 397 TLYKEILTRA 406
>sp|Q8TE82|S3TC1_HUMAN SH3 domain and tetratricopeptide repeat-containing protein 1 OS=Homo
sapiens GN=SH3TC1 PE=1 SV=3
Length = 1336
Score = 35.8 bits (81), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 71/157 (45%), Gaps = 17/157 (10%)
Query: 39 KKGDIFHVIHKVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGD-RVDSALKDMAVV 97
+ G I++++ + D A+++ L DP+ + LF AA GD D A + V
Sbjct: 1075 QAGKIYYILRQSELVDLYIQVAQNVALYTGDPNLGLELFEAA---GDIFFDGAWEREKAV 1131
Query: 98 MKQLDRSDEAIEARSGRIEEEIEL------LQNKLKNIEEGIAFAGVKTKMARSQGKKIQ 151
DR+ + +G + E+ L L L+ +EG+ FA + ++ + G ++
Sbjct: 1132 SFYRDRA-LPLAVTTGNRKAELRLCNKLVALLATLEEPQEGLEFAHMALALSITLGDRLN 1190
Query: 152 ITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSL 188
V + LA + + E+AE +Y KALSL
Sbjct: 1191 ERVAYHR------LAALQHRLGHGELAEHFYLKALSL 1221
>sp|P46824|KLC_DROME Kinesin light chain OS=Drosophila melanogaster GN=Klc PE=1 SV=1
Length = 508
Score = 35.4 bits (80), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Query: 159 SRILGNLAWAYMQQNNFEMAEQYYRKALS-----LGVD----MNKQCNLAICLMHMNRVT 209
++ L NLA Q ++ E+YY++AL LG D + NLA C + R T
Sbjct: 312 AKQLNNLALLCQNQGKYDEVEKYYQRALDIYESKLGPDDPNVAKTKNNLAGCYLKQGRYT 371
Query: 210 EAKSLLQAVKISAGNRQM 227
EA+ L + V A R+
Sbjct: 372 EAEILYKQVLTRAHEREF 389
>sp|Q80VA5|S3TC2_MOUSE SH3 domain and tetratricopeptide repeat-containing protein 2 OS=Mus
musculus GN=Sh3tc2 PE=2 SV=2
Length = 1289
Score = 35.4 bits (80), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 114 RIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQN 173
RI ++ LQ L+ E+ + FA + +++ G + Q V + LA Y N
Sbjct: 1128 RIFNKLTELQISLEGYEKALEFATLAARLSVLTGDQKQELVAFHR------LATVYFSLN 1181
Query: 174 NFEMAEQYYRKALSL 188
+EMAE Y K LSL
Sbjct: 1182 MYEMAEDCYLKTLSL 1196
>sp|Q9DBS5|KLC4_MOUSE Kinesin light chain 4 OS=Mus musculus GN=Klc4 PE=1 SV=1
Length = 619
Score = 34.7 bits (78), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 9/70 (12%)
Query: 162 LGNLAWAYMQQNNFEMAEQYYRKALS-----LGVD----MNKQCNLAICLMHMNRVTEAK 212
L NLA Q +E E+YY++AL+ LG D + NLA C + + +EA+
Sbjct: 340 LNNLALLCQNQGKYEAVERYYQRALAIYESQLGPDNPNVARTKNNLASCYLKQGKYSEAE 399
Query: 213 SLLQAVKISA 222
+L + + A
Sbjct: 400 ALYKEILTCA 409
>sp|Q5PQM2|KLC4_RAT Kinesin light chain 4 OS=Rattus norvegicus GN=Klc4 PE=2 SV=1
Length = 619
Score = 34.7 bits (78), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 9/70 (12%)
Query: 162 LGNLAWAYMQQNNFEMAEQYYRKALS-----LGVD----MNKQCNLAICLMHMNRVTEAK 212
L NLA Q +E E+YY++AL+ LG D + NLA C + + +EA+
Sbjct: 340 LNNLALLCQNQGKYEAVERYYQRALAIYERQLGPDNPNVARTKNNLASCYLKQGKYSEAE 399
Query: 213 SLLQAVKISA 222
+L + + A
Sbjct: 400 TLYKEILTRA 409
>sp|Q9NSK0|KLC4_HUMAN Kinesin light chain 4 OS=Homo sapiens GN=KLC4 PE=1 SV=3
Length = 619
Score = 34.3 bits (77), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 162 LGNLAWAYMQQNNFEMAEQYYRKALS-----LGVD----MNKQCNLAICLMHMNRVTEAK 212
L NLA Q +E E+YY++AL+ LG D + NLA C + + EA+
Sbjct: 340 LNNLALLCQNQGKYEAVERYYQRALAIYEGQLGPDNPNVARTKNNLASCYLKQGKYAEAE 399
Query: 213 SLLQAVKISA 222
+L + + A
Sbjct: 400 TLYKEILTRA 409
>sp|O46634|CD166_CANFA CD166 antigen (Fragment) OS=Canis familiaris GN=ALCAM PE=2 SV=1
Length = 521
Score = 34.3 bits (77), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 5/122 (4%)
Query: 54 DSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSG 113
+SPY+ ++ I P V+L A N +R ++L A+ + + D +DE +
Sbjct: 399 ESPYINGRYYSTIINSPEENVTLTCTAENQLERTVNSLNVSAISIPEHDEADEISDENRE 458
Query: 114 RIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAW-AYMQQ 172
++ L+ + + G AGV + + K T + ++ LGNL ++Q
Sbjct: 459 QVNHRATLIVGIVLRLLHGALVAGVVYWLYVKKSK----TASKHVNKDLGNLEENKKLEQ 514
Query: 173 NN 174
NN
Sbjct: 515 NN 516
>sp|P37941|ODBB_BACSU 2-oxoisovalerate dehydrogenase subunit beta OS=Bacillus subtilis
(strain 168) GN=bfmBAB PE=1 SV=1
Length = 327
Score = 33.9 bits (76), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 8/112 (7%)
Query: 345 RAASQFSLPLFVDNGRRGSYIGNPHGKSGLASTMKKNCGSSPGIGV---SSAHQEAHVSP 401
R+ + +S P+ V R Y G HG + +++ + PG+ + S+ + +
Sbjct: 104 RSNNDWSCPIVV----RAPYGGGVHGALYHSQSVEAIFANQPGLKIVMPSTPYDAKGLLK 159
Query: 402 AAVRRNLEVLFTQPRRPFREFSDGEQGKDRWGPIGSSNIN-QSSEKTLHTYS 452
AAVR VLF + +R +R D PIG +++ + + T+ TY
Sbjct: 160 AAVRDEDPVLFFEHKRAYRLIKGEVPADDYVLPIGKADVKREGDDITVITYG 211
>sp|O46651|CD166_RABIT CD166 antigen (Fragment) OS=Oryctolagus cuniculus GN=ALCAM PE=2
SV=1
Length = 521
Score = 33.5 bits (75), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 52/112 (46%), Gaps = 4/112 (3%)
Query: 54 DSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSG 113
+SPY+ ++ I P V+L AA N +R ++L A+ + + D +DE +
Sbjct: 399 ESPYINGRYYSKIIISPEENVTLTCAAENQLERTVNSLNVSAISIPEHDEADEISDENRE 458
Query: 114 RIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNL 165
++ ++ +L+ + + AGV + + K T + ++ LGN+
Sbjct: 459 KVNDQAKLIVGIVVGLLLAALVAGVVYWLYMKKSK----TASKHVNKDLGNM 506
>sp|B2IGZ5|RLMN_BEII9 Dual-specificity RNA methyltransferase RlmN OS=Beijerinckia indica
subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712)
GN=rlmN PE=3 SV=1
Length = 391
Score = 33.5 bits (75), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 16/98 (16%)
Query: 477 CREKPVGSSIRKLTFEQAIPTENDQAQAIPCVKRKLVVPTKDESKIGLPNSKNALP---- 532
CR P S+ R++TFE + + + + P R+L+ K G+P N +P
Sbjct: 279 CRTYPGASNARRITFEYVMLKDINDS---PAEARELIRLLK-----GIPAKINLIPFNPW 330
Query: 533 --SP-NCEDWTRRSWKDNDQVKDEPVKQPLRTAADRDL 567
+P +C DW R + +D V + P+RT RD+
Sbjct: 331 PGAPYDCSDWDRIE-RFSDIVFNAGYASPVRTPRGRDI 367
>sp|Q5SLR3|ODBB_THET8 2-oxoisovalerate dehydrogenase subunit beta OS=Thermus thermophilus
(strain HB8 / ATCC 27634 / DSM 579) GN=TTHA0230 PE=1
SV=1
Length = 324
Score = 32.7 bits (73), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 388 IGVSSAHQEAHVSPAAVRRNLEVLFTQPRRPFREFSDGEQGKDRWGPIGSSNI-NQSSEK 446
+ VS+ + + AA+R V+F +P+R +R + +D PIG + + + +
Sbjct: 146 VAVSTPYDAKGLLKAAIRDEDPVVFLEPKRLYRSVKEEVPEEDYTLPIGKAALRREGKDL 205
Query: 447 TLHTYSTVL 455
TL Y TV+
Sbjct: 206 TLIGYGTVM 214
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.129 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 216,592,926
Number of Sequences: 539616
Number of extensions: 9246620
Number of successful extensions: 20679
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 89
Number of HSP's that attempted gapping in prelim test: 20515
Number of HSP's gapped (non-prelim): 243
length of query: 575
length of database: 191,569,459
effective HSP length: 123
effective length of query: 452
effective length of database: 125,196,691
effective search space: 56588904332
effective search space used: 56588904332
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (29.3 bits)