Query 038048
Match_columns 575
No_of_seqs 309 out of 1837
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 07:02:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038048.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038048hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 99.8 2.2E-19 4.7E-24 195.7 18.7 225 41-265 204-465 (966)
2 KOG4626 O-linked N-acetylgluco 99.8 1.1E-18 2.4E-23 190.1 12.8 220 43-262 241-496 (966)
3 COG4783 Putative Zn-dependent 99.7 4E-16 8.7E-21 167.7 15.3 175 8-227 234-409 (484)
4 PRK15359 type III secretion sy 99.6 1E-13 2.2E-18 128.9 15.5 129 73-244 12-141 (144)
5 TIGR00990 3a0801s09 mitochondr 99.5 6E-13 1.3E-17 149.8 22.0 159 56-225 333-500 (615)
6 TIGR00990 3a0801s09 mitochondr 99.5 8.9E-13 1.9E-17 148.4 23.1 76 150-225 356-432 (615)
7 PRK10370 formate-dependent nit 99.5 1.2E-12 2.5E-17 128.4 17.4 123 67-226 52-178 (198)
8 PRK15174 Vi polysaccharide exp 99.5 2.6E-12 5.5E-17 146.5 22.4 76 151-226 238-318 (656)
9 PRK09782 bacteriophage N4 rece 99.5 4.5E-12 9.7E-17 150.0 24.9 165 61-227 516-712 (987)
10 KOG1126 DNA-binding cell divis 99.5 1.2E-13 2.6E-18 152.8 10.0 112 150-261 480-596 (638)
11 TIGR02521 type_IV_pilW type IV 99.4 2.1E-11 4.5E-16 114.7 22.2 159 56-225 33-202 (234)
12 TIGR02552 LcrH_SycD type III s 99.4 2.5E-12 5.4E-17 115.5 14.4 115 75-226 4-119 (135)
13 PRK11788 tetratricopeptide rep 99.4 2.4E-11 5.3E-16 127.2 22.2 159 61-225 114-282 (389)
14 PRK15174 Vi polysaccharide exp 99.4 2.7E-11 5.9E-16 138.2 23.9 151 64-225 187-351 (656)
15 PRK11788 tetratricopeptide rep 99.4 4.5E-11 9.7E-16 125.2 21.9 60 53-113 35-94 (389)
16 PRK09782 bacteriophage N4 rece 99.4 4.3E-11 9.4E-16 141.7 23.3 200 56-258 479-713 (987)
17 COG3063 PilF Tfp pilus assembl 99.4 2.1E-11 4.6E-16 121.5 16.6 131 59-226 40-173 (250)
18 TIGR02917 PEP_TPR_lipo putativ 99.4 6.9E-11 1.5E-15 132.7 22.8 74 152-226 763-837 (899)
19 PRK15359 type III secretion sy 99.3 1.4E-11 3E-16 114.7 13.5 125 42-205 14-139 (144)
20 KOG1126 DNA-binding cell divis 99.3 5.6E-12 1.2E-16 139.6 12.5 148 42-226 442-591 (638)
21 TIGR02521 type_IV_pilW type IV 99.3 1.2E-10 2.5E-15 109.7 19.7 165 50-223 61-234 (234)
22 PRK11447 cellulose synthase su 99.3 5.6E-11 1.2E-15 143.3 21.9 56 61-116 276-331 (1157)
23 PRK12370 invasion protein regu 99.3 5.3E-11 1.2E-15 133.0 20.1 147 68-225 318-474 (553)
24 TIGR02917 PEP_TPR_lipo putativ 99.3 1.4E-10 3E-15 130.3 23.4 176 51-226 462-669 (899)
25 KOG1840 Kinesin light chain [C 99.3 8.1E-12 1.8E-16 138.0 12.6 256 53-344 198-486 (508)
26 PRK11189 lipoprotein NlpI; Pro 99.3 3.4E-11 7.5E-16 124.4 15.4 120 70-226 42-166 (296)
27 PRK15179 Vi polysaccharide bio 99.3 8.1E-11 1.8E-15 134.9 19.6 148 41-225 73-221 (694)
28 PRK11447 cellulose synthase su 99.3 2E-10 4.4E-15 138.5 22.9 168 59-226 466-671 (1157)
29 PRK12370 invasion protein regu 99.3 5.7E-11 1.2E-15 132.8 16.6 144 68-222 275-436 (553)
30 PRK11189 lipoprotein NlpI; Pro 99.3 2E-10 4.4E-15 118.7 19.1 128 57-222 67-195 (296)
31 PRK15363 pathogenicity island 99.3 2E-10 4.4E-15 109.1 16.1 122 85-246 32-154 (157)
32 KOG1155 Anaphase-promoting com 99.2 2E-10 4.3E-15 123.5 15.9 118 67-221 343-461 (559)
33 KOG1125 TPR repeat-containing 99.2 1.6E-10 3.5E-15 126.7 14.8 55 62-116 293-347 (579)
34 TIGR03302 OM_YfiO outer membra 99.2 8.8E-10 1.9E-14 108.4 16.4 60 57-116 36-98 (235)
35 PRK10049 pgaA outer membrane p 99.2 3E-09 6.5E-14 123.4 23.3 161 65-226 248-427 (765)
36 KOG0553 TPR repeat-containing 99.2 2.1E-10 4.6E-15 118.0 12.0 72 153-224 109-181 (304)
37 PF13429 TPR_15: Tetratricopep 99.1 2.2E-10 4.8E-15 116.3 11.6 190 60-256 50-248 (280)
38 KOG1173 Anaphase-promoting com 99.1 1.6E-09 3.5E-14 118.7 16.2 178 49-226 307-523 (611)
39 PF13429 TPR_15: Tetratricopep 99.1 7.5E-10 1.6E-14 112.3 12.8 77 150-226 171-248 (280)
40 COG3063 PilF Tfp pilus assembl 99.1 1.5E-09 3.3E-14 108.5 14.3 127 62-223 77-204 (250)
41 PF13414 TPR_11: TPR repeat; P 99.1 5.1E-10 1.1E-14 90.0 8.3 66 158-223 2-69 (69)
42 PRK10747 putative protoheme IX 99.1 1E-08 2.2E-13 110.3 20.4 182 41-225 138-361 (398)
43 PLN03088 SGT1, suppressor of 99.1 2.4E-09 5.1E-14 114.0 15.1 75 152-226 29-104 (356)
44 PLN02789 farnesyltranstransfer 99.0 1.9E-08 4.1E-13 105.9 21.2 152 64-226 47-217 (320)
45 KOG0553 TPR repeat-containing 99.0 1.1E-09 2.4E-14 112.8 11.2 109 90-209 83-200 (304)
46 KOG1125 TPR repeat-containing 99.0 3.9E-09 8.6E-14 116.0 16.2 184 41-224 305-530 (579)
47 TIGR00540 hemY_coli hemY prote 99.0 1.3E-08 2.9E-13 109.6 19.9 166 60-225 159-370 (409)
48 PLN03088 SGT1, suppressor of 99.0 5.4E-09 1.2E-13 111.3 15.4 51 151-201 62-113 (356)
49 KOG0547 Translocase of outer m 99.0 1.2E-08 2.7E-13 110.4 16.7 49 62-110 123-171 (606)
50 KOG1840 Kinesin light chain [C 99.0 2.4E-08 5.3E-13 110.7 19.5 160 60-222 247-439 (508)
51 TIGR02795 tol_pal_ybgF tol-pal 99.0 1.1E-08 2.3E-13 88.7 12.8 101 89-226 3-110 (119)
52 cd00189 TPR Tetratricopeptide 99.0 6E-09 1.3E-13 82.3 10.4 97 90-223 2-99 (100)
53 PRK10049 pgaA outer membrane p 99.0 1.1E-08 2.4E-13 118.7 16.5 69 151-220 109-178 (765)
54 COG2956 Predicted N-acetylgluc 99.0 4.7E-08 1E-12 101.8 19.1 176 49-225 31-247 (389)
55 CHL00033 ycf3 photosystem I as 99.0 1.3E-08 2.8E-13 96.1 13.9 121 67-224 12-152 (168)
56 TIGR02552 LcrH_SycD type III s 98.9 8.9E-09 1.9E-13 92.4 11.9 115 43-194 5-120 (135)
57 PRK15179 Vi polysaccharide bio 98.9 8.8E-09 1.9E-13 118.3 14.8 119 71-226 69-188 (694)
58 TIGR03302 OM_YfiO outer membra 98.9 1.6E-08 3.4E-13 99.5 14.5 147 57-223 73-234 (235)
59 KOG2003 TPR repeat-containing 98.9 1.4E-08 3.1E-13 109.0 14.4 165 62-226 498-694 (840)
60 COG5010 TadD Flp pilus assembl 98.9 2E-08 4.4E-13 101.8 14.7 131 58-225 70-201 (257)
61 KOG1155 Anaphase-promoting com 98.9 1.9E-08 4.2E-13 108.5 15.0 144 42-222 351-496 (559)
62 PRK14574 hmsH outer membrane p 98.9 3E-08 6.5E-13 115.9 17.3 156 60-226 40-203 (822)
63 KOG0547 Translocase of outer m 98.9 2.3E-08 4.9E-13 108.5 14.4 167 47-224 353-535 (606)
64 PF13432 TPR_16: Tetratricopep 98.9 4.9E-09 1.1E-13 83.5 7.1 63 163-225 1-64 (65)
65 KOG1174 Anaphase-promoting com 98.9 6.2E-08 1.4E-12 103.4 17.2 169 58-226 304-505 (564)
66 KOG2002 TPR-containing nuclear 98.9 4.1E-08 9E-13 113.0 17.0 189 39-227 148-377 (1018)
67 PRK02603 photosystem I assembl 98.9 2.5E-08 5.4E-13 94.8 12.0 103 86-225 33-153 (172)
68 COG5010 TadD Flp pilus assembl 98.8 6.3E-08 1.4E-12 98.3 15.1 123 60-219 106-229 (257)
69 cd05804 StaR_like StaR_like; a 98.8 4.2E-08 9.1E-13 101.7 14.1 72 151-222 140-216 (355)
70 PRK10370 formate-dependent nit 98.8 4.6E-08 1E-12 96.0 13.3 117 41-194 59-179 (198)
71 KOG0548 Molecular co-chaperone 98.8 2.4E-07 5.1E-12 101.5 18.4 207 54-261 224-465 (539)
72 PRK15363 pathogenicity island 98.8 9.6E-08 2.1E-12 91.0 13.6 98 60-194 41-138 (157)
73 cd05804 StaR_like StaR_like; a 98.8 4.4E-07 9.6E-12 94.1 18.7 167 56-225 8-181 (355)
74 PRK10153 DNA-binding transcrip 98.7 2.1E-07 4.6E-12 103.9 16.0 130 69-226 357-487 (517)
75 PRK14574 hmsH outer membrane p 98.7 6.2E-07 1.3E-11 105.1 20.1 183 42-226 313-518 (822)
76 KOG2076 RNA polymerase III tra 98.7 2.8E-07 6E-12 105.7 16.6 125 62-223 147-272 (895)
77 TIGR02795 tol_pal_ybgF tol-pal 98.7 2.6E-07 5.6E-12 80.0 12.6 101 57-194 5-111 (119)
78 PF13414 TPR_11: TPR repeat; P 98.7 5.3E-08 1.2E-12 78.2 7.6 67 87-190 2-69 (69)
79 cd00189 TPR Tetratricopeptide 98.7 1.8E-07 4E-12 73.8 10.6 97 58-191 4-100 (100)
80 KOG1129 TPR repeat-containing 98.7 4.3E-07 9.2E-12 95.0 15.7 160 64-226 266-429 (478)
81 PF09976 TPR_21: Tetratricopep 98.7 5.7E-07 1.2E-11 83.3 14.5 120 62-219 19-145 (145)
82 PRK02603 photosystem I assembl 98.7 3.4E-07 7.4E-12 87.0 13.1 112 56-206 37-165 (172)
83 COG4235 Cytochrome c biogenesi 98.6 4.7E-07 1E-11 93.7 14.5 122 68-226 136-261 (287)
84 KOG1173 Anaphase-promoting com 98.6 3.8E-07 8.3E-12 100.5 14.4 150 46-199 372-530 (611)
85 PRK15331 chaperone protein Sic 98.6 4.1E-07 8.9E-12 87.3 12.9 121 85-249 34-155 (165)
86 PF13432 TPR_16: Tetratricopep 98.6 1.2E-07 2.6E-12 75.5 7.4 65 92-193 1-65 (65)
87 COG4783 Putative Zn-dependent 98.6 1.7E-06 3.8E-11 94.2 18.5 125 62-223 314-439 (484)
88 CHL00033 ycf3 photosystem I as 98.6 9.1E-07 2E-11 83.5 14.2 103 55-194 36-155 (168)
89 PRK14720 transcript cleavage f 98.6 5.3E-07 1.2E-11 105.6 14.8 141 60-222 37-179 (906)
90 PLN02789 farnesyltranstransfer 98.6 2.2E-06 4.7E-11 90.5 18.1 148 68-226 86-255 (320)
91 PF13424 TPR_12: Tetratricopep 98.6 1E-07 2.2E-12 78.5 5.8 66 157-222 3-76 (78)
92 PLN03098 LPA1 LOW PSII ACCUMUL 98.6 2.2E-07 4.7E-12 101.1 9.8 70 153-222 69-142 (453)
93 COG2956 Predicted N-acetylgluc 98.6 5.4E-06 1.2E-10 86.8 19.4 182 41-224 55-281 (389)
94 PRK10803 tol-pal system protei 98.6 8.6E-07 1.9E-11 91.1 13.6 101 89-226 143-251 (263)
95 KOG2002 TPR-containing nuclear 98.6 3.4E-06 7.3E-11 97.7 19.6 170 57-226 310-530 (1018)
96 PF12895 Apc3: Anaphase-promot 98.5 4.4E-07 9.6E-12 76.2 9.1 43 68-110 3-47 (84)
97 PRK10747 putative protoheme IX 98.5 6.8E-06 1.5E-10 88.6 20.4 167 58-227 122-329 (398)
98 PF12895 Apc3: Anaphase-promot 98.5 1.9E-07 4.2E-12 78.4 6.8 60 158-218 24-84 (84)
99 KOG4162 Predicted calmodulin-b 98.5 1E-06 2.3E-11 99.8 14.4 130 60-226 656-788 (799)
100 KOG1130 Predicted G-alpha GTPa 98.5 3.1E-07 6.6E-12 98.2 9.7 179 44-222 7-265 (639)
101 KOG3060 Uncharacterized conser 98.5 5.4E-06 1.2E-10 84.3 17.5 157 59-226 57-225 (289)
102 PF14559 TPR_19: Tetratricopep 98.5 2.4E-07 5.1E-12 74.0 6.3 57 169-225 1-58 (68)
103 KOG0550 Molecular chaperone (D 98.5 1.1E-06 2.4E-11 94.0 13.0 178 64-245 179-370 (486)
104 KOG0624 dsRNA-activated protei 98.5 5.1E-06 1.1E-10 87.6 17.4 183 43-226 60-257 (504)
105 KOG1174 Anaphase-promoting com 98.5 6.4E-06 1.4E-10 88.4 17.9 212 49-261 227-510 (564)
106 PRK11906 transcriptional regul 98.5 2.6E-06 5.5E-11 93.0 15.0 136 56-225 258-405 (458)
107 PF12688 TPR_5: Tetratrico pep 98.5 1.5E-06 3.2E-11 79.5 11.0 97 89-220 2-103 (120)
108 KOG2076 RNA polymerase III tra 98.5 1.7E-05 3.7E-10 91.4 21.7 72 158-229 413-486 (895)
109 KOG0548 Molecular co-chaperone 98.4 6.4E-06 1.4E-10 90.6 17.3 178 62-242 265-473 (539)
110 PF13371 TPR_9: Tetratricopept 98.4 7.2E-07 1.6E-11 72.2 7.4 62 165-226 1-63 (73)
111 KOG0550 Molecular chaperone (D 98.4 1E-06 2.2E-11 94.4 10.4 162 65-226 60-321 (486)
112 PF13424 TPR_12: Tetratricopep 98.4 5.9E-07 1.3E-11 73.9 6.7 74 86-189 3-76 (78)
113 KOG0543 FKBP-type peptidyl-pro 98.4 4.7E-06 1E-10 89.3 14.4 114 91-226 211-325 (397)
114 KOG1129 TPR repeat-containing 98.4 2.8E-06 6.1E-11 89.0 12.3 148 64-223 233-389 (478)
115 PRK10803 tol-pal system protei 98.4 4.6E-06 9.9E-11 85.8 13.3 105 56-194 145-252 (263)
116 COG3071 HemY Uncharacterized e 98.4 3.4E-05 7.5E-10 82.5 20.2 183 39-221 135-390 (400)
117 TIGR00540 hemY_coli hemY prote 98.3 1.2E-05 2.6E-10 86.8 16.1 125 61-222 91-217 (409)
118 PF14938 SNAP: Soluble NSF att 98.3 4.2E-06 9.1E-11 86.1 11.6 137 56-224 37-187 (282)
119 KOG0624 dsRNA-activated protei 98.3 3.1E-06 6.7E-11 89.1 9.8 104 86-226 36-140 (504)
120 PF13525 YfiO: Outer membrane 98.3 1.7E-05 3.6E-10 78.0 14.0 137 56-226 7-175 (203)
121 KOG0543 FKBP-type peptidyl-pro 98.3 1E-05 2.2E-10 86.8 13.1 125 63-224 217-358 (397)
122 KOG1128 Uncharacterized conser 98.3 5.6E-06 1.2E-10 93.6 11.6 123 67-226 498-621 (777)
123 PRK10866 outer membrane biogen 98.2 6.4E-05 1.4E-09 76.3 18.0 132 59-227 37-210 (243)
124 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 2.4E-05 5.2E-10 84.9 15.1 113 65-217 180-293 (395)
125 PLN03098 LPA1 LOW PSII ACCUMUL 98.2 9.2E-06 2E-10 88.7 10.9 70 83-189 70-142 (453)
126 KOG4162 Predicted calmodulin-b 98.2 0.00011 2.4E-09 83.9 19.6 177 51-227 475-755 (799)
127 PF09976 TPR_21: Tetratricopep 98.2 2.3E-05 5E-10 72.6 11.9 89 60-186 54-145 (145)
128 KOG2003 TPR repeat-containing 98.1 3.7E-05 8.1E-10 83.3 14.0 156 68-226 470-626 (840)
129 KOG1127 TPR repeat-containing 98.1 1.4E-05 3.1E-10 92.7 11.5 162 52-222 490-660 (1238)
130 PRK15331 chaperone protein Sic 98.1 3.4E-05 7.4E-10 74.2 11.6 105 61-203 44-148 (165)
131 PLN03081 pentatricopeptide (PP 98.1 8E-05 1.7E-09 85.7 16.2 170 54-226 325-528 (697)
132 KOG1128 Uncharacterized conser 98.0 4E-05 8.7E-10 86.9 12.8 153 65-227 435-588 (777)
133 PF14938 SNAP: Soluble NSF att 98.0 7.8E-05 1.7E-09 76.8 14.1 146 67-247 87-247 (282)
134 PF13371 TPR_9: Tetratricopept 98.0 1.8E-05 4E-10 63.9 7.5 64 94-194 1-64 (73)
135 PF04733 Coatomer_E: Coatomer 98.0 0.00012 2.7E-09 76.3 15.5 156 60-226 108-270 (290)
136 PF06552 TOM20_plant: Plant sp 98.0 5.1E-05 1.1E-09 73.9 11.5 95 70-194 7-115 (186)
137 KOG0495 HAT repeat protein [RN 98.0 0.00025 5.4E-09 80.0 18.1 182 44-225 641-884 (913)
138 KOG2376 Signal recognition par 98.0 0.00017 3.7E-09 80.4 16.7 69 158-226 174-258 (652)
139 PLN03081 pentatricopeptide (PP 98.0 0.0002 4.4E-09 82.3 18.0 52 57-111 262-313 (697)
140 PF12569 NARP1: NMDA receptor- 98.0 0.00018 3.9E-09 80.7 16.9 65 161-225 196-261 (517)
141 PRK14720 transcript cleavage f 98.0 0.00016 3.6E-09 85.2 16.6 154 42-203 104-268 (906)
142 PF13525 YfiO: Outer membrane 98.0 0.00015 3.3E-09 71.2 14.0 123 87-243 4-141 (203)
143 PRK10866 outer membrane biogen 98.0 0.00017 3.7E-09 73.3 14.5 120 87-243 31-175 (243)
144 KOG0495 HAT repeat protein [RN 97.9 0.00094 2E-08 75.5 21.1 186 40-226 536-753 (913)
145 PLN03218 maturation of RBCL 1; 97.9 0.0006 1.3E-08 82.5 21.3 62 159-220 684-747 (1060)
146 KOG1156 N-terminal acetyltrans 97.9 8E-05 1.7E-09 83.6 12.8 125 64-225 17-142 (700)
147 COG1729 Uncharacterized protei 97.9 7.6E-05 1.7E-09 76.7 11.5 99 91-226 144-249 (262)
148 PF14559 TPR_19: Tetratricopep 97.9 7.2E-05 1.6E-09 59.6 8.9 50 65-114 2-51 (68)
149 PLN03218 maturation of RBCL 1; 97.9 0.00096 2.1E-08 80.7 21.7 60 161-220 581-642 (1060)
150 COG1729 Uncharacterized protei 97.9 0.00013 2.9E-09 74.9 12.4 104 57-194 144-250 (262)
151 KOG4340 Uncharacterized conser 97.9 0.00022 4.8E-09 74.4 13.6 157 65-221 21-207 (459)
152 PF12688 TPR_5: Tetratrico pep 97.9 6.8E-05 1.5E-09 68.6 8.8 67 160-226 2-72 (120)
153 PLN03077 Protein ECB2; Provisi 97.8 0.00088 1.9E-08 78.9 20.0 45 63-111 533-577 (857)
154 KOG4648 Uncharacterized conser 97.8 3.8E-05 8.2E-10 81.1 7.2 98 91-225 100-198 (536)
155 PF13428 TPR_14: Tetratricopep 97.8 3.7E-05 7.9E-10 57.5 5.1 41 160-200 2-43 (44)
156 COG4700 Uncharacterized protei 97.8 0.00067 1.4E-08 66.9 15.0 147 67-221 69-222 (251)
157 PF13512 TPR_18: Tetratricopep 97.8 0.00034 7.4E-09 65.9 12.5 105 88-226 10-133 (142)
158 PF00515 TPR_1: Tetratricopept 97.8 4.6E-05 9.9E-10 53.3 4.6 33 160-192 2-34 (34)
159 PLN03077 Protein ECB2; Provisi 97.8 0.0014 3.1E-08 77.2 19.9 64 158-221 553-618 (857)
160 KOG1130 Predicted G-alpha GTPa 97.7 4.4E-05 9.6E-10 82.1 6.3 54 69-122 170-229 (639)
161 COG4235 Cytochrome c biogenesi 97.7 0.00047 1E-08 71.7 13.1 114 46-194 148-262 (287)
162 KOG3785 Uncharacterized conser 97.7 0.00083 1.8E-08 71.5 14.8 148 63-226 66-219 (557)
163 PF13431 TPR_17: Tetratricopep 97.7 3.4E-05 7.5E-10 55.1 3.1 33 181-213 1-34 (34)
164 COG0457 NrfG FOG: TPR repeat [ 97.7 0.0067 1.5E-07 53.6 18.4 66 158-223 201-267 (291)
165 KOG1156 N-terminal acetyltrans 97.7 0.00083 1.8E-08 75.7 15.0 138 49-223 36-174 (700)
166 PF07719 TPR_2: Tetratricopept 97.6 0.00011 2.5E-09 50.8 5.2 33 160-192 2-34 (34)
167 PRK11906 transcriptional regul 97.6 0.0005 1.1E-08 75.5 12.7 115 69-220 319-435 (458)
168 KOG3060 Uncharacterized conser 97.6 0.0016 3.5E-08 66.7 15.1 124 64-198 96-231 (289)
169 PRK04841 transcriptional regul 97.6 0.0016 3.4E-08 76.6 16.9 158 62-224 460-644 (903)
170 PF06552 TOM20_plant: Plant sp 97.6 0.00023 4.9E-09 69.5 8.3 74 152-225 18-113 (186)
171 KOG4648 Uncharacterized conser 97.6 5E-05 1.1E-09 80.2 4.0 106 162-267 100-210 (536)
172 KOG4234 TPR repeat-containing 97.6 0.00026 5.6E-09 70.4 8.2 104 91-226 98-202 (271)
173 PF13431 TPR_17: Tetratricopep 97.5 7.6E-05 1.6E-09 53.4 3.1 34 76-109 1-34 (34)
174 PRK10153 DNA-binding transcrip 97.5 0.00066 1.4E-08 76.3 12.1 87 70-194 400-488 (517)
175 PF13512 TPR_18: Tetratricopep 97.5 0.0014 3E-08 61.9 12.2 105 53-194 9-134 (142)
176 KOG4555 TPR repeat-containing 97.5 0.00098 2.1E-08 62.5 10.9 102 60-194 49-150 (175)
177 PF04733 Coatomer_E: Coatomer 97.5 0.00019 4.1E-09 74.9 7.0 148 69-226 81-235 (290)
178 COG0457 NrfG FOG: TPR repeat [ 97.4 0.0076 1.6E-07 53.3 15.3 63 161-223 169-233 (291)
179 KOG4234 TPR repeat-containing 97.4 0.0013 2.8E-08 65.5 11.3 97 61-194 102-203 (271)
180 PRK04841 transcriptional regul 97.4 0.0032 7E-08 74.0 16.0 129 62-193 499-646 (903)
181 KOG4642 Chaperone-dependent E3 97.3 0.00053 1.1E-08 69.7 7.5 73 151-223 36-109 (284)
182 KOG4555 TPR repeat-containing 97.3 0.0016 3.5E-08 61.1 10.1 94 92-222 47-145 (175)
183 COG4105 ComL DNA uptake lipopr 97.3 0.017 3.8E-07 59.3 17.5 168 56-224 36-235 (254)
184 PF03704 BTAD: Bacterial trans 97.2 0.0032 6.9E-08 57.8 10.8 64 160-223 63-127 (146)
185 PF04184 ST7: ST7 protein; In 97.2 0.0044 9.6E-08 68.6 13.5 141 63-219 177-322 (539)
186 KOG2796 Uncharacterized conser 97.2 0.0046 1E-07 63.9 12.5 129 67-226 190-320 (366)
187 PF13181 TPR_8: Tetratricopept 97.2 0.00065 1.4E-08 47.2 4.3 33 160-192 2-34 (34)
188 COG3071 HemY Uncharacterized e 97.1 0.055 1.2E-06 58.5 20.0 70 157-226 261-362 (400)
189 PF10300 DUF3808: Protein of u 97.0 0.01 2.2E-07 66.0 14.5 124 67-223 246-378 (468)
190 PF12569 NARP1: NMDA receptor- 97.0 0.014 3.1E-07 65.7 15.5 127 61-224 201-337 (517)
191 KOG1127 TPR repeat-containing 97.0 0.0032 6.9E-08 74.0 10.0 120 64-220 572-692 (1238)
192 PF09295 ChAPs: ChAPs (Chs5p-A 97.0 0.0093 2E-07 65.0 13.1 87 60-183 206-292 (395)
193 KOG0545 Aryl-hydrocarbon recep 96.9 0.0062 1.3E-07 62.4 10.5 117 89-224 179-296 (329)
194 PF00515 TPR_1: Tetratricopept 96.9 0.0015 3.2E-08 45.5 4.3 31 195-225 4-34 (34)
195 PF07719 TPR_2: Tetratricopept 96.9 0.0021 4.6E-08 44.3 5.0 31 195-225 4-34 (34)
196 COG3118 Thioredoxin domain-con 96.9 0.049 1.1E-06 57.1 16.8 49 63-111 143-191 (304)
197 PF13176 TPR_7: Tetratricopept 96.8 0.002 4.3E-08 46.3 4.4 28 161-188 1-28 (36)
198 COG4785 NlpI Lipoprotein NlpI, 96.8 0.0029 6.2E-08 63.9 6.8 76 151-226 91-167 (297)
199 KOG2053 Mitochondrial inherita 96.8 0.016 3.5E-07 67.7 13.8 124 65-226 20-144 (932)
200 KOG2376 Signal recognition par 96.8 0.048 1E-06 61.5 16.9 150 62-223 20-206 (652)
201 KOG3081 Vesicle coat complex C 96.6 0.46 1E-05 49.5 21.4 69 158-226 206-276 (299)
202 KOG1941 Acetylcholine receptor 96.5 0.011 2.4E-07 63.4 9.3 132 65-223 133-277 (518)
203 PF13174 TPR_6: Tetratricopept 96.5 0.0047 1E-07 42.1 4.3 32 161-192 2-33 (33)
204 KOG3785 Uncharacterized conser 96.4 0.0093 2E-07 63.8 7.8 126 64-226 32-185 (557)
205 COG4785 NlpI Lipoprotein NlpI, 96.4 0.019 4.2E-07 58.0 9.3 121 69-227 80-202 (297)
206 KOG0376 Serine-threonine phosp 96.3 0.0051 1.1E-07 67.7 5.4 95 63-194 13-107 (476)
207 smart00028 TPR Tetratricopepti 96.3 0.0059 1.3E-07 39.0 3.7 32 161-192 3-34 (34)
208 KOG0376 Serine-threonine phosp 96.3 0.0064 1.4E-07 66.9 5.8 91 151-244 30-121 (476)
209 COG4700 Uncharacterized protei 96.3 0.11 2.3E-06 51.8 13.6 70 155-224 120-192 (251)
210 COG4105 ComL DNA uptake lipopr 96.2 0.05 1.1E-06 55.9 11.5 101 156-256 31-150 (254)
211 KOG4642 Chaperone-dependent E3 96.1 0.012 2.6E-07 60.1 6.7 89 64-189 20-108 (284)
212 COG2976 Uncharacterized protei 96.1 0.1 2.3E-06 51.9 12.9 121 67-224 66-191 (207)
213 PF13428 TPR_14: Tetratricopep 96.0 0.011 2.4E-07 44.0 4.5 32 195-226 4-35 (44)
214 KOG1308 Hsp70-interacting prot 96.0 0.0055 1.2E-07 65.1 3.7 72 152-223 141-213 (377)
215 PF13181 TPR_8: Tetratricopept 96.0 0.014 3.1E-07 40.3 4.5 30 195-224 4-33 (34)
216 PF13374 TPR_10: Tetratricopep 95.9 0.016 3.4E-07 41.4 4.7 28 161-188 4-31 (42)
217 PF12968 DUF3856: Domain of Un 95.9 0.1 2.2E-06 48.4 10.8 100 62-187 17-128 (144)
218 COG3898 Uncharacterized membra 95.9 0.34 7.4E-06 52.8 16.3 198 49-258 113-331 (531)
219 KOG1585 Protein required for f 95.7 0.25 5.4E-06 51.0 13.9 135 54-220 31-178 (308)
220 PRK10941 hypothetical protein; 95.6 0.11 2.4E-06 54.0 11.2 66 161-226 183-249 (269)
221 KOG3617 WD40 and TPR repeat-co 95.6 0.3 6.6E-06 57.2 15.4 155 50-220 796-995 (1416)
222 KOG1585 Protein required for f 95.4 0.31 6.7E-06 50.3 13.1 103 92-225 35-143 (308)
223 KOG0551 Hsp90 co-chaperone CNS 95.3 0.12 2.5E-06 55.2 10.4 100 90-223 83-184 (390)
224 KOG1586 Protein required for f 95.3 0.47 1E-05 48.7 14.1 65 161-225 115-187 (288)
225 PF13281 DUF4071: Domain of un 95.3 0.67 1.4E-05 50.5 16.2 64 155-218 213-285 (374)
226 KOG1941 Acetylcholine receptor 95.2 0.055 1.2E-06 58.2 7.5 62 161-222 164-236 (518)
227 COG2976 Uncharacterized protei 95.2 0.28 6E-06 48.9 11.9 93 63-194 98-194 (207)
228 KOG1915 Cell cycle control pro 95.2 0.95 2.1E-05 50.5 16.9 161 56-223 75-238 (677)
229 KOG2796 Uncharacterized conser 95.2 0.18 3.8E-06 52.6 10.8 123 43-202 199-333 (366)
230 KOG1308 Hsp70-interacting prot 95.1 0.011 2.4E-07 62.8 2.3 71 150-220 173-243 (377)
231 PF13174 TPR_6: Tetratricopept 95.1 0.034 7.4E-07 37.8 3.8 30 195-224 3-32 (33)
232 PF13176 TPR_7: Tetratricopept 95.1 0.043 9.3E-07 39.3 4.4 29 195-223 2-30 (36)
233 KOG2471 TPR repeat-containing 95.0 0.081 1.8E-06 58.8 8.4 131 65-226 217-369 (696)
234 PF05843 Suf: Suppressor of fo 95.0 0.36 7.7E-06 50.0 12.8 123 66-225 13-140 (280)
235 KOG2471 TPR repeat-containing 94.9 0.061 1.3E-06 59.7 7.1 122 64-204 250-381 (696)
236 KOG1070 rRNA processing protei 94.6 2.4 5.3E-05 52.5 19.6 42 41-82 1444-1486(1710)
237 COG3118 Thioredoxin domain-con 94.6 1.2 2.6E-05 46.9 15.3 43 182-224 225-268 (304)
238 KOG3617 WD40 and TPR repeat-co 94.6 0.46 1E-05 55.8 13.1 109 64-188 868-996 (1416)
239 KOG1586 Protein required for f 94.5 4.1 8.9E-05 42.1 18.4 171 49-226 29-229 (288)
240 PF13374 TPR_10: Tetratricopep 94.5 0.064 1.4E-06 38.1 4.2 32 195-226 5-36 (42)
241 PF14853 Fis1_TPR_C: Fis1 C-te 94.4 0.12 2.6E-06 40.9 5.9 34 161-194 3-36 (53)
242 PF09986 DUF2225: Uncharacteri 94.4 0.78 1.7E-05 46.1 13.2 63 160-222 119-195 (214)
243 KOG3081 Vesicle coat complex C 94.4 1.4 3E-05 46.1 14.9 70 157-226 167-241 (299)
244 COG3898 Uncharacterized membra 94.4 3 6.5E-05 45.8 18.0 154 65-225 165-328 (531)
245 smart00028 TPR Tetratricopepti 94.4 0.066 1.4E-06 33.9 3.7 30 195-224 4-33 (34)
246 KOG2047 mRNA splicing factor [ 94.0 1.1 2.5E-05 51.5 14.6 167 57-223 390-581 (835)
247 KOG4507 Uncharacterized conser 94.0 0.11 2.4E-06 58.7 6.5 100 92-228 610-712 (886)
248 PF04184 ST7: ST7 protein; In 93.8 0.84 1.8E-05 51.2 13.0 121 69-226 215-380 (539)
249 KOG0545 Aryl-hydrocarbon recep 93.8 0.74 1.6E-05 47.7 11.6 96 62-194 186-299 (329)
250 KOG1070 rRNA processing protei 93.7 1.6 3.6E-05 53.9 15.9 143 73-224 1443-1596(1710)
251 KOG1915 Cell cycle control pro 93.6 8.6 0.00019 43.3 19.9 74 151-224 314-398 (677)
252 COG0790 FOG: TPR repeat, SEL1 93.5 2.4 5.2E-05 43.3 15.2 147 67-222 90-267 (292)
253 PF10300 DUF3808: Protein of u 93.5 0.52 1.1E-05 52.6 10.9 112 43-190 256-378 (468)
254 PF05843 Suf: Suppressor of fo 93.2 0.37 8E-06 50.0 8.5 68 157-224 33-102 (280)
255 PF14561 TPR_20: Tetratricopep 93.1 0.52 1.1E-05 41.0 8.1 47 179-225 8-55 (90)
256 KOG2610 Uncharacterized conser 93.0 3.7 8E-05 44.4 15.5 64 155-218 168-235 (491)
257 PF14561 TPR_20: Tetratricopep 93.0 0.5 1.1E-05 41.1 7.8 67 151-217 14-83 (90)
258 PF14853 Fis1_TPR_C: Fis1 C-te 92.9 0.19 4.2E-06 39.7 4.6 32 195-226 4-35 (53)
259 PF02259 FAT: FAT domain; Int 92.9 5.6 0.00012 41.1 16.9 164 54-220 30-212 (352)
260 PF03704 BTAD: Bacterial trans 92.8 0.55 1.2E-05 43.0 8.3 91 60-187 12-124 (146)
261 KOG4340 Uncharacterized conser 92.5 2.2 4.8E-05 45.4 13.0 52 59-110 149-200 (459)
262 KOG3824 Huntingtin interacting 92.5 0.36 7.9E-06 51.2 7.3 67 161-227 118-185 (472)
263 PF04910 Tcf25: Transcriptiona 92.5 4.3 9.3E-05 43.9 15.8 52 67-126 23-74 (360)
264 KOG4507 Uncharacterized conser 91.9 0.29 6.4E-06 55.5 6.1 62 163-224 610-674 (886)
265 PF02259 FAT: FAT domain; Int 91.9 5.4 0.00012 41.2 15.3 144 57-205 149-305 (352)
266 COG2909 MalT ATP-dependent tra 91.8 9.6 0.00021 45.5 18.3 190 27-224 427-650 (894)
267 PF09986 DUF2225: Uncharacteri 91.7 1.5 3.2E-05 44.1 10.4 109 69-202 92-210 (214)
268 PF09613 HrpB1_HrpK: Bacterial 91.5 1.4 3.1E-05 42.5 9.7 70 153-223 38-108 (160)
269 KOG3616 Selective LIM binding 91.5 1.3 2.8E-05 51.6 10.7 59 55-113 662-731 (1636)
270 KOG2053 Mitochondrial inherita 91.5 12 0.00026 44.8 18.6 179 47-225 36-259 (932)
271 COG4976 Predicted methyltransf 91.3 0.26 5.5E-06 50.5 4.5 60 168-227 4-64 (287)
272 PF07079 DUF1347: Protein of u 91.3 2.7 5.9E-05 46.8 12.5 127 91-221 9-157 (549)
273 PF07079 DUF1347: Protein of u 90.9 5 0.00011 44.8 14.1 60 158-217 459-520 (549)
274 PF12862 Apc5: Anaphase-promot 90.8 1.1 2.5E-05 38.7 7.6 57 169-225 8-74 (94)
275 KOG1839 Uncharacterized protei 90.8 1.1 2.5E-05 54.8 9.9 140 58-226 936-1091(1236)
276 KOG2047 mRNA splicing factor [ 90.5 4.5 9.7E-05 46.9 13.6 157 62-223 355-542 (835)
277 PF12968 DUF3856: Domain of Un 90.1 8 0.00017 36.2 12.6 61 161-221 57-129 (144)
278 KOG2610 Uncharacterized conser 90.1 3.9 8.5E-05 44.2 12.0 154 65-220 114-275 (491)
279 KOG1550 Extracellular protein 89.5 6.8 0.00015 44.7 14.4 66 155-222 321-394 (552)
280 PF08631 SPO22: Meiosis protei 88.9 13 0.00029 38.3 15.0 130 64-221 3-150 (278)
281 TIGR03504 FimV_Cterm FimV C-te 88.6 1.2 2.5E-05 34.1 5.1 41 196-244 3-43 (44)
282 KOG0551 Hsp90 co-chaperone CNS 88.5 1.6 3.4E-05 46.9 7.8 89 161-249 83-180 (390)
283 PF04053 Coatomer_WDAD: Coatom 88.4 7.5 0.00016 43.4 13.4 129 62-220 269-401 (443)
284 PF07721 TPR_4: Tetratricopept 88.2 0.55 1.2E-05 31.3 2.8 23 161-183 3-25 (26)
285 KOG3364 Membrane protein invol 88.2 1.8 3.8E-05 41.1 7.1 67 160-226 33-105 (149)
286 PF12862 Apc5: Anaphase-promot 88.0 2 4.4E-05 37.1 7.0 35 160-194 42-76 (94)
287 COG3629 DnrI DNA-binding trans 87.5 4.3 9.3E-05 42.7 10.3 71 157-227 151-222 (280)
288 KOG3616 Selective LIM binding 87.4 4.3 9.2E-05 47.6 10.8 140 57-196 840-1032(1636)
289 PF10602 RPN7: 26S proteasome 87.3 3.4 7.3E-05 40.2 8.8 101 88-222 36-143 (177)
290 PF13281 DUF4071: Domain of un 86.8 10 0.00022 41.5 13.0 149 67-248 195-357 (374)
291 PF09613 HrpB1_HrpK: Bacterial 86.4 3.8 8.2E-05 39.7 8.5 67 160-226 11-78 (160)
292 KOG3824 Huntingtin interacting 86.0 2.2 4.7E-05 45.6 7.1 52 65-116 127-178 (472)
293 COG3914 Spy Predicted O-linked 85.9 9.6 0.00021 43.7 12.5 76 151-226 93-176 (620)
294 PF07720 TPR_3: Tetratricopept 85.7 2.3 5E-05 31.0 5.1 32 161-192 3-36 (36)
295 PF10602 RPN7: 26S proteasome 85.4 4.1 8.8E-05 39.6 8.3 64 160-223 37-104 (177)
296 COG4649 Uncharacterized protei 85.4 43 0.00092 33.5 15.3 143 62-247 66-216 (221)
297 KOG3807 Predicted membrane pro 85.3 41 0.00089 36.6 16.1 141 63-220 193-339 (556)
298 PF07721 TPR_4: Tetratricopept 84.2 1.3 2.7E-05 29.5 3.0 23 195-217 4-26 (26)
299 PF08424 NRDE-2: NRDE-2, neces 83.2 33 0.00072 36.3 14.7 149 75-223 6-185 (321)
300 TIGR02561 HrpB1_HrpK type III 82.6 7.7 0.00017 37.3 8.6 56 154-209 39-95 (153)
301 PF10579 Rapsyn_N: Rapsyn N-te 82.4 5.5 0.00012 34.4 6.8 59 163-221 10-72 (80)
302 PF10516 SHNi-TPR: SHNi-TPR; 82.1 2.1 4.5E-05 31.7 3.6 29 161-189 3-31 (38)
303 PF10373 EST1_DNA_bind: Est1 D 81.0 3.2 6.9E-05 41.7 5.9 55 150-204 7-62 (278)
304 PF11207 DUF2989: Protein of u 80.9 6.3 0.00014 39.6 7.7 66 43-108 128-198 (203)
305 KOG2300 Uncharacterized conser 80.7 1.1E+02 0.0024 34.9 21.6 66 161-226 447-519 (629)
306 COG2912 Uncharacterized conser 80.6 5.5 0.00012 41.6 7.4 66 161-226 183-249 (269)
307 KOG2422 Uncharacterized conser 80.5 1.2E+02 0.0026 35.3 18.1 152 69-224 253-451 (665)
308 PRK10941 hypothetical protein; 80.0 9.5 0.0002 39.8 9.0 68 90-194 183-250 (269)
309 COG4976 Predicted methyltransf 79.6 2.5 5.3E-05 43.6 4.4 44 151-194 21-64 (287)
310 KOG1464 COP9 signalosome, subu 79.5 56 0.0012 34.8 14.2 51 65-115 38-92 (440)
311 KOG0530 Protein farnesyltransf 78.1 74 0.0016 33.7 14.5 128 56-222 47-177 (318)
312 PF04190 DUF410: Protein of un 77.8 90 0.002 32.2 16.1 65 157-221 88-170 (260)
313 KOG3783 Uncharacterized conser 77.7 1.2E+02 0.0026 34.8 17.1 64 161-224 451-523 (546)
314 COG0790 FOG: TPR repeat, SEL1 77.6 58 0.0013 33.1 13.9 115 66-221 53-184 (292)
315 KOG2300 Uncharacterized conser 77.0 24 0.00052 40.0 11.3 55 161-215 90-150 (629)
316 PF11207 DUF2989: Protein of u 76.3 9.4 0.0002 38.4 7.3 55 157-212 139-198 (203)
317 KOG2041 WD40 repeat protein [G 75.8 53 0.0012 38.9 13.8 113 89-218 797-936 (1189)
318 KOG1310 WD40 repeat protein [G 75.6 7.7 0.00017 44.2 7.1 96 65-194 385-480 (758)
319 PF08424 NRDE-2: NRDE-2, neces 75.4 22 0.00047 37.7 10.4 76 151-226 11-99 (321)
320 COG3914 Spy Predicted O-linked 75.1 25 0.00054 40.5 11.1 56 152-207 129-191 (620)
321 PF10579 Rapsyn_N: Rapsyn N-te 75.0 14 0.0003 32.0 7.0 58 60-117 12-72 (80)
322 PF04910 Tcf25: Transcriptiona 74.1 18 0.0004 39.1 9.6 75 152-226 33-138 (360)
323 TIGR02561 HrpB1_HrpK type III 73.8 12 0.00026 36.1 7.0 64 161-224 12-76 (153)
324 KOG3364 Membrane protein invol 73.6 37 0.00081 32.4 10.1 35 160-194 72-106 (149)
325 KOG2581 26S proteasome regulat 73.1 83 0.0018 35.1 13.9 66 160-225 210-280 (493)
326 PF07720 TPR_3: Tetratricopept 72.0 11 0.00023 27.5 4.9 31 195-225 4-36 (36)
327 COG4649 Uncharacterized protei 71.3 84 0.0018 31.5 12.3 109 58-203 98-211 (221)
328 COG2909 MalT ATP-dependent tra 71.2 1E+02 0.0022 37.4 15.1 60 164-223 463-528 (894)
329 TIGR03362 VI_chp_7 type VI sec 70.8 1.4E+02 0.0031 31.7 15.1 153 66-223 111-281 (301)
330 PF09205 DUF1955: Domain of un 70.3 27 0.00059 33.4 8.4 61 161-221 87-149 (161)
331 KOG4814 Uncharacterized conser 70.2 32 0.00069 40.2 10.4 65 158-222 393-458 (872)
332 KOG2041 WD40 repeat protein [G 70.1 65 0.0014 38.2 12.8 58 160-217 797-877 (1189)
333 PF12854 PPR_1: PPR repeat 69.9 8.5 0.00018 27.2 4.0 22 195-216 10-31 (34)
334 KOG2396 HAT (Half-A-TPR) repea 69.6 23 0.0005 40.2 9.0 73 154-226 100-174 (568)
335 KOG4814 Uncharacterized conser 69.5 19 0.00042 41.9 8.6 67 160-226 355-428 (872)
336 PF04781 DUF627: Protein of un 69.4 20 0.00043 32.8 7.2 45 177-221 62-107 (111)
337 TIGR03504 FimV_Cterm FimV C-te 68.0 8.4 0.00018 29.4 3.8 25 163-187 3-27 (44)
338 PRK13184 pknD serine/threonine 67.6 19 0.00042 43.8 8.6 129 64-226 485-625 (932)
339 COG3947 Response regulator con 66.9 19 0.00041 38.5 7.3 61 161-221 281-342 (361)
340 PF10255 Paf67: RNA polymerase 66.3 11 0.00023 41.8 5.6 58 163-220 126-192 (404)
341 PF10255 Paf67: RNA polymerase 65.8 11 0.00025 41.5 5.8 69 90-187 124-192 (404)
342 PF00244 14-3-3: 14-3-3 protei 65.8 1.6E+02 0.0035 30.0 16.4 47 175-221 142-198 (236)
343 KOG0985 Vesicle coat protein c 65.1 1.9E+02 0.0042 36.0 15.6 65 161-225 1222-1312(1666)
344 PF11846 DUF3366: Domain of un 64.7 19 0.00041 34.9 6.6 50 175-224 127-176 (193)
345 KOG0985 Vesicle coat protein c 64.4 1.3E+02 0.0027 37.5 14.0 114 88-218 1104-1220(1666)
346 cd02682 MIT_AAA_Arch MIT: doma 64.1 41 0.00088 28.7 7.5 25 161-185 8-32 (75)
347 PRK15180 Vi polysaccharide bio 63.0 40 0.00086 38.3 9.2 133 62-197 297-430 (831)
348 PF12854 PPR_1: PPR repeat 63.0 14 0.00031 26.0 4.0 26 159-184 7-32 (34)
349 COG4455 ImpE Protein of avirul 62.9 54 0.0012 33.9 9.4 61 166-226 8-69 (273)
350 KOG1550 Extracellular protein 62.1 1.5E+02 0.0032 34.0 14.1 141 69-221 271-426 (552)
351 KOG0890 Protein kinase of the 60.8 2E+02 0.0044 38.5 15.8 67 157-225 1668-1735(2382)
352 PF13041 PPR_2: PPR repeat fam 60.7 26 0.00057 26.2 5.4 35 160-194 4-40 (50)
353 PF08631 SPO22: Meiosis protei 60.1 47 0.001 34.3 8.9 52 170-221 4-65 (278)
354 KOG0276 Vesicle coat complex C 60.0 57 0.0012 38.0 9.9 108 89-218 615-747 (794)
355 PF10373 EST1_DNA_bind: Est1 D 59.0 24 0.00052 35.4 6.4 45 178-222 1-46 (278)
356 PF11817 Foie-gras_1: Foie gra 58.6 80 0.0017 32.1 10.1 59 161-219 180-245 (247)
357 PF10345 Cohesin_load: Cohesin 57.2 1.5E+02 0.0034 34.1 13.3 65 159-223 404-481 (608)
358 KOG1310 WD40 repeat protein [G 56.7 22 0.00047 40.7 5.9 74 153-226 402-479 (758)
359 PF10952 DUF2753: Protein of u 56.2 46 0.001 31.4 7.0 84 162-245 4-109 (140)
360 KOG1258 mRNA processing protei 54.9 1.7E+02 0.0036 34.0 12.6 113 65-213 308-421 (577)
361 PF01535 PPR: PPR repeat; Int 54.9 18 0.00038 23.6 3.2 26 162-187 3-28 (31)
362 PF10516 SHNi-TPR: SHNi-TPR; 54.8 23 0.00049 26.3 3.9 30 195-224 4-33 (38)
363 smart00386 HAT HAT (Half-A-TPR 54.0 33 0.00071 22.3 4.5 28 173-200 1-29 (33)
364 PF13041 PPR_2: PPR repeat fam 52.8 30 0.00064 25.9 4.5 31 191-221 2-32 (50)
365 TIGR00756 PPR pentatricopeptid 50.9 30 0.00065 22.8 3.9 26 162-187 3-28 (35)
366 COG3629 DnrI DNA-binding trans 50.7 57 0.0012 34.5 7.6 38 151-188 179-216 (280)
367 KOG3807 Predicted membrane pro 50.5 42 0.00091 36.6 6.6 71 151-223 210-306 (556)
368 PF15015 NYD-SP12_N: Spermatog 50.2 59 0.0013 36.5 7.8 61 161-221 230-291 (569)
369 PF04781 DUF627: Protein of un 50.0 1.7E+02 0.0038 26.8 9.7 101 63-189 5-108 (111)
370 cd02682 MIT_AAA_Arch MIT: doma 49.6 83 0.0018 26.9 7.1 24 91-114 9-32 (75)
371 KOG1497 COP9 signalosome, subu 49.2 1.2E+02 0.0026 33.0 9.7 103 89-221 104-213 (399)
372 PF09670 Cas_Cas02710: CRISPR- 49.1 3.9E+02 0.0084 29.2 14.2 55 62-116 139-197 (379)
373 KOG2396 HAT (Half-A-TPR) repea 48.0 1.9E+02 0.0042 33.1 11.5 44 151-194 131-175 (568)
374 COG5191 Uncharacterized conser 47.2 32 0.00069 37.2 5.1 73 155-227 103-177 (435)
375 KOG2581 26S proteasome regulat 46.6 4.7E+02 0.01 29.5 14.0 124 65-194 137-282 (493)
376 KOG0687 26S proteasome regulat 46.6 2.7E+02 0.0058 30.5 11.8 30 88-117 104-133 (393)
377 PF04053 Coatomer_WDAD: Coatom 44.9 2.7E+02 0.0059 31.2 12.3 27 88-114 347-373 (443)
378 PF04212 MIT: MIT (microtubule 44.4 39 0.00085 27.4 4.3 26 161-186 7-32 (69)
379 PF01535 PPR: PPR repeat; Int 44.1 35 0.00076 22.2 3.3 26 195-220 3-28 (31)
380 PF10345 Cohesin_load: Cohesin 41.9 6E+02 0.013 29.3 15.8 121 66-221 72-208 (608)
381 KOG1538 Uncharacterized conser 41.6 1.8E+02 0.0039 34.5 10.2 17 94-110 638-654 (1081)
382 KOG1839 Uncharacterized protei 40.6 90 0.002 39.1 8.2 133 65-226 984-1133(1236)
383 cd02681 MIT_calpain7_1 MIT: do 40.4 51 0.0011 28.0 4.5 25 162-186 9-33 (76)
384 PRK11619 lytic murein transgly 40.3 3.2E+02 0.0069 32.2 12.4 140 62-219 320-466 (644)
385 TIGR00756 PPR pentatricopeptid 40.2 60 0.0013 21.3 4.1 27 195-221 3-29 (35)
386 smart00386 HAT HAT (Half-A-TPR 39.4 73 0.0016 20.6 4.4 29 68-96 1-29 (33)
387 KOG0529 Protein geranylgeranyl 38.6 4.4E+02 0.0095 29.6 12.2 76 151-226 101-183 (421)
388 PF04190 DUF410: Protein of un 38.5 4.6E+02 0.0099 27.1 12.0 82 86-188 88-170 (260)
389 KOG0530 Protein farnesyltransf 38.4 3.8E+02 0.0082 28.6 11.1 109 65-227 37-148 (318)
390 cd02680 MIT_calpain7_2 MIT: do 38.0 59 0.0013 27.7 4.5 18 204-221 18-35 (75)
391 PF14863 Alkyl_sulf_dimr: Alky 38.0 90 0.002 29.6 6.2 48 161-208 72-120 (141)
392 cd02681 MIT_calpain7_1 MIT: do 37.2 53 0.0011 27.9 4.1 31 177-221 5-35 (76)
393 KOG0276 Vesicle coat complex C 36.5 2.3E+02 0.0051 33.3 10.0 79 88-183 666-745 (794)
394 PF13812 PPR_3: Pentatricopept 36.4 86 0.0019 20.8 4.4 27 161-187 3-29 (34)
395 cd02683 MIT_1 MIT: domain cont 35.9 54 0.0012 27.8 3.9 26 161-186 8-33 (77)
396 KOG0890 Protein kinase of the 35.2 4.1E+02 0.0088 35.9 12.8 54 59-114 1675-1728(2382)
397 KOG1914 mRNA cleavage and poly 34.4 1.6E+02 0.0035 34.1 8.3 68 152-220 13-81 (656)
398 COG5159 RPN6 26S proteasome re 34.1 6.4E+02 0.014 27.4 15.1 153 63-221 12-194 (421)
399 PF08238 Sel1: Sel1 repeat; I 32.1 96 0.0021 21.4 4.2 29 160-188 2-37 (39)
400 COG2912 Uncharacterized conser 31.5 1.1E+02 0.0024 32.2 6.1 44 151-194 207-250 (269)
401 PF11817 Foie-gras_1: Foie gra 31.2 2.5E+02 0.0054 28.6 8.6 53 172-224 151-210 (247)
402 PRK15180 Vi polysaccharide bio 30.9 2.1E+02 0.0045 32.9 8.3 105 155-259 319-428 (831)
403 KOG1920 IkappaB kinase complex 30.7 5.5E+02 0.012 32.5 12.4 58 163-220 956-1027(1265)
404 KOG2114 Vacuolar assembly/sort 30.4 3.5E+02 0.0077 32.9 10.5 29 88-116 368-396 (933)
405 KOG0686 COP9 signalosome, subu 30.3 2.6E+02 0.0057 31.4 8.9 61 159-219 187-256 (466)
406 PRK13184 pknD serine/threonine 29.7 1.4E+02 0.003 36.8 7.3 68 159-227 512-587 (932)
407 cd02683 MIT_1 MIT: domain cont 29.5 3.1E+02 0.0067 23.2 7.5 23 94-116 12-34 (77)
408 smart00671 SEL1 Sel1-like repe 28.9 94 0.002 20.9 3.7 28 161-188 3-34 (36)
409 COG4941 Predicted RNA polymera 28.9 8E+02 0.017 27.2 12.0 70 155-225 326-398 (415)
410 cd02678 MIT_VPS4 MIT: domain c 27.6 1.2E+02 0.0026 25.2 4.6 20 166-185 13-32 (75)
411 PF14689 SPOB_a: Sensor_kinase 27.5 1.2E+02 0.0027 24.4 4.6 26 195-220 26-51 (62)
412 PHA02537 M terminase endonucle 27.4 1.7E+02 0.0037 30.1 6.6 22 204-225 190-211 (230)
413 smart00745 MIT Microtubule Int 27.3 99 0.0022 25.4 4.1 23 164-186 13-35 (77)
414 PF11846 DUF3366: Domain of un 27.0 1.1E+02 0.0023 29.7 4.9 39 153-192 139-177 (193)
415 KOG1914 mRNA cleavage and poly 27.0 1.1E+03 0.023 27.8 15.7 55 167-221 409-464 (656)
416 PF10952 DUF2753: Protein of u 26.9 4E+02 0.0088 25.3 8.3 34 161-194 52-89 (140)
417 PF09205 DUF1955: Domain of un 26.8 3.2E+02 0.007 26.4 7.7 61 54-114 85-146 (161)
418 PF12921 ATP13: Mitochondrial 26.4 4.2E+02 0.0091 24.4 8.5 64 160-223 3-83 (126)
419 cd02679 MIT_spastin MIT: domai 26.4 1.1E+02 0.0023 26.4 4.2 17 204-220 20-36 (79)
420 cd02684 MIT_2 MIT: domain cont 26.1 1.2E+02 0.0026 25.5 4.5 33 175-221 3-35 (75)
421 PF09797 NatB_MDM20: N-acetylt 25.9 3.8E+02 0.0082 28.7 9.3 44 69-112 198-241 (365)
422 cd00280 TRFH Telomeric Repeat 25.5 5.6E+02 0.012 25.9 9.5 49 165-214 117-166 (200)
423 PF14863 Alkyl_sulf_dimr: Alky 25.5 1.4E+02 0.003 28.4 5.1 54 55-108 71-124 (141)
424 PF09670 Cas_Cas02710: CRISPR- 25.1 5.1E+02 0.011 28.3 10.2 60 162-221 134-198 (379)
425 PF09797 NatB_MDM20: N-acetylt 24.7 2.4E+02 0.0051 30.3 7.5 46 172-217 196-242 (365)
426 cd02656 MIT MIT: domain contai 24.3 1.2E+02 0.0027 24.9 4.1 24 163-186 10-33 (75)
427 COG5159 RPN6 26S proteasome re 23.6 4.9E+02 0.011 28.2 9.2 26 196-221 129-154 (421)
428 KOG0546 HSP90 co-chaperone CPR 23.6 39 0.00084 36.9 1.2 66 161-226 277-343 (372)
429 PF15015 NYD-SP12_N: Spermatog 23.5 3.3E+02 0.0072 30.8 8.2 85 65-186 187-289 (569)
430 PF00244 14-3-3: 14-3-3 protei 23.4 4.9E+02 0.011 26.5 9.1 62 162-223 4-68 (236)
431 cd02678 MIT_VPS4 MIT: domain c 22.8 1.3E+02 0.0029 24.9 4.1 33 175-221 3-35 (75)
432 PHA02537 M terminase endonucle 22.6 4.7E+02 0.01 26.9 8.7 34 161-194 171-213 (230)
433 COG3947 Response regulator con 21.7 2.9E+02 0.0064 29.9 7.1 50 62-111 287-336 (361)
434 PF02064 MAS20: MAS20 protein 20.5 1.4E+02 0.0031 27.6 4.1 32 163-194 67-98 (121)
435 KOG1538 Uncharacterized conser 20.4 3.4E+02 0.0074 32.4 7.7 48 167-218 781-830 (1081)
436 KOG4279 Serine/threonine prote 20.0 1.7E+02 0.0037 35.3 5.3 54 155-208 274-336 (1226)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.82 E-value=2.2e-19 Score=195.69 Aligned_cols=225 Identities=13% Similarity=0.084 Sum_probs=196.6
Q ss_pred hhhhhH-hhcCCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHH---------
Q 038048 41 GDIFHV-IHKVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEA--------- 110 (575)
Q Consensus 41 ae~y~~-~~~~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~--------- 110 (575)
.+.|-. +...|..-..+...+.+...+|+.-.|+..|++|++++|+..+||+|||++|...+.|++|+.+
T Consensus 204 ~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp 283 (966)
T KOG4626|consen 204 KACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRP 283 (966)
T ss_pred HHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC
Confidence 345554 4455556666777888888899999999999999999999999999999999999999999988
Q ss_pred --------------HhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHH
Q 038048 111 --------------RSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWA 168 (575)
Q Consensus 111 --------------~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~a 168 (575)
.+|.++.+|..+++.+...+.-...+.|++.++.+.|. ..++.+.|+++++++|||.+
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni 363 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNI 363 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 46777888999999998777777788999999999888 46799999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCC----hhHHHHHHHHHHHHH
Q 038048 169 YMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMD----TSYSRSFERAIQMLT 243 (575)
Q Consensus 169 Y~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~~----~~~l~slerA~elL~ 243 (575)
|.++|.+++|..+|++||++.|+... ..|||.+|..+|++++|+.+|+.+|.+.|.-..+ -..++.+++...++.
T Consensus 364 ~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q 443 (966)
T KOG4626|consen 364 YREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQ 443 (966)
T ss_pred HHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHH
Confidence 99999999999999999999999999 9999999999999999999999999999964321 134577788999999
Q ss_pred HhccccccCcccccccchhhhc
Q 038048 244 ELESPSVLKLTELEVGDDQKNQ 265 (575)
Q Consensus 244 ele~al~~~p~~~e~~~~~~~~ 265 (575)
.++.++.++|.+++.|.++..+
T Consensus 444 ~y~rAI~~nPt~AeAhsNLasi 465 (966)
T KOG4626|consen 444 CYTRAIQINPTFAEAHSNLASI 465 (966)
T ss_pred HHHHHHhcCcHHHHHHhhHHHH
Confidence 9999999999999988775443
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.78 E-value=1.1e-18 Score=190.15 Aligned_cols=220 Identities=18% Similarity=0.113 Sum_probs=172.6
Q ss_pred hhhHhhcCCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHH-----
Q 038048 43 IFHVIHKVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEE----- 117 (575)
Q Consensus 43 ~y~~~~~~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLee----- 117 (575)
.+..+...|..-..|.+.+.++--...+++|+..|.+|+.+.|+.+.++.|||.+|.++|..|-||..|.++++.
T Consensus 241 y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~ 320 (966)
T KOG4626|consen 241 YEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFP 320 (966)
T ss_pred HHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCch
Confidence 334455566677788888888877778888888888888888888888888888888888888888876555542
Q ss_pred ------------------HHHHHHHHHHhhHHHHHHHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHH
Q 038048 118 ------------------EIELLQNKLKNIEEGIAFAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQ 171 (575)
Q Consensus 118 ------------------Ai~lL~~~L~l~~~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~ 171 (575)
+...+...+.+-+.....+.|++.+++++|. ..++.+.|+.+.+++|||.+|.+
T Consensus 321 ~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kq 400 (966)
T KOG4626|consen 321 DAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQ 400 (966)
T ss_pred HHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHh
Confidence 2223333333333334567899999999988 45788899999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCChhH----HHHHHHHHHHHHHhc
Q 038048 172 QNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMDTSY----SRSFERAIQMLTELE 246 (575)
Q Consensus 172 qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~~~~~----l~slerA~elL~ele 246 (575)
+|++++|+.+|++||.|+|.++. +.|+|++|.++|+..+|+++|.+|+.++|.-.++... .+..+...+++...+
T Consensus 401 qgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~ 480 (966)
T KOG4626|consen 401 QGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYR 480 (966)
T ss_pred cccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHH
Confidence 99999999999999999999999 9999999999999999999999999999964321111 233345677888888
Q ss_pred cccccCcccccccchh
Q 038048 247 SPSVLKLTELEVGDDQ 262 (575)
Q Consensus 247 ~al~~~p~~~e~~~~~ 262 (575)
.++.++|++++.+.++
T Consensus 481 ~aLklkPDfpdA~cNl 496 (966)
T KOG4626|consen 481 TALKLKPDFPDAYCNL 496 (966)
T ss_pred HHHccCCCCchhhhHH
Confidence 8899999999776663
No 3
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.68 E-value=4e-16 Score=167.67 Aligned_cols=175 Identities=19% Similarity=0.164 Sum_probs=152.1
Q ss_pred CCCCCCCccccccCCCCCCCCCcCCCCcCccchhhhhhHhhcCCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc
Q 038048 8 NFSTPPPTWRKQRSLPSPLSERKRISTPENNKKGDIFHVIHKVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRV 87 (575)
Q Consensus 8 ~~~~~pp~~l~th~~~~Plse~r~~~~~~~r~Rae~y~~~~~~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~ 87 (575)
+|.+.||+|++|| |||++||++. ++|+++++.....++.++.+++++....+..........+.--. .++.-
T Consensus 234 ~~~~~~p~yl~TH----Plp~~RIa~l---r~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~ 305 (484)
T COG4783 234 RYGGQPPEYLLTH----PLPEERIADL---RNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKR-SKRGG 305 (484)
T ss_pred hcCCCCChHHhcC----CCchhHHHHH---HHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHH-hCccc
Confidence 6778999999999 9999999999 99999999999999999999999988777765554444333222 23677
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHH
Q 038048 88 DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAW 167 (575)
Q Consensus 88 ~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~ 167 (575)
..++|+.|..++..|++++|+..... .+...|+++-.+...+.
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~-------------------------------------L~~~~P~N~~~~~~~~~ 348 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQP-------------------------------------LIAAQPDNPYYLELAGD 348 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHH-------------------------------------HHHhCCCCHHHHHHHHH
Confidence 88999999999999999999987322 13457888888888999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCC
Q 038048 168 AYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQM 227 (575)
Q Consensus 168 aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~ 227 (575)
+++..++.++|++.|++++.++|+... .+|+|.+|++.|++.+|+.+++..+..+|+++.
T Consensus 349 i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~ 409 (484)
T COG4783 349 ILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPN 409 (484)
T ss_pred HHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCch
Confidence 999999999999999999999999988 999999999999999999999999999998874
No 4
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.55 E-value=1e-13 Score=128.92 Aligned_cols=129 Identities=16% Similarity=0.106 Sum_probs=111.3
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHH
Q 038048 73 AVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQI 152 (575)
Q Consensus 73 Ai~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL 152 (575)
-+.+|+++++.+|+. ++++|.++.+.|++++|+.++.. ++
T Consensus 12 ~~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~-------------------------------------al 51 (144)
T PRK15359 12 PEDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSW-------------------------------------LV 51 (144)
T ss_pred HHHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHH-------------------------------------HH
Confidence 357899999999875 66789999999999999988533 35
Q ss_pred hhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCChhH
Q 038048 153 TVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMDTSY 231 (575)
Q Consensus 153 ~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~~~~~ 231 (575)
.++|.+..+++++|.++..+|++++|+..|++|++++|+++. ++++|.+|..+|++++|+..|++++.+.|++.. +
T Consensus 52 ~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~---~ 128 (144)
T PRK15359 52 MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADAS---W 128 (144)
T ss_pred HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH---H
Confidence 679999999999999999999999999999999999999999 999999999999999999999999999998762 2
Q ss_pred HHHHHHHHHHHHH
Q 038048 232 SRSFERAIQMLTE 244 (575)
Q Consensus 232 l~slerA~elL~e 244 (575)
....+.++.++..
T Consensus 129 ~~~~~~~~~~l~~ 141 (144)
T PRK15359 129 SEIRQNAQIMVDT 141 (144)
T ss_pred HHHHHHHHHHHHH
Confidence 3334445554443
No 5
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.53 E-value=6e-13 Score=149.80 Aligned_cols=159 Identities=11% Similarity=0.049 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHH
Q 038048 56 PYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAF 135 (575)
Q Consensus 56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~ 135 (575)
.+...+..++..+++++|+..|++++.++|....++.++|.+|..+|++++|+..+..+++.. +.....
T Consensus 333 a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-----------p~~~~~ 401 (615)
T TIGR00990 333 ALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-----------SEDPDI 401 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----------CCCHHH
Confidence 445566677788999999999999999999999999999999999999999999866554431 122233
Q ss_pred HhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcC
Q 038048 136 AGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMN 206 (575)
Q Consensus 136 ~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qG 206 (575)
+..++.++...|+ +.++.++|++..++.+||.+|..+|++++|+.+|++++.+.|+++. +.++|.+|..+|
T Consensus 402 ~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g 481 (615)
T TIGR00990 402 YYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQN 481 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc
Confidence 3444444444444 3568889999999999999999999999999999999999999999 999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCC
Q 038048 207 RVTEAKSLLQAVKISAGNR 225 (575)
Q Consensus 207 r~eEAi~lLekALel~P~n 225 (575)
++++|+.+|++++.+.|++
T Consensus 482 ~~~~A~~~~~~Al~l~p~~ 500 (615)
T TIGR00990 482 KFDEAIEKFDTAIELEKET 500 (615)
T ss_pred CHHHHHHHHHHHHhcCCcc
Confidence 9999999999999998864
No 6
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.53 E-value=8.9e-13 Score=148.43 Aligned_cols=76 Identities=14% Similarity=0.026 Sum_probs=53.3
Q ss_pred hHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048 150 IQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNR 225 (575)
Q Consensus 150 ~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n 225 (575)
.++.++|....++.++|.+|..+|++++|+.+|+++++++|++.. ++++|.+|..+|++++|+.+|+++++++|++
T Consensus 356 kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~ 432 (615)
T TIGR00990 356 KSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF 432 (615)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC
Confidence 345566766667777777777777777777777777777777766 6777777777777777777777777776654
No 7
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.48 E-value=1.2e-12 Score=128.38 Aligned_cols=123 Identities=18% Similarity=0.128 Sum_probs=113.1
Q ss_pred cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHh
Q 038048 67 DKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQ 146 (575)
Q Consensus 67 ~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sq 146 (575)
.++.++++..|+++++.+|++..+|..||.+|...|++++|+.++..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~--------------------------------- 98 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQ--------------------------------- 98 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH---------------------------------
Confidence 45678999999999999999999999999999999999999998543
Q ss_pred chhhHHhhcCCcHHHHHHHHHH-HHHcCC--HHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 038048 147 GKKIQITVEQEKSRILGNLAWA-YMQQNN--FEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISA 222 (575)
Q Consensus 147 g~k~aL~L~Pd~~~a~~nLG~a-Y~~qGr--yeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~ 222 (575)
++.++|++..++.++|.+ |...|+ +++|+..|+++++++|++.. +++||.++..+|++++|+.++++++++.
T Consensus 99 ----Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 99 ----ALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred ----HHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 356799999999999987 578888 59999999999999999999 9999999999999999999999999999
Q ss_pred CCCC
Q 038048 223 GNRQ 226 (575)
Q Consensus 223 P~n~ 226 (575)
|.+.
T Consensus 175 ~~~~ 178 (198)
T PRK10370 175 SPRV 178 (198)
T ss_pred CCCc
Confidence 8765
No 8
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.48 E-value=2.6e-12 Score=146.51 Aligned_cols=76 Identities=20% Similarity=0.196 Sum_probs=54.8
Q ss_pred HHhhcCCcHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048 151 QITVEQEKSRILGNLAWAYMQQNNFEM----AEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNR 225 (575)
Q Consensus 151 aL~L~Pd~~~a~~nLG~aY~~qGryeE----Ae~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n 225 (575)
++.++|++..++++||.+|..+|++++ |+.+|+++++++|++.. +.+||.+|..+|++++|+.+|++++.++|++
T Consensus 238 al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~ 317 (656)
T PRK15174 238 ALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDL 317 (656)
T ss_pred HHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 455667777777777777777777775 67777777777777776 7777777777777777777777777777765
Q ss_pred C
Q 038048 226 Q 226 (575)
Q Consensus 226 ~ 226 (575)
.
T Consensus 318 ~ 318 (656)
T PRK15174 318 P 318 (656)
T ss_pred H
Confidence 4
No 9
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.48 E-value=4.5e-12 Score=149.96 Aligned_cols=165 Identities=12% Similarity=0.051 Sum_probs=130.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHh-----------------------cCHHH
Q 038048 61 KHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARS-----------------------GRIEE 117 (575)
Q Consensus 61 ~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~-----------------------gaLee 117 (575)
+......+++++|+..|++++...|.. ..++++|.++.+.|++++|+.++. +.+++
T Consensus 516 A~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~e 594 (987)
T PRK09782 516 AYQAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPEL 594 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHH
Confidence 344456788999999999887765553 457788999999999999888732 55555
Q ss_pred HHHHHHHHHHhhHHHHHHHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 038048 118 EIELLQNKLKNIEEGIAFAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLG 189 (575)
Q Consensus 118 Ai~lL~~~L~l~~~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeid 189 (575)
++..+...+...+. ...+.+++.++...|+ ..++.++|++..+++++|.++..+|++++|+.+|++|++++
T Consensus 595 Al~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~ 673 (987)
T PRK09782 595 ALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL 673 (987)
T ss_pred HHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 66666666654443 4456677777777776 45688899999999999999999999999999999999999
Q ss_pred CCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCC
Q 038048 190 VDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQM 227 (575)
Q Consensus 190 Pdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~ 227 (575)
|+++. +++||.+|..+|++++|+.+|++++++.|+...
T Consensus 674 P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~ 712 (987)
T PRK09782 674 PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQAL 712 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCch
Confidence 99998 899999999999999999999999999887653
No 10
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=1.2e-13 Score=152.76 Aligned_cols=112 Identities=21% Similarity=0.201 Sum_probs=94.8
Q ss_pred hHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCC
Q 038048 150 IQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMD 228 (575)
Q Consensus 150 ~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~~ 228 (575)
.++.++|.+.++||-||.+|+++++++.|+-+|++|++|+|.+.. .+.+|.+|...|+.++|+.+|++|+.++|.++-.
T Consensus 480 ~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~ 559 (638)
T KOG1126|consen 480 KALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLC 559 (638)
T ss_pred hhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchh
Confidence 357889999999999999999999999999999999999999999 9999999999999999999999999999988632
Q ss_pred h----hHHHHHHHHHHHHHHhccccccCcccccccch
Q 038048 229 T----SYSRSFERAIQMLTELESPSVLKLTELEVGDD 261 (575)
Q Consensus 229 ~----~~l~slerA~elL~ele~al~~~p~~~e~~~~ 261 (575)
. ..+-.+.+..++|.++|..-.+.|++.-++.-
T Consensus 560 ~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~l 596 (638)
T KOG1126|consen 560 KYHRASILFSLGRYVEALQELEELKELVPQESSVFAL 596 (638)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHH
Confidence 1 12344566777777777777777877755433
No 11
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.45 E-value=2.1e-11 Score=114.73 Aligned_cols=159 Identities=17% Similarity=0.115 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHH
Q 038048 56 PYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAF 135 (575)
Q Consensus 56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~ 135 (575)
.+...+..+...+++++|+.+|++++..+|.+..++..+|.+|..+|++++|+.++...++.... ....
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-----------~~~~ 101 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-----------NGDV 101 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----------CHHH
Confidence 34455677788999999999999999999999999999999999999999999997665543211 1112
Q ss_pred HhHHHHHHHHhch--------hhHHhh--cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH
Q 038048 136 AGVKTKMARSQGK--------KIQITV--EQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMH 204 (575)
Q Consensus 136 ~~nla~al~sqg~--------k~aL~L--~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~ 204 (575)
+.+++..+...|+ ..++.. .+....++.++|.+|..+|++++|+.+|.+++.++|++.. +..+|.++..
T Consensus 102 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 181 (234)
T TIGR02521 102 LNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYL 181 (234)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHH
Confidence 2223333333333 112222 2455668999999999999999999999999999999988 9999999999
Q ss_pred cCCHHHHHHHHHHHHHHcCCC
Q 038048 205 MNRVTEAKSLLQAVKISAGNR 225 (575)
Q Consensus 205 qGr~eEAi~lLekALel~P~n 225 (575)
+|++++|+.++++++...|.+
T Consensus 182 ~~~~~~A~~~~~~~~~~~~~~ 202 (234)
T TIGR02521 182 RGQYKDARAYLERYQQTYNQT 202 (234)
T ss_pred cCCHHHHHHHHHHHHHhCCCC
Confidence 999999999999999986644
No 12
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.43 E-value=2.5e-12 Score=115.49 Aligned_cols=115 Identities=19% Similarity=0.138 Sum_probs=106.2
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhh
Q 038048 75 SLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITV 154 (575)
Q Consensus 75 ~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L 154 (575)
+.|++++..+|.+..+++.+|..+...|++++|+.++.. .+.+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~-------------------------------------~~~~ 46 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQL-------------------------------------LAAY 46 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHH-------------------------------------HHHh
Confidence 468899999999999999999999999999999988422 2456
Q ss_pred cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 155 EQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 155 ~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
+|.+..++.++|.+|..+|++++|+.+|+++++++|++.. ++++|.+|..+|++++|+..|+++++.+|++.
T Consensus 47 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 119 (135)
T TIGR02552 47 DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENP 119 (135)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 8999999999999999999999999999999999999999 99999999999999999999999999999765
No 13
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.41 E-value=2.4e-11 Score=127.18 Aligned_cols=159 Identities=16% Similarity=0.110 Sum_probs=101.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHH
Q 038048 61 KHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKT 140 (575)
Q Consensus 61 ~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla 140 (575)
+..+...|++++|+.+|.++++.+|....++..|+.+|...|++++|++.+...+........ .....++..++
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~~~~~la 187 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLR------VEIAHFYCELA 187 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcch------HHHHHHHHHHH
Confidence 333444455555555555555554444445555555555555555555543322211000000 00011223344
Q ss_pred HHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHcCCHHH
Q 038048 141 KMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK--QCNLAICLMHMNRVTE 210 (575)
Q Consensus 141 ~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~--~~NLA~iy~~qGr~eE 210 (575)
..+...++ ..++.++|+...+++.+|.+|..+|++++|+.+|++++..+|++.. +..|+.+|..+|++++
T Consensus 188 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~ 267 (389)
T PRK11788 188 QQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAE 267 (389)
T ss_pred HHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHH
Confidence 44444444 2356678888889999999999999999999999999999998764 6789999999999999
Q ss_pred HHHHHHHHHHHcCCC
Q 038048 211 AKSLLQAVKISAGNR 225 (575)
Q Consensus 211 Ai~lLekALel~P~n 225 (575)
|+.+++++++..|+.
T Consensus 268 A~~~l~~~~~~~p~~ 282 (389)
T PRK11788 268 GLEFLRRALEEYPGA 282 (389)
T ss_pred HHHHHHHHHHhCCCc
Confidence 999999999988864
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.41 E-value=2.7e-11 Score=138.18 Aligned_cols=151 Identities=14% Similarity=0.082 Sum_probs=78.5
Q ss_pred HHHcCChHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHH
Q 038048 64 QLIDKDPSRAVSLFWAAINAGDR-VDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKM 142 (575)
Q Consensus 64 ~l~~kd~eeAi~lf~kAL~l~p~-~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~a 142 (575)
++..+++++|+..|++++..+|. .......++.+|.+.|++++|+..+...++..... ...+.+++.+
T Consensus 187 l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~-----------~~~~~~Lg~~ 255 (656)
T PRK15174 187 FLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDG-----------AALRRSLGLA 255 (656)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-----------HHHHHHHHHH
Confidence 44556666666666666655432 22233344556666666666666544433321100 0011111111
Q ss_pred HHHhch------------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHH
Q 038048 143 ARSQGK------------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVT 209 (575)
Q Consensus 143 l~sqg~------------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~e 209 (575)
+...|+ +.++.++|++..++.++|.+|..+|++++|+.+|+++++++|++.. +.+||.+|..+|+++
T Consensus 256 l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~ 335 (656)
T PRK15174 256 YYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYT 335 (656)
T ss_pred HHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 111110 2345556666666666666666666666666666666666666666 666666666666666
Q ss_pred HHHHHHHHHHHHcCCC
Q 038048 210 EAKSLLQAVKISAGNR 225 (575)
Q Consensus 210 EAi~lLekALel~P~n 225 (575)
+|+..|++++..+|++
T Consensus 336 eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 336 AASDEFVQLAREKGVT 351 (656)
T ss_pred HHHHHHHHHHHhCccc
Confidence 6666666666666554
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.38 E-value=4.5e-11 Score=125.19 Aligned_cols=60 Identities=15% Similarity=0.265 Sum_probs=50.7
Q ss_pred CCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhc
Q 038048 53 GDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSG 113 (575)
Q Consensus 53 ~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~g 113 (575)
....|.. +......+++++|+..|.+++..+|++..+++.+|.+|...|++++|+.++..
T Consensus 35 ~~~~y~~-g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 94 (389)
T PRK11788 35 LSRDYFK-GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQN 94 (389)
T ss_pred ccHHHHH-HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 3344444 35567889999999999999999999999999999999999999999988543
No 16
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.37 E-value=4.3e-11 Score=141.72 Aligned_cols=200 Identities=13% Similarity=0.026 Sum_probs=144.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcC---------------------
Q 038048 56 PYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGR--------------------- 114 (575)
Q Consensus 56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~ga--------------------- 114 (575)
.|...+..+. .+++++|+..|.+++...|+.. ....+|.++.+.|++++|+.++...
T Consensus 479 a~~~LG~~l~-~~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~G 556 (987)
T PRK09782 479 AWNRLAKCYR-DTLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAG 556 (987)
T ss_pred HHHHHHHHHH-hCCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCC
Confidence 3444444444 4789999999999999999754 4667788889999999999985432
Q ss_pred -HHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038048 115 -IEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKA 185 (575)
Q Consensus 115 -LeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkA 185 (575)
+++++..+...+...+........++..+...|+ ..++.++|+ ..++.++|.++.++|++++|+..|+++
T Consensus 557 d~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~A 635 (987)
T PRK09782 557 NGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAA 635 (987)
T ss_pred CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 2333444444443221111222222222322244 456888997 889999999999999999999999999
Q ss_pred HHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCCh----hHHHHHHHHHHHHHHhccccccCcccccc
Q 038048 186 LSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMDT----SYSRSFERAIQMLTELESPSVLKLTELEV 258 (575)
Q Consensus 186 LeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~~~----~~l~slerA~elL~ele~al~~~p~~~e~ 258 (575)
++++|++.. +++||.+|..+|++++|+.+|+++++++|++.... ......++..+++..++.++.+.|+....
T Consensus 636 L~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i 713 (987)
T PRK09782 636 LELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALI 713 (987)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchh
Confidence 999999999 99999999999999999999999999999876311 11233445566666777777777766533
No 17
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.36 E-value=2.1e-11 Score=121.54 Aligned_cols=131 Identities=18% Similarity=0.095 Sum_probs=118.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhH
Q 038048 59 RAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGV 138 (575)
Q Consensus 59 rA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~n 138 (575)
..+.-++..+|+..|...+++||+.+|++..++..+|.+|..+|+.+-|.+.|.+
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~Yrk------------------------- 94 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRK------------------------- 94 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHH-------------------------
Confidence 3445678899999999999999999999999999999999999999999998655
Q ss_pred HHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHH-HHHHHHHHHHcCCHHHHHHHH
Q 038048 139 KTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSL--GVDMNK-QCNLAICLMHMNRVTEAKSLL 215 (575)
Q Consensus 139 la~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALei--dPdn~~-~~NLA~iy~~qGr~eEAi~lL 215 (575)
++.++|++.++++|.|+.++.+|+|++|.++|++|+.. .+.... +-|+|.|-+++|+++.|..+|
T Consensus 95 ------------Alsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l 162 (250)
T COG3063 95 ------------ALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYL 162 (250)
T ss_pred ------------HHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHH
Confidence 36789999999999999999999999999999999963 344445 889999999999999999999
Q ss_pred HHHHHHcCCCC
Q 038048 216 QAVKISAGNRQ 226 (575)
Q Consensus 216 ekALel~P~n~ 226 (575)
+++|+++|+.+
T Consensus 163 ~raL~~dp~~~ 173 (250)
T COG3063 163 KRALELDPQFP 173 (250)
T ss_pred HHHHHhCcCCC
Confidence 99999999876
No 18
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.36 E-value=6.9e-11 Score=132.71 Aligned_cols=74 Identities=19% Similarity=0.199 Sum_probs=45.9
Q ss_pred HhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 152 ITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 152 L~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
+...|++..+++++|.+|..+|++++|+.+|+++++..|++.. +.++|.+|...|+ .+|+.++++++.+.|++.
T Consensus 763 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~ 837 (899)
T TIGR02917 763 LKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIP 837 (899)
T ss_pred HHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCc
Confidence 4445666666666666666666666666666666666666665 6666666666666 556666666666655543
No 19
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.34 E-value=1.4e-11 Score=114.68 Aligned_cols=125 Identities=14% Similarity=0.029 Sum_probs=106.6
Q ss_pred hhhhHhhcCCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHH
Q 038048 42 DIFHVIHKVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIEL 121 (575)
Q Consensus 42 e~y~~~~~~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~l 121 (575)
+.|.......+.. +...+......|++++|+.+|++++..+|.+..+++++|.++..+|++++|+..+..
T Consensus 14 ~~~~~al~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~-------- 83 (144)
T PRK15359 14 DILKQLLSVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGH-------- 83 (144)
T ss_pred HHHHHHHHcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHH--------
Confidence 4454444443322 344566778899999999999999999999999999999999999999999998544
Q ss_pred HHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHH
Q 038048 122 LQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAI 200 (575)
Q Consensus 122 L~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~ 200 (575)
++.++|+++.+++++|.+|..+|++++|+..|++|+++.|+++. +.++|.
T Consensus 84 -----------------------------Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~ 134 (144)
T PRK15359 84 -----------------------------ALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQN 134 (144)
T ss_pred -----------------------------HHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 35679999999999999999999999999999999999999999 888888
Q ss_pred HHHHc
Q 038048 201 CLMHM 205 (575)
Q Consensus 201 iy~~q 205 (575)
+....
T Consensus 135 ~~~~l 139 (144)
T PRK15359 135 AQIMV 139 (144)
T ss_pred HHHHH
Confidence 87654
No 20
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.34 E-value=5.6e-12 Score=139.64 Aligned_cols=148 Identities=18% Similarity=0.154 Sum_probs=124.3
Q ss_pred hhhhHhhcCC-CCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHH
Q 038048 42 DIFHVIHKVP-SGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIE 120 (575)
Q Consensus 42 e~y~~~~~~p-s~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~ 120 (575)
..|.....++ ...+.|.-.++......++|.|..+|++||..+|++..|||+||.+|.++++++.|+-.+++
T Consensus 442 k~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqk------- 514 (638)
T KOG1126|consen 442 KCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQK------- 514 (638)
T ss_pred HHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHh-------
Confidence 4455444433 35666666777777778888888888888888888888888888888888888888877544
Q ss_pred HHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHH
Q 038048 121 LLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLA 199 (575)
Q Consensus 121 lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA 199 (575)
++.++|.+..++..+|.+|.+.|+.++|+.+|++|+.++|.++- .++.|
T Consensus 515 ------------------------------A~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 515 ------------------------------AVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred ------------------------------hhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 46789999999999999999999999999999999999999999 99999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 200 ICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 200 ~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
.+|..+++++||...|+++.++-|++.
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es 591 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQES 591 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchH
Confidence 999999999999999999999999764
No 21
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.34 E-value=1.2e-10 Score=109.69 Aligned_cols=165 Identities=12% Similarity=0.075 Sum_probs=130.2
Q ss_pred CCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhh
Q 038048 50 VPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNI 129 (575)
Q Consensus 50 ~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~ 129 (575)
.|.....+...+.++...+++++|+.+|++++...|....+++++|.+|...|++++|+..+...+.... .
T Consensus 61 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~---------~ 131 (234)
T TIGR02521 61 DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL---------Y 131 (234)
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc---------c
Confidence 3444445555667778899999999999999999999999999999999999999999999766543210 0
Q ss_pred HHHHHHHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHH
Q 038048 130 EEGIAFAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAI 200 (575)
Q Consensus 130 ~~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~ 200 (575)
......+.+++.++...|+ ..++...|++..++..+|.+|..+|++++|+.++++++.+.|++.. +..++.
T Consensus 132 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 211 (234)
T TIGR02521 132 PQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIR 211 (234)
T ss_pred ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 0011122334444444444 3456778888999999999999999999999999999999998888 888999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHcC
Q 038048 201 CLMHMNRVTEAKSLLQAVKISAG 223 (575)
Q Consensus 201 iy~~qGr~eEAi~lLekALel~P 223 (575)
++...|+.++|..+.+.+....|
T Consensus 212 ~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 212 IARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHhhHHHHHHHHHHHHhhCc
Confidence 99999999999999988776543
No 22
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.34 E-value=5.6e-11 Score=143.26 Aligned_cols=56 Identities=13% Similarity=0.106 Sum_probs=50.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHH
Q 038048 61 KHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIE 116 (575)
Q Consensus 61 ~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLe 116 (575)
+..++..+++++|+.+|+++++.+|++..+++.||.+|.++|++++|+.++..+++
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~ 331 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALA 331 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45567789999999999999999999999999999999999999999999766654
No 23
>PRK12370 invasion protein regulator; Provisional
Probab=99.33 E-value=5.3e-11 Score=133.04 Aligned_cols=147 Identities=8% Similarity=-0.098 Sum_probs=113.8
Q ss_pred CChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhc
Q 038048 68 KDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQG 147 (575)
Q Consensus 68 kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg 147 (575)
+++++|+..+++|++++|++..++..+|.++...|++++|+.++.++++.. +.....+..++.++...|
T Consensus 318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-----------P~~~~a~~~lg~~l~~~G 386 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-----------PISADIKYYYGWNLFMAG 386 (553)
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----------CCCHHHHHHHHHHHHHCC
Confidence 458999999999999999999999999999999999999999866654432 222223334444444444
Q ss_pred h--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHcCCHHHHHHHHHH
Q 038048 148 K--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLG-VDMNK-QCNLAICLMHMNRVTEAKSLLQA 217 (575)
Q Consensus 148 ~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeid-Pdn~~-~~NLA~iy~~qGr~eEAi~lLek 217 (575)
+ +.++.++|++..+++.++.+++.+|++++|+..++++++.. |+++. +.+||.+|..+|++++|+..+++
T Consensus 387 ~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~ 466 (553)
T PRK12370 387 QLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKE 466 (553)
T ss_pred CHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4 34677888887777777777788888888888888888775 67777 88888888888888888888888
Q ss_pred HHHHcCCC
Q 038048 218 VKISAGNR 225 (575)
Q Consensus 218 ALel~P~n 225 (575)
++...|.+
T Consensus 467 ~~~~~~~~ 474 (553)
T PRK12370 467 ISTQEITG 474 (553)
T ss_pred hhhccchh
Confidence 77766653
No 24
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.33 E-value=1.4e-10 Score=130.27 Aligned_cols=176 Identities=18% Similarity=0.099 Sum_probs=116.0
Q ss_pred CCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHH--------------
Q 038048 51 PSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIE-------------- 116 (575)
Q Consensus 51 ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLe-------------- 116 (575)
|.....+...+.++...+++++|+.+|.+++..+|.+..+++++|.++...|++++|+..+...++
T Consensus 462 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 541 (899)
T TIGR02917 462 PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAG 541 (899)
T ss_pred CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 333445555666777788999999999999998888888888999999999999998888544332
Q ss_pred ---------HHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHH
Q 038048 117 ---------EEIELLQNKLKNIEEGIAFAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAE 179 (575)
Q Consensus 117 ---------eAi~lL~~~L~l~~~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe 179 (575)
++...+...+...+........++..+...|+ +..+...|.+..++..+|.+|...|++++|+
T Consensus 542 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 621 (899)
T TIGR02917 542 LYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAV 621 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 22222222222222222223334444444444 2234446666677777777777777777777
Q ss_pred HHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 180 QYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 180 ~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
.+|+++++++|++.. +..+|.+|...|++++|+.+|++++...|++.
T Consensus 622 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 669 (899)
T TIGR02917 622 SSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNT 669 (899)
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Confidence 777777777777776 77777777777777777777777777766543
No 25
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.32 E-value=8.1e-12 Score=138.00 Aligned_cols=256 Identities=18% Similarity=0.123 Sum_probs=181.8
Q ss_pred CCcHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHH
Q 038048 53 GDSPYVRAKHIQLIDKDPSRAVSLFWAAINA--------GDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQN 124 (575)
Q Consensus 53 ~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l--------~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~ 124 (575)
..........++...++++.|+.+|.+|++. .+.....+..+|.+|..+++|++|+.+|..++..-+.+++.
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3334445667788899999999999999987 55566677789999999999999999988888777777766
Q ss_pred HHHhhHHHHHHHhHHHHHHHHhch--------hhHHhh--------cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 038048 125 KLKNIEEGIAFAGVKTKMARSQGK--------KIQITV--------EQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSL 188 (575)
Q Consensus 125 ~L~l~~~a~a~~~nla~al~sqg~--------k~aL~L--------~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALei 188 (575)
.+. .-..++.+++.++...|+ +.++.| .|+-...+.+++.++..++++++|+.+|+++++|
T Consensus 278 ~h~---~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 278 DHP---AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred CCH---HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 653 223567788888877777 222222 3455568999999999999999999999999998
Q ss_pred C-----CCC---HH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHHHhccccccCccccccc
Q 038048 189 G-----VDM---NK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMDTSYSRSFERAIQMLTELESPSVLKLTELEVG 259 (575)
Q Consensus 189 d-----Pdn---~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~~~~~l~slerA~elL~ele~al~~~p~~~e~~ 259 (575)
. +++ +. ..|||.+|..+|+++||+.+|++|+.+...-.+... ...+.....++..-..+ ..+.+++.-
T Consensus 355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~--~~~~~~l~~la~~~~~~-k~~~~a~~l 431 (508)
T KOG1840|consen 355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD--YGVGKPLNQLAEAYEEL-KKYEEAEQL 431 (508)
T ss_pred HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC--hhhhHHHHHHHHHHHHh-cccchHHHH
Confidence 5 344 23 779999999999999999999999998754332100 00111122222111111 011111110
Q ss_pred chhhhcCCCCCCCCCCCCCccccCcCCCCCCCCchhhhhhhhcCCCccchhhhhhhHhHhhccccccccccccccCcchh
Q 038048 260 DDQKNQRPFALPADGNTNPQVTCSTSGGQNHHLSTFSVCRSLANGHDEEILNEQDRIAYSRNHHENKHSFLGYDKGSLKL 339 (575)
Q Consensus 260 ~~~~~~~s~~~p~~r~~~~~~~~s~lg~~~~~l~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (575)
... +..|. ..+|+ +|++....-.+|+.. |.-++++|.|..+...+-++.+-
T Consensus 432 ~~~--------------~~~i~-~~~g~--~~~~~~~~~~nL~~~------------Y~~~g~~e~a~~~~~~~~~~~~~ 482 (508)
T KOG1840|consen 432 FEE--------------AKDIM-KLCGP--DHPDVTYTYLNLAAL------------YRAQGNYEAAEELEEKVLNAREQ 482 (508)
T ss_pred HHH--------------HHHHH-HHhCC--CCCchHHHHHHHHHH------------HHHcccHHHHHHHHHHHHHHHHH
Confidence 010 11366 66777 899999999999988 88999999999998888888774
Q ss_pred ccCCC
Q 038048 340 MSSGP 344 (575)
Q Consensus 340 ~~~~~ 344 (575)
.. |.
T Consensus 483 ~~-~~ 486 (508)
T KOG1840|consen 483 RL-GT 486 (508)
T ss_pred cC-CC
Confidence 43 44
No 26
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.31 E-value=3.4e-11 Score=124.40 Aligned_cols=120 Identities=18% Similarity=0.111 Sum_probs=76.9
Q ss_pred hHHHHHHHHHHHHcCC---C-cHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHH
Q 038048 70 PSRAVSLFWAAINAGD---R-VDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARS 145 (575)
Q Consensus 70 ~eeAi~lf~kAL~l~p---~-~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~s 145 (575)
.+.++..+.++|...+ . .+..++++|.+|...|++++|+..+..
T Consensus 42 ~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~-------------------------------- 89 (296)
T PRK11189 42 QEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQ-------------------------------- 89 (296)
T ss_pred HHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHH--------------------------------
Confidence 4556666666664322 2 244566677777777777776665322
Q ss_pred hchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 038048 146 QGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGN 224 (575)
Q Consensus 146 qg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~ 224 (575)
++.++|+++.+|+++|.+|..+|++++|+..|++|++++|++.. ++++|.+|..+|++++|+..|+++++++|+
T Consensus 90 -----Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~ 164 (296)
T PRK11189 90 -----ALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN 164 (296)
T ss_pred -----HHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 24456666667777777777777777777777777777777666 667777777777777777777777776665
Q ss_pred CC
Q 038048 225 RQ 226 (575)
Q Consensus 225 n~ 226 (575)
++
T Consensus 165 ~~ 166 (296)
T PRK11189 165 DP 166 (296)
T ss_pred CH
Confidence 53
No 27
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.30 E-value=8.1e-11 Score=134.89 Aligned_cols=148 Identities=11% Similarity=0.047 Sum_probs=127.2
Q ss_pred hhhhhHhhcCCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHH
Q 038048 41 GDIFHVIHKVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIE 120 (575)
Q Consensus 41 ae~y~~~~~~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~ 120 (575)
.+........+.....+...+.+....+.+++|+.+++.+++..|++..++.++|.++.+++++++|+.....
T Consensus 73 ~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~------- 145 (694)
T PRK15179 73 PELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIEL------- 145 (694)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHH-------
Confidence 3444445555555566666667777888899999999999999999999999999999999999999887332
Q ss_pred HHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHH
Q 038048 121 LLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLA 199 (575)
Q Consensus 121 lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA 199 (575)
++..+|++..+++.+|.++.++|+|++|+.+|+++++.+|++.. +.++|
T Consensus 146 ------------------------------~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a 195 (694)
T PRK15179 146 ------------------------------YFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWA 195 (694)
T ss_pred ------------------------------HhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 35679999999999999999999999999999999999999999 99999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048 200 ICLMHMNRVTEAKSLLQAVKISAGNR 225 (575)
Q Consensus 200 ~iy~~qGr~eEAi~lLekALel~P~n 225 (575)
.+|+..|+.++|...|+++++.....
T Consensus 196 ~~l~~~G~~~~A~~~~~~a~~~~~~~ 221 (694)
T PRK15179 196 QSLTRRGALWRARDVLQAGLDAIGDG 221 (694)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhhCcc
Confidence 99999999999999999999987643
No 28
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.29 E-value=2e-10 Score=138.49 Aligned_cols=168 Identities=13% Similarity=0.066 Sum_probs=128.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHH---------------------
Q 038048 59 RAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEE--------------------- 117 (575)
Q Consensus 59 rA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLee--------------------- 117 (575)
..+..+...+++++|+.+|+++++.+|++..+++.||.+|.++|++++|+..+...++.
T Consensus 466 ~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~ 545 (1157)
T PRK11447 466 QQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRD 545 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCH
Confidence 34455667899999999999999999999999999999999999999999986554432
Q ss_pred --HHHHHHHHHH--------hhHHH--HHHHhHHHHHHHHhch----hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 038048 118 --EIELLQNKLK--------NIEEG--IAFAGVKTKMARSQGK----KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQY 181 (575)
Q Consensus 118 --Ai~lL~~~L~--------l~~~a--~a~~~nla~al~sqg~----k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~ 181 (575)
++..+..... .+... .......+..+...|+ ...+...|.++.++++||.+|.++|++++|+.+
T Consensus 546 ~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~ 625 (1157)
T PRK11447 546 RAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAA 625 (1157)
T ss_pred HHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHH
Confidence 1111111000 00000 0011233444455555 234556888889999999999999999999999
Q ss_pred HHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 182 YRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 182 yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
|+++++++|++.. +++||.+|..+|++++|+.+|++++...|++.
T Consensus 626 y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~ 671 (1157)
T PRK11447 626 YQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSL 671 (1157)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCCh
Confidence 9999999999999 99999999999999999999999999888765
No 29
>PRK12370 invasion protein regulator; Provisional
Probab=99.28 E-value=5.7e-11 Score=132.80 Aligned_cols=144 Identities=13% Similarity=0.040 Sum_probs=87.9
Q ss_pred CChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCC---------HHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhH
Q 038048 68 KDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDR---------SDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGV 138 (575)
Q Consensus 68 kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGr---------ydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~n 138 (575)
+++++|+.+|++|++++|++..++.+||.+|...+. +++|+.++.++++ ..+.....+..
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~-----------ldP~~~~a~~~ 343 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE-----------LDHNNPQALGL 343 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh-----------cCCCCHHHHHH
Confidence 457899999999999999999999999998875433 5666665433322 22222222222
Q ss_pred HHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHH
Q 038048 139 KTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVT 209 (575)
Q Consensus 139 la~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~e 209 (575)
++.++...|+ +.++.++|+++.+++++|.+|..+|++++|+.+|++|++++|++.. .+.++.++..+|+++
T Consensus 344 lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~e 423 (553)
T PRK12370 344 LGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGID 423 (553)
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHH
Confidence 2222222222 2345566666666666666666666666666666666666666655 444555555566666
Q ss_pred HHHHHHHHHHHHc
Q 038048 210 EAKSLLQAVKISA 222 (575)
Q Consensus 210 EAi~lLekALel~ 222 (575)
+|+..+++++...
T Consensus 424 eA~~~~~~~l~~~ 436 (553)
T PRK12370 424 DAIRLGDELRSQH 436 (553)
T ss_pred HHHHHHHHHHHhc
Confidence 6666666666553
No 30
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.28 E-value=2e-10 Score=118.68 Aligned_cols=128 Identities=13% Similarity=-0.049 Sum_probs=111.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHH
Q 038048 57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFA 136 (575)
Q Consensus 57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~ 136 (575)
|...+.++...|++++|+..|.++++.+|++..+++++|.+|...|++++|++.+..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~----------------------- 123 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDS----------------------- 123 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH-----------------------
Confidence 555666777889999999999999999999999999999999999999999988533
Q ss_pred hHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHH
Q 038048 137 GVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLL 215 (575)
Q Consensus 137 ~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lL 215 (575)
++.++|++..++.++|.+|..+|++++|+..|+++++++|+++. ... ..++...+++++|+..|
T Consensus 124 --------------Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l 188 (296)
T PRK11189 124 --------------VLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENL 188 (296)
T ss_pred --------------HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHH
Confidence 35679999999999999999999999999999999999999986 222 23455678999999999
Q ss_pred HHHHHHc
Q 038048 216 QAVKISA 222 (575)
Q Consensus 216 ekALel~ 222 (575)
.+++...
T Consensus 189 ~~~~~~~ 195 (296)
T PRK11189 189 KQRYEKL 195 (296)
T ss_pred HHHHhhC
Confidence 8877653
No 31
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.25 E-value=2e-10 Score=109.10 Aligned_cols=122 Identities=18% Similarity=0.104 Sum_probs=104.3
Q ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHH
Q 038048 85 DRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGN 164 (575)
Q Consensus 85 p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~n 164 (575)
++..+..|.+|..+.+.|++++|+.++.- ...++|.+...|++
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~-------------------------------------L~~~Dp~~~~y~~g 74 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQL-------------------------------------LTIYDAWSFDYWFR 74 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHH-------------------------------------HHHhCcccHHHHHH
Confidence 45567889999999999999999998422 35679999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHH
Q 038048 165 LAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMDTSYSRSFERAIQMLT 243 (575)
Q Consensus 165 LG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~~~~~l~slerA~elL~ 243 (575)
||.++..+|+|++|+..|.+|+.++|+++. ++|+|.||+..|+.++|++.|+.++.....++ .+..-.++|+.+|.
T Consensus 75 LG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~---~~~~l~~~A~~~L~ 151 (157)
T PRK15363 75 LGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVS---EHQILRQRAEKMLQ 151 (157)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCh---hHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 99999999999999999999999999875433 23334456777776
Q ss_pred Hhc
Q 038048 244 ELE 246 (575)
Q Consensus 244 ele 246 (575)
.+.
T Consensus 152 ~l~ 154 (157)
T PRK15363 152 QLS 154 (157)
T ss_pred Hhh
Confidence 553
No 32
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=2e-10 Score=123.46 Aligned_cols=118 Identities=22% Similarity=0.240 Sum_probs=86.8
Q ss_pred cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHh
Q 038048 67 DKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQ 146 (575)
Q Consensus 67 ~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sq 146 (575)
.++.++|+.+|++|+++||+...+|..+|.-|..+.+...|++.|..+
T Consensus 343 r~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrA-------------------------------- 390 (559)
T KOG1155|consen 343 RSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRA-------------------------------- 390 (559)
T ss_pred HHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHH--------------------------------
Confidence 567899999999999999999999999999999999999999987665
Q ss_pred chhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038048 147 GKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKIS 221 (575)
Q Consensus 147 g~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel 221 (575)
+.++|.+..+|+.||.+|.-++.+.=|+-+|++|+++.|++.. +..||.||.++++.+||+++|.+++..
T Consensus 391 -----vdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 391 -----VDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred -----HhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 4455555566666666666666666666666666666666665 566666666666666666666666554
No 33
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.21 E-value=1.6e-10 Score=126.74 Aligned_cols=55 Identities=20% Similarity=0.199 Sum_probs=32.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHH
Q 038048 62 HIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIE 116 (575)
Q Consensus 62 ~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLe 116 (575)
...+..|+..+|+-+|+.|+..+|.+.++|..||.+....++=..||.++++.++
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~ 347 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLE 347 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHh
Confidence 3345555566666666666666666666666666666666666666655444444
No 34
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.17 E-value=8.8e-10 Score=108.41 Aligned_cols=60 Identities=22% Similarity=0.070 Sum_probs=50.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcH---HHHHHHHHHHHHCCCHHHHHHHHhcCHH
Q 038048 57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDRVD---SALKDMAVVMKQLDRSDEAIEARSGRIE 116 (575)
Q Consensus 57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~---~Al~nLA~iy~qqGrydEAie~~~gaLe 116 (575)
+...+..++..+++++|+..|++++...|.++ .+++.+|.+|..+|++++|+..+...++
T Consensus 36 ~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~ 98 (235)
T TIGR03302 36 LYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR 98 (235)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34455666788999999999999999998765 5789999999999999999999655443
No 35
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.16 E-value=3e-09 Score=123.45 Aligned_cols=161 Identities=11% Similarity=-0.041 Sum_probs=82.0
Q ss_pred HHcCChHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHH----HHHHHHhhHHHHHHHhHH
Q 038048 65 LIDKDPSRAVSLFWAAINAGDRV-DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIEL----LQNKLKNIEEGIAFAGVK 139 (575)
Q Consensus 65 l~~kd~eeAi~lf~kAL~l~p~~-~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~l----L~~~L~l~~~a~a~~~nl 139 (575)
+..+++++|+..|+++++.++.. ..+...+|.+|..+|++++|+.++...+...... ......+. ....-.++.
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~-~a~~~~g~~ 326 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLF-YSLLESENY 326 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHH-HHHHhcccH
Confidence 45567788888888877765432 2244446778888888888887755543321100 00000000 000000111
Q ss_pred HHHHHHhch-------h----hHHhhcCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHc
Q 038048 140 TKMARSQGK-------K----IQITVEQEK--SRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHM 205 (575)
Q Consensus 140 a~al~sqg~-------k----~aL~L~Pd~--~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~q 205 (575)
..+.....+ . ......|++ ..++..+|.++..+|++++|+..|++++...|++.. ++++|.++..+
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~ 406 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQAR 406 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 111110000 0 000112222 235556666666666666666666666666666666 66666666666
Q ss_pred CCHHHHHHHHHHHHHHcCCCC
Q 038048 206 NRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 206 Gr~eEAi~lLekALel~P~n~ 226 (575)
|++++|+..|++++.++|++.
T Consensus 407 g~~~~A~~~l~~al~l~Pd~~ 427 (765)
T PRK10049 407 GWPRAAENELKKAEVLEPRNI 427 (765)
T ss_pred CCHHHHHHHHHHHHhhCCCCh
Confidence 666666666666666666553
No 36
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.16 E-value=2.1e-10 Score=118.00 Aligned_cols=72 Identities=18% Similarity=0.183 Sum_probs=34.2
Q ss_pred hhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 038048 153 TVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGN 224 (575)
Q Consensus 153 ~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~ 224 (575)
.++|.++..|.|.+.+|.++|.|+.|++..+.||.+||.... +..||.+|..+|++++|+..|+++|+++|+
T Consensus 109 ~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~ 181 (304)
T KOG0553|consen 109 ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPD 181 (304)
T ss_pred hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCC
Confidence 344444444444444444444444444444444444444444 444444444444444444444444444443
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.15 E-value=2.2e-10 Score=116.26 Aligned_cols=190 Identities=18% Similarity=0.114 Sum_probs=68.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHH--HHHHHHHHhhHHHHHHHh
Q 038048 60 AKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEI--ELLQNKLKNIEEGIAFAG 137 (575)
Q Consensus 60 A~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi--~lL~~~L~l~~~a~a~~~ 137 (575)
.+.+....++++.|+..|++.+..++..+..+..|+.+ ...+++++|+.+....++... ..+...+.... ....+.
T Consensus 50 ~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~ 127 (280)
T PF13429_consen 50 LADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYY-RLGDYD 127 (280)
T ss_dssp ---------------------------------------------------------------------H-HH-HTT-HH
T ss_pred cccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccchhhHHHHHHH-HHhHHH
Confidence 33455666788888888888888887777777777777 688888888887544433211 11111111000 000011
Q ss_pred HHHHHHHHhchhhHHhh--cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHH
Q 038048 138 VKTKMARSQGKKIQITV--EQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSL 214 (575)
Q Consensus 138 nla~al~sqg~k~aL~L--~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~l 214 (575)
.....+. .+... .+.++.+|..+|.++.+.|++++|+.+|++||+++|++.. ...|+.++...|++++|..+
T Consensus 128 ~~~~~l~-----~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~ 202 (280)
T PF13429_consen 128 EAEELLE-----KLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREA 202 (280)
T ss_dssp HHHHHHH-----HHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHH-----HHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHH
Confidence 1111111 01111 2456667888888888888888888888888888888888 77888888888888888888
Q ss_pred HHHHHHHcCCCCCCh----hHHHHHHHHHHHHHHhccccccCcccc
Q 038048 215 LQAVKISAGNRQMDT----SYSRSFERAIQMLTELESPSVLKLTEL 256 (575)
Q Consensus 215 LekALel~P~n~~~~----~~l~slerA~elL~ele~al~~~p~~~ 256 (575)
+.......|.++... .....+++..+++.-++.....+|..+
T Consensus 203 l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 203 LKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 877777766554311 122344555555555555555555554
No 38
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1.6e-09 Score=118.72 Aligned_cols=178 Identities=16% Similarity=0.126 Sum_probs=130.5
Q ss_pred cCCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHH-----------------
Q 038048 49 KVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEAR----------------- 111 (575)
Q Consensus 49 ~~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~----------------- 111 (575)
..|+..-.+.-.+..+.--+...+|..+|-|+..++|....+|...|.+|.-.|..|+|+.+|
T Consensus 307 ~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYl 386 (611)
T KOG1173|consen 307 LYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYL 386 (611)
T ss_pred hCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHH
Confidence 456665666666666666699999999999999999999999999999999999999999983
Q ss_pred ------hcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch--------hhHH----hhc---CCcHHHHHHHHHHHH
Q 038048 112 ------SGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK--------KIQI----TVE---QEKSRILGNLAWAYM 170 (575)
Q Consensus 112 ------~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~--------k~aL----~L~---Pd~~~a~~nLG~aY~ 170 (575)
...++.+...+..++...+.+.-..+.++-.+...+. +.++ .+. +.....+.|||-+|.
T Consensus 387 gmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~R 466 (611)
T KOG1173|consen 387 GMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYR 466 (611)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHH
Confidence 3334445555555554333322222222211111111 0111 111 123457899999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 171 QQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 171 ~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
++++|++|+.+|++||.+.|.+.. +..+|.+|..+|+++.|+..|.++|.++|++.
T Consensus 467 kl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~ 523 (611)
T KOG1173|consen 467 KLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNI 523 (611)
T ss_pred HHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccH
Confidence 999999999999999999999999 88999999999999999999999999999763
No 39
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.10 E-value=7.5e-10 Score=112.35 Aligned_cols=77 Identities=16% Similarity=0.254 Sum_probs=41.5
Q ss_pred hHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 150 IQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 150 ~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
.++.++|++..+...+++++...|++++|...+....+..|+++. +..+|.+|..+|++++|+.+|++++..+|+|+
T Consensus 171 ~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 171 KALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 345555555555555565555556665555555555555555555 55556666666666666666666555555543
No 40
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.09 E-value=1.5e-09 Score=108.45 Aligned_cols=127 Identities=19% Similarity=0.218 Sum_probs=113.2
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHH
Q 038048 62 HIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTK 141 (575)
Q Consensus 62 ~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~ 141 (575)
+++...|+.+.|.+.|++|+.++|++.++++|.|-.++.+|+|++|...+..+++
T Consensus 77 ~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~------------------------- 131 (250)
T COG3063 77 HYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALA------------------------- 131 (250)
T ss_pred HHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHh-------------------------
Confidence 5556778999999999999999999999999999999999999999998655422
Q ss_pred HHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038048 142 MARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKI 220 (575)
Q Consensus 142 al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALe 220 (575)
.-.-++.+.++-|+|.+-+++|+++.|..+|+++|+++|+++. ...++..+++.|++.+|..++++...
T Consensus 132 ----------~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~ 201 (250)
T COG3063 132 ----------DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQ 201 (250)
T ss_pred ----------CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHh
Confidence 1123456779999999999999999999999999999999999 99999999999999999999999877
Q ss_pred HcC
Q 038048 221 SAG 223 (575)
Q Consensus 221 l~P 223 (575)
.-+
T Consensus 202 ~~~ 204 (250)
T COG3063 202 RGG 204 (250)
T ss_pred ccc
Confidence 654
No 41
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.07 E-value=5.1e-10 Score=89.99 Aligned_cols=66 Identities=24% Similarity=0.322 Sum_probs=63.4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcC-CHHHHHHHHHHHHHHcC
Q 038048 158 KSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMN-RVTEAKSLLQAVKISAG 223 (575)
Q Consensus 158 ~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qG-r~eEAi~lLekALel~P 223 (575)
++.+|.++|.+++.+|+|++|+.+|.+|++++|++.. ++++|.+|..+| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4668999999999999999999999999999999999 999999999999 79999999999999987
No 42
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.06 E-value=1e-08 Score=110.27 Aligned_cols=182 Identities=14% Similarity=0.068 Sum_probs=110.0
Q ss_pred hhhhhHhhcCCCCCcHH--HHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcC----
Q 038048 41 GDIFHVIHKVPSGDSPY--VRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGR---- 114 (575)
Q Consensus 41 ae~y~~~~~~ps~d~~y--arA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~ga---- 114 (575)
.+.|......+.....+ ..+..+++..++++.|+..+++.++.+|++..++..++.+|.+.|++++|++++...
T Consensus 138 ~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~ 217 (398)
T PRK10747 138 NQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH 217 (398)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC
Confidence 34444444433333222 245677889999999999999999999999999999999999999999999662111
Q ss_pred -HHHH-HH---------HHH------------HHHH----hhHHHHHHHhHHHHHHHHhch--------hhHHhhcCCcH
Q 038048 115 -IEEE-IE---------LLQ------------NKLK----NIEEGIAFAGVKTKMARSQGK--------KIQITVEQEKS 159 (575)
Q Consensus 115 -LeeA-i~---------lL~------------~~L~----l~~~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~ 159 (575)
++.. .. .+. .... ...........++..+...|+ ...+. .+.+.
T Consensus 218 ~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~~~~~ 296 (398)
T PRK10747 218 VGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK-RQYDE 296 (398)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCH
Confidence 1000 00 010 0000 011122233344555555554 11233 22233
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048 160 RILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNR 225 (575)
Q Consensus 160 ~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n 225 (575)
.+....+.+ ..+++++|++.+++.++.+|+++. ...+|.++..+|++++|..+|+++++..|++
T Consensus 297 ~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~ 361 (398)
T PRK10747 297 RLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA 361 (398)
T ss_pred HHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH
Confidence 222222222 337777777777777777777777 7777777777777777777777777777654
No 43
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.06 E-value=2.4e-09 Score=113.97 Aligned_cols=75 Identities=20% Similarity=0.205 Sum_probs=49.8
Q ss_pred HhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 152 ITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 152 L~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
+.++|++..+++++|.+|..+|++++|+..|++|+.++|++.. ++++|.+|..+|++++|+..|+++++++|++.
T Consensus 29 l~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~ 104 (356)
T PLN03088 29 IDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDS 104 (356)
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 3446666666666666666666666666666666666666666 66666666666666666666666666666543
No 44
>PLN02789 farnesyltranstransferase
Probab=99.05 E-value=1.9e-08 Score=105.93 Aligned_cols=152 Identities=12% Similarity=0.114 Sum_probs=108.1
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCC-CHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHH
Q 038048 64 QLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLD-RSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKM 142 (575)
Q Consensus 64 ~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqG-rydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~a 142 (575)
....+..++|+.++.++|.++|.+..+++..+.++..+| .+++|+..+..++....+.+..-. ..+.+
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~-----------~R~~~ 115 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWH-----------HRRWL 115 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhH-----------HHHHH
Confidence 345678999999999999999999999999999999998 578998886554443222111111 00000
Q ss_pred HHHhch----------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHc---CCH
Q 038048 143 ARSQGK----------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHM---NRV 208 (575)
Q Consensus 143 l~sqg~----------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~q---Gr~ 208 (575)
+...+. ..++.++|.+..+|++.|+++..+|+|++|++++.++|+++|.|.. +++.+.++... |++
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccc
Confidence 000000 2456778888888888888888888888888888888888888887 88888777665 333
Q ss_pred ----HHHHHHHHHHHHHcCCCC
Q 038048 209 ----TEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 209 ----eEAi~lLekALel~P~n~ 226 (575)
++++.+..+++.++|+|.
T Consensus 196 ~~~~e~el~y~~~aI~~~P~N~ 217 (320)
T PLN02789 196 EAMRDSELKYTIDAILANPRNE 217 (320)
T ss_pred cccHHHHHHHHHHHHHhCCCCc
Confidence 467777778888888765
No 45
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.04 E-value=1.1e-09 Score=112.81 Aligned_cols=109 Identities=20% Similarity=0.299 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch--------hhHHhhcCCcHHH
Q 038048 90 ALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK--------KIQITVEQEKSRI 161 (575)
Q Consensus 90 Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a 161 (575)
-+.+-|+-+.+.++|++|+..|..+ +.+.+.+..|+-+.+.+|...|. +.++.++|+...+
T Consensus 83 ~LK~eGN~~m~~~~Y~eAv~kY~~A-----------I~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yska 151 (304)
T KOG0553|consen 83 SLKNEGNKLMKNKDYQEAVDKYTEA-----------IELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKA 151 (304)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH-----------HhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHH
Confidence 3445566666667777766664443 33344444555566666666654 4567888888888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHH
Q 038048 162 LGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVT 209 (575)
Q Consensus 162 ~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~e 209 (575)
|..||.+|..+|+|++|+..|++||+|+|+|.. ..||..+-.++++..
T Consensus 152 y~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 152 YGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 888888888888888888888888888888887 667766655555544
No 46
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.04 E-value=3.9e-09 Score=115.99 Aligned_cols=184 Identities=16% Similarity=0.148 Sum_probs=116.9
Q ss_pred hhhhhHhh-cCCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHH---
Q 038048 41 GDIFHVIH-KVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIE--- 116 (575)
Q Consensus 41 ae~y~~~~-~~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLe--- 116 (575)
+-.|+... +.|..-..+-+.++++...++-..|+..++++++++|++..++..||..|...|.-.+|..++.+=+.
T Consensus 305 ~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p 384 (579)
T KOG1125|consen 305 ALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKP 384 (579)
T ss_pred HHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCc
Confidence 55666543 44444555666777777778888899999999999999999999999999999999999998211100
Q ss_pred -----------HH-------------HHHHHHHHH---hhH--HHHHHHhHHHHHHHHhch--------hhHHhhcCCcH
Q 038048 117 -----------EE-------------IELLQNKLK---NIE--EGIAFAGVKTKMARSQGK--------KIQITVEQEKS 159 (575)
Q Consensus 117 -----------eA-------------i~lL~~~L~---l~~--~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~ 159 (575)
+. ..+....+. ..+ .+......++.++...++ +.++.++|.+.
T Consensus 385 ~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~ 464 (579)
T KOG1125|consen 385 KYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDY 464 (579)
T ss_pred cchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchH
Confidence 00 000011110 000 011111112222211111 34566677777
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 038048 160 RILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGN 224 (575)
Q Consensus 160 ~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~ 224 (575)
.+|+.||-++..-.+..||+..|++||++.|.+.. ++|||+.++.+|-|+||+.+|-.||.+.+.
T Consensus 465 ~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 465 LLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred HHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 77777777777777777777777777777777776 777777777777777777777777776665
No 47
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.03 E-value=1.3e-08 Score=109.57 Aligned_cols=166 Identities=15% Similarity=0.005 Sum_probs=114.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHH-----HH-H-----H--------
Q 038048 60 AKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIE-----EE-I-----E-------- 120 (575)
Q Consensus 60 A~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLe-----eA-i-----~-------- 120 (575)
...+++..++++.|...++..++..|+++.++..++.+|.++|++++|++......+ .. . .
T Consensus 159 ~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~ 238 (409)
T TIGR00540 159 RTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDE 238 (409)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 356778899999999999999999999999999999999999999999988322211 00 0 0
Q ss_pred --------HHHHHHHhhH----HHHHHHhHHHHHHHHhch--------hhHHhhcCCcHHHH--HHHHHHHHHcCCHHHH
Q 038048 121 --------LLQNKLKNIE----EGIAFAGVKTKMARSQGK--------KIQITVEQEKSRIL--GNLAWAYMQQNNFEMA 178 (575)
Q Consensus 121 --------lL~~~L~l~~----~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~--~nLG~aY~~qGryeEA 178 (575)
.+.......+ ........++..+...|+ ...+...|++.... ......+...++.+++
T Consensus 239 ~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~ 318 (409)
T TIGR00540 239 AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKL 318 (409)
T ss_pred HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHH
Confidence 1111111111 123344455555555555 23455567766431 3334445556778888
Q ss_pred HHHHHHHHHhCCCCH--H-HHHHHHHHHHcCCHHHHHHHHH--HHHHHcCCC
Q 038048 179 EQYYRKALSLGVDMN--K-QCNLAICLMHMNRVTEAKSLLQ--AVKISAGNR 225 (575)
Q Consensus 179 e~~yrkALeidPdn~--~-~~NLA~iy~~qGr~eEAi~lLe--kALel~P~n 225 (575)
+..++++++.+|+++ . ...||.++..+|++++|..+|+ .+++.+|++
T Consensus 319 ~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~ 370 (409)
T TIGR00540 319 EKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA 370 (409)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH
Confidence 888888888888888 6 7788888888888888888888 566676754
No 48
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.01 E-value=5.4e-09 Score=111.27 Aligned_cols=51 Identities=16% Similarity=0.192 Sum_probs=31.7
Q ss_pred HHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHH
Q 038048 151 QITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAIC 201 (575)
Q Consensus 151 aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~i 201 (575)
++.++|++..+|+++|.+|..+|+|++|+.+|+++++++|++.. ...++.|
T Consensus 62 Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 62 AIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 35556666666666666666666666666666666666666665 4444444
No 49
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=1.2e-08 Score=110.43 Aligned_cols=49 Identities=16% Similarity=0.133 Sum_probs=38.2
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHH
Q 038048 62 HIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEA 110 (575)
Q Consensus 62 ~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~ 110 (575)
...+..+++++||.+|.+||.+.|+.+-.|.|++-+|...|+|++.++.
T Consensus 123 N~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied 171 (606)
T KOG0547|consen 123 NKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIED 171 (606)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHH
Confidence 4456788999999999999999988666677777777777777766655
No 50
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.98 E-value=2.4e-08 Score=110.73 Aligned_cols=160 Identities=21% Similarity=0.220 Sum_probs=113.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHH
Q 038048 60 AKHIQLIDKDPSRAVSLFWAAINA--------GDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEE 131 (575)
Q Consensus 60 A~~l~l~~kd~eeAi~lf~kAL~l--------~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~ 131 (575)
.+.+++..+++++|+.+|++|+.+ +|....++.+||.+|...|+|+||..++..+++.....+..... .
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~---~ 323 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHP---E 323 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChH---H
Confidence 445567789999999999999864 34456689999999999999999999976666654442222221 1
Q ss_pred HHHHHhHHHHHHHHhch--------hhHH---h--hcCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------
Q 038048 132 GIAFAGVKTKMARSQGK--------KIQI---T--VEQEK---SRILGNLAWAYMQQNNFEMAEQYYRKALSLG------ 189 (575)
Q Consensus 132 a~a~~~nla~al~sqg~--------k~aL---~--L~Pd~---~~a~~nLG~aY~~qGryeEAe~~yrkALeid------ 189 (575)
....+.+++.++...++ ..++ . ..+++ +..+.|||.+|..+|+|.||+.+|++||.+.
T Consensus 324 v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~ 403 (508)
T KOG1840|consen 324 VAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGK 403 (508)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccC
Confidence 11223333333333333 0111 1 12333 4589999999999999999999999999885
Q ss_pred --CCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 038048 190 --VDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISA 222 (575)
Q Consensus 190 --Pdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~ 222 (575)
+.... ..+||..|.+.+++.+|..+|..++.+.
T Consensus 404 ~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 404 KDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 22223 6789999999999999999999988875
No 51
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.97 E-value=1.1e-08 Score=88.71 Aligned_cols=101 Identities=18% Similarity=0.122 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCc---HHHHHHH
Q 038048 89 SALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEK---SRILGNL 165 (575)
Q Consensus 89 ~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~---~~a~~nL 165 (575)
.+++.+|..+..+|++++|+..+... +...|++ ..+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~-------------------------------------~~~~~~~~~~~~~~~~l 45 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAF-------------------------------------LKKYPKSTYAPNAHYWL 45 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH-------------------------------------HHHCCCccccHHHHHHH
Confidence 56889999999999999999985332 2234443 5689999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC---HH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 166 AWAYMQQNNFEMAEQYYRKALSLGVDM---NK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 166 G~aY~~qGryeEAe~~yrkALeidPdn---~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
|.+|...|++++|+.+|++++..+|++ .. ++++|.+|..+|++++|+.+|+++++..|++.
T Consensus 46 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 46 GEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCCh
Confidence 999999999999999999999999986 34 88999999999999999999999999999764
No 52
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.97 E-value=6e-09 Score=82.32 Aligned_cols=97 Identities=26% Similarity=0.303 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHH
Q 038048 90 ALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAY 169 (575)
Q Consensus 90 Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY 169 (575)
+++++|.++...|++++|+..+.. .+.+.|.+..+++.+|.+|
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~-------------------------------------~~~~~~~~~~~~~~~~~~~ 44 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEK-------------------------------------ALELDPDNADAYYNLAAAY 44 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHH-------------------------------------HHhcCCccHHHHHHHHHHH
Confidence 578899999999999999987433 2345677778999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Q 038048 170 MQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAG 223 (575)
Q Consensus 170 ~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P 223 (575)
..+|++++|+.+|++++.+.|.+.. +..+|.++..+|++++|..++++++...|
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 45 YKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 9999999999999999999999998 99999999999999999999999998776
No 53
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.96 E-value=1.1e-08 Score=118.73 Aligned_cols=69 Identities=13% Similarity=0.123 Sum_probs=63.7
Q ss_pred HHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038048 151 QITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKI 220 (575)
Q Consensus 151 aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALe 220 (575)
++...|++.. +..+|.+|..+|++++|+..|+++++++|++.. +..+|.++...|+.++|+..+++++.
T Consensus 109 ~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~ 178 (765)
T PRK10049 109 LVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL 178 (765)
T ss_pred HHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC
Confidence 4566899999 999999999999999999999999999999999 88999999999999999999987665
No 54
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.95 E-value=4.7e-08 Score=101.85 Aligned_cols=176 Identities=14% Similarity=0.158 Sum_probs=107.5
Q ss_pred cCCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHh----------------
Q 038048 49 KVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARS---------------- 112 (575)
Q Consensus 49 ~~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~---------------- 112 (575)
........|++. .-+++..++++|+.+|...++.+|...++...||++|.+.|..|.||.+-+
T Consensus 31 qa~~lsr~Yv~G-lNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lA 109 (389)
T COG2956 31 QANRLSRDYVKG-LNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLA 109 (389)
T ss_pred HHhhccHHHHhH-HHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 333456667765 445788899999999999999999999999999999999999999998821
Q ss_pred -----------cCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch--------hhHHhhcCCc-----HHHHHHHHHH
Q 038048 113 -----------GRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK--------KIQITVEQEK-----SRILGNLAWA 168 (575)
Q Consensus 113 -----------gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~--------k~aL~L~Pd~-----~~a~~nLG~a 168 (575)
|-++.|..++....+.-.-+......+..+|....+ +..+.+.+.. +..|..|+..
T Consensus 110 l~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~ 189 (389)
T COG2956 110 LQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQ 189 (389)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHH
Confidence 112222222221111000001111122222211111 1112222221 3356666666
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048 169 YMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNR 225 (575)
Q Consensus 169 Y~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n 225 (575)
+....+.+.|...+.+|++.+|.... .+-||.+++..|+|+.|++.++.+++.+|+.
T Consensus 190 ~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~y 247 (389)
T COG2956 190 ALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEY 247 (389)
T ss_pred HhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHH
Confidence 66667777777777777777777766 6667777777777777777777777766654
No 55
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.95 E-value=1.3e-08 Score=96.13 Aligned_cols=121 Identities=15% Similarity=0.114 Sum_probs=89.6
Q ss_pred cCChHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHH
Q 038048 67 DKDPSRAVSLFWAAINAGDRV--DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMAR 144 (575)
Q Consensus 67 ~kd~eeAi~lf~kAL~l~p~~--~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~ 144 (575)
++++..+...+...++..+.. ..+++++|.++..+|++++|+..+..++.
T Consensus 12 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~---------------------------- 63 (168)
T CHL00033 12 DKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMR---------------------------- 63 (168)
T ss_pred ccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----------------------------
Confidence 334444555554444444433 45789999999999999999998544322
Q ss_pred HhchhhHHhhcCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHH-------HcCCHHHHHH
Q 038048 145 SQGKKIQITVEQE---KSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLM-------HMNRVTEAKS 213 (575)
Q Consensus 145 sqg~k~aL~L~Pd---~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~-------~qGr~eEAi~ 213 (575)
+.++ ...+++++|.+|..+|++++|+.+|++|+.++|.+.. +.++|.+|. .+|++++|+.
T Consensus 64 ---------l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~ 134 (168)
T CHL00033 64 ---------LEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEA 134 (168)
T ss_pred ---------ccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHH
Confidence 2222 2458999999999999999999999999999999999 999999998 7888775555
Q ss_pred HHH-------HHHHHcCC
Q 038048 214 LLQ-------AVKISAGN 224 (575)
Q Consensus 214 lLe-------kALel~P~ 224 (575)
.++ +++..+|.
T Consensus 135 ~~~~a~~~~~~a~~~~p~ 152 (168)
T CHL00033 135 WFDQAAEYWKQAIALAPG 152 (168)
T ss_pred HHHHHHHHHHHHHHhCcc
Confidence 554 55555554
No 56
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.94 E-value=8.9e-09 Score=92.42 Aligned_cols=115 Identities=13% Similarity=0.029 Sum_probs=96.2
Q ss_pred hhhHhhcCCCCC-cHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHH
Q 038048 43 IFHVIHKVPSGD-SPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIEL 121 (575)
Q Consensus 43 ~y~~~~~~ps~d-~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~l 121 (575)
.|......++.+ ..+...+..++..+++++|+.+|++++..+|.+..+++++|.+|..+|++++|+.++..
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~-------- 76 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYAL-------- 76 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 344444443333 33445556677889999999999999999999999999999999999999999987433
Q ss_pred HHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048 122 LQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK 194 (575)
Q Consensus 122 L~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~ 194 (575)
++.++|++...++++|.+|..+|++++|+.+|+++++++|++..
T Consensus 77 -----------------------------~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 77 -----------------------------AAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred -----------------------------HHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 24568999999999999999999999999999999999999886
No 57
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.94 E-value=8.8e-09 Score=118.33 Aligned_cols=119 Identities=12% Similarity=0.033 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhh
Q 038048 71 SRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKI 150 (575)
Q Consensus 71 eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~ 150 (575)
.+++.-...-...-|....++.+||.+..++|+++||+.++..
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~------------------------------------- 111 (694)
T PRK15179 69 AAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRG------------------------------------- 111 (694)
T ss_pred HhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHH-------------------------------------
Confidence 3333333333445677789999999999999999999998433
Q ss_pred HHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 151 QITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 151 aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
++.++|++..+..+++.++.+++++++|+..++++|..+|+++. ++++|.++..+|++++|+.+|++++..+|++.
T Consensus 112 ~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~ 188 (694)
T PRK15179 112 IHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFE 188 (694)
T ss_pred HHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcH
Confidence 35679999999999999999999999999999999999999999 99999999999999999999999999777653
No 58
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.94 E-value=1.6e-08 Score=99.52 Aligned_cols=147 Identities=10% Similarity=-0.049 Sum_probs=106.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHH---HHHHHHHHHHHC--------CCHHHHHHHHhcCHHHHHHHHHHH
Q 038048 57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDS---ALKDMAVVMKQL--------DRSDEAIEARSGRIEEEIELLQNK 125 (575)
Q Consensus 57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~---Al~nLA~iy~qq--------GrydEAie~~~gaLeeAi~lL~~~ 125 (575)
+...+..+...+++++|+..|+++++..|+... +++.+|.++.+. |++++|++.+...+.........
T Consensus 73 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~- 151 (235)
T TIGR03302 73 QLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYA- 151 (235)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhH-
Confidence 344556778889999999999999999987654 799999999887 77888887755543321110000
Q ss_pred HHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---H-HHHHHHH
Q 038048 126 LKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMN---K-QCNLAIC 201 (575)
Q Consensus 126 L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~---~-~~NLA~i 201 (575)
......+... ..........+|.+|..+|++.+|+..|++++...|+.+ . ++++|.+
T Consensus 152 -------~~a~~~~~~~------------~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~ 212 (235)
T TIGR03302 152 -------PDAKKRMDYL------------RNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEA 212 (235)
T ss_pred -------HHHHHHHHHH------------HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHH
Confidence 0000000000 111122456899999999999999999999999988754 5 8999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHcC
Q 038048 202 LMHMNRVTEAKSLLQAVKISAG 223 (575)
Q Consensus 202 y~~qGr~eEAi~lLekALel~P 223 (575)
|..+|++++|+.+++.+....|
T Consensus 213 ~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 213 YLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHcCCHHHHHHHHHHHHhhCC
Confidence 9999999999999988776554
No 59
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.92 E-value=1.4e-08 Score=108.97 Aligned_cols=165 Identities=20% Similarity=0.209 Sum_probs=135.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcC-----------------------HHHH
Q 038048 62 HIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGR-----------------------IEEE 118 (575)
Q Consensus 62 ~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~ga-----------------------LeeA 118 (575)
.+.+..||+++|..+|+.||..+..-.++++|+|+.+..+|++++|++++.+. -..+
T Consensus 498 n~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqa 577 (840)
T KOG2003|consen 498 NIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQA 577 (840)
T ss_pred ceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHH
Confidence 34456899999999999999988888899999999999999999999983322 1134
Q ss_pred HHHHHHHHHhhHHHHHHHhHHHHHHHHhchhh-H-------HhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 038048 119 IELLQNKLKNIEEGIAFAGVKTKMARSQGKKI-Q-------ITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGV 190 (575)
Q Consensus 119 i~lL~~~L~l~~~a~a~~~nla~al~sqg~k~-a-------L~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidP 190 (575)
++.+.+...+++.+...+.+++++|...|++- + ...-|-+....-.||.-|....-+++|+.+|++|--+.|
T Consensus 578 ie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp 657 (840)
T KOG2003|consen 578 IELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQP 657 (840)
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc
Confidence 44555555566667777888888887777721 1 223477777888899999999999999999999999999
Q ss_pred CCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 191 DMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 191 dn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
+... ..-+|.|+.+.|+|..|..+|+.+-...|++.
T Consensus 658 ~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedl 694 (840)
T KOG2003|consen 658 NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDL 694 (840)
T ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccch
Confidence 9999 78899999999999999999999999999876
No 60
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.92 E-value=2e-08 Score=101.76 Aligned_cols=131 Identities=17% Similarity=0.159 Sum_probs=104.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHh
Q 038048 58 VRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAG 137 (575)
Q Consensus 58 arA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~ 137 (575)
++....+...|+-+.+..+..+++...+.....+..+|......|+|.+|+..+.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rk------------------------ 125 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRK------------------------ 125 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHH------------------------
Confidence 55445556677777777777777777777777777788888888888888887433
Q ss_pred HHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHH
Q 038048 138 VKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQ 216 (575)
Q Consensus 138 nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLe 216 (575)
+..++|++..+|+-+|.+|.+.|++++|...|.+|+++.|+.+. ..|||..|.-.|+++.|..++.
T Consensus 126 -------------A~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll 192 (257)
T COG5010 126 -------------AARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLL 192 (257)
T ss_pred -------------HhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHH
Confidence 35678888888888888888888888888888888888888888 8888888888888888888888
Q ss_pred HHHHHcCCC
Q 038048 217 AVKISAGNR 225 (575)
Q Consensus 217 kALel~P~n 225 (575)
.+...-+.+
T Consensus 193 ~a~l~~~ad 201 (257)
T COG5010 193 PAYLSPAAD 201 (257)
T ss_pred HHHhCCCCc
Confidence 887765544
No 61
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=1.9e-08 Score=108.46 Aligned_cols=144 Identities=18% Similarity=0.161 Sum_probs=123.1
Q ss_pred hhhhHhhcC-CCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHH
Q 038048 42 DIFHVIHKV-PSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIE 120 (575)
Q Consensus 42 e~y~~~~~~-ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~ 120 (575)
..|....+. |.-.....-.||.++-.++-..|+..|+.|+.++|.+-.+||+||.+|.-++...=|+=++++
T Consensus 351 ~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqk------- 423 (559)
T KOG1155|consen 351 MYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQK------- 423 (559)
T ss_pred HHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHH-------
Confidence 334433333 333445556778888889999999999999999999999999999999988887777766444
Q ss_pred HHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHH
Q 038048 121 LLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLA 199 (575)
Q Consensus 121 lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA 199 (575)
++.+.|++...|..||.+|.++++.++|+.+|.+|+....-+.. ++.||
T Consensus 424 ------------------------------A~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~La 473 (559)
T KOG1155|consen 424 ------------------------------ALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLA 473 (559)
T ss_pred ------------------------------HHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHH
Confidence 36789999999999999999999999999999999999888777 99999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHc
Q 038048 200 ICLMHMNRVTEAKSLLQAVKISA 222 (575)
Q Consensus 200 ~iy~~qGr~eEAi~lLekALel~ 222 (575)
.+|-++++..+|..+|++.++..
T Consensus 474 kLye~l~d~~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 474 KLYEELKDLNEAAQYYEKYVEVS 496 (559)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHH
Confidence 99999999999999999999954
No 62
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.90 E-value=3e-08 Score=115.92 Aligned_cols=156 Identities=8% Similarity=0.025 Sum_probs=109.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHH
Q 038048 60 AKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVK 139 (575)
Q Consensus 60 A~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nl 139 (575)
..++...+|+++.|+..|+++++.+|.+..+.+.++.++...|++++|+.+..+++.......... ..+
T Consensus 40 ~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~l-----------lal 108 (822)
T PRK14574 40 SLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGL-----------ASA 108 (822)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHH-----------HHH
Confidence 336668899999999999999999999875555999999999999999998655542100000000 000
Q ss_pred HHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHH
Q 038048 140 TKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQCNLAICLMHMNRVTEA 211 (575)
Q Consensus 140 a~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~~~NLA~iy~~qGr~eEA 211 (575)
+.++...|+ +.++..+|+++.++..|+.+|.+++++++|+..+++++..+|++.....++.++..+++..+|
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~A 188 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDA 188 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHH
Confidence 111111111 245677888888888778888888888888888888888888755554556666667777778
Q ss_pred HHHHHHHHHHcCCCC
Q 038048 212 KSLLQAVKISAGNRQ 226 (575)
Q Consensus 212 i~lLekALel~P~n~ 226 (575)
+..|+++++.+|++.
T Consensus 189 L~~~ekll~~~P~n~ 203 (822)
T PRK14574 189 LQASSEAVRLAPTSE 203 (822)
T ss_pred HHHHHHHHHhCCCCH
Confidence 888888888888764
No 63
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=2.3e-08 Score=108.45 Aligned_cols=167 Identities=16% Similarity=0.079 Sum_probs=108.3
Q ss_pred hhcCCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHH
Q 038048 47 IHKVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKL 126 (575)
Q Consensus 47 ~~~~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L 126 (575)
+...|.....|++...+++...+.++-...|.+|..++|.+++.||..|.++.-+++|++|+.-+.+++....+..-..+
T Consensus 353 I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~i 432 (606)
T KOG0547|consen 353 IKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYI 432 (606)
T ss_pred HhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHH
Confidence 33344444457777777777778888888888888888888888888888888888888888876665543332221111
Q ss_pred HhhHHHHHHHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------C
Q 038048 127 KNIEEGIAFAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVD------M 192 (575)
Q Consensus 127 ~l~~~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPd------n 192 (575)
. ++.++..+++ .-.+..=|.-+..++..|.++..+++|++|+..|.+|+++.|. +
T Consensus 433 Q-----------l~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~ 501 (606)
T KOG0547|consen 433 Q-----------LCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVN 501 (606)
T ss_pred H-----------HHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccccccc
Confidence 1 1111111111 1234445777777777778888888888888888888887777 5
Q ss_pred HH-HHHHHHHH-HHcCCHHHHHHHHHHHHHHcCC
Q 038048 193 NK-QCNLAICL-MHMNRVTEAKSLLQAVKISAGN 224 (575)
Q Consensus 193 ~~-~~NLA~iy-~~qGr~eEAi~lLekALel~P~ 224 (575)
+. +.+-|.+. .=.+++.+|+.++.++++++|.
T Consensus 502 ~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpk 535 (606)
T KOG0547|consen 502 AAPLVHKALLVLQWKEDINQAENLLRKAIELDPK 535 (606)
T ss_pred chhhhhhhHhhhchhhhHHHHHHHHHHHHccCch
Confidence 55 55544432 2237777788888888777775
No 64
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.88 E-value=4.9e-09 Score=83.55 Aligned_cols=63 Identities=22% Similarity=0.158 Sum_probs=59.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048 163 GNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNR 225 (575)
Q Consensus 163 ~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n 225 (575)
+.+|.+|+..|+|++|+.+|+++++.+|++.. ++.||.++..+|++++|+.+|+++++++|++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 46899999999999999999999999999999 9999999999999999999999999999975
No 65
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=6.2e-08 Score=103.45 Aligned_cols=169 Identities=13% Similarity=0.041 Sum_probs=130.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHH---HHHHHHH--------
Q 038048 58 VRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEI---ELLQNKL-------- 126 (575)
Q Consensus 58 arA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi---~lL~~~L-------- 126 (575)
+-++.+.+..+++..|+.+-+|+|..++++-.++...|.++.+.|+.++|+-+++.+...+. ..++..+
T Consensus 304 fV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 304 FVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhch
Confidence 33444556778899999999999999999988998899999999999999988655544432 1221111
Q ss_pred -----HhhHHHHHHHhHHHHHHHHhch-----------------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 038048 127 -----KNIEEGIAFAGVKTKMARSQGK-----------------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRK 184 (575)
Q Consensus 127 -----~l~~~a~a~~~nla~al~sqg~-----------------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrk 184 (575)
-+.......+++-++++.-.|. ...+.++|....+.+.++.++...|++++++.++++
T Consensus 384 ~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 384 FKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 1111222233344444443431 245888999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 185 ALSLGVDMNKQCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 185 ALeidPdn~~~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
+|.+.||..-+..||.++..++.+.+|..+|..||.++|++-
T Consensus 464 ~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 464 HLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred HHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 999999998899999999999999999999999999999753
No 66
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.88 E-value=4.1e-08 Score=112.97 Aligned_cols=189 Identities=16% Similarity=0.126 Sum_probs=134.9
Q ss_pred chhhhhhHhh-cCCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHCCCHHHHHHHHhcCHH
Q 038048 39 KKGDIFHVIH-KVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVD-SALKDMAVVMKQLDRSDEAIEARSGRIE 116 (575)
Q Consensus 39 ~Rae~y~~~~-~~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~-~Al~nLA~iy~qqGrydEAie~~~gaLe 116 (575)
+-..+|+.+. ..|.+-..+.--..+.+..+||-.|+.+|.++|..+|... +...++|.+++++|+.+.|+..+..+++
T Consensus 148 ~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralq 227 (1018)
T KOG2002|consen 148 DADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQ 227 (1018)
T ss_pred HHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHh
Confidence 4456777544 4444444444444566788999999999999999998764 4678899999999999999999877777
Q ss_pred HHHHHHHHHHHhhHHHH--------------------------HHHhHHHHHHHHhch-hh-------HHhh---cCCcH
Q 038048 117 EEIELLQNKLKNIEEGI--------------------------AFAGVKTKMARSQGK-KI-------QITV---EQEKS 159 (575)
Q Consensus 117 eAi~lL~~~L~l~~~a~--------------------------a~~~nla~al~sqg~-k~-------aL~L---~Pd~~ 159 (575)
.....+...+.+....+ .....++..+...++ .. ++.. .+--+
T Consensus 228 Ldp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~a 307 (1018)
T KOG2002|consen 228 LDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKA 307 (1018)
T ss_pred cChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHH
Confidence 55433333322111000 011122222222222 11 1111 23335
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCC
Q 038048 160 RILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK--QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQM 227 (575)
Q Consensus 160 ~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~--~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~ 227 (575)
..+|.+|..|..+|+|++|-.||.+++..+|++.. ++.||.+|+..|++++|+.+|+++++..|++..
T Consensus 308 es~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~e 377 (1018)
T KOG2002|consen 308 ESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYE 377 (1018)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHH
Confidence 57999999999999999999999999999999954 899999999999999999999999999998754
No 67
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.85 E-value=2.5e-08 Score=94.75 Aligned_cols=103 Identities=19% Similarity=0.224 Sum_probs=84.3
Q ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCC---cHHHH
Q 038048 86 RVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQE---KSRIL 162 (575)
Q Consensus 86 ~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd---~~~a~ 162 (575)
....+++++|.+|...|++++|+.++..++. +.|+ ...++
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~-------------------------------------~~~~~~~~~~~~ 75 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALK-------------------------------------LEEDPNDRSYIL 75 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------------------------------HhhccchHHHHH
Confidence 3456789999999999999999998554322 1221 24589
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCC--------------HHHHHHHHHHHHHHcCCC
Q 038048 163 GNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNR--------------VTEAKSLLQAVKISAGNR 225 (575)
Q Consensus 163 ~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr--------------~eEAi~lLekALel~P~n 225 (575)
.++|.+|..+|++++|+.+|++++.+.|++.. +.++|.+|..+|+ +++|++++++++..+|++
T Consensus 76 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 76 YNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 99999999999999999999999999999998 9999999999988 566777777777776654
No 68
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.84 E-value=6.3e-08 Score=98.26 Aligned_cols=123 Identities=20% Similarity=0.168 Sum_probs=110.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHH
Q 038048 60 AKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVK 139 (575)
Q Consensus 60 A~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nl 139 (575)
.+..++..|++..|+..|+++..+.|.+..++..+|.+|.+.|++++|...|.+
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~q-------------------------- 159 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQ-------------------------- 159 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHH--------------------------
Confidence 445568889999999999999999999999999999999999999999987544
Q ss_pred HHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHH
Q 038048 140 TKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAV 218 (575)
Q Consensus 140 a~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekA 218 (575)
++++.|..+.+++|||..|.-.|+++.|+.++.++...-+.+.. ..||+.+...+|++++|+.+..+-
T Consensus 160 -----------Al~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 160 -----------ALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred -----------HHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 35678999999999999999999999999999999998888888 999999999999999999886654
Q ss_pred H
Q 038048 219 K 219 (575)
Q Consensus 219 L 219 (575)
+
T Consensus 229 ~ 229 (257)
T COG5010 229 L 229 (257)
T ss_pred c
Confidence 3
No 69
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.84 E-value=4.2e-08 Score=101.73 Aligned_cols=72 Identities=8% Similarity=0.049 Sum_probs=37.2
Q ss_pred HHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 038048 151 QITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-----QCNLAICLMHMNRVTEAKSLLQAVKISA 222 (575)
Q Consensus 151 aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-----~~NLA~iy~~qGr~eEAi~lLekALel~ 222 (575)
.+.++|++..++..+|.+|..+|++++|+.+|++++...|.... +..+|.+|..+|++++|+.+|++++...
T Consensus 140 al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~ 216 (355)
T cd05804 140 ALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPS 216 (355)
T ss_pred HHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccc
Confidence 34445555555555555555555555555555555555442221 2345555555555555555555554433
No 70
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.83 E-value=4.6e-08 Score=96.04 Aligned_cols=117 Identities=15% Similarity=0.162 Sum_probs=99.2
Q ss_pred hhhhhH-hhcCCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHH-HHCCC--HHHHHHHHhcCHH
Q 038048 41 GDIFHV-IHKVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVM-KQLDR--SDEAIEARSGRIE 116 (575)
Q Consensus 41 ae~y~~-~~~~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy-~qqGr--ydEAie~~~gaLe 116 (575)
...+.. ....|.....+...+.++...+++++|+..|+++++++|++..++.++|.++ ...|+ +++|+.++..
T Consensus 59 i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~--- 135 (198)
T PRK10370 59 LQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDK--- 135 (198)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHH---
Confidence 344444 3445566667777888899999999999999999999999999999999975 78888 5899887433
Q ss_pred HHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048 117 EEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK 194 (575)
Q Consensus 117 eAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~ 194 (575)
++.++|++..++++||.++..+|+|++|+.+|+++++++|.+..
T Consensus 136 ----------------------------------al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 136 ----------------------------------ALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred ----------------------------------HHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 35679999999999999999999999999999999999988775
No 71
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=2.4e-07 Score=101.55 Aligned_cols=207 Identities=16% Similarity=0.122 Sum_probs=133.5
Q ss_pred CcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHH------HHHHHHHH
Q 038048 54 DSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEI------ELLQNKLK 127 (575)
Q Consensus 54 d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi------~lL~~~L~ 127 (575)
.-.+..++......++++.|++.|.++++++ .....+.+.|-+|+..|.+.+.+..-..+++.-. .++...+.
T Consensus 224 a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~ 302 (539)
T KOG0548|consen 224 AHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALA 302 (539)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHH
Confidence 3456667777778889999999999999999 7777888999999999999998876333222111 11111110
Q ss_pred h----------hHHHHHHHhHHHHHHHH------h---ch-----hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 038048 128 N----------IEEGIAFAGVKTKMARS------Q---GK-----KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYR 183 (575)
Q Consensus 128 l----------~~~a~a~~~nla~al~s------q---g~-----k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yr 183 (575)
. ...+..++.+...-++. . .+ .....++|+-..-.-.-|.-++..|+|.+|+.+|.
T Consensus 303 r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yt 382 (539)
T KOG0548|consen 303 RLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYT 382 (539)
T ss_pred HhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 0 00011111110000000 0 00 11234466666666677999999999999999999
Q ss_pred HHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCCh----hHHHHHHHHHHHHHHhccccccCcccccc
Q 038048 184 KALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMDT----SYSRSFERAIQMLTELESPSVLKLTELEV 258 (575)
Q Consensus 184 kALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~~~----~~l~slerA~elL~ele~al~~~p~~~e~ 258 (575)
+||..+|+++. ++|.|.||.++|.+.+|+...+++++++|+...+. ..+..+.+....+..+..++..+|...+.
T Consensus 383 eAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~ 462 (539)
T KOG0548|consen 383 EAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEA 462 (539)
T ss_pred HHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHH
Confidence 99999999999 99999999999999999999999999988754211 11122222333333344445555666655
Q ss_pred cch
Q 038048 259 GDD 261 (575)
Q Consensus 259 ~~~ 261 (575)
.+.
T Consensus 463 ~~~ 465 (539)
T KOG0548|consen 463 IDG 465 (539)
T ss_pred HHH
Confidence 444
No 72
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.79 E-value=9.6e-08 Score=91.00 Aligned_cols=98 Identities=12% Similarity=0.003 Sum_probs=87.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHH
Q 038048 60 AKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVK 139 (575)
Q Consensus 60 A~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nl 139 (575)
.+......|++++|+.+|+-....+|.+...+++||.++..+|+|.+|+.+|..
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~-------------------------- 94 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGR-------------------------- 94 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHH--------------------------
Confidence 334556789999999999999999999999999999999999999999998644
Q ss_pred HHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048 140 TKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK 194 (575)
Q Consensus 140 a~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~ 194 (575)
++.++|+++.+++|+|.+|+..|+.+.|+..|+.|+..--+++.
T Consensus 95 -----------A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~ 138 (157)
T PRK15363 95 -----------AAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSE 138 (157)
T ss_pred -----------HHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChh
Confidence 35679999999999999999999999999999999998744443
No 73
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.76 E-value=4.4e-07 Score=94.13 Aligned_cols=167 Identities=18% Similarity=0.136 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHH---HHHHHhh
Q 038048 56 PYVRAKHIQLIDKDPSRAVSLFWAAINAGDRV---DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELL---QNKLKNI 129 (575)
Q Consensus 56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~---~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL---~~~L~l~ 129 (575)
.|+..+......++++.|...|.++....+.. .+..+..|.++...|++++|+.++...++...... .......
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~ 87 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAF 87 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHH
Confidence 34444455666778888888888877766543 34566678888888888888887655544322110 0000000
Q ss_pred HHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCH
Q 038048 130 EEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRV 208 (575)
Q Consensus 130 ~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~ 208 (575)
..+ ...+....+.... .......|....++..+|.++..+|++++|+..++++++++|++.. +..+|.+|..+|++
T Consensus 88 ~~~-~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~ 164 (355)
T cd05804 88 GLG-DFSGMRDHVARVL--PLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRF 164 (355)
T ss_pred Hhc-ccccCchhHHHHH--hccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH
Confidence 000 0000000000000 0012345666678889999999999999999999999999999998 99999999999999
Q ss_pred HHHHHHHHHHHHHcCCC
Q 038048 209 TEAKSLLQAVKISAGNR 225 (575)
Q Consensus 209 eEAi~lLekALel~P~n 225 (575)
++|+.++++++...|.+
T Consensus 165 ~eA~~~l~~~l~~~~~~ 181 (355)
T cd05804 165 KEGIAFMESWRDTWDCS 181 (355)
T ss_pred HHHHHHHHhhhhccCCC
Confidence 99999999999988754
No 74
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.72 E-value=2.1e-07 Score=103.90 Aligned_cols=130 Identities=14% Similarity=0.004 Sum_probs=99.5
Q ss_pred ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch
Q 038048 69 DPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK 148 (575)
Q Consensus 69 d~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~ 148 (575)
+...|+.+|++|++++|+++.++..|+.+|.....+...-+ ..+..+...+...
T Consensus 357 ~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~---~~l~~a~~~~~~a----------------------- 410 (517)
T PRK10153 357 SLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDE---KQLAALSTELDNI----------------------- 410 (517)
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccH---HHHHHHHHHHHHh-----------------------
Confidence 47899999999999999999999999888866544432000 0000000000000
Q ss_pred hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 149 KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 149 k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
..+..++..+.++.-+|.++...|++++|+..|++|++++|+ .. +..+|.+|...|++++|+..|++|+.++|.++
T Consensus 411 -~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 411 -VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred -hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 112236666788999999999999999999999999999995 56 99999999999999999999999999999865
No 75
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.71 E-value=6.2e-07 Score=105.07 Aligned_cols=183 Identities=11% Similarity=0.044 Sum_probs=110.8
Q ss_pred hhhhHhhcCCCCCcHHHH--HHHHHHHcCChHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHCCCHHHHHHHHhc
Q 038048 42 DIFHVIHKVPSGDSPYVR--AKHIQLIDKDPSRAVSLFWAAINAGDR------VDSALKDMAVVMKQLDRSDEAIEARSG 113 (575)
Q Consensus 42 e~y~~~~~~ps~d~~yar--A~~l~l~~kd~eeAi~lf~kAL~l~p~------~~~Al~nLA~iy~qqGrydEAie~~~g 113 (575)
..|+........-+.|++ ++..++..+.|++|+.+|.+++...+. .......|-.+|++.++|++|..+...
T Consensus 313 ~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~ 392 (822)
T PRK14574 313 KEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVN 392 (822)
T ss_pred HHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 344444433333455665 444567778888888888888775421 222346777888888888888887433
Q ss_pred CHHHHHH---HHH-----------HHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHH
Q 038048 114 RIEEEIE---LLQ-----------NKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAE 179 (575)
Q Consensus 114 aLeeAi~---lL~-----------~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe 179 (575)
..+.... .++ ....+.-....+.+++..+.... ...+...|.+..++..+|.++...|.+.+|+
T Consensus 393 ~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~l--e~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~ 470 (822)
T PRK14574 393 YSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKL--EDLSSTAPANQNLRIALASIYLARDLPRKAE 470 (822)
T ss_pred HHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHH--HHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 3221110 000 00000000011112222221111 2235567888888888888888888888888
Q ss_pred HHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 180 QYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 180 ~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
..|+.++.++|++.. ...+|.+++.+|++.+|..+.+++++..|++.
T Consensus 471 ~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 471 QELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDI 518 (822)
T ss_pred HHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCch
Confidence 888888888888877 77888888888888888888888888888765
No 76
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.71 E-value=2.8e-07 Score=105.70 Aligned_cols=125 Identities=12% Similarity=0.045 Sum_probs=101.2
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHH
Q 038048 62 HIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTK 141 (575)
Q Consensus 62 ~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~ 141 (575)
...+..|+.++|+.++..+|..+|.+..+|+.||.+|.++|+.++|.....-
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~ll---------------------------- 198 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLL---------------------------- 198 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHH----------------------------
Confidence 3445669999999999999999999999999999999999999999876221
Q ss_pred HHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038048 142 MARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKI 220 (575)
Q Consensus 142 al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALe 220 (575)
+-.++|.+...|..++....++|++.+|.-+|.+||..+|.+.. .++.+.+|.++|++..|...|.+++.
T Consensus 199 ---------AAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~ 269 (895)
T KOG2076|consen 199 ---------AAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQ 269 (895)
T ss_pred ---------HHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHh
Confidence 12456777777777777777777777777777777777777777 77777777777777777777777777
Q ss_pred HcC
Q 038048 221 SAG 223 (575)
Q Consensus 221 l~P 223 (575)
..|
T Consensus 270 ~~p 272 (895)
T KOG2076|consen 270 LDP 272 (895)
T ss_pred hCC
Confidence 777
No 77
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.70 E-value=2.6e-07 Score=79.96 Aligned_cols=101 Identities=14% Similarity=0.055 Sum_probs=85.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHH
Q 038048 57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDRV---DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGI 133 (575)
Q Consensus 57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~---~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~ 133 (575)
++..+..+...+++++|+..|.+++..+|+. ..+++.+|.++...|++++|+.++...
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~------------------- 65 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAV------------------- 65 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHH-------------------
Confidence 4455567788999999999999999988775 568999999999999999999985332
Q ss_pred HHHhHHHHHHHHhchhhHHhhcCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048 134 AFAGVKTKMARSQGKKIQITVEQEK---SRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK 194 (575)
Q Consensus 134 a~~~nla~al~sqg~k~aL~L~Pd~---~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~ 194 (575)
+...|++ ..+++++|.+|..+|++++|+.+|+++++..|++..
T Consensus 66 ------------------~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 66 ------------------VKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred ------------------HHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 2334443 568999999999999999999999999999999875
No 78
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.70 E-value=5.3e-08 Score=78.17 Aligned_cols=67 Identities=27% Similarity=0.318 Sum_probs=61.0
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHH
Q 038048 87 VDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLA 166 (575)
Q Consensus 87 ~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG 166 (575)
++.+++.+|.++...|+|++|+.++.. ++.++|+++.+++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~-------------------------------------ai~~~p~~~~~~~~~g 44 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEK-------------------------------------AIELDPNNAEAYYNLG 44 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHH-------------------------------------HHHHSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHH-------------------------------------HHHcCCCCHHHHHHHH
Confidence 456889999999999999999998544 3567999999999999
Q ss_pred HHHHHcC-CHHHHHHHHHHHHHhCC
Q 038048 167 WAYMQQN-NFEMAEQYYRKALSLGV 190 (575)
Q Consensus 167 ~aY~~qG-ryeEAe~~yrkALeidP 190 (575)
.+|..+| ++++|+.+|++|++++|
T Consensus 45 ~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 45 LAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHhCccHHHHHHHHHHHHHcCc
Confidence 9999999 79999999999999998
No 79
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.70 E-value=1.8e-07 Score=73.76 Aligned_cols=97 Identities=21% Similarity=0.291 Sum_probs=83.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHh
Q 038048 58 VRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAG 137 (575)
Q Consensus 58 arA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~ 137 (575)
...+..+...+++++|+.+|.++++..|....+++.+|.+|...|++++|+.++...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~----------------------- 60 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA----------------------- 60 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------
Confidence 444556677899999999999999999998889999999999999999999874332
Q ss_pred HHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 038048 138 VKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVD 191 (575)
Q Consensus 138 nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPd 191 (575)
+.+.|.+..++..+|.++..+|++++|..++.+++.+.|+
T Consensus 61 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 61 --------------LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred --------------HhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 3446666789999999999999999999999999998874
No 80
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.69 E-value=4.3e-07 Score=94.97 Aligned_cols=160 Identities=13% Similarity=0.119 Sum_probs=95.6
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHH
Q 038048 64 QLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMA 143 (575)
Q Consensus 64 ~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al 143 (575)
+..-++|..|+..|.+.+..-|.+...+.++|.++..++++++|.++|...++......+..- -+..+ .++.+.-+++
T Consensus 266 Y~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiA-cia~~-yfY~~~PE~A 343 (478)
T KOG1129|consen 266 YQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIA-CIAVG-YFYDNNPEMA 343 (478)
T ss_pred HHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeee-eeeec-cccCCChHHH
Confidence 334456666777776666666666666666777777777777777665444331110000000 00000 0111111111
Q ss_pred HHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHH--HHHHHHHHHHcCCHHHHHHHHHHHH
Q 038048 144 RSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLG--VDMNK--QCNLAICLMHMNRVTEAKSLLQAVK 219 (575)
Q Consensus 144 ~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeid--Pdn~~--~~NLA~iy~~qGr~eEAi~lLekAL 219 (575)
..+. ++++.+.-.+++.++|+|.+++..++++-++..|++|+... |+... |+|||.+....|++.-|..+|+-+|
T Consensus 344 lryY-RRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL 422 (478)
T KOG1129|consen 344 LRYY-RRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLAL 422 (478)
T ss_pred HHHH-HHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHh
Confidence 1111 23455566677788888888888888888888888888764 44443 8888888888888888888888888
Q ss_pred HHcCCCC
Q 038048 220 ISAGNRQ 226 (575)
Q Consensus 220 el~P~n~ 226 (575)
..++++.
T Consensus 423 ~~d~~h~ 429 (478)
T KOG1129|consen 423 TSDAQHG 429 (478)
T ss_pred ccCcchH
Confidence 8777654
No 81
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.67 E-value=5.7e-07 Score=83.27 Aligned_cols=120 Identities=16% Similarity=0.024 Sum_probs=93.8
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhH
Q 038048 62 HIQLIDKDPSRAVSLFWAAINAGDRV---DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGV 138 (575)
Q Consensus 62 ~l~l~~kd~eeAi~lf~kAL~l~p~~---~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~n 138 (575)
......+++..+...+++.+...|+. ..+...+|.++...|++++|++.+...++.
T Consensus 19 ~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~--------------------- 77 (145)
T PF09976_consen 19 LQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN--------------------- 77 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---------------------
Confidence 33446789999999999999998887 457888999999999999999985443221
Q ss_pred HHHHHHHhchhhHHhhcCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHH
Q 038048 139 KTKMARSQGKKIQITVEQEK---SRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSL 214 (575)
Q Consensus 139 la~al~sqg~k~aL~L~Pd~---~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~l 214 (575)
.|++ ..+.+.||.++..+|+|++|+..++.+ .-.+-.+. ...+|.+|..+|++++|+..
T Consensus 78 ----------------~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~ 140 (145)
T PF09976_consen 78 ----------------APDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAA 140 (145)
T ss_pred ----------------CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 1222 237788999999999999999999662 22222223 66799999999999999999
Q ss_pred HHHHH
Q 038048 215 LQAVK 219 (575)
Q Consensus 215 LekAL 219 (575)
|+++|
T Consensus 141 y~~Al 145 (145)
T PF09976_consen 141 YQKAL 145 (145)
T ss_pred HHHhC
Confidence 99875
No 82
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.66 E-value=3.4e-07 Score=86.99 Aligned_cols=112 Identities=18% Similarity=0.276 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHH
Q 038048 56 PYVRAKHIQLIDKDPSRAVSLFWAAINAGDRV---DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEG 132 (575)
Q Consensus 56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~---~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a 132 (575)
.+...+..+...+++++|+.+|++++...++. ..+++++|.+|...|++++|+.++..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a------------------ 98 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQA------------------ 98 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------
Confidence 34556666778899999999999999877653 468999999999999999999985432
Q ss_pred HHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCCHHHHHH
Q 038048 133 IAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNN--------------FEMAEQYYRKALSLGVDMNKQCNL 198 (575)
Q Consensus 133 ~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGr--------------yeEAe~~yrkALeidPdn~~~~NL 198 (575)
+.+.|++..++.++|.+|..+|+ +++|++++++++.++|++. ..+
T Consensus 99 -------------------l~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~--~~~ 157 (172)
T PRK02603 99 -------------------LELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY--IEA 157 (172)
T ss_pred -------------------HHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH--HHH
Confidence 34567777888889999988887 6888888889999899874 333
Q ss_pred HHHHHHcC
Q 038048 199 AICLMHMN 206 (575)
Q Consensus 199 A~iy~~qG 206 (575)
+..+...|
T Consensus 158 ~~~~~~~~ 165 (172)
T PRK02603 158 QNWLKTTG 165 (172)
T ss_pred HHHHHhcC
Confidence 44444433
No 83
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=4.7e-07 Score=93.67 Aligned_cols=122 Identities=16% Similarity=0.109 Sum_probs=108.2
Q ss_pred CChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhc
Q 038048 68 KDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQG 147 (575)
Q Consensus 68 kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg 147 (575)
.+++..+.-.+..|+.+|++..-|..||.+|+.+|++..|...|..+
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A--------------------------------- 182 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNA--------------------------------- 182 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHH---------------------------------
Confidence 34777888888999999999999999999999999999999986543
Q ss_pred hhhHHhhcCCcHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Q 038048 148 KKIQITVEQEKSRILGNLAWAYMQQ---NNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAG 223 (575)
Q Consensus 148 ~k~aL~L~Pd~~~a~~nLG~aY~~q---GryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P 223 (575)
+.+.|++++++.-+|.++..+ ..-.+|..+|++||.+||++.. .+-||..+..+|+|.+|+..++..++..|
T Consensus 183 ----~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 183 ----LRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred ----HHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 567999999999999666654 3457899999999999999999 99999999999999999999999999988
Q ss_pred CCC
Q 038048 224 NRQ 226 (575)
Q Consensus 224 ~n~ 226 (575)
.+.
T Consensus 259 ~~~ 261 (287)
T COG4235 259 ADD 261 (287)
T ss_pred CCC
Confidence 654
No 84
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=3.8e-07 Score=100.47 Aligned_cols=150 Identities=16% Similarity=0.120 Sum_probs=119.0
Q ss_pred HhhcCCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHH
Q 038048 46 VIHKVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNK 125 (575)
Q Consensus 46 ~~~~~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~ 125 (575)
.....+.-.-|+...+..+...++.+.|..+|.+|+.+.|.++-.++.+|.+....+.|.+|+.+++.+++....++...
T Consensus 372 Aarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~ 451 (611)
T KOG1173|consen 372 AARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEK 451 (611)
T ss_pred HHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccc
Confidence 34444555556666666677788999999999999999999999999999999999999999999888774443333332
Q ss_pred HHhhHHHHHHHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HH
Q 038048 126 LKNIEEGIAFAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QC 196 (575)
Q Consensus 126 L~l~~~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~ 196 (575)
. .....+.|++-+++..++ +.++.+.|.+..++..+|.+|..+|+++.|+.+|.+||.++|++.. .-
T Consensus 452 ~----~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~ 527 (611)
T KOG1173|consen 452 I----FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISE 527 (611)
T ss_pred c----chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHH
Confidence 2 223456677777776666 4678999999999999999999999999999999999999999975 33
Q ss_pred HHH
Q 038048 197 NLA 199 (575)
Q Consensus 197 NLA 199 (575)
-|+
T Consensus 528 lL~ 530 (611)
T KOG1173|consen 528 LLK 530 (611)
T ss_pred HHH
Confidence 333
No 85
>PRK15331 chaperone protein SicA; Provisional
Probab=98.64 E-value=4.1e-07 Score=87.27 Aligned_cols=121 Identities=17% Similarity=0.106 Sum_probs=101.4
Q ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHH
Q 038048 85 DRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGN 164 (575)
Q Consensus 85 p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~n 164 (575)
++..+..|..|.-+.++|++++|+.+++- +...++.+.+.+..
T Consensus 34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~-------------------------------------L~~~d~~n~~Y~~G 76 (165)
T PRK15331 34 QDMMDGLYAHAYEFYNQGRLDEAETFFRF-------------------------------------LCIYDFYNPDYTMG 76 (165)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHH-------------------------------------HHHhCcCcHHHHHH
Confidence 33456789999999999999999998422 24468888999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHH
Q 038048 165 LAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMDTSYSRSFERAIQMLT 243 (575)
Q Consensus 165 LG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~~~~~l~slerA~elL~ 243 (575)
||.++..+++|++|+..|--|..++++++. .+..|.||+.+|+.++|+.+|+.+++ +|.+ ..-.++|+.+|.
T Consensus 77 Laa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~------~~l~~~A~~~L~ 149 (165)
T PRK15331 77 LAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTED------ESLRAKALVYLE 149 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-Ccch------HHHHHHHHHHHH
Confidence 999999999999999999999999999999 99999999999999999999999999 3432 233467777777
Q ss_pred Hhcccc
Q 038048 244 ELESPS 249 (575)
Q Consensus 244 ele~al 249 (575)
.+....
T Consensus 150 ~l~~~~ 155 (165)
T PRK15331 150 ALKTAE 155 (165)
T ss_pred HHHccc
Confidence 655443
No 86
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.62 E-value=1.2e-07 Score=75.46 Aligned_cols=65 Identities=26% Similarity=0.287 Sum_probs=56.9
Q ss_pred HHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHH
Q 038048 92 KDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQ 171 (575)
Q Consensus 92 ~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~ 171 (575)
+.+|.++.+.|++++|+.++.. ++...|++..+++.+|.++..
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~-------------------------------------~l~~~P~~~~a~~~lg~~~~~ 43 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQ-------------------------------------ALKQDPDNPEAWYLLGRILYQ 43 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHH-------------------------------------HHCCSTTHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHH-------------------------------------HHHHCCCCHHHHHHHHHHHHH
Confidence 4689999999999999998533 356789999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH
Q 038048 172 QNNFEMAEQYYRKALSLGVDMN 193 (575)
Q Consensus 172 qGryeEAe~~yrkALeidPdn~ 193 (575)
+|++++|+.+|+++++++|+++
T Consensus 44 ~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 44 QGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp TT-HHHHHHHHHHHHHHSTT-H
T ss_pred cCCHHHHHHHHHHHHHHCcCCC
Confidence 9999999999999999999985
No 87
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.62 E-value=1.7e-06 Score=94.17 Aligned_cols=125 Identities=17% Similarity=0.074 Sum_probs=113.1
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHH
Q 038048 62 HIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTK 141 (575)
Q Consensus 62 ~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~ 141 (575)
......+++++|+..++..+...|+++..+-..+.++...|+.++|++.+.+
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~k---------------------------- 365 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKK---------------------------- 365 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH----------------------------
Confidence 4556788999999999999999999999999999999999999999998433
Q ss_pred HHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038048 142 MARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKI 220 (575)
Q Consensus 142 al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALe 220 (575)
++.++|+..-...++|.+|++.|++.+|+..+.+.+.-+|+++. |.-||.+|..+|+..+|...+-+.+.
T Consensus 366 ---------al~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 366 ---------ALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred ---------HHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 35678998889999999999999999999999999999999999 99999999999999999888888777
Q ss_pred HcC
Q 038048 221 SAG 223 (575)
Q Consensus 221 l~P 223 (575)
...
T Consensus 437 ~~G 439 (484)
T COG4783 437 LAG 439 (484)
T ss_pred hCC
Confidence 654
No 88
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.60 E-value=9.1e-07 Score=83.52 Aligned_cols=103 Identities=16% Similarity=0.177 Sum_probs=76.8
Q ss_pred cHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHH
Q 038048 55 SPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRV---DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEE 131 (575)
Q Consensus 55 ~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~---~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~ 131 (575)
..+...+......+++++|+.+|++++.+.++. ..+++++|.+|...|++++|+.++..+
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~A----------------- 98 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQA----------------- 98 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH-----------------
Confidence 344556677778899999999999999887653 458999999999999999999985443
Q ss_pred HHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHH-------HcCCHH-------HHHHHHHHHHHhCCCCHH
Q 038048 132 GIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYM-------QQNNFE-------MAEQYYRKALSLGVDMNK 194 (575)
Q Consensus 132 a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~-------~qGrye-------EAe~~yrkALeidPdn~~ 194 (575)
+.++|.....+.++|.+|. .+|+++ +|+.+|++++..+|++..
T Consensus 99 --------------------l~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~ 155 (168)
T CHL00033 99 --------------------LERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYI 155 (168)
T ss_pred --------------------HHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHH
Confidence 2334555555566665555 778876 666666677778887663
No 89
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.59 E-value=5.3e-07 Score=105.57 Aligned_cols=141 Identities=14% Similarity=0.052 Sum_probs=110.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHH-HHhH
Q 038048 60 AKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIA-FAGV 138 (575)
Q Consensus 60 A~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a-~~~n 138 (575)
....+...+++++|+...+.++...|+...+++.+|.+|.+.+++++|.-. +.+.. +....+ ..... ++..
T Consensus 37 Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~----~~~~~~--~~~ve~~~~~ 108 (906)
T PRK14720 37 LIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDS----FSQNLK--WAIVEHICDK 108 (906)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh----cccccc--hhHHHHHHHH
Confidence 334445688999999999999999999999999999999999999998876 21111 000000 00001 1111
Q ss_pred HHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHH
Q 038048 139 KTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQA 217 (575)
Q Consensus 139 la~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLek 217 (575)
+.-.+++..+++.||.+|.++|++++|...|+++|+++|+|+. +.|+|..|... ++++|+.++.+
T Consensus 109 -------------i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~K 174 (906)
T PRK14720 109 -------------ILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKK 174 (906)
T ss_pred -------------HHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence 1224455569999999999999999999999999999999999 99999999999 99999999999
Q ss_pred HHHHc
Q 038048 218 VKISA 222 (575)
Q Consensus 218 ALel~ 222 (575)
|+...
T Consensus 175 AV~~~ 179 (906)
T PRK14720 175 AIYRF 179 (906)
T ss_pred HHHHH
Confidence 99864
No 90
>PLN02789 farnesyltranstransferase
Probab=98.59 E-value=2.2e-06 Score=90.47 Aligned_cols=148 Identities=8% Similarity=0.028 Sum_probs=110.9
Q ss_pred CChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCH--HHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHH
Q 038048 68 KDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRS--DEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARS 145 (575)
Q Consensus 68 kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGry--dEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~s 145 (575)
.++++|+.++.+++..+|++..++++.+.++...|+. ++++++...+++.. +.....+...+-++..
T Consensus 86 ~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-----------pkNy~AW~~R~w~l~~ 154 (320)
T PLN02789 86 ADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-----------AKNYHAWSHRQWVLRT 154 (320)
T ss_pred hhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-----------cccHHHHHHHHHHHHH
Confidence 3689999999999999999999999999999999874 45555543333322 2222222222222222
Q ss_pred hch--------hhHHhhcCCcHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHHhCCCCHH-HHHHHHHHHH----c
Q 038048 146 QGK--------KIQITVEQEKSRILGNLAWAYMQQ---NNF----EMAEQYYRKALSLGVDMNK-QCNLAICLMH----M 205 (575)
Q Consensus 146 qg~--------k~aL~L~Pd~~~a~~nLG~aY~~q---Gry----eEAe~~yrkALeidPdn~~-~~NLA~iy~~----q 205 (575)
.+. ..+|.++|.+..+|++.|.++..+ |.+ ++++.+..++|.++|+|.. ++.++.+|.. .
T Consensus 155 l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l 234 (320)
T PLN02789 155 LGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEAL 234 (320)
T ss_pred hhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCccc
Confidence 222 356888999999999999998876 333 5788899999999999999 9999999988 5
Q ss_pred CCHHHHHHHHHHHHHHcCCCC
Q 038048 206 NRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 206 Gr~eEAi~lLekALel~P~n~ 226 (575)
++..+|+..+.+++...+...
T Consensus 235 ~~~~~~~~~~~~~~~~~~~s~ 255 (320)
T PLN02789 235 VSDPEVSSVCLEVLSKDSNHV 255 (320)
T ss_pred ccchhHHHHHHHhhcccCCcH
Confidence 667889999999888766543
No 91
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.57 E-value=1e-07 Score=78.54 Aligned_cols=66 Identities=26% Similarity=0.338 Sum_probs=56.3
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---C-CC---HH-HHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 038048 157 EKSRILGNLAWAYMQQNNFEMAEQYYRKALSLG---V-DM---NK-QCNLAICLMHMNRVTEAKSLLQAVKISA 222 (575)
Q Consensus 157 d~~~a~~nLG~aY~~qGryeEAe~~yrkALeid---P-dn---~~-~~NLA~iy~~qGr~eEAi~lLekALel~ 222 (575)
+-..+++++|.+|..+|+|++|+.+|++|+++. + ++ .. +.|||.+|..+|++++|+.++++++++.
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 345689999999999999999999999999772 2 22 23 7899999999999999999999999874
No 92
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.56 E-value=2.2e-07 Score=101.09 Aligned_cols=70 Identities=16% Similarity=0.130 Sum_probs=66.2
Q ss_pred hhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---H-HHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 038048 153 TVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMN---K-QCNLAICLMHMNRVTEAKSLLQAVKISA 222 (575)
Q Consensus 153 ~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~---~-~~NLA~iy~~qGr~eEAi~lLekALel~ 222 (575)
..+|+++.+++|+|.+|..+|+|++|+.+|++||+++|++. . ++|+|.+|..+|++++|+.+|++++++.
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 34789999999999999999999999999999999999998 3 8999999999999999999999999973
No 93
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.56 E-value=5.4e-06 Score=86.77 Aligned_cols=182 Identities=13% Similarity=0.108 Sum_probs=124.8
Q ss_pred hhhhhHhhcCCC-CCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc-----HHHHHHHHHHHHHCCCHHHHHHHHhcC
Q 038048 41 GDIFHVIHKVPS-GDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRV-----DSALKDMAVVMKQLDRSDEAIEARSGR 114 (575)
Q Consensus 41 ae~y~~~~~~ps-~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~-----~~Al~nLA~iy~qqGrydEAie~~~ga 114 (575)
.+.|--+...++ .-....-.+.++...|..|.||..-+..+.. |+. .-+++.||.-|+..|=+|.|+.++..-
T Consensus 55 vdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L 133 (389)
T COG2956 55 VDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQL 133 (389)
T ss_pred HHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 444544333333 3333444667778888999999888665543 433 247888999999999999999885444
Q ss_pred HHH---HHHHHHHHHHhhHHHHH--------------------------HHhHHHHHHHHhch--------hhHHhhcCC
Q 038048 115 IEE---EIELLQNKLKNIEEGIA--------------------------FAGVKTKMARSQGK--------KIQITVEQE 157 (575)
Q Consensus 115 Lee---Ai~lL~~~L~l~~~a~a--------------------------~~~nla~al~sqg~--------k~aL~L~Pd 157 (575)
.++ +...+++.+. +|+... ++=.++..+....+ ++++..+|.
T Consensus 134 ~de~efa~~AlqqLl~-IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~ 212 (389)
T COG2956 134 VDEGEFAEGALQQLLN-IYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK 212 (389)
T ss_pred hcchhhhHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc
Confidence 331 1222222111 011111 11111111111111 356778999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 038048 158 KSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK--QCNLAICLMHMNRVTEAKSLLQAVKISAGN 224 (575)
Q Consensus 158 ~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~--~~NLA~iy~~qGr~eEAi~lLekALel~P~ 224 (575)
...+-..||.++...|+|+.|+..++.+++.+|+... .-.|..+|..+|+.++.+..+.++.+..+.
T Consensus 213 cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 213 CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 9999999999999999999999999999999999998 667999999999999999999999998774
No 94
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.56 E-value=8.6e-07 Score=91.13 Aligned_cols=101 Identities=13% Similarity=0.093 Sum_probs=85.3
Q ss_pred HHHHHHHHHH-HHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCc---HHHHHH
Q 038048 89 SALKDMAVVM-KQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEK---SRILGN 164 (575)
Q Consensus 89 ~Al~nLA~iy-~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~---~~a~~n 164 (575)
...|..|..+ ++.|+|++|+..+... +...|+. +.+++.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~f-------------------------------------l~~yP~s~~a~~A~y~ 185 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNF-------------------------------------VKKYPDSTYQPNANYW 185 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH-------------------------------------HHHCcCCcchHHHHHH
Confidence 5677777776 6679999999874331 3345655 579999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCH---H-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 165 LAWAYMQQNNFEMAEQYYRKALSLGVDMN---K-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 165 LG~aY~~qGryeEAe~~yrkALeidPdn~---~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
||.+|+.+|+|++|+..|++++..+|+++ . ++.+|.+|..+|++++|+.+|+++++..|+..
T Consensus 186 LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 186 LGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 99999999999999999999999999865 3 88999999999999999999999999999754
No 95
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.56 E-value=3.4e-06 Score=97.67 Aligned_cols=170 Identities=13% Similarity=0.092 Sum_probs=109.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHCCCHHHHHHHHhcCH--------------------
Q 038048 57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDRV-DSALKDMAVVMKQLDRSDEAIEARSGRI-------------------- 115 (575)
Q Consensus 57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~-~~Al~nLA~iy~qqGrydEAie~~~gaL-------------------- 115 (575)
|+..++.+-..||+++|-.+|.++++.++++ .-.+++||.+|+..|++++|+.++...+
T Consensus 310 ~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~ 389 (1018)
T KOG2002|consen 310 FYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHS 389 (1018)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhh
Confidence 3344444455677777777777777777666 4566777777777777777776622221
Q ss_pred -------HHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch-------hhHH-----hhcCCcHHHHHHHHHHHHHcCCHH
Q 038048 116 -------EEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK-------KIQI-----TVEQEKSRILGNLAWAYMQQNNFE 176 (575)
Q Consensus 116 -------eeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~-------k~aL-----~L~Pd~~~a~~nLG~aY~~qGrye 176 (575)
+.+..+++..+...+.+...+-.++.++..... ..++ ...+=++..++|+|..++.+|++.
T Consensus 390 ~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~ 469 (1018)
T KOG2002|consen 390 AKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIE 469 (1018)
T ss_pred hhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChH
Confidence 233334444443222222223333333222111 0111 113456679999999999999999
Q ss_pred HHHHHHHHHHHh-----CCCC-----HH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 177 MAEQYYRKALSL-----GVDM-----NK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 177 EAe~~yrkALei-----dPdn-----~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
+|...|.+|+.. +++. .. .||||.++-..++++.|..+|..+++.+|...
T Consensus 470 ~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YI 530 (1018)
T KOG2002|consen 470 KALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYI 530 (1018)
T ss_pred HHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhH
Confidence 999999999987 3333 23 78999999999999999999999999998653
No 96
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.54 E-value=4.4e-07 Score=76.19 Aligned_cols=43 Identities=19% Similarity=0.185 Sum_probs=24.2
Q ss_pred CChHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHCCCHHHHHHH
Q 038048 68 KDPSRAVSLFWAAINAGDR--VDSALKDMAVVMKQLDRSDEAIEA 110 (575)
Q Consensus 68 kd~eeAi~lf~kAL~l~p~--~~~Al~nLA~iy~qqGrydEAie~ 110 (575)
++++.|+.+|++++...|. +...++.||.+|.++|+|++|+.+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~ 47 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIEL 47 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4566666666666665553 233455556666666666666655
No 97
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.54 E-value=6.8e-06 Score=88.59 Aligned_cols=167 Identities=14% Similarity=0.103 Sum_probs=110.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHH-HHHHHHHHHCCCHHHHHHHHhc-----------------------
Q 038048 58 VRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSAL-KDMAVVMKQLDRSDEAIEARSG----------------------- 113 (575)
Q Consensus 58 arA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al-~nLA~iy~qqGrydEAie~~~g----------------------- 113 (575)
.-+.......|+++.|..+|.++.+.+|+...+. ...+.++...|++++|+..+..
T Consensus 122 llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~g 201 (398)
T PRK10747 122 LLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTG 201 (398)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 3345556788999999999999999988875433 3448999999999999998333
Q ss_pred CHHHHHHHHHHHHHhh---HHHH------HHHhHHHHHHHHhchh-------hHHhhcCCcHHHHHHHHHHHHHcCCHHH
Q 038048 114 RIEEEIELLQNKLKNI---EEGI------AFAGVKTKMARSQGKK-------IQITVEQEKSRILGNLAWAYMQQNNFEM 177 (575)
Q Consensus 114 aLeeAi~lL~~~L~l~---~~a~------a~~~nla~al~sqg~k-------~aL~L~Pd~~~a~~nLG~aY~~qGryeE 177 (575)
.++.+..++....+.. .... .+...........+.. ......|+++.++..+|..+...|+.++
T Consensus 202 dw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~ 281 (398)
T PRK10747 202 AWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDT 281 (398)
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHH
Confidence 3333333333333210 0000 0011111111111110 1112346788899999999999999999
Q ss_pred HHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCC
Q 038048 178 AEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQM 227 (575)
Q Consensus 178 Ae~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~ 227 (575)
|+..++++++..| +.. ..-++.+ ..++.+++++.+++.++.+|+++.
T Consensus 282 A~~~L~~~l~~~~-~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~ 329 (398)
T PRK10747 282 AQQIILDGLKRQY-DERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPL 329 (398)
T ss_pred HHHHHHHHHhcCC-CHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHH
Confidence 9999999999544 443 3333333 459999999999999999998863
No 98
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.53 E-value=1.9e-07 Score=78.38 Aligned_cols=60 Identities=33% Similarity=0.425 Sum_probs=54.3
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHH
Q 038048 158 KSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAV 218 (575)
Q Consensus 158 ~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekA 218 (575)
+..++++||.+|+++|+|++|+.++++ +.++|.+.. .+-+|.+|..+|++++|+.+|+++
T Consensus 24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 24 NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 455788899999999999999999999 889998888 888899999999999999999875
No 99
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.53 E-value=1e-06 Score=99.79 Aligned_cols=130 Identities=16% Similarity=0.110 Sum_probs=117.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHH
Q 038048 60 AKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVK 139 (575)
Q Consensus 60 A~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nl 139 (575)
+.......+..++|......|-.+.+-....|+..|.++..+|++.||.+.|..
T Consensus 656 aa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~-------------------------- 709 (799)
T KOG4162|consen 656 AADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLV-------------------------- 709 (799)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHH--------------------------
Confidence 334455667888998888889899999999999999999999999999998533
Q ss_pred HHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHH
Q 038048 140 TKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQ--YYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQ 216 (575)
Q Consensus 140 a~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~--~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLe 216 (575)
++.++|++..++..||.+|.+.|+..-|+. ++..|++++|.|.+ |++||.++..+|+.++|..+|+
T Consensus 710 -----------Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 710 -----------ALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQ 778 (799)
T ss_pred -----------HHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHH
Confidence 357899999999999999999999999999 99999999999999 9999999999999999999999
Q ss_pred HHHHHcCCCC
Q 038048 217 AVKISAGNRQ 226 (575)
Q Consensus 217 kALel~P~n~ 226 (575)
.++++.+.++
T Consensus 779 aa~qLe~S~P 788 (799)
T KOG4162|consen 779 AALQLEESNP 788 (799)
T ss_pred HHHhhccCCC
Confidence 9999988765
No 100
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.53 E-value=3.1e-07 Score=98.23 Aligned_cols=179 Identities=17% Similarity=0.171 Sum_probs=127.6
Q ss_pred hhHhhcCCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHCCCHHHHHHH---------
Q 038048 44 FHVIHKVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVD----SALKDMAVVMKQLDRSDEAIEA--------- 110 (575)
Q Consensus 44 y~~~~~~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~----~Al~nLA~iy~qqGrydEAie~--------- 110 (575)
||+....+..-..++..+.-....+|....+.+|++||+.+..+. .+|..||++|.-+++|++|+++
T Consensus 7 ~h~~~~q~~SCleLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar 86 (639)
T KOG1130|consen 7 FHVRYMQDRSCLELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLAR 86 (639)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHH
Confidence 666655555556666666667788899999999999999887653 4577899999999999999988
Q ss_pred --------------------HhcCHHHHHHHHHHHHHhhHH------HHHHHhHHHHHHHHhch----------------
Q 038048 111 --------------------RSGRIEEEIELLQNKLKNIEE------GIAFAGVKTKMARSQGK---------------- 148 (575)
Q Consensus 111 --------------------~~gaLeeAi~lL~~~L~l~~~------a~a~~~nla~al~sqg~---------------- 148 (575)
..+++++++....+.+.+..+ ....+.|++..|...|+
T Consensus 87 ~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~e 166 (639)
T KOG1130|consen 87 LLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAE 166 (639)
T ss_pred HhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHH
Confidence 345556665444444432111 11235677777766665
Q ss_pred -----hh-------HHhh--cCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHH
Q 038048 149 -----KI-------QITV--EQE----KSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-------QCNLAICLM 203 (575)
Q Consensus 149 -----k~-------aL~L--~Pd----~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-------~~NLA~iy~ 203 (575)
.. -+.+ +-. ...++.|||.+|+-+|+|++|+..-+.-|.|...+-. +.|||++++
T Consensus 167 v~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hi 246 (639)
T KOG1130|consen 167 VTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHI 246 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhh
Confidence 00 0111 111 1238899999999999999999999998888655442 569999999
Q ss_pred HcCCHHHHHHHHHHHHHHc
Q 038048 204 HMNRVTEAKSLLQAVKISA 222 (575)
Q Consensus 204 ~qGr~eEAi~lLekALel~ 222 (575)
-.|+++.|+++|++++.+-
T Consensus 247 flg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 247 FLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred hhcccHhHHHHHHHHHHHH
Confidence 9999999999999987753
No 101
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.51 E-value=5.4e-06 Score=84.34 Aligned_cols=157 Identities=15% Similarity=0.048 Sum_probs=122.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhH
Q 038048 59 RAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGV 138 (575)
Q Consensus 59 rA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~n 138 (575)
+..+.++..+..+-|...+.+....-|++......-|..+...|++++|+++|..-+++.+ .+..++.+
T Consensus 57 qV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddp-----------t~~v~~KR 125 (289)
T KOG3060|consen 57 QVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDP-----------TDTVIRKR 125 (289)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCc-----------chhHHHHH
Confidence 4555667778889999999887777788888877889999999999999999766555432 12222223
Q ss_pred HHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcC---
Q 038048 139 KTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMN--- 206 (575)
Q Consensus 139 la~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qG--- 206 (575)
...++..+|+ ...+..-+.+.++|..|+.+|...|+|++|.-+|++.+-+.|-++. ...||.++..+|
T Consensus 126 KlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~e 205 (289)
T KOG3060|consen 126 KLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAE 205 (289)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHH
Confidence 3333444444 1235556888999999999999999999999999999999999999 888999988776
Q ss_pred CHHHHHHHHHHHHHHcCCCC
Q 038048 207 RVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 207 r~eEAi~lLekALel~P~n~ 226 (575)
++.-|.++|.++++++|.+.
T Consensus 206 N~~~arkyy~~alkl~~~~~ 225 (289)
T KOG3060|consen 206 NLELARKYYERALKLNPKNL 225 (289)
T ss_pred HHHHHHHHHHHHHHhChHhH
Confidence 45679999999999999654
No 102
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.51 E-value=2.4e-07 Score=74.05 Aligned_cols=57 Identities=23% Similarity=0.336 Sum_probs=53.2
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048 169 YMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNR 225 (575)
Q Consensus 169 Y~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n 225 (575)
+++.|+|++|+.+|++++..+|++.. ++.||.+|..+|++++|..++++++..+|++
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 46889999999999999999999999 9999999999999999999999999999864
No 103
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=1.1e-06 Score=94.04 Aligned_cols=178 Identities=15% Similarity=0.112 Sum_probs=131.8
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHH-HhhHHHHHHHhHHHHH
Q 038048 64 QLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKL-KNIEEGIAFAGVKTKM 142 (575)
Q Consensus 64 ~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L-~l~~~a~a~~~nla~a 142 (575)
..+.+++++|...--..+++++.+.++++--|.++...++.+.|+..+++.+........... .........+.+.+..
T Consensus 179 l~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~ 258 (486)
T KOG0550|consen 179 LAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGND 258 (486)
T ss_pred hhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhh
Confidence 466789999999998999999999999999999999999999999998887765443222111 0111111111222222
Q ss_pred HHHhch--------hhHHhhcCCcHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHH
Q 038048 143 ARSQGK--------KIQITVEQEKSR----ILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVT 209 (575)
Q Consensus 143 l~sqg~--------k~aL~L~Pd~~~----a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~e 209 (575)
+...|. ..+|.++|++.. .|.|+|.+...+|+..+|+..-..|+.|+|.... +...|.|++.+++|+
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e 338 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWE 338 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 222222 346888887643 7899999999999999999999999999999999 889999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHHHh
Q 038048 210 EAKSLLQAVKISAGNRQMDTSYSRSFERAIQMLTEL 245 (575)
Q Consensus 210 EAi~lLekALel~P~n~~~~~~l~slerA~elL~el 245 (575)
+|++.|+++++...+ . ..-.++.+|+..|+..
T Consensus 339 ~AV~d~~~a~q~~~s-~---e~r~~l~~A~~aLkkS 370 (486)
T KOG0550|consen 339 EAVEDYEKAMQLEKD-C---EIRRTLREAQLALKKS 370 (486)
T ss_pred HHHHHHHHHHhhccc-c---chHHHHHHHHHHHHHh
Confidence 999999999998654 2 2235666777776643
No 104
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.50 E-value=5.1e-06 Score=87.55 Aligned_cols=183 Identities=13% Similarity=0.102 Sum_probs=127.6
Q ss_pred hhhHhh-cCCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHH--
Q 038048 43 IFHVIH-KVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEI-- 119 (575)
Q Consensus 43 ~y~~~~-~~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi-- 119 (575)
.||... ..|...-.+++-+.+++..|.-.-|+.-+.++|++.|++..|....|.+++++|++++|+.-+...+....
T Consensus 60 ~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~ 139 (504)
T KOG0624|consen 60 HYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSN 139 (504)
T ss_pred HHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCc
Confidence 455433 33333444555556667777777778888888888888877887888888888888888877544443211
Q ss_pred -HHHHHHHH--hhHHHHHHHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 038048 120 -ELLQNKLK--NIEEGIAFAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSL 188 (575)
Q Consensus 120 -~lL~~~L~--l~~~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALei 188 (575)
...+..-+ .+.........+. .+...|+ ..++++.|=+...+...+.+|...|....|+.-++.|-++
T Consensus 140 ~~~~eaqskl~~~~e~~~l~~ql~-s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askL 218 (504)
T KOG0624|consen 140 GLVLEAQSKLALIQEHWVLVQQLK-SASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKL 218 (504)
T ss_pred chhHHHHHHHHhHHHHHHHHHHHH-HHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 11111000 1100001111111 1111112 3467888989999999999999999999999999999999
Q ss_pred CCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 189 GVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 189 dPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
..|+-+ ++.++.+|...|+.+.++...+..|+++|++.
T Consensus 219 s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK 257 (504)
T KOG0624|consen 219 SQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHK 257 (504)
T ss_pred cccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchh
Confidence 999999 99999999999999999999999999999864
No 105
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=6.4e-06 Score=88.43 Aligned_cols=212 Identities=11% Similarity=0.071 Sum_probs=130.2
Q ss_pred cCCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHH------------------
Q 038048 49 KVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEA------------------ 110 (575)
Q Consensus 49 ~~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~------------------ 110 (575)
..+...-.+...+.+..+.||.++|+..|+++.-++|....++--.|.++.+.|++++-..+
T Consensus 227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~ 306 (564)
T KOG1174|consen 227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVH 306 (564)
T ss_pred cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhh
Confidence 33444444455666778889999999999999999998888877778888888888876655
Q ss_pred -----HhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCH--
Q 038048 111 -----RSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNF-- 175 (575)
Q Consensus 111 -----~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGry-- 175 (575)
+.+.++.+.....+.++.-+.....+--.+.++...++ +.++.+.|...+.|-.|--.|+..|++
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHH
Confidence 22333333333333332111111111111111111111 123334444444444444444444444
Q ss_pred ----------------------------------HHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038048 176 ----------------------------------EMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKI 220 (575)
Q Consensus 176 ----------------------------------eEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALe 220 (575)
++|..+|+++|.+.|+... ...+|.++...|++++++.+++++|.
T Consensus 387 A~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~ 466 (564)
T KOG1174|consen 387 ANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI 466 (564)
T ss_pred HHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh
Confidence 4556777778888888888 77889999999999999999999999
Q ss_pred HcCCCCCChhHH----HHHHHHHHHHHHhccccccCcccccccch
Q 038048 221 SAGNRQMDTSYS----RSFERAIQMLTELESPSVLKLTELEVGDD 261 (575)
Q Consensus 221 l~P~n~~~~~~l----~slerA~elL~ele~al~~~p~~~e~~~~ 261 (575)
..+++. -..++ ...+..++.+..+..++.++|..+....-
T Consensus 467 ~~~D~~-LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~G 510 (564)
T KOG1174|consen 467 IFPDVN-LHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRG 510 (564)
T ss_pred hccccH-HHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHH
Confidence 988753 11222 23344566666777888889988855433
No 106
>PRK11906 transcriptional regulator; Provisional
Probab=98.47 E-value=2.6e-06 Score=93.01 Aligned_cols=136 Identities=16% Similarity=0.149 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHcC---ChHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHC---CCHH--HHHHHHhcCHHHHHHHHHH
Q 038048 56 PYVRAKHIQLIDK---DPSRAVSLFWAAI---NAGDRVDSALKDMAVVMKQL---DRSD--EAIEARSGRIEEEIELLQN 124 (575)
Q Consensus 56 ~yarA~~l~l~~k---d~eeAi~lf~kAL---~l~p~~~~Al~nLA~iy~qq---Gryd--EAie~~~gaLeeAi~lL~~ 124 (575)
.|.++... +.++ +.+.|+.+|.+|+ .++|....+|..+|.++... |-.+ .+... +....
T Consensus 258 ~ylrg~~~-~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~-------a~~~A-- 327 (458)
T PRK11906 258 EMLAGKKE-LYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQK-------ALELL-- 327 (458)
T ss_pred HHHHHHHH-hhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHH-------HHHHH--
Confidence 35555433 3333 4577899999999 99999999999999998765 1111 11110 00000
Q ss_pred HHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHH
Q 038048 125 KLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLM 203 (575)
Q Consensus 125 ~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~ 203 (575)
.++++++|.++.++..+|.++...++++.|+..|++|+.++|+.+. ++-+|.++.
T Consensus 328 ------------------------~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~ 383 (458)
T PRK11906 328 ------------------------DYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHF 383 (458)
T ss_pred ------------------------HHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHH
Confidence 2468899999999999999999999999999999999999999999 999999999
Q ss_pred HcCCHHHHHHHHHHHHHHcCCC
Q 038048 204 HMNRVTEAKSLLQAVKISAGNR 225 (575)
Q Consensus 204 ~qGr~eEAi~lLekALel~P~n 225 (575)
..|+.++|...++++++++|.-
T Consensus 384 ~~G~~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 384 HNEKIEEARICIDKSLQLEPRR 405 (458)
T ss_pred HcCCHHHHHHHHHHHhccCchh
Confidence 9999999999999999999953
No 107
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.46 E-value=1.5e-06 Score=79.49 Aligned_cols=97 Identities=24% Similarity=0.231 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhh-cCCcHHHHHHHHH
Q 038048 89 SALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITV-EQEKSRILGNLAW 167 (575)
Q Consensus 89 ~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L-~Pd~~~a~~nLG~ 167 (575)
.++|.+|.++..+|+.++|+.+|..+++. -+ .+.-..++..+|.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----------------------------------gL~~~~~~~a~i~las 46 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA-----------------------------------GLSGADRRRALIQLAS 46 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----------------------------------CCCchHHHHHHHHHHH
Confidence 46789999999999999999997765431 01 1222348899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCC---CHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038048 168 AYMQQNNFEMAEQYYRKALSLGVD---MNK-QCNLAICLMHMNRVTEAKSLLQAVKI 220 (575)
Q Consensus 168 aY~~qGryeEAe~~yrkALeidPd---n~~-~~NLA~iy~~qGr~eEAi~lLekALe 220 (575)
+|..+|++++|+..+++++.-.|+ +.. .+.++.++..+|+.+||+..+-.++.
T Consensus 47 tlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 47 TLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999999999998 666 88899999999999999999988886
No 108
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.45 E-value=1.7e-05 Score=91.37 Aligned_cols=72 Identities=19% Similarity=0.134 Sum_probs=66.1
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCCh
Q 038048 158 KSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK--QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMDT 229 (575)
Q Consensus 158 ~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~--~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~~~ 229 (575)
....++.++.+|...|+|.+|+.+|-.++...+.+.. |+++|.||+.+|.+++|+.+|+++|.+.|++..+.
T Consensus 413 ~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~R 486 (895)
T KOG2076|consen 413 DVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDAR 486 (895)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhh
Confidence 4568999999999999999999999999999887775 99999999999999999999999999999987544
No 109
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=6.4e-06 Score=90.58 Aligned_cols=178 Identities=17% Similarity=0.176 Sum_probs=122.8
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCc-------HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHH--H------HHHHH
Q 038048 62 HIQLIDKDPSRAVSLFWAAINAGDRV-------DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIE--L------LQNKL 126 (575)
Q Consensus 62 ~l~l~~kd~eeAi~lf~kAL~l~p~~-------~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~--l------L~~~L 126 (575)
.+++-.+.+.+.+....++++.+-.. ..++..+|..|...++++.|+.++.+++.+... + .++.+
T Consensus 265 A~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~ 344 (539)
T KOG0548|consen 265 AVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKAL 344 (539)
T ss_pred HHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHH
Confidence 33444555555555555666554332 234555788999999999999998777664321 1 11111
Q ss_pred H----hhH---HHHHHHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 038048 127 K----NIE---EGIAFAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVD 191 (575)
Q Consensus 127 ~----l~~---~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPd 191 (575)
+ ..+ ....-....+..+...|+ ..+|..+|+++.+|.|.|.+|..+|.+..|+...+.+++++|+
T Consensus 345 k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~ 424 (539)
T KOG0548|consen 345 KEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN 424 (539)
T ss_pred HHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch
Confidence 1 110 000011111222222222 2468889999999999999999999999999999999999999
Q ss_pred CHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHH
Q 038048 192 MNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMDTSYSRSFERAIQML 242 (575)
Q Consensus 192 n~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~~~~~l~slerA~elL 242 (575)
+.. +..-|.++..+.+|++|...|+++++.+|++. .....+.++.++.
T Consensus 425 ~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~---e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 425 FIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNA---EAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhH---HHHHHHHHHHHHh
Confidence 999 99999999999999999999999999998754 3444555555544
No 110
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.43 E-value=7.2e-07 Score=72.23 Aligned_cols=62 Identities=27% Similarity=0.319 Sum_probs=58.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 165 LAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 165 LG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
|..+|...++|++|+.++++++.++|+++. +..+|.+|..+|++++|+..|+++++..|++.
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP 63 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence 467899999999999999999999999999 99999999999999999999999999999764
No 111
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=1e-06 Score=94.39 Aligned_cols=162 Identities=19% Similarity=0.175 Sum_probs=105.1
Q ss_pred HHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhc-----------------------CHHHHHHH
Q 038048 65 LIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSG-----------------------RIEEEIEL 121 (575)
Q Consensus 65 l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~g-----------------------aLeeAi~l 121 (575)
.-.++|.+|+..|..||.+.|++...|.+-|.+|+..|+|++|+...+. .+.++...
T Consensus 60 yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~ 139 (486)
T KOG0550|consen 60 YKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEK 139 (486)
T ss_pred HHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHH
Confidence 4456899999999999999999999999999999999999999866111 11111111
Q ss_pred HHHHH--------H----hhHHH----------------HHHHhHH-----------------HHHHHHhch--------
Q 038048 122 LQNKL--------K----NIEEG----------------IAFAGVK-----------------TKMARSQGK-------- 148 (575)
Q Consensus 122 L~~~L--------~----l~~~a----------------~a~~~nl-----------------a~al~sqg~-------- 148 (575)
++... . +++.. +.+.+.. ..++.-.|.
T Consensus 140 ~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~ 219 (486)
T KOG0550|consen 140 LKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNA 219 (486)
T ss_pred hhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccch
Confidence 11000 0 00000 0000000 000000000
Q ss_pred -------hhHHhhcCCcHH------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHH
Q 038048 149 -------KIQITVEQEKSR------------ILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-----QCNLAICLMH 204 (575)
Q Consensus 149 -------k~aL~L~Pd~~~------------a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-----~~NLA~iy~~ 204 (575)
...+.++|+... .+-.-|.-.++.|+|.+|..+|..||.|+|++.. ++|+|.++..
T Consensus 220 ~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~r 299 (486)
T KOG0550|consen 220 DKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIR 299 (486)
T ss_pred HHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcc
Confidence 223555555433 4456677788889999999999999999998774 6688999999
Q ss_pred cCCHHHHHHHHHHHHHHcCCCC
Q 038048 205 MNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 205 qGr~eEAi~lLekALel~P~n~ 226 (575)
+|+..||+.-++.++.+++...
T Consensus 300 Lgrl~eaisdc~~Al~iD~syi 321 (486)
T KOG0550|consen 300 LGRLREAISDCNEALKIDSSYI 321 (486)
T ss_pred cCCchhhhhhhhhhhhcCHHHH
Confidence 9999999999999999877543
No 112
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.42 E-value=5.9e-07 Score=73.94 Aligned_cols=74 Identities=28% Similarity=0.440 Sum_probs=56.3
Q ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHH
Q 038048 86 RVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNL 165 (575)
Q Consensus 86 ~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nL 165 (575)
....+++++|.+|..+|+|++|++++.++++. ...++.. .++...++++|
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~-----------------------------~~~~a~~~~~l 52 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDD-----------------------------HPDTANTLNNL 52 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTH-----------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCC-----------------------------CHHHHHHHHHH
Confidence 34568899999999999999999997665543 2222111 12224589999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhC
Q 038048 166 AWAYMQQNNFEMAEQYYRKALSLG 189 (575)
Q Consensus 166 G~aY~~qGryeEAe~~yrkALeid 189 (575)
|.+|..+|++++|+.+|++|+++.
T Consensus 53 g~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 53 GECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhh
Confidence 999999999999999999999873
No 113
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=4.7e-06 Score=89.26 Aligned_cols=114 Identities=18% Similarity=0.111 Sum_probs=87.5
Q ss_pred HHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHH
Q 038048 91 LKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYM 170 (575)
Q Consensus 91 l~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~ 170 (575)
...-|+.|++.|+|..|+..|..++ ..+...-...... .... ..--..+++||+.+|.
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav----~~l~~~~~~~~ee----~~~~--------------~~~k~~~~lNlA~c~l 268 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAV----SFLEYRRSFDEEE----QKKA--------------EALKLACHLNLAACYL 268 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHH----HHhhccccCCHHH----HHHH--------------HHHHHHHhhHHHHHHH
Confidence 3456999999999999998865532 2222111000000 0000 0011238899999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 171 QQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 171 ~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
++++|.+|+.+-.++|+++|+|.. ++.-|.+|+.+|+|+.|+..|++++++.|+|-
T Consensus 269 Kl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nk 325 (397)
T KOG0543|consen 269 KLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNK 325 (397)
T ss_pred hhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcH
Confidence 999999999999999999999999 99999999999999999999999999999885
No 114
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.39 E-value=2.8e-06 Score=88.98 Aligned_cols=148 Identities=17% Similarity=0.271 Sum_probs=107.5
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHH
Q 038048 64 QLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMA 143 (575)
Q Consensus 64 ~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al 143 (575)
++.-+.+.+|++.|+.+|+..|- ++.+..|+.+|....+...|+..+...++.-. .+..+.-..+..+
T Consensus 233 ylrLgm~r~AekqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP-----------~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 233 YLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFP-----------FDVTYLLGQARIH 300 (478)
T ss_pred HHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCC-----------chhhhhhhhHHHH
Confidence 34456677777777777776554 44556677777777777777776544443221 1111111111111
Q ss_pred HHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHH
Q 038048 144 RSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSL 214 (575)
Q Consensus 144 ~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~l 214 (575)
...++ +..+.++|.+.++.-.+|..|+--++.+-|+.+|++.|..--.+++ .+|+|.|.+..++++-++..
T Consensus 301 eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHH
Confidence 11111 3467788999999899999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHcC
Q 038048 215 LQAVKISAG 223 (575)
Q Consensus 215 LekALel~P 223 (575)
|++++..-.
T Consensus 381 f~RAlstat 389 (478)
T KOG1129|consen 381 FQRALSTAT 389 (478)
T ss_pred HHHHHhhcc
Confidence 999999754
No 115
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.37 E-value=4.6e-06 Score=85.81 Aligned_cols=105 Identities=9% Similarity=0.022 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHH
Q 038048 56 PYVRAKHIQLIDKDPSRAVSLFWAAINAGDRV---DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEG 132 (575)
Q Consensus 56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~---~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a 132 (575)
.|..+..+.+..+++++|+..|++.+...|+. +.+++.||.+|...|++++|+..+...+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--------------- 209 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--------------- 209 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------------
Confidence 34444444455789999999999999999987 479999999999999999999885442110
Q ss_pred HHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048 133 IAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK 194 (575)
Q Consensus 133 ~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~ 194 (575)
--.+|..+.+++.+|.+|..+|++++|+.+|+++++..|+...
T Consensus 210 -------------------yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 210 -------------------YPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred -------------------CCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 0113445679999999999999999999999999999999874
No 116
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.37 E-value=3.4e-05 Score=82.46 Aligned_cols=183 Identities=15% Similarity=0.125 Sum_probs=124.6
Q ss_pred chhhhhhHhhcCCCCCcHHHH---HHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHH-----
Q 038048 39 KKGDIFHVIHKVPSGDSPYVR---AKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEA----- 110 (575)
Q Consensus 39 ~Rae~y~~~~~~ps~d~~yar---A~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~----- 110 (575)
.+++.|-..-..+.++..+.. -..+++.++|+..|..-..+++...|.++.++.-...+|...|+|++...+
T Consensus 135 ~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ 214 (400)
T COG3071 135 DRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLR 214 (400)
T ss_pred HHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 455666654444444443332 224567889999999999999999999999999999999999999999988
Q ss_pred HhcCH--------HH-H-HHHHHHHH------------HhhHHH----HH-----------------HHhHHHHHHHHhc
Q 038048 111 RSGRI--------EE-E-IELLQNKL------------KNIEEG----IA-----------------FAGVKTKMARSQG 147 (575)
Q Consensus 111 ~~gaL--------ee-A-i~lL~~~L------------~l~~~a----~a-----------------~~~nla~al~sqg 147 (575)
..+.+ +. + ..+++... +..+.. .. ...-+.+++..+.
T Consensus 215 ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~ 294 (400)
T COG3071 215 KAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQW 294 (400)
T ss_pred HccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 11111 00 0 01111111 000000 00 0001111111111
Q ss_pred h----------------------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHc
Q 038048 148 K----------------------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQCNLAICLMHM 205 (575)
Q Consensus 148 ~----------------------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~~~NLA~iy~~q 205 (575)
+ ++.+...|+++.++..||.+|++.+.|.+|..+|+.|++..|+...+.-||.+|..+
T Consensus 295 D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~ 374 (400)
T COG3071 295 DPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQL 374 (400)
T ss_pred ChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHc
Confidence 1 223555788889999999999999999999999999999999988888999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 038048 206 NRVTEAKSLLQAVKIS 221 (575)
Q Consensus 206 Gr~eEAi~lLekALel 221 (575)
|+..+|.+++++++..
T Consensus 375 g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 375 GEPEEAEQVRREALLL 390 (400)
T ss_pred CChHHHHHHHHHHHHH
Confidence 9999999999998864
No 117
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.33 E-value=1.2e-05 Score=86.80 Aligned_cols=125 Identities=10% Similarity=0.037 Sum_probs=92.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHH
Q 038048 61 KHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKT 140 (575)
Q Consensus 61 ~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla 140 (575)
+.+.+..||++.|.+.+.++.+..|.....+...|.++.++|++++|..++..+.
T Consensus 91 glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~------------------------- 145 (409)
T TIGR00540 91 ALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAA------------------------- 145 (409)
T ss_pred HHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-------------------------
Confidence 4566889999999999999999888877677778999999999999999854422
Q ss_pred HHHHHhchhhHHhhcCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHH
Q 038048 141 KMARSQGKKIQITVEQEKS-RILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAV 218 (575)
Q Consensus 141 ~al~sqg~k~aL~L~Pd~~-~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekA 218 (575)
...|++. .+....+.++...|++++|...++++++..|+++. +.-++.+|..+|++++|+.++.++
T Consensus 146 ------------~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l 213 (409)
T TIGR00540 146 ------------ELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNM 213 (409)
T ss_pred ------------HhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 1233332 23444567777777777777777777777777777 667777777777777777777777
Q ss_pred HHHc
Q 038048 219 KISA 222 (575)
Q Consensus 219 Lel~ 222 (575)
++..
T Consensus 214 ~k~~ 217 (409)
T TIGR00540 214 AKAG 217 (409)
T ss_pred HHcC
Confidence 7653
No 118
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.32 E-value=4.2e-06 Score=86.13 Aligned_cols=137 Identities=26% Similarity=0.285 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC----CCc--HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhh
Q 038048 56 PYVRAKHIQLIDKDPSRAVSLFWAAINAG----DRV--DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNI 129 (575)
Q Consensus 56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l~----p~~--~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~ 129 (575)
.|.+|+..+...+++++|...|.++..+. ... ..++...|.+|.+. ++++|+.++..+++
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~------------- 102 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIE------------- 102 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHH-------------
Confidence 46677778888889999999888886542 111 23456666666555 88888877544322
Q ss_pred HHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCC--CCH---H--HHHHHHH
Q 038048 130 EEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQ-NNFEMAEQYYRKALSLGV--DMN---K--QCNLAIC 201 (575)
Q Consensus 130 ~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~q-GryeEAe~~yrkALeidP--dn~---~--~~NLA~i 201 (575)
.+...|+. ..-..++.++|.+|... |++++|+.+|++|+++.- +.. . ..++|.+
T Consensus 103 ------------~y~~~G~~------~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 103 ------------IYREAGRF------SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL 164 (282)
T ss_dssp ------------HHHHCT-H------HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ------------HHHhcCcH------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence 11222210 00134889999999999 999999999999999842 222 1 5689999
Q ss_pred HHHcCCHHHHHHHHHHHHHHcCC
Q 038048 202 LMHMNRVTEAKSLLQAVKISAGN 224 (575)
Q Consensus 202 y~~qGr~eEAi~lLekALel~P~ 224 (575)
+..+|+|++|+.+|+++....-+
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~ 187 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLE 187 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCC
T ss_pred HHHhCCHHHHHHHHHHHHHHhhc
Confidence 99999999999999999986543
No 119
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.28 E-value=3.1e-06 Score=89.12 Aligned_cols=104 Identities=11% Similarity=0.087 Sum_probs=94.2
Q ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHH
Q 038048 86 RVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNL 165 (575)
Q Consensus 86 ~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nL 165 (575)
....-++.||..++..|++.+|+..|.. ++..+|++..+++..
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHa-------------------------------------Ave~dp~~Y~aifrR 78 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHA-------------------------------------AVEGDPNNYQAIFRR 78 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHH-------------------------------------HHcCCchhHHHHHHH
Confidence 3345577899999999999999988544 367799999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 166 AWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 166 G~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
|.+|+.+|+-.-|+.-+.++|++.||+.. ....|.+++++|++++|+.-|+++|..+|.+-
T Consensus 79 aT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~ 140 (504)
T KOG0624|consen 79 ATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNG 140 (504)
T ss_pred HHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcc
Confidence 99999999999999999999999999999 99999999999999999999999999998653
No 120
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.26 E-value=1.7e-05 Score=77.96 Aligned_cols=137 Identities=16% Similarity=0.054 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHH
Q 038048 56 PYVRAKHIQLIDKDPSRAVSLFWAAINAGDRV---DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEG 132 (575)
Q Consensus 56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~---~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a 132 (575)
.+...+...+..|++++|+..|++.+...|.. ..+.+.+|.++...|++++|+..+..-+. ..+
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~-----------~yP-- 73 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK-----------LYP-- 73 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH-----------H-T--
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------HCC--
Confidence 45566677899999999999999999987764 57899999999999999999987433111 000
Q ss_pred HHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHH-----------cCCHHHHHHHHHHHHHhCCCCHH-H-----
Q 038048 133 IAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQ-----------QNNFEMAEQYYRKALSLGVDMNK-Q----- 195 (575)
Q Consensus 133 ~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~-----------qGryeEAe~~yrkALeidPdn~~-~----- 195 (575)
-.|.-+.+++.+|.++.. ++...+|+..|+..+...|+..- .
T Consensus 74 ---------------------~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~ 132 (203)
T PF13525_consen 74 ---------------------NSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKR 132 (203)
T ss_dssp ---------------------T-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHH
T ss_pred ---------------------CCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHH
Confidence 022233466777766544 45567999999999999998873 1
Q ss_pred ------------HHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 196 ------------CNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 196 ------------~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
+.+|..|.+.|.+..|+..++.+++..|+..
T Consensus 133 l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~ 175 (203)
T PF13525_consen 133 LAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTP 175 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCc
Confidence 2569999999999999999999999999754
No 121
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=1e-05 Score=86.80 Aligned_cols=125 Identities=14% Similarity=0.150 Sum_probs=103.1
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCC---------------cHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHH
Q 038048 63 IQLIDKDPSRAVSLFWAAINAGDR---------------VDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLK 127 (575)
Q Consensus 63 l~l~~kd~eeAi~lf~kAL~l~p~---------------~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~ 127 (575)
.++-.+++..|...|++|+..=.. -..++.|||.+|+++++|.+|+..-.
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~--------------- 281 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCN--------------- 281 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHH---------------
Confidence 456678899999999998763221 02468899999999999999998732
Q ss_pred hhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcC
Q 038048 128 NIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMN 206 (575)
Q Consensus 128 l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qG 206 (575)
+.+.++|.+.-++|..|.+|..+|+|+.|+..|++|++++|+|.. ...|..+-.+..
T Consensus 282 ----------------------kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~ 339 (397)
T KOG0543|consen 282 ----------------------KVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIR 339 (397)
T ss_pred ----------------------HHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 246789999999999999999999999999999999999999988 888888877777
Q ss_pred CHHHH-HHHHHHHHHHcCC
Q 038048 207 RVTEA-KSLLQAVKISAGN 224 (575)
Q Consensus 207 r~eEA-i~lLekALel~P~ 224 (575)
++.+. .++|.+++.....
T Consensus 340 ~~~~kekk~y~~mF~k~~~ 358 (397)
T KOG0543|consen 340 EYEEKEKKMYANMFAKLAE 358 (397)
T ss_pred HHHHHHHHHHHHHhhcccc
Confidence 76665 7888888886543
No 122
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.25 E-value=5.6e-06 Score=93.61 Aligned_cols=123 Identities=15% Similarity=0.123 Sum_probs=90.1
Q ss_pred cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHh
Q 038048 67 DKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQ 146 (575)
Q Consensus 67 ~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sq 146 (575)
+++++++...|+..++++|-....|+++|.++++.++++.|..+|..
T Consensus 498 ~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~r--------------------------------- 544 (777)
T KOG1128|consen 498 NKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHR--------------------------------- 544 (777)
T ss_pred chhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHH---------------------------------
Confidence 46677777777777777777667777777777777777777666422
Q ss_pred chhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048 147 GKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNR 225 (575)
Q Consensus 147 g~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n 225 (575)
.+.++|++..+|+||+.+|...|+-.+|-..+.+|++-+-++.. +-|.-.+..+.|.+++|+..|.+.+.+....
T Consensus 545 ----cvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~ 620 (777)
T KOG1128|consen 545 ----CVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKY 620 (777)
T ss_pred ----HhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhc
Confidence 35667888888888888888888888888888888888766666 7777778888888888888888877765543
Q ss_pred C
Q 038048 226 Q 226 (575)
Q Consensus 226 ~ 226 (575)
.
T Consensus 621 ~ 621 (777)
T KOG1128|consen 621 K 621 (777)
T ss_pred c
Confidence 3
No 123
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.24 E-value=6.4e-05 Score=76.32 Aligned_cols=132 Identities=11% Similarity=-0.050 Sum_probs=103.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCcHH---HHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHH
Q 038048 59 RAKHIQLIDKDPSRAVSLFWAAINAGDRVDS---ALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAF 135 (575)
Q Consensus 59 rA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~---Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~ 135 (575)
..+...+..|++++|+..|++++...|.... +.+.||.+|.+++++++|+..+...
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~f--------------------- 95 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRF--------------------- 95 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH---------------------
Confidence 3445557789999999999999999998764 4589999999999999999985432
Q ss_pred HhHHHHHHHHhchhhHHhhcC---CcHHHHHHHHHHHHHcC------------------CHHHHHHHHHHHHHhCCCCHH
Q 038048 136 AGVKTKMARSQGKKIQITVEQ---EKSRILGNLAWAYMQQN------------------NFEMAEQYYRKALSLGVDMNK 194 (575)
Q Consensus 136 ~~nla~al~sqg~k~aL~L~P---d~~~a~~nLG~aY~~qG------------------ryeEAe~~yrkALeidPdn~~ 194 (575)
+.+.| +.+.+++.+|.++..++ ...+|+..|++.++..|+..-
T Consensus 96 ----------------i~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~y 159 (243)
T PRK10866 96 ----------------IRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQY 159 (243)
T ss_pred ----------------HHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChh
Confidence 23333 33458888887765544 236788999999999998763
Q ss_pred -H-----------------HHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCC
Q 038048 195 -Q-----------------CNLAICLMHMNRVTEAKSLLQAVKISAGNRQM 227 (575)
Q Consensus 195 -~-----------------~NLA~iy~~qGr~eEAi~lLekALel~P~n~~ 227 (575)
. +..|..|.+.|+|..|+.-++.+++..|+...
T Consensus 160 a~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~ 210 (243)
T PRK10866 160 TTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQA 210 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCch
Confidence 1 15588899999999999999999999987653
No 124
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.21 E-value=2.4e-05 Score=84.88 Aligned_cols=113 Identities=18% Similarity=0.185 Sum_probs=97.7
Q ss_pred HHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHH
Q 038048 65 LIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMAR 144 (575)
Q Consensus 65 l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~ 144 (575)
...+.++.|+.+|++..+.+|. +...||.+|...++-.+|+.+...
T Consensus 180 ~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~------------------------------- 225 (395)
T PF09295_consen 180 SLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNE------------------------------- 225 (395)
T ss_pred hhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHH-------------------------------
Confidence 4457899999999999888876 455689999999998888877322
Q ss_pred HhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHH
Q 038048 145 SQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQA 217 (575)
Q Consensus 145 sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLek 217 (575)
++...|.+..++...+..++..++++.|+.+.++|+.+.|+... |+.||.+|..+|++++|+..++.
T Consensus 226 ------aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 226 ------ALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred ------HHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 23447888889999999999999999999999999999999999 99999999999999999987763
No 125
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.18 E-value=9.2e-06 Score=88.65 Aligned_cols=70 Identities=13% Similarity=0.073 Sum_probs=62.9
Q ss_pred cCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHH--
Q 038048 83 AGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSR-- 160 (575)
Q Consensus 83 l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~-- 160 (575)
.+|+.+.+++|+|.+|..+|+|++|+.++.. ++.++|++..
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~r-------------------------------------ALeL~Pd~aeA~ 112 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFET-------------------------------------ALELNPNPDEAQ 112 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-------------------------------------HHhhCCCchHHH
Confidence 4788899999999999999999999998544 3567999885
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 038048 161 -ILGNLAWAYMQQNNFEMAEQYYRKALSLG 189 (575)
Q Consensus 161 -a~~nLG~aY~~qGryeEAe~~yrkALeid 189 (575)
+|+|+|.+|..+|++++|+.+|++|+++.
T Consensus 113 ~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 113 AAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 59999999999999999999999999983
No 126
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.17 E-value=0.00011 Score=83.86 Aligned_cols=177 Identities=18% Similarity=0.121 Sum_probs=122.3
Q ss_pred CCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHH-------------
Q 038048 51 PSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAG-DRVDSALKDMAVVMKQLDRSDEAIEARSGRIE------------- 116 (575)
Q Consensus 51 ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~-p~~~~Al~nLA~iy~qqGrydEAie~~~gaLe------------- 116 (575)
++..-..+.+...+....+.+.|..+.+.+++++ ..+..+|..||.++..++++.+|+.+-..+++
T Consensus 475 ~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~ 554 (799)
T KOG4162|consen 475 PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKI 554 (799)
T ss_pred CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhh
Confidence 3333444556667778889999999999999994 55677999999999999999999998322222
Q ss_pred ----------HHHHHHHHHHHhhH----------HHH-------------------HHHhHHHHHHHHhch---------
Q 038048 117 ----------EEIELLQNKLKNIE----------EGI-------------------AFAGVKTKMARSQGK--------- 148 (575)
Q Consensus 117 ----------eAi~lL~~~L~l~~----------~a~-------------------a~~~nla~al~sqg~--------- 148 (575)
++..++...+.+.. ++. .....+......++.
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp 634 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLP 634 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccC
Confidence 22222222221111 000 001111111111111
Q ss_pred ---------------------------------------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 038048 149 ---------------------------------------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLG 189 (575)
Q Consensus 149 ---------------------------------------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeid 189 (575)
..+-.+.|..+..|+..|.++..+|++.||.+.|..|+.++
T Consensus 635 ~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld 714 (799)
T KOG4162|consen 635 SSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD 714 (799)
T ss_pred cccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence 00122245555677888999999999999999999999999
Q ss_pred CCCHH-HHHHHHHHHHcCCHHHHHH--HHHHHHHHcCCCCC
Q 038048 190 VDMNK-QCNLAICLMHMNRVTEAKS--LLQAVKISAGNRQM 227 (575)
Q Consensus 190 Pdn~~-~~NLA~iy~~qGr~eEAi~--lLekALel~P~n~~ 227 (575)
|++.. +..||.+|.+.|+..-|.. ++..+++++|.+..
T Consensus 715 P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~e 755 (799)
T KOG4162|consen 715 PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHE 755 (799)
T ss_pred CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHH
Confidence 99999 9999999999999888888 99999999998763
No 127
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.17 E-value=2.3e-05 Score=72.55 Aligned_cols=89 Identities=21% Similarity=0.158 Sum_probs=70.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHH
Q 038048 60 AKHIQLIDKDPSRAVSLFWAAINAGDRV---DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFA 136 (575)
Q Consensus 60 A~~l~l~~kd~eeAi~lf~kAL~l~p~~---~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~ 136 (575)
....++..|++++|+..|+.++...++. ..+...||.++..+|++++|+..+...
T Consensus 54 lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~---------------------- 111 (145)
T PF09976_consen 54 LAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI---------------------- 111 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc----------------------
Confidence 3345577899999999999999977554 347889999999999999999984221
Q ss_pred hHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038048 137 GVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKAL 186 (575)
Q Consensus 137 ~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkAL 186 (575)
.-.+-.+.++..+|.+|..+|++++|+..|++||
T Consensus 112 ----------------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 112 ----------------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred ----------------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 0112223477789999999999999999999985
No 128
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.12 E-value=3.7e-05 Score=83.29 Aligned_cols=156 Identities=15% Similarity=-0.046 Sum_probs=86.2
Q ss_pred CChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhc
Q 038048 68 KDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQG 147 (575)
Q Consensus 68 kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg 147 (575)
+++..|..|-..|+..+-.++.++.|.|++....|++++|.+.|..++.......+.....- .-....+++..++.-..
T Consensus 470 k~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfnig-lt~e~~~~ldeald~f~ 548 (840)
T KOG2003|consen 470 KDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIG-LTAEALGNLDEALDCFL 548 (840)
T ss_pred cchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhc-ccHHHhcCHHHHHHHHH
Confidence 36666777777777777777777777777777778888777775544432111111110000 00001111111111111
Q ss_pred hhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 148 KKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 148 ~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
+-..+. -++..+++.++.+|..+.+..+|+++|-++..+-|+++. +..||.+|-..|+-.+|.+++-......|.+.
T Consensus 549 klh~il--~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~ni 626 (840)
T KOG2003|consen 549 KLHAIL--LNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNI 626 (840)
T ss_pred HHHHHH--HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcch
Confidence 101111 234456666677777777777777777777777777766 66677777777777777666666666566554
No 129
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.12 E-value=1.4e-05 Score=92.74 Aligned_cols=162 Identities=14% Similarity=0.025 Sum_probs=89.4
Q ss_pred CCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHH
Q 038048 52 SGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEE 131 (575)
Q Consensus 52 s~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~ 131 (575)
+.-..|.-.++++..--|...|...|++|.++++....+...++..|.....+++|.++....-+.+..-.....
T Consensus 490 ~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~n----- 564 (1238)
T KOG1127|consen 490 SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKEN----- 564 (1238)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhh-----
Confidence 333344444444433335555555666666655555555555555566666665555553222222111110000
Q ss_pred HHHHHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHH
Q 038048 132 GIAFAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICL 202 (575)
Q Consensus 132 a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy 202 (575)
+...+-.+.+.++ +.++.++|.+.+.|..||.+|..-|+|.-|+..|.+|..++|+.-- .+-.|.+.
T Consensus 565 ----W~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~e 640 (1238)
T KOG1127|consen 565 ----WVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVME 640 (1238)
T ss_pred ----hhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHH
Confidence 0000000000000 2346667777777777777777777777777777777777777776 77777777
Q ss_pred HHcCCHHHHHHHHHHHHHHc
Q 038048 203 MHMNRVTEAKSLLQAVKISA 222 (575)
Q Consensus 203 ~~qGr~eEAi~lLekALel~ 222 (575)
...|+|.+|+..+..++...
T Consensus 641 cd~GkYkeald~l~~ii~~~ 660 (1238)
T KOG1127|consen 641 CDNGKYKEALDALGLIIYAF 660 (1238)
T ss_pred HHhhhHHHHHHHHHHHHHHH
Confidence 77777777777777776654
No 130
>PRK15331 chaperone protein SicA; Provisional
Probab=98.09 E-value=3.4e-05 Score=74.18 Aligned_cols=105 Identities=10% Similarity=-0.065 Sum_probs=87.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHH
Q 038048 61 KHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKT 140 (575)
Q Consensus 61 ~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla 140 (575)
+......|++++|+.+|+-....++.+...+.+||.++..+++|++|+..|.-
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~--------------------------- 96 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAV--------------------------- 96 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------
Confidence 34457789999999999999899999999999999999999999999998533
Q ss_pred HHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 038048 141 KMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQCNLAICLM 203 (575)
Q Consensus 141 ~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~~~NLA~iy~ 203 (575)
+..++++++...+..|.+|+.+|+.++|..+|.-|+. .|.+......|..|+
T Consensus 97 ----------A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L 148 (165)
T PRK15331 97 ----------AFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAKALVYL 148 (165)
T ss_pred ----------HHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHHH
Confidence 2345678888899999999999999999999999998 566555444454444
No 131
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.06 E-value=8e-05 Score=85.66 Aligned_cols=170 Identities=10% Similarity=0.001 Sum_probs=90.0
Q ss_pred CcHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHH--------------------Hh
Q 038048 54 DSPYVRAKHIQLIDKDPSRAVSLFWAAINAG-DRVDSALKDMAVVMKQLDRSDEAIEA--------------------RS 112 (575)
Q Consensus 54 d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~-p~~~~Al~nLA~iy~qqGrydEAie~--------------------~~ 112 (575)
...|.-........+++++|..++..+++.+ +.+..+++.|...|.+.|++++|+.+ ..
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~ 404 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNH 404 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHc
Confidence 3444444444555667777777777776655 22334566667777777777777766 23
Q ss_pred cCHHHHHHHHHHHHH--hhHHHHHHHhHHHHHHHHhch-----h---hHH---hhcCCcHHHHHHHHHHHHHcCCHHHHH
Q 038048 113 GRIEEEIELLQNKLK--NIEEGIAFAGVKTKMARSQGK-----K---IQI---TVEQEKSRILGNLAWAYMQQNNFEMAE 179 (575)
Q Consensus 113 gaLeeAi~lL~~~L~--l~~~a~a~~~nla~al~sqg~-----k---~aL---~L~Pd~~~a~~nLG~aY~~qGryeEAe 179 (575)
+..++|+.++..... ..++ ..++..+..++...|. + ... .+.|+ ...|..+..+|.+.|++++|+
T Consensus 405 G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~-~~~y~~li~~l~r~G~~~eA~ 482 (697)
T PLN03081 405 GRGTKAVEMFERMIAEGVAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR-AMHYACMIELLGREGLLDEAY 482 (697)
T ss_pred CCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC-ccchHhHHHHHHhcCCHHHHH
Confidence 344455555554432 1111 1222223333333332 0 001 11122 225566666677777777776
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 180 QYYRKALSLGVDMNKQCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 180 ~~yrkALeidPdn~~~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
+.++++ .+.|+...+..|..++...|+++.|+..+++++++.|++.
T Consensus 483 ~~~~~~-~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~ 528 (697)
T PLN03081 483 AMIRRA-PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKL 528 (697)
T ss_pred HHHHHC-CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCC
Confidence 666553 2344433366666666666777777766666666666543
No 132
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.04 E-value=4e-05 Score=86.91 Aligned_cols=153 Identities=11% Similarity=0.033 Sum_probs=108.5
Q ss_pred HHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHH
Q 038048 65 LIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMAR 144 (575)
Q Consensus 65 l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~ 144 (575)
..-|+..+|..+.++-++ .|..+..|..||.+..+.-=|++|.++....-..|...++..+.. ..+...+..
T Consensus 435 ~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~-------~~~fs~~~~ 506 (777)
T KOG1128|consen 435 LLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILS-------NKDFSEADK 506 (777)
T ss_pred HHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhcccccc-------chhHHHHHH
Confidence 334566666666666666 444556666677777766667777766433322222221111100 011111111
Q ss_pred HhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Q 038048 145 SQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAG 223 (575)
Q Consensus 145 sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P 223 (575)
.. +..+.++|-....|+++|.++.+.++++.|..+|.+.+.++|++.. ++||+.+|+..|+-.+|...+.++++-+-
T Consensus 507 hl--e~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~ 584 (777)
T KOG1128|consen 507 HL--ERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY 584 (777)
T ss_pred HH--HHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 11 2457889999999999999999999999999999999999999999 99999999999999999999999999886
Q ss_pred CCCC
Q 038048 224 NRQM 227 (575)
Q Consensus 224 ~n~~ 227 (575)
++|.
T Consensus 585 ~~w~ 588 (777)
T KOG1128|consen 585 QHWQ 588 (777)
T ss_pred CCCe
Confidence 6654
No 133
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.04 E-value=7.8e-05 Score=76.79 Aligned_cols=146 Identities=19% Similarity=0.251 Sum_probs=94.0
Q ss_pred cCChHHHHHHHHHHHHc---CCC---cHHHHHHHHHHHHHC-CCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHH
Q 038048 67 DKDPSRAVSLFWAAINA---GDR---VDSALKDMAVVMKQL-DRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVK 139 (575)
Q Consensus 67 ~kd~eeAi~lf~kAL~l---~p~---~~~Al~nLA~iy~qq-GrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nl 139 (575)
..++++|+.+|++|+.+ ... ...++..+|.+|... |++++|+++|..+++. +
T Consensus 87 ~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~----y----------------- 145 (282)
T PF14938_consen 87 KGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAEL----Y----------------- 145 (282)
T ss_dssp HTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHH----H-----------------
T ss_pred hhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----H-----------------
Confidence 34778888888888764 111 134677888888887 8888888876554332 1
Q ss_pred HHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HH--HHHHHHHHHHcCCHHHH
Q 038048 140 TKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDM------NK--QCNLAICLMHMNRVTEA 211 (575)
Q Consensus 140 a~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn------~~--~~NLA~iy~~qGr~eEA 211 (575)
...+. .-.-...+.++|.++..+|+|++|+.+|+++....-++ .. ++..++|++..|++..|
T Consensus 146 ----~~e~~------~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A 215 (282)
T PF14938_consen 146 ----EQEGS------PHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAA 215 (282)
T ss_dssp ----HHTT-------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred ----HHCCC------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHH
Confidence 11110 00012377899999999999999999999998864321 12 45788899999999999
Q ss_pred HHHHHHHHHHcCCCCCChhHHHHHHHHHHHHHHhcc
Q 038048 212 KSLLQAVKISAGNRQMDTSYSRSFERAIQMLTELES 247 (575)
Q Consensus 212 i~lLekALel~P~n~~~~~~l~slerA~elL~ele~ 247 (575)
...|++....+|.-... ....-+..++..++.
T Consensus 216 ~~~~~~~~~~~~~F~~s----~E~~~~~~l~~A~~~ 247 (282)
T PF14938_consen 216 RKALERYCSQDPSFASS----REYKFLEDLLEAYEE 247 (282)
T ss_dssp HHHHHHHGTTSTTSTTS----HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhCCCCCCc----HHHHHHHHHHHHHHh
Confidence 99999999988754322 223334445544443
No 134
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.03 E-value=1.8e-05 Score=63.92 Aligned_cols=64 Identities=19% Similarity=0.241 Sum_probs=57.4
Q ss_pred HHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcC
Q 038048 94 MAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQN 173 (575)
Q Consensus 94 LA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qG 173 (575)
|..+|.+.++|++|+++... .+.++|++..++..+|.+|..+|
T Consensus 1 l~~~~~~~~~~~~A~~~~~~-------------------------------------~l~~~p~~~~~~~~~a~~~~~~g 43 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLER-------------------------------------ALELDPDDPELWLQRARCLFQLG 43 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHH-------------------------------------HHHhCcccchhhHHHHHHHHHhc
Confidence 46789999999999987322 36679999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHH
Q 038048 174 NFEMAEQYYRKALSLGVDMNK 194 (575)
Q Consensus 174 ryeEAe~~yrkALeidPdn~~ 194 (575)
++++|+..|++++++.|++..
T Consensus 44 ~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 44 RYEEALEDLERALELSPDDPD 64 (73)
T ss_pred cHHHHHHHHHHHHHHCCCcHH
Confidence 999999999999999999987
No 135
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.03 E-value=0.00012 Score=76.27 Aligned_cols=156 Identities=19% Similarity=0.197 Sum_probs=101.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCH--H-HH-H-HHHHHHHHhhHHHHH
Q 038048 60 AKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRI--E-EE-I-ELLQNKLKNIEEGIA 134 (575)
Q Consensus 60 A~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaL--e-eA-i-~lL~~~L~l~~~a~a 134 (575)
++.++...+++++|+.++.+. ...++..-+..+|+.++|++.|.+.+...- . .+ + .+....+.+. .+..
T Consensus 108 ~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~-~g~e 181 (290)
T PF04733_consen 108 AATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLA-TGGE 181 (290)
T ss_dssp HHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHH-HTTT
T ss_pred HHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH-hCch
Confidence 445666689999998877543 456777778899999999999998742211 0 00 0 1111111100 0000
Q ss_pred HHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCH-HHHH
Q 038048 135 FAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRV-TEAK 212 (575)
Q Consensus 135 ~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~-eEAi 212 (575)
.+......+.+ ....-+..+.+++.++.+++.+|+|++|+..+.+|+..+|+++. ..|++.+...+|+. +.+.
T Consensus 182 ~~~~A~y~f~E-----l~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~ 256 (290)
T PF04733_consen 182 KYQDAFYIFEE-----LSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAE 256 (290)
T ss_dssp CCCHHHHHHHH-----HHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred hHHHHHHHHHH-----HHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHH
Confidence 00111111111 11222455678899999999999999999999999999999999 99999999999999 6788
Q ss_pred HHHHHHHHHcCCCC
Q 038048 213 SLLQAVKISAGNRQ 226 (575)
Q Consensus 213 ~lLekALel~P~n~ 226 (575)
+++.++...+|+++
T Consensus 257 ~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 257 RYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHCHHHTTTSH
T ss_pred HHHHHHHHhCCCCh
Confidence 89999988888754
No 136
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.02 E-value=5.1e-05 Score=73.95 Aligned_cols=95 Identities=20% Similarity=0.185 Sum_probs=64.8
Q ss_pred hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHH---HHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHh
Q 038048 70 PSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDE---AIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQ 146 (575)
Q Consensus 70 ~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydE---Aie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sq 146 (575)
++.|.+.++.+...+|.+.+++++=|.+|+.+.++.. +.++ +++++.-++
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~m----iedAisK~e----------------------- 59 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKM----IEDAISKFE----------------------- 59 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHH----HHHHHHHHH-----------------------
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHH----HHHHHHHHH-----------------------
Confidence 4678888888899999999999999999999877644 5444 222332222
Q ss_pred chhhHHhhcCCcHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCCCCHH
Q 038048 147 GKKIQITVEQEKSRILGNLAWAYMQQNN-----------FEMAEQYYRKALSLGVDMNK 194 (575)
Q Consensus 147 g~k~aL~L~Pd~~~a~~nLG~aY~~qGr-----------yeEAe~~yrkALeidPdn~~ 194 (575)
.++.++|+...++++||.+|..++. |++|..+|++|+..+|+|..
T Consensus 60 ---eAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~ 115 (186)
T PF06552_consen 60 ---EALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNEL 115 (186)
T ss_dssp ---HHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred ---HHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 3467899999999999999988865 56666666666666666654
No 137
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.01 E-value=0.00025 Score=79.96 Aligned_cols=182 Identities=10% Similarity=0.119 Sum_probs=130.5
Q ss_pred hhHhhcCCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhc----------
Q 038048 44 FHVIHKVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSG---------- 113 (575)
Q Consensus 44 y~~~~~~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~g---------- 113 (575)
|..........--|++..++..+.++.++|+.+++.+|+.-|.....|..+|.++.++++.+.|.+.|..
T Consensus 641 lakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ip 720 (913)
T KOG0495|consen 641 LAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIP 720 (913)
T ss_pred HHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCch
Confidence 3334443344556777778888899999999999999999999999999999999999999999988322
Q ss_pred -------------CHHHHHHHHHHHHHhhHHHHHHH-----------------hHHHHHHHHh---ch------------
Q 038048 114 -------------RIEEEIELLQNKLKNIEEGIAFA-----------------GVKTKMARSQ---GK------------ 148 (575)
Q Consensus 114 -------------aLeeAi~lL~~~L~l~~~a~a~~-----------------~nla~al~sq---g~------------ 148 (575)
.+..|..+|.......+.+..++ ...++++.+- |.
T Consensus 721 LWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~ 800 (913)
T KOG0495|consen 721 LWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRP 800 (913)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCc
Confidence 22233344444331111111111 0111111110 00
Q ss_pred -h-----hHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038048 149 -K-----IQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKIS 221 (575)
Q Consensus 149 -k-----~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel 221 (575)
+ -++..-.+++.++..+|.++....++++|...|.+|+.++||+.+ +..+-..+...|.-++-...|.+....
T Consensus 801 ~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 801 QRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred ccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 0 123445677778899999999999999999999999999999999 999999999999999999999998888
Q ss_pred cCCC
Q 038048 222 AGNR 225 (575)
Q Consensus 222 ~P~n 225 (575)
.|.+
T Consensus 881 EP~h 884 (913)
T KOG0495|consen 881 EPTH 884 (913)
T ss_pred CCCC
Confidence 8865
No 138
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=0.00017 Score=80.40 Aligned_cols=69 Identities=19% Similarity=0.180 Sum_probs=57.8
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCC---H-----H-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038048 158 KSRILGNLAWAYMQQNNFEMAEQYYRKALSLG-------VDM---N-----K-QCNLAICLMHMNRVTEAKSLLQAVKIS 221 (575)
Q Consensus 158 ~~~a~~nLG~aY~~qGryeEAe~~yrkALeid-------Pdn---~-----~-~~NLA~iy~~qGr~eEAi~lLekALel 221 (575)
..+.+||.+.++...|+|.+|++.+++|+.+- -.+ . . ..-|+.+|..+|+.+||..+|..++..
T Consensus 174 syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~ 253 (652)
T KOG2376|consen 174 SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR 253 (652)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence 45699999999999999999999999996552 112 1 1 347899999999999999999999999
Q ss_pred cCCCC
Q 038048 222 AGNRQ 226 (575)
Q Consensus 222 ~P~n~ 226 (575)
++.|.
T Consensus 254 ~~~D~ 258 (652)
T KOG2376|consen 254 NPADE 258 (652)
T ss_pred cCCCc
Confidence 88764
No 139
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.00 E-value=0.0002 Score=82.34 Aligned_cols=52 Identities=15% Similarity=0.005 Sum_probs=39.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Q 038048 57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEAR 111 (575)
Q Consensus 57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~ 111 (575)
|.-....+...|++++|..+|... .+.+..+|+.|...|.+.|++++|+.++
T Consensus 262 ~n~Li~~y~k~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~lf 313 (697)
T PLN03081 262 SCALIDMYSKCGDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALCLY 313 (697)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHHHH
Confidence 333445566678899999999765 3345668889999999999999999884
No 140
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.99 E-value=0.00018 Score=80.66 Aligned_cols=65 Identities=22% Similarity=0.155 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048 161 ILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNR 225 (575)
Q Consensus 161 a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n 225 (575)
+++.|+..|...|++++|+.+..+||+..|..++ ++..|.+|.+.|++.+|...++.+..++..|
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~D 261 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLAD 261 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhh
Confidence 6689999999999999999999999999999999 9999999999999999999999999998864
No 141
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.97 E-value=0.00016 Score=85.17 Aligned_cols=154 Identities=12% Similarity=0.050 Sum_probs=106.6
Q ss_pred hhhhHhhcCCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHH--
Q 038048 42 DIFHVIHKVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEI-- 119 (575)
Q Consensus 42 e~y~~~~~~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi-- 119 (575)
..+......+...+.+...+..+-..|+.++|...|+++|+.+|.++.+++++|..|... ++++|++++.+++...+
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~ 182 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKK 182 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhh
Confidence 334455555555566666667777789999999999999999999999999999999999 99999999777665432
Q ss_pred -------HHHHHHHHhhHHHHHHHhHHHHHHH-HhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 038048 120 -------ELLQNKLKNIEEGIAFAGVKTKMAR-SQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVD 191 (575)
Q Consensus 120 -------~lL~~~L~l~~~a~a~~~nla~al~-sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPd 191 (575)
.+....+...+....++..+..... +.+ .-.-...+.-|=..|...++|++++.+++.+|+++|.
T Consensus 183 kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~-------~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~ 255 (906)
T PRK14720 183 KQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHRE-------FTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK 255 (906)
T ss_pred hcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhc-------cchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc
Confidence 1111111111111111111111111 101 1112235555668899999999999999999999999
Q ss_pred CHH-HHHHHHHHH
Q 038048 192 MNK-QCNLAICLM 203 (575)
Q Consensus 192 n~~-~~NLA~iy~ 203 (575)
|.. ...|+.+|.
T Consensus 256 n~~a~~~l~~~y~ 268 (906)
T PRK14720 256 NNKAREELIRFYK 268 (906)
T ss_pred chhhHHHHHHHHH
Confidence 998 999999985
No 142
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.97 E-value=0.00015 Score=71.21 Aligned_cols=123 Identities=18% Similarity=0.146 Sum_probs=85.8
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHH
Q 038048 87 VDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLA 166 (575)
Q Consensus 87 ~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG 166 (575)
.+..++..|..+++.|+|++|+..+...... . --.+.-..+.+.+|
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~-----------~-----------------------P~s~~a~~A~l~la 49 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDR-----------Y-----------------------PNSPYAPQAQLMLA 49 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-----------------------------------TTSTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----------C-----------------------CCChHHHHHHHHHH
Confidence 3567899999999999999999984332110 0 01233456899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHc-----------CCHHHHHHHHHHHHHHcCCCCCChhH
Q 038048 167 WAYMQQNNFEMAEQYYRKALSLGVDMNK----QCNLAICLMHM-----------NRVTEAKSLLQAVKISAGNRQMDTSY 231 (575)
Q Consensus 167 ~aY~~qGryeEAe~~yrkALeidPdn~~----~~NLA~iy~~q-----------Gr~eEAi~lLekALel~P~n~~~~~~ 231 (575)
.+|...|+|++|+..|++.+...|+++. ++.+|.++..+ +...+|+..|+.++...|+......+
T Consensus 50 ~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A 129 (203)
T PF13525_consen 50 YAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEA 129 (203)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHH
Confidence 9999999999999999999999999774 67788886544 45569999999999999987643333
Q ss_pred HHHHHHHHHHHH
Q 038048 232 SRSFERAIQMLT 243 (575)
Q Consensus 232 l~slerA~elL~ 243 (575)
...+..+...+.
T Consensus 130 ~~~l~~l~~~la 141 (203)
T PF13525_consen 130 KKRLAELRNRLA 141 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333444444443
No 143
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.96 E-value=0.00017 Score=73.28 Aligned_cols=120 Identities=13% Similarity=0.047 Sum_probs=88.9
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcH---HHHH
Q 038048 87 VDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKS---RILG 163 (575)
Q Consensus 87 ~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~---~a~~ 163 (575)
.+..++..|..+.+.|+|++|++.+... +...|... .+.+
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l-------------------------------------~~~yP~s~~a~~a~l 73 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEAL-------------------------------------DNRYPFGPYSQQVQL 73 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHH-------------------------------------HHhCCCChHHHHHHH
Confidence 4567888999999999999999984332 22234333 3669
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHcC------------------CHHHHHHHHHHHHHH
Q 038048 164 NLAWAYMQQNNFEMAEQYYRKALSLGVDMNK----QCNLAICLMHMN------------------RVTEAKSLLQAVKIS 221 (575)
Q Consensus 164 nLG~aY~~qGryeEAe~~yrkALeidPdn~~----~~NLA~iy~~qG------------------r~eEAi~lLekALel 221 (575)
.||.+|.++++|++|+..|++.++++|+++. ++.+|.++..++ ...+|+..|+++++.
T Consensus 74 ~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~ 153 (243)
T PRK10866 74 DLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG 153 (243)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999885 678888865544 246788999999999
Q ss_pred cCCCCCChhHHHHHHHHHHHHH
Q 038048 222 AGNRQMDTSYSRSFERAIQMLT 243 (575)
Q Consensus 222 ~P~n~~~~~~l~slerA~elL~ 243 (575)
.|+......+...+......|+
T Consensus 154 yP~S~ya~~A~~rl~~l~~~la 175 (243)
T PRK10866 154 YPNSQYTTDATKRLVFLKDRLA 175 (243)
T ss_pred CcCChhHHHHHHHHHHHHHHHH
Confidence 9975433333333344444444
No 144
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.95 E-value=0.00094 Score=75.50 Aligned_cols=186 Identities=13% Similarity=0.048 Sum_probs=138.6
Q ss_pred hhhhhhHhhcCCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHH-
Q 038048 40 KGDIFHVIHKVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEE- 118 (575)
Q Consensus 40 Rae~y~~~~~~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeA- 118 (575)
|+-.-+.+...|....-+.+|....-.-|..+.-..+|++|+..-|.....+...|..+...|+.-+|..+...+++..
T Consensus 536 rAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p 615 (913)
T KOG0495|consen 536 RAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP 615 (913)
T ss_pred HHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC
Confidence 4444455667777777788887777777888888999999999888888888888999999999998888855544421
Q ss_pred ----------------------HHHHHHHHHhhHHHHHHHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHH
Q 038048 119 ----------------------IELLQNKLKNIEEGIAFAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWA 168 (575)
Q Consensus 119 ----------------------i~lL~~~L~l~~~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~a 168 (575)
..++.+.-.... ....+.+.....+.++. +..+..-|+....|..+|.+
T Consensus 616 nseeiwlaavKle~en~e~eraR~llakar~~sg-TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi 694 (913)
T KOG0495|consen 616 NSEEIWLAAVKLEFENDELERARDLLAKARSISG-TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQI 694 (913)
T ss_pred CcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC-cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHH
Confidence 111111110000 00112222222222222 33567789999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 169 YMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 169 Y~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
+.++++.+.|...|...++.-|.... |.-|+.+--+.|+.-.|..+|+++.-.+|.+.
T Consensus 695 ~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~ 753 (913)
T KOG0495|consen 695 EEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNA 753 (913)
T ss_pred HHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcc
Confidence 99999999999999999999999999 99999999999999999999999999999875
No 145
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.95 E-value=0.0006 Score=82.45 Aligned_cols=62 Identities=21% Similarity=0.204 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038048 159 SRILGNLAWAYMQQNNFEMAEQYYRKALS--LGVDMNKQCNLAICLMHMNRVTEAKSLLQAVKI 220 (575)
Q Consensus 159 ~~a~~nLG~aY~~qGryeEAe~~yrkALe--idPdn~~~~NLA~iy~~qGr~eEAi~lLekALe 220 (575)
..+|+.|..+|.+.|++++|+.+|++..+ +.|+...+..|...|.+.|++++|+.+|+++..
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~ 747 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKR 747 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44677777777777777777777777655 345544466777777777777777777777655
No 146
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.94 E-value=8e-05 Score=83.63 Aligned_cols=125 Identities=13% Similarity=0.092 Sum_probs=105.8
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHH
Q 038048 64 QLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMA 143 (575)
Q Consensus 64 ~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al 143 (575)
..-.+++...+.+.++.|...|...+.+...|..+..+|+-++|..+-..
T Consensus 17 ~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~------------------------------ 66 (700)
T KOG1156|consen 17 CYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRL------------------------------ 66 (700)
T ss_pred HHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHH------------------------------
Confidence 34456889999999999999999999999999999999999999987211
Q ss_pred HHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 038048 144 RSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISA 222 (575)
Q Consensus 144 ~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~ 222 (575)
.+..++.....|+-+|.++....+|++|+.+|+.||.+.|+|.. +..|+.+-..+++++-....-.+.|+++
T Consensus 67 -------glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~ 139 (700)
T KOG1156|consen 67 -------GLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR 139 (700)
T ss_pred -------HhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence 13446666678888999999999999999999999999999998 8889988889999988888888888888
Q ss_pred CCC
Q 038048 223 GNR 225 (575)
Q Consensus 223 P~n 225 (575)
|..
T Consensus 140 ~~~ 142 (700)
T KOG1156|consen 140 PSQ 142 (700)
T ss_pred hhh
Confidence 864
No 147
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.93 E-value=7.6e-05 Score=76.67 Aligned_cols=99 Identities=18% Similarity=0.076 Sum_probs=85.2
Q ss_pred HHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcC---CcHHHHHHHHH
Q 038048 91 LKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQ---EKSRILGNLAW 167 (575)
Q Consensus 91 l~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~P---d~~~a~~nLG~ 167 (575)
.|+.|.-++..|+|.+|+..+..- +..-| --++++|.||.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~f-------------------------------------i~~YP~s~~~~nA~yWLGe 186 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAF-------------------------------------IKKYPNSTYTPNAYYWLGE 186 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH-------------------------------------HHcCCCCcccchhHHHHHH
Confidence 789999999999999999874331 11222 23569999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 168 AYMQQNNFEMAEQYYRKALSLGVDMNK----QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 168 aY~~qGryeEAe~~yrkALeidPdn~~----~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
+++.+|+|++|...|..+++-.|+.+. ++-||.++.++|+.++|...|+++++..|...
T Consensus 187 ~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 187 SLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 999999999999999999999998874 89999999999999999999999999999753
No 148
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.92 E-value=7.2e-05 Score=59.59 Aligned_cols=50 Identities=22% Similarity=0.092 Sum_probs=45.1
Q ss_pred HHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcC
Q 038048 65 LIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGR 114 (575)
Q Consensus 65 l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~ga 114 (575)
+..|++++|+.+|++++..+|++..+++.||.+|..+|++++|+.++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999985543
No 149
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.89 E-value=0.00096 Score=80.73 Aligned_cols=60 Identities=13% Similarity=0.056 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038048 161 ILGNLAWAYMQQNNFEMAEQYYRKALSLG-VDMNK-QCNLAICLMHMNRVTEAKSLLQAVKI 220 (575)
Q Consensus 161 a~~nLG~aY~~qGryeEAe~~yrkALeid-Pdn~~-~~NLA~iy~~qGr~eEAi~lLekALe 220 (575)
+|+.|..+|.+.|++++|+.+|+++.+.+ +.+.. +..|...|.+.|++++|+.+|+++.+
T Consensus 581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~ 642 (1060)
T PLN03218 581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK 642 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 44444444555555555555555444443 11222 44444444444444444444444443
No 150
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.89 E-value=0.00013 Score=74.88 Aligned_cols=104 Identities=12% Similarity=-0.039 Sum_probs=88.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHH
Q 038048 57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDRV---DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGI 133 (575)
Q Consensus 57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~---~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~ 133 (575)
++++..-++..||+..|+..|..-|+..|+. +.|+|-||.+++.+|+|++|...+...+.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k----------------- 206 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVK----------------- 206 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHH-----------------
Confidence 5666677788999999999999999998876 57999999999999999999998544211
Q ss_pred HHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048 134 AFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK 194 (575)
Q Consensus 134 a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~ 194 (575)
.++ -.|.-+++++-||.+...+|+.++|...|+++++..|+...
T Consensus 207 -----------~~P------~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 207 -----------DYP------KSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred -----------hCC------CCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 111 25666789999999999999999999999999999999886
No 151
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.87 E-value=0.00022 Score=74.40 Aligned_cols=157 Identities=17% Similarity=0.129 Sum_probs=109.2
Q ss_pred HHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHH---HhhH------HHHHH
Q 038048 65 LIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKL---KNIE------EGIAF 135 (575)
Q Consensus 65 l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L---~l~~------~a~a~ 135 (575)
+.+..++.|+.+..-..+.+|.+..++..||.+|....+|.+|.++|.+--....+.-+..+ ..++ +++..
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV 100 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRV 100 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 56778899999999888999988888999999999999999999985432221111111110 0000 01110
Q ss_pred H-------------hHHHHHH-HHhch----hhHHhhcC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-
Q 038048 136 A-------------GVKTKMA-RSQGK----KIQITVEQ--EKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK- 194 (575)
Q Consensus 136 ~-------------~nla~al-~sqg~----k~aL~L~P--d~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~- 194 (575)
. .++..+. .+.++ +..+.--| ..+....|.|.++++.|+|++|++-|+.|++..--++.
T Consensus 101 ~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpll 180 (459)
T KOG4340|consen 101 AFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLL 180 (459)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchh
Confidence 0 0011110 01111 11222233 55678999999999999999999999999999988888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038048 195 QCNLAICLMHMNRVTEAKSLLQAVKIS 221 (575)
Q Consensus 195 ~~NLA~iy~~qGr~eEAi~lLekALel 221 (575)
.+|+|.+....|+++.|+++.-++++.
T Consensus 181 AYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 181 AYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 999999999999999999998887764
No 152
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.86 E-value=6.8e-05 Score=68.62 Aligned_cols=67 Identities=31% Similarity=0.342 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 160 RILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK----QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 160 ~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~----~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
.+++++|+++..+|+.++|+.+|++|++...+... ++.||.+|..+|++++|+.+|++++...|++.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~ 72 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDE 72 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc
Confidence 37899999999999999999999999998765542 78999999999999999999999999888744
No 153
>PLN03077 Protein ECB2; Provisional
Probab=97.84 E-value=0.00088 Score=78.92 Aligned_cols=45 Identities=9% Similarity=-0.056 Sum_probs=31.3
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Q 038048 63 IQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEAR 111 (575)
Q Consensus 63 l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~ 111 (575)
.+...|+.++|...|... +.+..+|+.|...|.+.|+.++|++++
T Consensus 533 ~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf 577 (857)
T PLN03077 533 LYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELF 577 (857)
T ss_pred HHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHH
Confidence 344457777777777664 334557777888888888888888774
No 154
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.82 E-value=3.8e-05 Score=81.11 Aligned_cols=98 Identities=22% Similarity=0.164 Sum_probs=90.1
Q ss_pred HHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHH
Q 038048 91 LKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYM 170 (575)
Q Consensus 91 l~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~ 170 (575)
+..-|+.|+++|+|+|||.+|... +.+.|+++..+.|.+.+|+
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~-------------------------------------ia~~P~NpV~~~NRA~AYl 142 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTA-------------------------------------IAVYPHNPVYHINRALAYL 142 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhh-------------------------------------hccCCCCccchhhHHHHHH
Confidence 346799999999999999997664 5679999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048 171 QQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNR 225 (575)
Q Consensus 171 ~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n 225 (575)
++.+|..|+.-...|+.++-.... +...|.+-..+|...||.+-++.+|.+.|++
T Consensus 143 k~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 143 KQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCccc
Confidence 999999999999999999988888 8889999999999999999999999999974
No 155
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.81 E-value=3.7e-05 Score=57.49 Aligned_cols=41 Identities=32% Similarity=0.249 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHH
Q 038048 160 RILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAI 200 (575)
Q Consensus 160 ~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~ 200 (575)
.++..||.+|..+|++++|+.+|+++|+.+|+++. +..||.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 47889999999999999999999999999999999 888875
No 156
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.80 E-value=0.00067 Score=66.94 Aligned_cols=147 Identities=16% Similarity=0.082 Sum_probs=95.9
Q ss_pred cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHH-----HHHHHHHHHHhhHHHHHHHhHHHH
Q 038048 67 DKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEE-----EIELLQNKLKNIEEGIAFAGVKTK 141 (575)
Q Consensus 67 ~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLee-----Ai~lL~~~L~l~~~a~a~~~nla~ 141 (575)
.-||+.+..-..+.+...|.+ .-.+.||+.+.++|++.||..+|.+++.- +.-+|+.....+ .....+.
T Consensus 69 ~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqf-----a~~~~A~ 142 (251)
T COG4700 69 KLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQF-----AIQEFAA 142 (251)
T ss_pred hcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHH-----hhccHHH
Confidence 347777777777777777764 35778999999999999999997665431 111122111100 0011111
Q ss_pred HHHHhchhhHHhhcCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038048 142 MARSQGKKIQITVEQE--KSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQCNLAICLMHMNRVTEAKSLLQAVK 219 (575)
Q Consensus 142 al~sqg~k~aL~L~Pd--~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~~~NLA~iy~~qGr~eEAi~lLekAL 219 (575)
+.... +...+.+|. .++.+..+|.+|..+|++++|+..|+.++...|+....+.++..+.+||+.+||..-+..+.
T Consensus 143 a~~tL--e~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 143 AQQTL--EDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHH--HHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 11000 011122332 23466778899999999999999999999999988888888899999999988888777666
Q ss_pred HH
Q 038048 220 IS 221 (575)
Q Consensus 220 el 221 (575)
+.
T Consensus 221 d~ 222 (251)
T COG4700 221 DT 222 (251)
T ss_pred HH
Confidence 53
No 157
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.80 E-value=0.00034 Score=65.92 Aligned_cols=105 Identities=16% Similarity=0.138 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHH
Q 038048 88 DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAW 167 (575)
Q Consensus 88 ~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~ 167 (575)
+..++.-|...++.|+|++|++.+... ... . --.+.-..+...||.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L--------~~r---y-----------------------P~g~ya~qAqL~l~y 55 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEAL--------DTR---Y-----------------------PFGEYAEQAQLDLAY 55 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHH--------Hhc---C-----------------------CCCcccHHHHHHHHH
Confidence 557888899999999999999873220 000 0 012233458899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHcCC---------------HHHHHHHHHHHHHHcCCCC
Q 038048 168 AYMQQNNFEMAEQYYRKALSLGVDMNK----QCNLAICLMHMNR---------------VTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 168 aY~~qGryeEAe~~yrkALeidPdn~~----~~NLA~iy~~qGr---------------~eEAi~lLekALel~P~n~ 226 (575)
+|+..|+|++|+..|++-++++|.++. ++-.|.++..+.. ..+|...|++++...|+..
T Consensus 56 ayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 56 AYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 999999999999999999999999885 6778999988887 8888888888888888754
No 158
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.76 E-value=4.6e-05 Score=53.28 Aligned_cols=33 Identities=39% Similarity=0.556 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 038048 160 RILGNLAWAYMQQNNFEMAEQYYRKALSLGVDM 192 (575)
Q Consensus 160 ~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn 192 (575)
.+|+++|.+|..+|++++|+.+|++||+++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 478999999999999999999999999999974
No 159
>PLN03077 Protein ECB2; Provisional
Probab=97.76 E-value=0.0014 Score=77.16 Aligned_cols=64 Identities=13% Similarity=0.112 Sum_probs=34.3
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038048 158 KSRILGNLAWAYMQQNNFEMAEQYYRKALS--LGVDMNKQCNLAICLMHMNRVTEAKSLLQAVKIS 221 (575)
Q Consensus 158 ~~~a~~nLG~aY~~qGryeEAe~~yrkALe--idPdn~~~~NLA~iy~~qGr~eEAi~lLekALel 221 (575)
+..+|+.|...|.+.|+.++|+.+|++.++ +.||...+..+-.++.+.|++++|..+|+.+.+.
T Consensus 553 d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~ 618 (857)
T PLN03077 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEK 618 (857)
T ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHH
Confidence 344555555555555555555555555554 3344444444444555555555555555555533
No 160
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.74 E-value=4.4e-05 Score=82.12 Aligned_cols=54 Identities=19% Similarity=0.223 Sum_probs=39.5
Q ss_pred ChHHHHHHHHHHHHcCCCc----H--HHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHH
Q 038048 69 DPSRAVSLFWAAINAGDRV----D--SALKDMAVVMKQLDRSDEAIEARSGRIEEEIELL 122 (575)
Q Consensus 69 d~eeAi~lf~kAL~l~p~~----~--~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL 122 (575)
.++.|+++|..-|++-... + .++-+||+.|+-+|+|++||..-..+++.+.+.-
T Consensus 170 al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efG 229 (639)
T KOG1130|consen 170 ALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFG 229 (639)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhh
Confidence 4577888888777653222 2 3788999999999999999998666666554433
No 161
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.00047 Score=71.73 Aligned_cols=114 Identities=16% Similarity=0.146 Sum_probs=94.4
Q ss_pred HhhcCCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCC-HHHHHHHHhcCHHHHHHHHHH
Q 038048 46 VIHKVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDR-SDEAIEARSGRIEEEIELLQN 124 (575)
Q Consensus 46 ~~~~~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGr-ydEAie~~~gaLeeAi~lL~~ 124 (575)
.....|..-..+...+.+++..++.+.|...|.+|+++.|++++.+..+|.++..+.. ...+.. ..++
T Consensus 148 ~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a---------~~ll-- 216 (287)
T COG4235 148 HLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKA---------RALL-- 216 (287)
T ss_pred HHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHH---------HHHH--
Confidence 4567788888899999999999999999999999999999999999999988776542 222211 1111
Q ss_pred HHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048 125 KLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK 194 (575)
Q Consensus 125 ~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~ 194 (575)
+.++.++|.+..+++.||..++++|+|.+|+..++..|+..|.+..
T Consensus 217 ------------------------~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 217 ------------------------RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred ------------------------HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 1346789999999999999999999999999999999999987775
No 162
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.70 E-value=0.00083 Score=71.50 Aligned_cols=148 Identities=14% Similarity=0.080 Sum_probs=96.7
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHH--HHHHHHHH-HHhh--HHHHHHHh
Q 038048 63 IQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEE--EIELLQNK-LKNI--EEGIAFAG 137 (575)
Q Consensus 63 l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLee--Ai~lL~~~-L~l~--~~a~a~~~ 137 (575)
..+--+|+++|+..|.-+.+.+.-..+...+||.++.-+|.|.||..+..++-+. .+.++-.. +++. .....+..
T Consensus 66 C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~ 145 (557)
T KOG3785|consen 66 CYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHS 145 (557)
T ss_pred HHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 3344566777777666666555445556666777777777777776663332211 11111111 1100 01112222
Q ss_pred HHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHH
Q 038048 138 VKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQ 216 (575)
Q Consensus 138 nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLe 216 (575)
++.+.. +-...|+.+.+..-.|++|+..|.++|.-+|+... ..++|.||.++.=++-+...+.
T Consensus 146 ~LqD~~----------------EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~ 209 (557)
T KOG3785|consen 146 SLQDTL----------------EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLK 209 (557)
T ss_pred HHhhhH----------------HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHH
Confidence 222222 23356777888888999999999999999999998 8899999999999999999999
Q ss_pred HHHHHcCCCC
Q 038048 217 AVKISAGNRQ 226 (575)
Q Consensus 217 kALel~P~n~ 226 (575)
-.|...|+..
T Consensus 210 vYL~q~pdSt 219 (557)
T KOG3785|consen 210 VYLRQFPDST 219 (557)
T ss_pred HHHHhCCCcH
Confidence 9999988754
No 163
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.69 E-value=3.4e-05 Score=55.13 Aligned_cols=33 Identities=27% Similarity=0.319 Sum_probs=28.6
Q ss_pred HHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHH
Q 038048 181 YYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKS 213 (575)
Q Consensus 181 ~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~ 213 (575)
+|++||+++|+++. ++|||.+|..+|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 47889999999998 9999999999999998863
No 164
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.68 E-value=0.0067 Score=53.61 Aligned_cols=66 Identities=32% Similarity=0.411 Sum_probs=36.4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Q 038048 158 KSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAG 223 (575)
Q Consensus 158 ~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P 223 (575)
....+.+++..+...+++++|+..+.+++...|.... ...++.++...|.+++|...+.+++...|
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 201 DAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 3445555555555555555555555555555555333 44555554455555555555555555554
No 165
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.66 E-value=0.00083 Score=75.73 Aligned_cols=138 Identities=14% Similarity=0.149 Sum_probs=121.1
Q ss_pred cCCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHh
Q 038048 49 KVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKN 128 (575)
Q Consensus 49 ~~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l 128 (575)
+.|.....++--|...--.|+-++|..+-+.++..++.+...|.-+|+++..-.+|+|||.+|+.+
T Consensus 36 k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nA-------------- 101 (700)
T KOG1156|consen 36 KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNA-------------- 101 (700)
T ss_pred hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHH--------------
Confidence 445544455555555555678899999999999999999999999999999999999999997664
Q ss_pred hHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCC
Q 038048 129 IEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNR 207 (575)
Q Consensus 129 ~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr 207 (575)
+.++|++..++..|+.+..++++|+-....-.+.|++.|.+.. |..+|..+...|+
T Consensus 102 -----------------------l~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~ 158 (700)
T KOG1156|consen 102 -----------------------LKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGE 158 (700)
T ss_pred -----------------------HhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 5679999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHHcC
Q 038048 208 VTEAKSLLQAVKISAG 223 (575)
Q Consensus 208 ~eEAi~lLekALel~P 223 (575)
+..|..+++.......
T Consensus 159 y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 159 YKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999999888763
No 166
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.65 E-value=0.00011 Score=50.80 Aligned_cols=33 Identities=36% Similarity=0.447 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 038048 160 RILGNLAWAYMQQNNFEMAEQYYRKALSLGVDM 192 (575)
Q Consensus 160 ~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn 192 (575)
.+++.+|.+|..+|++++|+.+|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 478889999999999999999999999999875
No 167
>PRK11906 transcriptional regulator; Provisional
Probab=97.64 E-value=0.0005 Score=75.48 Aligned_cols=115 Identities=11% Similarity=0.004 Sum_probs=98.8
Q ss_pred ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch
Q 038048 69 DPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK 148 (575)
Q Consensus 69 d~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~ 148 (575)
+..+|..+-++|+++++.++.++..+|.++.-.++++.|+..+.+
T Consensus 319 ~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~r----------------------------------- 363 (458)
T PRK11906 319 AAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQ----------------------------------- 363 (458)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHH-----------------------------------
Confidence 456788899999999999999999999999999999999987433
Q ss_pred hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038048 149 KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK--QCNLAICLMHMNRVTEAKSLLQAVKI 220 (575)
Q Consensus 149 k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~--~~NLA~iy~~qGr~eEAi~lLekALe 220 (575)
++.++|+.+.+++..|++....|+.++|.+.+++|++++|--.. ...|-.-..--...++|+.+|-+-.+
T Consensus 364 --A~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (458)
T PRK11906 364 --AKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKETE 435 (458)
T ss_pred --HhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhccc
Confidence 36789999999999999999999999999999999999998887 55666624455678999999876443
No 168
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=0.0016 Score=66.73 Aligned_cols=124 Identities=16% Similarity=0.167 Sum_probs=95.1
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHH
Q 038048 64 QLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMA 143 (575)
Q Consensus 64 ~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al 143 (575)
....+.+++|+++|...|+-+|.+..++...-.++..+|+--+||+.. ...++....+...+..++++|
T Consensus 96 lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~l-----------n~YL~~F~~D~EAW~eLaeiY 164 (289)
T KOG3060|consen 96 LEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKEL-----------NEYLDKFMNDQEAWHELAEIY 164 (289)
T ss_pred HHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHH-----------HHHHHHhcCcHHHHHHHHHHH
Confidence 345689999999999999999999888887777888899988888762 222333344445566666666
Q ss_pred HHhch--------hhHHhhcCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHH-HHHH
Q 038048 144 RSQGK--------KIQITVEQEKSRILGNLAWAYMQQN---NFEMAEQYYRKALSLGVDMNK-QCNL 198 (575)
Q Consensus 144 ~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qG---ryeEAe~~yrkALeidPdn~~-~~NL 198 (575)
.+.+. +..+.+.|.++..+..||.+++-+| ++.-|..+|.+||++.|.+.. ++.+
T Consensus 165 ~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 165 LSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGI 231 (289)
T ss_pred HhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHH
Confidence 65555 3457789999999999999888887 567899999999999997665 5533
No 169
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.59 E-value=0.0016 Score=76.61 Aligned_cols=158 Identities=16% Similarity=0.036 Sum_probs=101.1
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCc-----HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHH
Q 038048 62 HIQLIDKDPSRAVSLFWAAINAGDRV-----DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFA 136 (575)
Q Consensus 62 ~l~l~~kd~eeAi~lf~kAL~l~p~~-----~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~ 136 (575)
.+....+++++|..++++++...+.. ..+...+|.++...|++++|+.++..+++.....- ... ......
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g-~~~----~~~~~~ 534 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHD-VYH----YALWSL 534 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc-chH----HHHHHH
Confidence 44567899999999999999854332 23567899999999999999999666554322110 000 000112
Q ss_pred hHHHHHHHHhch--------hhHHhh-----c---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HH-
Q 038048 137 GVKTKMARSQGK--------KIQITV-----E---QEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDM-----NK- 194 (575)
Q Consensus 137 ~nla~al~sqg~--------k~aL~L-----~---Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn-----~~- 194 (575)
.+++.++...|+ ...+.+ . +....++..+|.++..+|++++|+..+++++.+.... ..
T Consensus 535 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 614 (903)
T PRK04841 535 LQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQC 614 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHH
Confidence 233333333333 011111 0 1122345677888888888888888888888885421 12
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 038048 195 QCNLAICLMHMNRVTEAKSLLQAVKISAGN 224 (575)
Q Consensus 195 ~~NLA~iy~~qGr~eEAi~lLekALel~P~ 224 (575)
+.++|.++...|++++|...+++++.+...
T Consensus 615 ~~~la~~~~~~G~~~~A~~~l~~a~~~~~~ 644 (903)
T PRK04841 615 LAMLAKISLARGDLDNARRYLNRLENLLGN 644 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 556888888888888888888888887554
No 170
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.59 E-value=0.00023 Score=69.53 Aligned_cols=74 Identities=15% Similarity=0.083 Sum_probs=58.6
Q ss_pred HhhcCCcHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCC-----------HH
Q 038048 152 ITVEQEKSRILGNLAWAYMQQN----------NFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNR-----------VT 209 (575)
Q Consensus 152 L~L~Pd~~~a~~nLG~aY~~qG----------ryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr-----------~e 209 (575)
...+|.+.+.+++-|.+++.+. .+++|+.-|++||.|+|+... +++||++|..++. |+
T Consensus 18 y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~ 97 (186)
T PF06552_consen 18 YAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFE 97 (186)
T ss_dssp HHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred HHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHH
Confidence 4568999999999998887774 457788999999999999999 9999999988776 78
Q ss_pred HHHHHHHHHHHHcCCC
Q 038048 210 EAKSLLQAVKISAGNR 225 (575)
Q Consensus 210 EAi~lLekALel~P~n 225 (575)
+|..+|+++...+|++
T Consensus 98 kA~~~FqkAv~~~P~n 113 (186)
T PF06552_consen 98 KATEYFQKAVDEDPNN 113 (186)
T ss_dssp HHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHhcCCCc
Confidence 8889999999999975
No 171
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.59 E-value=5e-05 Score=80.22 Aligned_cols=106 Identities=13% Similarity=0.124 Sum_probs=80.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCCh----hHHHHHH
Q 038048 162 LGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMDT----SYSRSFE 236 (575)
Q Consensus 162 ~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~~~----~~l~sle 236 (575)
+-.-|..|+++|+|+||+.+|.+++.++|.|+. +.|.|.+|+++.+|..|+.-+..++.++.....+. .+-..++
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 456789999999999999999999999999999 99999999999999999999999999865322111 1123344
Q ss_pred HHHHHHHHhccccccCcccccccchhhhcCC
Q 038048 237 RAIQMLTELESPSVLKLTELEVGDDQKNQRP 267 (575)
Q Consensus 237 rA~elL~ele~al~~~p~~~e~~~~~~~~~s 267 (575)
...++-...|..+.+.|...+.......+.+
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S 210 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLARINS 210 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence 4555555677777777776655444344443
No 172
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.56 E-value=0.00026 Score=70.43 Aligned_cols=104 Identities=21% Similarity=0.129 Sum_probs=85.2
Q ss_pred HHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHH
Q 038048 91 LKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYM 170 (575)
Q Consensus 91 l~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~ 170 (575)
+..-|+-++..|.|++|..-|+.+++.-...... .-+-.|.|.|.+++
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e--------------------------------~rsIly~Nraaa~i 145 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTE--------------------------------ERSILYSNRAAALI 145 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHH--------------------------------HHHHHHhhhHHHHH
Confidence 4456889999999999998876665432111110 01227889999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 171 QQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 171 ~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
+++.++.|+....+||+++|.+.. ....|.+|-++.+|++|+.-|.++++++|..-
T Consensus 146 Kl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 146 KLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred HhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchH
Confidence 999999999999999999999999 88889999999999999999999999999643
No 173
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.53 E-value=7.6e-05 Score=53.35 Aligned_cols=34 Identities=21% Similarity=0.209 Sum_probs=32.0
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHH
Q 038048 76 LFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIE 109 (575)
Q Consensus 76 lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie 109 (575)
+|++||+++|++..++++||.+|..+|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4889999999999999999999999999999974
No 174
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.53 E-value=0.00066 Score=76.26 Aligned_cols=87 Identities=17% Similarity=0.088 Sum_probs=72.6
Q ss_pred hHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhc
Q 038048 70 PSRAVSLFWAAINA--GDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQG 147 (575)
Q Consensus 70 ~eeAi~lf~kAL~l--~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg 147 (575)
...|....++++.+ ++..+.++..+|.++...|++++|+..+.+
T Consensus 400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~r---------------------------------- 445 (517)
T PRK10153 400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINK---------------------------------- 445 (517)
T ss_pred HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHH----------------------------------
Confidence 34556666676664 666678899999999999999999988544
Q ss_pred hhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048 148 KKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK 194 (575)
Q Consensus 148 ~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~ 194 (575)
++.++|. ..+|..+|.+|...|++++|+..|++|+.++|..+.
T Consensus 446 ---Al~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 446 ---AIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred ---HHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 3566774 679999999999999999999999999999999997
No 175
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.52 E-value=0.0014 Score=61.86 Aligned_cols=105 Identities=13% Similarity=0.045 Sum_probs=86.6
Q ss_pred CCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhh
Q 038048 53 GDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDR---VDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNI 129 (575)
Q Consensus 53 ~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~---~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~ 129 (575)
....++..+...+..+++++|++.|+.....-|. ...+...||.+|.+.+++++|+..+..
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~r---------------- 72 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDR---------------- 72 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHH----------------
Confidence 3445667778889999999999999998887655 356899999999999999999987322
Q ss_pred HHHHHHHhHHHHHHHHhchhhHHhhcCCcHH---HHHHHHHHHHHcCC---------------HHHHHHHHHHHHHhCCC
Q 038048 130 EEGIAFAGVKTKMARSQGKKIQITVEQEKSR---ILGNLAWAYMQQNN---------------FEMAEQYYRKALSLGVD 191 (575)
Q Consensus 130 ~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~---a~~nLG~aY~~qGr---------------yeEAe~~yrkALeidPd 191 (575)
-+.++|.++. +++..|.+++.+.. ..+|...|++.+...|+
T Consensus 73 ---------------------FirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~ 131 (142)
T PF13512_consen 73 ---------------------FIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPN 131 (142)
T ss_pred ---------------------HHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcC
Confidence 2556666654 88999999999887 99999999999999998
Q ss_pred CHH
Q 038048 192 MNK 194 (575)
Q Consensus 192 n~~ 194 (575)
..-
T Consensus 132 S~y 134 (142)
T PF13512_consen 132 SEY 134 (142)
T ss_pred Chh
Confidence 763
No 176
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.52 E-value=0.00098 Score=62.48 Aligned_cols=102 Identities=20% Similarity=0.209 Sum_probs=79.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHH
Q 038048 60 AKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVK 139 (575)
Q Consensus 60 A~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nl 139 (575)
-++...-.++.+.|++.|.++|.+-|..+.+|+|.|.+|.-+|+.++|++-..++++ +.+..
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale----Lag~~-------------- 110 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALE----LAGDQ-------------- 110 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHH----hcCcc--------------
Confidence 334555678999999999999999999999999999999999999999986333222 11111
Q ss_pred HHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048 140 TKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK 194 (575)
Q Consensus 140 a~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~ 194 (575)
+.+. -.++...|.+|..+|+-+.|..-|..|-++-..+..
T Consensus 111 trta---------------cqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FAr 150 (175)
T KOG4555|consen 111 TRTA---------------CQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFAR 150 (175)
T ss_pred chHH---------------HHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHHH
Confidence 1111 127888999999999999999999999888766664
No 177
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.51 E-value=0.00019 Score=74.87 Aligned_cols=148 Identities=16% Similarity=0.118 Sum_probs=88.8
Q ss_pred ChHHHHHHHHHHHHcC-C-CcHHHHHHHHHHHHHCCCHHHHHHHHhcC--HHHHHHHHHHHHHhhHHHHHHHhHHHHHHH
Q 038048 69 DPSRAVSLFWAAINAG-D-RVDSALKDMAVVMKQLDRSDEAIEARSGR--IEEEIELLQNKLKNIEEGIAFAGVKTKMAR 144 (575)
Q Consensus 69 d~eeAi~lf~kAL~l~-p-~~~~Al~nLA~iy~qqGrydEAie~~~ga--LeeAi~lL~~~L~l~~~a~a~~~nla~al~ 144 (575)
+-+.++.-+...+... + .+.....-.|.+|...|++++|+.+..+. +|...-...-.+. .+..+.+.
T Consensus 81 ~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~~~lE~~al~Vqi~L~---------~~R~dlA~ 151 (290)
T PF04733_consen 81 DKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKGGSLELLALAVQILLK---------MNRPDLAE 151 (290)
T ss_dssp THHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTTTCHHHHHHHHHHHHH---------TT-HHHHH
T ss_pred chHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHccCcccHHHHHHHHHHH---------cCCHHHHH
Confidence 4455655554443322 1 23345566688999999999999985443 2211000111111 11111111
Q ss_pred HhchhhHHhhcCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038048 145 SQGKKIQITVEQEKSRILGNLAWAYMQQN--NFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKIS 221 (575)
Q Consensus 145 sqg~k~aL~L~Pd~~~a~~nLG~aY~~qG--ryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel 221 (575)
..- +.....+.+..-+..-.+++.+..| ++.+|.-+|++..+..+.++. .+.+|.+++.+|+|+||+..+++++..
T Consensus 152 k~l-~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~ 230 (290)
T PF04733_consen 152 KEL-KNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK 230 (290)
T ss_dssp HHH-HHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC
T ss_pred HHH-HHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 100 1122334444444444557777777 699999999998888788888 788999999999999999999999988
Q ss_pred cCCCC
Q 038048 222 AGNRQ 226 (575)
Q Consensus 222 ~P~n~ 226 (575)
+|.++
T Consensus 231 ~~~~~ 235 (290)
T PF04733_consen 231 DPNDP 235 (290)
T ss_dssp -CCHH
T ss_pred ccCCH
Confidence 87654
No 178
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.43 E-value=0.0076 Score=53.28 Aligned_cols=63 Identities=21% Similarity=0.159 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Q 038048 161 ILGNLAWAYMQQNNFEMAEQYYRKALSLGVD-MNK-QCNLAICLMHMNRVTEAKSLLQAVKISAG 223 (575)
Q Consensus 161 a~~nLG~aY~~qGryeEAe~~yrkALeidPd-n~~-~~NLA~iy~~qGr~eEAi~lLekALel~P 223 (575)
.+..++..+...+++++|+..+.+++...+. ... ..+++.++...+++++|+..+..++...|
T Consensus 169 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 233 (291)
T COG0457 169 ALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDP 233 (291)
T ss_pred HHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCc
Confidence 3444444444445555555555555555544 233 44455555555555555555555555444
No 179
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.43 E-value=0.0013 Score=65.53 Aligned_cols=97 Identities=21% Similarity=0.202 Sum_probs=82.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCcH-----HHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHH
Q 038048 61 KHIQLIDKDPSRAVSLFWAAINAGDRVD-----SALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAF 135 (575)
Q Consensus 61 ~~l~l~~kd~eeAi~lf~kAL~l~p~~~-----~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~ 135 (575)
+.-++..|++++|..-|..||.+-|... -.|.|-|.+++++++++.||....+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsK---------------------- 159 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSK---------------------- 159 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHh----------------------
Confidence 3446778999999999999999877643 2577889999999999999986333
Q ss_pred HhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048 136 AGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK 194 (575)
Q Consensus 136 ~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~ 194 (575)
+|.++|.+..++...|.+|.++.+|++|+.-|.++++++|....
T Consensus 160 ---------------aiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~e 203 (271)
T KOG4234|consen 160 ---------------AIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRRE 203 (271)
T ss_pred ---------------hHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHH
Confidence 46788999999999999999999999999999999999997653
No 180
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.38 E-value=0.0032 Score=73.97 Aligned_cols=129 Identities=11% Similarity=0.094 Sum_probs=81.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCC----c--HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHH
Q 038048 62 HIQLIDKDPSRAVSLFWAAINAGDR----V--DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAF 135 (575)
Q Consensus 62 ~l~l~~kd~eeAi~lf~kAL~l~p~----~--~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~ 135 (575)
..+...|++++|+.+|++++..... . ..++.++|.++..+|++++|+.+....++.+........ ......
T Consensus 499 ~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~ 575 (903)
T PRK04841 499 EVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQL---PMHEFL 575 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccc---cHHHHH
Confidence 4456789999999999999865322 1 246788999999999999999996665554332110000 000001
Q ss_pred HhHHHHHHHHhch--------hhHHhh----cC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 038048 136 AGVKTKMARSQGK--------KIQITV----EQ-EKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMN 193 (575)
Q Consensus 136 ~~nla~al~sqg~--------k~aL~L----~P-d~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~ 193 (575)
...++.++...|+ ...+.+ .+ ....++..+|.++...|++++|...+.+++.+.....
T Consensus 576 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~ 646 (903)
T PRK04841 576 LRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGR 646 (903)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccc
Confidence 1122333333333 111111 12 2345777899999999999999999999998876653
No 181
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.00053 Score=69.68 Aligned_cols=73 Identities=22% Similarity=0.222 Sum_probs=68.8
Q ss_pred HHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Q 038048 151 QITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAG 223 (575)
Q Consensus 151 aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P 223 (575)
+|.++|..+..|.|.+..|+++.+++.++..-++|++++|+... ++-||.+++....|++|+..|+++..+..
T Consensus 36 aI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r 109 (284)
T KOG4642|consen 36 AICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLR 109 (284)
T ss_pred HHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHh
Confidence 36789999999999999999999999999999999999999999 99999999999999999999999977644
No 182
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.34 E-value=0.0016 Score=61.06 Aligned_cols=94 Identities=19% Similarity=0.136 Sum_probs=80.5
Q ss_pred HHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHH
Q 038048 92 KDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQ 171 (575)
Q Consensus 92 ~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~ 171 (575)
..-|.++...|+.++|++.+.++ +.+-|..+.+|+|.+.+|.-
T Consensus 47 El~~valaE~g~Ld~AlE~F~qa-------------------------------------l~l~P~raSayNNRAQa~RL 89 (175)
T KOG4555|consen 47 ELKAIALAEAGDLDGALELFGQA-------------------------------------LCLAPERASAYNNRAQALRL 89 (175)
T ss_pred HHHHHHHHhccchHHHHHHHHHH-------------------------------------HHhcccchHhhccHHHHHHH
Confidence 34588889999999999885443 45678889999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 038048 172 QNNFEMAEQYYRKALSLGVDMNK-----QCNLAICLMHMNRVTEAKSLLQAVKISA 222 (575)
Q Consensus 172 qGryeEAe~~yrkALeidPdn~~-----~~NLA~iy~~qGr~eEAi~lLekALel~ 222 (575)
+|+.++|+.-+.+||++.-+.-. ++..|.+|..+|+-+.|..-|+.+-++-
T Consensus 90 q~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 90 QGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred cCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence 99999999999999999754432 5678999999999999999999988863
No 183
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.26 E-value=0.017 Score=59.25 Aligned_cols=168 Identities=13% Similarity=0.057 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHCCCHHHHHHHHhcCHH-------HHHHHHHHH
Q 038048 56 PYVRAKHIQLIDKDPSRAVSLFWAAINAGDRV---DSALKDMAVVMKQLDRSDEAIEARSGRIE-------EEIELLQNK 125 (575)
Q Consensus 56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~---~~Al~nLA~iy~qqGrydEAie~~~gaLe-------eAi~lL~~~ 125 (575)
.++..+...+..|++++|+..|++.....|.. ..++..++.++.+.+++++|+.....=+. .+-..+-..
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylkg 115 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKG 115 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHH
Confidence 34455566789999999999999999887765 46899999999999999999988111000 000111111
Q ss_pred H------HhhHHHHHH----HhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038048 126 L------KNIEEGIAF----AGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALS 187 (575)
Q Consensus 126 L------~l~~~a~a~----~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALe 187 (575)
+ .....+... +...........+ .++..++..-..-=..+|..|.+.|.+-.|+..++++++
T Consensus 116 Ls~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e 195 (254)
T COG4105 116 LSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLE 195 (254)
T ss_pred HHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 1 000111111 1111111111111 112222222222335567999999999999999999999
Q ss_pred hCCCCHH----HHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 038048 188 LGVDMNK----QCNLAICLMHMNRVTEAKSLLQAVKISAGN 224 (575)
Q Consensus 188 idPdn~~----~~NLA~iy~~qGr~eEAi~lLekALel~P~ 224 (575)
-.|+... +.-|..+|..+|-.++|...-. +|..+..
T Consensus 196 ~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~-vl~~N~p 235 (254)
T COG4105 196 NYPDTSAVREALARLEEAYYALGLTDEAKKTAK-VLGANYP 235 (254)
T ss_pred ccccccchHHHHHHHHHHHHHhCChHHHHHHHH-HHHhcCC
Confidence 9988774 6788899999999999988754 5555543
No 184
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.22 E-value=0.0032 Score=57.84 Aligned_cols=64 Identities=22% Similarity=0.184 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Q 038048 160 RILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAG 223 (575)
Q Consensus 160 ~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P 223 (575)
.++..++..+...|++++|+..+++++.++|-+.. +..|-.+|..+|+..+|+..|+++...-.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~ 127 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLR 127 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 36778899999999999999999999999999999 99999999999999999999999877543
No 185
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.22 E-value=0.0044 Score=68.58 Aligned_cols=141 Identities=13% Similarity=0.047 Sum_probs=102.4
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHH
Q 038048 63 IQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKM 142 (575)
Q Consensus 63 l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~a 142 (575)
.+..+.++..-+++-.+||+++|+-+.||.-||.- ...-..||++++.++++.+...++........+. ....
T Consensus 177 ~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~-----~~e~ 249 (539)
T PF04184_consen 177 KAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGH-----FWEA 249 (539)
T ss_pred HHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccc-----hhhh
Confidence 34667899999999999999999998888766542 3455788898888877777666665431111000 0000
Q ss_pred HHHhchhhHHhhcCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHH-HHHHHHHHHHcCCHHHHHHHHHH
Q 038048 143 ARSQGKKIQITVEQEK--SRILGNLAWAYMQQNNFEMAEQYYRKALSLGVD--MNK-QCNLAICLMHMNRVTEAKSLLQA 217 (575)
Q Consensus 143 l~sqg~k~aL~L~Pd~--~~a~~nLG~aY~~qGryeEAe~~yrkALeidPd--n~~-~~NLA~iy~~qGr~eEAi~lLek 217 (575)
+.....+ .-+-..||.+..++|+.+||+++|+..++..|. +.. +.||..+|+.+++|+++..++.+
T Consensus 250 ---------~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 250 ---------WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred ---------hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 0000111 225577999999999999999999999998875 334 89999999999999999999988
Q ss_pred HH
Q 038048 218 VK 219 (575)
Q Consensus 218 AL 219 (575)
.=
T Consensus 321 Yd 322 (539)
T PF04184_consen 321 YD 322 (539)
T ss_pred hc
Confidence 63
No 186
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.20 E-value=0.0046 Score=63.89 Aligned_cols=129 Identities=19% Similarity=0.218 Sum_probs=95.8
Q ss_pred cCChHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHH
Q 038048 67 DKDPSRAVSLFWAAINAG-DRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARS 145 (575)
Q Consensus 67 ~kd~eeAi~lf~kAL~l~-p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~s 145 (575)
.+.+.-....+.+.++.+ |..+.....||.+-++.|+.+.|..++... +..-..
T Consensus 190 ~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~v-ek~~~k------------------------ 244 (366)
T KOG2796|consen 190 MKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDV-EKVTQK------------------------ 244 (366)
T ss_pred chhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHH-HHHHhh------------------------
Confidence 456666667777777766 344556677777777777777777664321 100000
Q ss_pred hchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 038048 146 QGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGN 224 (575)
Q Consensus 146 qg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~ 224 (575)
+.--.....+..|.+.+|.-+++|.+|...|.+.+..||.++. .+|-|.|++-.|+..+|++.++.++.+.|.
T Consensus 245 ------L~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 245 ------LDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred ------hhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 0000112337788999999999999999999999999999999 889999999999999999999999999986
Q ss_pred CC
Q 038048 225 RQ 226 (575)
Q Consensus 225 n~ 226 (575)
..
T Consensus 319 ~~ 320 (366)
T KOG2796|consen 319 HY 320 (366)
T ss_pred cc
Confidence 54
No 187
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.17 E-value=0.00065 Score=47.21 Aligned_cols=33 Identities=36% Similarity=0.459 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 038048 160 RILGNLAWAYMQQNNFEMAEQYYRKALSLGVDM 192 (575)
Q Consensus 160 ~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn 192 (575)
.+|+.+|.+|..+|++++|+.+|+++++++|+|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 477888899999999999999999999888854
No 188
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.11 E-value=0.055 Score=58.53 Aligned_cols=70 Identities=11% Similarity=0.035 Sum_probs=57.2
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------------------CCCCHH-HHHHHHHHHH
Q 038048 157 EKSRILGNLAWAYMQQNNFEMAEQYYRKALSL-------------------------------GVDMNK-QCNLAICLMH 204 (575)
Q Consensus 157 d~~~a~~nLG~aY~~qGryeEAe~~yrkALei-------------------------------dPdn~~-~~NLA~iy~~ 204 (575)
+++.+...++.=+.+.|++++|..+.+++|+. .|+++. +..||.+|.+
T Consensus 261 ~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k 340 (400)
T COG3071 261 NDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALK 340 (400)
T ss_pred cChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Confidence 34556667777788888888888777766653 477777 7899999999
Q ss_pred cCCHHHHHHHHHHHHHHcCCCC
Q 038048 205 MNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 205 qGr~eEAi~lLekALel~P~n~ 226 (575)
.+.|.+|..+|+.+++..|+..
T Consensus 341 ~~~w~kA~~~leaAl~~~~s~~ 362 (400)
T COG3071 341 NKLWGKASEALEAALKLRPSAS 362 (400)
T ss_pred hhHHHHHHHHHHHHHhcCCChh
Confidence 9999999999999999988653
No 189
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.05 E-value=0.01 Score=66.02 Aligned_cols=124 Identities=23% Similarity=0.203 Sum_probs=101.1
Q ss_pred cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHh
Q 038048 67 DKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQ 146 (575)
Q Consensus 67 ~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sq 146 (575)
..+.+.|..++....+.-|+..-.++..|.++...|+.++|++.+..+++.+.. +.+.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~-~~Ql--------------------- 303 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSE-WKQL--------------------- 303 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhh-HHhH---------------------
Confidence 456788999999999999998888899999999999999999997665432111 1000
Q ss_pred chhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHcCCH-------HHHHHHHHH
Q 038048 147 GKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK--QCNLAICLMHMNRV-------TEAKSLLQA 217 (575)
Q Consensus 147 g~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~--~~NLA~iy~~qGr~-------eEAi~lLek 217 (575)
..-.++.+|+++.-+++|++|..+|.+.++.+.-... .|-.|.+|...|+. ++|..+|.+
T Consensus 304 -----------~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~ 372 (468)
T PF10300_consen 304 -----------HHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRK 372 (468)
T ss_pred -----------HHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHH
Confidence 1227899999999999999999999999997776555 67889999999999 899999988
Q ss_pred HHHHcC
Q 038048 218 VKISAG 223 (575)
Q Consensus 218 ALel~P 223 (575)
+-....
T Consensus 373 vp~l~~ 378 (468)
T PF10300_consen 373 VPKLKQ 378 (468)
T ss_pred HHHHHh
Confidence 877654
No 190
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.02 E-value=0.014 Score=65.67 Aligned_cols=127 Identities=17% Similarity=0.016 Sum_probs=94.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHH
Q 038048 61 KHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKT 140 (575)
Q Consensus 61 ~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla 140 (575)
...+-..|++++|+.+..+||...|...+.++..|.+|...|++++|.+....+
T Consensus 201 Aqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~A-------------------------- 254 (517)
T PF12569_consen 201 AQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEA-------------------------- 254 (517)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH--------------------------
Confidence 344456789999999999999999999999999999999999999999873221
Q ss_pred HHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--------H--HHHHHHHHHcCCHHH
Q 038048 141 KMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK--------Q--CNLAICLMHMNRVTE 210 (575)
Q Consensus 141 ~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~--------~--~NLA~iy~~qGr~eE 210 (575)
-.++..+--+-...+-.+++.|+.++|+.....-..-+-+... | ..-|.+|..+|++..
T Consensus 255 -----------r~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ 323 (517)
T PF12569_consen 255 -----------RELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL 323 (517)
T ss_pred -----------HhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 1223333334445567788889999999888776554421111 2 246999999999999
Q ss_pred HHHHHHHHHHHcCC
Q 038048 211 AKSLLQAVKISAGN 224 (575)
Q Consensus 211 Ai~lLekALel~P~ 224 (575)
|+..|..+++..-+
T Consensus 324 ALk~~~~v~k~f~~ 337 (517)
T PF12569_consen 324 ALKRFHAVLKHFDD 337 (517)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988887543
No 191
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=96.98 E-value=0.0032 Score=73.97 Aligned_cols=120 Identities=10% Similarity=-0.043 Sum_probs=95.2
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHH
Q 038048 64 QLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMA 143 (575)
Q Consensus 64 ~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al 143 (575)
++..++.-.|+..|+.|++.+|++..++.+||.+|...|+|.-|++.+.+
T Consensus 572 yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~k------------------------------ 621 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTK------------------------------ 621 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhh------------------------------
Confidence 34456777888888888888888888888888888888888888877433
Q ss_pred HHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038048 144 RSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKI 220 (575)
Q Consensus 144 ~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALe 220 (575)
+..++|.+.-+.+..+.+...+|+|.+|+..+...+.....-.. ...||.++++.-.---+-.++.++..
T Consensus 622 -------As~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd 692 (1238)
T KOG1127|consen 622 -------ASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVD 692 (1238)
T ss_pred -------hHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhH
Confidence 35779999999999999999999999999999999988887777 88899999876544444444444444
No 192
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.97 E-value=0.0093 Score=65.04 Aligned_cols=87 Identities=17% Similarity=0.174 Sum_probs=75.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHH
Q 038048 60 AKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVK 139 (575)
Q Consensus 60 A~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nl 139 (575)
...+++..++..+|+.++.++|+..|.+...+...|..+++.++++.|+.+.+.
T Consensus 206 LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~-------------------------- 259 (395)
T PF09295_consen 206 LARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKK-------------------------- 259 (395)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH--------------------------
Confidence 344556677889999999999999999999999999999999999999988332
Q ss_pred HHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 038048 140 TKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYR 183 (575)
Q Consensus 140 a~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yr 183 (575)
++.+.|+.-..|+.|+.+|..+|+|++|+..+.
T Consensus 260 -----------av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 260 -----------AVELSPSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred -----------HHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 367789999999999999999999999997665
No 193
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.0062 Score=62.39 Aligned_cols=117 Identities=17% Similarity=0.071 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHH
Q 038048 89 SALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWA 168 (575)
Q Consensus 89 ~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~a 168 (575)
.++..-|+-++.+|+|.||+..|..+ +..+....- -..-|...=++++......+.|...+
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreA----i~~l~~L~l---------------kEkP~e~eW~eLdk~~tpLllNy~QC 239 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREA----IICLRNLQL---------------KEKPGEPEWLELDKMITPLLLNYCQC 239 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHH----HHHHHHHHh---------------ccCCCChHHHHHHHhhhHHHHhHHHH
Confidence 46677899999999999999986554 333333220 00011111234445556689999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 038048 169 YMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGN 224 (575)
Q Consensus 169 Y~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~ 224 (575)
++..|+|-++++.-..+|..+|+|.. ++..|.+....=+.+||.+-|.++|+++|.
T Consensus 240 ~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 240 LLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred HhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 99999999999999999999999999 999999999999999999999999999885
No 194
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.92 E-value=0.0015 Score=45.54 Aligned_cols=31 Identities=16% Similarity=0.091 Sum_probs=28.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048 195 QCNLAICLMHMNRVTEAKSLLQAVKISAGNR 225 (575)
Q Consensus 195 ~~NLA~iy~~qGr~eEAi~lLekALel~P~n 225 (575)
++++|.+|..+|++++|+..|+++++++|++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 7899999999999999999999999999963
No 195
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.91 E-value=0.0021 Score=44.32 Aligned_cols=31 Identities=13% Similarity=0.052 Sum_probs=28.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048 195 QCNLAICLMHMNRVTEAKSLLQAVKISAGNR 225 (575)
Q Consensus 195 ~~NLA~iy~~qGr~eEAi~lLekALel~P~n 225 (575)
++++|.+|..+|++++|+.+|++++.++|+|
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 7899999999999999999999999999975
No 196
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.049 Score=57.15 Aligned_cols=49 Identities=16% Similarity=0.046 Sum_probs=45.0
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Q 038048 63 IQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEAR 111 (575)
Q Consensus 63 l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~ 111 (575)
..+-.++..+|...|..++...|.+..+...||.+|...|+.++|..++
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL 191 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAIL 191 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHH
Confidence 3466789999999999999999999999999999999999999999884
No 197
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.82 E-value=0.002 Score=46.25 Aligned_cols=28 Identities=46% Similarity=0.730 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 038048 161 ILGNLAWAYMQQNNFEMAEQYYRKALSL 188 (575)
Q Consensus 161 a~~nLG~aY~~qGryeEAe~~yrkALei 188 (575)
++.+||.+|..+|+|++|+.+|+++|.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677888888888888888888886654
No 198
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.81 E-value=0.0029 Score=63.87 Aligned_cols=76 Identities=21% Similarity=0.218 Sum_probs=72.2
Q ss_pred HHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 151 QITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 151 aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
++.+.|+-+.+++.||.-+...|+|+.|...|.-.++++|.+.- ..|.|+.+.--||+.-|..-+.+..+.+|+|+
T Consensus 91 aLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 91 ALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDP 167 (297)
T ss_pred hhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCCh
Confidence 46789999999999999999999999999999999999999998 99999999999999999999999999999876
No 199
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.81 E-value=0.016 Score=67.68 Aligned_cols=124 Identities=13% Similarity=0.075 Sum_probs=101.7
Q ss_pred HHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHH
Q 038048 65 LIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMAR 144 (575)
Q Consensus 65 l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~ 144 (575)
+..+++.+|.+...+.++..|+...+..--|.++.++|+.+||..+....
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~------------------------------ 69 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEAL------------------------------ 69 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhh------------------------------
Confidence 34467899999999999999999998888899999999999999762110
Q ss_pred HhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Q 038048 145 SQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAG 223 (575)
Q Consensus 145 sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P 223 (575)
-...+++...+..|-.+|.++|++++|..+|++++..+|. .. ++.|=++|.+-+.|.+=.+.--+..+..|
T Consensus 70 -------~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~p 141 (932)
T KOG2053|consen 70 -------YGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFP 141 (932)
T ss_pred -------ccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 1234566778889999999999999999999999999999 66 88999999999998876655555555666
Q ss_pred CCC
Q 038048 224 NRQ 226 (575)
Q Consensus 224 ~n~ 226 (575)
+++
T Consensus 142 k~~ 144 (932)
T KOG2053|consen 142 KRA 144 (932)
T ss_pred ccc
Confidence 653
No 200
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.80 E-value=0.048 Score=61.54 Aligned_cols=150 Identities=15% Similarity=0.082 Sum_probs=107.4
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHH-HHHHHHHHHHHhhHHHHHHHhHHH
Q 038048 62 HIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIE-EEIELLQNKLKNIEEGIAFAGVKT 140 (575)
Q Consensus 62 ~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLe-eAi~lL~~~L~l~~~a~a~~~nla 140 (575)
+.+..++++++|+.-..+.+...|+...+.+---.++.++++|++|+........ .....+ ++.+.+
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~------------~fEKAY 87 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSF------------FFEKAY 87 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchh------------hHHHHH
Confidence 4556678999999999999999999999988888999999999999966222110 000000 112222
Q ss_pred HHHHHhch----hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------------------
Q 038048 141 KMARSQGK----KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLG--------------------------- 189 (575)
Q Consensus 141 ~al~sqg~----k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeid--------------------------- 189 (575)
..|+.... +..-.+++.+..++..-|.+++++|+|++|...|+..++-+
T Consensus 88 c~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v 167 (652)
T KOG2376|consen 88 CEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSV 167 (652)
T ss_pred HHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhc
Confidence 22221111 11123467777788888999999999999999999874422
Q ss_pred ---CC-CHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Q 038048 190 ---VD-MNK-QCNLAICLMHMNRVTEAKSLLQAVKISAG 223 (575)
Q Consensus 190 ---Pd-n~~-~~NLA~iy~~qGr~eEAi~lLekALel~P 223 (575)
|+ ... .+|.|.+++..|+|.+|+++|++++.+..
T Consensus 168 ~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~ 206 (652)
T KOG2376|consen 168 PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICR 206 (652)
T ss_pred cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 33 334 78999999999999999999999966543
No 201
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.63 E-value=0.46 Score=49.49 Aligned_cols=69 Identities=22% Similarity=0.275 Sum_probs=55.6
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHH-HHHHHHHHHcCCCC
Q 038048 158 KSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAK-SLLQAVKISAGNRQ 226 (575)
Q Consensus 158 ~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi-~lLekALel~P~n~ 226 (575)
....++.++.+.+.+|+|++|+..++.||.-++++++ ..|+-.+-..+|.-.++. .++.+....+|+..
T Consensus 206 T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 206 TPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred ChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 3447777889999999999999999999999999998 899999888888887765 45566666667654
No 202
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.54 E-value=0.011 Score=63.39 Aligned_cols=132 Identities=13% Similarity=-0.021 Sum_probs=91.3
Q ss_pred HHcCChHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhH
Q 038048 65 LIDKDPSRAVSLFWAAINAGDRV------DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGV 138 (575)
Q Consensus 65 l~~kd~eeAi~lf~kAL~l~p~~------~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~n 138 (575)
+-.+.+++++++|++|++..-++ ..++..||.+|.+..++++|+-+..++++....+--..
T Consensus 133 lgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d------------- 199 (518)
T KOG1941|consen 133 LGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKD------------- 199 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCc-------------
Confidence 44456778888888887653322 13567788888888888888877555433211100000
Q ss_pred HHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCH---H-HHHHHHHHHHcCCHHHH
Q 038048 139 KTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLG---VDMN---K-QCNLAICLMHMNRVTEA 211 (575)
Q Consensus 139 la~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeid---Pdn~---~-~~NLA~iy~~qGr~eEA 211 (575)
+.. .+...+++.|+.+|..+|+..+|.++-++|.++. -|-+ . +.-+|.||...|+.+.|
T Consensus 200 ~~~--------------kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~a 265 (518)
T KOG1941|consen 200 WSL--------------KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERA 265 (518)
T ss_pred hhH--------------HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHH
Confidence 000 0112378999999999999999999999998874 2222 2 66899999999999999
Q ss_pred HHHHHHHHHHcC
Q 038048 212 KSLLQAVKISAG 223 (575)
Q Consensus 212 i~lLekALel~P 223 (575)
..-|++|.....
T Consensus 266 f~rYe~Am~~m~ 277 (518)
T KOG1941|consen 266 FRRYEQAMGTMA 277 (518)
T ss_pred HHHHHHHHHHHh
Confidence 999999988754
No 203
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.49 E-value=0.0047 Score=42.15 Aligned_cols=32 Identities=22% Similarity=0.378 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 038048 161 ILGNLAWAYMQQNNFEMAEQYYRKALSLGVDM 192 (575)
Q Consensus 161 a~~nLG~aY~~qGryeEAe~~yrkALeidPdn 192 (575)
+++++|.+|..+|++++|+..|+++++..|+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 66788888888888888888888888888763
No 204
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.41 E-value=0.0093 Score=63.80 Aligned_cols=126 Identities=20% Similarity=0.105 Sum_probs=91.0
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHH
Q 038048 64 QLIDKDPSRAVSLFWAAINAGDRVD-SALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKM 142 (575)
Q Consensus 64 ~l~~kd~eeAi~lf~kAL~l~p~~~-~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~a 142 (575)
.+...|+..|+.+++-.+..+.... ....-+|.++..+|+|++|+..|....
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~--------------------------- 84 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLM--------------------------- 84 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHh---------------------------
Confidence 4567799999999998887765443 466678999999999999998753311
Q ss_pred HHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH--------------HHhC------------CCCHH-H
Q 038048 143 ARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKA--------------LSLG------------VDMNK-Q 195 (575)
Q Consensus 143 l~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkA--------------Leid------------Pdn~~-~ 195 (575)
.-+.-+...+.||+.+++-+|.|.+|...-.+| .+++ .|..+ .
T Consensus 85 ----------~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~Edq 154 (557)
T KOG3785|consen 85 ----------NKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQ 154 (557)
T ss_pred ----------ccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHH
Confidence 112334457788888888888888887765543 1111 12223 4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 196 CNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 196 ~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
..||.+....-.|.||+..|.++|..+|+..
T Consensus 155 LSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~ 185 (557)
T KOG3785|consen 155 LSLASVHYMRMHYQEAIDVYKRVLQDNPEYI 185 (557)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhcChhhh
Confidence 5778887888889999999999999888754
No 205
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.35 E-value=0.019 Score=58.03 Aligned_cols=121 Identities=14% Similarity=0.035 Sum_probs=94.9
Q ss_pred ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch
Q 038048 69 DPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK 148 (575)
Q Consensus 69 d~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~ 148 (575)
=..-|.--|.+++.+.|+.+++++.||.-+...|+|+.|.+.+..
T Consensus 80 L~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds----------------------------------- 124 (297)
T COG4785 80 LRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDS----------------------------------- 124 (297)
T ss_pred HHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhh-----------------------------------
Confidence 345677778899999999999999999999999999999987432
Q ss_pred hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHH-HHHHHHHHcCCCC
Q 038048 149 KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKS-LLQAVKISAGNRQ 226 (575)
Q Consensus 149 k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~-lLekALel~P~n~ 226 (575)
.++++|...-++.|.|..+.--|+|.-|..-+.+-.+-+|+++- ..-|=..-.+. ++.+|.. +.+++...+.+-|
T Consensus 125 --~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~-dP~~A~tnL~qR~~~~d~e~W 201 (297)
T COG4785 125 --VLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKL-DPKQAKTNLKQRAEKSDKEQW 201 (297)
T ss_pred --HhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhC-CHHHHHHHHHHHHHhccHhhh
Confidence 25679999999999999999999999999999999999999996 44333333333 4555554 4456666555555
Q ss_pred C
Q 038048 227 M 227 (575)
Q Consensus 227 ~ 227 (575)
+
T Consensus 202 G 202 (297)
T COG4785 202 G 202 (297)
T ss_pred h
Confidence 3
No 206
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.31 E-value=0.0051 Score=67.66 Aligned_cols=95 Identities=18% Similarity=0.092 Sum_probs=69.7
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHH
Q 038048 63 IQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKM 142 (575)
Q Consensus 63 l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~a 142 (575)
..+-.++++.|+.+|-+||+++|+.+..+-+-+.++.+.+.|-.|+.-..
T Consensus 13 ~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~------------------------------ 62 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDAL------------------------------ 62 (476)
T ss_pred hhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHH------------------------------
Confidence 34556778888888888888888777666677777777777777775422
Q ss_pred HHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048 143 ARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK 194 (575)
Q Consensus 143 l~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~ 194 (575)
++++++|....+|+.-|.+.+.++++.+|...|+....+.|+.+.
T Consensus 63 -------kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~ 107 (476)
T KOG0376|consen 63 -------KAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPD 107 (476)
T ss_pred -------hhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHH
Confidence 235566777777777778888888888888888888888887776
No 207
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.29 E-value=0.0059 Score=39.04 Aligned_cols=32 Identities=38% Similarity=0.569 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 038048 161 ILGNLAWAYMQQNNFEMAEQYYRKALSLGVDM 192 (575)
Q Consensus 161 a~~nLG~aY~~qGryeEAe~~yrkALeidPdn 192 (575)
+++++|.+|..+|++++|+.+|+++++++|++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 67788888888888888888888888887753
No 208
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.25 E-value=0.0064 Score=66.94 Aligned_cols=91 Identities=21% Similarity=0.194 Sum_probs=79.7
Q ss_pred HHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCCh
Q 038048 151 QITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMDT 229 (575)
Q Consensus 151 aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~~~ 229 (575)
+|.++|+.+..+.+.+.++.+.++|..|+.-+.+|++++|.... ++.-|.+.+..+++.+|...|++...+.|++.
T Consensus 30 aI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~--- 106 (476)
T KOG0376|consen 30 AIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDP--- 106 (476)
T ss_pred HHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcH---
Confidence 46789999999999999999999999999999999999999999 99999999999999999999999999999865
Q ss_pred hHHHHHHHHHHHHHH
Q 038048 230 SYSRSFERAIQMLTE 244 (575)
Q Consensus 230 ~~l~slerA~elL~e 244 (575)
.+.+.+.....+..+
T Consensus 107 ~~~r~~~Ec~~~vs~ 121 (476)
T KOG0376|consen 107 DATRKIDECNKIVSE 121 (476)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334555555555554
No 209
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.25 E-value=0.11 Score=51.76 Aligned_cols=70 Identities=16% Similarity=0.115 Sum_probs=61.6
Q ss_pred cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 038048 155 EQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK---QCNLAICLMHMNRVTEAKSLLQAVKISAGN 224 (575)
Q Consensus 155 ~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~---~~NLA~iy~~qGr~eEAi~lLekALel~P~ 224 (575)
--++...+..|+.+.+..+++.+|...+++..+.+|..-. +..+|.+|..+|++++|+..|+.++...|.
T Consensus 120 fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg 192 (251)
T COG4700 120 FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG 192 (251)
T ss_pred cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC
Confidence 3466778888999999999999999999999999987664 888999999999999999999999998874
No 210
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.19 E-value=0.05 Score=55.95 Aligned_cols=101 Identities=14% Similarity=0.010 Sum_probs=79.9
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCChh-
Q 038048 156 QEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK----QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMDTS- 230 (575)
Q Consensus 156 Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~----~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~~~~- 230 (575)
..++..+++-|...++.|+|++|+..|+.+...+|..+- ++.|+.++.+.+++++|+..+++.+.+.|.++..+-
T Consensus 31 ~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~ 110 (254)
T COG4105 31 NLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYA 110 (254)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHH
Confidence 456779999999999999999999999999999998773 889999999999999999999999999998875431
Q ss_pred -HHHH-------------HHHHHHHHHHhccccccCcccc
Q 038048 231 -YSRS-------------FERAIQMLTELESPSVLKLTEL 256 (575)
Q Consensus 231 -~l~s-------------lerA~elL~ele~al~~~p~~~ 256 (575)
+++. ...+.+.+..+...+...|+..
T Consensus 111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~ 150 (254)
T COG4105 111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSR 150 (254)
T ss_pred HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCc
Confidence 1211 2335555556665555555544
No 211
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.14 E-value=0.012 Score=60.06 Aligned_cols=89 Identities=18% Similarity=0.132 Sum_probs=77.1
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHH
Q 038048 64 QLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMA 143 (575)
Q Consensus 64 ~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al 143 (575)
.+..+.++.|+..|-+||.++|..+..+.|-|..|++..+++.+..--.
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcr------------------------------- 68 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCR------------------------------- 68 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHH-------------------------------
Confidence 3456678999999999999999999999999999999999998886522
Q ss_pred HHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 038048 144 RSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLG 189 (575)
Q Consensus 144 ~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeid 189 (575)
.++.+.|+...+++.||..++....|++|+..+++|+.+.
T Consensus 69 ------ralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 69 ------RALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLL 108 (284)
T ss_pred ------HHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 3456777878899999999999999999999999997653
No 212
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.11 E-value=0.1 Score=51.87 Aligned_cols=121 Identities=13% Similarity=0.043 Sum_probs=78.3
Q ss_pred cCChHHHHHHHHHHHHcCCCcHH---HHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHH
Q 038048 67 DKDPSRAVSLFWAAINAGDRVDS---ALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMA 143 (575)
Q Consensus 67 ~kd~eeAi~lf~kAL~l~p~~~~---Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al 143 (575)
.+.+ +.+...++.+..++.... +-..+|..+.+.|++++|+......+....+ . ++.
T Consensus 66 ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~D---e-------------~lk--- 125 (207)
T COG2976 66 AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKD---E-------------NLK--- 125 (207)
T ss_pred cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchh---H-------------HHH---
Confidence 3444 444444444555544432 3456788899999999998774332211000 0 000
Q ss_pred HHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038048 144 RSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK--QCNLAICLMHMNRVTEAKSLLQAVKIS 221 (575)
Q Consensus 144 ~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~--~~NLA~iy~~qGr~eEAi~lLekALel 221 (575)
.-+-.+||.+..++|++++|+..+.... +++... ..-.|.+|+..|+-++|+..|+++++.
T Consensus 126 ---------------~l~~lRLArvq~q~~k~D~AL~~L~t~~--~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 126 ---------------ALAALRLARVQLQQKKADAALKTLDTIK--EESWAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred ---------------HHHHHHHHHHHHHhhhHHHHHHHHhccc--cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 1155789999999999999998776532 233333 445799999999999999999999998
Q ss_pred cCC
Q 038048 222 AGN 224 (575)
Q Consensus 222 ~P~ 224 (575)
.++
T Consensus 189 ~~s 191 (207)
T COG2976 189 DAS 191 (207)
T ss_pred cCC
Confidence 744
No 213
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.05 E-value=0.011 Score=44.03 Aligned_cols=32 Identities=19% Similarity=0.133 Sum_probs=30.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 195 QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 195 ~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
++.||.+|..+|++++|+.+|+++++.+|++.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~ 35 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDP 35 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 67899999999999999999999999999876
No 214
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.01 E-value=0.0055 Score=65.13 Aligned_cols=72 Identities=13% Similarity=-0.023 Sum_probs=55.0
Q ss_pred HhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Q 038048 152 ITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAG 223 (575)
Q Consensus 152 L~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P 223 (575)
|.++|....+|-..|.+++++++...|+.-|..|++|+||... +---|.+...+|++++|..+|..+++++-
T Consensus 141 i~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 141 IELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDY 213 (377)
T ss_pred cccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhccc
Confidence 4567777777777788888888888888888888888888777 66667777777888888888887777643
No 215
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.96 E-value=0.014 Score=40.30 Aligned_cols=30 Identities=13% Similarity=0.055 Sum_probs=28.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 038048 195 QCNLAICLMHMNRVTEAKSLLQAVKISAGN 224 (575)
Q Consensus 195 ~~NLA~iy~~qGr~eEAi~lLekALel~P~ 224 (575)
++.+|.+|..+|++++|+.+|+++++++|+
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 678999999999999999999999999985
No 216
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.92 E-value=0.016 Score=41.39 Aligned_cols=28 Identities=39% Similarity=0.488 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 038048 161 ILGNLAWAYMQQNNFEMAEQYYRKALSL 188 (575)
Q Consensus 161 a~~nLG~aY~~qGryeEAe~~yrkALei 188 (575)
++++||.+|..+|++++|+.++++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 5666777777777777777777776665
No 217
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.89 E-value=0.1 Score=48.42 Aligned_cols=100 Identities=17% Similarity=0.134 Sum_probs=65.9
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCc------------HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhh
Q 038048 62 HIQLIDKDPSRAVSLFWAAINAGDRV------------DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNI 129 (575)
Q Consensus 62 ~l~l~~kd~eeAi~lf~kAL~l~p~~------------~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~ 129 (575)
..++.++-+++|..-+++|+...-.. ...+..|+.++..+|+|++++..-.
T Consensus 17 e~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~----------------- 79 (144)
T PF12968_consen 17 ERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSAD----------------- 79 (144)
T ss_dssp HHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHH-----------------
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHH-----------------
Confidence 44578899999999999998753221 2357889999999999999997621
Q ss_pred HHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038048 130 EEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALS 187 (575)
Q Consensus 130 ~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALe 187 (575)
.++.|+++.+.+....|+ -.+.+.++.|.++..+|+.++|+..|+.+-+
T Consensus 80 -~aL~YFNRRGEL~qdeGk--------lWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 80 -RALRYFNRRGELHQDEGK--------LWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp -HHHHHHHHH--TTSTHHH--------HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred -HHHHHHhhccccccccch--------hHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 122334444333222221 1133678888899999999999999988765
No 218
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.87 E-value=0.34 Score=52.83 Aligned_cols=198 Identities=15% Similarity=0.146 Sum_probs=107.4
Q ss_pred cCCCCCcHHHHHH--HHHHHcCChHHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHCCCHHHHHHHHhcCHHHHH------
Q 038048 49 KVPSGDSPYVRAK--HIQLIDKDPSRAVSLFWAAINAGDRVD-SALKDMAVVMKQLDRSDEAIEARSGRIEEEI------ 119 (575)
Q Consensus 49 ~~ps~d~~yarA~--~l~l~~kd~eeAi~lf~kAL~l~p~~~-~Al~nLA~iy~qqGrydEAie~~~gaLeeAi------ 119 (575)
.+.+...+++... ...+++|+++.|..-|+..+. +|..- -.+.+|=+.-..+|..+.|+.+-..+.+.+.
T Consensus 113 llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~ 191 (531)
T COG3898 113 LLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAA 191 (531)
T ss_pred hhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHH
Confidence 4455566666533 445788999999998876654 33321 1234444455667888888877433333322
Q ss_pred -HHHHHHHH--hhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHH---H--HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 038048 120 -ELLQNKLK--NIEEGIAFAGVKTKMARSQGKKIQITVEQEKSR---I--LGNLAWAYMQQNNFEMAEQYYRKALSLGVD 191 (575)
Q Consensus 120 -~lL~~~L~--l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~---a--~~nLG~aY~~qGryeEAe~~yrkALeidPd 191 (575)
.+++.... ....++.+ .+.. +....+.++-.+ + +.--+.... .-+...|...-.+++++.|+
T Consensus 192 ~AtLe~r~~~gdWd~AlkL----vd~~-----~~~~vie~~~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~pd 261 (531)
T COG3898 192 RATLEARCAAGDWDGALKL----VDAQ-----RAAKVIEKDVAERSRAVLLTAKAMSLL-DADPASARDDALEANKLAPD 261 (531)
T ss_pred HHHHHHHHhcCChHHHHHH----HHHH-----HHHHhhchhhHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcCCc
Confidence 22222221 00000000 0000 001111222111 1 111112222 23477888888999999999
Q ss_pred CHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCC---hhHHHHHHHHHHHHHHhccccccCcccccc
Q 038048 192 MNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMD---TSYSRSFERAIQMLTELESPSVLKLTELEV 258 (575)
Q Consensus 192 n~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~~---~~~l~slerA~elL~ele~al~~~p~~~e~ 258 (575)
... ..--+.+|.+.|+..++-.+++.+.+..|. +.. ..+..+.+.+..-++.+.....++|+..+.
T Consensus 262 lvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes 331 (531)
T COG3898 262 LVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PDIALLYVRARSGDTALDRLKRAKKLESLKPNNAES 331 (531)
T ss_pred cchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHHHHHHHHhcCCCcHHHHHHHHHHHHhcCccchHH
Confidence 988 777888999999999999999999988773 210 112233344555555555555566655543
No 219
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.72 E-value=0.25 Score=50.99 Aligned_cols=135 Identities=16% Similarity=0.161 Sum_probs=81.0
Q ss_pred CcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHH
Q 038048 54 DSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVD------SALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLK 127 (575)
Q Consensus 54 d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~------~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~ 127 (575)
-..|.+|...+...+++++|...+.+|++...++. .++...|.++.+...+.|+..++.
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~e--------------- 95 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYE--------------- 95 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---------------
Confidence 34566777777888888888888888875544331 234444455555555555555432
Q ss_pred hhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHH
Q 038048 128 NIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-------QCNLAI 200 (575)
Q Consensus 128 l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-------~~NLA~ 200 (575)
+....|.+.| .|+.+..-..-+-=..+.-+.++|+++|++++.+-..... +-..++
T Consensus 96 ----------KAs~lY~E~G-------spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr 158 (308)
T KOG1585|consen 96 ----------KASELYVECG-------SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSR 158 (308)
T ss_pred ----------HHHHHHHHhC-------CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 2233333333 2333332223333345666888888999888887543321 235688
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 038048 201 CLMHMNRVTEAKSLLQAVKI 220 (575)
Q Consensus 201 iy~~qGr~eEAi~lLekALe 220 (575)
+|....+++||-..+.+-..
T Consensus 159 ~lVrl~kf~Eaa~a~lKe~~ 178 (308)
T KOG1585|consen 159 VLVRLEKFTEAATAFLKEGV 178 (308)
T ss_pred HhhhhHHhhHHHHHHHHhhh
Confidence 89999999998887776544
No 220
>PRK10941 hypothetical protein; Provisional
Probab=95.59 E-value=0.11 Score=54.01 Aligned_cols=66 Identities=15% Similarity=0.088 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 161 ILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 161 a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
.+.||-.+|.+.++++.|+.+.+.+|.+.|+++. +-..|.+|.++|.+..|..-|+..++..|+++
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp 249 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDP 249 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCch
Confidence 7788899999999999999999999999999999 89999999999999999999999999999876
No 221
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=95.58 E-value=0.3 Score=57.22 Aligned_cols=155 Identities=12% Similarity=0.070 Sum_probs=91.5
Q ss_pred CCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHH---------------H---
Q 038048 50 VPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEA---------------R--- 111 (575)
Q Consensus 50 ~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~---------------~--- 111 (575)
..+++..-++...+++.-|..++|+.+|++.-.- -.|-.+|..+|.+++|.++ |
T Consensus 796 ~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~--------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~ 867 (1416)
T KOG3617|consen 796 QQNGEEDEAKVAVLAIELGMLEEALILYRQCKRY--------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKY 867 (1416)
T ss_pred HhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHH--------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHH
Confidence 3445555667667777788899999999876331 2345678888999999887 1
Q ss_pred ---hcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch--hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038048 112 ---SGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK--KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKAL 186 (575)
Q Consensus 112 ---~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~--k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkAL 186 (575)
.+.++.+++.+++.-. -..+...++.+... +..+. .-.+...|---|.-+...|+.+.|+.+|..|-
T Consensus 868 Lear~Di~~AleyyEK~~~-------hafev~rmL~e~p~~~e~Yv~-~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~ 939 (1416)
T KOG3617|consen 868 LEARRDIEAALEYYEKAGV-------HAFEVFRMLKEYPKQIEQYVR-RKRDESLYSWWGQYLESVGEMDAALSFYSSAK 939 (1416)
T ss_pred HHhhccHHHHHHHHHhcCC-------hHHHHHHHHHhChHHHHHHHH-hccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 1111111221111100 00011111111111 01111 12233566677788888888888888888664
Q ss_pred Hh---------------------CCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038048 187 SL---------------------GVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKI 220 (575)
Q Consensus 187 ei---------------------dPdn~~-~~NLA~iy~~qGr~eEAi~lLekALe 220 (575)
.. .-.+.. -|.||..|-..|++.+|+..|-+|-.
T Consensus 940 D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 940 DYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred hhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 42 233444 67999999999999999999987644
No 222
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.36 E-value=0.31 Score=50.30 Aligned_cols=103 Identities=14% Similarity=0.049 Sum_probs=70.4
Q ss_pred HHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHH
Q 038048 92 KDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQ 171 (575)
Q Consensus 92 ~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~ 171 (575)
..-+..|...++|++|..+..++.+ -++.. ..+... +.+|-..|.+..+
T Consensus 35 ekAAvafRnAk~feKakdcLlkA~~----~yEnn--------rslfhA-------------------AKayEqaamLake 83 (308)
T KOG1585|consen 35 EKAAVAFRNAKKFEKAKDCLLKASK----GYENN--------RSLFHA-------------------AKAYEQAAMLAKE 83 (308)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHH----HHHhc--------ccHHHH-------------------HHHHHHHHHHHHH
Confidence 3347889999999999987544322 11111 000000 1255566777888
Q ss_pred cCCHHHHHHHHHHHHHhC-----CCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048 172 QNNFEMAEQYYRKALSLG-----VDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNR 225 (575)
Q Consensus 172 qGryeEAe~~yrkALeid-----Pdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n 225 (575)
+..+.|++.+|++|..+. |+... ...-|-=..+.-++++|+++|++++.+-..+
T Consensus 84 ~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~ 143 (308)
T KOG1585|consen 84 LSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEED 143 (308)
T ss_pred HHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc
Confidence 888999999999998875 55555 5555666788899999999999999876543
No 223
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=0.12 Score=55.20 Aligned_cols=100 Identities=19% Similarity=0.151 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCc-HHHHHHHHHH
Q 038048 90 ALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEK-SRILGNLAWA 168 (575)
Q Consensus 90 Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~-~~a~~nLG~a 168 (575)
-+..-|+-|++..+|..|+..|...+.. ---+|+. +..|.|.+.+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~----------------------------------kc~D~dlnavLY~NRAAa 128 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKK----------------------------------KCADPDLNAVLYTNRAAA 128 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhh----------------------------------cCCCccHHHHHHhhHHHH
Confidence 3455699999999999999987664321 0113332 3488999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Q 038048 169 YMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAG 223 (575)
Q Consensus 169 Y~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P 223 (575)
.+.+|+|..|+.-..+|+.++|.+.. ++.=|.|+..+.++++|..+++..+.++-
T Consensus 129 ~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 129 QLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 99999999999999999999999999 99999999999999999999998877653
No 224
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.29 E-value=0.47 Score=48.73 Aligned_cols=65 Identities=17% Similarity=0.135 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048 161 ILGNLAWAYMQQ-NNFEMAEQYYRKALSLGVDMNK-------QCNLAICLMHMNRVTEAKSLLQAVKISAGNR 225 (575)
Q Consensus 161 a~~nLG~aY~~q-GryeEAe~~yrkALeidPdn~~-------~~NLA~iy~~qGr~eEAi~lLekALel~P~n 225 (575)
.+..+|.+|..- .++++|+.+|++|-+..-.... ++..|..-...|+|.+|+.+|+++....-++
T Consensus 115 ~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 115 HHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred hhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 556788888876 9999999999999987654332 2334566678999999999999998866554
No 225
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.26 E-value=0.67 Score=50.46 Aligned_cols=64 Identities=25% Similarity=0.334 Sum_probs=47.4
Q ss_pred cCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038048 155 EQEKSRILGNLAWAYMQQ---------NNFEMAEQYYRKALSLGVDMNKQCNLAICLMHMNRVTEAKSLLQAV 218 (575)
Q Consensus 155 ~Pd~~~a~~nLG~aY~~q---------GryeEAe~~yrkALeidPdn~~~~NLA~iy~~qGr~eEAi~lLekA 218 (575)
.+.+++++..+|.+|.++ ...++|+..|+++.+++|+...-.|++.++.-.|.-.+...-++++
T Consensus 213 ~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i 285 (374)
T PF13281_consen 213 ENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKI 285 (374)
T ss_pred CCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHH
Confidence 556677888888776543 3578999999999999987766888888888888765555444443
No 226
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.18 E-value=0.055 Score=58.24 Aligned_cols=62 Identities=19% Similarity=0.166 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------H-HHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 038048 161 ILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMN----------K-QCNLAICLMHMNRVTEAKSLLQAVKISA 222 (575)
Q Consensus 161 a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~----------~-~~NLA~iy~~qGr~eEAi~lLekALel~ 222 (575)
++..||.+|..+.++++|..+..+|+++-.... . .+.|+.+|..+|+..+|.++.+++.++.
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla 236 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA 236 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 889999999999999999999999999854322 1 4689999999999999999999998864
No 227
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.18 E-value=0.28 Score=48.94 Aligned_cols=93 Identities=15% Similarity=0.065 Sum_probs=69.7
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCC-cH--HHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHH
Q 038048 63 IQLIDKDPSRAVSLFWAAINAGDR-VD--SALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVK 139 (575)
Q Consensus 63 l~l~~kd~eeAi~lf~kAL~l~p~-~~--~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nl 139 (575)
.+.-.+++++|+..++.++....+ +. -+-..||.+..++|++|+|+......-
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~------------------------ 153 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIK------------------------ 153 (207)
T ss_pred HHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc------------------------
Confidence 345678999999999998854322 22 256789999999999999998843321
Q ss_pred HHHHHHhchhhHHhhcCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048 140 TKMARSQGKKIQITVEQEKS-RILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK 194 (575)
Q Consensus 140 a~al~sqg~k~aL~L~Pd~~-~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~ 194 (575)
++... ......|+++..+|+-++|...|.+|++.+++...
T Consensus 154 ---------------~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~~ 194 (207)
T COG2976 154 ---------------EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPAA 194 (207)
T ss_pred ---------------cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChHH
Confidence 11112 24456799999999999999999999999877664
No 228
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.16 E-value=0.95 Score=50.54 Aligned_cols=161 Identities=13% Similarity=0.057 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHH--
Q 038048 56 PYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGI-- 133 (575)
Q Consensus 56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~-- 133 (575)
..++-+.....+++...|...|++||..+-.+...+...+.+-++.....-|..+..+++. ++-..-.+.+.-.
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt----~lPRVdqlWyKY~ym 150 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVT----ILPRVDQLWYKYIYM 150 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHH----hcchHHHHHHHHHHH
Confidence 3344444445678899999999999999988888888889988888888888877433322 2221111111000
Q ss_pred -HHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHH
Q 038048 134 -AFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQCNLAICLMHMNRVTEAK 212 (575)
Q Consensus 134 -a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~~~NLA~iy~~qGr~eEAi 212 (575)
..++|..-+..-. ..=+...|+ ..+|+..-..-++.+..+.|..+|++-+-.+|+...++..|..-.+-|+..-|.
T Consensus 151 EE~LgNi~gaRqif--erW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 151 EEMLGNIAGARQIF--ERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HHHhcccHHHHHHH--HHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHH
Confidence 1111111111100 011222332 234544445555555555566666665555555554555555555555555555
Q ss_pred HHHHHHHHHcC
Q 038048 213 SLLQAVKISAG 223 (575)
Q Consensus 213 ~lLekALel~P 223 (575)
..|++|++.-.
T Consensus 228 ~VyerAie~~~ 238 (677)
T KOG1915|consen 228 SVYERAIEFLG 238 (677)
T ss_pred HHHHHHHHHhh
Confidence 55555555443
No 229
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.15 E-value=0.18 Score=52.57 Aligned_cols=123 Identities=14% Similarity=0.075 Sum_probs=94.2
Q ss_pred hhh-HhhcCCCCCcHHHH-HHHHHHHcCChHHHHHHHHHHHHc----C--CCcHHHHHHHHHHHHHCCCHHHHHHHHhcC
Q 038048 43 IFH-VIHKVPSGDSPYVR-AKHIQLIDKDPSRAVSLFWAAINA----G--DRVDSALKDMAVVMKQLDRSDEAIEARSGR 114 (575)
Q Consensus 43 ~y~-~~~~~ps~d~~yar-A~~l~l~~kd~eeAi~lf~kAL~l----~--p~~~~Al~nLA~iy~qqGrydEAie~~~ga 114 (575)
.|+ ++.+.|..+..+.. .++++..-||.+.|..+|+.+-+. + ........+++.+|.-+++|.+|...+..
T Consensus 199 ~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~- 277 (366)
T KOG2796|consen 199 AYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTE- 277 (366)
T ss_pred HHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhh-
Confidence 344 45566677777765 678888999999999999954322 2 22234677889999999999888876432
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048 115 IEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK 194 (575)
Q Consensus 115 LeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~ 194 (575)
.+..+|.++.+.+|-|.+++-.|+..+|++..+.++.+.|....
T Consensus 278 ------------------------------------i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l 321 (366)
T KOG2796|consen 278 ------------------------------------ILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYL 321 (366)
T ss_pred ------------------------------------ccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccch
Confidence 24568888889999999999999999999999999999997663
Q ss_pred ----HHHHHHHH
Q 038048 195 ----QCNLAICL 202 (575)
Q Consensus 195 ----~~NLA~iy 202 (575)
.+||-.+|
T Consensus 322 ~es~~~nL~tmy 333 (366)
T KOG2796|consen 322 HESVLFNLTTMY 333 (366)
T ss_pred hhhHHHHHHHHH
Confidence 56776554
No 230
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.15 E-value=0.011 Score=62.84 Aligned_cols=71 Identities=14% Similarity=0.148 Sum_probs=41.7
Q ss_pred hHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038048 150 IQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQCNLAICLMHMNRVTEAKSLLQAVKI 220 (575)
Q Consensus 150 ~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~~~NLA~iy~~qGr~eEAi~lLekALe 220 (575)
+++.++|+...-|-..|.+...+|++++|..+++.|.+++=+-..-.-|-.+.-..+..++-...+++..+
T Consensus 173 ~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~dE~~~a~lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 173 FAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYDEANSATLKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred hhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhccccHHHHHHHHHhccchhhhhhchhHHHHHHH
Confidence 35666777777777777777777777777777777776654433322333444444444444444444444
No 231
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.07 E-value=0.034 Score=37.80 Aligned_cols=30 Identities=20% Similarity=0.223 Sum_probs=28.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 038048 195 QCNLAICLMHMNRVTEAKSLLQAVKISAGN 224 (575)
Q Consensus 195 ~~NLA~iy~~qGr~eEAi~lLekALel~P~ 224 (575)
++++|.+|..+|++++|+.+|+++++..|+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 678999999999999999999999999986
No 232
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.06 E-value=0.043 Score=39.28 Aligned_cols=29 Identities=14% Similarity=-0.015 Sum_probs=24.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Q 038048 195 QCNLAICLMHMNRVTEAKSLLQAVKISAG 223 (575)
Q Consensus 195 ~~NLA~iy~~qGr~eEAi~lLekALel~P 223 (575)
+.+||.+|..+|++++|+.+|+++|.+..
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 46899999999999999999999776643
No 233
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.01 E-value=0.081 Score=58.75 Aligned_cols=131 Identities=17% Similarity=0.081 Sum_probs=93.3
Q ss_pred HHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcC-HHHHHHHHHHHHHhhHHHHHHHhHHHHHH
Q 038048 65 LIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGR-IEEEIELLQNKLKNIEEGIAFAGVKTKMA 143 (575)
Q Consensus 65 l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~ga-LeeAi~lL~~~L~l~~~a~a~~~nla~al 143 (575)
+...+...+..--..++....+.+.++.-.+..++-.|++..|.+..... +.
T Consensus 217 lq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~--------------------------- 269 (696)
T KOG2471|consen 217 LQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIH--------------------------- 269 (696)
T ss_pred HHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccc---------------------------
Confidence 33444555555555666666677778888889999999999999873211 00
Q ss_pred HHhchhhHHhhcCCcHH--HHHHHHHHHHHcCCHHHHHHHHHHHHH---------hCC---------CCHH-HHHHHHHH
Q 038048 144 RSQGKKIQITVEQEKSR--ILGNLAWAYMQQNNFEMAEQYYRKALS---------LGV---------DMNK-QCNLAICL 202 (575)
Q Consensus 144 ~sqg~k~aL~L~Pd~~~--a~~nLG~aY~~qGryeEAe~~yrkALe---------idP---------dn~~-~~NLA~iy 202 (575)
.+.| -.+.|.-.. .++|||.+++++|.|.-+..+|.+||+ +.| .... .||.|..|
T Consensus 270 ~~~g----~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~ 345 (696)
T KOG2471|consen 270 KEAG----GTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLY 345 (696)
T ss_pred cccC----ccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHH
Confidence 0000 011222222 679999999999999999999999996 112 1223 78999999
Q ss_pred HHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 203 MHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 203 ~~qGr~eEAi~lLekALel~P~n~ 226 (575)
+..|++-+|.++|.++.+....++
T Consensus 346 Lh~grPl~AfqCf~~av~vfh~nP 369 (696)
T KOG2471|consen 346 LHSGRPLLAFQCFQKAVHVFHRNP 369 (696)
T ss_pred HhcCCcHHHHHHHHHHHHHHhcCc
Confidence 999999999999999999876665
No 234
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=95.00 E-value=0.36 Score=50.04 Aligned_cols=123 Identities=7% Similarity=-0.058 Sum_probs=87.9
Q ss_pred HcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-CCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHH
Q 038048 66 IDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQ-LDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMAR 144 (575)
Q Consensus 66 ~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~q-qGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~ 144 (575)
..+..+.|...|.+|++........|...|.+-.. .++.+-|..++...
T Consensus 13 r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~g------------------------------ 62 (280)
T PF05843_consen 13 RTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERG------------------------------ 62 (280)
T ss_dssp HHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHH------------------------------
T ss_pred HhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH------------------------------
Confidence 33458899999999986555566788888888666 45555577763221
Q ss_pred HhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-H---HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038048 145 SQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMN-K---QCNLAICLMHMNRVTEAKSLLQAVKI 220 (575)
Q Consensus 145 sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~-~---~~NLA~iy~~qGr~eEAi~lLekALe 220 (575)
+..-|++...|......+..+|+.+.|..+|++++..-|... . +......-...|+++....+.+++.+
T Consensus 63 -------lk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 63 -------LKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp -------HHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred -------HHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 223455666777777888899999999999999998877766 2 55677777888999999999999999
Q ss_pred HcCCC
Q 038048 221 SAGNR 225 (575)
Q Consensus 221 l~P~n 225 (575)
..|++
T Consensus 136 ~~~~~ 140 (280)
T PF05843_consen 136 LFPED 140 (280)
T ss_dssp HTTTS
T ss_pred Hhhhh
Confidence 87763
No 235
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.91 E-value=0.061 Score=59.69 Aligned_cols=122 Identities=18% Similarity=0.168 Sum_probs=82.3
Q ss_pred HHHcCChHHHHHHHHH-HHHcCCC---c---HH--HHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHH
Q 038048 64 QLIDKDPSRAVSLFWA-AINAGDR---V---DS--ALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIA 134 (575)
Q Consensus 64 ~l~~kd~eeAi~lf~k-AL~l~p~---~---~~--Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a 134 (575)
....|++.+|.+++.. -|...+. . .. +++|||.|+++.|.|.-++.++.+++...-..+...++
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~------- 322 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLK------- 322 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCC-------
Confidence 3456777777766643 2333333 1 12 46899999999999999999987765411111111110
Q ss_pred HHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH
Q 038048 135 FAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMH 204 (575)
Q Consensus 135 ~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~ 204 (575)
+.+.........-.++||.|..|+..|+.-.|.++|.+|+...-.|+. |..||.+.+.
T Consensus 323 ------------~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 323 ------------PAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred ------------CCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 000111112233458899999999999999999999999999999999 9999988753
No 236
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=94.59 E-value=2.4 Score=52.48 Aligned_cols=42 Identities=14% Similarity=0.231 Sum_probs=30.6
Q ss_pred hhhhh-HhhcCCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038048 41 GDIFH-VIHKVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAIN 82 (575)
Q Consensus 41 ae~y~-~~~~~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~ 82 (575)
++-|. .+...|+....+++-...++.-++.++|.+.+++||.
T Consensus 1444 aeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~ 1486 (1710)
T KOG1070|consen 1444 AEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALK 1486 (1710)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhh
Confidence 34454 4666677777777765556677889999999999985
No 237
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.57 E-value=1.2 Score=46.95 Aligned_cols=43 Identities=21% Similarity=0.076 Sum_probs=37.3
Q ss_pred HHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 038048 182 YRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGN 224 (575)
Q Consensus 182 yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~ 224 (575)
+++.+..+|++.. .+.||..|...|++++|...|-.++..+-.
T Consensus 225 l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~ 268 (304)
T COG3118 225 LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRG 268 (304)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 3455667899999 999999999999999999999999987654
No 238
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=94.56 E-value=0.46 Score=55.77 Aligned_cols=109 Identities=16% Similarity=0.168 Sum_probs=65.2
Q ss_pred HHHcCChHHHHHHHHHH----------HHcCCCc----------HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHH
Q 038048 64 QLIDKDPSRAVSLFWAA----------INAGDRV----------DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQ 123 (575)
Q Consensus 64 ~l~~kd~eeAi~lf~kA----------L~l~p~~----------~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~ 123 (575)
..-.+|.+.|+++|+++ |..+|.. ...|.--|.-+...|+.|.|+.+|..+-+ .+.
T Consensus 868 Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----~fs 943 (1416)
T KOG3617|consen 868 LEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----YFS 943 (1416)
T ss_pred HHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----hhh
Confidence 35567899999999975 2233332 22344456677778888888877544311 000
Q ss_pred HHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 038048 124 NKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSL 188 (575)
Q Consensus 124 ~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALei 188 (575)
.. +.. -+.++..++. +|.-...+-.+.|.||..|...|++.+|+.+|.+|-.+
T Consensus 944 ~V-rI~----C~qGk~~kAa-------~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 944 MV-RIK----CIQGKTDKAA-------RIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred he-eeE----eeccCchHHH-------HHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 00 000 0111111111 13334555668999999999999999999999987654
No 239
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.53 E-value=4.1 Score=42.08 Aligned_cols=171 Identities=19% Similarity=0.189 Sum_probs=103.0
Q ss_pred cCCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHH----cCCCc--HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHH---
Q 038048 49 KVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAIN----AGDRV--DSALKDMAVVMKQLDRSDEAIEARSGRIEEEI--- 119 (575)
Q Consensus 49 ~~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~----l~p~~--~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi--- 119 (575)
+......-|.+|+.++...++++.|=..|.+|-. .+..+ ...|...+++|. .++.++|+.+...+++.--
T Consensus 29 k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cyk-k~~~~eAv~cL~~aieIyt~~G 107 (288)
T KOG1586|consen 29 KYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYK-KVDPEEAVNCLEKAIEIYTDMG 107 (288)
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhh-ccChHHHHHHHHHHHHHHHhhh
Confidence 3333344567778888888888888777777643 23322 234666666664 4488888888544433211
Q ss_pred -------------HHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038048 120 -------------ELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKAL 186 (575)
Q Consensus 120 -------------~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkAL 186 (575)
++++..+.....++..+...++.+... +....-...+.-.+..-..+++|.+|+..|+++.
T Consensus 108 rf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e------es~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva 181 (288)
T KOG1586|consen 108 RFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE------ESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVA 181 (288)
T ss_pred HHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111111222222222221100 0011112255566777788999999999999998
Q ss_pred HhCCCCHH--------HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 187 SLGVDMNK--------QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 187 eidPdn~~--------~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
.-.-+|.- .+.-|.|++-..+.--|...+++..+++|.-.
T Consensus 182 ~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 182 RSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFT 229 (288)
T ss_pred HHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccc
Confidence 87766663 23568888888999999999999999999654
No 240
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.49 E-value=0.064 Score=38.14 Aligned_cols=32 Identities=25% Similarity=0.078 Sum_probs=25.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 195 QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 195 ~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
+.|||.+|..+|++++|+.++++++.+...-.
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 36 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEALEIRERLL 36 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHHHHHHHHh
Confidence 68999999999999999999999999876543
No 241
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.44 E-value=0.12 Score=40.92 Aligned_cols=34 Identities=24% Similarity=0.267 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048 161 ILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK 194 (575)
Q Consensus 161 a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~ 194 (575)
.++.||..+.++|+|++|..+.+.+|+++|+|..
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 4567777777778888888877777777777776
No 242
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.43 E-value=0.78 Score=46.12 Aligned_cols=63 Identities=19% Similarity=0.133 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH-------HHHHhCCC--C----HH-HHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 038048 160 RILGNLAWAYMQQNNFEMAEQYYR-------KALSLGVD--M----NK-QCNLAICLMHMNRVTEAKSLLQAVKISA 222 (575)
Q Consensus 160 ~a~~nLG~aY~~qGryeEAe~~yr-------kALeidPd--n----~~-~~NLA~iy~~qGr~eEAi~lLekALel~ 222 (575)
.++..+||+|..+|+-++...+++ +|++.... . .. ++-+|.+..+.|++++|+.+|.+++...
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 478889999999999655554444 45443322 2 23 7789999999999999999999999854
No 243
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.39 E-value=1.4 Score=46.13 Aligned_cols=70 Identities=19% Similarity=0.218 Sum_probs=57.7
Q ss_pred CcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 157 EKSRILGNLAWAYMQQ----NNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 157 d~~~a~~nLG~aY~~q----GryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
++..++..||.++... +++.+|.-+|++.-+..|-++. ...+|.|.+.+|+|+||..+++.+|..+++++
T Consensus 167 ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dp 241 (299)
T KOG3081|consen 167 DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDP 241 (299)
T ss_pred chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCH
Confidence 3444666677555543 6799999999999987777777 88899999999999999999999999988765
No 244
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.37 E-value=3 Score=45.81 Aligned_cols=154 Identities=10% Similarity=-0.000 Sum_probs=94.9
Q ss_pred HHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHH---HHHH---HHHHhhHHHHHHH-h
Q 038048 65 LIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEI---ELLQ---NKLKNIEEGIAFA-G 137 (575)
Q Consensus 65 l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi---~lL~---~~L~l~~~a~a~~-~ 137 (575)
...|+.+.|+.|-+.+-...|....+....-......|+++.|+.+..+..+..+ .+.+ ..+-+. .+.... .
T Consensus 165 qr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtA-kA~s~lda 243 (531)
T COG3898 165 QRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTA-KAMSLLDA 243 (531)
T ss_pred HhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHH-HHHHHhcC
Confidence 3468999999999999999999988877777888899999999999544332111 0000 000000 000000 0
Q ss_pred HHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHH
Q 038048 138 VKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQCNLAICLMHMNRVTEAKSLLQA 217 (575)
Q Consensus 138 nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~~~NLA~iy~~qGr~eEAi~lLek 217 (575)
....+.. . -..++++.|+...+-..-+.+|+..|+..++-.+++.+.+..|.-. ++.+|....--+-++.-+++
T Consensus 244 dp~~Ar~-~-A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~----ia~lY~~ar~gdta~dRlkR 317 (531)
T COG3898 244 DPASARD-D-ALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD----IALLYVRARSGDTALDRLKR 317 (531)
T ss_pred ChHHHHH-H-HHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH----HHHHHHHhcCCCcHHHHHHH
Confidence 0000000 0 0235778899888888888999999999999999999998887543 34444443333444444444
Q ss_pred HHH---HcCCC
Q 038048 218 VKI---SAGNR 225 (575)
Q Consensus 218 ALe---l~P~n 225 (575)
+-+ +.|++
T Consensus 318 a~~L~slk~nn 328 (531)
T COG3898 318 AKKLESLKPNN 328 (531)
T ss_pred HHHHHhcCccc
Confidence 433 34544
No 245
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.36 E-value=0.066 Score=33.95 Aligned_cols=30 Identities=17% Similarity=0.109 Sum_probs=27.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 038048 195 QCNLAICLMHMNRVTEAKSLLQAVKISAGN 224 (575)
Q Consensus 195 ~~NLA~iy~~qGr~eEAi~lLekALel~P~ 224 (575)
++++|.+|..+|++++|+..|++++++.|.
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 678999999999999999999999998774
No 246
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.04 E-value=1.1 Score=51.48 Aligned_cols=167 Identities=14% Similarity=0.129 Sum_probs=109.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCC----CcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHH----HHHHHHHHH--
Q 038048 57 YVRAKHIQLIDKDPSRAVSLFWAAINAGD----RVDSALKDMAVVMKQLDRSDEAIEARSGRIEE----EIELLQNKL-- 126 (575)
Q Consensus 57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p----~~~~Al~nLA~iy~qqGrydEAie~~~gaLee----Ai~lL~~~L-- 126 (575)
++.-+.++...++.+.|...|++|++.+= +.+..|.+-|..-++..+++.|+.+...+... .+..++...
T Consensus 390 w~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pv 469 (835)
T KOG2047|consen 390 WVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPV 469 (835)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcH
Confidence 34445566778899999999999988752 23567888888888999999999885444321 011111100
Q ss_pred -HhhHHHHHHHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHH-
Q 038048 127 -KNIEEGIAFAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGV--DMNK- 194 (575)
Q Consensus 127 -~l~~~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidP--dn~~- 194 (575)
..++..+..+.-+++...+.|. ...+.+.---+.+..|.|..+....-+++|-+.|++.+.+.+ ...+
T Consensus 470 Q~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~di 549 (835)
T KOG2047|consen 470 QARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDI 549 (835)
T ss_pred HHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHH
Confidence 1122233344444444444444 234555555677888999999999999999999999999864 3334
Q ss_pred HHHH-H--HHHHHcCCHHHHHHHHHHHHHHcC
Q 038048 195 QCNL-A--ICLMHMNRVTEAKSLLQAVKISAG 223 (575)
Q Consensus 195 ~~NL-A--~iy~~qGr~eEAi~lLekALel~P 223 (575)
|... - ..-..--+++.|..+|+++|+..|
T Consensus 550 W~tYLtkfi~rygg~klEraRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 550 WNTYLTKFIKRYGGTKLERARDLFEQALDGCP 581 (835)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence 4432 2 222334578889999999999887
No 247
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=93.96 E-value=0.11 Score=58.74 Aligned_cols=100 Identities=13% Similarity=0.022 Sum_probs=74.1
Q ss_pred HHHHHHH-HHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcH-HHHHHHHHHH
Q 038048 92 KDMAVVM-KQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKS-RILGNLAWAY 169 (575)
Q Consensus 92 ~nLA~iy-~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~-~a~~nLG~aY 169 (575)
.|+|-+| .-+|+...|+.+.++++.. .|... ....+||.++
T Consensus 610 ln~aglywr~~gn~~~a~~cl~~a~~~-------------------------------------~p~~~~v~~v~la~~~ 652 (886)
T KOG4507|consen 610 LNEAGLYWRAVGNSTFAIACLQRALNL-------------------------------------APLQQDVPLVNLANLL 652 (886)
T ss_pred eecccceeeecCCcHHHHHHHHHHhcc-------------------------------------ChhhhcccHHHHHHHH
Confidence 4455555 4579999999997775432 22221 1567788888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCC
Q 038048 170 MQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMD 228 (575)
Q Consensus 170 ~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~~ 228 (575)
..-|-.-+|-.++.++|.+.-.-+- .+-+|.+|+.+.+.+.|++.|++|++..|+++..
T Consensus 653 ~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~ 712 (886)
T KOG4507|consen 653 IHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPEC 712 (886)
T ss_pred HHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhh
Confidence 8888888888888888888855555 7788888888888888888888888888877643
No 248
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.85 E-value=0.84 Score=51.17 Aligned_cols=121 Identities=16% Similarity=0.093 Sum_probs=81.3
Q ss_pred ChHHHHHHHHHHHHcCCCc-------------------------HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHH
Q 038048 69 DPSRAVSLFWAAINAGDRV-------------------------DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQ 123 (575)
Q Consensus 69 d~eeAi~lf~kAL~l~p~~-------------------------~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~ 123 (575)
...+|+.+|+++++.+... ..+...||.+..++|+.+||++++..-
T Consensus 215 Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdL--------- 285 (539)
T PF04184_consen 215 TIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDL--------- 285 (539)
T ss_pred CHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHH---------
Confidence 4688999999998653221 234578999999999999999884331
Q ss_pred HHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHH-HHHHH
Q 038048 124 NKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQ--EKSRILGNLAWAYMQQNNFEMAEQYYRKALSL-GVDMNK-QCNLA 199 (575)
Q Consensus 124 ~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~P--d~~~a~~nLG~aY~~qGryeEAe~~yrkALei-dPdn~~-~~NLA 199 (575)
+...| +.-.++.||..+|+.++.|.++...+.+==++ -|..+. .+.-|
T Consensus 286 ----------------------------lke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaA 337 (539)
T PF04184_consen 286 ----------------------------LKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAA 337 (539)
T ss_pred ----------------------------HhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHH
Confidence 11122 23458999999999999999999988884323 245555 44444
Q ss_pred HHHHH-cCC---------------HHHHHHHHHHHHHHcCCCC
Q 038048 200 ICLMH-MNR---------------VTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 200 ~iy~~-qGr---------------~eEAi~lLekALel~P~n~ 226 (575)
.+..+ -++ -..|.+.+.+|++.+|..+
T Consensus 338 LLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 338 LLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred HHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 43322 222 1236688888999888654
No 249
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.80 E-value=0.74 Score=47.66 Aligned_cols=96 Identities=16% Similarity=0.007 Sum_probs=76.8
Q ss_pred HHHHHcCChHHHHHHHHHHHHc--------CCCc----------HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHH
Q 038048 62 HIQLIDKDPSRAVSLFWAAINA--------GDRV----------DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQ 123 (575)
Q Consensus 62 ~l~l~~kd~eeAi~lf~kAL~l--------~p~~----------~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~ 123 (575)
.-.+..+++.+|+..|+.||.. .|.. ...+.|++.+++..|+|=++++.-..
T Consensus 186 N~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~se---------- 255 (329)
T KOG0545|consen 186 NRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSE---------- 255 (329)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHH----------
Confidence 3446678899999999988642 2332 34577888889888888888876222
Q ss_pred HHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048 124 NKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK 194 (575)
Q Consensus 124 ~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~ 194 (575)
.+...|.+..+|+..|.+....=+.++|.+-|.++|+++|.-..
T Consensus 256 ---------------------------iL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 256 ---------------------------ILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred ---------------------------HHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 24568889999999999999999999999999999999998775
No 250
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=93.72 E-value=1.6 Score=53.87 Aligned_cols=143 Identities=13% Similarity=0.009 Sum_probs=100.4
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHH-----HHHHHHHHHHhhHHHHHHHhHHHHHHHHhc
Q 038048 73 AVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEE-----EIELLQNKLKNIEEGIAFAGVKTKMARSQG 147 (575)
Q Consensus 73 Ai~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLee-----Ai~lL~~~L~l~~~a~a~~~nla~al~sqg 147 (575)
..+-|.+.+..+|+..-.|...-.-++++++.++|.+...+++.. ..+-+.-. ..+.|+-.++....
T Consensus 1443 saeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiW--------iA~lNlEn~yG~ee 1514 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIW--------IAYLNLENAYGTEE 1514 (1710)
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHH--------HHHHhHHHhhCcHH
Confidence 346677888889998877776666778999999999884443321 00111111 11122222222110
Q ss_pred h-----hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038048 148 K-----KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKIS 221 (575)
Q Consensus 148 ~-----k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel 221 (575)
. +++.. .-+...+|..|.-+|..-+++++|.++|+..++-.-+... |..+|..++.+.+-++|..++.+||+.
T Consensus 1515 sl~kVFeRAcq-ycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~ 1593 (1710)
T KOG1070|consen 1515 SLKKVFERACQ-YCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKS 1593 (1710)
T ss_pred HHHHHHHHHHH-hcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh
Confidence 0 11111 2244568899999999999999999999999998887777 999999999999999999999999998
Q ss_pred cCC
Q 038048 222 AGN 224 (575)
Q Consensus 222 ~P~ 224 (575)
-|.
T Consensus 1594 lPk 1596 (1710)
T KOG1070|consen 1594 LPK 1596 (1710)
T ss_pred cch
Confidence 886
No 251
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.59 E-value=8.6 Score=43.34 Aligned_cols=74 Identities=9% Similarity=0.026 Sum_probs=60.6
Q ss_pred HHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----------HHHHHHH-HHHcCCHHHHHHHHHHHH
Q 038048 151 QITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK----------QCNLAIC-LMHMNRVTEAKSLLQAVK 219 (575)
Q Consensus 151 aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~----------~~NLA~i-y~~qGr~eEAi~lLekAL 219 (575)
.+..+|.+.++|+..-.+-...|+.+.-.+.|++|+.--|-... +.|.+.. -+...+.+.+.++|+.+|
T Consensus 314 ~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l 393 (677)
T KOG1915|consen 314 EVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACL 393 (677)
T ss_pred HHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 46669999999999999999999999999999999998776443 1244432 367889999999999999
Q ss_pred HHcCC
Q 038048 220 ISAGN 224 (575)
Q Consensus 220 el~P~ 224 (575)
++-|.
T Consensus 394 ~lIPH 398 (677)
T KOG1915|consen 394 DLIPH 398 (677)
T ss_pred hhcCc
Confidence 98874
No 252
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=93.54 E-value=2.4 Score=43.26 Aligned_cols=147 Identities=16% Similarity=0.099 Sum_probs=89.4
Q ss_pred cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----CCCHHHHHHHHhcCHHH----H---HHHHHHHHHhhHHHHHH
Q 038048 67 DKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQ----LDRSDEAIEARSGRIEE----E---IELLQNKLKNIEEGIAF 135 (575)
Q Consensus 67 ~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~q----qGrydEAie~~~gaLee----A---i~lL~~~L~l~~~a~a~ 135 (575)
..+..+|+.+|+++.. ..++.+.++||.+|.. ..++.+|..++..+.+. + ...+......-......
T Consensus 90 ~~~~~~A~~~~~~~a~--~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~ 167 (292)
T COG0790 90 SRDKTKAADWYRCAAA--DGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAV 167 (292)
T ss_pred cccHHHHHHHHHHHhh--cccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcc
Confidence 3468899999996554 4567789999999988 45888888886555442 1 11111111000000000
Q ss_pred HhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcC----
Q 038048 136 AGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQ----QNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMN---- 206 (575)
Q Consensus 136 ~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~----qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qG---- 206 (575)
......+..- ......-.+..+.++||.+|.. ..++.+|..+|.+|-+... .. .++++ ++...|
T Consensus 168 ~~~~~~A~~~----~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~ 240 (292)
T COG0790 168 AYDDKKALYL----YRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVK 240 (292)
T ss_pred cHHHHhHHHH----HHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCch
Confidence 0000000000 0111133467799999988865 4589999999999999888 55 88888 666666
Q ss_pred -----------CHHHHHHHHHHHHHHc
Q 038048 207 -----------RVTEAKSLLQAVKISA 222 (575)
Q Consensus 207 -----------r~eEAi~lLekALel~ 222 (575)
+...|...+.++...-
T Consensus 241 ~~~~~~~~~~~~~~~a~~~~~~~~~~~ 267 (292)
T COG0790 241 KAAFLTAAKEEDKKQALEWLQKACELG 267 (292)
T ss_pred hhhhcccccCCCHHHHHHHHHHHHHcC
Confidence 6667777777666643
No 253
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.49 E-value=0.52 Score=52.58 Aligned_cols=112 Identities=15% Similarity=0.080 Sum_probs=81.9
Q ss_pred hhhHhhcCCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHCCCHHHHHHHHhcCHHHH
Q 038048 43 IFHVIHKVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVD----SALKDMAVVMKQLDRSDEAIEARSGRIEEE 118 (575)
Q Consensus 43 ~y~~~~~~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~----~Al~nLA~iy~qqGrydEAie~~~gaLeeA 118 (575)
.-......|++..-+...+++....+++++|+..|++++.....-. -.++.+|.++.-+.+|++|..++..-.++
T Consensus 256 L~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~- 334 (468)
T PF10300_consen 256 LEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE- 334 (468)
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc-
Confidence 3344567788888888888999999999999999999885433322 36889999999999999999884331110
Q ss_pred HHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHhCC
Q 038048 119 IELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNF-------EMAEQYYRKALSLGV 190 (575)
Q Consensus 119 i~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGry-------eEAe~~yrkALeidP 190 (575)
. +=......|..|.+|...|+. ++|..+|+++-.+..
T Consensus 335 ------------------s-----------------~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 335 ------------------S-----------------KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred ------------------c-----------------ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 0 001122556678999999999 888888888766543
No 254
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=93.17 E-value=0.37 Score=49.95 Aligned_cols=68 Identities=12% Similarity=0.071 Sum_probs=55.8
Q ss_pred CcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 038048 157 EKSRILGNLAWAYMQ-QNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGN 224 (575)
Q Consensus 157 d~~~a~~nLG~aY~~-qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~ 224 (575)
-...+|...|.+-+. .++.+.|...|+.+++..|.+.. +..+...+...|+.+.|..+|++++..-+.
T Consensus 33 ~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~ 102 (280)
T PF05843_consen 33 CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPK 102 (280)
T ss_dssp S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSC
T ss_pred CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCc
Confidence 345688888888666 56666699999999999999999 999999999999999999999999987554
No 255
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=93.10 E-value=0.52 Score=41.01 Aligned_cols=47 Identities=19% Similarity=0.065 Sum_probs=29.6
Q ss_pred HHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048 179 EQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNR 225 (575)
Q Consensus 179 e~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n 225 (575)
+..++++++.+|++.. .+.||..|+..|++++|+..|-.++..+++.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 4456666777777766 7777777777777777777777766665543
No 256
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.99 E-value=3.7 Score=44.39 Aligned_cols=64 Identities=19% Similarity=0.122 Sum_probs=54.6
Q ss_pred cCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHH
Q 038048 155 EQEK---SRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAV 218 (575)
Q Consensus 155 ~Pd~---~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekA 218 (575)
+++. .-+...++..+...|-|++|++.-++|++|+|.+.= ...++.++...|+++|+.+...+.
T Consensus 168 n~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 168 NADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred CCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 5554 345667788999999999999999999999999887 888999999999999999887764
No 257
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=92.95 E-value=0.5 Score=41.12 Aligned_cols=67 Identities=12% Similarity=0.021 Sum_probs=49.1
Q ss_pred HHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHcCCHHHHHHHHHH
Q 038048 151 QITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK---QCNLAICLMHMNRVTEAKSLLQA 217 (575)
Q Consensus 151 aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~---~~NLA~iy~~qGr~eEAi~lLek 217 (575)
.+..+|++..+.+.||..|...|++++|+..+-.++..++++.. .-.|-.++...|.-+....-|++
T Consensus 14 ~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RR 83 (90)
T PF14561_consen 14 ALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRR 83 (90)
T ss_dssp HHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 46779999999999999999999999999999999999988743 45566666666665544444443
No 258
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=92.93 E-value=0.19 Score=39.75 Aligned_cols=32 Identities=16% Similarity=0.120 Sum_probs=28.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 195 QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 195 ~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
.+.||..+.++|+|++|..+++.+|++.|+|.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~ 35 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNR 35 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH
Confidence 67899999999999999999999999999875
No 259
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.89 E-value=5.6 Score=41.14 Aligned_cols=164 Identities=17% Similarity=0.127 Sum_probs=96.9
Q ss_pred CcHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHhcC------HHHHH
Q 038048 54 DSPYVRAKHIQLIDKDPSRAVSLFWAAINA--------GDRVDSALKDMAVVMKQLDRSDEAIEARSGR------IEEEI 119 (575)
Q Consensus 54 d~~yarA~~l~l~~kd~eeAi~lf~kAL~l--------~p~~~~Al~nLA~iy~qqGrydEAie~~~ga------LeeAi 119 (575)
+..++++. ..+..++++++..+..++... ........|..-.-+..+..++|++.+.... +..-.
T Consensus 30 ~~~~~~al-~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~lq~L~Elee~~~~~~~~~~~~~~~~~l~ 108 (352)
T PF02259_consen 30 EYSFYRAL-LALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKLQQLVELEEIIELKSNLSQNPQDLKSLL 108 (352)
T ss_pred hHHHHHHH-HHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHhhcccHHHHHHHH
Confidence 34455553 335788999888888777542 1122222333334444555666666654222 11122
Q ss_pred HHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HH-
Q 038048 120 ELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDM----NK- 194 (575)
Q Consensus 120 ~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn----~~- 194 (575)
..+...+.........+..+.......-. .+.+..+....+..++.+..+.|+++.|..++.++....+.. +.
T Consensus 109 ~~W~~Rl~~~~~~~~~~~~il~~R~~~l~--~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v 186 (352)
T PF02259_consen 109 KRWRSRLPNMQDDFSVWEPILSLRRLVLS--LILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRV 186 (352)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHh--cccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcch
Confidence 23333332222222222222222111000 011234455689999999999999999999999999877432 33
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038048 195 QCNLAICLMHMNRVTEAKSLLQAVKI 220 (575)
Q Consensus 195 ~~NLA~iy~~qGr~eEAi~lLekALe 220 (575)
.+..+.+++..|+..+|+..++..+.
T Consensus 187 ~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 187 FLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 67789999999999999999999998
No 260
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=92.80 E-value=0.55 Score=43.00 Aligned_cols=91 Identities=16% Similarity=0.117 Sum_probs=65.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCc----------------------HHHHHHHHHHHHHCCCHHHHHHHHhcCHHH
Q 038048 60 AKHIQLIDKDPSRAVSLFWAAINAGDRV----------------------DSALKDMAVVMKQLDRSDEAIEARSGRIEE 117 (575)
Q Consensus 60 A~~l~l~~kd~eeAi~lf~kAL~l~p~~----------------------~~Al~nLA~iy~qqGrydEAie~~~gaLee 117 (575)
.+......++++.++..+++++.+-.+. ..++..++..+...|++++|+....
T Consensus 12 ~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----- 86 (146)
T PF03704_consen 12 EARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ----- 86 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH-----
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH-----
Confidence 3444456778999999999998763221 2345567777778888888887632
Q ss_pred HHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038048 118 EIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALS 187 (575)
Q Consensus 118 Ai~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALe 187 (575)
.++.++|.+..++..|-.+|..+|++.+|+..|++...
T Consensus 87 --------------------------------~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 87 --------------------------------RALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp --------------------------------HHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred --------------------------------HHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 23677999999999999999999999999999998754
No 261
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.52 E-value=2.2 Score=45.38 Aligned_cols=52 Identities=13% Similarity=0.067 Sum_probs=45.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHH
Q 038048 59 RAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEA 110 (575)
Q Consensus 59 rA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~ 110 (575)
..+.+....++++.|++-|+.|++...-.+-.-|++|.++.+.|+++.|+.+
T Consensus 149 n~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~ 200 (459)
T KOG4340|consen 149 NLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKH 200 (459)
T ss_pred cchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHH
Confidence 3445556678999999999999999887778889999999999999999998
No 262
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=92.49 E-value=0.36 Score=51.22 Aligned_cols=67 Identities=13% Similarity=0.055 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCC
Q 038048 161 ILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQM 227 (575)
Q Consensus 161 a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~ 227 (575)
+-.+.+.-....|+.++|..+|+.||+++|+++. ...+|.+.-.-.+.-+|-.+|-+||.+.|.+.+
T Consensus 118 ~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nse 185 (472)
T KOG3824|consen 118 LALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSE 185 (472)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchH
Confidence 3345566677899999999999999999999999 999999999999999999999999999998754
No 263
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=92.48 E-value=4.3 Score=43.94 Aligned_cols=52 Identities=15% Similarity=0.263 Sum_probs=38.4
Q ss_pred cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHH
Q 038048 67 DKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKL 126 (575)
Q Consensus 67 ~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L 126 (575)
..|++.-+.+ |+.+|...+++..++.++..+|+++.|-++ ++.++-+++...
T Consensus 23 ~~Dp~~l~~l----l~~~PyHidtLlqls~v~~~~gd~~~A~~l----leRALf~~e~~~ 74 (360)
T PF04910_consen 23 SHDPNALINL----LQKNPYHIDTLLQLSEVYRQQGDHAQANDL----LERALFAFERAF 74 (360)
T ss_pred ccCHHHHHHH----HHHCCCcHHHHHHHHHHHHHcCCHHHHHHH----HHHHHHHHHHHH
Confidence 3466544433 467899999999999999999999999999 444554454443
No 264
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=91.91 E-value=0.29 Score=55.51 Aligned_cols=62 Identities=24% Similarity=0.155 Sum_probs=53.6
Q ss_pred HHHH-HHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 038048 163 GNLA-WAYMQQNNFEMAEQYYRKALSLGVDMNK--QCNLAICLMHMNRVTEAKSLLQAVKISAGN 224 (575)
Q Consensus 163 ~nLG-~aY~~qGryeEAe~~yrkALeidPdn~~--~~NLA~iy~~qGr~eEAi~lLekALel~P~ 224 (575)
.|+| .-..-+|+.-.|++++..|+-..|.... ..|||+++++.|-.-+|-.++.++|.+.-.
T Consensus 610 ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~s 674 (886)
T KOG4507|consen 610 LNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSS 674 (886)
T ss_pred eecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhccc
Confidence 3444 4455689999999999999999998776 899999999999999999999999998743
No 265
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.89 E-value=5.4 Score=41.23 Aligned_cols=144 Identities=13% Similarity=0.091 Sum_probs=86.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCC----cHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHH
Q 038048 57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDR----VDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEG 132 (575)
Q Consensus 57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~----~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a 132 (575)
+.+...+.+..|.++.|...+.++...++. .+.+.+..+.++...|+..+|+......+.. .+.........
T Consensus 149 ~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~---~~~~~~~~~~~- 224 (352)
T PF02259_consen 149 WLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC---RLSKNIDSISN- 224 (352)
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH---HhhhccccccH-
Confidence 445556667889999999999988875521 3456777899999999999999874333221 11110000000
Q ss_pred HHHHhHHH-HHHHHhch-hhHHhhcCCcHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHH
Q 038048 133 IAFAGVKT-KMARSQGK-KIQITVEQEKSRILGNLAWAYMQQ------NNFEMAEQYYRKALSLGVDMNK-QCNLAICLM 203 (575)
Q Consensus 133 ~a~~~nla-~al~sqg~-k~aL~L~Pd~~~a~~nLG~aY~~q------GryeEAe~~yrkALeidPdn~~-~~NLA~iy~ 203 (575)
....... ........ ............++..+|.....+ +.+++++..|++|+.++|+... ++.+|..+.
T Consensus 225 -~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~ 303 (352)
T PF02259_consen 225 -AELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFND 303 (352)
T ss_pred -HHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHH
Confidence 0000000 00000000 000000111234888889887777 9999999999999999999999 888888765
Q ss_pred Hc
Q 038048 204 HM 205 (575)
Q Consensus 204 ~q 205 (575)
..
T Consensus 304 ~~ 305 (352)
T PF02259_consen 304 KL 305 (352)
T ss_pred HH
Confidence 43
No 266
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=91.77 E-value=9.6 Score=45.53 Aligned_cols=190 Identities=13% Similarity=0.018 Sum_probs=113.7
Q ss_pred CCCcCCCCcCccchhhhhhHhhcCCCC---CcHHH----HHHHHHHHcCChHHHHHHHHHHHHcCCCc-----HHHHHHH
Q 038048 27 SERKRISTPENNKKGDIFHVIHKVPSG---DSPYV----RAKHIQLIDKDPSRAVSLFWAAINAGDRV-----DSALKDM 94 (575)
Q Consensus 27 se~r~~~~~~~r~Rae~y~~~~~~ps~---d~~ya----rA~~l~l~~kd~eeAi~lf~kAL~l~p~~-----~~Al~nL 94 (575)
+.-|++++ ..-.+.+..+...++. ...++ -.+++.++.+++++|+.+-+.++..=|.. ..++..+
T Consensus 427 s~~r~~ea---~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 427 SQHRLAEA---ETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HccChHHH---HHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 45677776 5555555555555422 11222 13356788999999999999999876554 2367789
Q ss_pred HHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch------------hhH--HhhcCCcHH
Q 038048 95 AVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK------------KIQ--ITVEQEKSR 160 (575)
Q Consensus 95 A~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~------------k~a--L~L~Pd~~~ 160 (575)
|.+..-.|++++|..+...+.+.+.. ++ ..+...-........+..+|+ ... +.-.|-..-
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~-~~----~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f 578 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQ-HD----VYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEF 578 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHH-cc----cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchh
Confidence 99999999999999985554333221 00 000111111122222333332 111 111233223
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHH----HHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 038048 161 ILGNLAWAYMQQNNFEMAEQYYRKALSLG----VDMNK----QCNLAICLMHMNRVTEAKSLLQAVKISAGN 224 (575)
Q Consensus 161 a~~nLG~aY~~qGryeEAe~~yrkALeid----Pdn~~----~~NLA~iy~~qGr~eEAi~lLekALel~P~ 224 (575)
.+...+.++...-+++.|+.-.+..+++- |.... .++||.++...|++++|...+.++..+-.+
T Consensus 579 ~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~ 650 (894)
T COG2909 579 LVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLN 650 (894)
T ss_pred HHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 33334444444444888888888888763 33332 348999999999999999999998886543
No 267
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=91.71 E-value=1.5 Score=44.13 Aligned_cols=109 Identities=11% Similarity=0.119 Sum_probs=69.7
Q ss_pred ChHHHHHHHHHHHHc----CCC-c--HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHH
Q 038048 69 DPSRAVSLFWAAINA----GDR-V--DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTK 141 (575)
Q Consensus 69 d~eeAi~lf~kAL~l----~p~-~--~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~ 141 (575)
++++|+..|.-||-. +.. . +..+..+|-+|..+|+-++...++..+++.-...+....
T Consensus 92 t~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~--------------- 156 (214)
T PF09986_consen 92 TLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENED--------------- 156 (214)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCc---------------
Confidence 578888888777632 212 1 346778899999999966666664444332222211110
Q ss_pred HHHHhchhhHHhhcC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-H-HHHHHHHH
Q 038048 142 MARSQGKKIQITVEQ-EKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMN-K-QCNLAICL 202 (575)
Q Consensus 142 al~sqg~k~aL~L~P-d~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~-~-~~NLA~iy 202 (575)
....+ +...+++.+|.++.+.|++++|..+|.+++...-... . ..++|.=.
T Consensus 157 ----------~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR~~ 210 (214)
T PF09986_consen 157 ----------FPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMARDQ 210 (214)
T ss_pred ----------CCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHH
Confidence 00011 2245889999999999999999999999998654444 2 66666533
No 268
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.54 E-value=1.4 Score=42.53 Aligned_cols=70 Identities=14% Similarity=0.162 Sum_probs=56.3
Q ss_pred hhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Q 038048 153 TVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAG 223 (575)
Q Consensus 153 ~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P 223 (575)
.+.|+...+-...|+++...|++.+|+..|+.+.+-.|.++. .--|+.||..+|+.+= ..+-+++++..+
T Consensus 38 vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~W-r~~A~evle~~~ 108 (160)
T PF09613_consen 38 VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSW-RRYADEVLESGA 108 (160)
T ss_pred HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHhcCC
Confidence 358999999999999999999999999999999988999988 7888999988887642 223344555543
No 269
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=91.51 E-value=1.3 Score=51.64 Aligned_cols=59 Identities=20% Similarity=0.128 Sum_probs=38.3
Q ss_pred cHHHHHHHHHHHcCChHHHHHHHHH------HHHcC----CC-cHHHHHHHHHHHHHCCCHHHHHHHHhc
Q 038048 55 SPYVRAKHIQLIDKDPSRAVSLFWA------AINAG----DR-VDSALKDMAVVMKQLDRSDEAIEARSG 113 (575)
Q Consensus 55 ~~yarA~~l~l~~kd~eeAi~lf~k------AL~l~----p~-~~~Al~nLA~iy~qqGrydEAie~~~g 113 (575)
..|-+|+.++.--.|+++|+++|++ |+++. |. ....-..-|.-+.++|+++.|+..+..
T Consensus 662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfie 731 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIE 731 (1636)
T ss_pred HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHH
Confidence 3455677776667789999999874 44432 11 111223347778889999999988543
No 270
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=91.50 E-value=12 Score=44.80 Aligned_cols=179 Identities=16% Similarity=0.053 Sum_probs=102.6
Q ss_pred hhcCCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHH--HH--
Q 038048 47 IHKVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIE--LL-- 122 (575)
Q Consensus 47 ~~~~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~--lL-- 122 (575)
..+.|+..+..+--+...+..|..++|..+++..-...+.+...+--+-.+|.++|++++|..+|..+...... .+
T Consensus 36 lkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~ 115 (932)
T KOG2053|consen 36 LKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEELLYH 115 (932)
T ss_pred HHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHHH
Confidence 44667666666655566678899999997776655556666778888999999999999999997665543221 11
Q ss_pred --HHHHH--hh----HHHHH-----------HHhHHHHHHHHhch-----------------hhHHhhc-CCcHHHH-HH
Q 038048 123 --QNKLK--NI----EEGIA-----------FAGVKTKMARSQGK-----------------KIQITVE-QEKSRIL-GN 164 (575)
Q Consensus 123 --~~~L~--l~----~~a~a-----------~~~nla~al~sqg~-----------------k~aL~L~-Pd~~~a~-~n 164 (575)
....+ .. ..+.. ++.-....+..... ...+... +-...+= .-
T Consensus 116 lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~L 195 (932)
T KOG2053|consen 116 LFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIIL 195 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHH
Confidence 00000 00 00000 01110000100000 0011111 1111111 11
Q ss_pred HHHHHHHcCCHHHHHHHHH-HHHHhCCCCHH-HHH-HHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048 165 LAWAYMQQNNFEMAEQYYR-KALSLGVDMNK-QCN-LAICLMHMNRVTEAKSLLQAVKISAGNR 225 (575)
Q Consensus 165 LG~aY~~qGryeEAe~~yr-kALeidPdn~~-~~N-LA~iy~~qGr~eEAi~lLekALel~P~n 225 (575)
.-.++..+|++++|...+. ...+..+.-.. ..| -...+...+++.+-.++..+++...++|
T Consensus 196 yl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 196 YLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 1256778899999999994 44444444443 444 4557788899999888888888888776
No 271
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=91.32 E-value=0.26 Score=50.47 Aligned_cols=60 Identities=15% Similarity=0.112 Sum_probs=55.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCC
Q 038048 168 AYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQM 227 (575)
Q Consensus 168 aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~ 227 (575)
...+.++.+.|.+.|.+||++-|+... |+.+|..-.+.|+++.|.+.|++.++++|++..
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 456778999999999999999999999 999999999999999999999999999998753
No 272
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=91.30 E-value=2.7 Score=46.84 Aligned_cols=127 Identities=15% Similarity=0.024 Sum_probs=78.4
Q ss_pred HHHHHHHHHHCCCHHHHHHHHhcCHHHHH---HHHHHHH--HhhHHHHHH-HhHHHHHHHHhchhhHHhhcCCcHHHHHH
Q 038048 91 LKDMAVVMKQLDRSDEAIEARSGRIEEEI---ELLQNKL--KNIEEGIAF-AGVKTKMARSQGKKIQITVEQEKSRILGN 164 (575)
Q Consensus 91 l~nLA~iy~qqGrydEAie~~~gaLeeAi---~lL~~~L--~l~~~a~a~-~~nla~al~sqg~k~aL~L~Pd~~~a~~n 164 (575)
+.--|.++.+++++++|+.++.+.+++.. ..++..+ ..+ ..++ ..|+..+..... ..-...|+.+-....
T Consensus 9 lc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~gri--lnAffl~nld~Me~~l~--~l~~~~~~s~~l~LF 84 (549)
T PF07079_consen 9 LCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRI--LNAFFLNNLDLMEKQLM--ELRQQFGKSAYLPLF 84 (549)
T ss_pred HHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHH--HHHHHHhhHHHHHHHHH--HHHHhcCCchHHHHH
Confidence 34458899999999999999877766543 2233222 000 0011 122211110000 001124555667777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----------------HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038048 165 LAWAYMQQNNFEMAEQYYRKALSLGVDMNK----------------QCNLAICLMHMNRVTEAKSLLQAVKIS 221 (575)
Q Consensus 165 LG~aY~~qGryeEAe~~yrkALeidPdn~~----------------~~NLA~iy~~qGr~eEAi~lLekALel 221 (575)
.|.+.++++.|.+|++.+-.--..-.++.. -.-.|.+++++|++.|+..++++++..
T Consensus 85 ~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 85 KALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 899999999999999887765544222111 124688999999999999999998874
No 273
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=90.94 E-value=5 Score=44.83 Aligned_cols=60 Identities=23% Similarity=0.211 Sum_probs=50.7
Q ss_pred cHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHH
Q 038048 158 KSRILGNLA--WAYMQQNNFEMAEQYYRKALSLGVDMNKQCNLAICLMHMNRVTEAKSLLQA 217 (575)
Q Consensus 158 ~~~a~~nLG--~aY~~qGryeEAe~~yrkALeidPdn~~~~NLA~iy~~qGr~eEAi~lLek 217 (575)
+..+-+.|+ .-++.+|+|.++.-+-....++.|....+--+|.+++...+|+||..+|..
T Consensus 459 e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 459 EEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 344556665 668899999999999999999999433388899999999999999999875
No 274
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=90.83 E-value=1.1 Score=38.69 Aligned_cols=57 Identities=16% Similarity=0.096 Sum_probs=46.2
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCH---------H-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048 169 YMQQNNFEMAEQYYRKALSLGVDMN---------K-QCNLAICLMHMNRVTEAKSLLQAVKISAGNR 225 (575)
Q Consensus 169 Y~~qGryeEAe~~yrkALeidPdn~---------~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n 225 (575)
..+.|+|.+|+..+.+.+....... . ..++|.++...|++++|+..+++++.+-.+.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 4578999999988888887643221 2 6789999999999999999999999986643
No 275
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=90.78 E-value=1.1 Score=54.77 Aligned_cols=140 Identities=19% Similarity=0.139 Sum_probs=99.3
Q ss_pred HHHHHHHHHcCChHHHHH------HHHHH-HHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhH
Q 038048 58 VRAKHIQLIDKDPSRAVS------LFWAA-INAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIE 130 (575)
Q Consensus 58 arA~~l~l~~kd~eeAi~------lf~kA-L~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~ 130 (575)
...+...+.++.+.+|.. ++... ..+.|.....+..|+.++...|++++|+....++.-....+++
T Consensus 936 ~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g------- 1008 (1236)
T KOG1839|consen 936 PEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLG------- 1008 (1236)
T ss_pred hhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhcc-------
Confidence 344445556666665555 66633 3457888889999999999999999999985543211111110
Q ss_pred HHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCH---H-HHHHHHH
Q 038048 131 EGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLG-----VDMN---K-QCNLAIC 201 (575)
Q Consensus 131 ~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeid-----Pdn~---~-~~NLA~i 201 (575)
.-.|+....+.+|+...+..++...|...+.+|+.+. |+.+ . ..|++.+
T Consensus 1009 ----------------------~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l 1066 (1236)
T KOG1839|consen 1009 ----------------------KDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELL 1066 (1236)
T ss_pred ----------------------CCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHH
Confidence 1123444578888888888889999999999988873 4344 3 5789999
Q ss_pred HHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 202 LMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 202 y~~qGr~eEAi~lLekALel~P~n~ 226 (575)
+...++++.|+.+++.|+..+....
T Consensus 1067 ~~~v~e~d~al~~le~A~a~~~~v~ 1091 (1236)
T KOG1839|consen 1067 LLGVEEADTALRYLESALAKNKKVL 1091 (1236)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999765443
No 276
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=90.47 E-value=4.5 Score=46.86 Aligned_cols=157 Identities=10% Similarity=0.078 Sum_probs=105.9
Q ss_pred HHHHHcCChHHHHHHHHHHHH-cCCCc-----HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHH-------HHHHHHHHh
Q 038048 62 HIQLIDKDPSRAVSLFWAAIN-AGDRV-----DSALKDMAVVMKQLDRSDEAIEARSGRIEEEI-------ELLQNKLKN 128 (575)
Q Consensus 62 ~l~l~~kd~eeAi~lf~kAL~-l~p~~-----~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi-------~lL~~~L~l 128 (575)
++-++++++.+-+.-|..|+. .+|.. -..+..+|..|...|+.+.|..++.++..... .++..--.
T Consensus 355 RV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~wae- 433 (835)
T KOG2047|consen 355 RVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAE- 433 (835)
T ss_pred hhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHH-
Confidence 456788899999999988875 46653 24788999999999999999999554433111 11100000
Q ss_pred hHHHHHHHh-HHHHHHHHhch------hhHHhh--c--C------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 038048 129 IEEGIAFAG-VKTKMARSQGK------KIQITV--E--Q------EKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVD 191 (575)
Q Consensus 129 ~~~a~a~~~-nla~al~sqg~------k~aL~L--~--P------d~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPd 191 (575)
....+ +.-.++.-.++ ...+.. + | ....+|..++++....|-++.-...|.+.+++.=-
T Consensus 434 ----mElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria 509 (835)
T KOG2047|consen 434 ----MELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA 509 (835)
T ss_pred ----HHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC
Confidence 00000 00000000000 000000 0 0 12337788889999999999999999999999999
Q ss_pred CHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Q 038048 192 MNK-QCNLAICLMHMNRVTEAKSLLQAVKISAG 223 (575)
Q Consensus 192 n~~-~~NLA~iy~~qGr~eEAi~lLekALel~P 223 (575)
.+. ..|.|..+-+..-+++|.+.|++-+.+-+
T Consensus 510 TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk 542 (835)
T KOG2047|consen 510 TPQIIINYAMFLEEHKYFEESFKAYERGISLFK 542 (835)
T ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC
Confidence 999 89999999999999999999999988765
No 277
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=90.11 E-value=8 Score=36.23 Aligned_cols=61 Identities=21% Similarity=0.132 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCCHH-H----HHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038048 161 ILGNLAWAYMQQNNFEMAEQYYRKALS-------LGVDMNK-Q----CNLAICLMHMNRVTEAKSLLQAVKIS 221 (575)
Q Consensus 161 a~~nLG~aY~~qGryeEAe~~yrkALe-------idPdn~~-~----~NLA~iy~~qGr~eEAi~lLekALel 221 (575)
.+-.|+.++..+|+|++++..-.+||. ++.|.-. | ++.|.++..+|+.+||+..|+.+-+.
T Consensus 57 chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 57 CHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 566788999999999999888888876 4555544 3 58899999999999999999988764
No 278
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.08 E-value=3.9 Score=44.20 Aligned_cols=154 Identities=8% Similarity=-0.090 Sum_probs=88.7
Q ss_pred HHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHH---HHHHHHHHHHhhHHHHHHHhHHHH
Q 038048 65 LIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEE---EIELLQNKLKNIEEGIAFAGVKTK 141 (575)
Q Consensus 65 l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLee---Ai~lL~~~L~l~~~a~a~~~nla~ 141 (575)
...|+.-+|.....+.|.-.|.+.-++.---.++...|+.+.-.....+.+.. .+-.+-..+.++.-++.-.+-+.+
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 44556666666677777777766555554555555566655555443332221 010011111111000000000000
Q ss_pred HHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHcCCHHHHHHHHH
Q 038048 142 MARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-----QCNLAICLMHMNRVTEAKSLLQ 216 (575)
Q Consensus 142 al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-----~~NLA~iy~~qGr~eEAi~lLe 216 (575)
+..+- .+++.+++.+.-+...++-++...|++.++.++..+--..--+.-. +..-|.+|++-+.|+.|+.+|+
T Consensus 194 -AEk~A-~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 194 -AEKQA-DRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred -HHHHH-HhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 00000 3568889999999999999999999999999887764433222111 3467999999999999999998
Q ss_pred HHHH
Q 038048 217 AVKI 220 (575)
Q Consensus 217 kALe 220 (575)
+-+-
T Consensus 272 ~ei~ 275 (491)
T KOG2610|consen 272 REIW 275 (491)
T ss_pred HHHH
Confidence 6443
No 279
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.46 E-value=6.8 Score=44.72 Aligned_cols=66 Identities=17% Similarity=0.120 Sum_probs=40.2
Q ss_pred cCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH----cCCHHHHHHHHHHHHHHc
Q 038048 155 EQEKSRILGNLAWAYMQQN---NFEMAEQYYRKALSLGVDMNK-QCNLAICLMH----MNRVTEAKSLLQAVKISA 222 (575)
Q Consensus 155 ~Pd~~~a~~nLG~aY~~qG---ryeEAe~~yrkALeidPdn~~-~~NLA~iy~~----qGr~eEAi~lLekALel~ 222 (575)
+-.++.+.+.||.+|..-. ++..|..+|..|... .+.. .++||.+|.. .-+...|..++.++.+..
T Consensus 321 ~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 321 ELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred hcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 3345556677777666655 456777777766532 3344 6666666643 346667777777776654
No 280
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=88.90 E-value=13 Score=38.29 Aligned_cols=130 Identities=18% Similarity=0.103 Sum_probs=76.7
Q ss_pred HHHcCChHHHHHHHHHHHHc----CCCc----HHHHHHHHHHHHHCC-CHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHH
Q 038048 64 QLIDKDPSRAVSLFWAAINA----GDRV----DSALKDMAVVMKQLD-RSDEAIEARSGRIEEEIELLQNKLKNIEEGIA 134 (575)
Q Consensus 64 ~l~~kd~eeAi~lf~kAL~l----~p~~----~~Al~nLA~iy~qqG-rydEAie~~~gaLeeAi~lL~~~L~l~~~a~a 134 (575)
...+||.+.|..+|.|+-.. +|.. ...+|+.|..+.+.+ ++++|.....++++ ++.....+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~----~l~~~~~~------ 72 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYD----ILEKPGKM------ 72 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH----HHHhhhhc------
Confidence 35678999999999987543 3332 346899999999999 99999999555443 22210000
Q ss_pred HHhHHHHHHHHhchhhHHhhcCCc----HHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhCCCCHHH--HHHHHHHHHc
Q 038048 135 FAGVKTKMARSQGKKIQITVEQEK----SRILGNLAWAYMQQNNFEM---AEQYYRKALSLGVDMNKQ--CNLAICLMHM 205 (575)
Q Consensus 135 ~~~nla~al~sqg~k~aL~L~Pd~----~~a~~nLG~aY~~qGryeE---Ae~~yrkALeidPdn~~~--~NLA~iy~~q 205 (575)
....++. ..++..|+.+|...+.++- |+.+.+.+-.-.|+.+.. ..+-.+.. .
T Consensus 73 -----------------~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~-~ 134 (278)
T PF08631_consen 73 -----------------DKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLK-S 134 (278)
T ss_pred -----------------cccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhc-c
Confidence 0001111 1255666777777666543 333444444445665552 33333333 6
Q ss_pred CCHHHHHHHHHHHHHH
Q 038048 206 NRVTEAKSLLQAVKIS 221 (575)
Q Consensus 206 Gr~eEAi~lLekALel 221 (575)
++.+++...+.+++..
T Consensus 135 ~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 135 FDEEEYEEILMRMIRS 150 (278)
T ss_pred CChhHHHHHHHHHHHh
Confidence 7777777777777764
No 281
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.57 E-value=1.2 Score=34.06 Aligned_cols=41 Identities=24% Similarity=0.354 Sum_probs=30.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHHH
Q 038048 196 CNLAICLMHMNRVTEAKSLLQAVKISAGNRQMDTSYSRSFERAIQMLTE 244 (575)
Q Consensus 196 ~NLA~iy~~qGr~eEAi~lLekALel~P~n~~~~~~l~slerA~elL~e 244 (575)
++||.+|+++|+.+.|..++++++. ..+ ......|+.++..
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~-~~~-------~~q~~eA~~LL~~ 43 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE-EGD-------EAQRQEARALLAQ 43 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH-cCC-------HHHHHHHHHHHhc
Confidence 6899999999999999999999995 221 1334566666653
No 282
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=88.47 E-value=1.6 Score=46.94 Aligned_cols=89 Identities=15% Similarity=0.066 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCCh----hH
Q 038048 161 ILGNLAWAYMQQNNFEMAEQYYRKALSLG---VDMNK--QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMDT----SY 231 (575)
Q Consensus 161 a~~nLG~aY~~qGryeEAe~~yrkALeid---Pdn~~--~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~~~----~~ 231 (575)
-|-.-|+-|++-.+|..|+.+|.+.|+.. |+-.. +.|.|.+....|+|..|+.-+.+++.++|.+..+. ..
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 44556899999999999999999999985 55444 77999999999999999999999999999876421 12
Q ss_pred HHHHHHHHHHHHHhcccc
Q 038048 232 SRSFERAIQMLTELESPS 249 (575)
Q Consensus 232 l~slerA~elL~ele~al 249 (575)
+-.++++.+.+.-++..+
T Consensus 163 ~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEGL 180 (390)
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 233444444444444443
No 283
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=88.36 E-value=7.5 Score=43.37 Aligned_cols=129 Identities=16% Similarity=0.180 Sum_probs=75.7
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHCCCHHHHHHHHhc---CHHHHHHHHHHHHHhhHHHHHHHh
Q 038048 62 HIQLIDKDPSRAVSLFWAAINAGDRV-DSALKDMAVVMKQLDRSDEAIEARSG---RIEEEIELLQNKLKNIEEGIAFAG 137 (575)
Q Consensus 62 ~l~l~~kd~eeAi~lf~kAL~l~p~~-~~Al~nLA~iy~qqGrydEAie~~~g---aLeeAi~lL~~~L~l~~~a~a~~~ 137 (575)
..++..+|++++..+.... ++-|.. ..-...++.-+.++|-++.|+..-.. +++.|++ .+
T Consensus 269 k~av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~---------------lg 332 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDHRFELALQ---------------LG 332 (443)
T ss_dssp HHHHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHH---------------CT
T ss_pred HHHHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHh---------------cC
Confidence 3457788998876666421 112222 23466788899999999999988211 1111111 12
Q ss_pred HHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHH
Q 038048 138 VKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQCNLAICLMHMNRVTEAKSLLQA 217 (575)
Q Consensus 138 nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~~~NLA~iy~~qGr~eEAi~lLek 217 (575)
++..++. +...-++...|..||.+.+.+|+++-|+.+|+++=. +..|..+|.-.|+.+.=.++.+.
T Consensus 333 ~L~~A~~-------~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-------~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 333 NLDIALE-------IAKELDDPEKWKQLGDEALRQGNIELAEECYQKAKD-------FSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp -HHHHHH-------HCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT--------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred CHHHHHH-------HHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-------ccccHHHHHHhCCHHHHHHHHHH
Confidence 2222211 223445677999999999999999999999998632 45677778888887666666555
Q ss_pred HHH
Q 038048 218 VKI 220 (575)
Q Consensus 218 ALe 220 (575)
+..
T Consensus 399 a~~ 401 (443)
T PF04053_consen 399 AEE 401 (443)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 284
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=88.22 E-value=0.55 Score=31.29 Aligned_cols=23 Identities=30% Similarity=0.241 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 038048 161 ILGNLAWAYMQQNNFEMAEQYYR 183 (575)
Q Consensus 161 a~~nLG~aY~~qGryeEAe~~yr 183 (575)
++++||.+|..+|++++|+..++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 44566666666666666666554
No 285
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=88.16 E-value=1.8 Score=41.13 Aligned_cols=67 Identities=15% Similarity=0.195 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHcC---CHHHHHHHHHHHHH-hCCCCHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 160 RILGNLAWAYMQQN---NFEMAEQYYRKALS-LGVDMNK--QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 160 ~a~~nLG~aY~~qG---ryeEAe~~yrkALe-idPdn~~--~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
...+++++++.... +..+-+.+++..++ -.|+... .+-||..+.+.|+|++|+.+++..|+..|+|.
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 37789998887765 45678899999997 5565554 78999999999999999999999999999865
No 286
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=87.99 E-value=2 Score=37.15 Aligned_cols=35 Identities=26% Similarity=0.151 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048 160 RILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK 194 (575)
Q Consensus 160 ~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~ 194 (575)
.++.++|.++...|++++|+..+++|+++-....+
T Consensus 42 ~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D 76 (94)
T PF12862_consen 42 YALLNLAELHRRFGHYEEALQALEEAIRLARENGD 76 (94)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCC
Confidence 37789999999999999999999999998765544
No 287
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.52 E-value=4.3 Score=42.67 Aligned_cols=71 Identities=13% Similarity=0.017 Sum_probs=64.5
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCC
Q 038048 157 EKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQM 227 (575)
Q Consensus 157 d~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~ 227 (575)
....++..++..+...|+++.++..+++.+.++|-+.. +..|-.+|...|+...|+..|+++-....++++
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlg 222 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELG 222 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcC
Confidence 34558889999999999999999999999999999999 999999999999999999999999987666654
No 288
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=87.39 E-value=4.3 Score=47.63 Aligned_cols=140 Identities=12% Similarity=0.157 Sum_probs=80.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHH------Hc----CCC-cHHHHHHHHHHHHHCCCHHHHHHHHhcCHH--HHHHHH-
Q 038048 57 YVRAKHIQLIDKDPSRAVSLFWAAI------NA----GDR-VDSALKDMAVVMKQLDRSDEAIEARSGRIE--EEIELL- 122 (575)
Q Consensus 57 yarA~~l~l~~kd~eeAi~lf~kAL------~l----~p~-~~~Al~nLA~iy~qqGrydEAie~~~gaLe--eAi~lL- 122 (575)
|+.|-++++.-+.|+.|+..|.+.- .+ .++ .-+.+..+|.-|...|++++|++.+..+-+ .+..++
T Consensus 840 f~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~kaavnmyk 919 (1636)
T KOG3616|consen 840 FAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDFKAAVNMYK 919 (1636)
T ss_pred hhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhHHHHHHHhh
Confidence 3444455555678888888887642 11 122 134677889999999999999988554422 222211
Q ss_pred -----HHHHHhh-------------H---------HHHHHHhHHHHHHHHhch-------hh-----HHhhcCCcHHHHH
Q 038048 123 -----QNKLKNI-------------E---------EGIAFAGVKTKMARSQGK-------KI-----QITVEQEKSRILG 163 (575)
Q Consensus 123 -----~~~L~l~-------------~---------~a~a~~~nla~al~sqg~-------k~-----aL~L~Pd~~~a~~ 163 (575)
..+.+.. + .+..++++++.+...-.- .+ .+.++..-..++.
T Consensus 920 ~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhl 999 (1636)
T KOG3616|consen 920 ASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHL 999 (1636)
T ss_pred hhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchh
Confidence 1111100 0 000011111111100000 01 1333444556888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 038048 164 NLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQC 196 (575)
Q Consensus 164 nLG~aY~~qGryeEAe~~yrkALeidPdn~~~~ 196 (575)
.++..+...|++++|-..|.+|++++.-|..|+
T Consensus 1000 k~a~~ledegk~edaskhyveaiklntynitwc 1032 (1636)
T KOG3616|consen 1000 KLAMFLEDEGKFEDASKHYVEAIKLNTYNITWC 1032 (1636)
T ss_pred HHhhhhhhccchhhhhHhhHHHhhcccccchhh
Confidence 899999999999999999999999998777644
No 289
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.29 E-value=3.4 Score=40.24 Aligned_cols=101 Identities=19% Similarity=0.102 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHH
Q 038048 88 DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAW 167 (575)
Q Consensus 88 ~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~ 167 (575)
..++..+|..|.+.|++++|+++|....+.- .. ..+-.+.+.++-.
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~-~~---------------------------------~~~~id~~l~~ir 81 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYC-TS---------------------------------PGHKIDMCLNVIR 81 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc-CC---------------------------------HHHHHHHHHHHHH
Confidence 3578899999999999999999966532210 00 0112347788889
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCC--CHH-----HHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 038048 168 AYMQQNNFEMAEQYYRKALSLGVD--MNK-----QCNLAICLMHMNRVTEAKSLLQAVKISA 222 (575)
Q Consensus 168 aY~~qGryeEAe~~yrkALeidPd--n~~-----~~NLA~iy~~qGr~eEAi~lLekALel~ 222 (575)
+....|++.....+..+|-.+-.. +.. .+--|..++.+++|.+|-.+|-.++...
T Consensus 82 v~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 82 VAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 999999999999999998876543 232 2345888899999999999997776543
No 290
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=86.83 E-value=10 Score=41.48 Aligned_cols=149 Identities=13% Similarity=0.013 Sum_probs=78.4
Q ss_pred cCChHHHHHHHHHHHH-cCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHH
Q 038048 67 DKDPSRAVSLFWAAIN-AGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARS 145 (575)
Q Consensus 67 ~kd~eeAi~lf~kAL~-l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~s 145 (575)
.||.++|+..+..++. ....+++.+.-+|-+|.+. |.++-......++.++..+.+....
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~--~~~s~~~d~~~ldkAi~~Y~kgFe~----------------- 255 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRIYKDL--FLESNFTDRESLDKAIEWYRKGFEI----------------- 255 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHH--HHHcCccchHHHHHHHHHHHHHHcC-----------------
Confidence 5899999999988554 4556677888889888765 2222111111234444444433321
Q ss_pred hchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------H---hCCCCHH--HHHHHHHHHHcCCHHHHH
Q 038048 146 QGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKAL--------S---LGVDMNK--QCNLAICLMHMNRVTEAK 212 (575)
Q Consensus 146 qg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkAL--------e---idPdn~~--~~NLA~iy~~qGr~eEAi 212 (575)
+|+.. .=.|++.++.-.|.-.+...-.++.. + +.+...- ...++.+..-.|++++|+
T Consensus 256 ---------~~~~Y-~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~ 325 (374)
T PF13281_consen 256 ---------EPDYY-SGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAI 325 (374)
T ss_pred ---------Ccccc-chHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHH
Confidence 11111 11222222222222111111111111 0 1122111 457888889999999999
Q ss_pred HHHHHHHHHcCCCCCChhHHHHHHHHHHHHHHhccc
Q 038048 213 SLLQAVKISAGNRQMDTSYSRSFERAIQMLTELESP 248 (575)
Q Consensus 213 ~lLekALel~P~n~~~~~~l~slerA~elL~ele~a 248 (575)
+.+++++.+.|..|.. ++.-+-..++..+...
T Consensus 326 ~a~e~~~~l~~~~W~l----~St~~ni~Li~~~~~~ 357 (374)
T PF13281_consen 326 QAAEKAFKLKPPAWEL----ESTLENIKLIRHFRKR 357 (374)
T ss_pred HHHHHHhhcCCcchhH----HHHHHHHHHHHHHhcC
Confidence 9999999999988843 3333334444444433
No 291
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.41 E-value=3.8 Score=39.72 Aligned_cols=67 Identities=12% Similarity=-0.038 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 160 RILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 160 ~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
..+..+..+-...++.++++.++...--+.|.++. ..--|.+++..|+|.+|+.+|+.+....|..+
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p 78 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFP 78 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCh
Confidence 46677788888999999999999999999999999 88899999999999999999999877665443
No 292
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=86.03 E-value=2.2 Score=45.59 Aligned_cols=52 Identities=17% Similarity=0.109 Sum_probs=46.7
Q ss_pred HHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHH
Q 038048 65 LIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIE 116 (575)
Q Consensus 65 l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLe 116 (575)
..+|+.++|..+|+.|+.++|.+++++..+|......++.-+|-.+|.+++.
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALt 178 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALT 178 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeee
Confidence 5678999999999999999999999999999999988888888888777654
No 293
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=85.89 E-value=9.6 Score=43.72 Aligned_cols=76 Identities=21% Similarity=0.076 Sum_probs=59.7
Q ss_pred HHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCCHH-HHHH------HHHHHHcCCHHHHHHHHHHHHHHc
Q 038048 151 QITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRK-ALSLGVDMNK-QCNL------AICLMHMNRVTEAKSLLQAVKISA 222 (575)
Q Consensus 151 aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrk-ALeidPdn~~-~~NL------A~iy~~qGr~eEAi~lLekALel~ 222 (575)
.+.++|++..++.+||.++...|..-.|...+.. ++.+.|++.. ...+ +..+..+|+..++...++++.++.
T Consensus 93 ~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~ 172 (620)
T COG3914 93 PLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLL 172 (620)
T ss_pred hHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh
Confidence 3566888888889998777777777666666655 8888888887 4444 888888899999999999988888
Q ss_pred CCCC
Q 038048 223 GNRQ 226 (575)
Q Consensus 223 P~n~ 226 (575)
|.+.
T Consensus 173 p~~~ 176 (620)
T COG3914 173 PKYP 176 (620)
T ss_pred hhhh
Confidence 8764
No 294
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=85.66 E-value=2.3 Score=30.98 Aligned_cols=32 Identities=22% Similarity=0.332 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCCC
Q 038048 161 ILGNLAWAYMQQNNFEMAEQY--YRKALSLGVDM 192 (575)
Q Consensus 161 a~~nLG~aY~~qGryeEAe~~--yrkALeidPdn 192 (575)
.++.+|..+..+|++++|+.. |+-+..+++.|
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 456677778888888888888 44666666654
No 295
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=85.41 E-value=4.1 Score=39.65 Aligned_cols=64 Identities=14% Similarity=0.132 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Q 038048 160 RILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK----QCNLAICLMHMNRVTEAKSLLQAVKISAG 223 (575)
Q Consensus 160 ~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~----~~NLA~iy~~qGr~eEAi~lLekALel~P 223 (575)
.++..+|..|.+.|++++|++.|.++.+..-.... .+++..+.+..|++..+..++.++-.+-.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~ 104 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIE 104 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 48999999999999999999999998886544332 56888899999999999999999988644
No 296
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.37 E-value=43 Score=33.54 Aligned_cols=143 Identities=13% Similarity=0.043 Sum_probs=91.2
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHH
Q 038048 62 HIQLIDKDPSRAVSLFWAAINAGDRV--DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVK 139 (575)
Q Consensus 62 ~l~l~~kd~eeAi~lf~kAL~l~p~~--~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nl 139 (575)
......+..++|+.-|...-..+-.. .-+....|.+..+.|+-++|+..+...-.
T Consensus 66 L~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~----------------------- 122 (221)
T COG4649 66 LKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAA----------------------- 122 (221)
T ss_pred HHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhc-----------------------
Confidence 33456778888988887655544333 23677889999999999999987422100
Q ss_pred HHHHHHhchhhHHhhcCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---H-HHHHHHHHHHcCCHHHHHH
Q 038048 140 TKMARSQGKKIQITVEQEKS--RILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMN---K-QCNLAICLMHMNRVTEAKS 213 (575)
Q Consensus 140 a~al~sqg~k~aL~L~Pd~~--~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~---~-~~NLA~iy~~qGr~eEAi~ 213 (575)
..--|... .+-..-+.++...|-|++-....+.. .- +.++ . .-.||..-++.|++..|.+
T Consensus 123 ------------dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepL-a~-d~n~mR~sArEALglAa~kagd~a~A~~ 188 (221)
T COG4649 123 ------------DTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPL-AG-DGNPMRHSAREALGLAAYKAGDFAKAKS 188 (221)
T ss_pred ------------cCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhc-cC-CCChhHHHHHHHHhHHHHhccchHHHHH
Confidence 00011111 13445567888889998876655432 22 2232 2 5579999999999999999
Q ss_pred HHHHHHHHcCCCCCChhHHHHHHHHHHHHHHhcc
Q 038048 214 LLQAVKISAGNRQMDTSYSRSFERAIQMLTELES 247 (575)
Q Consensus 214 lLekALel~P~n~~~~~~l~slerA~elL~ele~ 247 (575)
.|..+.. +-..+ -...+||+-++..+.+
T Consensus 189 ~F~qia~-Da~ap-----rnirqRAq~mldlI~s 216 (221)
T COG4649 189 WFVQIAN-DAQAP-----RNIRQRAQIMLDLIDS 216 (221)
T ss_pred HHHHHHc-cccCc-----HHHHHHHHHHHHHHhc
Confidence 9998877 22111 1234678877776654
No 297
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=85.32 E-value=41 Score=36.64 Aligned_cols=141 Identities=11% Similarity=0.088 Sum_probs=82.2
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHH
Q 038048 63 IQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKM 142 (575)
Q Consensus 63 l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~a 142 (575)
....+.++..-++.-..|++++|.-+.+|..||.- ..--.-+|+.++..++......+. ....
T Consensus 193 ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr---------------~sqq 255 (556)
T KOG3807|consen 193 KAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYR---------------QSQQ 255 (556)
T ss_pred HHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHh---------------hHHH
Confidence 34556677777788888899999888777766542 222233344433333222222221 1111
Q ss_pred HHHhchh-hHHhhcCCcHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHcCCHHHHHHHHH
Q 038048 143 ARSQGKK-IQITVEQEKSR--ILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK---QCNLAICLMHMNRVTEAKSLLQ 216 (575)
Q Consensus 143 l~sqg~k-~aL~L~Pd~~~--a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~---~~NLA~iy~~qGr~eEAi~lLe 216 (575)
...++.. -+......+.. +--.|+.+-.++|+..||++.++...+-.|=... +-||-.++++..-|.+...++-
T Consensus 256 ~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLa 335 (556)
T KOG3807|consen 256 CQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLA 335 (556)
T ss_pred HhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222210 00111111122 3356788999999999999999999988883322 5588888888887777777666
Q ss_pred HHHH
Q 038048 217 AVKI 220 (575)
Q Consensus 217 kALe 220 (575)
+.=+
T Consensus 336 kYDd 339 (556)
T KOG3807|consen 336 KYDD 339 (556)
T ss_pred hhcc
Confidence 5443
No 298
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=84.21 E-value=1.3 Score=29.54 Aligned_cols=23 Identities=30% Similarity=0.340 Sum_probs=20.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 038048 195 QCNLAICLMHMNRVTEAKSLLQA 217 (575)
Q Consensus 195 ~~NLA~iy~~qGr~eEAi~lLek 217 (575)
.++||.+|..+|++++|+..+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHhC
Confidence 67899999999999999998863
No 299
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=83.23 E-value=33 Score=36.33 Aligned_cols=149 Identities=11% Similarity=-0.005 Sum_probs=82.9
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHH-HHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch-----
Q 038048 75 SLFWAAINAGDRVDSALKDMAVVMKQLDRSDEA-IEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK----- 148 (575)
Q Consensus 75 ~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEA-ie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~----- 148 (575)
.-|.+.+..+|.+..++..+...-...-..... ........+..+.+|++++...+........+.........
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 356778888999888887776655544332221 11112223445556666654332222222211111111111
Q ss_pred ---hhHHhhcCCcHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCC----C---------C-HH-----HHHHHHHHH
Q 038048 149 ---KIQITVEQEKSRILGNLAWAYM---QQNNFEMAEQYYRKALSLGV----D---------M-NK-----QCNLAICLM 203 (575)
Q Consensus 149 ---k~aL~L~Pd~~~a~~nLG~aY~---~qGryeEAe~~yrkALeidP----d---------n-~~-----~~NLA~iy~ 203 (575)
+.++..+|+...+|...-.... ..-.+.+....|.++|..-. + . .. ..++...+.
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~ 165 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLR 165 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 3345667777776644432222 22357788888888776421 1 0 11 246777888
Q ss_pred HcCCHHHHHHHHHHHHHHcC
Q 038048 204 HMNRVTEAKSLLQAVKISAG 223 (575)
Q Consensus 204 ~qGr~eEAi~lLekALel~P 223 (575)
..|-.+.|+.+++-+++.+=
T Consensus 166 ~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 166 QAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HCCchHHHHHHHHHHHHHHc
Confidence 99999999999999999864
No 300
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.57 E-value=7.7 Score=37.35 Aligned_cols=56 Identities=18% Similarity=0.238 Sum_probs=47.0
Q ss_pred hcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHH
Q 038048 154 VEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVT 209 (575)
Q Consensus 154 L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~e 209 (575)
+.|....+-...|+++...|+|.+|+..|+...+-.+..+. .--++.|+.-+|+.+
T Consensus 39 LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 39 LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence 47888888888899999999999999999998888888777 777888888888764
No 301
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=82.36 E-value=5.5 Score=34.36 Aligned_cols=59 Identities=20% Similarity=0.054 Sum_probs=47.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HH---HHHHHHHHcCCHHHHHHHHHHHHHH
Q 038048 163 GNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QC---NLAICLMHMNRVTEAKSLLQAVKIS 221 (575)
Q Consensus 163 ~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~---NLA~iy~~qGr~eEAi~lLekALel 221 (575)
..-|.=++.+.+.++|+..+++||+..++... +. .|..+|.+.|+|.+++++.-.=+++
T Consensus 10 ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 10 IEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566999999999999999999999887 44 4566789999999998887665554
No 302
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=82.10 E-value=2.1 Score=31.72 Aligned_cols=29 Identities=31% Similarity=0.410 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 038048 161 ILGNLAWAYMQQNNFEMAEQYYRKALSLG 189 (575)
Q Consensus 161 a~~nLG~aY~~qGryeEAe~~yrkALeid 189 (575)
+|..||.+-+..++|++|+.-|+++|+|.
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 56677777777777777777777777664
No 303
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=81.03 E-value=3.2 Score=41.71 Aligned_cols=55 Identities=18% Similarity=0.128 Sum_probs=32.3
Q ss_pred hHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH
Q 038048 150 IQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMH 204 (575)
Q Consensus 150 ~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~ 204 (575)
+++.+.|+....|+.||.++...|+.-+|+=+|-+++...--++. ..||..++.+
T Consensus 7 ~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 7 KAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 355666666666666666666666666666666666655444444 6666666655
No 304
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=80.90 E-value=6.3 Score=39.58 Aligned_cols=66 Identities=17% Similarity=0.319 Sum_probs=49.3
Q ss_pred hhhHhhcCCCCCcHHHHHHHHH-HHcCChHHHHHHHHHHHHcCCC----cHHHHHHHHHHHHHCCCHHHHH
Q 038048 43 IFHVIHKVPSGDSPYVRAKHIQ-LIDKDPSRAVSLFWAAINAGDR----VDSALKDMAVVMKQLDRSDEAI 108 (575)
Q Consensus 43 ~y~~~~~~ps~d~~yarA~~l~-l~~kd~eeAi~lf~kAL~l~p~----~~~Al~nLA~iy~qqGrydEAi 108 (575)
.|-.....+..+.+-+.....- ....|+++|+.+|.++|++.+. +++.+..||.+|.++|++++|-
T Consensus 128 ~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 128 RFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3444555555566665544443 4477999999999999987543 4789999999999999999985
No 305
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.67 E-value=1.1e+02 Score=34.93 Aligned_cols=66 Identities=18% Similarity=0.310 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHH-----HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 161 ILGNLAWAYMQQNNFEMAEQYYRKALSLGV--DMNK-----QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 161 a~~nLG~aY~~qGryeEAe~~yrkALeidP--dn~~-----~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
+++-.|...+.++++.||...+++.|+... |+.. ..-|+.+....|+..|+..+..-++.+...-+
T Consensus 447 ~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~ 519 (629)
T KOG2300|consen 447 ILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIP 519 (629)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCC
Confidence 667778888889999999999999988761 1111 23578888889999999998888888765544
No 306
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=80.57 E-value=5.5 Score=41.62 Aligned_cols=66 Identities=15% Similarity=0.104 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 161 ILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 161 a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
...|+=.+|...++++.|..+..+.+.++|+++. .-.-|.+|..+|-+.-|+.-+...++..|+++
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~ 249 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDP 249 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCch
Confidence 5567778999999999999999999999999998 88999999999999999999999999999876
No 307
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.52 E-value=1.2e+02 Score=35.33 Aligned_cols=152 Identities=14% Similarity=0.110 Sum_probs=89.9
Q ss_pred ChHHHHHHHHHHHHc------------CCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHH---------
Q 038048 69 DPSRAVSLFWAAINA------------GDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLK--------- 127 (575)
Q Consensus 69 d~eeAi~lf~kAL~l------------~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~--------- 127 (575)
-|++|...|.-|... .|.....+..+|.+...+|+.+-|..+ ++.++..++.++.
T Consensus 253 sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadL----ieR~Ly~~d~a~hp~F~~~sg~ 328 (665)
T KOG2422|consen 253 SYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADL----IERGLYVFDRALHPNFIPFSGN 328 (665)
T ss_pred HHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHH----HHHHHHHHHHHhcccccccccc
Confidence 356777767666543 344567788999999999999999988 3334444444432
Q ss_pred -----hhHHHHHHHhHHHHH---HHHhch--------hhHHhhcCC-cHH-HHHHHHHHHHHcCCHHHHHHHHHHH----
Q 038048 128 -----NIEEGIAFAGVKTKM---ARSQGK--------KIQITVEQE-KSR-ILGNLAWAYMQQNNFEMAEQYYRKA---- 185 (575)
Q Consensus 128 -----l~~~a~a~~~nla~a---l~sqg~--------k~aL~L~Pd-~~~-a~~nLG~aY~~qGryeEAe~~yrkA---- 185 (575)
..+..-.++..+... +...|. +.++.++|. ++- +.+.+-...++..+|+==|..++..
T Consensus 329 cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n 408 (665)
T KOG2422|consen 329 CRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMN 408 (665)
T ss_pred ccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhc
Confidence 111111222222211 122222 456777776 544 3333444445566666666666655
Q ss_pred -HHhCCCCHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHcCC
Q 038048 186 -LSLGVDMNKQCNLAICLMHMNR---VTEAKSLLQAVKISAGN 224 (575)
Q Consensus 186 -LeidPdn~~~~NLA~iy~~qGr---~eEAi~lLekALel~P~ 224 (575)
|.+-|+..--..||..|..... -..|...+.+|+...|.
T Consensus 409 ~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 409 KLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred cHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 4445666656677777777766 56788888888888773
No 308
>PRK10941 hypothetical protein; Provisional
Probab=80.03 E-value=9.5 Score=39.83 Aligned_cols=68 Identities=10% Similarity=0.061 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHH
Q 038048 90 ALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAY 169 (575)
Q Consensus 90 Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY 169 (575)
.+.+|=.+|.+.++++.|+.+. ...+.+.|+++.-+-..|.+|
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~-------------------------------------e~ll~l~P~dp~e~RDRGll~ 225 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRAS-------------------------------------EALLQFDPEDPYEIRDRGLIY 225 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHH-------------------------------------HHHHHhCCCCHHHHHHHHHHH
Confidence 4678888999999999999872 134678999999889999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048 170 MQQNNFEMAEQYYRKALSLGVDMNK 194 (575)
Q Consensus 170 ~~qGryeEAe~~yrkALeidPdn~~ 194 (575)
.++|.+..|..-|+.-++..|+.+.
T Consensus 226 ~qL~c~~~A~~DL~~fl~~~P~dp~ 250 (269)
T PRK10941 226 AQLDCEHVALSDLSYFVEQCPEDPI 250 (269)
T ss_pred HHcCCcHHHHHHHHHHHHhCCCchh
Confidence 9999999999999999999999997
No 309
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=79.56 E-value=2.5 Score=43.57 Aligned_cols=44 Identities=16% Similarity=0.124 Sum_probs=40.6
Q ss_pred HHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048 151 QITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK 194 (575)
Q Consensus 151 aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~ 194 (575)
++.+.|+....|+.+|....+.|+++.|.+.|++.|+++|++..
T Consensus 21 al~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 21 ALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred HhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 35678889999999999999999999999999999999998876
No 310
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.53 E-value=56 Score=34.80 Aligned_cols=51 Identities=24% Similarity=0.300 Sum_probs=41.4
Q ss_pred HHcCChHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHCCCHHHHHHHHhcCH
Q 038048 65 LIDKDPSRAVSLFWAAINAGDRVD----SALKDMAVVMKQLDRSDEAIEARSGRI 115 (575)
Q Consensus 65 l~~kd~eeAi~lf~kAL~l~p~~~----~Al~nLA~iy~qqGrydEAie~~~gaL 115 (575)
+...++++|+.-|++++++.+.-. .|+..+-.++..+|+|++-++.|..-+
T Consensus 38 l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 38 LKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred ccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 355689999999999999876543 377888999999999999998854443
No 311
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=78.07 E-value=74 Score=33.73 Aligned_cols=128 Identities=12% Similarity=0.067 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCH-HHHHHHHhcCHHHHHHHHHHHHHhhHHHHH
Q 038048 56 PYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRS-DEAIEARSGRIEEEIELLQNKLKNIEEGIA 134 (575)
Q Consensus 56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGry-dEAie~~~gaLeeAi~lL~~~L~l~~~a~a 134 (575)
.|++| +...+..-..|+.+.+.+|.++|.+...+...-.++..++.. .+-+++...
T Consensus 47 ~YfRA--I~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~e--------------------- 103 (318)
T KOG0530|consen 47 DYFRA--IIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDE--------------------- 103 (318)
T ss_pred HHHHH--HHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHH---------------------
Confidence 45555 224455667889999999999998876665444444443322 111121111
Q ss_pred HHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHH
Q 038048 135 FAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFE-MAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAK 212 (575)
Q Consensus 135 ~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGrye-EAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi 212 (575)
.+.-+|.+..+|...-.+....|++. .-+.+.+.+|..+-.|.. +...--++..-+.++.-+
T Consensus 104 ----------------I~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL 167 (318)
T KOG0530|consen 104 ----------------IIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDEL 167 (318)
T ss_pred ----------------HHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHH
Confidence 12224555555555555555555555 555555555555555555 444444555555555555
Q ss_pred HHHHHHHHHc
Q 038048 213 SLLQAVKISA 222 (575)
Q Consensus 213 ~lLekALel~ 222 (575)
.+..++|+.+
T Consensus 168 ~y~~~Lle~D 177 (318)
T KOG0530|consen 168 AYADELLEED 177 (318)
T ss_pred HHHHHHHHHh
Confidence 5555555543
No 312
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=77.84 E-value=90 Score=32.22 Aligned_cols=65 Identities=11% Similarity=0.071 Sum_probs=45.4
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHH----------------HHhCCCCHH-HHH-HHHHHHHcCCHHHHHHHHHHH
Q 038048 157 EKSRILGNLAWAYMQQNNFEMAEQYYRKA----------------LSLGVDMNK-QCN-LAICLMHMNRVTEAKSLLQAV 218 (575)
Q Consensus 157 d~~~a~~nLG~aY~~qGryeEAe~~yrkA----------------LeidPdn~~-~~N-LA~iy~~qGr~eEAi~lLekA 218 (575)
.++..+..+|..|.+.|++.+|+.+|-.. .+-.|.... .+. ...-|.-.|+...|...+...
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f 167 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTF 167 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 45679999999999999999999887521 122455555 443 444588999999999988877
Q ss_pred HHH
Q 038048 219 KIS 221 (575)
Q Consensus 219 Lel 221 (575)
++.
T Consensus 168 ~~~ 170 (260)
T PF04190_consen 168 TSK 170 (260)
T ss_dssp HHH
T ss_pred HHH
Confidence 766
No 313
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.65 E-value=1.2e+02 Score=34.85 Aligned_cols=64 Identities=14% Similarity=0.098 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHH--HHHHHHHHHHcCC-HHHHHHHHHHHHHHcCC
Q 038048 161 ILGNLAWAYMQQNNFEMAEQYYRKALSL------GVDMNK--QCNLAICLMHMNR-VTEAKSLLQAVKISAGN 224 (575)
Q Consensus 161 a~~nLG~aY~~qGryeEAe~~yrkALei------dPdn~~--~~NLA~iy~~qGr-~eEAi~lLekALel~P~ 224 (575)
-+..+|.++..+|+...|..+|..+++. ++--.. +|.||.+|+++|. ..+|..++.+|-+...+
T Consensus 451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 4456699999999999999999999843 122222 7899999999999 99999999999886543
No 314
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=77.57 E-value=58 Score=33.11 Aligned_cols=115 Identities=19% Similarity=0.146 Sum_probs=73.6
Q ss_pred HcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCC----CHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHH
Q 038048 66 IDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLD----RSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTK 141 (575)
Q Consensus 66 ~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqG----rydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~ 141 (575)
...++..|..+|..+-.... ..+...+|.+|.... +..+|+.++..
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~--~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~---------------------------- 102 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGD--AAALALLGQMYGAGKGVSRDKTKAADWYRC---------------------------- 102 (292)
T ss_pred ccccHHHHHHHHHHhhhcCC--hHHHHHHHHHHHhccCccccHHHHHHHHHH----------------------------
Confidence 45677888888887765332 256777777776553 24444444321
Q ss_pred HHHHhchhhHHhhcCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCC-HH-HHHHHHHHHHcC-------CH
Q 038048 142 MARSQGKKIQITVEQEKSRILGNLAWAYMQ----QNNFEMAEQYYRKALSLGVDM-NK-QCNLAICLMHMN-------RV 208 (575)
Q Consensus 142 al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~----qGryeEAe~~yrkALeidPdn-~~-~~NLA~iy~~qG-------r~ 208 (575)
..+...+.+.++||.+|.. ..++.+|..+|++|.+..-.. .. .++||.+|..-+ ..
T Consensus 103 -----------~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~ 171 (292)
T COG0790 103 -----------AAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDD 171 (292)
T ss_pred -----------HhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHH
Confidence 2244556677888888877 458888999999888875443 23 777777776642 22
Q ss_pred HHHHHHHHHHHHH
Q 038048 209 TEAKSLLQAVKIS 221 (575)
Q Consensus 209 eEAi~lLekALel 221 (575)
..|...|.++-..
T Consensus 172 ~~A~~~~~~aa~~ 184 (292)
T COG0790 172 KKALYLYRKAAEL 184 (292)
T ss_pred HhHHHHHHHHHHh
Confidence 2577777776654
No 315
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.98 E-value=24 Score=39.98 Aligned_cols=55 Identities=25% Similarity=0.165 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHcCCHHHHHHHH
Q 038048 161 ILGNLAWAYMQQN-NFEMAEQYYRKALSLGVDMNK-----QCNLAICLMHMNRVTEAKSLL 215 (575)
Q Consensus 161 a~~nLG~aY~~qG-ryeEAe~~yrkALeidPdn~~-----~~NLA~iy~~qGr~eEAi~lL 215 (575)
++..|+.+|.... .+..|...+++|+++..+++. .+-||.+..-..++.-|++++
T Consensus 90 a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elL 150 (629)
T KOG2300|consen 90 AASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELL 150 (629)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHH
Confidence 5556677777666 677777777777777766665 234677777777777777664
No 316
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=76.29 E-value=9.4 Score=38.40 Aligned_cols=55 Identities=22% Similarity=0.143 Sum_probs=45.1
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HH-HHHHHHHHHHcCCHHHHH
Q 038048 157 EKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDM----NK-QCNLAICLMHMNRVTEAK 212 (575)
Q Consensus 157 d~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn----~~-~~NLA~iy~~qGr~eEAi 212 (575)
+.+...+.||..|. ..+.++|+.+|.++|++.+.+ +. ...||.+|..+|++++|-
T Consensus 139 ~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 139 ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 45667788887776 779999999999999987544 34 778999999999999885
No 317
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=75.75 E-value=53 Score=38.91 Aligned_cols=113 Identities=19% Similarity=0.157 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHhc--CHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHH
Q 038048 89 SALKDMAVVMKQLDRSDEAIEARSG--RIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLA 166 (575)
Q Consensus 89 ~Al~nLA~iy~qqGrydEAie~~~g--aLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG 166 (575)
.|+.++|..+...-.+++|.++|.. ..+..++.+-.. ..++.+- ....--|++...+-.+|
T Consensus 797 ~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~l--------e~f~~LE---------~la~~Lpe~s~llp~~a 859 (1189)
T KOG2041|consen 797 DAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRL--------ELFGELE---------VLARTLPEDSELLPVMA 859 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHH--------HhhhhHH---------HHHHhcCcccchHHHHH
Confidence 4788899999999999999988543 233222222111 0011111 11222466667777788
Q ss_pred HHHHHcCCHHHHHHHHHH-------------------HHHhCC-----CCHH-HHHHHHHHHHcCCHHHHHHHHHHH
Q 038048 167 WAYMQQNNFEMAEQYYRK-------------------ALSLGV-----DMNK-QCNLAICLMHMNRVTEAKSLLQAV 218 (575)
Q Consensus 167 ~aY~~qGryeEAe~~yrk-------------------ALeidP-----dn~~-~~NLA~iy~~qGr~eEAi~lLekA 218 (575)
..+...|.-++|++.|.+ |+++.. +-.. ....+.-++..++..||++..+++
T Consensus 860 ~mf~svGMC~qAV~a~Lr~s~pkaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 860 DMFTSVGMCDQAVEAYLRRSLPKAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred HHHHhhchHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 887777877777777653 333322 1112 223455566777888888877765
No 318
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=75.61 E-value=7.7 Score=44.15 Aligned_cols=96 Identities=14% Similarity=-0.024 Sum_probs=64.0
Q ss_pred HHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHH
Q 038048 65 LIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMAR 144 (575)
Q Consensus 65 l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~ 144 (575)
++......|+..|-++++.-|.....+.+.|.+|++.+=...+..+... .
T Consensus 385 ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrD-----------c------------------- 434 (758)
T KOG1310|consen 385 LYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRD-----------C------------------- 434 (758)
T ss_pred hhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHh-----------H-------------------
Confidence 4555667788888888887777666666666666554333222222100 0
Q ss_pred HhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048 145 SQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK 194 (575)
Q Consensus 145 sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~ 194 (575)
..++.++|..-.+++.|+.++..++++.+|+.+...+....|.+..
T Consensus 435 ----h~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a 480 (758)
T KOG1310|consen 435 ----HVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDVA 480 (758)
T ss_pred ----HhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhh
Confidence 1345677777778999999999999999999888877777775554
No 319
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=75.45 E-value=22 Score=37.69 Aligned_cols=76 Identities=7% Similarity=-0.108 Sum_probs=60.7
Q ss_pred HHhhcCCcHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHH
Q 038048 151 QITVEQEKSRILGNLAWAYMQQNN------------FEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQA 217 (575)
Q Consensus 151 aL~L~Pd~~~a~~nLG~aY~~qGr------------yeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLek 217 (575)
.+.-+|++..+|..+.......-. .+..+.+|++||+.+|++.. +..+-.+..+....++....+++
T Consensus 11 ~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~ 90 (321)
T PF08424_consen 11 RVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEE 90 (321)
T ss_pred HHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 355688888888888754444432 56778999999999999998 77777777888899999999999
Q ss_pred HHHHcCCCC
Q 038048 218 VKISAGNRQ 226 (575)
Q Consensus 218 ALel~P~n~ 226 (575)
++..+|.+.
T Consensus 91 ~l~~~~~~~ 99 (321)
T PF08424_consen 91 LLFKNPGSP 99 (321)
T ss_pred HHHHCCCCh
Confidence 999988764
No 320
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=75.13 E-value=25 Score=40.50 Aligned_cols=56 Identities=14% Similarity=0.058 Sum_probs=40.1
Q ss_pred HhhcCCcHHHHHH------HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCC
Q 038048 152 ITVEQEKSRILGN------LAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNR 207 (575)
Q Consensus 152 L~L~Pd~~~a~~n------LG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr 207 (575)
..+.|.+..++.. +|.....+|+..+|.....+++.+.|.++. ...+.....++-.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs 191 (620)
T COG3914 129 EWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCS 191 (620)
T ss_pred HhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhcc
Confidence 3445555554444 499999999999999999999999999976 4444444333333
No 321
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=74.99 E-value=14 Score=31.97 Aligned_cols=58 Identities=9% Similarity=0.046 Sum_probs=43.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCcHH---HHHHHHHHHHHCCCHHHHHHHHhcCHHH
Q 038048 60 AKHIQLIDKDPSRAVSLFWAAINAGDRVDS---ALKDMAVVMKQLDRSDEAIEARSGRIEE 117 (575)
Q Consensus 60 A~~l~l~~kd~eeAi~lf~kAL~l~p~~~~---Al~nLA~iy~qqGrydEAie~~~gaLee 117 (575)
.+.......+.++|+..++++++.-++... ++-.|..+|.+.|+|.+++++....++.
T Consensus 12 ~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 12 KGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333455788999999999998766543 5667788999999999999985554443
No 322
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=74.07 E-value=18 Score=39.13 Aligned_cols=75 Identities=13% Similarity=0.021 Sum_probs=62.5
Q ss_pred HhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C---------------------CCCHH----HHHHHHH
Q 038048 152 ITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSL-----G---------------------VDMNK----QCNLAIC 201 (575)
Q Consensus 152 L~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALei-----d---------------------Pdn~~----~~NLA~i 201 (575)
+..+|-+.+++..++.++..+|+++.|..+.++||=. . ++|-. .+.....
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~ 112 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS 112 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999743 1 22322 2355778
Q ss_pred HHHcCCHHHHHHHHHHHHHHcCC-CC
Q 038048 202 LMHMNRVTEAKSLLQAVKISAGN-RQ 226 (575)
Q Consensus 202 y~~qGr~eEAi~lLekALel~P~-n~ 226 (575)
+.+.|-+.-|.++.+-++.++|. |+
T Consensus 113 L~~RG~~rTAlE~~KlLlsLdp~~DP 138 (360)
T PF04910_consen 113 LGRRGCWRTALEWCKLLLSLDPDEDP 138 (360)
T ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCc
Confidence 89999999999999999999998 65
No 323
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=73.84 E-value=12 Score=36.09 Aligned_cols=64 Identities=16% Similarity=0.060 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 038048 161 ILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGN 224 (575)
Q Consensus 161 a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~ 224 (575)
.+..+..+-...+++++++.++...--+.|++.. ..--|.+++..|+|.||+.+|+.+.+..+.
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~ 76 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGA 76 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCC
Confidence 4455556666699999999999999999999999 788899999999999999999998775543
No 324
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=73.59 E-value=37 Score=32.45 Aligned_cols=35 Identities=14% Similarity=0.116 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048 160 RILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK 194 (575)
Q Consensus 160 ~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~ 194 (575)
+.++.|+..+.++++|++|+.+.+..|+..|+|..
T Consensus 72 e~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 72 ECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred hhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 47899999999999999999999999999999986
No 325
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=73.07 E-value=83 Score=35.13 Aligned_cols=66 Identities=11% Similarity=0.080 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCH--H-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048 160 RILGNLAWAYMQQNNFEMAEQYYRKALSLG--VDMN--K-QCNLAICLMHMNRVTEAKSLLQAVKISAGNR 225 (575)
Q Consensus 160 ~a~~nLG~aY~~qGryeEAe~~yrkALeid--Pdn~--~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n 225 (575)
...+.|-..|+.-+.|+.|.....++.--+ -++. . .+-+|.+..-+++|..|.++|-.++...|.+
T Consensus 210 vLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 210 VLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 355666799999999999999888876222 2222 2 5678999999999999999999999998864
No 326
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=71.99 E-value=11 Score=27.53 Aligned_cols=31 Identities=13% Similarity=0.030 Sum_probs=24.4
Q ss_pred HHHHHHHHHHcCCHHHHHHH--HHHHHHHcCCC
Q 038048 195 QCNLAICLMHMNRVTEAKSL--LQAVKISAGNR 225 (575)
Q Consensus 195 ~~NLA~iy~~qGr~eEAi~l--LekALel~P~n 225 (575)
++.+|..+..+|++++|+.+ |.-+..+++.|
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 67899999999999999999 44777776643
No 327
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.25 E-value=84 Score=31.52 Aligned_cols=109 Identities=14% Similarity=0.112 Sum_probs=73.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCC--c--HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHH
Q 038048 58 VRAKHIQLIDKDPSRAVSLFWAAINAGDR--V--DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGI 133 (575)
Q Consensus 58 arA~~l~l~~kd~eeAi~lf~kAL~l~p~--~--~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~ 133 (575)
+++..+....|+-..|+..|..+-.-.+. . ..+...-|.++...|-|++-......
T Consensus 98 mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvep-------------------- 157 (221)
T COG4649 98 MRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEP-------------------- 157 (221)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhh--------------------
Confidence 45666777889999999999876554322 1 23566678889999999887654100
Q ss_pred HHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHH
Q 038048 134 AFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLM 203 (575)
Q Consensus 134 a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~ 203 (575)
+...-+|--..+---||.+-++.|++..|...|..... +-+.+. ..+.+.+.+
T Consensus 158 ----------------La~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~ml 211 (221)
T COG4649 158 ----------------LAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIML 211 (221)
T ss_pred ----------------ccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHH
Confidence 00112333344667899999999999999999999876 444443 444454443
No 328
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=71.20 E-value=1e+02 Score=37.39 Aligned_cols=60 Identities=22% Similarity=0.066 Sum_probs=52.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Q 038048 164 NLAWAYMQQNNFEMAEQYYRKALSLGVDMNK------QCNLAICLMHMNRVTEAKSLLQAVKISAG 223 (575)
Q Consensus 164 nLG~aY~~qGryeEAe~~yrkALeidPdn~~------~~NLA~iy~~qGr~eEAi~lLekALel~P 223 (575)
--|.+....|++++|+++.+.++..-|.+.. ..++|.+.+-.|++++|..+...+.+...
T Consensus 463 L~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~ 528 (894)
T COG2909 463 LRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMAR 528 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHH
Confidence 3468899999999999999999998887663 56899999999999999999999988744
No 329
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=70.81 E-value=1.4e+02 Score=31.67 Aligned_cols=153 Identities=16% Similarity=0.088 Sum_probs=89.7
Q ss_pred HcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHH----hhH-HHHHHHhHHH
Q 038048 66 IDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLK----NIE-EGIAFAGVKT 140 (575)
Q Consensus 66 ~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~----l~~-~a~a~~~nla 140 (575)
.++++.+.+...++.+..+|--.+.++..+.++.++| ++++..+... ....+-..+- +.. ++..|...-.
T Consensus 111 ~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG-~~~~a~aI~~----el~~fL~RlP~L~~L~F~DGtPFad~~T 185 (301)
T TIGR03362 111 AQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG-YAAVAQAIRD----ELAAFLERLPGLLELKFSDGTPFADDET 185 (301)
T ss_pred hCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC-CHHHHHHHHH----HHHHHHHhCcChhhcccCCCCCCCCHHH
Confidence 3456677888888888888877788888999999999 5665554222 1111111110 000 0000111111
Q ss_pred HHHHHhch-h------hHHhhcC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHcCC
Q 038048 141 KMARSQGK-K------IQITVEQ--EKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK----QCNLAICLMHMNR 207 (575)
Q Consensus 141 ~al~sqg~-k------~aL~L~P--d~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~----~~NLA~iy~~qGr 207 (575)
........ . ..+.... .+......-+..+...|..++|+..++..+.....--. .+-++.++...|+
T Consensus 186 ~~WL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~g~ 265 (301)
T TIGR03362 186 RAWLAQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQAGK 265 (301)
T ss_pred HHHHHhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHcCC
Confidence 11100000 0 0000001 11222334468888999999999999987775554443 5578999999999
Q ss_pred HHHHHHHHHHHHHHcC
Q 038048 208 VTEAKSLLQAVKISAG 223 (575)
Q Consensus 208 ~eEAi~lLekALel~P 223 (575)
++-|..+|+.+.+.-.
T Consensus 266 ~~lA~~ll~~L~~~~~ 281 (301)
T TIGR03362 266 AELAQQLYAALDQQIQ 281 (301)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999887543
No 330
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=70.31 E-value=27 Score=33.43 Aligned_cols=61 Identities=15% Similarity=0.083 Sum_probs=45.4
Q ss_pred HHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038048 161 ILGNLA-WAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKIS 221 (575)
Q Consensus 161 a~~nLG-~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel 221 (575)
-|..+| .++-.+|+-++=...++....-..-++. .+.+|.+|.+.|...+|-.++.+|-+.
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 445666 6778899999999999998875566667 899999999999999999999999873
No 331
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.22 E-value=32 Score=40.21 Aligned_cols=65 Identities=20% Similarity=0.240 Sum_probs=54.8
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 038048 158 KSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISA 222 (575)
Q Consensus 158 ~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~ 222 (575)
+....-+|..+|+.+.+.+.|.++|++|=+.+|.++- ...+-.+....|.-++|+.++.+....-
T Consensus 393 FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 393 FAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence 3447778889999999999999999999999999998 7777778888899999999888776653
No 332
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=70.08 E-value=65 Score=38.20 Aligned_cols=58 Identities=12% Similarity=0.083 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH----------------------HhCCCCHH-HHHHHHHHHHcCCHHHHHHHHH
Q 038048 160 RILGNLAWAYMQQNNFEMAEQYYRKAL----------------------SLGVDMNK-QCNLAICLMHMNRVTEAKSLLQ 216 (575)
Q Consensus 160 ~a~~nLG~aY~~qGryeEAe~~yrkAL----------------------eidPdn~~-~~NLA~iy~~qGr~eEAi~lLe 216 (575)
.++.++|..+..+-.+++|.++|.+.- ..-|++.. +--+|..+..-|-.++|...|-
T Consensus 797 ~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 797 DAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHH
Confidence 499999999999999999999997532 12367666 6678888999999999888774
Q ss_pred H
Q 038048 217 A 217 (575)
Q Consensus 217 k 217 (575)
+
T Consensus 877 r 877 (1189)
T KOG2041|consen 877 R 877 (1189)
T ss_pred h
Confidence 3
No 333
>PF12854 PPR_1: PPR repeat
Probab=69.89 E-value=8.5 Score=27.20 Aligned_cols=22 Identities=27% Similarity=0.179 Sum_probs=11.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHH
Q 038048 195 QCNLAICLMHMNRVTEAKSLLQ 216 (575)
Q Consensus 195 ~~NLA~iy~~qGr~eEAi~lLe 216 (575)
+..|-..|.+.|+.++|.++|+
T Consensus 10 y~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 10 YNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHH
Confidence 4444455555555555555544
No 334
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=69.61 E-value=23 Score=40.19 Aligned_cols=73 Identities=7% Similarity=-0.014 Sum_probs=59.7
Q ss_pred hcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCC-HHHHHHHHHHHHHHcCCCC
Q 038048 154 VEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNR-VTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 154 L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr-~eEAi~lLekALel~P~n~ 226 (575)
.-+++...|.+...-..+.+.+.+--..|.++|..+|+++. |.--|.-..+-+. .+.|.++|.+.|..+|+.+
T Consensus 100 rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp 174 (568)
T KOG2396|consen 100 RFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSP 174 (568)
T ss_pred hcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCCh
Confidence 34567778877777677777799999999999999999999 8877777777666 8889999999999998865
No 335
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.55 E-value=19 Score=41.90 Aligned_cols=67 Identities=16% Similarity=0.283 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 160 RILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-------QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 160 ~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-------~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
.++.|-|.-.++..+|..|+++|...+...|.+.. ..+|+.||+.+.+.|.|.+++++|-+.+|.++
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~ 428 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSP 428 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccH
Confidence 35566677788999999999999999998775543 45999999999999999999999999988765
No 336
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=69.42 E-value=20 Score=32.81 Aligned_cols=45 Identities=16% Similarity=0.055 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038048 177 MAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKIS 221 (575)
Q Consensus 177 EAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel 221 (575)
-|+++|.++..+.|+.+. ++.||.=+....-|+++..-.+++|.+
T Consensus 62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 62 GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 477899999999999988 888888887777788888888877764
No 337
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=68.04 E-value=8.4 Score=29.42 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=23.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 038048 163 GNLAWAYMQQNNFEMAEQYYRKALS 187 (575)
Q Consensus 163 ~nLG~aY~~qGryeEAe~~yrkALe 187 (575)
++||.+|..+|+++.|...+++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 6899999999999999999999994
No 338
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=67.64 E-value=19 Score=43.81 Aligned_cols=129 Identities=12% Similarity=-0.004 Sum_probs=78.5
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHCCCHHHHHHHHh-cCHHHHHHHHHHHHHhhHHHHHHHhHH
Q 038048 64 QLIDKDPSRAVSLFWAAINAGDRV---DSALKDMAVVMKQLDRSDEAIEARS-GRIEEEIELLQNKLKNIEEGIAFAGVK 139 (575)
Q Consensus 64 ~l~~kd~eeAi~lf~kAL~l~p~~---~~Al~nLA~iy~qqGrydEAie~~~-gaLeeAi~lL~~~L~l~~~a~a~~~nl 139 (575)
.+..+.++.|+..|++.-..-|+- .+|++.+|..++.+ |.+..- ..+++|...+...+.
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~------------ 547 (932)
T PRK13184 485 FLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEK-----ASEQGDPRDFTQALSEFSYLHG------------ 547 (932)
T ss_pred HHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHH-----HHhcCChHHHHHHHHHHHHhcC------------
Confidence 456678999999999988777664 35788888888654 222100 112222222222221
Q ss_pred HHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HH------HHHHHHHHcCCHHHH
Q 038048 140 TKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK--QC------NLAICLMHMNRVTEA 211 (575)
Q Consensus 140 a~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~--~~------NLA~iy~~qGr~eEA 211 (575)
.|.-+--|..-|.+|..+|+|+|-+++|.-|++..|+.+. .. .|=.++.. +-..|
T Consensus 548 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 610 (932)
T PRK13184 548 ---------------GVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYK--HRREA 610 (932)
T ss_pred ---------------CCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHH--HHHHH
Confidence 1111223344458999999999999999999999999886 22 22222222 23455
Q ss_pred HHHHHHHHHHcCCCC
Q 038048 212 KSLLQAVKISAGNRQ 226 (575)
Q Consensus 212 i~lLekALel~P~n~ 226 (575)
....--++..-|...
T Consensus 611 ~~~~~~~~~~~~~~~ 625 (932)
T PRK13184 611 LVFMLLALWIAPEKI 625 (932)
T ss_pred HHHHHHHHHhCcccc
Confidence 556666677777654
No 339
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=66.91 E-value=19 Score=38.45 Aligned_cols=61 Identities=21% Similarity=0.210 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038048 161 ILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKIS 221 (575)
Q Consensus 161 a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel 221 (575)
.++-.+..|...|.+.+|+++-++++.++|=+.. +.-|-.+|...|+--+|++.|++.-+.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~v 342 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEV 342 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHH
Confidence 3344458899999999999999999999999998 888999999999999999999887654
No 340
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=66.26 E-value=11 Score=41.79 Aligned_cols=58 Identities=7% Similarity=0.037 Sum_probs=41.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH-------HHhCCCCH-H-HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038048 163 GNLAWAYMQQNNFEMAEQYYRKA-------LSLGVDMN-K-QCNLAICLMHMNRVTEAKSLLQAVKI 220 (575)
Q Consensus 163 ~nLG~aY~~qGryeEAe~~yrkA-------LeidPdn~-~-~~NLA~iy~~qGr~eEAi~lLekALe 220 (575)
..|..++.-+|+|..|++.++-. +..-|.-. . .+.+|.+|+.++||.+|+..|..+|-
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44457888889999998876642 11122222 2 67889999999999999999988776
No 341
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=65.79 E-value=11 Score=41.52 Aligned_cols=69 Identities=14% Similarity=0.114 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHH
Q 038048 90 ALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAY 169 (575)
Q Consensus 90 Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY 169 (575)
++.+|..++.-+|+|..|++..... +. ++. ...-.+-+-+..+++.+|.+|
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~i-dl-------------------~~~---------~l~~~V~~~~is~~YyvGFay 174 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENI-DL-------------------NKK---------GLYTKVPACHISTYYYVGFAY 174 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhcc-Cc-------------------ccc---------hhhccCcchheehHHHHHHHH
Confidence 4567888899999999999873220 00 000 001122344456899999999
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 038048 170 MQQNNFEMAEQYYRKALS 187 (575)
Q Consensus 170 ~~qGryeEAe~~yrkALe 187 (575)
+.+++|.+|+..|...|-
T Consensus 175 lMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 175 LMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999874
No 342
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=65.78 E-value=1.6e+02 Score=29.98 Aligned_cols=47 Identities=17% Similarity=0.111 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHh-----CCCCHH----HHHHHHHHH-HcCCHHHHHHHHHHHHHH
Q 038048 175 FEMAEQYYRKALSL-----GVDMNK----QCNLAICLM-HMNRVTEAKSLLQAVKIS 221 (575)
Q Consensus 175 yeEAe~~yrkALei-----dPdn~~----~~NLA~iy~-~qGr~eEAi~lLekALel 221 (575)
.++|...|++|+++ .|.++. ..|.+..|. -+|+.++|+.+.++++..
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 47888999998875 577775 567787765 499999999999998885
No 343
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.06 E-value=1.9e+02 Score=36.02 Aligned_cols=65 Identities=22% Similarity=0.056 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------CCH----------------H-HHHHHHHHHHcCCHHHHHHH
Q 038048 161 ILGNLAWAYMQQNNFEMAEQYYRKALSLGV---------DMN----------------K-QCNLAICLMHMNRVTEAKSL 214 (575)
Q Consensus 161 a~~nLG~aY~~qGryeEAe~~yrkALeidP---------dn~----------------~-~~NLA~iy~~qGr~eEAi~l 214 (575)
-|..|+.++..+|+|+.|+..-++|-.+.- +.. + .-.|-..|...|=++|-+.+
T Consensus 1222 N~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl 1301 (1666)
T KOG0985|consen 1222 NFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISL 1301 (1666)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHH
Confidence 345677888889999999998888765431 111 1 12567778899999999999
Q ss_pred HHHHHHHcCCC
Q 038048 215 LQAVKISAGNR 225 (575)
Q Consensus 215 LekALel~P~n 225 (575)
++.+|-+...+
T Consensus 1302 ~Ea~LGLERAH 1312 (1666)
T KOG0985|consen 1302 LEAGLGLERAH 1312 (1666)
T ss_pred HHhhhchhHHH
Confidence 99888775543
No 344
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=64.68 E-value=19 Score=34.94 Aligned_cols=50 Identities=18% Similarity=0.126 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 038048 175 FEMAEQYYRKALSLGVDMNKQCNLAICLMHMNRVTEAKSLLQAVKISAGN 224 (575)
Q Consensus 175 yeEAe~~yrkALeidPdn~~~~NLA~iy~~qGr~eEAi~lLekALel~P~ 224 (575)
.+..++..++.+...|+-..+.+++.++..+|+.++|....+++..+.|.
T Consensus 127 l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 45556667777788897777899999999999999999999999999993
No 345
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.44 E-value=1.3e+02 Score=37.46 Aligned_cols=114 Identities=19% Similarity=0.148 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHhcCHHH--HHHHHHHHHHh-hHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHH
Q 038048 88 DSALKDMAVVMKQLDRSDEAIEARSGRIEE--EIELLQNKLKN-IEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGN 164 (575)
Q Consensus 88 ~~Al~nLA~iy~qqGrydEAie~~~gaLee--Ai~lL~~~L~l-~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~n 164 (575)
+..|..||.+-++.|...+|++.|.++-+- ..++.+..-+. .+++ +-+...+++.. ..+|. +-..
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyikadDps~y~eVi~~a~~~~~~ed---Lv~yL~MaRkk------~~E~~---id~e 1171 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKADDPSNYLEVIDVASRTGKYED---LVKYLLMARKK------VREPY---IDSE 1171 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhcCCcHHHHHHHHHHHhcCcHHH---HHHHHHHHHHh------hcCcc---chHH
Confidence 567888999999999999999887665221 11111111100 0000 00111111111 01222 3344
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038048 165 LAWAYMQQNNFEMAEQYYRKALSLGVDMNKQCNLAICLMHMNRVTEAKSLLQAV 218 (575)
Q Consensus 165 LG~aY~~qGryeEAe~~yrkALeidPdn~~~~NLA~iy~~qGr~eEAi~lLekA 218 (575)
|-.+|.+.++..|-+... ..|+++..-..|.-+.+.|.|+.|.-+|..+
T Consensus 1172 Li~AyAkt~rl~elE~fi-----~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v 1220 (1666)
T KOG0985|consen 1172 LIFAYAKTNRLTELEEFI-----AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV 1220 (1666)
T ss_pred HHHHHHHhchHHHHHHHh-----cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh
Confidence 566777777777766543 4566666667788888888888888777654
No 346
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=64.14 E-value=41 Score=28.71 Aligned_cols=25 Identities=28% Similarity=0.108 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 038048 161 ILGNLAWAYMQQNNFEMAEQYYRKA 185 (575)
Q Consensus 161 a~~nLG~aY~~qGryeEAe~~yrkA 185 (575)
.+...|.-+-+.|++++|+.+|+++
T Consensus 8 ~~a~~AVe~D~~gr~~eAi~~Y~~a 32 (75)
T cd02682 8 KYAINAVKAEKEGNAEDAITNYKKA 32 (75)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4556677788888888888887765
No 347
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=63.03 E-value=40 Score=38.33 Aligned_cols=133 Identities=17% Similarity=0.163 Sum_probs=76.4
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHH
Q 038048 62 HIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTK 141 (575)
Q Consensus 62 ~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~ 141 (575)
..++.+||.-.|-.-...+|...|..+......+.+...+|.|+.|.....++ +.++..-...+...-....-+++.-.
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~-~~~~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDV-EKIIGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhch-hhhhcCCchHHHHHHHhhhchhhHHH
Confidence 34567889888888888999998988887777899999999999999885543 22221111111100000000001111
Q ss_pred HHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHH
Q 038048 142 MARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCN 197 (575)
Q Consensus 142 al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~N 197 (575)
++... ...+.-+-++++++.--+..-..+|-+++|..++++.+.++|.... +.|
T Consensus 376 a~s~a--~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~ 430 (831)
T PRK15180 376 ALSTA--EMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVN 430 (831)
T ss_pred HHHHH--HHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhccccee
Confidence 10000 0111122334444444445566677788888888888888776665 554
No 348
>PF12854 PPR_1: PPR repeat
Probab=63.02 E-value=14 Score=26.04 Aligned_cols=26 Identities=12% Similarity=0.152 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 038048 159 SRILGNLAWAYMQQNNFEMAEQYYRK 184 (575)
Q Consensus 159 ~~a~~nLG~aY~~qGryeEAe~~yrk 184 (575)
...|+.|-..|.+.|+.++|+.+|++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 34788999999999999999999986
No 349
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=62.94 E-value=54 Score=33.90 Aligned_cols=61 Identities=11% Similarity=-0.023 Sum_probs=56.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 166 AWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 166 G~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
..-+++.+..++|+...+.-++-+|.+.. ..-|-.+|.-.|+|++|...++-+-.+.|++.
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 34577889999999999999999999999 88899999999999999999999999999765
No 350
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.06 E-value=1.5e+02 Score=34.01 Aligned_cols=141 Identities=18% Similarity=0.062 Sum_probs=78.2
Q ss_pred ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCC-----CHHHHHHHHhcCHHH----HHHHHHHHHHhhHHHHHHHhHH
Q 038048 69 DPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLD-----RSDEAIEARSGRIEE----EIELLQNKLKNIEEGIAFAGVK 139 (575)
Q Consensus 69 d~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqG-----rydEAie~~~gaLee----Ai~lL~~~L~l~~~a~a~~~nl 139 (575)
-+..|..-|.++.... .+.+.+.||.+|.+.. +++.|+.++..+-+. +.-.++.....-. ...+.
T Consensus 271 ~l~~aa~~~~~~a~~~--~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~----~~~d~ 344 (552)
T KOG1550|consen 271 YLKLAAESFKKAATKG--LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGT----KERDY 344 (552)
T ss_pred HHHHHHHHHHHHHhhc--CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCC----ccccH
Confidence 3444544455554444 3457788888888854 566688775444321 1112222111000 00000
Q ss_pred HHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHc-CCHHHHHH
Q 038048 140 TKMARSQGKKIQITVEQEKSRILGNLAWAYMQQ----NNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHM-NRVTEAKS 213 (575)
Q Consensus 140 a~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~q----GryeEAe~~yrkALeidPdn~~-~~NLA~iy~~q-Gr~eEAi~ 213 (575)
..+.. -+.+...-.+..++++||.+|..= -+...|..+|.+|-+.. ++. ...++.++..- ++++.+..
T Consensus 345 ~~A~~----yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~ 418 (552)
T KOG1550|consen 345 RRAFE----YYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALA 418 (552)
T ss_pred HHHHH----HHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHH
Confidence 00000 122344556777889999887643 68999999999999998 333 44444443322 88888777
Q ss_pred HHHHHHHH
Q 038048 214 LLQAVKIS 221 (575)
Q Consensus 214 lLekALel 221 (575)
.+....+.
T Consensus 419 ~~~~~a~~ 426 (552)
T KOG1550|consen 419 LYLYLAEL 426 (552)
T ss_pred HHHHHHHh
Confidence 77666554
No 351
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=60.78 E-value=2e+02 Score=38.51 Aligned_cols=67 Identities=13% Similarity=-0.044 Sum_probs=58.9
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048 157 EKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNR 225 (575)
Q Consensus 157 d~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n 225 (575)
.-...|.++|.+-+..|+++-|-.+.-+|.+.. -+. ....|..++.+|+-..|+..+++.+..+-.+
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~ 1735 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPD 1735 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhccc
Confidence 345699999999999999999999999999988 344 7888999999999999999999999876544
No 352
>PF13041 PPR_2: PPR repeat family
Probab=60.65 E-value=26 Score=26.19 Aligned_cols=35 Identities=17% Similarity=0.202 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHH
Q 038048 160 RILGNLAWAYMQQNNFEMAEQYYRKALSL--GVDMNK 194 (575)
Q Consensus 160 ~a~~nLG~aY~~qGryeEAe~~yrkALei--dPdn~~ 194 (575)
..|+.|-..|.+.|++++|..+|++..+. .|+...
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~T 40 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYT 40 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHH
Confidence 35666777777777777777777777764 354443
No 353
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=60.13 E-value=47 Score=34.31 Aligned_cols=52 Identities=29% Similarity=0.332 Sum_probs=43.7
Q ss_pred HHcCCHHHHHHHHHHHHHhC----CCCHH-----HHHHHHHHHHcC-CHHHHHHHHHHHHHH
Q 038048 170 MQQNNFEMAEQYYRKALSLG----VDMNK-----QCNLAICLMHMN-RVTEAKSLLQAVKIS 221 (575)
Q Consensus 170 ~~qGryeEAe~~yrkALeid----Pdn~~-----~~NLA~iy~~qG-r~eEAi~lLekALel 221 (575)
..+|+++.|+.+|.|+-.+. |+... .+|.|.-+...+ ++++|...+++++++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~ 65 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDI 65 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 57899999999999987755 44442 568899999999 999999999999998
No 354
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.97 E-value=57 Score=38.03 Aligned_cols=108 Identities=19% Similarity=0.219 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHhc---CHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHH
Q 038048 89 SALKDMAVVMKQLDRSDEAIEARSG---RIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNL 165 (575)
Q Consensus 89 ~Al~nLA~iy~qqGrydEAie~~~g---aLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nL 165 (575)
+.+..++..+..+|-.++|+++... +++.++++- .+..+ ..+..+.+...-|-.|
T Consensus 615 ~~rt~va~Fle~~g~~e~AL~~s~D~d~rFelal~lg---------------rl~iA-------~~la~e~~s~~Kw~~L 672 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQALELSTDPDQRFELALKLG---------------RLDIA-------FDLAVEANSEVKWRQL 672 (794)
T ss_pred hhhhhHHhHhhhccchHhhhhcCCChhhhhhhhhhcC---------------cHHHH-------HHHHHhhcchHHHHHH
Confidence 4567889999999999999988211 122111110 11111 1234455667788999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--------CCCHH-------------HHHHHH-HHHHcCCHHHHHHHHHHH
Q 038048 166 AWAYMQQNNFEMAEQYYRKALSLG--------VDMNK-------------QCNLAI-CLMHMNRVTEAKSLLQAV 218 (575)
Q Consensus 166 G~aY~~qGryeEAe~~yrkALeid--------Pdn~~-------------~~NLA~-iy~~qGr~eEAi~lLekA 218 (575)
|.+.+..|++..|.++|.+|-.+. -.+.. .+|+|. +|+..|+++++..+|...
T Consensus 673 g~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 673 GDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHHHHhc
Confidence 999999999999999999986642 12222 236654 588999999998887654
No 355
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=59.03 E-value=24 Score=35.39 Aligned_cols=45 Identities=24% Similarity=0.166 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 038048 178 AEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISA 222 (575)
Q Consensus 178 Ae~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~ 222 (575)
|+.+|.+|+.+.|++.. ++.||.++...|+.=+|+-+|-+++-..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~ 46 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVR 46 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSS
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcC
Confidence 78999999999999999 9999999999999999999999998653
No 356
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=58.58 E-value=80 Score=32.11 Aligned_cols=59 Identities=14% Similarity=0.090 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HH--HHHHHHHHHHcCCHHHHHHHHHHHH
Q 038048 161 ILGNLAWAYMQQNNFEMAEQYYRKALSLGVDM-----NK--QCNLAICLMHMNRVTEAKSLLQAVK 219 (575)
Q Consensus 161 a~~nLG~aY~~qGryeEAe~~yrkALeidPdn-----~~--~~NLA~iy~~qGr~eEAi~lLekAL 219 (575)
+...||..|+..|+|++|+.+|+.++...-.. .. ...|..|+...|+.++.+.+.-+++
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 66788999999999999999999997654311 11 4577888899999888887765554
No 357
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=57.25 E-value=1.5e+02 Score=34.12 Aligned_cols=65 Identities=20% Similarity=0.070 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH--------HHHHhCCCCHH----HHHHHHHHHHcCCHHHHHHHHHHHHH-HcC
Q 038048 159 SRILGNLAWAYMQQNNFEMAEQYYR--------KALSLGVDMNK----QCNLAICLMHMNRVTEAKSLLQAVKI-SAG 223 (575)
Q Consensus 159 ~~a~~nLG~aY~~qGryeEAe~~yr--------kALeidPdn~~----~~NLA~iy~~qGr~eEAi~lLekALe-l~P 223 (575)
+.+++..|..+...|+.+.|+.+|. .+....+.+.- ..|+..++...+.-.+...-+.++++ ++|
T Consensus 404 ~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p 481 (608)
T PF10345_consen 404 PLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEP 481 (608)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCc
Confidence 5588899999999999999999998 44455555543 45899999888876664433444444 344
No 358
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=56.72 E-value=22 Score=40.71 Aligned_cols=74 Identities=26% Similarity=0.192 Sum_probs=60.9
Q ss_pred hhcCCcHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 153 TVEQEKSRILGNLAWAYMQQ---NNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 153 ~L~Pd~~~a~~nLG~aY~~q---GryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
.--|+....|.|.+.+|++. |+.-.|+.--..|++++|.... ++.|+.++..++++.||+.+...+....|.+.
T Consensus 402 q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 402 QYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDV 479 (758)
T ss_pred hhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhh
Confidence 33566666777888777775 5666777778889999999999 99999999999999999999998888888543
No 359
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=56.22 E-value=46 Score=31.37 Aligned_cols=84 Identities=18% Similarity=0.064 Sum_probs=60.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--------H--------HHHHHHHHHHcCCHHHHHHHHH----HHHHH
Q 038048 162 LGNLAWAYMQQNNFEMAEQYYRKALSLGVDMN--------K--------QCNLAICLMHMNRVTEAKSLLQ----AVKIS 221 (575)
Q Consensus 162 ~~nLG~aY~~qGryeEAe~~yrkALeidPdn~--------~--------~~NLA~iy~~qGr~eEAi~lLe----kALel 221 (575)
+.++|+..++.+++-.|+-+|++||.+..+-. + ..|||..+..+|+.+=.++|++ +++.+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 46788999999999999999999998742221 1 2499999999999999999996 45566
Q ss_pred cCCCCC--ChhHHHHHHHHHHHHHHh
Q 038048 222 AGNRQM--DTSYSRSFERAIQMLTEL 245 (575)
Q Consensus 222 ~P~n~~--~~~~l~slerA~elL~el 245 (575)
-|.=+. -+.+..+++-...+|-.+
T Consensus 84 iPQCp~~~C~afi~sLGCCk~ALl~F 109 (140)
T PF10952_consen 84 IPQCPNTECEAFIDSLGCCKKALLDF 109 (140)
T ss_pred ccCCCCcchHHHHHhhhccHHHHHHH
Confidence 665432 234455555555554443
No 360
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=54.92 E-value=1.7e+02 Score=34.03 Aligned_cols=113 Identities=14% Similarity=-0.055 Sum_probs=81.6
Q ss_pred HHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHH
Q 038048 65 LIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMAR 144 (575)
Q Consensus 65 l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~ 144 (575)
+-.|+++...-+|++.+-.--.....|...+.-+...|+.+-|-.....+.
T Consensus 308 i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~----------------------------- 358 (577)
T KOG1258|consen 308 ITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARAC----------------------------- 358 (577)
T ss_pred hhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhh-----------------------------
Confidence 456777777777777765544555667777777777766666654422210
Q ss_pred HhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHH
Q 038048 145 SQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKS 213 (575)
Q Consensus 145 sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~ 213 (575)
.-..+.-+.+...-+.+-..+|++..|..+|++...-.|+... ..--+.....+|+.+.+..
T Consensus 359 -------~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 359 -------KIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred -------hhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence 1113444556666778888999999999999999988899888 7777888899999999995
No 361
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=54.87 E-value=18 Score=23.65 Aligned_cols=26 Identities=19% Similarity=0.287 Sum_probs=16.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038048 162 LGNLAWAYMQQNNFEMAEQYYRKALS 187 (575)
Q Consensus 162 ~~nLG~aY~~qGryeEAe~~yrkALe 187 (575)
|+.|-..|.+.|++++|+..|++..+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 45555666666666666666666543
No 362
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=54.83 E-value=23 Score=26.26 Aligned_cols=30 Identities=7% Similarity=-0.155 Sum_probs=26.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 038048 195 QCNLAICLMHMNRVTEAKSLLQAVKISAGN 224 (575)
Q Consensus 195 ~~NLA~iy~~qGr~eEAi~lLekALel~P~ 224 (575)
+..||.+-+..++|++|+.-|+++|++...
T Consensus 4 ~~~Lgeisle~e~f~qA~~D~~~aL~i~~~ 33 (38)
T PF10516_consen 4 YDLLGEISLENENFEQAIEDYEKALEIQEE 33 (38)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 567999999999999999999999998643
No 363
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=53.97 E-value=33 Score=22.33 Aligned_cols=28 Identities=21% Similarity=0.144 Sum_probs=20.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHH-HHHHHH
Q 038048 173 NNFEMAEQYYRKALSLGVDMNK-QCNLAI 200 (575)
Q Consensus 173 GryeEAe~~yrkALeidPdn~~-~~NLA~ 200 (575)
|+++.|...|++++...|.... +..++.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 4667788888888888887776 655544
No 364
>PF13041 PPR_2: PPR repeat family
Probab=52.83 E-value=30 Score=25.91 Aligned_cols=31 Identities=19% Similarity=0.181 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038048 191 DMNKQCNLAICLMHMNRVTEAKSLLQAVKIS 221 (575)
Q Consensus 191 dn~~~~NLA~iy~~qGr~eEAi~lLekALel 221 (575)
+-..+..|-..|.+.|++++|.++|++..+.
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 3333677888999999999999999999874
No 365
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=50.89 E-value=30 Score=22.78 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=14.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038048 162 LGNLAWAYMQQNNFEMAEQYYRKALS 187 (575)
Q Consensus 162 ~~nLG~aY~~qGryeEAe~~yrkALe 187 (575)
|+.+-..|.+.|++++|+.+|.+..+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44455556666666666666655543
No 366
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=50.73 E-value=57 Score=34.46 Aligned_cols=38 Identities=18% Similarity=0.143 Sum_probs=34.0
Q ss_pred HHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 038048 151 QITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSL 188 (575)
Q Consensus 151 aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALei 188 (575)
.+.++|-+..+|..|-.+|+..|+...|+..|++.-..
T Consensus 179 Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 179 LIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 46779999999999999999999999999999987653
No 367
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=50.55 E-value=42 Score=36.58 Aligned_cols=71 Identities=21% Similarity=0.286 Sum_probs=50.1
Q ss_pred HHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----------------------C-CHH---HHHHHHHHHH
Q 038048 151 QITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGV----------------------D-MNK---QCNLAICLMH 204 (575)
Q Consensus 151 aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidP----------------------d-n~~---~~NLA~iy~~ 204 (575)
+++++|+-+.+|..|+.- ..--..+|+.+|++||+.-. | |.. .-.||.|-.+
T Consensus 210 ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARk 287 (556)
T KOG3807|consen 210 ALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARK 287 (556)
T ss_pred HHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHH
Confidence 467788888887777632 22335677777777776421 1 111 1278999999
Q ss_pred cCCHHHHHHHHHHHHHHcC
Q 038048 205 MNRVTEAKSLLQAVKISAG 223 (575)
Q Consensus 205 qGr~eEAi~lLekALel~P 223 (575)
+|+..||+++++.+.+..|
T Consensus 288 lGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 288 LGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred hhhHHHHHHHHHHHhhhcc
Confidence 9999999999999888666
No 368
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=50.19 E-value=59 Score=36.48 Aligned_cols=61 Identities=15% Similarity=0.172 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038048 161 ILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKIS 221 (575)
Q Consensus 161 a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel 221 (575)
+-..|..+|+.+++.+-|+..-.+.+.++|.+.. ++.-|.|+..+.||.||-.-+--+.-+
T Consensus 230 Ietklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ym 291 (569)
T PF15015_consen 230 IETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADYM 291 (569)
T ss_pred HHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466889999999999999999999999999998 999999999999999998776554443
No 369
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=50.02 E-value=1.7e+02 Score=26.80 Aligned_cols=101 Identities=10% Similarity=0.061 Sum_probs=61.3
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCcHH---HHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHH
Q 038048 63 IQLIDKDPSRAVSLFWAAINAGDRVDS---ALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVK 139 (575)
Q Consensus 63 l~l~~kd~eeAi~lf~kAL~l~p~~~~---Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nl 139 (575)
..+..||.-+|+++.+..+....+... .+..-|.++.++. ... ...+.-. .++...
T Consensus 5 ~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA-----~~t--en~d~k~--------------~yLl~s 63 (111)
T PF04781_consen 5 DYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLA-----KKT--ENPDVKF--------------RYLLGS 63 (111)
T ss_pred HHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHH-----Hhc--cCchHHH--------------HHHHHh
Confidence 346788899999999998887666542 3333355544332 111 1100000 111111
Q ss_pred HHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 038048 140 TKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLG 189 (575)
Q Consensus 140 a~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeid 189 (575)
..++ .+.+.+.|..+..++.||.-+..---|++++.--+++|.+.
T Consensus 64 ve~~-----s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 64 VECF-----SRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HHHH-----HHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 1121 13467788888899999988887888899998888888763
No 370
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=49.64 E-value=83 Score=26.86 Aligned_cols=24 Identities=17% Similarity=0.091 Sum_probs=16.8
Q ss_pred HHHHHHHHHHCCCHHHHHHHHhcC
Q 038048 91 LKDMAVVMKQLDRSDEAIEARSGR 114 (575)
Q Consensus 91 l~nLA~iy~qqGrydEAie~~~ga 114 (575)
+...|.-+-+.|++++|+.+|..+
T Consensus 9 ~a~~AVe~D~~gr~~eAi~~Y~~a 32 (75)
T cd02682 9 YAINAVKAEKEGNAEDAITNYKKA 32 (75)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 345567777888888888875443
No 371
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=49.24 E-value=1.2e+02 Score=32.98 Aligned_cols=103 Identities=17% Similarity=0.092 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHH
Q 038048 89 SALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWA 168 (575)
Q Consensus 89 ~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~a 168 (575)
.....||.+|.+-++|..|-....+.-- +. +... .+.. -....+..+|.+
T Consensus 104 ~irl~LAsiYE~Eq~~~~aaq~L~~I~~----------~t---g~~~-~d~~----------------~kl~l~iriarl 153 (399)
T KOG1497|consen 104 SIRLHLASIYEKEQNWRDAAQVLVGIPL----------DT---GQKA-YDVE----------------QKLLLCIRIARL 153 (399)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhccCc----------cc---chhh-hhhH----------------HHHHHHHHHHHH
Confidence 4567889999999999988877443200 00 0000 0000 001266789999
Q ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCHH-H----HHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038048 169 YMQQNNFEMAEQYYRKALSL--GVDMNK-Q----CNLAICLMHMNRVTEAKSLLQAVKIS 221 (575)
Q Consensus 169 Y~~qGryeEAe~~yrkALei--dPdn~~-~----~NLA~iy~~qGr~eEAi~lLekALel 221 (575)
|++.++..+|+.+..++--+ +-.|.. . .-.|.++-..++|=||-..|.++...
T Consensus 154 yLe~~d~veae~~inRaSil~a~~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels~~ 213 (399)
T KOG1497|consen 154 YLEDDDKVEAEAYINRASILQAESSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQR 213 (399)
T ss_pred HHhcCcHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987533 334444 2 24577788889999998888877664
No 372
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=49.14 E-value=3.9e+02 Score=29.19 Aligned_cols=55 Identities=15% Similarity=0.053 Sum_probs=38.4
Q ss_pred HHHHHcCChHHHHHHHHHHHHc-CCCcH-HHHHHH--HHHHHHCCCHHHHHHHHhcCHH
Q 038048 62 HIQLIDKDPSRAVSLFWAAINA-GDRVD-SALKDM--AVVMKQLDRSDEAIEARSGRIE 116 (575)
Q Consensus 62 ~l~l~~kd~eeAi~lf~kAL~l-~p~~~-~Al~nL--A~iy~qqGrydEAie~~~gaLe 116 (575)
...+...++..|..+|...+.. .+... ..+..| |.-++..-++++|.+.+...+.
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3456778999999999998874 43332 344444 6677888899999988555443
No 373
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=48.00 E-value=1.9e+02 Score=33.15 Aligned_cols=44 Identities=16% Similarity=0.111 Sum_probs=37.8
Q ss_pred HHhhcCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHH
Q 038048 151 QITVEQEKSRILGNLAWAYMQQNN-FEMAEQYYRKALSLGVDMNK 194 (575)
Q Consensus 151 aL~L~Pd~~~a~~nLG~aY~~qGr-yeEAe~~yrkALeidPdn~~ 194 (575)
++..+|+++++|..-|.-.+..+. .+.|.++|.++|..+|+.+.
T Consensus 131 ~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~ 175 (568)
T KOG2396|consen 131 MLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPK 175 (568)
T ss_pred HHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChH
Confidence 467799999999998855555555 99999999999999999997
No 374
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=47.20 E-value=32 Score=37.17 Aligned_cols=73 Identities=7% Similarity=0.028 Sum_probs=62.4
Q ss_pred cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHH-HHHHHHHcCCHHHHHHHHHHHHHHcCCCCC
Q 038048 155 EQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCN-LAICLMHMNRVTEAKSLLQAVKISAGNRQM 227 (575)
Q Consensus 155 ~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~N-LA~iy~~qGr~eEAi~lLekALel~P~n~~ 227 (575)
-+.++..|...+.-..+.|-|.+--..|.+++..+|.|.+ |.- -+.=|...++++.+..++.+.|..+|+++.
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~ 177 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPR 177 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCch
Confidence 4667778877777777788999999999999999999999 654 566788999999999999999999998864
No 375
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=46.65 E-value=4.7e+02 Score=29.47 Aligned_cols=124 Identities=15% Similarity=0.090 Sum_probs=69.3
Q ss_pred HHcCChHHHHHHHHHHHHc----CCC-----cHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHH
Q 038048 65 LIDKDPSRAVSLFWAAINA----GDR-----VDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAF 135 (575)
Q Consensus 65 l~~kd~eeAi~lf~kAL~l----~p~-----~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~ 135 (575)
+.++++++|..+-...+.. +-. .+..|+.+..+|...|+..+-...+...+..+. |++. ..+.+.
T Consensus 137 ~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAt--Lrhd----~e~qav 210 (493)
T KOG2581|consen 137 IDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTAT--LRHD----EEGQAV 210 (493)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhh--hcCc----chhHHH
Confidence 3457888887777665432 111 134678888899998886665554322222110 0000 000000
Q ss_pred -HhHHHHHHHHhch----hhHHhh--------cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048 136 -AGVKTKMARSQGK----KIQITV--------EQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK 194 (575)
Q Consensus 136 -~~nla~al~sqg~----k~aL~L--------~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~ 194 (575)
.+.+...+...+. ...+.. +.+.+..++.+|.+-.-+++|..|..+|..|+...|+...
T Consensus 211 LiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~a 282 (493)
T KOG2581|consen 211 LINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAA 282 (493)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhh
Confidence 0111111111110 011111 2245668999999999999999999999999999997553
No 376
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=46.64 E-value=2.7e+02 Score=30.52 Aligned_cols=30 Identities=23% Similarity=0.205 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHhcCHHH
Q 038048 88 DSALKDMAVVMKQLDRSDEAIEARSGRIEE 117 (575)
Q Consensus 88 ~~Al~nLA~iy~qqGrydEAie~~~gaLee 117 (575)
.+++.+.|.-|.+.|+-+.|++.+..-++.
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~k 133 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEK 133 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 568889999999999999999986665444
No 377
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=44.94 E-value=2.7e+02 Score=31.21 Aligned_cols=27 Identities=11% Similarity=-0.033 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHhcC
Q 038048 88 DSALKDMAVVMKQLDRSDEAIEARSGR 114 (575)
Q Consensus 88 ~~Al~nLA~iy~qqGrydEAie~~~ga 114 (575)
...|..||.+.+.+|+++-|++++++.
T Consensus 347 ~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 347 PEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 456666777777777777777765443
No 378
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=44.43 E-value=39 Score=27.38 Aligned_cols=26 Identities=27% Similarity=0.267 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038048 161 ILGNLAWAYMQQNNFEMAEQYYRKAL 186 (575)
Q Consensus 161 a~~nLG~aY~~qGryeEAe~~yrkAL 186 (575)
.+...|.-+-..|+|++|+.+|.+|+
T Consensus 7 ~~~~~Av~~D~~g~~~~A~~~Y~~ai 32 (69)
T PF04212_consen 7 ELIKKAVEADEAGNYEEALELYKEAI 32 (69)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34566777778888888888887765
No 379
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=44.11 E-value=35 Score=22.17 Aligned_cols=26 Identities=15% Similarity=0.170 Sum_probs=22.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038048 195 QCNLAICLMHMNRVTEAKSLLQAVKI 220 (575)
Q Consensus 195 ~~NLA~iy~~qGr~eEAi~lLekALe 220 (575)
+..|-.+|.+.|++++|..+|++..+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 45678899999999999999998765
No 380
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=41.89 E-value=6e+02 Score=29.33 Aligned_cols=121 Identities=13% Similarity=0.059 Sum_probs=73.9
Q ss_pred HcCChHHHHHHHHHHHHcCC--CcHH----HHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHH
Q 038048 66 IDKDPSRAVSLFWAAINAGD--RVDS----ALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVK 139 (575)
Q Consensus 66 ~~kd~eeAi~lf~kAL~l~p--~~~~----Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nl 139 (575)
...+++.|+.++.+++.+.. +..+ +.+-|+.+|.+.+... |+....+.++. ++.
T Consensus 72 eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~----~~~--------------- 131 (608)
T PF10345_consen 72 ETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIED----SET--------------- 131 (608)
T ss_pred HcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHH----Hhc---------------
Confidence 45689999999999987653 3322 3455677777777666 66663332221 111
Q ss_pred HHHHHHhchhhHHhhcCCc--HHHHHHH-HHHHHHcCCHHHHHHHHHHHHHhC--CCCHH---H--HHHHHHHHHcCCHH
Q 038048 140 TKMARSQGKKIQITVEQEK--SRILGNL-AWAYMQQNNFEMAEQYYRKALSLG--VDMNK---Q--CNLAICLMHMNRVT 209 (575)
Q Consensus 140 a~al~sqg~k~aL~L~Pd~--~~a~~nL-G~aY~~qGryeEAe~~yrkALeid--Pdn~~---~--~NLA~iy~~qGr~e 209 (575)
.++. ..++-.+ ...+...+++..|+..++....+. ..+.. . +-.|.++...+..+
T Consensus 132 ---------------~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 132 ---------------YGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred ---------------cCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 0000 0011112 222323389999999999998876 34443 2 23467778888899
Q ss_pred HHHHHHHHHHHH
Q 038048 210 EAKSLLQAVKIS 221 (575)
Q Consensus 210 EAi~lLekALel 221 (575)
+++..++++...
T Consensus 197 d~~~~l~~~~~~ 208 (608)
T PF10345_consen 197 DVLELLQRAIAQ 208 (608)
T ss_pred hHHHHHHHHHHH
Confidence 999999888553
No 381
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=41.61 E-value=1.8e+02 Score=34.50 Aligned_cols=17 Identities=24% Similarity=0.182 Sum_probs=10.7
Q ss_pred HHHHHHHCCCHHHHHHH
Q 038048 94 MAVVMKQLDRSDEAIEA 110 (575)
Q Consensus 94 LA~iy~qqGrydEAie~ 110 (575)
+|.++.-+|+|.||..+
T Consensus 638 lA~~~Ay~gKF~EAAkl 654 (1081)
T KOG1538|consen 638 LADVFAYQGKFHEAAKL 654 (1081)
T ss_pred HHHHHHhhhhHHHHHHH
Confidence 45666666666666665
No 382
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=40.57 E-value=90 Score=39.14 Aligned_cols=133 Identities=13% Similarity=-0.011 Sum_probs=86.7
Q ss_pred HHcCChHHHHHHHHHHHHcC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHH
Q 038048 65 LIDKDPSRAVSLFWAAINAG--------DRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFA 136 (575)
Q Consensus 65 l~~kd~eeAi~lf~kAL~l~--------p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~ 136 (575)
-..+|.++|+.+-.+|.-+. |+....+.+|+......++.-.|+..+..+..
T Consensus 984 ~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~-------------------- 1043 (1236)
T KOG1839|consen 984 NRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALK-------------------- 1043 (1236)
T ss_pred hhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHH--------------------
Confidence 44678888888887775432 22334677888777777766666554222110
Q ss_pred hHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHH----HHHHHHHHHHcCC
Q 038048 137 GVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLG-----VDMNK----QCNLAICLMHMNR 207 (575)
Q Consensus 137 ~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeid-----Pdn~~----~~NLA~iy~~qGr 207 (575)
...... ....|.-..+..|++.++...++++.|+.+.+.|+++. |.... +..+|.++..+|.
T Consensus 1044 ----l~~Ls~-----ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~d 1114 (1236)
T KOG1839|consen 1044 ----LKLLSS-----GEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKD 1114 (1236)
T ss_pred ----hhcccc-----CCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHH
Confidence 000000 11345555577899999999999999999999999965 32222 4567777778888
Q ss_pred HHHHHHHHHHHHHHcCCCC
Q 038048 208 VTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 208 ~eEAi~lLekALel~P~n~ 226 (575)
+..|....+....+.+.-+
T Consensus 1115 fr~al~~ek~t~~iy~~ql 1133 (1236)
T KOG1839|consen 1115 FRNALEHEKVTYGIYKEQL 1133 (1236)
T ss_pred HHHHHHHHhhHHHHHHHhh
Confidence 8887777777777665443
No 383
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=40.44 E-value=51 Score=28.04 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=14.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 038048 162 LGNLAWAYMQQNNFEMAEQYYRKAL 186 (575)
Q Consensus 162 ~~nLG~aY~~qGryeEAe~~yrkAL 186 (575)
+...|.-+-..|+|++|+.+|..|+
T Consensus 9 ~a~~Ave~D~~g~y~eA~~~Y~~ai 33 (76)
T cd02681 9 FARLAVQRDQEGRYSEAVFYYKEAA 33 (76)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3444555556666666666666654
No 384
>PRK11619 lytic murein transglycosylase; Provisional
Probab=40.34 E-value=3.2e+02 Score=32.19 Aligned_cols=140 Identities=13% Similarity=-0.007 Sum_probs=87.6
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHH
Q 038048 62 HIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTK 141 (575)
Q Consensus 62 ~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~ 141 (575)
++.+..+|++.+..++...-.........+|-+|.++..+|+.++|..++...... . .|++-++.
T Consensus 320 r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~-~--------------~fYG~LAa 384 (644)
T PRK11619 320 RMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ-R--------------GFYPMVAA 384 (644)
T ss_pred HHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC-C--------------CcHHHHHH
Confidence 34567778887777776532222234567888999988999999999886553111 1 12222221
Q ss_pred HHHHhchhhHHhh--cCCcH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHH
Q 038048 142 MARSQGKKIQITV--EQEKS-----RILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQCNLAICLMHMNRVTEAKSL 214 (575)
Q Consensus 142 al~sqg~k~aL~L--~Pd~~-----~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~~~NLA~iy~~qGr~eEAi~l 214 (575)
. ..|....+.. .|... ......+..+..+|+..+|...+..++.. .+......++.+....|.++-|+..
T Consensus 385 ~--~Lg~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~-~~~~~~~~la~~A~~~g~~~~ai~~ 461 (644)
T PRK11619 385 Q--RLGEEYPLKIDKAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVAS-RSKTEQAQLARYAFNQQWWDLSVQA 461 (644)
T ss_pred H--HcCCCCCCCCCCCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 1 1122111100 11110 12345568889999999999999998875 3333388889999999999999988
Q ss_pred HHHHH
Q 038048 215 LQAVK 219 (575)
Q Consensus 215 LekAL 219 (575)
..++.
T Consensus 462 ~~~~~ 466 (644)
T PRK11619 462 TIAGK 466 (644)
T ss_pred Hhhch
Confidence 76543
No 385
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=40.16 E-value=60 Score=21.25 Aligned_cols=27 Identities=26% Similarity=0.175 Sum_probs=22.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038048 195 QCNLAICLMHMNRVTEAKSLLQAVKIS 221 (575)
Q Consensus 195 ~~NLA~iy~~qGr~eEAi~lLekALel 221 (575)
+..+-..|.+.|++++|..+|.+....
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 345677899999999999999998763
No 386
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=39.35 E-value=73 Score=20.57 Aligned_cols=29 Identities=17% Similarity=0.060 Sum_probs=23.2
Q ss_pred CChHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 038048 68 KDPSRAVSLFWAAINAGDRVDSALKDMAV 96 (575)
Q Consensus 68 kd~eeAi~lf~kAL~l~p~~~~Al~nLA~ 96 (575)
++++.|...|++++...|.....+...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 46788999999999999988777765543
No 387
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=38.62 E-value=4.4e+02 Score=29.56 Aligned_cols=76 Identities=11% Similarity=0.029 Sum_probs=58.3
Q ss_pred HHhhcCCcHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHH-HHHHHHHH----HHcCCHHHHHHHHHHHHHHcC
Q 038048 151 QITVEQEKSRILGNLAWAYMQQNN--FEMAEQYYRKALSLGVDMNK-QCNLAICL----MHMNRVTEAKSLLQAVKISAG 223 (575)
Q Consensus 151 aL~L~Pd~~~a~~nLG~aY~~qGr--yeEAe~~yrkALeidPdn~~-~~NLA~iy----~~qGr~eEAi~lLekALel~P 223 (575)
++.++|+...+|+.+.+++.+.+. +..=+++..++|+++|.|.. +...=.++ .......+=+.+..+++..++
T Consensus 101 ~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nf 180 (421)
T KOG0529|consen 101 ALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNF 180 (421)
T ss_pred HHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccc
Confidence 467899999999999999998876 48889999999999999987 44322222 222235677888889888887
Q ss_pred CCC
Q 038048 224 NRQ 226 (575)
Q Consensus 224 ~n~ 226 (575)
.|.
T Consensus 181 SNY 183 (421)
T KOG0529|consen 181 SNY 183 (421)
T ss_pred hhh
Confidence 765
No 388
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=38.54 E-value=4.6e+02 Score=27.06 Aligned_cols=82 Identities=11% Similarity=-0.087 Sum_probs=48.9
Q ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHH
Q 038048 86 RVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNL 165 (575)
Q Consensus 86 ~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nL 165 (575)
.++..+..+|..|++-|++.+|+.++.-.-+.........+ ... .....|.....+...
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll--------------~~~-------~~~~~~~e~dlfi~R 146 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLL--------------EEW-------STKGYPSEADLFIAR 146 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHH--------------HHH-------HHHTSS--HHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHH--------------HHH-------HHhcCCcchhHHHHH
Confidence 45778999999999999999999985443221110000000 000 112345555666666
Q ss_pred H-HHHHHcCCHHHHHHHHHHHHHh
Q 038048 166 A-WAYMQQNNFEMAEQYYRKALSL 188 (575)
Q Consensus 166 G-~aY~~qGryeEAe~~yrkALei 188 (575)
| .-|+.+++...|...+..-++.
T Consensus 147 aVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 147 AVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 5 7788999999999877766655
No 389
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=38.41 E-value=3.8e+02 Score=28.65 Aligned_cols=109 Identities=7% Similarity=0.025 Sum_probs=81.8
Q ss_pred HHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHH
Q 038048 65 LIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMAR 144 (575)
Q Consensus 65 l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~ 144 (575)
.+..++.++-.+|+..+..+..++.|+...+
T Consensus 37 ~Yte~fr~~m~YfRAI~~~~E~S~RAl~LT~------------------------------------------------- 67 (318)
T KOG0530|consen 37 AYTEDFRDVMDYFRAIIAKNEKSPRALQLTE------------------------------------------------- 67 (318)
T ss_pred eechhHHHHHHHHHHHHhccccCHHHHHHHH-------------------------------------------------
Confidence 3456788888899888887777665443221
Q ss_pred HhchhhHHhhcCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHH-HHHHHHHHHHHH
Q 038048 145 SQGKKIQITVEQEKSRILGNLAWAYMQQN-NFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVT-EAKSLLQAVKIS 221 (575)
Q Consensus 145 sqg~k~aL~L~Pd~~~a~~nLG~aY~~qG-ryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~e-EAi~lLekALel 221 (575)
.+|.++|.+.++|...=.++..++ +..+-+.++.+.++-+|.|.. +...-.+.-..|++. .-+.+...++..
T Consensus 68 -----d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~ 142 (318)
T KOG0530|consen 68 -----DAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDD 142 (318)
T ss_pred -----HHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhc
Confidence 124567888888877766665554 567777889999999999999 888888888888888 788899999998
Q ss_pred cCCCCC
Q 038048 222 AGNRQM 227 (575)
Q Consensus 222 ~P~n~~ 227 (575)
+..+..
T Consensus 143 DaKNYH 148 (318)
T KOG0530|consen 143 DAKNYH 148 (318)
T ss_pred cccchh
Confidence 777653
No 390
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=38.02 E-value=59 Score=27.70 Aligned_cols=18 Identities=17% Similarity=0.028 Sum_probs=11.5
Q ss_pred HcCCHHHHHHHHHHHHHH
Q 038048 204 HMNRVTEAKSLLQAVKIS 221 (575)
Q Consensus 204 ~qGr~eEAi~lLekALel 221 (575)
..|++++|+.+|..+++.
T Consensus 18 ~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 18 EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HhhhHHHHHHHHHHHHHH
Confidence 556666666666666664
No 391
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=37.98 E-value=90 Score=29.58 Aligned_cols=48 Identities=13% Similarity=0.036 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCH
Q 038048 161 ILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRV 208 (575)
Q Consensus 161 a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~ 208 (575)
.....+...+..|+|.-|..+...++..+|+|.. ..-++.+|..+|.-
T Consensus 72 ~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 72 KVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 4556677788888899999999998888998888 66677776655543
No 392
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=37.20 E-value=53 Score=27.95 Aligned_cols=31 Identities=23% Similarity=0.091 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038048 177 MAEQYYRKALSLGVDMNKQCNLAICLMHMNRVTEAKSLLQAVKIS 221 (575)
Q Consensus 177 EAe~~yrkALeidPdn~~~~NLA~iy~~qGr~eEAi~lLekALel 221 (575)
.|+.+.++|++. -..|+|++|+.+|..+++.
T Consensus 5 ~Ai~~a~~Ave~--------------D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 5 DAVQFARLAVQR--------------DQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHH--------------HHccCHHHHHHHHHHHHHH
Confidence 566666666544 4788999999988888775
No 393
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.48 E-value=2.3e+02 Score=33.30 Aligned_cols=79 Identities=18% Similarity=0.110 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHH-
Q 038048 88 DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLA- 166 (575)
Q Consensus 88 ~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG- 166 (575)
..-|..||.+.++.|++.-|.+++..+-+-.-=+|- .+.......+..++.....+| .+|+|
T Consensus 666 ~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl---~t~~g~~~~l~~la~~~~~~g--------------~~N~AF 728 (794)
T KOG0276|consen 666 EVKWRQLGDAALSAGELPLASECFLRARDLGSLLLL---YTSSGNAEGLAVLASLAKKQG--------------KNNLAF 728 (794)
T ss_pred hHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhh---hhhcCChhHHHHHHHHHHhhc--------------ccchHH
Confidence 445677888888888888888885554221000000 000000011223333333333 36677
Q ss_pred HHHHHcCCHHHHHHHHH
Q 038048 167 WAYMQQNNFEMAEQYYR 183 (575)
Q Consensus 167 ~aY~~qGryeEAe~~yr 183 (575)
.+|...|+++++++++.
T Consensus 729 ~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 729 LAYFLSGDYEECLELLI 745 (794)
T ss_pred HHHHHcCCHHHHHHHHH
Confidence 77888999998866544
No 394
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=36.37 E-value=86 Score=20.78 Aligned_cols=27 Identities=15% Similarity=0.122 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038048 161 ILGNLAWAYMQQNNFEMAEQYYRKALS 187 (575)
Q Consensus 161 a~~nLG~aY~~qGryeEAe~~yrkALe 187 (575)
.|+.+-.++.+.|+++.|..+|....+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345555666666666666666665443
No 395
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=35.89 E-value=54 Score=27.80 Aligned_cols=26 Identities=19% Similarity=0.173 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038048 161 ILGNLAWAYMQQNNFEMAEQYYRKAL 186 (575)
Q Consensus 161 a~~nLG~aY~~qGryeEAe~~yrkAL 186 (575)
.+...|.-+-..|+|++|+.+|.++|
T Consensus 8 ~l~~~Ave~D~~g~y~eAl~~Y~~ai 33 (77)
T cd02683 8 EVLKRAVELDQEGRFQEALVCYQEGI 33 (77)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34455677777888888888877764
No 396
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=35.22 E-value=4.1e+02 Score=35.93 Aligned_cols=54 Identities=13% Similarity=0.084 Sum_probs=33.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcC
Q 038048 59 RAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGR 114 (575)
Q Consensus 59 rA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~ga 114 (575)
..+++.+..|.++.|-.+.-+|.+.. .+.++...|..++++|+-..|+...++.
T Consensus 1675 qsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~ 1728 (2382)
T KOG0890|consen 1675 QSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEI 1728 (2382)
T ss_pred HHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 34445556666776666666665554 3456666777777777777777664443
No 397
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=34.35 E-value=1.6e+02 Score=34.12 Aligned_cols=68 Identities=7% Similarity=-0.002 Sum_probs=51.0
Q ss_pred HhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038048 152 ITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKI 220 (575)
Q Consensus 152 L~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALe 220 (575)
++.+|.+..+|+.|-.-+..+ -++++...|++.+...|..+. |.......+...+|+..+.+|.+.|.
T Consensus 13 ie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLv 81 (656)
T KOG1914|consen 13 IEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLV 81 (656)
T ss_pred HhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 566888888888877766666 888888888888888888887 76666666777777777777666554
No 398
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=34.11 E-value=6.4e+02 Score=27.37 Aligned_cols=153 Identities=9% Similarity=0.110 Sum_probs=84.1
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCc--------HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHH--------HHHHHHHH
Q 038048 63 IQLIDKDPSRAVSLFWAAINAGDRV--------DSALKDMAVVMKQLDRSDEAIEARSGRIEEE--------IELLQNKL 126 (575)
Q Consensus 63 l~l~~kd~eeAi~lf~kAL~l~p~~--------~~Al~nLA~iy~qqGrydEAie~~~gaLeeA--------i~lL~~~L 126 (575)
-....+++++|+..|...+..+-.. ..+..+|+.+|...|++..--+.....-+.. ..++...+
T Consensus 12 ~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLi 91 (421)
T COG5159 12 NAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLI 91 (421)
T ss_pred HhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHH
Confidence 3456789999999999988763221 2467899999999999876655521111100 11222221
Q ss_pred H-------hhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----C--CCCH
Q 038048 127 K-------NIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSL----G--VDMN 193 (575)
Q Consensus 127 ~-------l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALei----d--Pdn~ 193 (575)
. .++..+.....+.+-+....+ ..+. ...-..+..+|++.|+|.+|++.....+.- + |...
T Consensus 92 ekf~~~~dsl~dqi~v~~~~iewA~rEkr-~fLr-----~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li 165 (421)
T COG5159 92 EKFPYSSDSLEDQIKVLTALIEWADREKR-KFLR-----LELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLI 165 (421)
T ss_pred HhcCCCCccHHHHHHHHHHHHHHHHHHHH-HHHH-----HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCcccee
Confidence 1 111111111111111111111 1111 013355678888999999998877766532 1 2222
Q ss_pred H-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038048 194 K-QCNLAICLMHMNRVTEAKSLLQAVKIS 221 (575)
Q Consensus 194 ~-~~NLA~iy~~qGr~eEAi~lLekALel 221 (575)
. +.-=..+|.+..+..++..-+..|-..
T Consensus 166 ~vhllESKvyh~irnv~KskaSLTaArt~ 194 (421)
T COG5159 166 TVHLLESKVYHEIRNVSKSKASLTAARTL 194 (421)
T ss_pred ehhhhhHHHHHHHHhhhhhhhHHHHHHHH
Confidence 3 444466788888888887777666554
No 399
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=32.14 E-value=96 Score=21.40 Aligned_cols=29 Identities=28% Similarity=0.445 Sum_probs=16.8
Q ss_pred HHHHHHH--HHHHHcC-----CHHHHHHHHHHHHHh
Q 038048 160 RILGNLA--WAYMQQN-----NFEMAEQYYRKALSL 188 (575)
Q Consensus 160 ~a~~nLG--~aY~~qG-----ryeEAe~~yrkALei 188 (575)
.++++|| .+|..-. ++++|+.+|++|-+.
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHHc
Confidence 3566666 4333332 367777777777553
No 400
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=31.48 E-value=1.1e+02 Score=32.21 Aligned_cols=44 Identities=11% Similarity=0.058 Sum_probs=40.5
Q ss_pred HHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048 151 QITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK 194 (575)
Q Consensus 151 aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~ 194 (575)
.+.++|+++.-+--.|.+|.++|.+.-|+..+...++.-|+.+.
T Consensus 207 ~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~ 250 (269)
T COG2912 207 LLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPI 250 (269)
T ss_pred HHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchH
Confidence 36778999988889999999999999999999999999999986
No 401
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=31.20 E-value=2.5e+02 Score=28.56 Aligned_cols=53 Identities=13% Similarity=0.076 Sum_probs=39.9
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH-----H--HHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 038048 172 QNNFEMAEQYYRKALSLGVDMN-----K--QCNLAICLMHMNRVTEAKSLLQAVKISAGN 224 (575)
Q Consensus 172 qGryeEAe~~yrkALeidPdn~-----~--~~NLA~iy~~qGr~eEAi~lLekALel~P~ 224 (575)
.......+.++.+|++...... . ...+|..|...|++++|..+|+.+......
T Consensus 151 ~~hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~ 210 (247)
T PF11817_consen 151 VDHSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRR 210 (247)
T ss_pred cchHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 3455566788888887653222 2 458999999999999999999999877553
No 402
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=30.94 E-value=2.1e+02 Score=32.92 Aligned_cols=105 Identities=10% Similarity=-0.049 Sum_probs=52.9
Q ss_pred cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCC----Ch
Q 038048 155 EQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQM----DT 229 (575)
Q Consensus 155 ~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~----~~ 229 (575)
.|.++......+.+...+|.|+.|.+.+..+-.+--.... ..-+-.-+..+|++++|....+-.|...=++++ +.
T Consensus 319 ~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa 398 (831)
T PRK15180 319 QQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAA 398 (831)
T ss_pred CCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeec
Confidence 4444545555566666777777766666555443322222 222223345666677766666655543222221 00
Q ss_pred hHHHHHHHHHHHHHHhccccccCccccccc
Q 038048 230 SYSRSFERAIQMLTELESPSVLKLTELEVG 259 (575)
Q Consensus 230 ~~l~slerA~elL~ele~al~~~p~~~e~~ 259 (575)
.....++-..+.+-.....+.++|.++.++
T Consensus 399 ~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~ 428 (831)
T PRK15180 399 GSADALQLFDKSYHYWKRVLLLNPETQSGW 428 (831)
T ss_pred ccHHHHhHHHHHHHHHHHHhccCChhcccc
Confidence 112333444455555666666666666554
No 403
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=30.75 E-value=5.5e+02 Score=32.51 Aligned_cols=58 Identities=22% Similarity=0.229 Sum_probs=40.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH------HHh----CCCCHH-H---HHHHHHHHHcCCHHHHHHHHHHHHH
Q 038048 163 GNLAWAYMQQNNFEMAEQYYRKA------LSL----GVDMNK-Q---CNLAICLMHMNRVTEAKSLLQAVKI 220 (575)
Q Consensus 163 ~nLG~aY~~qGryeEAe~~yrkA------Lei----dPdn~~-~---~NLA~iy~~qGr~eEAi~lLekALe 220 (575)
..-|.+|..-|+.++|+..|+.+ +.+ .++-.. . ..|+.-+..++++-||-+++...+.
T Consensus 956 ~~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 956 DEAALMYERCGKLEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred cHHHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence 44567888889999999888754 333 222222 2 5677778888888888888776665
No 404
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.43 E-value=3.5e+02 Score=32.90 Aligned_cols=29 Identities=14% Similarity=0.031 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHhcCHH
Q 038048 88 DSALKDMAVVMKQLDRSDEAIEARSGRIE 116 (575)
Q Consensus 88 ~~Al~nLA~iy~qqGrydEAie~~~gaLe 116 (575)
...+...|.-+.++|++++|...|...+.
T Consensus 368 ~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~ 396 (933)
T KOG2114|consen 368 AEIHRKYGDYLYGKGDFDEATDQYIETIG 396 (933)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHcc
Confidence 45677889999999999999999765543
No 405
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=30.34 E-value=2.6e+02 Score=31.37 Aligned_cols=61 Identities=15% Similarity=0.190 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHH--HHHHHHHHHHcCCHHHHHHHHHHHH
Q 038048 159 SRILGNLAWAYMQQNNFEMAEQYYRKALSLG-------VDMNK--QCNLAICLMHMNRVTEAKSLLQAVK 219 (575)
Q Consensus 159 ~~a~~nLG~aY~~qGryeEAe~~yrkALeid-------Pdn~~--~~NLA~iy~~qGr~eEAi~lLekAL 219 (575)
.+.+.|+-.+-..+|+|..-..+-.+|...- +..+. .+.-|.+.+.+++|+.|.++|-.+-
T Consensus 187 Inm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 187 INMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred HHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3466666666677777776666666665441 11111 4556777777789999998886543
No 406
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=29.70 E-value=1.4e+02 Score=36.80 Aligned_cols=68 Identities=12% Similarity=0.047 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHc----C---CHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCC
Q 038048 159 SRILGNLAWAYMQQ----N---NFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQM 227 (575)
Q Consensus 159 ~~a~~nLG~aY~~q----G---ryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~ 227 (575)
.++++.+|.+++.+ | .+++|+.-|++.-. .|.-+- +..-|.+|..+|+++|-+++|.-+++..|..+.
T Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (932)
T PRK13184 512 YEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPE 587 (932)
T ss_pred hHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCc
Confidence 45889999877765 2 45666666655432 344444 888899999999999999999999999998875
No 407
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=29.49 E-value=3.1e+02 Score=23.18 Aligned_cols=23 Identities=30% Similarity=0.277 Sum_probs=15.4
Q ss_pred HHHHHHHCCCHHHHHHHHhcCHH
Q 038048 94 MAVVMKQLDRSDEAIEARSGRIE 116 (575)
Q Consensus 94 LA~iy~qqGrydEAie~~~gaLe 116 (575)
.|.-+-+.|+|++|+.+|..+++
T Consensus 12 ~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 12 RAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 34556678888888887655433
No 408
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=28.92 E-value=94 Score=20.94 Aligned_cols=28 Identities=36% Similarity=0.441 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHc----CCHHHHHHHHHHHHHh
Q 038048 161 ILGNLAWAYMQQ----NNFEMAEQYYRKALSL 188 (575)
Q Consensus 161 a~~nLG~aY~~q----GryeEAe~~yrkALei 188 (575)
++++||..|..- .++.+|..+|++|-+.
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~ 34 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAEL 34 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHc
Confidence 556666666532 3677777777776543
No 409
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=28.87 E-value=8e+02 Score=27.17 Aligned_cols=70 Identities=17% Similarity=0.030 Sum_probs=47.4
Q ss_pred cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048 155 EQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSL--GVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNR 225 (575)
Q Consensus 155 ~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALei--dPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n 225 (575)
.|++. +-.|.+.+..+..=.+.++...+..++- -.++.. +---|.++.++|+.+||...|++++.+-++.
T Consensus 326 apSPv-V~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ 398 (415)
T COG4941 326 APSPV-VTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNA 398 (415)
T ss_pred CCCCe-EeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCCh
Confidence 44433 3356666666666677777776655543 112222 5567889999999999999999999987653
No 410
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=27.60 E-value=1.2e+02 Score=25.24 Aligned_cols=20 Identities=30% Similarity=0.330 Sum_probs=9.6
Q ss_pred HHHHHHcCCHHHHHHHHHHH
Q 038048 166 AWAYMQQNNFEMAEQYYRKA 185 (575)
Q Consensus 166 G~aY~~qGryeEAe~~yrkA 185 (575)
|.-.-..|+|++|+.+|.+|
T Consensus 13 Av~~D~~g~y~eA~~~Y~~a 32 (75)
T cd02678 13 AIEEDNAGNYEEALRLYQHA 32 (75)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 34444445555555544444
No 411
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=27.53 E-value=1.2e+02 Score=24.43 Aligned_cols=26 Identities=15% Similarity=0.321 Sum_probs=16.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038048 195 QCNLAICLMHMNRVTEAKSLLQAVKI 220 (575)
Q Consensus 195 ~~NLA~iy~~qGr~eEAi~lLekALe 220 (575)
+...-.-|...|++++|.+++.++..
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44555566777777777777776655
No 412
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=27.38 E-value=1.7e+02 Score=30.05 Aligned_cols=22 Identities=18% Similarity=0.034 Sum_probs=17.5
Q ss_pred HcCCHHHHHHHHHHHHHHcCCC
Q 038048 204 HMNRVTEAKSLLQAVKISAGNR 225 (575)
Q Consensus 204 ~qGr~eEAi~lLekALel~P~n 225 (575)
..+++..|+.+|++|+.++|.-
T Consensus 190 d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 190 DAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred CcccHHHHHHHHHHHHHhCCCC
Confidence 4567888999999999988753
No 413
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=27.31 E-value=99 Score=25.41 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=14.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 038048 164 NLAWAYMQQNNFEMAEQYYRKAL 186 (575)
Q Consensus 164 nLG~aY~~qGryeEAe~~yrkAL 186 (575)
..|.-+-..|++++|+.+|.+|+
T Consensus 13 ~~Av~~d~~g~~~eAl~~Y~~a~ 35 (77)
T smart00745 13 SKALKADEAGDYEEALELYKKAI 35 (77)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555566677777776666654
No 414
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=27.03 E-value=1.1e+02 Score=29.67 Aligned_cols=39 Identities=18% Similarity=0.078 Sum_probs=33.4
Q ss_pred hhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 038048 153 TVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDM 192 (575)
Q Consensus 153 ~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn 192 (575)
...| ++.++.+++.++..+|+.++|....+++..+.|.+
T Consensus 139 ~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 139 RRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 3345 45688999999999999999999999999999943
No 415
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=27.03 E-value=1.1e+03 Score=27.75 Aligned_cols=55 Identities=22% Similarity=0.178 Sum_probs=50.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038048 167 WAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKIS 221 (575)
Q Consensus 167 ~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel 221 (575)
.=|..+++..-|...|+-.|...+|.+. .+.....+...++-..|..+|++++..
T Consensus 409 mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 409 MEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 4467789999999999999999999999 778888999999999999999999986
No 416
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=26.93 E-value=4e+02 Score=25.29 Aligned_cols=34 Identities=21% Similarity=0.146 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH----HHHhCCCCHH
Q 038048 161 ILGNLAWAYMQQNNFEMAEQYYRK----ALSLGVDMNK 194 (575)
Q Consensus 161 a~~nLG~aY~~qGryeEAe~~yrk----ALeidPdn~~ 194 (575)
...|||..+..+|+.+=.+.|++- ++.+-|+-+.
T Consensus 52 sCHNLA~FWR~~gd~~yELkYLqlASE~VltLiPQCp~ 89 (140)
T PF10952_consen 52 SCHNLADFWRSQGDSDYELKYLQLASEKVLTLIPQCPN 89 (140)
T ss_pred HHhhHHHHHHHcCChHHHHHHHHHHHHHHHHhccCCCC
Confidence 679999999999999999999974 5566777664
No 417
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=26.79 E-value=3.2e+02 Score=26.39 Aligned_cols=61 Identities=20% Similarity=0.127 Sum_probs=38.6
Q ss_pred CcHHHH-HHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcC
Q 038048 54 DSPYVR-AKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGR 114 (575)
Q Consensus 54 d~~yar-A~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~ga 114 (575)
.+.|+. |......++.-+.-..++...+..+...++.+..+|.+|.+.|...+|-++...+
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~A 146 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEA 146 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 456666 4444455666777777777776656667889999999999999999999885443
No 418
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=26.45 E-value=4.2e+02 Score=24.42 Aligned_cols=64 Identities=11% Similarity=0.154 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------------H--H-HHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 038048 160 RILGNLAWAYMQQNNFEMAEQYYRKALSLGVDM--------------N--K-QCNLAICLMHMNRVTEAKSLLQAVKISA 222 (575)
Q Consensus 160 ~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn--------------~--~-~~NLA~iy~~qGr~eEAi~lLekALel~ 222 (575)
..+.++-.++...|+.+.-..+.++...++.+. + . +..++.+|...|++..|.++++......
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 356667778888899999999998887776322 2 1 5678889999999999999999999998
Q ss_pred C
Q 038048 223 G 223 (575)
Q Consensus 223 P 223 (575)
+
T Consensus 83 ~ 83 (126)
T PF12921_consen 83 P 83 (126)
T ss_pred C
Confidence 8
No 419
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=26.37 E-value=1.1e+02 Score=26.37 Aligned_cols=17 Identities=6% Similarity=-0.150 Sum_probs=7.8
Q ss_pred HcCCHHHHHHHHHHHHH
Q 038048 204 HMNRVTEAKSLLQAVKI 220 (575)
Q Consensus 204 ~qGr~eEAi~lLekALe 220 (575)
+.|..++|+.+|++++.
T Consensus 20 E~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 20 EWGDKEQALAHYRKGLR 36 (79)
T ss_pred hcCCHHHHHHHHHHHHH
Confidence 33444444444444444
No 420
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=26.14 E-value=1.2e+02 Score=25.47 Aligned_cols=33 Identities=18% Similarity=0.044 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038048 175 FEMAEQYYRKALSLGVDMNKQCNLAICLMHMNRVTEAKSLLQAVKIS 221 (575)
Q Consensus 175 yeEAe~~yrkALeidPdn~~~~NLA~iy~~qGr~eEAi~lLekALel 221 (575)
+++|+.+..+|++.+ ..|++++|+.+|..+++.
T Consensus 3 l~~Ai~lv~~Av~~D--------------~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 3 LEKAIALVVQAVKKD--------------QRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHHHHHHHHHHHHHH--------------HhccHHHHHHHHHHHHHH
No 421
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=25.86 E-value=3.8e+02 Score=28.71 Aligned_cols=44 Identities=14% Similarity=0.021 Sum_probs=39.1
Q ss_pred ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHh
Q 038048 69 DPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARS 112 (575)
Q Consensus 69 d~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~ 112 (575)
..-+|+.+++.++...|.+......|..+|..+|-...|...+.
T Consensus 198 ~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~ 241 (365)
T PF09797_consen 198 YLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYE 241 (365)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35678889999999999999999999999999999999999853
No 422
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=25.50 E-value=5.6e+02 Score=25.91 Aligned_cols=49 Identities=14% Similarity=0.204 Sum_probs=36.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHH
Q 038048 165 LAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSL 214 (575)
Q Consensus 165 LG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~l 214 (575)
...++.+.|.+++|++.+++... +|++.. ...|+.+-.....+..-++.
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~~lqn 166 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHPVLQN 166 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccHHHHh
Confidence 34789999999999999999998 888887 66676665555555444433
No 423
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=25.49 E-value=1.4e+02 Score=28.38 Aligned_cols=54 Identities=19% Similarity=0.089 Sum_probs=39.1
Q ss_pred cHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHH
Q 038048 55 SPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAI 108 (575)
Q Consensus 55 ~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAi 108 (575)
..........+..+|+.-|..+...++..+|++..+..-++.+|.++|.-.+.-
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~~~ 124 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSENA 124 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-SSH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhccCH
Confidence 344445555678899999999999999999999999998999888876555443
No 424
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=25.14 E-value=5.1e+02 Score=28.31 Aligned_cols=60 Identities=10% Similarity=-0.062 Sum_probs=47.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCH-H-HHH--HHHHHHHcCCHHHHHHHHHHHHHH
Q 038048 162 LGNLAWAYMQQNNFEMAEQYYRKALSL-GVDMN-K-QCN--LAICLMHMNRVTEAKSLLQAVKIS 221 (575)
Q Consensus 162 ~~nLG~aY~~qGryeEAe~~yrkALei-dPdn~-~-~~N--LA~iy~~qGr~eEAi~lLekALel 221 (575)
....+..++..++|..|...|...+.. .++.. . +.. .|.-++..-++++|..+|++++..
T Consensus 134 ~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 134 EWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 345567888999999999999999985 33332 2 444 466678999999999999998875
No 425
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=24.74 E-value=2.4e+02 Score=30.25 Aligned_cols=46 Identities=11% Similarity=-0.048 Sum_probs=41.7
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHH
Q 038048 172 QNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQA 217 (575)
Q Consensus 172 qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLek 217 (575)
....-+|+.+++.++...|.|.. ..-|..+|..+|-...|...|..
T Consensus 196 ~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 196 SEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 45567899999999999999999 99999999999999999999965
No 426
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=24.34 E-value=1.2e+02 Score=24.87 Aligned_cols=24 Identities=29% Similarity=0.297 Sum_probs=15.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 038048 163 GNLAWAYMQQNNFEMAEQYYRKAL 186 (575)
Q Consensus 163 ~nLG~aY~~qGryeEAe~~yrkAL 186 (575)
...|.-.-..|+|++|+.+|..|+
T Consensus 10 ~~~Av~~D~~g~~~~Al~~Y~~a~ 33 (75)
T cd02656 10 IKQAVKEDEDGNYEEALELYKEAL 33 (75)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334555566677777777776664
No 427
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=23.63 E-value=4.9e+02 Score=28.19 Aligned_cols=26 Identities=19% Similarity=0.388 Sum_probs=22.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038048 196 CNLAICLMHMNRVTEAKSLLQAVKIS 221 (575)
Q Consensus 196 ~NLA~iy~~qGr~eEAi~lLekALel 221 (575)
+.|+.+|.+.|+|.+|+.+..-++.-
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~E 154 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHE 154 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 47889999999999999999887763
No 428
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=23.56 E-value=39 Score=36.86 Aligned_cols=66 Identities=21% Similarity=0.053 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 161 ILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 161 a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
.+.|++.+-+..+.+..|+..-..+++.+++... ++..+..++...++++|++.++.+....|++.
T Consensus 277 ~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~ 343 (372)
T KOG0546|consen 277 IRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDK 343 (372)
T ss_pred cccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchH
Confidence 6677888899999999999888888888888777 89999999999999999999999999888764
No 429
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=23.47 E-value=3.3e+02 Score=30.84 Aligned_cols=85 Identities=13% Similarity=0.063 Sum_probs=58.8
Q ss_pred HHcCChHHHHHHHHHHHHcCCC--------c----------HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHH
Q 038048 65 LIDKDPSRAVSLFWAAINAGDR--------V----------DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKL 126 (575)
Q Consensus 65 l~~kd~eeAi~lf~kAL~l~p~--------~----------~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L 126 (575)
..+++|..|+.-|..||++-.+ . ...-..|..+|+..++.+-|+....+
T Consensus 187 yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hr------------- 253 (569)
T PF15015_consen 187 YRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHR------------- 253 (569)
T ss_pred HhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhh-------------
Confidence 3456677777777777654211 1 12345788889999999888876222
Q ss_pred HhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038048 127 KNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKAL 186 (575)
Q Consensus 127 ~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkAL 186 (575)
.|.++|....-+..-|.++..+.+|.+|...+--|.
T Consensus 254 ------------------------sI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 254 ------------------------SINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred ------------------------hhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 245677777777778899999999999988766554
No 430
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=23.42 E-value=4.9e+02 Score=26.50 Aligned_cols=62 Identities=11% Similarity=0.191 Sum_probs=46.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHH-HcCCHHHHHHHHHHHHHHcC
Q 038048 162 LGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK--QCNLAICLM-HMNRVTEAKSLLQAVKISAG 223 (575)
Q Consensus 162 ~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~--~~NLA~iy~-~qGr~eEAi~lLekALel~P 223 (575)
+..++.++.+.|+|++++.+.++++..+++... ..-|..+|. ..|..-.+...+........
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~ 68 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEE 68 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhc
Confidence 467899999999999999999999999988776 666788874 56666777777766555443
No 431
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=22.85 E-value=1.3e+02 Score=24.92 Aligned_cols=33 Identities=21% Similarity=0.114 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038048 175 FEMAEQYYRKALSLGVDMNKQCNLAICLMHMNRVTEAKSLLQAVKIS 221 (575)
Q Consensus 175 yeEAe~~yrkALeidPdn~~~~NLA~iy~~qGr~eEAi~lLekALel 221 (575)
+++|+.++.+|++ .-..|++++|+.+|.++++.
T Consensus 3 ~~~A~~l~~~Av~--------------~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 3 LQKAIELVKKAIE--------------EDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHHHHHHHHHHH--------------HHHcCCHHHHHHHHHHHHHH
Confidence 4567777777644 44677788777777777664
No 432
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=22.58 E-value=4.7e+02 Score=26.93 Aligned_cols=34 Identities=9% Similarity=0.227 Sum_probs=27.7
Q ss_pred HHHHHHHHHH---------HcCCHHHHHHHHHHHHHhCCCCHH
Q 038048 161 ILGNLAWAYM---------QQNNFEMAEQYYRKALSLGVDMNK 194 (575)
Q Consensus 161 a~~nLG~aY~---------~qGryeEAe~~yrkALeidPdn~~ 194 (575)
.|-.+|.+++ ..++...|+.++++|++++|.--.
T Consensus 171 l~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GV 213 (230)
T PHA02537 171 LYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGV 213 (230)
T ss_pred HHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCCh
Confidence 5566677773 567899999999999999998765
No 433
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=21.68 E-value=2.9e+02 Score=29.85 Aligned_cols=50 Identities=18% Similarity=0.177 Sum_probs=36.6
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Q 038048 62 HIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEAR 111 (575)
Q Consensus 62 ~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~ 111 (575)
..++..+.+.+|+.+.++++.++|-+...+..|-.+|...|+--.|+..|
T Consensus 287 ~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khy 336 (361)
T COG3947 287 RAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHY 336 (361)
T ss_pred HHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHH
Confidence 34455677788888888888888777777777777777777777777663
No 434
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=20.52 E-value=1.4e+02 Score=27.64 Aligned_cols=32 Identities=19% Similarity=0.230 Sum_probs=26.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048 163 GNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK 194 (575)
Q Consensus 163 ~nLG~aY~~qGryeEAe~~yrkALeidPdn~~ 194 (575)
..+|..+...|++++|..+|-+||.+.|+-..
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~ 98 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQPAE 98 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHH
Confidence 56888889999999999999999988887654
No 435
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=20.39 E-value=3.4e+02 Score=32.37 Aligned_cols=48 Identities=15% Similarity=0.129 Sum_probs=29.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHcCCHHHHHHHHHHH
Q 038048 167 WAYMQQNNFEMAEQYYRKALSLGVDMNK--QCNLAICLMHMNRVTEAKSLLQAV 218 (575)
Q Consensus 167 ~aY~~qGryeEAe~~yrkALeidPdn~~--~~NLA~iy~~qGr~eEAi~lLekA 218 (575)
.+....+++.+|-.+-++ .|.... ++-.|..+.+..+++||.+.|-+|
T Consensus 781 qlHve~~~W~eAFalAe~----hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 781 QLHVETQRWDEAFALAEK----HPEFKDDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred hheeecccchHhHhhhhh----CccccccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 445566777777665444 455554 566677777777777776666554
No 436
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=20.02 E-value=1.7e+02 Score=35.25 Aligned_cols=54 Identities=19% Similarity=0.155 Sum_probs=39.7
Q ss_pred cCCcHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCH
Q 038048 155 EQEKSRILGNLAWAYMQ---------QNNFEMAEQYYRKALSLGVDMNKQCNLAICLMHMNRV 208 (575)
Q Consensus 155 ~Pd~~~a~~nLG~aY~~---------qGryeEAe~~yrkALeidPdn~~~~NLA~iy~~qGr~ 208 (575)
.|..++.|..-|.+|.. .+..+.|+.+|++|.+..|.-..-.|+|.++...|+-
T Consensus 274 g~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~aaG~~ 336 (1226)
T KOG4279|consen 274 GPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLRAAGEH 336 (1226)
T ss_pred CCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHHHhhhh
Confidence 34455566666766654 4778899999999999999877777777777666643
Done!