Query 038048
Match_columns 575
No_of_seqs 309 out of 1837
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 11:43:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038048.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038048hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vtx_A MAMA; tetratricopeptide 99.8 1E-18 3.6E-23 159.4 19.5 159 56-225 7-174 (184)
2 2pl2_A Hypothetical conserved 99.8 1.7E-17 5.7E-22 158.5 22.3 163 52-226 3-185 (217)
3 4gyw_A UDP-N-acetylglucosamine 99.7 6.8E-17 2.3E-21 183.8 17.7 159 55-224 10-177 (723)
4 4i17_A Hypothetical protein; T 99.7 6.7E-16 2.3E-20 145.8 19.7 143 55-208 8-169 (228)
5 4eqf_A PEX5-related protein; a 99.7 1.4E-15 4.6E-20 152.8 22.4 75 151-225 203-280 (365)
6 4eqf_A PEX5-related protein; a 99.7 5.2E-16 1.8E-20 155.8 18.4 174 53-226 98-315 (365)
7 1w3b_A UDP-N-acetylglucosamine 99.7 5.2E-16 1.8E-20 157.4 18.3 177 50-226 63-271 (388)
8 4ga2_A E3 SUMO-protein ligase 99.7 2.8E-17 9.7E-22 148.9 7.2 127 63-226 6-134 (150)
9 3gyz_A Chaperone protein IPGC; 99.7 1.2E-16 4.1E-21 147.4 11.5 127 75-245 23-150 (151)
10 3uq3_A Heat shock protein STI1 99.7 4.4E-15 1.5E-19 139.4 21.8 143 57-225 41-206 (258)
11 1w3b_A UDP-N-acetylglucosamine 99.7 1.2E-15 4.1E-20 154.7 19.1 177 50-226 97-305 (388)
12 1fch_A Peroxisomal targeting s 99.7 7.2E-15 2.5E-19 146.2 24.3 75 151-225 207-284 (368)
13 2vgx_A Chaperone SYCD; alterna 99.7 3.3E-16 1.1E-20 142.0 13.0 136 73-248 6-142 (148)
14 3urz_A Uncharacterized protein 99.7 1.4E-15 4.8E-20 144.2 17.6 112 58-206 8-136 (208)
15 2pl2_A Hypothetical conserved 99.7 1.1E-15 3.6E-20 146.0 16.1 166 43-220 27-213 (217)
16 4gco_A Protein STI-1; structur 99.7 8.2E-16 2.8E-20 136.0 14.2 109 81-226 6-115 (126)
17 3hym_B Cell division cycle pro 99.7 1.1E-14 3.6E-19 141.8 22.4 202 60-261 62-309 (330)
18 2h6f_A Protein farnesyltransfe 99.6 2.9E-15 9.9E-20 157.9 18.9 160 56-226 99-274 (382)
19 3hym_B Cell division cycle pro 99.6 6.4E-15 2.2E-19 143.3 19.4 178 49-226 85-304 (330)
20 2q7f_A YRRB protein; TPR, prot 99.6 3.3E-15 1.1E-19 139.7 16.7 156 59-225 62-226 (243)
21 3qky_A Outer membrane assembly 99.6 1.3E-14 4.3E-19 140.4 21.1 186 55-248 16-251 (261)
22 4abn_A Tetratricopeptide repea 99.6 3.7E-15 1.3E-19 159.7 18.7 160 55-226 103-292 (474)
23 2xcb_A PCRH, regulatory protei 99.6 1.6E-15 5.5E-20 134.8 12.8 132 75-246 5-137 (142)
24 3uq3_A Heat shock protein STI1 99.6 1.2E-14 3.9E-19 136.5 19.3 136 57-226 8-173 (258)
25 3ieg_A DNAJ homolog subfamily 99.6 4.7E-14 1.6E-18 138.1 24.1 175 51-226 34-222 (359)
26 1fch_A Peroxisomal targeting s 99.6 1E-14 3.4E-19 145.2 19.6 170 57-226 101-319 (368)
27 3as5_A MAMA; tetratricopeptide 99.6 1.9E-14 6.6E-19 127.5 19.0 158 58-226 12-178 (186)
28 2ho1_A Type 4 fimbrial biogene 99.6 4.2E-14 1.4E-18 133.9 21.9 159 57-226 40-209 (252)
29 3ieg_A DNAJ homolog subfamily 99.6 1.1E-13 3.6E-18 135.6 25.4 180 62-244 128-355 (359)
30 3cv0_A Peroxisome targeting si 99.6 5.8E-14 2E-18 136.4 23.2 174 51-224 52-272 (327)
31 3mkr_A Coatomer subunit epsilo 99.6 1E-13 3.5E-18 139.3 24.1 162 65-226 76-269 (291)
32 2e2e_A Formate-dependent nitri 99.6 9.7E-15 3.3E-19 132.8 14.7 141 66-243 22-166 (177)
33 2vq2_A PILW, putative fimbrial 99.6 2E-13 6.8E-18 125.4 22.5 159 57-226 11-182 (225)
34 3u4t_A TPR repeat-containing p 99.6 2.4E-14 8.2E-19 136.8 15.8 161 62-222 11-209 (272)
35 2y4t_A DNAJ homolog subfamily 99.6 4.5E-14 1.5E-18 144.8 18.7 170 57-226 29-245 (450)
36 2fo7_A Synthetic consensus TPR 99.6 1E-13 3.5E-18 115.9 17.5 131 57-224 4-135 (136)
37 2r5s_A Uncharacterized protein 99.6 2.6E-14 8.7E-19 131.3 15.0 162 56-221 8-173 (176)
38 4gco_A Protein STI-1; structur 99.6 3.1E-14 1.1E-18 125.8 14.9 110 56-202 15-125 (126)
39 4gyw_A UDP-N-acetylglucosamine 99.6 1.7E-14 5.9E-19 164.1 16.8 133 83-226 4-145 (723)
40 2xpi_A Anaphase-promoting comp 99.6 1.7E-13 5.7E-18 146.0 23.3 186 62-258 381-586 (597)
41 2y4t_A DNAJ homolog subfamily 99.6 2.8E-13 9.6E-18 138.8 23.4 166 61-226 150-363 (450)
42 3cv0_A Peroxisome targeting si 99.6 1.2E-13 4E-18 134.2 19.2 170 57-226 24-240 (327)
43 3qou_A Protein YBBN; thioredox 99.6 8E-14 2.7E-18 139.2 18.5 161 50-221 113-284 (287)
44 2h6f_A Protein farnesyltransfe 99.6 5.5E-14 1.9E-18 148.2 16.9 202 48-261 125-358 (382)
45 2xpi_A Anaphase-promoting comp 99.5 2.9E-13 9.9E-18 144.2 21.6 170 54-223 305-506 (597)
46 1hh8_A P67PHOX, NCF-2, neutrop 99.5 1.2E-13 4.1E-18 128.0 15.5 130 57-226 9-155 (213)
47 3sz7_A HSC70 cochaperone (SGT) 99.5 2.5E-13 8.6E-18 122.7 17.1 124 85-246 8-132 (164)
48 3fp2_A TPR repeat-containing p 99.5 3.2E-13 1.1E-17 141.3 19.5 63 49-111 54-116 (537)
49 1xnf_A Lipoprotein NLPI; TPR, 99.5 6.7E-13 2.3E-17 126.2 20.0 159 56-226 45-249 (275)
50 3vtx_A MAMA; tetratricopeptide 99.5 2.1E-13 7.2E-18 124.1 15.7 159 87-256 4-175 (184)
51 1qqe_A Vesicular transport pro 99.5 1.5E-13 5E-18 136.9 15.1 166 56-226 39-233 (292)
52 1a17_A Serine/threonine protei 99.5 5.2E-13 1.8E-17 117.7 16.9 129 57-222 16-147 (166)
53 3upv_A Heat shock protein STI1 99.5 2.1E-13 7.1E-18 117.4 14.0 100 87-223 3-103 (126)
54 4g1t_A Interferon-induced prot 99.5 1.1E-12 3.8E-17 135.9 21.4 171 56-226 53-281 (472)
55 2vsy_A XCC0866; transferase, g 99.5 2.7E-13 9.2E-18 146.8 17.4 139 51-226 20-162 (568)
56 3nf1_A KLC 1, kinesin light ch 99.5 1.1E-12 3.6E-17 126.5 19.1 163 57-222 30-225 (311)
57 2pzi_A Probable serine/threoni 99.5 1.3E-13 4.3E-18 154.8 14.1 150 65-226 402-568 (681)
58 3fp2_A TPR repeat-containing p 99.5 6.3E-13 2.1E-17 139.1 18.1 158 57-226 246-412 (537)
59 4ga2_A E3 SUMO-protein ligase 99.5 3E-13 1E-17 122.3 13.4 115 56-207 33-149 (150)
60 4gcn_A Protein STI-1; structur 99.5 4.2E-13 1.4E-17 118.3 13.9 100 88-224 8-115 (127)
61 2gw1_A Mitochondrial precursor 99.5 1.1E-12 3.7E-17 135.9 19.2 61 53-113 38-98 (514)
62 2gw1_A Mitochondrial precursor 99.5 4.5E-13 1.5E-17 138.8 16.0 65 161-225 414-482 (514)
63 2yhc_A BAMD, UPF0169 lipoprote 99.5 1.1E-12 3.9E-17 125.1 17.0 170 57-226 7-218 (225)
64 1xnf_A Lipoprotein NLPI; TPR, 99.5 3.4E-13 1.2E-17 128.3 13.2 123 67-226 18-145 (275)
65 3u4t_A TPR repeat-containing p 99.5 6.9E-13 2.4E-17 126.6 15.4 159 57-226 77-255 (272)
66 1p5q_A FKBP52, FK506-binding p 99.5 8.4E-13 2.9E-17 135.2 16.7 129 56-221 149-294 (336)
67 3edt_B KLC 2, kinesin light ch 99.5 2.3E-12 7.7E-17 121.8 17.7 130 56-188 45-198 (283)
68 3q49_B STIP1 homology and U bo 99.4 2.6E-12 8.8E-17 110.8 16.2 106 83-225 4-110 (137)
69 4i17_A Hypothetical protein; T 99.4 1.3E-12 4.6E-17 123.0 15.0 130 85-224 4-149 (228)
70 1p5q_A FKBP52, FK506-binding p 99.4 1.2E-13 4E-18 141.6 7.9 137 68-226 127-264 (336)
71 2hr2_A Hypothetical protein; a 99.4 1.4E-12 4.6E-17 123.0 14.1 114 89-227 12-137 (159)
72 3rkv_A Putative peptidylprolyl 99.4 2.4E-12 8.1E-17 116.0 14.9 137 88-245 11-148 (162)
73 4abn_A Tetratricopeptide repea 99.4 1.1E-12 3.7E-17 140.6 14.7 158 49-218 132-318 (474)
74 1hxi_A PEX5, peroxisome target 99.4 7.5E-13 2.5E-17 115.9 10.9 100 90-226 19-119 (121)
75 2vyi_A SGTA protein; chaperone 99.4 4.2E-12 1.5E-16 106.3 15.1 112 60-208 18-130 (131)
76 3edt_B KLC 2, kinesin light ch 99.4 9.3E-13 3.2E-17 124.5 12.0 155 66-223 13-200 (283)
77 3upv_A Heat shock protein STI1 99.4 3.9E-12 1.3E-16 109.4 14.8 111 57-204 7-124 (126)
78 2lni_A Stress-induced-phosphop 99.4 1.9E-12 6.6E-17 109.6 12.6 109 61-206 23-132 (133)
79 2pzi_A Probable serine/threoni 99.4 1.3E-12 4.5E-17 146.5 14.3 159 51-220 430-597 (681)
80 3sz7_A HSC70 cochaperone (SGT) 99.4 3.4E-12 1.2E-16 115.2 14.2 110 57-203 14-124 (164)
81 3gyz_A Chaperone protein IPGC; 99.4 2.2E-12 7.5E-17 118.9 12.9 101 56-193 38-138 (151)
82 3ulq_A Response regulator aspa 99.4 6.7E-12 2.3E-16 128.0 16.7 161 60-224 109-296 (383)
83 2kck_A TPR repeat; tetratricop 99.4 1.4E-12 4.9E-17 106.8 9.4 106 84-226 2-111 (112)
84 2fbn_A 70 kDa peptidylprolyl i 99.4 4.5E-12 1.5E-16 117.9 13.8 127 57-220 41-185 (198)
85 2ifu_A Gamma-SNAP; membrane fu 99.4 7.5E-12 2.6E-16 125.4 16.1 164 56-226 38-228 (307)
86 2vq2_A PILW, putative fimbrial 99.4 2.7E-11 9.4E-16 111.0 18.2 132 84-226 4-147 (225)
87 2lni_A Stress-induced-phosphop 99.4 5.6E-12 1.9E-16 106.7 12.6 106 84-226 12-118 (133)
88 1ouv_A Conserved hypothetical 99.4 7.3E-11 2.5E-15 114.2 22.0 149 56-223 40-217 (273)
89 2vgx_A Chaperone SYCD; alterna 99.4 5.2E-12 1.8E-16 114.3 12.8 103 55-194 22-124 (148)
90 2fbn_A 70 kDa peptidylprolyl i 99.4 1.7E-12 5.7E-17 120.8 9.7 140 67-246 17-173 (198)
91 1ouv_A Conserved hypothetical 99.4 1.1E-10 3.6E-15 113.0 22.7 150 56-222 8-180 (273)
92 3sf4_A G-protein-signaling mod 99.4 3E-11 1E-15 120.8 19.4 57 59-115 52-114 (406)
93 2xcb_A PCRH, regulatory protei 99.4 6.4E-12 2.2E-16 111.5 12.9 107 56-199 20-127 (142)
94 1kt0_A FKBP51, 51 kDa FK506-bi 99.3 6.5E-13 2.2E-17 142.0 7.2 137 69-227 249-386 (457)
95 2xev_A YBGF; tetratricopeptide 99.3 6.2E-12 2.1E-16 107.3 11.8 100 90-226 4-110 (129)
96 2q7f_A YRRB protein; TPR, prot 99.3 3.8E-11 1.3E-15 112.0 18.2 146 51-207 88-242 (243)
97 4g1t_A Interferon-induced prot 99.3 7E-12 2.4E-16 129.8 14.5 50 67-116 151-203 (472)
98 1na0_A Designed protein CTPR3; 99.3 3.5E-11 1.2E-15 99.8 16.0 71 155-225 39-110 (125)
99 2vyi_A SGTA protein; chaperone 99.3 1.7E-11 5.7E-16 102.6 13.6 105 85-226 9-114 (131)
100 3q15_A PSP28, response regulat 99.3 3.7E-11 1.3E-15 122.8 19.0 164 58-225 105-294 (378)
101 4a1s_A PINS, partner of inscut 99.3 1.8E-11 6.2E-16 124.1 16.4 169 57-225 51-296 (411)
102 1elw_A TPR1-domain of HOP; HOP 99.3 1.9E-11 6.6E-16 100.6 13.6 102 88-226 4-106 (118)
103 2dba_A Smooth muscle cell asso 99.3 1.8E-11 6.2E-16 105.7 14.0 106 84-226 24-133 (148)
104 3ro2_A PINS homolog, G-protein 99.3 3.2E-11 1.1E-15 116.0 16.9 66 159-224 183-255 (338)
105 3rkv_A Putative peptidylprolyl 99.3 6.3E-12 2.2E-16 113.2 11.3 116 57-209 14-149 (162)
106 3urz_A Uncharacterized protein 99.3 1E-11 3.5E-16 117.5 13.2 102 88-226 4-122 (208)
107 1elr_A TPR2A-domain of HOP; HO 99.3 2.5E-11 8.5E-16 101.8 13.9 116 88-244 4-127 (131)
108 1wao_1 Serine/threonine protei 99.3 1.6E-12 5.6E-17 140.1 8.4 127 64-227 16-156 (477)
109 2ho1_A Type 4 fimbrial biogene 99.3 1.7E-11 5.7E-16 115.9 14.3 128 88-226 37-175 (252)
110 3qky_A Outer membrane assembly 99.3 4.1E-11 1.4E-15 115.7 16.9 138 81-226 8-182 (261)
111 4gcn_A Protein STI-1; structur 99.3 2.5E-11 8.5E-16 106.8 13.8 106 58-193 12-117 (127)
112 1elw_A TPR1-domain of HOP; HOP 99.3 7E-11 2.4E-15 97.2 15.1 109 57-202 7-116 (118)
113 3ro3_A PINS homolog, G-protein 99.3 2.7E-11 9.3E-16 104.3 13.1 137 57-224 12-161 (164)
114 1na0_A Designed protein CTPR3; 99.3 5.8E-11 2E-15 98.5 14.5 113 56-206 11-125 (125)
115 1hxi_A PEX5, peroxisome target 99.3 1.3E-11 4.4E-16 107.9 11.0 99 58-193 21-119 (121)
116 3sf4_A G-protein-signaling mod 99.3 4.9E-11 1.7E-15 119.3 16.7 163 57-224 90-299 (406)
117 1kt0_A FKBP51, 51 kDa FK506-bi 99.3 1.9E-11 6.5E-16 130.6 14.2 128 56-220 270-414 (457)
118 4a1s_A PINS, partner of inscut 99.3 3.5E-11 1.2E-15 122.0 15.5 137 88-224 48-255 (411)
119 3q49_B STIP1 homology and U bo 99.3 2.5E-11 8.5E-16 104.6 12.1 114 55-205 10-129 (137)
120 1a17_A Serine/threonine protei 99.3 5.7E-11 1.9E-15 104.5 14.5 102 88-226 13-115 (166)
121 2c2l_A CHIP, carboxy terminus 99.3 4E-12 1.4E-16 126.6 7.8 131 56-225 6-168 (281)
122 1qqe_A Vesicular transport pro 99.3 5.4E-11 1.8E-15 118.3 15.8 139 69-226 32-192 (292)
123 2ond_A Cleavage stimulation fa 99.3 2.2E-10 7.4E-15 114.4 19.9 169 42-221 37-232 (308)
124 2c2l_A CHIP, carboxy terminus 99.3 2.2E-11 7.5E-16 121.3 12.4 105 85-226 1-106 (281)
125 3mkr_A Coatomer subunit epsilo 99.3 4.9E-11 1.7E-15 119.7 15.0 164 62-225 7-199 (291)
126 2if4_A ATFKBP42; FKBP-like, al 99.3 4.3E-12 1.5E-16 130.3 7.2 129 60-225 185-332 (338)
127 2qfc_A PLCR protein; TPR, HTH, 99.3 6.2E-11 2.1E-15 117.3 15.3 64 160-223 197-268 (293)
128 3ro2_A PINS homolog, G-protein 99.3 6.8E-11 2.3E-15 113.6 15.0 164 57-225 8-216 (338)
129 2dba_A Smooth muscle cell asso 99.3 7.3E-11 2.5E-15 101.8 13.6 112 56-204 30-145 (148)
130 3u3w_A Transcriptional activat 99.3 4E-11 1.4E-15 118.7 13.4 130 64-223 125-268 (293)
131 3ulq_A Response regulator aspa 99.2 1.4E-10 4.9E-15 118.1 16.9 158 56-218 145-332 (383)
132 2xev_A YBGF; tetratricopeptide 99.2 2.4E-10 8.2E-15 97.3 15.4 112 58-206 6-124 (129)
133 3gw4_A Uncharacterized protein 99.2 7.3E-11 2.5E-15 107.6 12.7 138 56-224 28-179 (203)
134 2hr2_A Hypothetical protein; a 99.2 3.5E-11 1.2E-15 113.4 10.7 108 57-194 14-137 (159)
135 3k9i_A BH0479 protein; putativ 99.2 1.2E-11 4E-16 106.2 6.6 70 156-225 24-94 (117)
136 1ihg_A Cyclophilin 40; ppiase 99.2 6.4E-11 2.2E-15 123.7 13.6 113 92-226 227-341 (370)
137 1zu2_A Mitochondrial import re 99.2 1.9E-11 6.6E-16 115.1 8.5 97 69-226 17-125 (158)
138 3as5_A MAMA; tetratricopeptide 99.2 2.6E-10 9E-15 100.7 15.0 128 88-226 8-144 (186)
139 3k9i_A BH0479 protein; putativ 99.2 2.1E-11 7.2E-16 104.6 7.5 44 151-194 53-96 (117)
140 1elr_A TPR2A-domain of HOP; HO 99.2 1.5E-10 5.1E-15 97.0 12.6 113 57-207 7-127 (131)
141 3qou_A Protein YBBN; thioredox 99.2 3.3E-10 1.1E-14 112.9 16.5 131 84-225 113-252 (287)
142 2ond_A Cleavage stimulation fa 99.2 3.8E-10 1.3E-14 112.6 16.8 145 71-226 33-203 (308)
143 3n71_A Histone lysine methyltr 99.2 4.4E-11 1.5E-15 130.6 10.8 129 65-222 320-465 (490)
144 3rjv_A Putative SEL1 repeat pr 99.2 6.8E-10 2.3E-14 105.6 16.4 151 55-222 19-198 (212)
145 1ihg_A Cyclophilin 40; ppiase 99.2 2.2E-10 7.4E-15 119.7 14.1 81 134-214 274-363 (370)
146 3q15_A PSP28, response regulat 99.2 9.9E-10 3.4E-14 112.1 18.7 157 56-217 143-328 (378)
147 2qfc_A PLCR protein; TPR, HTH, 99.1 1.4E-09 4.7E-14 107.6 18.5 132 59-223 80-227 (293)
148 1hh8_A P67PHOX, NCF-2, neutrop 99.1 5.8E-10 2E-14 103.1 14.5 97 90-226 8-105 (213)
149 2fo7_A Synthetic consensus TPR 99.1 8.9E-10 3.1E-14 91.7 13.1 101 89-226 2-103 (136)
150 1hz4_A MALT regulatory protein 99.1 3.4E-09 1.1E-13 106.9 19.8 159 61-224 21-206 (373)
151 2kck_A TPR repeat; tetratricop 99.1 3.8E-10 1.3E-14 92.2 10.1 100 57-193 9-111 (112)
152 3ma5_A Tetratricopeptide repea 99.1 4.8E-10 1.6E-14 94.3 10.8 72 155-226 3-75 (100)
153 3gw4_A Uncharacterized protein 99.1 7.7E-10 2.6E-14 100.7 13.0 128 65-223 3-138 (203)
154 1wao_1 Serine/threonine protei 99.1 5.3E-11 1.8E-15 128.3 5.8 101 89-226 7-108 (477)
155 3nf1_A KLC 1, kinesin light ch 99.1 1.4E-09 4.9E-14 104.5 14.8 134 85-221 24-182 (311)
156 2if4_A ATFKBP42; FKBP-like, al 99.1 7E-11 2.4E-15 121.2 5.7 119 88-226 179-298 (338)
157 2kat_A Uncharacterized protein 99.1 9.5E-10 3.3E-14 93.2 11.8 75 151-225 11-86 (115)
158 2l6j_A TPR repeat-containing p 99.1 5.3E-11 1.8E-15 98.5 3.7 66 160-225 5-71 (111)
159 3u3w_A Transcriptional activat 99.1 1E-09 3.6E-14 108.5 13.6 131 61-225 82-229 (293)
160 4f3v_A ESX-1 secretion system 99.1 9.1E-10 3.1E-14 112.5 13.3 124 62-224 110-240 (282)
161 2r5s_A Uncharacterized protein 99.1 1.2E-09 4E-14 100.1 12.3 126 89-226 7-142 (176)
162 2e2e_A Formate-dependent nitri 99.1 1.9E-09 6.5E-14 97.6 13.6 111 47-194 37-150 (177)
163 2ifu_A Gamma-SNAP; membrane fu 99.0 1.6E-09 5.6E-14 108.4 13.5 130 91-226 39-189 (307)
164 2vsy_A XCC0866; transferase, g 99.0 4.7E-09 1.6E-13 113.6 17.7 113 50-199 53-169 (568)
165 2kat_A Uncharacterized protein 99.0 1.3E-09 4.6E-14 92.3 10.7 98 72-206 3-103 (115)
166 2yhc_A BAMD, UPF0169 lipoprote 99.0 1.7E-09 5.9E-14 103.0 12.4 131 88-226 4-181 (225)
167 2ooe_A Cleavage stimulation fa 99.0 8E-09 2.7E-13 110.6 18.0 150 67-226 292-459 (530)
168 1na3_A Designed protein CTPR2; 99.0 2.6E-09 8.8E-14 85.3 10.7 67 159-225 9-76 (91)
169 3rjv_A Putative SEL1 repeat pr 99.0 1.7E-09 5.7E-14 102.9 10.9 136 71-221 3-158 (212)
170 3dra_A Protein farnesyltransfe 99.0 3E-08 1E-12 102.0 20.3 148 68-226 47-220 (306)
171 1dce_A Protein (RAB geranylger 98.9 2.9E-09 1E-13 117.8 11.7 156 69-261 44-231 (567)
172 2l6j_A TPR repeat-containing p 98.9 5.7E-09 2E-13 86.1 10.6 82 136-217 7-103 (111)
173 4b4t_Q 26S proteasome regulato 98.9 3.2E-08 1.1E-12 101.1 17.1 159 62-226 12-209 (434)
174 1na3_A Designed protein CTPR2; 98.9 9.1E-09 3.1E-13 82.1 10.3 72 135-206 11-91 (91)
175 3n71_A Histone lysine methyltr 98.9 1.8E-09 6.3E-14 117.8 7.8 106 92-226 313-427 (490)
176 2ooe_A Cleavage stimulation fa 98.9 2.2E-08 7.4E-13 107.2 15.9 152 71-226 255-425 (530)
177 3ro3_A PINS homolog, G-protein 98.9 1.6E-08 5.5E-13 86.8 12.1 106 88-224 9-121 (164)
178 2xm6_A Protein corresponding t 98.9 7.3E-08 2.5E-12 102.1 19.3 68 155-224 359-435 (490)
179 1hz4_A MALT regulatory protein 98.9 1.1E-07 3.9E-12 95.7 19.6 58 59-116 98-163 (373)
180 2kc7_A BFR218_protein; tetratr 98.8 4.5E-09 1.5E-13 86.3 7.0 64 154-225 29-94 (99)
181 1dce_A Protein (RAB geranylger 98.8 2.1E-08 7E-13 111.0 14.2 120 70-226 89-226 (567)
182 1klx_A Cysteine rich protein B 98.8 3E-08 1E-12 88.9 12.6 110 67-221 8-126 (138)
183 2xm6_A Protein corresponding t 98.8 1.5E-07 5.2E-12 99.7 20.1 149 56-221 41-216 (490)
184 3q7a_A Farnesyltransferase alp 98.8 1.9E-07 6.6E-12 98.0 20.0 149 67-226 67-242 (349)
185 3mv2_B Coatomer subunit epsilo 98.8 2.6E-07 9E-12 95.5 20.1 162 54-226 100-287 (310)
186 3dss_A Geranylgeranyl transfer 98.8 2.4E-07 8.3E-12 96.5 19.3 157 66-226 41-227 (331)
187 3qww_A SET and MYND domain-con 98.8 4.5E-09 1.5E-13 113.0 6.3 70 157-226 338-416 (433)
188 3ly7_A Transcriptional activat 98.8 1.6E-07 5.5E-12 99.3 17.6 142 56-225 199-343 (372)
189 3ma5_A Tetratricopeptide repea 98.8 9.9E-09 3.4E-13 86.2 6.4 85 83-204 2-89 (100)
190 3bee_A Putative YFRE protein; 98.7 5.3E-08 1.8E-12 82.9 10.4 86 155-240 2-91 (93)
191 2kc7_A BFR218_protein; tetratr 98.7 7E-08 2.4E-12 79.0 10.7 87 163-253 4-92 (99)
192 4f3v_A ESX-1 secretion system 98.7 3.8E-09 1.3E-13 108.0 3.2 191 66-259 18-244 (282)
193 3qww_A SET and MYND domain-con 98.7 2.7E-08 9.3E-13 106.9 8.6 99 67-194 311-422 (433)
194 3e4b_A ALGK; tetratricopeptide 98.7 3.8E-07 1.3E-11 96.9 16.9 148 56-221 178-351 (452)
195 3qwp_A SET and MYND domain-con 98.7 8.2E-08 2.8E-12 102.9 11.7 113 64-205 297-426 (429)
196 3dra_A Protein farnesyltransfe 98.7 3.9E-07 1.3E-11 93.7 16.2 144 68-222 83-251 (306)
197 3qwp_A SET and MYND domain-con 98.6 2.3E-08 7.8E-13 107.2 6.9 70 157-226 327-405 (429)
198 3dss_A Geranylgeranyl transfer 98.6 5.9E-07 2E-11 93.6 16.8 146 70-226 90-272 (331)
199 3u64_A Protein TP_0956; tetrat 98.6 5.4E-07 1.8E-11 92.6 14.9 100 149-248 187-298 (301)
200 1xi4_A Clathrin heavy chain; a 98.5 2.5E-06 8.4E-11 102.8 18.5 164 55-226 1106-1314(1630)
201 3e4b_A ALGK; tetratricopeptide 98.3 2.6E-06 8.9E-11 90.4 12.6 133 69-219 160-314 (452)
202 1xi4_A Clathrin heavy chain; a 98.3 1.3E-05 4.3E-10 96.7 17.9 128 86-221 1103-1250(1630)
203 4b4t_Q 26S proteasome regulato 98.3 4.5E-06 1.5E-10 85.1 12.3 162 57-223 58-247 (434)
204 1b89_A Protein (clathrin heavy 98.2 4.3E-07 1.5E-11 98.2 3.6 138 56-218 34-174 (449)
205 2v5f_A Prolyl 4-hydroxylase su 98.2 1.4E-05 4.7E-10 68.1 12.0 68 159-226 5-80 (104)
206 1klx_A Cysteine rich protein B 98.1 3E-05 1E-09 69.1 12.9 97 60-199 31-136 (138)
207 3q7a_A Farnesyltransferase alp 98.1 5.6E-05 1.9E-09 79.3 16.3 138 68-208 103-258 (349)
208 1pc2_A Mitochondria fission pr 98.1 7.5E-06 2.6E-10 76.5 8.3 74 153-226 26-105 (152)
209 1zu2_A Mitochondrial import re 98.1 3E-06 1E-10 79.7 5.1 89 170-258 13-127 (158)
210 2v5f_A Prolyl 4-hydroxylase su 98.1 3.2E-05 1.1E-09 65.8 11.1 82 88-199 5-87 (104)
211 3mv2_B Coatomer subunit epsilo 98.0 4E-05 1.4E-09 79.2 13.1 137 73-223 85-242 (310)
212 1pc2_A Mitochondria fission pr 98.0 4.7E-05 1.6E-09 71.2 11.5 88 70-194 14-106 (152)
213 3bee_A Putative YFRE protein; 98.0 2.7E-05 9.1E-10 66.0 8.8 73 84-193 2-77 (93)
214 1b89_A Protein (clathrin heavy 97.8 2.3E-05 7.8E-10 84.8 7.7 194 56-253 63-274 (449)
215 4e6h_A MRNA 3'-END-processing 97.8 0.00053 1.8E-08 77.7 17.8 183 42-224 330-536 (679)
216 3u64_A Protein TP_0956; tetrat 97.6 9.9E-05 3.4E-09 75.9 7.7 107 70-218 179-295 (301)
217 1nzn_A CGI-135 protein, fissio 97.1 0.0011 3.8E-08 60.0 7.5 73 154-226 30-108 (126)
218 1nzn_A CGI-135 protein, fissio 96.7 0.011 3.8E-07 53.5 11.1 89 69-194 16-109 (126)
219 4g26_A Pentatricopeptide repea 96.7 0.024 8.1E-07 61.6 15.4 117 69-221 85-204 (501)
220 3ffl_A Anaphase-promoting comp 96.6 0.0083 2.8E-07 56.8 9.6 59 160-218 64-148 (167)
221 1y8m_A FIS1; mitochondria, unk 96.6 0.01 3.5E-07 54.9 9.9 71 156-226 36-111 (144)
222 4e6h_A MRNA 3'-END-processing 96.5 0.015 5.1E-07 65.9 13.0 133 57-226 437-575 (679)
223 3ly7_A Transcriptional activat 96.5 0.0072 2.5E-07 63.9 9.6 75 82-194 271-345 (372)
224 3o48_A Mitochondria fission 1 96.4 0.012 4E-07 53.9 9.0 68 159-226 40-112 (134)
225 4g26_A Pentatricopeptide repea 96.0 0.11 3.9E-06 56.2 15.8 130 65-221 37-169 (501)
226 2uy1_A Cleavage stimulation fa 95.7 0.3 1E-05 52.7 17.3 47 71-117 196-242 (493)
227 4gns_B Protein CSD3, chitin bi 95.3 0.22 7.4E-06 57.2 15.2 58 160-217 338-396 (754)
228 4h7y_A Dual specificity protei 94.8 0.19 6.6E-06 47.0 10.7 64 161-225 63-127 (161)
229 3mkq_A Coatomer beta'-subunit; 94.6 0.86 2.9E-05 50.1 17.3 100 62-185 607-707 (814)
230 2ff4_A Probable regulatory pro 94.6 0.18 6E-06 52.9 11.2 61 161-221 173-234 (388)
231 3ffl_A Anaphase-promoting comp 93.3 0.37 1.3E-05 45.5 9.5 130 60-202 26-165 (167)
232 3mkq_A Coatomer beta'-subunit; 93.1 0.72 2.5E-05 50.7 13.1 93 86-217 679-774 (814)
233 2uy1_A Cleavage stimulation fa 93.1 1.7 5.7E-05 46.8 15.7 51 175-226 195-246 (493)
234 1ya0_A SMG-7 transcript varian 92.8 0.29 9.9E-06 53.5 9.3 62 161-222 154-216 (497)
235 1y8m_A FIS1; mitochondria, unk 92.8 1.9 6.4E-05 39.8 13.1 75 86-194 37-112 (144)
236 3o48_A Mitochondria fission 1 92.7 1.1 3.7E-05 40.9 11.3 74 87-194 39-113 (134)
237 3mkq_B Coatomer subunit alpha; 92.0 4.2 0.00015 38.5 15.0 47 63-114 14-60 (177)
238 3kae_A CDC27, possible protein 90.4 5.4 0.00018 38.3 13.8 112 67-223 15-145 (242)
239 3kae_A CDC27, possible protein 89.1 9.7 0.00033 36.6 14.4 108 60-193 39-148 (242)
240 4b4t_R RPN7, 26S proteasome re 87.9 0.78 2.7E-05 48.6 7.0 101 88-222 131-238 (429)
241 3spa_A Mtrpol, DNA-directed RN 87.2 4.6 0.00016 48.1 13.3 100 89-221 128-230 (1134)
242 3txn_A 26S proteasome regulato 87.1 15 0.0005 38.9 16.1 22 89-110 20-41 (394)
243 4h7y_A Dual specificity protei 86.7 8.1 0.00028 36.1 12.1 53 155-207 90-142 (161)
244 4b4t_P 26S proteasome regulato 86.0 3.5 0.00012 44.0 10.7 102 90-222 139-248 (445)
245 1ya0_A SMG-7 transcript varian 85.8 2.4 8.4E-05 46.2 9.5 55 150-204 177-232 (497)
246 1zbp_A Hypothetical protein VP 83.3 2.7 9.4E-05 42.5 7.9 58 168-225 6-64 (273)
247 1zbp_A Hypothetical protein VP 79.3 28 0.00095 35.2 13.6 47 64-110 7-53 (273)
248 4b4t_S RPN3, 26S proteasome re 78.4 5.6 0.00019 43.7 8.8 66 159-226 231-304 (523)
249 2wpv_A GET4, UPF0363 protein Y 76.2 62 0.0021 33.0 15.5 65 157-221 132-217 (312)
250 4gns_B Protein CSD3, chitin bi 74.5 4.8 0.00016 46.2 7.2 46 65-110 348-393 (754)
251 1wy6_A Hypothetical protein ST 73.3 14 0.00046 34.4 8.5 60 162-221 93-154 (172)
252 2ff4_A Probable regulatory pro 69.8 11 0.00037 39.2 8.1 87 64-187 125-233 (388)
253 3spa_A Mtrpol, DNA-directed RN 67.9 11 0.00039 44.8 8.4 62 160-221 128-194 (1134)
254 4b4t_R RPN7, 26S proteasome re 65.3 9.1 0.00031 40.3 6.5 67 159-225 131-201 (429)
255 1qsa_A Protein (soluble lytic 63.9 43 0.0015 37.3 11.9 59 161-220 288-347 (618)
256 4b4t_P 26S proteasome regulato 63.7 58 0.002 34.4 12.5 153 67-220 29-205 (445)
257 4fhn_B Nucleoporin NUP120; pro 62.8 39 0.0013 40.0 12.0 120 84-217 838-963 (1139)
258 3mkq_B Coatomer subunit alpha; 61.7 18 0.00061 34.2 7.1 57 157-220 32-88 (177)
259 3txn_A 26S proteasome regulato 57.4 66 0.0023 33.9 11.4 29 161-189 182-211 (394)
260 3t5v_B Nuclear mRNA export pro 55.8 34 0.0012 36.8 9.0 92 162-253 179-282 (455)
261 3t5x_A PCI domain-containing p 44.5 41 0.0014 31.9 6.7 36 159-194 14-49 (203)
262 1qsa_A Protein (soluble lytic 44.0 1.9E+02 0.0065 32.1 12.9 135 63-216 294-437 (618)
263 4fhn_B Nucleoporin NUP120; pro 43.4 1.1E+02 0.0037 36.3 11.4 70 155-224 838-931 (1139)
264 4gq2_M Nucleoporin NUP120; bet 42.6 1.3E+02 0.0044 35.1 11.7 68 155-222 836-927 (950)
265 3lpz_A GET4 (YOR164C homolog); 38.5 3.5E+02 0.012 27.9 18.0 28 156-183 133-160 (336)
266 2v6y_A AAA family ATPase, P60 37.8 39 0.0013 27.7 4.6 23 163-185 15-37 (83)
267 2w2u_A Hypothetical P60 katani 37.2 40 0.0014 27.8 4.6 24 162-185 22-45 (83)
268 3ax2_A Mitochondrial import re 35.9 41 0.0014 27.4 4.3 32 163-194 21-52 (73)
269 2crb_A Nuclear receptor bindin 35.2 50 0.0017 28.3 4.9 26 161-186 17-42 (97)
270 2w2u_A Hypothetical P60 katani 33.4 45 0.0016 27.4 4.4 33 175-221 16-48 (83)
271 1wy6_A Hypothetical protein ST 33.1 1.5E+02 0.0052 27.5 8.1 62 53-114 89-151 (172)
272 2v6y_A AAA family ATPase, P60 32.2 49 0.0017 27.1 4.4 33 175-221 8-40 (83)
273 4b4t_S RPN3, 26S proteasome re 29.0 1.1E+02 0.0036 33.7 7.5 35 159-193 270-304 (523)
274 4gq2_M Nucleoporin NUP120; bet 27.2 71 0.0024 37.2 6.2 52 165-220 816-868 (950)
275 4a5x_A MITD1, MIT domain-conta 26.0 88 0.003 25.8 4.9 26 162-187 19-44 (86)
276 1wfd_A Hypothetical protein 15 24.3 79 0.0027 26.4 4.4 25 162-186 18-42 (93)
277 2crb_A Nuclear receptor bindin 23.9 72 0.0025 27.3 3.9 26 196-221 19-44 (97)
278 2v6x_A Vacuolar protein sortin 23.6 1E+02 0.0036 24.9 4.9 24 163-186 17-40 (85)
279 3ax2_A Mitochondrial import re 23.5 90 0.0031 25.3 4.3 30 195-224 20-49 (73)
280 1om2_A Protein (mitochondrial 23.5 61 0.0021 27.7 3.5 31 163-193 24-54 (95)
281 2cpt_A SKD1 protein, vacuolar 22.4 95 0.0033 27.1 4.6 24 163-186 22-45 (117)
282 2rpa_A Katanin P60 ATPase-cont 22.3 65 0.0022 26.5 3.3 25 163-187 16-40 (78)
283 2wpv_A GET4, UPF0363 protein Y 22.2 6.2E+02 0.021 25.5 14.8 84 86-187 132-216 (312)
284 4ady_A RPN2, 26S proteasome re 21.0 2.8E+02 0.0096 32.7 9.4 57 163-220 528-588 (963)
285 3re2_A Predicted protein; meni 20.5 5E+02 0.017 27.5 10.2 86 159-244 255-352 (472)
286 3lpz_A GET4 (YOR164C homolog); 20.2 7.1E+02 0.024 25.5 17.3 95 72-187 120-215 (336)
No 1
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.81 E-value=1e-18 Score=159.39 Aligned_cols=159 Identities=11% Similarity=0.076 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHH
Q 038048 56 PYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAF 135 (575)
Q Consensus 56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~ 135 (575)
-|...+..+...|++++|+.+|+++|+.+|++..++++||.+|..+|++++|+..+...+.... .....
T Consensus 7 iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~~ 75 (184)
T 3vtx_A 7 IYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-----------TSAEA 75 (184)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-----------CCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-----------hhHHH
Confidence 4667788889999999999999999999999999999999999999999999998655433211 11111
Q ss_pred HhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcC
Q 038048 136 AGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMN 206 (575)
Q Consensus 136 ~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qG 206 (575)
+..++..+...++ ..++.++|++..++..+|.+|..+|++++|+.+|+++++++|++.. +++||.+|..+|
T Consensus 76 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g 155 (184)
T 3vtx_A 76 YYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKG 155 (184)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCC
Confidence 2222222222222 3457789999999999999999999999999999999999999999 999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCC
Q 038048 207 RVTEAKSLLQAVKISAGNR 225 (575)
Q Consensus 207 r~eEAi~lLekALel~P~n 225 (575)
++++|+.+|+++++++|++
T Consensus 156 ~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 156 LRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp CHHHHHHHHHHHHHTTHHH
T ss_pred CHHHHHHHHHHHHhCCccC
Confidence 9999999999999998853
No 2
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.78 E-value=1.7e-17 Score=158.48 Aligned_cols=163 Identities=18% Similarity=0.088 Sum_probs=135.9
Q ss_pred CCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHH
Q 038048 52 SGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEE 131 (575)
Q Consensus 52 s~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~ 131 (575)
.....+...+..+...+++++|+..|+++++.+|++..+++++|.+|.++|++++|+..+..+++... .
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-----------~ 71 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-----------R 71 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------T
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------C
Confidence 33445666777888999999999999999999999999999999999999999999999766554322 2
Q ss_pred HHHHHhHHHHHHHHh-----------ch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 038048 132 GIAFAGVKTKMARSQ-----------GK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDM 192 (575)
Q Consensus 132 a~a~~~nla~al~sq-----------g~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn 192 (575)
....+.+++.++... |+ ..++.++|++..+++++|.+|..+|++++|+..|++|++++ ++
T Consensus 72 ~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~ 150 (217)
T 2pl2_A 72 YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DT 150 (217)
T ss_dssp CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CC
T ss_pred cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cc
Confidence 222233333333333 33 45688899999999999999999999999999999999999 88
Q ss_pred HH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 193 NK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 193 ~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
+. +++||.+|..+|++++|+..|+++++++|++.
T Consensus 151 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~ 185 (217)
T 2pl2_A 151 PEIRSALAELYLSMGRLDEALAQYAKALEQAPKDL 185 (217)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence 88 99999999999999999999999999999764
No 3
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.71 E-value=6.8e-17 Score=183.82 Aligned_cols=159 Identities=19% Similarity=0.171 Sum_probs=130.6
Q ss_pred cHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHH
Q 038048 55 SPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIA 134 (575)
Q Consensus 55 ~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a 134 (575)
..|...+.++...|++++|+.+|++||+++|++..++++||.+|.++|++++|++++.++++. .+....
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l-----------~P~~~~ 78 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI-----------SPTFAD 78 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------CTTCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------CCCCHH
Confidence 456677788899999999999999999999999999999999999999999999997665442 233334
Q ss_pred HHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHc
Q 038048 135 FAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHM 205 (575)
Q Consensus 135 ~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~q 205 (575)
.+.+++.++...|+ ++++.++|++..++++||.+|..+|++++|+.+|++||+++|++.. ++|||.+|..+
T Consensus 79 a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~ 158 (723)
T 4gyw_A 79 AYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIV 158 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhc
Confidence 45566666666665 4567788888888888888888888888888888888888888888 88888888888
Q ss_pred CCHHHHHHHHHHHHHHcCC
Q 038048 206 NRVTEAKSLLQAVKISAGN 224 (575)
Q Consensus 206 Gr~eEAi~lLekALel~P~ 224 (575)
|++++|++.+++++++.|+
T Consensus 159 g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 159 CDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp TCCTTHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhChh
Confidence 8888888888888887654
No 4
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.70 E-value=6.7e-16 Score=145.77 Aligned_cols=143 Identities=13% Similarity=0.042 Sum_probs=93.5
Q ss_pred cHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHH
Q 038048 55 SPYVRAKHIQLIDKDPSRAVSLFWAAINAGD-RVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGI 133 (575)
Q Consensus 55 ~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p-~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~ 133 (575)
..+...+..++..+++++|+.+|.+++..+| .+..+++++|.+|..+|++++|+..+..+++. .+...
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----------~p~~~ 76 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK-----------NYNLA 76 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----------TCSHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh-----------CcchH
Confidence 3456677888899999999999999999998 88889999999999999999999985543321 11112
Q ss_pred HHHhHHHHHHHHhch--------hhHHhhcCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHH-H
Q 038048 134 AFAGVKTKMARSQGK--------KIQITVEQEKS-------RILGNLAWAYMQQNNFEMAEQYYRKALSLGVD--MNK-Q 195 (575)
Q Consensus 134 a~~~nla~al~sqg~--------k~aL~L~Pd~~-------~a~~nLG~aY~~qGryeEAe~~yrkALeidPd--n~~-~ 195 (575)
..+..++.++...|+ +.++.++|++. .+++++|.++..+|++++|+.+|++|++++|+ +.. +
T Consensus 77 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 156 (228)
T 4i17_A 77 NAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDAL 156 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHH
Confidence 223333333333333 23344555555 34555566666666666666666666666665 555 5
Q ss_pred HHHHHHHHHcCCH
Q 038048 196 CNLAICLMHMNRV 208 (575)
Q Consensus 196 ~NLA~iy~~qGr~ 208 (575)
++||.+|..+|+.
T Consensus 157 ~~l~~~~~~~~~~ 169 (228)
T 4i17_A 157 YSLGVLFYNNGAD 169 (228)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5566666555555
No 5
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.70 E-value=1.4e-15 Score=152.76 Aligned_cols=75 Identities=13% Similarity=0.081 Sum_probs=40.8
Q ss_pred HHhhcCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048 151 QITVEQE--KSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNR 225 (575)
Q Consensus 151 aL~L~Pd--~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n 225 (575)
++.+.|+ +..+++++|.+|..+|++++|+.+|+++++++|++.. +++||.+|..+|++++|+.+|+++++++|++
T Consensus 203 al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 280 (365)
T 4eqf_A 203 AAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGF 280 (365)
T ss_dssp HHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 3444555 4555555555555555555555555555555555555 5555555555555555555555555555543
No 6
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.69 E-value=5.2e-16 Score=155.78 Aligned_cols=174 Identities=17% Similarity=0.139 Sum_probs=124.5
Q ss_pred CCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCH-----------------
Q 038048 53 GDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRI----------------- 115 (575)
Q Consensus 53 ~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaL----------------- 115 (575)
....+...+.++...+++++|+.+|++++..+|.+..++++||.+|..+|++++|+.++...+
T Consensus 98 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 177 (365)
T 4eqf_A 98 DAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSP 177 (365)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC--------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccch
Confidence 333444455555566666666666666666666666666666666666666666666633322
Q ss_pred ----------------HHHHHHHHHHHHhhHH--HHHHHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHH
Q 038048 116 ----------------EEEIELLQNKLKNIEE--GIAFAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAY 169 (575)
Q Consensus 116 ----------------eeAi~lL~~~L~l~~~--a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY 169 (575)
++++..+...+...+. ....+.+++.++...|+ +.++.+.|++..+++++|.+|
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 257 (365)
T 4eqf_A 178 GLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATL 257 (365)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 2233333333333222 33455667777777666 346778899999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 170 MQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 170 ~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
..+|++++|+.+|+++++++|++.. +++||.+|..+|++++|+.+|++++++.|++.
T Consensus 258 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 315 (365)
T 4eqf_A 258 ANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSR 315 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC-
T ss_pred HHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccC
Confidence 9999999999999999999999998 99999999999999999999999999998765
No 7
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.69 E-value=5.2e-16 Score=157.43 Aligned_cols=177 Identities=15% Similarity=0.095 Sum_probs=128.6
Q ss_pred CCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHH------------------
Q 038048 50 VPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEAR------------------ 111 (575)
Q Consensus 50 ~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~------------------ 111 (575)
.|.....+...+..+...|++++|+.+|++++..+|++..+++++|.+|...|++++|+..+
T Consensus 63 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 142 (388)
T 1w3b_A 63 NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLG 142 (388)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 34444455566666777788888888888888888888778888888888888888887763
Q ss_pred -----hcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHH
Q 038048 112 -----SGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMA 178 (575)
Q Consensus 112 -----~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEA 178 (575)
.+.+++++..+...+...+.....+.+++..+...|+ +.++.++|++..++.++|.+|...|++++|
T Consensus 143 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A 222 (388)
T 1w3b_A 143 NLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRA 222 (388)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 2444555555555554444444455666666666665 345677888888888888888888888888
Q ss_pred HHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 179 EQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 179 e~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
+..|++++.++|++.. +.++|.+|..+|++++|+.+|+++++++|++.
T Consensus 223 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 271 (388)
T 1w3b_A 223 VAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFP 271 (388)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCH
T ss_pred HHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Confidence 8888888888888887 78888888888888888888888888877654
No 8
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.68 E-value=2.8e-17 Score=148.89 Aligned_cols=127 Identities=13% Similarity=0.072 Sum_probs=115.0
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHH
Q 038048 63 IQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKM 142 (575)
Q Consensus 63 l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~a 142 (575)
++...+++++|+..|++++..+|..+.++++||.+|.++|+|++|++++..
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~----------------------------- 56 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICT----------------------------- 56 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHH-----------------------------
T ss_pred HHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHH-----------------------------
Confidence 334456899999999999999998888999999999999999999998543
Q ss_pred HHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHH-HHHHHH
Q 038048 143 ARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSL-LQAVKI 220 (575)
Q Consensus 143 l~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~l-LekALe 220 (575)
++.++|+++.+|++||.+|..+|++++|+.+|+++++++|++.. +++||.+|..+|++++|... ++++++
T Consensus 57 --------al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 57 --------YINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp --------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred --------HHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 35679999999999999999999999999999999999999999 99999999999999887765 699999
Q ss_pred HcCCCC
Q 038048 221 SAGNRQ 226 (575)
Q Consensus 221 l~P~n~ 226 (575)
++|+++
T Consensus 129 l~P~~~ 134 (150)
T 4ga2_A 129 LFPGSP 134 (150)
T ss_dssp HSTTCH
T ss_pred hCcCCH
Confidence 999875
No 9
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.68 E-value=1.2e-16 Score=147.45 Aligned_cols=127 Identities=16% Similarity=0.115 Sum_probs=113.0
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhh
Q 038048 75 SLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITV 154 (575)
Q Consensus 75 ~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L 154 (575)
..|++++.++|++..+++++|.+|.++|++++|+.++.. ++.+
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~-------------------------------------al~~ 65 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRF-------------------------------------LCIY 65 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------------------------HHHH
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-------------------------------------HHHh
Confidence 456788889999999999999999999999999998544 3567
Q ss_pred cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCChhHHH
Q 038048 155 EQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMDTSYSR 233 (575)
Q Consensus 155 ~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~~~~~l~ 233 (575)
+|+++.+|++||.+|..+|+|++|+.+|++|++++|+++. +++||.+|..+|++++|+..|++++++.|+..
T Consensus 66 ~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~------- 138 (151)
T 3gyz_A 66 DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK------- 138 (151)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH-------
T ss_pred CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH-------
Confidence 9999999999999999999999999999999999999999 99999999999999999999999999988532
Q ss_pred HHHHHHHHHHHh
Q 038048 234 SFERAIQMLTEL 245 (575)
Q Consensus 234 slerA~elL~el 245 (575)
-.++|+.++..+
T Consensus 139 ~~~~A~~ll~~l 150 (151)
T 3gyz_A 139 LKIKAQSYLDAI 150 (151)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 345666666543
No 10
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.68 E-value=4.4e-15 Score=139.38 Aligned_cols=143 Identities=14% Similarity=0.135 Sum_probs=75.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCc-------HHHHHHHHHHHHHCCCHHHHHHHHhcCHH-------------
Q 038048 57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDRV-------DSALKDMAVVMKQLDRSDEAIEARSGRIE------------- 116 (575)
Q Consensus 57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~-------~~Al~nLA~iy~qqGrydEAie~~~gaLe------------- 116 (575)
+...+..+...+++++|+.+|++++..+|.. ..+++.+|.+|...|++++|+.++...+.
T Consensus 41 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 120 (258)
T 3uq3_A 41 LNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRN 120 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhH
Confidence 3334444455555555555555555554433 34555555555555555555555333322
Q ss_pred --HHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048 117 --EEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK 194 (575)
Q Consensus 117 --eAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~ 194 (575)
+++..+.. ++.++|....++.++|.+|..+|++++|+.+|+++++++|++..
T Consensus 121 ~~~a~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 174 (258)
T 3uq3_A 121 AEKELKKAEA--------------------------EAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDAR 174 (258)
T ss_dssp HHHHHHHHHH--------------------------HHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHH--------------------------HHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHH
Confidence 11122222 23345555555555666666666666666666666666655555
Q ss_pred -HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048 195 -QCNLAICLMHMNRVTEAKSLLQAVKISAGNR 225 (575)
Q Consensus 195 -~~NLA~iy~~qGr~eEAi~lLekALel~P~n 225 (575)
++++|.+|..+|++++|+.+|+++++.+|++
T Consensus 175 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 206 (258)
T 3uq3_A 175 GYSNRAAALAKLMSFPEAIADCNKAIEKDPNF 206 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHH
Confidence 5555666666666666666666665555543
No 11
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.68 E-value=1.2e-15 Score=154.72 Aligned_cols=177 Identities=19% Similarity=0.189 Sum_probs=144.1
Q ss_pred CCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhc----------------
Q 038048 50 VPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSG---------------- 113 (575)
Q Consensus 50 ~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~g---------------- 113 (575)
.|.....+...+..+...|++++|+..|++++..+|+...++..+|.++..+|++++|+.++..
T Consensus 97 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 176 (388)
T 1w3b_A 97 KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLG 176 (388)
T ss_dssp CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3444445666667777788888898888888888888888888888888888888888887433
Q ss_pred -------CHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHH
Q 038048 114 -------RIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMA 178 (575)
Q Consensus 114 -------aLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEA 178 (575)
.+++++..+...+...+.....+.+++..+...++ ..++.++|++..+++++|.+|..+|++++|
T Consensus 177 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 256 (388)
T 1w3b_A 177 CVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLA 256 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHH
Confidence 34445555555555444445566677777777666 346788999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 179 EQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 179 e~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
+.+|+++++++|+++. +.+||.+|..+|++++|+.+|++++++.|.+.
T Consensus 257 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 305 (388)
T 1w3b_A 257 IDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHA 305 (388)
T ss_dssp HHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccH
Confidence 9999999999999999 99999999999999999999999999998764
No 12
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.68 E-value=7.2e-15 Score=146.25 Aligned_cols=75 Identities=13% Similarity=0.117 Sum_probs=42.8
Q ss_pred HHhhcCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048 151 QITVEQE--KSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNR 225 (575)
Q Consensus 151 aL~L~Pd--~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n 225 (575)
++.++|+ ...+++++|.+|..+|++++|+.+|+++++++|++.. ++++|.+|..+|++++|+.+|++++++.|++
T Consensus 207 a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 284 (368)
T 1fch_A 207 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY 284 (368)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 3444555 4555555555555555555555555555555555555 5555555555555555555555555555543
No 13
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.67 E-value=3.3e-16 Score=142.04 Aligned_cols=136 Identities=15% Similarity=0.127 Sum_probs=117.4
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHH
Q 038048 73 AVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQI 152 (575)
Q Consensus 73 Ai~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL 152 (575)
+...|++++.++|....+++++|.++..+|++++|+.++.. ++
T Consensus 6 ~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~-------------------------------------al 48 (148)
T 2vgx_A 6 GGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQA-------------------------------------LC 48 (148)
T ss_dssp CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------------------------HH
T ss_pred hhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHH-------------------------------------HH
Confidence 34568899999999999999999999999999999998533 35
Q ss_pred hhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCChhH
Q 038048 153 TVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMDTSY 231 (575)
Q Consensus 153 ~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~~~~~ 231 (575)
.++|++..+++++|.+|..+|++++|+.+|++|++++|+++. ++++|.+|..+|++++|+.+|++++++.|+++. +
T Consensus 49 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---~ 125 (148)
T 2vgx_A 49 VLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPE---F 125 (148)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGG---G
T ss_pred HcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCc---c
Confidence 679999999999999999999999999999999999999999 999999999999999999999999999997652 2
Q ss_pred HHHHHHHHHHHHHhccc
Q 038048 232 SRSFERAIQMLTELESP 248 (575)
Q Consensus 232 l~slerA~elL~ele~a 248 (575)
.....++..++..+...
T Consensus 126 ~~~~~~~~~~l~~l~~~ 142 (148)
T 2vgx_A 126 XELSTRVSSMLEAIKLK 142 (148)
T ss_dssp HHHHHHHHHHHHHC---
T ss_pred hHHHHHHHHHHHHHHhH
Confidence 34456677777665544
No 14
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.67 E-value=1.4e-15 Score=144.20 Aligned_cols=112 Identities=16% Similarity=0.046 Sum_probs=96.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHH----------------HHHHHHHCCCHHHHHHHHhcCHHHHHHH
Q 038048 58 VRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKD----------------MAVVMKQLDRSDEAIEARSGRIEEEIEL 121 (575)
Q Consensus 58 arA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~n----------------LA~iy~qqGrydEAie~~~gaLeeAi~l 121 (575)
...+...+..|++++|+.+|++++..+|++..+++. +|.+|..+|++++|+..+..
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~-------- 79 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKE-------- 79 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH--------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHH--------
Confidence 344566788999999999999999999999999999 99999999999999998544
Q ss_pred HHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHH
Q 038048 122 LQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAI 200 (575)
Q Consensus 122 L~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~ 200 (575)
++.++|++..+++++|.+|..+|++++|+.+|+++++++|++.. +++||.
T Consensus 80 -----------------------------al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 130 (208)
T 3urz_A 80 -----------------------------LLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGN 130 (208)
T ss_dssp -----------------------------HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred -----------------------------HHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 35668888889999999999999999999999999999999888 888888
Q ss_pred HHHHcC
Q 038048 201 CLMHMN 206 (575)
Q Consensus 201 iy~~qG 206 (575)
+|..+|
T Consensus 131 ~~~~~~ 136 (208)
T 3urz_A 131 YYYLTA 136 (208)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 775554
No 15
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.66 E-value=1.1e-15 Score=145.99 Aligned_cols=166 Identities=14% Similarity=0.063 Sum_probs=123.5
Q ss_pred hhhHh-hcCCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHC-----------CCHHHHHHH
Q 038048 43 IFHVI-HKVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQL-----------DRSDEAIEA 110 (575)
Q Consensus 43 ~y~~~-~~~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qq-----------GrydEAie~ 110 (575)
.|... ...|.....+...+.++...|++++|+..|+++++++|++..++++||.+|..+ |++++|+..
T Consensus 27 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~ 106 (217)
T 2pl2_A 27 LFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSV 106 (217)
T ss_dssp HHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHH
Confidence 34433 344555556667778888999999999999999999999999999999999999 999999988
Q ss_pred HhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 038048 111 RSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYY 182 (575)
Q Consensus 111 ~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~y 182 (575)
+..+++. .+.....+.+++.++...|+ +.++.++ +++.+++++|.+|..+|++++|+..|
T Consensus 107 ~~~al~~-----------~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~ 174 (217)
T 2pl2_A 107 LKDAERV-----------NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQY 174 (217)
T ss_dssp HHHHHHH-----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHh-----------CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6555443 33333445556666666665 3567788 88999999999999999999999999
Q ss_pred HHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038048 183 RKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKI 220 (575)
Q Consensus 183 rkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALe 220 (575)
+++++++|++.. +++||.+|..+|++++|+..|+++-.
T Consensus 175 ~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 175 AKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHTC----------------
T ss_pred HHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 999999999999 99999999999999999999998754
No 16
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.66 E-value=8.2e-16 Score=135.99 Aligned_cols=109 Identities=13% Similarity=0.100 Sum_probs=100.5
Q ss_pred HHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHH
Q 038048 81 INAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSR 160 (575)
Q Consensus 81 L~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~ 160 (575)
..++|+.+.++.++|.+|.++|+|++|+..+.. ++.++|++..
T Consensus 6 a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~-------------------------------------al~~~p~~~~ 48 (126)
T 4gco_A 6 AYINPELAQEEKNKGNEYFKKGDYPTAMRHYNE-------------------------------------AVKRDPENAI 48 (126)
T ss_dssp -CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------------------------HHHHCTTCHH
T ss_pred HHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-------------------------------------HHHhCCCCHH
Confidence 356788888999999999999999999998544 3567999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 161 ILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 161 a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
+++++|.+|..+|++++|+..|++||+++|++.. ++++|.+|..+|++++|+..|+++++++|++.
T Consensus 49 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~ 115 (126)
T 4gco_A 49 LYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNE 115 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCH
Confidence 9999999999999999999999999999999999 99999999999999999999999999999865
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.66 E-value=1.1e-14 Score=141.75 Aligned_cols=202 Identities=6% Similarity=-0.036 Sum_probs=141.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCC-CHHHHHHHH-----------------------hcCH
Q 038048 60 AKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLD-RSDEAIEAR-----------------------SGRI 115 (575)
Q Consensus 60 A~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqG-rydEAie~~-----------------------~gaL 115 (575)
.+..+...+++++|+.+|.+++..+|.+..+++.+|.++...| ++++|+.++ .+.+
T Consensus 62 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 141 (330)
T 3hym_B 62 HIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEH 141 (330)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCH
Confidence 3344566678888888888888888888888888888888888 888888772 3344
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038048 116 EEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALS 187 (575)
Q Consensus 116 eeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALe 187 (575)
++++..+...+...+.....+..++.++...|+ ..++.+.|++..+++++|.+|..+|++++|+.+|+++++
T Consensus 142 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 221 (330)
T 3hym_B 142 DQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALE 221 (330)
T ss_dssp HHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 445555555554333323334445666665555 345777888888888999999999999999999999988
Q ss_pred hC---------CCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCCh----hHHHHHHHHHHHHHHhccccccCc
Q 038048 188 LG---------VDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMDT----SYSRSFERAIQMLTELESPSVLKL 253 (575)
Q Consensus 188 id---------Pdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~~~----~~l~slerA~elL~ele~al~~~p 253 (575)
+. |.... +.++|.+|..+|++++|+.+|++++++.|++.... ......++..+++..++.++.+.|
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 301 (330)
T 3hym_B 222 KIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301 (330)
T ss_dssp HHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred HhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence 86 55566 88889999999999999999999998888764211 112233445556666666777777
Q ss_pred ccccccch
Q 038048 254 TELEVGDD 261 (575)
Q Consensus 254 ~~~e~~~~ 261 (575)
.....+..
T Consensus 302 ~~~~~~~~ 309 (330)
T 3hym_B 302 DDTFSVTM 309 (330)
T ss_dssp CCHHHHHH
T ss_pred CchHHHHH
Confidence 66654444
No 18
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.65 E-value=2.9e-15 Score=157.91 Aligned_cols=160 Identities=13% Similarity=0.071 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCC-HHHHHHHHhcCHHHHHHHHHHHHHhhHHHHH
Q 038048 56 PYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDR-SDEAIEARSGRIEEEIELLQNKLKNIEEGIA 134 (575)
Q Consensus 56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGr-ydEAie~~~gaLeeAi~lL~~~L~l~~~a~a 134 (575)
.|...+.++...+++++|+.+|+++|.++|++..+++++|.+|..+|+ +++|+.++..++. ..+....
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~-----------l~P~~~~ 167 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE-----------EQPKNYQ 167 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-----------HCTTCHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHH-----------HCCCCHH
Confidence 344556667778999999999999999999999999999999999997 9999998655433 2223334
Q ss_pred HHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH-
Q 038048 135 FAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMH- 204 (575)
Q Consensus 135 ~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~- 204 (575)
.+.+++.++...|+ ..++.++|++..+|+++|.+|..+|++++|+.+|+++|+++|++.. ++++|.+|..
T Consensus 168 a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l 247 (382)
T 2h6f_A 168 VWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNT 247 (382)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 44555555555555 4567778888888888888888888888888888888888888887 8888888887
Q ss_pred cCCHHHH-----HHHHHHHHHHcCCCC
Q 038048 205 MNRVTEA-----KSLLQAVKISAGNRQ 226 (575)
Q Consensus 205 qGr~eEA-----i~lLekALel~P~n~ 226 (575)
.|.+++| +.+|++++.++|++.
T Consensus 248 ~~~~~eA~~~~el~~~~~Al~l~P~~~ 274 (382)
T 2h6f_A 248 TGYNDRAVLEREVQYTLEMIKLVPHNE 274 (382)
T ss_dssp TCSCSHHHHHHHHHHHHHHHHHSTTCH
T ss_pred cCcchHHHHHHHHHHHHHHHHHCCCCH
Confidence 5554777 477888888887654
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.64 E-value=6.4e-15 Score=143.29 Aligned_cols=178 Identities=13% Similarity=0.061 Sum_probs=147.1
Q ss_pred cCCCCCcHHHHHHHHHHHcC-ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHH----------------
Q 038048 49 KVPSGDSPYVRAKHIQLIDK-DPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEAR---------------- 111 (575)
Q Consensus 49 ~~ps~d~~yarA~~l~l~~k-d~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~---------------- 111 (575)
..|.....+...+..+...+ ++++|+.+|++++..+|....++..+|.+|...|++++|+.++
T Consensus 85 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 164 (330)
T 3hym_B 85 LYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLY 164 (330)
T ss_dssp HCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHH
T ss_pred hCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHH
Confidence 44555556666777778888 9999999999999999999999999999999999999999883
Q ss_pred -------hcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch--------hhHHhhc---------CCcHHHHHHHHH
Q 038048 112 -------SGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK--------KIQITVE---------QEKSRILGNLAW 167 (575)
Q Consensus 112 -------~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~--------k~aL~L~---------Pd~~~a~~nLG~ 167 (575)
.+.+++++..+...+...+.....+..++..+...|+ ..++.+. |....++.++|.
T Consensus 165 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~ 244 (330)
T 3hym_B 165 IGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGH 244 (330)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHH
Confidence 3445556666666665555555566777777777776 2334443 666789999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 168 AYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 168 aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
+|..+|++++|+.+|+++++++|++.. +++||.+|..+|++++|+.+|+++++++|++.
T Consensus 245 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 304 (330)
T 3hym_B 245 VCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDT 304 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCH
T ss_pred HHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCch
Confidence 999999999999999999999999999 99999999999999999999999999999764
No 20
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.64 E-value=3.3e-15 Score=139.67 Aligned_cols=156 Identities=8% Similarity=0.012 Sum_probs=79.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhH
Q 038048 59 RAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGV 138 (575)
Q Consensus 59 rA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~n 138 (575)
..+..+...+++++|+.+|++++..+|....+++.+|.+|...|++++|+.++...++.. +.....+..
T Consensus 62 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----------~~~~~~~~~ 130 (243)
T 2q7f_A 62 NFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-----------MENGDLFYM 130 (243)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-----------CCSHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----------CCCHHHHHH
Confidence 334444555566666666666666555555555566666666666666655533322211 001111222
Q ss_pred HHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHH
Q 038048 139 KTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVT 209 (575)
Q Consensus 139 la~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~e 209 (575)
++.++...|+ ..++.+.|++..++..+|.+|..+|++++|+.+|+++++++|++.. +.++|.+|..+|+++
T Consensus 131 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 210 (243)
T 2q7f_A 131 LGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENRE 210 (243)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHH
Confidence 2222222222 1234445555555555555555555555555555555555555555 555555555555555
Q ss_pred HHHHHHHHHHHHcCCC
Q 038048 210 EAKSLLQAVKISAGNR 225 (575)
Q Consensus 210 EAi~lLekALel~P~n 225 (575)
+|+.+|++++++.|++
T Consensus 211 ~A~~~~~~~~~~~p~~ 226 (243)
T 2q7f_A 211 KALEMLDKAIDIQPDH 226 (243)
T ss_dssp HHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHccCcch
Confidence 5555555555555543
No 21
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.64 E-value=1.3e-14 Score=140.40 Aligned_cols=186 Identities=16% Similarity=0.020 Sum_probs=134.2
Q ss_pred cHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHH
Q 038048 55 SPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRV---DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEE 131 (575)
Q Consensus 55 ~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~---~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~ 131 (575)
..+...+..++..+++++|+.+|++++...|.+ ..+++.+|.+|..+|++++|+..+...+...... ..
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~--------~~ 87 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQID--------PR 87 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------TT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC--------ch
Confidence 345566677888999999999999999999988 8899999999999999999999966655431100 00
Q ss_pred HHHHHhHHHHHHHH--------hch--------hhHHhhcCCcHHHH-----------------HHHHHHHHHcCCHHHH
Q 038048 132 GIAFAGVKTKMARS--------QGK--------KIQITVEQEKSRIL-----------------GNLAWAYMQQNNFEMA 178 (575)
Q Consensus 132 a~a~~~nla~al~s--------qg~--------k~aL~L~Pd~~~a~-----------------~nLG~aY~~qGryeEA 178 (575)
....+..++.++.. .|+ ..++...|++..+. +++|.+|..+|++++|
T Consensus 88 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 167 (261)
T 3qky_A 88 VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAA 167 (261)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHH
Confidence 01122233333333 222 23466677665444 8899999999999999
Q ss_pred HHHHHHHHHhCCCC---HH-HHHHHHHHHHc----------CCHHHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHHH
Q 038048 179 EQYYRKALSLGVDM---NK-QCNLAICLMHM----------NRVTEAKSLLQAVKISAGNRQMDTSYSRSFERAIQMLTE 244 (575)
Q Consensus 179 e~~yrkALeidPdn---~~-~~NLA~iy~~q----------Gr~eEAi~lLekALel~P~n~~~~~~l~slerA~elL~e 244 (575)
+.+|+++++.+|++ .. ++++|.+|..+ |++++|+.+|+++++..|++.........+......+.+
T Consensus 168 ~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 168 AVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp HHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHH
Confidence 99999999999985 34 88999999977 999999999999999999865322233333444444444
Q ss_pred hccc
Q 038048 245 LESP 248 (575)
Q Consensus 245 le~a 248 (575)
++..
T Consensus 248 ~~~~ 251 (261)
T 3qky_A 248 LEGD 251 (261)
T ss_dssp HHTC
T ss_pred hhhh
Confidence 4433
No 22
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.64 E-value=3.7e-15 Score=159.74 Aligned_cols=160 Identities=14% Similarity=0.018 Sum_probs=134.5
Q ss_pred cHHHHHHHHHHHcCCh-HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHH
Q 038048 55 SPYVRAKHIQLIDKDP-SRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGI 133 (575)
Q Consensus 55 ~~yarA~~l~l~~kd~-eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~ 133 (575)
..+...+..+...+++ ++|+.+|+++++++|.+..++++||.+|..+|++++|+.++..+++.... .
T Consensus 103 ~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------------~ 170 (474)
T 4abn_A 103 QALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN------------K 170 (474)
T ss_dssp HHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC------------H
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------------H
Confidence 3445566667778999 99999999999999999999999999999999999999997665543221 1
Q ss_pred HHHhHHHHHHHHh---------ch--------hhHHhhcCCcHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHh
Q 038048 134 AFAGVKTKMARSQ---------GK--------KIQITVEQEKSRILGNLAWAYMQQ--------NNFEMAEQYYRKALSL 188 (575)
Q Consensus 134 a~~~nla~al~sq---------g~--------k~aL~L~Pd~~~a~~nLG~aY~~q--------GryeEAe~~yrkALei 188 (575)
..+.+++.++... |+ +.++.++|++..++++||.+|..+ |++++|+.+|++|+++
T Consensus 171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 250 (474)
T 4abn_A 171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV 250 (474)
T ss_dssp HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh
Confidence 2233333333333 33 356888999999999999999999 9999999999999999
Q ss_pred CC---CCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 189 GV---DMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 189 dP---dn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
+| ++.. +++||.+|..+|++++|+.+|+++++++|++.
T Consensus 251 ~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 292 (474)
T 4abn_A 251 DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWP 292 (474)
T ss_dssp CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 99 8999 99999999999999999999999999999865
No 23
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.63 E-value=1.6e-15 Score=134.81 Aligned_cols=132 Identities=14% Similarity=0.108 Sum_probs=112.5
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhh
Q 038048 75 SLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITV 154 (575)
Q Consensus 75 ~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L 154 (575)
..|++++..+|....+++.+|.++...|++++|+.++.. ++.+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~-------------------------------------al~~ 47 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQA-------------------------------------LCML 47 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------------------------HHHH
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHH-------------------------------------HHHh
Confidence 567888899999999999999999999999999998533 3567
Q ss_pred cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCChhHHH
Q 038048 155 EQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMDTSYSR 233 (575)
Q Consensus 155 ~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~~~~~l~ 233 (575)
+|++..+++++|.+|..+|++++|+.+|++|+.++|+++. ++++|.+|..+|++++|+.+|++++++.|+++. +..
T Consensus 48 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~ 124 (142)
T 2xcb_A 48 DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPA---HEA 124 (142)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGG---GHH
T ss_pred CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc---hHH
Confidence 9999999999999999999999999999999999999999 999999999999999999999999999997652 233
Q ss_pred HHHHHHHHHHHhc
Q 038048 234 SFERAIQMLTELE 246 (575)
Q Consensus 234 slerA~elL~ele 246 (575)
...++..++..+.
T Consensus 125 ~~~~~~~~l~~l~ 137 (142)
T 2xcb_A 125 LAARAGAMLEAVT 137 (142)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4455666665544
No 24
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.63 E-value=1.2e-14 Score=136.48 Aligned_cols=136 Identities=13% Similarity=0.106 Sum_probs=106.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHH
Q 038048 57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFA 136 (575)
Q Consensus 57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~ 136 (575)
+...+..+...+++++|+.+|.+++..+ .+..+++.+|.+|...|++++|+.++...++.....
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~--------------- 71 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM--------------- 71 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---------------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc---------------
Confidence 4456677788999999999999999999 888999999999999999999999865543321110
Q ss_pred hHHHHHHHHhchhhHHhhcCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------------
Q 038048 137 GVKTKMARSQGKKIQITVEQEK---SRILGNLAWAYMQQNNFEMAEQYYRKALS-------------------------- 187 (575)
Q Consensus 137 ~nla~al~sqg~k~aL~L~Pd~---~~a~~nLG~aY~~qGryeEAe~~yrkALe-------------------------- 187 (575)
.++. ..+++++|.+|..+|++++|+.+|++++.
T Consensus 72 ------------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 133 (258)
T 3uq3_A 72 ------------------RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAY 133 (258)
T ss_dssp ------------------TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHH
Confidence 0011 34556666666666666666666666666
Q ss_pred hCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 188 LGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 188 idPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
++|++.. ++++|.+|..+|++++|+.+|++++...|.+.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 173 (258)
T 3uq3_A 134 VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA 173 (258)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccH
Confidence 7777777 99999999999999999999999999999764
No 25
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.63 E-value=4.7e-14 Score=138.12 Aligned_cols=175 Identities=11% Similarity=0.026 Sum_probs=119.7
Q ss_pred CCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHH---HHHHHHHH
Q 038048 51 PSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEI---ELLQNKLK 127 (575)
Q Consensus 51 ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi---~lL~~~L~ 127 (575)
|.....+...+..+...+++++|+.+|++++..+|....+++.+|.+|...|++++|+..+...++... ........
T Consensus 34 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 113 (359)
T 3ieg_A 34 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQ 113 (359)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHH
Confidence 333344444555556666666666666666666666666666666666666666666666444332111 00000000
Q ss_pred --hhHHHHHHHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HH
Q 038048 128 --NIEEGIAFAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QC 196 (575)
Q Consensus 128 --l~~~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~ 196 (575)
.+. ........+..+...|+ ..++...|++..++.++|.+|..+|++++|+.+|+++++++|++.. ++
T Consensus 114 l~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 192 (359)
T 3ieg_A 114 LVKAD-EMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFY 192 (359)
T ss_dssp HHHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 000 00011122344444444 3457779999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 197 NLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 197 NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
++|.+|..+|++++|+.+|+++++..|++.
T Consensus 193 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 222 (359)
T 3ieg_A 193 KISTLYYQLGDHELSLSEVRECLKLDQDHK 222 (359)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCccch
Confidence 999999999999999999999999998764
No 26
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.63 E-value=1e-14 Score=145.22 Aligned_cols=170 Identities=16% Similarity=0.114 Sum_probs=118.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcC----------------------
Q 038048 57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGR---------------------- 114 (575)
Q Consensus 57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~ga---------------------- 114 (575)
+...+..+...+++++|+.+|++++..+|.+..+++.+|.+|..+|++++|+..+...
T Consensus 101 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (368)
T 1fch_A 101 WQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAG 180 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC----------
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhc
Confidence 3334444455555555555555555555555555555566666666655555553221
Q ss_pred ----------------HHHHHHHHHHHHHhhHH--HHHHHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHH
Q 038048 115 ----------------IEEEIELLQNKLKNIEE--GIAFAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWA 168 (575)
Q Consensus 115 ----------------LeeAi~lL~~~L~l~~~--a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~a 168 (575)
+++++..+...+...+. ....+..++.++...|+ ..++.++|++..+++++|.+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~ 260 (368)
T 1fch_A 181 LGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGAT 260 (368)
T ss_dssp -----CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 22333334444333333 34455667777777666 34577789999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 169 YMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 169 Y~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
|..+|++++|+.+|+++++++|++.. +++||.+|..+|++++|+.+|++++.+.|++.
T Consensus 261 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 319 (368)
T 1fch_A 261 LANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSR 319 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999998 99999999999999999999999999988763
No 27
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.63 E-value=1.9e-14 Score=127.53 Aligned_cols=158 Identities=15% Similarity=0.053 Sum_probs=121.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHh
Q 038048 58 VRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAG 137 (575)
Q Consensus 58 arA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~ 137 (575)
...+..+...+++++|+.+|++++..+|....+++.+|.+|...|++++|+.++...++.. +.....+.
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----------~~~~~~~~ 80 (186)
T 3as5_A 12 RDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-----------PDNVKVAT 80 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------TTCHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------CCCHHHHH
Confidence 3445666788999999999999999999999999999999999999999998865544321 11112223
Q ss_pred HHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCH
Q 038048 138 VKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRV 208 (575)
Q Consensus 138 nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~ 208 (575)
.++..+...|+ ..++.+.|.+..++..+|.+|..+|++++|+.+|++++++.|++.. +.++|.+|..+|++
T Consensus 81 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 160 (186)
T 3as5_A 81 VLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRH 160 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCH
Confidence 33333333333 2346667888888888899999999999999999999998888888 88889999999999
Q ss_pred HHHHHHHHHHHHHcCCCC
Q 038048 209 TEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 209 eEAi~lLekALel~P~n~ 226 (575)
++|+.+++++++..|++.
T Consensus 161 ~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 161 EEALPHFKKANELDEGAS 178 (186)
T ss_dssp HHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHcCCCch
Confidence 999999999888888654
No 28
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.62 E-value=4.2e-14 Score=133.88 Aligned_cols=159 Identities=16% Similarity=0.151 Sum_probs=128.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHH
Q 038048 57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFA 136 (575)
Q Consensus 57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~ 136 (575)
+...+..+...+++++|+.+|++++..+|....+++.+|.+|...|++++|+.++...++... .....+
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-----------~~~~~~ 108 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-----------RNARVL 108 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------TCHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-----------CcHHHH
Confidence 344556678889999999999999999999999999999999999999999998665544311 112233
Q ss_pred hHHHHHHHHhch--------hhHHh--hcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHc
Q 038048 137 GVKTKMARSQGK--------KIQIT--VEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHM 205 (575)
Q Consensus 137 ~nla~al~sqg~--------k~aL~--L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~q 205 (575)
..++.++...|+ ..++. ..|....+++++|.+|..+|++++|+.+|++++++.|++.. +++||.+|..+
T Consensus 109 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 188 (252)
T 2ho1_A 109 NNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKE 188 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc
Confidence 344444444444 22344 56788889999999999999999999999999999999998 99999999999
Q ss_pred CCHHHHHHHHHHHHHHcCCCC
Q 038048 206 NRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 206 Gr~eEAi~lLekALel~P~n~ 226 (575)
|++++|+.+|+++++..|.+.
T Consensus 189 g~~~~A~~~~~~~~~~~~~~~ 209 (252)
T 2ho1_A 189 REYVPARQYYDLFAQGGGQNA 209 (252)
T ss_dssp TCHHHHHHHHHHHHTTSCCCH
T ss_pred CCHHHHHHHHHHHHHhCcCcH
Confidence 999999999999999888654
No 29
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.62 E-value=1.1e-13 Score=135.61 Aligned_cols=180 Identities=13% Similarity=0.043 Sum_probs=123.1
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHH-----------------------hcCHHHH
Q 038048 62 HIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEAR-----------------------SGRIEEE 118 (575)
Q Consensus 62 ~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~-----------------------~gaLeeA 118 (575)
......+++++|+.+|.+++..+|....++..+|.+|...|++++|+..+ .+.++++
T Consensus 128 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 207 (359)
T 3ieg_A 128 LDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELS 207 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 44566677777777777777777777777777777777777777777662 3333444
Q ss_pred HHHHHHHHHhhHHHHHH------------HhHHHHHHHHhch--------hhHHhhcCCcHH----HHHHHHHHHHHcCC
Q 038048 119 IELLQNKLKNIEEGIAF------------AGVKTKMARSQGK--------KIQITVEQEKSR----ILGNLAWAYMQQNN 174 (575)
Q Consensus 119 i~lL~~~L~l~~~a~a~------------~~nla~al~sqg~--------k~aL~L~Pd~~~----a~~nLG~aY~~qGr 174 (575)
+..+...+...+..... ....+..+...|+ ..++.+.|++.. ++..+|.+|..+|+
T Consensus 208 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 287 (359)
T 3ieg_A 208 LSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEK 287 (359)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccC
Confidence 44444444322211111 1122444444444 335666777663 56778999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHHH
Q 038048 175 FEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMDTSYSRSFERAIQMLTE 244 (575)
Q Consensus 175 yeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~~~~~l~slerA~elL~e 244 (575)
+++|+.+|+++++++|++.. ++++|.+|..+|++++|+.+|+++++++|++. .....+.++...+.+
T Consensus 288 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 288 PVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQ---QIREGLEKAQRLLKQ 355 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh---HHHHHHHHHHHHHHH
Confidence 99999999999999999988 88999999999999999999999999988754 233455555555544
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.62 E-value=5.8e-14 Score=136.37 Aligned_cols=174 Identities=13% Similarity=0.109 Sum_probs=100.3
Q ss_pred CCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCH---------------
Q 038048 51 PSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRI--------------- 115 (575)
Q Consensus 51 ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaL--------------- 115 (575)
|.....+...+..+...+++++|+.+|++++..+|....++..+|.+|...|++++|+..+...+
T Consensus 52 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 131 (327)
T 3cv0_A 52 PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQ 131 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC------
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhH
Confidence 33333444455566667777777777777777777777777777777777777777777643322
Q ss_pred -----------------------HHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch--------hhHHhhcCCcHHHHHH
Q 038048 116 -----------------------EEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK--------KIQITVEQEKSRILGN 164 (575)
Q Consensus 116 -----------------------eeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~n 164 (575)
++++..+...+...+.....+..++.++...|+ ..++.++|++..++.+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 211 (327)
T 3cv0_A 132 ADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNK 211 (327)
T ss_dssp --------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 222233333332222222333444444444444 2234445555556666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 038048 165 LAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGN 224 (575)
Q Consensus 165 LG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~ 224 (575)
+|.+|..+|++++|+.+|+++++++|++.. +.++|.+|..+|++++|+.+|++++...|+
T Consensus 212 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 212 LGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 666666666666666666666666666555 556666666666666666666666665554
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.61 E-value=1e-13 Score=139.26 Aligned_cols=162 Identities=16% Similarity=0.099 Sum_probs=126.1
Q ss_pred HHcCChHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHH------------------HhcCHHHHHHHHHH
Q 038048 65 LIDKDPSRAVSLFWAAINA--GDRVDSALKDMAVVMKQLDRSDEAIEA------------------RSGRIEEEIELLQN 124 (575)
Q Consensus 65 l~~kd~eeAi~lf~kAL~l--~p~~~~Al~nLA~iy~qqGrydEAie~------------------~~gaLeeAi~lL~~ 124 (575)
...++.++|+..|++.+.. +|++..+++.+|.+|...|++++|+.+ ..+.+++++..+..
T Consensus 76 ~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 76 ASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTTCCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3456789999999998876 588888999999999999999999987 34556666666666
Q ss_pred HHHhhHHHHHH--HhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048 125 KLKNIEEGIAF--AGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK 194 (575)
Q Consensus 125 ~L~l~~~a~a~--~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~ 194 (575)
.+...+..... ...+...+...|+ ..++...|++..+++++|.+|..+|++++|+.+|++||+++|+++.
T Consensus 156 ~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~ 235 (291)
T 3mkr_A 156 MQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPE 235 (291)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 66433222111 0011111112222 3457779999999999999999999999999999999999999999
Q ss_pred -HHHHHHHHHHcCCHHH-HHHHHHHHHHHcCCCC
Q 038048 195 -QCNLAICLMHMNRVTE-AKSLLQAVKISAGNRQ 226 (575)
Q Consensus 195 -~~NLA~iy~~qGr~eE-Ai~lLekALel~P~n~ 226 (575)
++|||.++..+|++++ |..+++++++++|+++
T Consensus 236 ~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~ 269 (291)
T 3mkr_A 236 TLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHP 269 (291)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCh
Confidence 9999999999999987 5789999999999876
No 32
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.60 E-value=9.7e-15 Score=132.78 Aligned_cols=141 Identities=16% Similarity=0.107 Sum_probs=119.6
Q ss_pred HcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHH
Q 038048 66 IDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARS 145 (575)
Q Consensus 66 ~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~s 145 (575)
..+++++|+.+|++++..+|.+..+++.+|.+|...|++++|+.++..
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~-------------------------------- 69 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQ-------------------------------- 69 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHH--------------------------------
T ss_pred hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH--------------------------------
Confidence 457889999999999999999999999999999999999999998543
Q ss_pred hchhhHHhhcCCcHHHHHHHHHH-HHHcCCH--HHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038048 146 QGKKIQITVEQEKSRILGNLAWA-YMQQNNF--EMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKIS 221 (575)
Q Consensus 146 qg~k~aL~L~Pd~~~a~~nLG~a-Y~~qGry--eEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel 221 (575)
++.++|++..+++++|.+ |...|++ ++|+.+|+++++++|++.. ++++|.+|..+|++++|+.+|++++++
T Consensus 70 -----al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 70 -----ALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp -----HHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred -----HHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 245678889999999999 8899999 9999999999999999999 999999999999999999999999999
Q ss_pred cCCCCCChhHHHHHHHHHHHHH
Q 038048 222 AGNRQMDTSYSRSFERAIQMLT 243 (575)
Q Consensus 222 ~P~n~~~~~~l~slerA~elL~ 243 (575)
+|++.........+.++.++..
T Consensus 145 ~p~~~~~~~~~~~i~~~~~~~~ 166 (177)
T 2e2e_A 145 NSPRINRTQLVESINMAKLLQR 166 (177)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHhcC
Confidence 9987632233445555555544
No 33
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.59 E-value=2e-13 Score=125.38 Aligned_cols=159 Identities=13% Similarity=0.072 Sum_probs=130.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHH
Q 038048 57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFA 136 (575)
Q Consensus 57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~ 136 (575)
+...+..+...+++++|+.+|++++..+|....+++.+|.+|...|++++|+.++...++.. +.....+
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----------~~~~~~~ 79 (225)
T 2vq2_A 11 KTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-----------PDSAEIN 79 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------TTCHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-----------CCChHHH
Confidence 44556677889999999999999999999999999999999999999999999866554321 1112233
Q ss_pred hHHHHHHHHh-ch--------hhHHh--hcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH
Q 038048 137 GVKTKMARSQ-GK--------KIQIT--VEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMH 204 (575)
Q Consensus 137 ~nla~al~sq-g~--------k~aL~--L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~ 204 (575)
..++..+... |+ ..++. ..|....+++++|.+|..+|++++|+.+|++++++.|++.. +.++|.+|..
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 159 (225)
T 2vq2_A 80 NNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKML 159 (225)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 4444555555 44 23344 45677889999999999999999999999999999999999 9999999999
Q ss_pred cCCHHHHHHHHHHHHHHcC-CCC
Q 038048 205 MNRVTEAKSLLQAVKISAG-NRQ 226 (575)
Q Consensus 205 qGr~eEAi~lLekALel~P-~n~ 226 (575)
+|++++|+.+|++++...| .+.
T Consensus 160 ~~~~~~A~~~~~~~~~~~~~~~~ 182 (225)
T 2vq2_A 160 AGQLGDADYYFKKYQSRVEVLQA 182 (225)
T ss_dssp HTCHHHHHHHHHHHHHHHCSCCH
T ss_pred cCCHHHHHHHHHHHHHhCCCCCH
Confidence 9999999999999999998 653
No 34
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.58 E-value=2.4e-14 Score=136.78 Aligned_cols=161 Identities=14% Similarity=0.095 Sum_probs=79.0
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHH-------------------------
Q 038048 62 HIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIE------------------------- 116 (575)
Q Consensus 62 ~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLe------------------------- 116 (575)
..++..+++++|+.+|+++++.+|.+..+++.+|.+|...|++++|+.++...++
T Consensus 11 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~ 90 (272)
T 3u4t_A 11 DFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQD 90 (272)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccH
Confidence 4445556666666666666666666555666666666666666666655332221
Q ss_pred -HHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038048 117 -EEIELLQNKLKNIEEGIAFAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALS 187 (575)
Q Consensus 117 -eAi~lL~~~L~l~~~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALe 187 (575)
+++..+...+...+.....+..++.++...|+ ..++.++|.+..+++++|......+++++|+.+|+++++
T Consensus 91 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 170 (272)
T 3u4t_A 91 SLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLE 170 (272)
T ss_dssp HHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111111111111223333344433333 223444555555555555222333355555555555555
Q ss_pred hCCCCHH-HHHHHHHHHHcCC---HHHHHHHHHHHHHHc
Q 038048 188 LGVDMNK-QCNLAICLMHMNR---VTEAKSLLQAVKISA 222 (575)
Q Consensus 188 idPdn~~-~~NLA~iy~~qGr---~eEAi~lLekALel~ 222 (575)
++|++.. ++++|.++..+|+ +++|+..|+++++..
T Consensus 171 ~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 209 (272)
T 3u4t_A 171 LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVC 209 (272)
T ss_dssp HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHH
T ss_pred hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHH
Confidence 5555555 5555555555555 555555555555554
No 35
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.58 E-value=4.5e-14 Score=144.77 Aligned_cols=170 Identities=14% Similarity=0.079 Sum_probs=118.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHH-----------------------hc
Q 038048 57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEAR-----------------------SG 113 (575)
Q Consensus 57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~-----------------------~g 113 (575)
+...+..+...+++++|+.+|++++..+|.+..+++.+|.+|...|++++|+.++ .+
T Consensus 29 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 108 (450)
T 2y4t_A 29 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQG 108 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 3334445555666666666666666666666666666666666666666666652 22
Q ss_pred CHHHHHHHHHHHHHhhHHHH---HH------------HhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHH
Q 038048 114 RIEEEIELLQNKLKNIEEGI---AF------------AGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYM 170 (575)
Q Consensus 114 aLeeAi~lL~~~L~l~~~a~---a~------------~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~ 170 (575)
.+++++..+...+...+... .. ....+..+...|+ ..++.+.|.+..+++++|.+|.
T Consensus 109 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 188 (450)
T 2y4t_A 109 KLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFI 188 (450)
T ss_dssp CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 33333334443332211111 11 1122333444444 3456778999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 171 QQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 171 ~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
..|++++|+.+|+++++++|++.. ++++|.+|...|++++|+.+|++++.+.|++.
T Consensus 189 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 245 (450)
T 2y4t_A 189 KEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHK 245 (450)
T ss_dssp HTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChH
Confidence 999999999999999999999999 99999999999999999999999999998764
No 36
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.58 E-value=1e-13 Score=115.93 Aligned_cols=131 Identities=21% Similarity=0.222 Sum_probs=117.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHH
Q 038048 57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFA 136 (575)
Q Consensus 57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~ 136 (575)
+...+..+...+++++|+.+|++++..+|....+++.+|.++...|++++|+.++...
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~---------------------- 61 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA---------------------- 61 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH----------------------
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHH----------------------
Confidence 3445566778899999999999999999999999999999999999999999884332
Q ss_pred hHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHH
Q 038048 137 GVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLL 215 (575)
Q Consensus 137 ~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lL 215 (575)
+.+.|....+++++|.+|..+|++++|+.+|++++.+.|++.. ++++|.+|..+|++++|+.+|
T Consensus 62 ---------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 126 (136)
T 2fo7_A 62 ---------------LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 126 (136)
T ss_dssp ---------------HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred ---------------HHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHH
Confidence 3446777889999999999999999999999999999999998 999999999999999999999
Q ss_pred HHHHHHcCC
Q 038048 216 QAVKISAGN 224 (575)
Q Consensus 216 ekALel~P~ 224 (575)
++++..+|+
T Consensus 127 ~~~~~~~~~ 135 (136)
T 2fo7_A 127 QKALELDPR 135 (136)
T ss_dssp HHHHHHSTT
T ss_pred HHHHccCCC
Confidence 999999875
No 37
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.58 E-value=2.6e-14 Score=131.26 Aligned_cols=162 Identities=10% Similarity=0.030 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHH-HHHHHHHHhhHHHHH
Q 038048 56 PYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEI-ELLQNKLKNIEEGIA 134 (575)
Q Consensus 56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi-~lL~~~L~l~~~a~a 134 (575)
.+...+..++..|++++|+..|++++..+|++..+++++|.+|..+|++++|+.++...+.... ..+......+.....
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhh
Confidence 3445556778899999999999999999999999999999999999999999999877765421 000000000000000
Q ss_pred HHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HH-HHHHHHHHHHcCCHHHH
Q 038048 135 FAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDM--NK-QCNLAICLMHMNRVTEA 211 (575)
Q Consensus 135 ~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn--~~-~~NLA~iy~~qGr~eEA 211 (575)
.....+.... +.++.++|++..+++++|.+|..+|++++|+.+|+++++++|++ .. +.+||.+|..+|+.++|
T Consensus 88 --~~~~~a~~~~--~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 88 --AAESPELKRL--EQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp --HTSCHHHHHH--HHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred --cccchHHHHH--HHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 0000000000 34678899999999999999999999999999999999999986 44 88999999999999999
Q ss_pred HHHHHHHHHH
Q 038048 212 KSLLQAVKIS 221 (575)
Q Consensus 212 i~lLekALel 221 (575)
+..|+++|..
T Consensus 164 ~~~y~~al~~ 173 (176)
T 2r5s_A 164 ASKYRRQLYS 173 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999863
No 38
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.58 E-value=3.1e-14 Score=125.77 Aligned_cols=110 Identities=13% Similarity=0.114 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHH
Q 038048 56 PYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAF 135 (575)
Q Consensus 56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~ 135 (575)
.+...|..++..|++++|+.+|.++|+.+|.+..+++++|.+|..+|++++|+..+..
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~---------------------- 72 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDT---------------------- 72 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH----------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHH----------------------
Confidence 3445677888999999999999999999999999999999999999999999998533
Q ss_pred HhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHH
Q 038048 136 AGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICL 202 (575)
Q Consensus 136 ~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy 202 (575)
++.++|++..+|+++|.+|..+|++++|+.+|+++|+++|++.. +.+|+.++
T Consensus 73 ---------------al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 73 ---------------CIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp ---------------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred ---------------HHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 35679999999999999999999999999999999999999999 88998875
No 39
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.58 E-value=1.7e-14 Score=164.10 Aligned_cols=133 Identities=17% Similarity=0.163 Sum_probs=116.1
Q ss_pred cCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch--------hhHHhh
Q 038048 83 AGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK--------KIQITV 154 (575)
Q Consensus 83 l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~--------k~aL~L 154 (575)
..|+++.++++||.+|.++|++++|++++.++++. .+.....+.+++.++...|+ +.++.+
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l-----------~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l 72 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV-----------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 72 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35788899999999999999999999997666543 23333456667777777766 457899
Q ss_pred cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 155 EQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 155 ~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
+|++..+|++||.+|..+|++++|+.+|++||+++|++.. ++|||.+|..+|++++|+.+|+++++++|++.
T Consensus 73 ~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~ 145 (723)
T 4gyw_A 73 SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFP 145 (723)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence 9999999999999999999999999999999999999999 99999999999999999999999999999875
No 40
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.57 E-value=1.7e-13 Score=146.05 Aligned_cols=186 Identities=14% Similarity=0.041 Sum_probs=104.7
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHH
Q 038048 62 HIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTK 141 (575)
Q Consensus 62 ~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~ 141 (575)
..+...|++++|+.+|+++++.+|.+..+++.||.+|.+.|++++|+++ +...+...+.....+..++.
T Consensus 381 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-----------~~~~~~~~~~~~~~~~~l~~ 449 (597)
T 2xpi_A 381 IYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISA-----------YTTAARLFQGTHLPYLFLGM 449 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH-----------HHHHHHTTTTCSHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH-----------HHHHHHhCccchHHHHHHHH
Confidence 3334444444444444444444444444444444444444444444444 33333222222233444555
Q ss_pred HHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCC-HH-HHHHHHHHHHc
Q 038048 142 MARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSL------GVDM-NK-QCNLAICLMHM 205 (575)
Q Consensus 142 al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALei------dPdn-~~-~~NLA~iy~~q 205 (575)
++...|+ ..++.+.|.+..+++.+|.+|...|++++|+.+|++++++ +|++ .. +.+||.+|...
T Consensus 450 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 529 (597)
T 2xpi_A 450 QHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL 529 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHh
Confidence 5554444 2345667777778888888888888888888888888877 5654 44 77788888888
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCChh----HHHHHHHHHHHHHHhccccccCcccccc
Q 038048 206 NRVTEAKSLLQAVKISAGNRQMDTS----YSRSFERAIQMLTELESPSVLKLTELEV 258 (575)
Q Consensus 206 Gr~eEAi~lLekALel~P~n~~~~~----~l~slerA~elL~ele~al~~~p~~~e~ 258 (575)
|++++|+.+|+++++..|++..... .....++..+++..++..+.+.|.....
T Consensus 530 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 586 (597)
T 2xpi_A 530 KMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMA 586 (597)
T ss_dssp TCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHH
Confidence 8888888888888887776542110 1112233344444445555555655533
No 41
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.57 E-value=2.8e-13 Score=138.83 Aligned_cols=166 Identities=11% Similarity=0.000 Sum_probs=111.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhc-----------------------CHHH
Q 038048 61 KHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSG-----------------------RIEE 117 (575)
Q Consensus 61 ~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~g-----------------------aLee 117 (575)
+..+...+++++|+.+|++++...|....+++.+|.+|...|++++|+.++.. .+++
T Consensus 150 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 229 (450)
T 2y4t_A 150 ALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHEL 229 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 34456677888888888888888888888888888888888888888877333 3333
Q ss_pred HHHHHHHHHHhhHHHHHHH------------hHHHHHHHHhch--------hhHHhhcCCcH----HHHHHHHHHHHHcC
Q 038048 118 EIELLQNKLKNIEEGIAFA------------GVKTKMARSQGK--------KIQITVEQEKS----RILGNLAWAYMQQN 173 (575)
Q Consensus 118 Ai~lL~~~L~l~~~a~a~~------------~nla~al~sqg~--------k~aL~L~Pd~~----~a~~nLG~aY~~qG 173 (575)
++..+...+...+.....+ ..++.++...|+ ..++.+.|++. .++.++|.+|..+|
T Consensus 230 A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g 309 (450)
T 2y4t_A 230 SLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDE 309 (450)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCC
Confidence 3333333332221111111 112444444444 23456667663 36777888888888
Q ss_pred CHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 174 NFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 174 ryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
++++|+.+|+++++++|++.. ++++|.+|..+|++++|+.+|+++++++|++.
T Consensus 310 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 363 (450)
T 2y4t_A 310 KPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQ 363 (450)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCH
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchH
Confidence 888888888888888888877 78888888888888888888888888777653
No 42
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.56 E-value=1.2e-13 Score=134.21 Aligned_cols=170 Identities=16% Similarity=0.118 Sum_probs=130.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHH--------------------
Q 038048 57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIE-------------------- 116 (575)
Q Consensus 57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLe-------------------- 116 (575)
+...+..+...+++++|+.+|++++..+|....+++.+|.+|...|++++|+.++...++
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~ 103 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 103 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcC
Confidence 445556778899999999999999999999999999999999999999999998444333
Q ss_pred ---HHHHHHHHHHHhhHHHHHHHhHH--------------HH-HHHHhch--------hhHHhhcCCcHHHHHHHHHHHH
Q 038048 117 ---EEIELLQNKLKNIEEGIAFAGVK--------------TK-MARSQGK--------KIQITVEQEKSRILGNLAWAYM 170 (575)
Q Consensus 117 ---eAi~lL~~~L~l~~~a~a~~~nl--------------a~-al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~ 170 (575)
+++..+...+...+.....+..+ +. ++...|+ ..++.+.|.+..++..+|.+|.
T Consensus 104 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 183 (327)
T 3cv0_A 104 NANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYN 183 (327)
T ss_dssp CHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 33333333332111100000000 11 1111111 3456778999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 171 QQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 171 ~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
.+|++++|+.+|+++++++|++.. +.++|.+|..+|++++|+.+|+++++..|++.
T Consensus 184 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 240 (327)
T 3cv0_A 184 LSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYV 240 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence 999999999999999999999999 99999999999999999999999999998754
No 43
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.56 E-value=8e-14 Score=139.15 Aligned_cols=161 Identities=14% Similarity=0.086 Sum_probs=125.9
Q ss_pred CCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhh
Q 038048 50 VPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNI 129 (575)
Q Consensus 50 ~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~ 129 (575)
.|.....+...+..++..|++++|+..|++++..+|++..++++||.+|.++|++++|+.++...+..........+
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~--- 189 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGL--- 189 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHH---
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHH---
Confidence 35545556667777889999999999999999999999999999999999999999999998776553221110000
Q ss_pred HHHHHHHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HH-HHHH
Q 038048 130 EEGIAFAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDM--NK-QCNL 198 (575)
Q Consensus 130 ~~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn--~~-~~NL 198 (575)
.....+...+. +.++.++|++..++++||.+|..+|++++|+..|+++++++|++ .. +.+|
T Consensus 190 --------~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l 261 (287)
T 3qou_A 190 --------VAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTF 261 (287)
T ss_dssp --------HHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHH
T ss_pred --------HHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHH
Confidence 00000101010 24577899999999999999999999999999999999999988 56 8899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Q 038048 199 AICLMHMNRVTEAKSLLQAVKIS 221 (575)
Q Consensus 199 A~iy~~qGr~eEAi~lLekALel 221 (575)
|.+|..+|+.++|+..|++++..
T Consensus 262 ~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 262 QEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCcHHHHHHHHHHH
Confidence 99999999999999999988763
No 44
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.55 E-value=5.5e-14 Score=148.16 Aligned_cols=202 Identities=8% Similarity=-0.034 Sum_probs=152.5
Q ss_pred hcCCCCCcHHHHHHHHHHHcCC-hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHH
Q 038048 48 HKVPSGDSPYVRAKHIQLIDKD-PSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKL 126 (575)
Q Consensus 48 ~~~ps~d~~yarA~~l~l~~kd-~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L 126 (575)
...|.....+...+.++...++ +++|+.+|+++|.++|++..+++++|.+|..+|++++|+..+.++++
T Consensus 125 ~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~---------- 194 (382)
T 2h6f_A 125 ELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILN---------- 194 (382)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH----------
T ss_pred HhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH----------
Confidence 3445555556666677777785 99999999999999999999999999999999999999998666544
Q ss_pred HhhHHHHHHHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHHhCCCC
Q 038048 127 KNIEEGIAFAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQ-QNNFEMA-----EQYYRKALSLGVDM 192 (575)
Q Consensus 127 ~l~~~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~-qGryeEA-----e~~yrkALeidPdn 192 (575)
+.+.....+.+++.++...|+ ..++.++|++..+|+++|.+|.. .|.+++| +.+|++||+++|++
T Consensus 195 -ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~ 273 (382)
T 2h6f_A 195 -QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHN 273 (382)
T ss_dssp -HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTC
T ss_pred -hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCC
Confidence 333334455666666666665 46789999999999999999999 5665888 59999999999999
Q ss_pred HH-HHHHHHHHHHcC--CHHHHHHHHHHHHHHcCCCCCCh-----hHHHHH-------H-HHHHHHHHhccc-cccCccc
Q 038048 193 NK-QCNLAICLMHMN--RVTEAKSLLQAVKISAGNRQMDT-----SYSRSF-------E-RAIQMLTELESP-SVLKLTE 255 (575)
Q Consensus 193 ~~-~~NLA~iy~~qG--r~eEAi~lLekALel~P~n~~~~-----~~l~sl-------e-rA~elL~ele~a-l~~~p~~ 255 (575)
.. +++||.+|..+| ++++|+..++++ +.+|++.... .+.... + ...+++..++.+ ..++|..
T Consensus 274 ~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r 352 (382)
T 2h6f_A 274 ESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIR 352 (382)
T ss_dssp HHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchh
Confidence 99 999999999999 799999999987 7666653211 111110 1 124444445555 5667776
Q ss_pred ccccch
Q 038048 256 LEVGDD 261 (575)
Q Consensus 256 ~e~~~~ 261 (575)
...|..
T Consensus 353 ~~~w~~ 358 (382)
T 2h6f_A 353 KEYWRY 358 (382)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666555
No 45
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.54 E-value=2.9e-13 Score=144.22 Aligned_cols=170 Identities=8% Similarity=-0.050 Sum_probs=132.1
Q ss_pred CcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHH-----------------------
Q 038048 54 DSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEA----------------------- 110 (575)
Q Consensus 54 d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~----------------------- 110 (575)
...+...+..+...|++++|+.+|++++..+|.+..++..++.+|.+.|++++|+.+
T Consensus 305 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 384 (597)
T 2xpi_A 305 SDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYL 384 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Confidence 334444556667778888888888888887777767777777777777777777766
Q ss_pred HhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 038048 111 RSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYY 182 (575)
Q Consensus 111 ~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~y 182 (575)
..+.+++++..+...+...+.....+..++..+...|+ +.++.+.|++..+++.+|.+|...|++++|+.+|
T Consensus 385 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 464 (597)
T 2xpi_A 385 CVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYL 464 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 23444455555555554333444456666777766666 3456778999999999999999999999999999
Q ss_pred HHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Q 038048 183 RKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAG 223 (575)
Q Consensus 183 rkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P 223 (575)
++++++.|++.. +.++|.+|...|++++|+.+|+++++..|
T Consensus 465 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 506 (597)
T 2xpi_A 465 QSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVK 506 (597)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhh
Confidence 999999999999 99999999999999999999999999854
No 46
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.53 E-value=1.2e-13 Score=128.04 Aligned_cols=130 Identities=15% Similarity=0.085 Sum_probs=115.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHH
Q 038048 57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFA 136 (575)
Q Consensus 57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~ 136 (575)
+...+..+...+++++|+.+|++++ ++ ...+++++|.+|..+|++++|+.++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~----------------------- 62 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTR----------------------- 62 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHH-----------------------
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHH-----------------------
Confidence 4455667788999999999999996 33 578999999999999999999998543
Q ss_pred hHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------H-HHHHH
Q 038048 137 GVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMN----------------K-QCNLA 199 (575)
Q Consensus 137 ~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~----------------~-~~NLA 199 (575)
++.++|++..+++++|.+|..+|++++|+.+|++++++.|++. . ++++|
T Consensus 63 --------------al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 128 (213)
T 1hh8_A 63 --------------SINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIA 128 (213)
T ss_dssp --------------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHH
T ss_pred --------------HHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHH
Confidence 2456888999999999999999999999999999999998876 7 89999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 200 ICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 200 ~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
.+|..+|++++|+.+|++++++.|++.
T Consensus 129 ~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 129 FMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred HHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 999999999999999999999998653
No 47
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.53 E-value=2.5e-13 Score=122.70 Aligned_cols=124 Identities=18% Similarity=0.157 Sum_probs=105.3
Q ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHH
Q 038048 85 DRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGN 164 (575)
Q Consensus 85 p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~n 164 (575)
+....+++.+|.+|...|+|++|+.++.. ++.++|++..++++
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~-------------------------------------al~~~p~~~~~~~~ 50 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQ-------------------------------------ALSIAPANPIYLSN 50 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------------------------HHHHSTTCHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHH-------------------------------------HHHhCCcCHHHHHH
Confidence 33466889999999999999999998544 35668999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHH
Q 038048 165 LAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMDTSYSRSFERAIQMLT 243 (575)
Q Consensus 165 LG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~~~~~l~slerA~elL~ 243 (575)
+|.+|..+|+|++|+.+|+++++++|++.. +++||.+|..+|++++|+.+|+++++++|++.. ......+..+...+.
T Consensus 51 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~~~l~~~~~~~~ 129 (164)
T 3sz7_A 51 RAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGS-DAMKRGLETTKRKIE 129 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 999999999999999999999999999998762 223344555555555
Q ss_pred Hhc
Q 038048 244 ELE 246 (575)
Q Consensus 244 ele 246 (575)
+..
T Consensus 130 ~~~ 132 (164)
T 3sz7_A 130 EAN 132 (164)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 48
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.52 E-value=3.2e-13 Score=141.34 Aligned_cols=63 Identities=14% Similarity=0.066 Sum_probs=53.6
Q ss_pred cCCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Q 038048 49 KVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEAR 111 (575)
Q Consensus 49 ~~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~ 111 (575)
..|.....+...+..+...+++++|+..|++++..+|++..+++.+|.+|..+|++++|+..+
T Consensus 54 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 116 (537)
T 3fp2_A 54 LDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDL 116 (537)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 444555566667777888899999999999999999999999999999999999999998764
No 49
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.52 E-value=6.7e-13 Score=126.25 Aligned_cols=159 Identities=11% Similarity=-0.030 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHH
Q 038048 56 PYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAF 135 (575)
Q Consensus 56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~ 135 (575)
.+...+..+...+++++|+.+|++++..+|.+..+++++|.+|...|++++|+.++..+++.. +.....
T Consensus 45 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----------~~~~~~ 113 (275)
T 1xnf_A 45 LLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-----------PTYNYA 113 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------TTCTHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-----------ccccHH
Confidence 344566777889999999999999999999999999999999999999999999865544321 111122
Q ss_pred HhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------
Q 038048 136 AGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDM--------------- 192 (575)
Q Consensus 136 ~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn--------------- 192 (575)
+..++.++...|+ ..++.+.|++...+..++.. ..+|++++|+.+|++++...|++
T Consensus 114 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (275)
T 1xnf_A 114 HLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNIS 192 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcC
Confidence 3333444444433 23455666666544444433 44566666666666666655543
Q ss_pred ----------------------HH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 193 ----------------------NK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 193 ----------------------~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
.. +++||.+|..+|++++|+.+|++++.++|++.
T Consensus 193 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 249 (275)
T 1xnf_A 193 EQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 249 (275)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred HHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH
Confidence 23 56777777778888888888888777777654
No 50
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.52 E-value=2.1e-13 Score=124.08 Aligned_cols=159 Identities=10% Similarity=-0.032 Sum_probs=124.0
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch--------hhHHhhcCCc
Q 038048 87 VDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK--------KIQITVEQEK 158 (575)
Q Consensus 87 ~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~--------k~aL~L~Pd~ 158 (575)
...+|++||.+|..+|++++|+.++..+++. .+.....+..++.++...|+ ..++...|+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~-----------~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~ 72 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA-----------DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS 72 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh
Confidence 4678999999999999999999997766543 22333444555556655555 3457779999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCCh----hHHH
Q 038048 159 SRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMDT----SYSR 233 (575)
Q Consensus 159 ~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~~~----~~l~ 233 (575)
..++.++|.++...+++++|+..+.+++.++|++.. +..+|.+|..+|++++|+.+|+++++++|.+.... ....
T Consensus 73 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~ 152 (184)
T 3vtx_A 73 AEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYE 152 (184)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999 99999999999999999999999999999875311 1112
Q ss_pred HHHHHHHHHHHhccccccCcccc
Q 038048 234 SFERAIQMLTELESPSVLKLTEL 256 (575)
Q Consensus 234 slerA~elL~ele~al~~~p~~~ 256 (575)
..++..+++..++.++.++|..+
T Consensus 153 ~~g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 153 GKGLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HTTCHHHHHHHHHHHHHTTHHHH
T ss_pred HCCCHHHHHHHHHHHHhCCccCH
Confidence 23445555556666666666543
No 51
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.51 E-value=1.5e-13 Score=136.90 Aligned_cols=166 Identities=13% Similarity=0.079 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhh
Q 038048 56 PYVRAKHIQLIDKDPSRAVSLFWAAINAGDR------VDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNI 129 (575)
Q Consensus 56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~------~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~ 129 (575)
.|.+++.++...+++++|+..|.+++.+.+. ...++.++|.+|..+|++++|+.++..+++..... ...
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~-----g~~ 113 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR-----GQF 113 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-----TCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-----CCH
Confidence 3566777888899999999999999987421 25689999999999999999999977665543211 011
Q ss_pred HHHHHHHhHHHHHHHHh-ch--------hhHHhhcCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048 130 EEGIAFAGVKTKMARSQ-GK--------KIQITVEQEK------SRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK 194 (575)
Q Consensus 130 ~~a~a~~~nla~al~sq-g~--------k~aL~L~Pd~------~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~ 194 (575)
......+.+++.++... |+ ..++.+.|.. ..++.++|.+|..+|+|++|+.+|++++++.|++..
T Consensus 114 ~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 193 (292)
T 1qqe_A 114 RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL 193 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc
Confidence 11123344555555553 44 2344554432 346778888888888888888888888888776532
Q ss_pred --------HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 195 --------QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 195 --------~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
++++|.+|..+|++++|+.+|+++++++|+..
T Consensus 194 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 233 (292)
T 1qqe_A 194 SQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA 233 (292)
T ss_dssp TGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence 46778888888888888888888888777644
No 52
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.51 E-value=5.2e-13 Score=117.70 Aligned_cols=129 Identities=10% Similarity=0.032 Sum_probs=110.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHH
Q 038048 57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFA 136 (575)
Q Consensus 57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~ 136 (575)
+...+..++..+++++|+.+|.+++..+|....+++++|.+|...|++++|+.++..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~----------------------- 72 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR----------------------- 72 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-----------------------
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH-----------------------
Confidence 444556677889999999999999999999999999999999999999999988433
Q ss_pred hHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HH--HHHHHHHHcCCHHHHHH
Q 038048 137 GVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QC--NLAICLMHMNRVTEAKS 213 (575)
Q Consensus 137 ~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~--NLA~iy~~qGr~eEAi~ 213 (575)
++.++|.+..+++++|.+|..+|++++|+.+|+++++++|++.. +. .++.++..+|++++|+.
T Consensus 73 --------------a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~ 138 (166)
T 1a17_A 73 --------------AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA 138 (166)
T ss_dssp --------------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------HHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24557888889999999999999999999999999999999988 64 45555889999999999
Q ss_pred HHHHHHHHc
Q 038048 214 LLQAVKISA 222 (575)
Q Consensus 214 lLekALel~ 222 (575)
+++++..+.
T Consensus 139 ~~~~~~~~~ 147 (166)
T 1a17_A 139 GDEHKRSVV 147 (166)
T ss_dssp HHHHHHHHH
T ss_pred cccchHHHh
Confidence 999887754
No 53
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.51 E-value=2.1e-13 Score=117.44 Aligned_cols=100 Identities=16% Similarity=0.059 Sum_probs=92.7
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHH
Q 038048 87 VDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLA 166 (575)
Q Consensus 87 ~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG 166 (575)
.+..++.+|.++...|++++|+.++.. ++.++|++..+++++|
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~-------------------------------------al~~~p~~~~~~~~~a 45 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTE-------------------------------------MIKRAPEDARGYSNRA 45 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------------------------HHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHH-------------------------------------HHHhCCCChHHHHHHH
Confidence 456788999999999999999998544 3566899999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Q 038048 167 WAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAG 223 (575)
Q Consensus 167 ~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P 223 (575)
.+|..+|++++|+.+|+++++++|++.. ++++|.+|..+|++++|+..|+++++++|
T Consensus 46 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 103 (126)
T 3upv_A 46 AALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDA 103 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999 99999999999999999999999999993
No 54
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.50 E-value=1.1e-12 Score=135.86 Aligned_cols=171 Identities=12% Similarity=0.004 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc---------CCCcHHHHHHHHHHHHHCCCHHHHHHHHhcC------------
Q 038048 56 PYVRAKHIQLIDKDPSRAVSLFWAAINA---------GDRVDSALKDMAVVMKQLDRSDEAIEARSGR------------ 114 (575)
Q Consensus 56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l---------~p~~~~Al~nLA~iy~qqGrydEAie~~~ga------------ 114 (575)
.|...+.++...|++++|+.+|++|+++ ++....++.+||.+|..+|++++|+.++.++
T Consensus 53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~ 132 (472)
T 4g1t_A 53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR 132 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccc
Confidence 4555677888899999999999999875 5667788999999999999999999874333
Q ss_pred ---------------------HHHHHHHHHHHHHhhHHHHHHHhHHHHHHHH---hch--------hhHHhhcCCcHHHH
Q 038048 115 ---------------------IEEEIELLQNKLKNIEEGIAFAGVKTKMARS---QGK--------KIQITVEQEKSRIL 162 (575)
Q Consensus 115 ---------------------LeeAi~lL~~~L~l~~~a~a~~~nla~al~s---qg~--------k~aL~L~Pd~~~a~ 162 (575)
+++|+..+.+.+...+....++..++.++.. .++ +.++.++|++..++
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~ 212 (472)
T 4g1t_A 133 IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLK 212 (472)
T ss_dssp CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHH
T ss_pred hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHH
Confidence 3445555555554444433444444444332 222 45788899999999
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 163 GNLAWAYMQ----QNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 163 ~nLG~aY~~----qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
.++|..+.. .|++++|+.+|++++.++|++.. +.+||.+|..+|++++|+.+|+++++.+|++.
T Consensus 213 ~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 281 (472)
T 4g1t_A 213 VLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNA 281 (472)
T ss_dssp HHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChH
Confidence 999876655 46788999999999999999999 99999999999999999999999999999764
No 55
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.50 E-value=2.7e-13 Score=146.84 Aligned_cols=139 Identities=14% Similarity=0.022 Sum_probs=119.9
Q ss_pred CCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhH
Q 038048 51 PSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIE 130 (575)
Q Consensus 51 ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~ 130 (575)
|.....+...+..+...+++++|+.+|+++++.+|++..++++||.+|..+|++++|+.++..
T Consensus 20 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~----------------- 82 (568)
T 2vsy_A 20 PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ----------------- 82 (568)
T ss_dssp -CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-----------------
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH-----------------
Confidence 333445555667777788888888888888888888888888888888888888888887433
Q ss_pred HHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHc---C
Q 038048 131 EGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHM---N 206 (575)
Q Consensus 131 ~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~q---G 206 (575)
++.++|++..++++||.+|..+|++++|+.+|+++++++|++.. +.+||.+|..+ |
T Consensus 83 --------------------al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g 142 (568)
T 2vsy_A 83 --------------------ASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWR 142 (568)
T ss_dssp --------------------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCT
T ss_pred --------------------HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccc
Confidence 35668999999999999999999999999999999999999999 99999999999 9
Q ss_pred CHHHHHHHHHHHHHHcCCCC
Q 038048 207 RVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 207 r~eEAi~lLekALel~P~n~ 226 (575)
++++|+..|+++++.+|.+.
T Consensus 143 ~~~~A~~~~~~al~~~p~~~ 162 (568)
T 2vsy_A 143 ALDVLSAQVRAAVAQGVGAV 162 (568)
T ss_dssp THHHHHHHHHHHHHHTCCCS
T ss_pred cHHHHHHHHHHHHhcCCccc
Confidence 99999999999999999764
No 56
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.49 E-value=1.1e-12 Score=126.49 Aligned_cols=163 Identities=20% Similarity=0.254 Sum_probs=120.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHh
Q 038048 57 YVRAKHIQLIDKDPSRAVSLFWAAINA--------GDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKN 128 (575)
Q Consensus 57 yarA~~l~l~~kd~eeAi~lf~kAL~l--------~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l 128 (575)
+...+..+...+++++|+.+|++++.. .+....++..+|.+|...|++++|+.++..+++.....++. .
T Consensus 30 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~ 106 (311)
T 3nf1_A 30 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK---D 106 (311)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT---T
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC---C
Confidence 444556778899999999999999984 55567789999999999999999999976665543222100 0
Q ss_pred hHHHHHHHhHHHHHHHHhch--------hhHHhh--------cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 038048 129 IEEGIAFAGVKTKMARSQGK--------KIQITV--------EQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSL---- 188 (575)
Q Consensus 129 ~~~a~a~~~nla~al~sqg~--------k~aL~L--------~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALei---- 188 (575)
.+.....+.+++.++...|+ ..++.+ .|....+++++|.+|..+|++++|+.+|++++++
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 11112334444555544444 122332 2555668999999999999999999999999998
Q ss_pred ----CCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 038048 189 ----GVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISA 222 (575)
Q Consensus 189 ----dPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~ 222 (575)
.|.... +.+||.+|..+|++++|+.+|+++++..
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 225 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA 225 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 565666 8899999999999999999999999864
No 57
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.49 E-value=1.3e-13 Score=154.76 Aligned_cols=150 Identities=11% Similarity=-0.043 Sum_probs=127.4
Q ss_pred HHcCChHHHHHHHHHHH--------HcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHH
Q 038048 65 LIDKDPSRAVSLFWAAI--------NAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFA 136 (575)
Q Consensus 65 l~~kd~eeAi~lf~kAL--------~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~ 136 (575)
+..+++++|+..|++++ +.+|++..+++.+|.+|.++|++++|+..+..+++.. +.....+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-----------p~~~~a~ 470 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-----------GWRWRLV 470 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----------CCCHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-----------cchHHHH
Confidence 56789999999999999 8999999999999999999999999999976655432 2222334
Q ss_pred hHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCC
Q 038048 137 GVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNR 207 (575)
Q Consensus 137 ~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr 207 (575)
.+++.++...|+ +.++.++|++..++++||.+|..+|++++ +.+|++|++++|++.. +++||.+|..+|+
T Consensus 471 ~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~ 549 (681)
T 2pzi_A 471 WYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGD 549 (681)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCC
Confidence 444455554444 45788899999999999999999999999 9999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCC
Q 038048 208 VTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 208 ~eEAi~lLekALel~P~n~ 226 (575)
+++|+..|+++++++|++.
T Consensus 550 ~~~A~~~~~~al~l~P~~~ 568 (681)
T 2pzi_A 550 RVGAVRTLDEVPPTSRHFT 568 (681)
T ss_dssp HHHHHHHHHTSCTTSTTHH
T ss_pred HHHHHHHHHhhcccCcccH
Confidence 9999999999999998754
No 58
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.48 E-value=6.3e-13 Score=139.11 Aligned_cols=158 Identities=12% Similarity=0.041 Sum_probs=132.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHH
Q 038048 57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFA 136 (575)
Q Consensus 57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~ 136 (575)
+...+..+...+++++|+.+|++++..+|. ..+++.+|.+|...|++++|+.++...++.. +.....+
T Consensus 246 ~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----------~~~~~~~ 313 (537)
T 3fp2_A 246 LCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLN-----------PEYPPTY 313 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-----------TTCHHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccC-----------CCCHHHH
Confidence 445556677889999999999999999999 8899999999999999999999866554422 1122334
Q ss_pred hHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCC
Q 038048 137 GVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNR 207 (575)
Q Consensus 137 ~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr 207 (575)
..++.++...|+ ..++.++|++..++.++|.+|..+|++++|+.+|+++++++|++.. +.++|.+|..+|+
T Consensus 314 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 393 (537)
T 3fp2_A 314 YHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGD 393 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Confidence 444455554444 3467789999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCC
Q 038048 208 VTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 208 ~eEAi~lLekALel~P~n~ 226 (575)
+++|+.+|+++++..|++.
T Consensus 394 ~~~A~~~~~~a~~~~~~~~ 412 (537)
T 3fp2_A 394 FDTAIKQYDIAKRLEEVQE 412 (537)
T ss_dssp HHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHcCCcch
Confidence 9999999999999988654
No 59
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.48 E-value=3e-13 Score=122.28 Aligned_cols=115 Identities=12% Similarity=0.054 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHH
Q 038048 56 PYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAF 135 (575)
Q Consensus 56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~ 135 (575)
.+...+.++...+++++|+.+|+++|+++|++..++++||.+|..+|++++|+..+..
T Consensus 33 ~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~---------------------- 90 (150)
T 4ga2_A 33 KGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRR---------------------- 90 (150)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH----------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHH----------------------
Confidence 3445667788899999999999999999999999999999999999999999998544
Q ss_pred HhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhCCCCHH-HHHHHHHHHHcCC
Q 038048 136 AGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQY-YRKALSLGVDMNK-QCNLAICLMHMNR 207 (575)
Q Consensus 136 ~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~-yrkALeidPdn~~-~~NLA~iy~~qGr 207 (575)
++.++|++..++++||.+|..+|++++|+.. +++|++++|+++. +..++.++..+|+
T Consensus 91 ---------------al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 91 ---------------SVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp ---------------HHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred ---------------HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 3567999999999999999999999987765 5999999999999 7788999988885
No 60
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.48 E-value=4.2e-13 Score=118.27 Aligned_cols=100 Identities=16% Similarity=0.177 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHH
Q 038048 88 DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAW 167 (575)
Q Consensus 88 ~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~ 167 (575)
+.++.+||.+|.++|+|++|+.++.. ++.++|++..+++++|.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~-------------------------------------Al~~~p~~~~~~~nlg~ 50 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDK-------------------------------------AIELDPSNITFYNNKAA 50 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH-------------------------------------HHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH-------------------------------------HHHhCCCCHHHHHhHHH
Confidence 45788999999999999999998644 35679999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCH-------H-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 038048 168 AYMQQNNFEMAEQYYRKALSLGVDMN-------K-QCNLAICLMHMNRVTEAKSLLQAVKISAGN 224 (575)
Q Consensus 168 aY~~qGryeEAe~~yrkALeidPdn~-------~-~~NLA~iy~~qGr~eEAi~lLekALel~P~ 224 (575)
+|..+|+|++|+.+|++||+++|++. . ++++|.+|..+|++++|+.+|+++|...|+
T Consensus 51 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 51 VYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 99999999999999999999998764 3 678999999999999999999999998874
No 61
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.48 E-value=1.1e-12 Score=135.89 Aligned_cols=61 Identities=15% Similarity=0.022 Sum_probs=52.6
Q ss_pred CCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhc
Q 038048 53 GDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSG 113 (575)
Q Consensus 53 ~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~g 113 (575)
....+...+..++..+++++|+..|+++++.+|.+..+++.+|.+|..+|++++|+..+..
T Consensus 38 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 98 (514)
T 2gw1_A 38 DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSV 98 (514)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3445566677778889999999999999999999999999999999999999999987544
No 62
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.47 E-value=4.5e-13 Score=138.76 Aligned_cols=65 Identities=22% Similarity=0.133 Sum_probs=44.9
Q ss_pred HHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048 161 ILGNLAWAYMQ---QNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNR 225 (575)
Q Consensus 161 a~~nLG~aY~~---qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n 225 (575)
+++++|.+|.. +|++++|+.+|+++++++|++.. ++++|.+|..+|++++|+.+|++++++.|++
T Consensus 414 ~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 482 (514)
T 2gw1_A 414 PLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTM 482 (514)
T ss_dssp HHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSH
T ss_pred HHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcccc
Confidence 66667777766 67777777777777777776666 6667777777777777777777777766653
No 63
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.47 E-value=1.1e-12 Score=125.11 Aligned_cols=170 Identities=10% Similarity=-0.052 Sum_probs=117.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHH---------HHHH
Q 038048 57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDRV---DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIE---------LLQN 124 (575)
Q Consensus 57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~---~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~---------lL~~ 124 (575)
+...+..++..|++++|+..|++++...|.. ..+++.+|.+|..+|++++|+..+...++.... .++.
T Consensus 7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~ 86 (225)
T 2yhc_A 7 IYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGL 86 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHH
Confidence 4445567788999999999999999988875 468999999999999999999997665543211 0000
Q ss_pred HHHhhH-HHHHHHhHHHHHHHHhch--------hhHHhhcCCcHHHH-----------------HHHHHHHHHcCCHHHH
Q 038048 125 KLKNIE-EGIAFAGVKTKMARSQGK--------KIQITVEQEKSRIL-----------------GNLAWAYMQQNNFEMA 178 (575)
Q Consensus 125 ~L~l~~-~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~-----------------~nLG~aY~~qGryeEA 178 (575)
...... .....+..++..+...|+ +..+...|+...+. ..+|.+|..+|++++|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A 166 (225)
T 2yhc_A 87 TNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAV 166 (225)
T ss_dssp HHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 000000 000000000111111111 23455566655332 6788999999999999
Q ss_pred HHHHHHHHHhCCCCH---H-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 179 EQYYRKALSLGVDMN---K-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 179 e~~yrkALeidPdn~---~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
+..|+++++..|+++ . ++.+|.+|..+|++++|+..+++++...|++.
T Consensus 167 ~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 167 VNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred HHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 999999999999886 3 88899999999999999999999888888765
No 64
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.47 E-value=3.4e-13 Score=128.33 Aligned_cols=123 Identities=18% Similarity=0.141 Sum_probs=109.7
Q ss_pred cCChHHHHHHHHHHHHcC----CCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHH
Q 038048 67 DKDPSRAVSLFWAAINAG----DRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKM 142 (575)
Q Consensus 67 ~kd~eeAi~lf~kAL~l~----p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~a 142 (575)
.+++++|+.+|.++++.. |....+++.+|.+|...|++++|+.++..
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----------------------------- 68 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQ----------------------------- 68 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-----------------------------
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHH-----------------------------
Confidence 357899999999999974 44567899999999999999999998543
Q ss_pred HHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038048 143 ARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKIS 221 (575)
Q Consensus 143 l~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel 221 (575)
++.++|++..+++++|.+|..+|++++|+.+|+++++++|++.. ++++|.+|..+|++++|+.+|++++++
T Consensus 69 --------al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 140 (275)
T 1xnf_A 69 --------ALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD 140 (275)
T ss_dssp --------HHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------HHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 24568888999999999999999999999999999999999998 999999999999999999999999999
Q ss_pred cCCCC
Q 038048 222 AGNRQ 226 (575)
Q Consensus 222 ~P~n~ 226 (575)
.|++.
T Consensus 141 ~~~~~ 145 (275)
T 1xnf_A 141 DPNDP 145 (275)
T ss_dssp CTTCH
T ss_pred CCCCh
Confidence 98764
No 65
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.47 E-value=6.9e-13 Score=126.59 Aligned_cols=159 Identities=11% Similarity=-0.016 Sum_probs=114.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHH
Q 038048 57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFA 136 (575)
Q Consensus 57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~ 136 (575)
|...+.++...+++++|+.+|++++..+|....++.++|.+|..+|++++|+.++..+++. .+.....+
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----------~~~~~~~~ 145 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-----------TTTDPKVF 145 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-----------SCCCHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-----------CCCcHHHH
Confidence 4455556666677777777777777777776667777777777777777777765554432 11111222
Q ss_pred hHHH-HHHHHhch-------hhHHhhcCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhC---CCC-----HH-HH
Q 038048 137 GVKT-KMARSQGK-------KIQITVEQEKSRILGNLAWAYMQQNN---FEMAEQYYRKALSLG---VDM-----NK-QC 196 (575)
Q Consensus 137 ~nla-~al~sqg~-------k~aL~L~Pd~~~a~~nLG~aY~~qGr---yeEAe~~yrkALeid---Pdn-----~~-~~ 196 (575)
.+++ ..+....- ..++.++|++..+++++|.++..+|+ +++|+.+|++++++. |+. .. +.
T Consensus 146 ~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 225 (272)
T 3u4t_A 146 YELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANE 225 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 2333 22211100 34678899999999999999999999 999999999999987 653 24 78
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 197 NLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 197 NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
+||.+|..+|++++|+.+|+++++++|++.
T Consensus 226 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 255 (272)
T 3u4t_A 226 YIAYYYTINRDKVKADAAWKNILALDPTNK 255 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCccHH
Confidence 899999999999999999999999999865
No 66
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.46 E-value=8.4e-13 Score=135.23 Aligned_cols=129 Identities=16% Similarity=0.180 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc---------------HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHH
Q 038048 56 PYVRAKHIQLIDKDPSRAVSLFWAAINAGDRV---------------DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIE 120 (575)
Q Consensus 56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~---------------~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~ 120 (575)
.+...+..++..+++++|+.+|++++.++|.. ..++++||.+|..+|++++|+.++..
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~------- 221 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNK------- 221 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-------
Confidence 34456677788999999999999999999998 58999999999999999999998544
Q ss_pred HHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHH
Q 038048 121 LLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLA 199 (575)
Q Consensus 121 lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA 199 (575)
++.++|++..+++++|.+|..+|++++|+.+|++|++++|++.. +.+||
T Consensus 222 ------------------------------al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~ 271 (336)
T 1p5q_A 222 ------------------------------ALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLA 271 (336)
T ss_dssp ------------------------------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred ------------------------------HHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 35678999999999999999999999999999999999999999 99999
Q ss_pred HHHHHcCCHHHH-HHHHHHHHHH
Q 038048 200 ICLMHMNRVTEA-KSLLQAVKIS 221 (575)
Q Consensus 200 ~iy~~qGr~eEA-i~lLekALel 221 (575)
.++..+|++++| ..+|++++..
T Consensus 272 ~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 272 VCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 5677777764
No 67
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.45 E-value=2.3e-12 Score=121.83 Aligned_cols=130 Identities=18% Similarity=0.196 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHH
Q 038048 56 PYVRAKHIQLIDKDPSRAVSLFWAAINA--------GDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLK 127 (575)
Q Consensus 56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l--------~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~ 127 (575)
.+...+.++...+++++|+.+|.+++.. .+....++++||.+|..+|++++|+.++..+++......+..
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-- 122 (283)
T 3edt_B 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF-- 122 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT--
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC--
Confidence 3445667778899999999999999987 344567899999999999999999999766554322211100
Q ss_pred hhHHHHHHHhHHHHHHHHhch--------hhHHhh--------cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 038048 128 NIEEGIAFAGVKTKMARSQGK--------KIQITV--------EQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSL 188 (575)
Q Consensus 128 l~~~a~a~~~nla~al~sqg~--------k~aL~L--------~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALei 188 (575)
.+.....+.+++.++...|+ ..++.+ .|....++.++|.+|..+|++++|+.+|++++++
T Consensus 123 -~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 123 -HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp -CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 01111223333333333333 112222 3334445566666666666666666666666654
No 68
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.45 E-value=2.6e-12 Score=110.78 Aligned_cols=106 Identities=23% Similarity=0.146 Sum_probs=96.4
Q ss_pred cCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHH
Q 038048 83 AGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRIL 162 (575)
Q Consensus 83 l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~ 162 (575)
.++....+++.+|.++...|++++|+.++.. ++.++|++..++
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~-------------------------------------al~~~~~~~~~~ 46 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGR-------------------------------------AITRNPLVAVYY 46 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------------------------HHHHCTTCHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHH-------------------------------------HHhhCcCcHHHH
Confidence 4566788999999999999999999998543 245689999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048 163 GNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNR 225 (575)
Q Consensus 163 ~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n 225 (575)
+++|.+|..+|++++|+.+|+++++++|++.. ++++|.+|..+|++++|+.+|++++.+.|++
T Consensus 47 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 110 (137)
T 3q49_B 47 TNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 110 (137)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhH
Confidence 99999999999999999999999999999999 9999999999999999999999999999873
No 69
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.44 E-value=1.3e-12 Score=123.04 Aligned_cols=130 Identities=11% Similarity=-0.059 Sum_probs=107.5
Q ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch--------hhHHhhcC
Q 038048 85 DRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK--------KIQITVEQ 156 (575)
Q Consensus 85 p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~--------k~aL~L~P 156 (575)
+.++.+++++|.+|...|++++|+..+..+++.... .....+.+++.++...|+ ..++.++|
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 73 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNN----------QDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY 73 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT----------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCC----------CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc
Confidence 345678999999999999999999997665543210 112233335555555555 45688899
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------H-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 038048 157 EKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMN-------K-QCNLAICLMHMNRVTEAKSLLQAVKISAGN 224 (575)
Q Consensus 157 d~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~-------~-~~NLA~iy~~qGr~eEAi~lLekALel~P~ 224 (575)
++..+++++|.+|..+|++++|+.+|+++++++|++. . ++++|.++..+|++++|+.+|+++++++|+
T Consensus 74 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 149 (228)
T 4i17_A 74 NLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSK 149 (228)
T ss_dssp SHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCH
T ss_pred chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999998 6 889999999999999999999999999987
No 70
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.43 E-value=1.2e-13 Score=141.61 Aligned_cols=137 Identities=15% Similarity=0.031 Sum_probs=110.5
Q ss_pred CChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhc
Q 038048 68 KDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQG 147 (575)
Q Consensus 68 kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg 147 (575)
+++++|+.+|++++..+|....+++++|.+|..+|+|++|+.++..+++...... .. .
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~-----------------~ 184 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYES-----SF-----------------S 184 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCC-----CC-----------------C
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccc-----cC-----------------C
Confidence 4567788888888888888889999999999999999999998655433211000 00 0
Q ss_pred hhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 148 KKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 148 ~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
......+.+....++++||.+|..+|+|++|+.+|++||+++|++.. ++++|.+|..+|++++|+.+|+++++++|++.
T Consensus 185 ~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~ 264 (336)
T 1p5q_A 185 NEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNK 264 (336)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
Confidence 00011222333679999999999999999999999999999999999 99999999999999999999999999999865
No 71
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.43 E-value=1.4e-12 Score=123.04 Aligned_cols=114 Identities=19% Similarity=0.028 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHH
Q 038048 89 SALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWA 168 (575)
Q Consensus 89 ~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~a 168 (575)
..+.++|+++.+.|+|++|+..|.++++....... . ..+...|.+..+|+|+|.+
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~--------~-----------------~a~~~~~~~a~a~~n~g~a 66 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPP--------E-----------------EAFDHAGFDAFCHAGLAEA 66 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCT--------T-----------------SCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcc--------h-----------------hhhhhccchHHHHHHHHHH
Confidence 45778999999999999999997665432111000 0 0001112234499999999
Q ss_pred HHHcCCHHHHHHHHHHHHHh-------CCCCHH-H----HHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCC
Q 038048 169 YMQQNNFEMAEQYYRKALSL-------GVDMNK-Q----CNLAICLMHMNRVTEAKSLLQAVKISAGNRQM 227 (575)
Q Consensus 169 Y~~qGryeEAe~~yrkALei-------dPdn~~-~----~NLA~iy~~qGr~eEAi~lLekALel~P~n~~ 227 (575)
+..+|+|++|+.+|.+||++ +|++.. + +|+|.+|..+|+++||+..|++++++.|++.+
T Consensus 67 l~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 67 LAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 99999999999999999999 999999 9 99999999999999999999999999998875
No 72
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.42 E-value=2.4e-12 Score=116.03 Aligned_cols=137 Identities=14% Similarity=0.110 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHH
Q 038048 88 DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAW 167 (575)
Q Consensus 88 ~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~ 167 (575)
...+..+|..+.+.|+|++|+..|..++.......... .+. ......++|....+++++|.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~---~~~----------------~~~~~~~~~~~~~~~~nla~ 71 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILRE---KPG----------------EPEWVELDRKNIPLYANMSQ 71 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTS---CTT----------------SHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccC---CCC----------------HHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999766544211110000 000 00012336777789999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHHHh
Q 038048 168 AYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMDTSYSRSFERAIQMLTEL 245 (575)
Q Consensus 168 aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~~~~~l~slerA~elL~el 245 (575)
+|..+|+|++|+.+|++||+++|++.. ++++|.+|..+|++++|+..|++++.++|++. ......+..+...+.+.
T Consensus 72 ~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~--~~~~~~l~~~~~~~~~~ 148 (162)
T 3rkv_A 72 CYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA--SVVAREMKIVTERRAEK 148 (162)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH--HHHHHHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 99999999999999999999999999999753 12233444555554443
No 73
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.42 E-value=1.1e-12 Score=140.56 Aligned_cols=158 Identities=13% Similarity=0.060 Sum_probs=128.6
Q ss_pred cCCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHC---------CCHHHHHHHHhcCHHHHH
Q 038048 49 KVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQL---------DRSDEAIEARSGRIEEEI 119 (575)
Q Consensus 49 ~~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qq---------GrydEAie~~~gaLeeAi 119 (575)
..|.....+...+.++...+++++|+.+|+++++++|+ ..++++||.+|..+ |++++|+.++..+++...
T Consensus 132 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p 210 (474)
T 4abn_A 132 LEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV 210 (474)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC
Confidence 44444556667778888899999999999999999999 68999999999999 999999998766554322
Q ss_pred HHHHHHHHhhHHHHHHHhHHHHHHHHh--------ch--------hhHHhhcC---CcHHHHHHHHHHHHHcCCHHHHHH
Q 038048 120 ELLQNKLKNIEEGIAFAGVKTKMARSQ--------GK--------KIQITVEQ---EKSRILGNLAWAYMQQNNFEMAEQ 180 (575)
Q Consensus 120 ~lL~~~L~l~~~a~a~~~nla~al~sq--------g~--------k~aL~L~P---d~~~a~~nLG~aY~~qGryeEAe~ 180 (575)
.....+.+++.++... ++ ..++.++| ++..+++++|.+|..+|++++|+.
T Consensus 211 -----------~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~ 279 (474)
T 4abn_A 211 -----------LDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALE 279 (474)
T ss_dssp -----------TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -----------CCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHH
Confidence 2222333344444333 32 35678899 999999999999999999999999
Q ss_pred HHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHH
Q 038048 181 YYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAV 218 (575)
Q Consensus 181 ~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekA 218 (575)
+|++|++++|++.. +.+++.++..+|++++|+..+.++
T Consensus 280 ~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 280 GFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999 999999999999999999876543
No 74
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.42 E-value=7.5e-13 Score=115.88 Aligned_cols=100 Identities=17% Similarity=0.074 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHH
Q 038048 90 ALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAY 169 (575)
Q Consensus 90 Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY 169 (575)
.++.+|.++.+.|++++|+..+.. ++.++|++..++++||.+|
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~-------------------------------------al~~~P~~~~a~~~lg~~~ 61 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEA-------------------------------------VCQKEPEREEAWRSLGLTQ 61 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHH-------------------------------------HHHHSTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHH-------------------------------------HHHHCCCCHHHHHHHHHHH
Confidence 467899999999999999998533 3567999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 170 MQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 170 ~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
..+|++++|+.+|++|++++|++.. +++||.+|..+|++++|+..|+++++++|++.
T Consensus 62 ~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 62 AENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence 9999999999999999999999999 99999999999999999999999999998653
No 75
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.42 E-value=4.2e-12 Score=106.25 Aligned_cols=112 Identities=21% Similarity=0.259 Sum_probs=68.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHH
Q 038048 60 AKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVK 139 (575)
Q Consensus 60 A~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nl 139 (575)
.+..+...+++++|+.+|.+++...|....+++.+|.+|...|++++|+.++..
T Consensus 18 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~-------------------------- 71 (131)
T 2vyi_A 18 EGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCER-------------------------- 71 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH--------------------------
T ss_pred HHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHH--------------------------
Confidence 334445566666666666666666666666666666666666666666655322
Q ss_pred HHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCH
Q 038048 140 TKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRV 208 (575)
Q Consensus 140 a~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~ 208 (575)
++.+.|++..+++++|.+|..+|++++|+.+|+++++++|++.. +.++|.++..+|++
T Consensus 72 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 72 -----------AICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp -----------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred -----------HHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 12335555566666666666666666666666666666666666 66666666666554
No 76
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.41 E-value=9.3e-13 Score=124.49 Aligned_cols=155 Identities=23% Similarity=0.271 Sum_probs=113.2
Q ss_pred HcCChHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHh
Q 038048 66 IDKDPSRAVSLFWAAINA--------GDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAG 137 (575)
Q Consensus 66 ~~kd~eeAi~lf~kAL~l--------~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~ 137 (575)
..+++++|+.+|++|+.. .|....++..+|.+|...|++++|+.++..+++.....++. ..+.....+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~~ 89 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGK---DHPAVAATLN 89 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCT---TCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCC---cchHHHHHHH
Confidence 456788888888888873 24556789999999999999999999976665543222100 0111123344
Q ss_pred HHHHHHHHhch--------hhHHhh--------cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCH
Q 038048 138 VKTKMARSQGK--------KIQITV--------EQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSL--------GVDMN 193 (575)
Q Consensus 138 nla~al~sqg~--------k~aL~L--------~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALei--------dPdn~ 193 (575)
+++.++...|+ ..++.+ +|....++.++|.+|..+|++++|+.+|++++++ .|...
T Consensus 90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 169 (283)
T 3edt_B 90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVA 169 (283)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 55555555554 123333 3556679999999999999999999999999998 56666
Q ss_pred H-HHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Q 038048 194 K-QCNLAICLMHMNRVTEAKSLLQAVKISAG 223 (575)
Q Consensus 194 ~-~~NLA~iy~~qGr~eEAi~lLekALel~P 223 (575)
. +.+||.+|..+|++++|+.+|++++++.+
T Consensus 170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 200 (283)
T 3edt_B 170 KTKNNLASCYLKQGKYQDAETLYKEILTRAH 200 (283)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 6 88999999999999999999999998744
No 77
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.41 E-value=3.9e-12 Score=109.38 Aligned_cols=111 Identities=14% Similarity=0.011 Sum_probs=99.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHH
Q 038048 57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFA 136 (575)
Q Consensus 57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~ 136 (575)
+...+..++..+++++|+.+|.+++..+|.+..+++++|.+|..+|++++|+..+..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~----------------------- 63 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK----------------------- 63 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-----------------------
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHH-----------------------
Confidence 445667778899999999999999999999999999999999999999999998533
Q ss_pred hHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHH-HHHHHHHHHH
Q 038048 137 GVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLG------VDMNK-QCNLAICLMH 204 (575)
Q Consensus 137 ~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeid------Pdn~~-~~NLA~iy~~ 204 (575)
++.++|++..+++++|.+|..+|++++|+.+|+++++++ |++.. ...|+.+...
T Consensus 64 --------------al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 64 --------------AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp --------------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred --------------HHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 356789999999999999999999999999999999999 88888 7778877654
No 78
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.41 E-value=1.9e-12 Score=109.58 Aligned_cols=109 Identities=17% Similarity=0.142 Sum_probs=61.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHH
Q 038048 61 KHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKT 140 (575)
Q Consensus 61 ~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla 140 (575)
+..+...+++++|+.+|++++..+|.+..+++++|.+|..+|++++|+.++..
T Consensus 23 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~--------------------------- 75 (133)
T 2lni_A 23 GNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEE--------------------------- 75 (133)
T ss_dssp HHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHH---------------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHH---------------------------
Confidence 34445555566666666666665555555556666666666666665554222
Q ss_pred HHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcC
Q 038048 141 KMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMN 206 (575)
Q Consensus 141 ~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qG 206 (575)
++.++|++..+++++|.+|..+|++++|+.+|+++++++|++.. +.+++.++..+|
T Consensus 76 ----------a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 76 ----------CIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp ----------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred ----------HHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 12334555555566666666666666666666666666665555 555555555554
No 79
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.40 E-value=1.3e-12 Score=146.49 Aligned_cols=159 Identities=11% Similarity=-0.063 Sum_probs=124.5
Q ss_pred CCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhH
Q 038048 51 PSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIE 130 (575)
Q Consensus 51 ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~ 130 (575)
|.....+...+..++..+++++|+..|+++++.+|++..+++++|.+|..+|++++|++.+..+++.. +
T Consensus 430 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-----------P 498 (681)
T 2pzi_A 430 SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTF-----------P 498 (681)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-----------T
T ss_pred ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------C
Confidence 55555666777788889999999999999999999999999999999999999999999976655432 2
Q ss_pred HHHHHHhHHHHHHHHhch-------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHH
Q 038048 131 EGIAFAGVKTKMARSQGK-------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICL 202 (575)
Q Consensus 131 ~a~a~~~nla~al~sqg~-------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy 202 (575)
.....+.+++.++...|+ +.++.++|++..++++||.+|..+|++++|+.+|++|++++|++.. ++++|.+|
T Consensus 499 ~~~~~~~~lg~~~~~~g~~~~~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~ 578 (681)
T 2pzi_A 499 GELAPKLALAATAELAGNTDEHKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTL 578 (681)
T ss_dssp TCSHHHHHHHHHHHHHTCCCTTCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHcCChHHHHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHH
Confidence 222344455555555554 3568889999999999999999999999999999999999999999 99999999
Q ss_pred HHcCCHHHH-HHHHHHHHH
Q 038048 203 MHMNRVTEA-KSLLQAVKI 220 (575)
Q Consensus 203 ~~qGr~eEA-i~lLekALe 220 (575)
+..|+.++| ...+++++.
T Consensus 579 ~~~~~~~~~~~~~~~~A~~ 597 (681)
T 2pzi_A 579 LSGRSTSEVTEEQIRDAAR 597 (681)
T ss_dssp C-------CCHHHHHHHHH
T ss_pred HccCCCCCCCHHHHHHHHH
Confidence 887774444 444444443
No 80
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.40 E-value=3.4e-12 Score=115.20 Aligned_cols=110 Identities=15% Similarity=0.161 Sum_probs=98.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHH
Q 038048 57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFA 136 (575)
Q Consensus 57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~ 136 (575)
+...+..++..+++++|+.+|++++.++|.+..+++++|.+|..+|++++|+.++..
T Consensus 14 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~----------------------- 70 (164)
T 3sz7_A 14 LKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAEL----------------------- 70 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-----------------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHH-----------------------
Confidence 445567778899999999999999999999999999999999999999999998533
Q ss_pred hHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHH
Q 038048 137 GVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLM 203 (575)
Q Consensus 137 ~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~ 203 (575)
++.++|++..+++++|.+|..+|++++|+.+|+++++++|++.. +++++....
T Consensus 71 --------------al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 124 (164)
T 3sz7_A 71 --------------ATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETT 124 (164)
T ss_dssp --------------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred --------------HHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999998 777776543
No 81
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.39 E-value=2.2e-12 Score=118.86 Aligned_cols=101 Identities=6% Similarity=-0.080 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHH
Q 038048 56 PYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAF 135 (575)
Q Consensus 56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~ 135 (575)
.+...+..+...|++++|+.+|++++.++|.++.++++||.+|..+|+|++|+.++..
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~---------------------- 95 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAV---------------------- 95 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH----------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHH----------------------
Confidence 4556667778899999999999999999999999999999999999999999998544
Q ss_pred HhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 038048 136 AGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMN 193 (575)
Q Consensus 136 ~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~ 193 (575)
++.++|+++.+++++|.+|..+|++++|+.+|++|+++.|+..
T Consensus 96 ---------------al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 96 ---------------AFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp ---------------HHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred ---------------HHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 3677999999999999999999999999999999999999876
No 82
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.38 E-value=6.7e-12 Score=128.00 Aligned_cols=161 Identities=10% Similarity=0.036 Sum_probs=119.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHc---CCC---cHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHH
Q 038048 60 AKHIQLIDKDPSRAVSLFWAAINA---GDR---VDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGI 133 (575)
Q Consensus 60 A~~l~l~~kd~eeAi~lf~kAL~l---~p~---~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~ 133 (575)
.+......+++++|+.+|++|+.+ .++ ...+++++|.+|..+|++++|+.++..+++.....-. ......
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~~~ 184 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA----YNIRLL 184 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST----THHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc----chHHHH
Confidence 566778899999999999999986 222 4568999999999999999999997766554322100 001111
Q ss_pred HHHhHHHHHHHHhch--------hhHHhhcC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C-CCCH
Q 038048 134 AFAGVKTKMARSQGK--------KIQITVEQ------EKSRILGNLAWAYMQQNNFEMAEQYYRKALSL-----G-VDMN 193 (575)
Q Consensus 134 a~~~nla~al~sqg~--------k~aL~L~P------d~~~a~~nLG~aY~~qGryeEAe~~yrkALei-----d-Pdn~ 193 (575)
..+.+++.++...|+ ..++.+.+ ....++++||.+|..+|++++|+.+|++|+++ + |...
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 264 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence 234455555555554 12333322 22348999999999999999999999999994 5 6666
Q ss_pred H-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 038048 194 K-QCNLAICLMHMNRVTEAKSLLQAVKISAGN 224 (575)
Q Consensus 194 ~-~~NLA~iy~~qGr~eEAi~lLekALel~P~ 224 (575)
. +.+||.+|..+|++++|+.++++++.+.+.
T Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 296 (383)
T 3ulq_A 265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQK 296 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 6 899999999999999999999999998653
No 83
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.38 E-value=1.4e-12 Score=106.81 Aligned_cols=106 Identities=16% Similarity=0.093 Sum_probs=96.2
Q ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHH
Q 038048 84 GDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILG 163 (575)
Q Consensus 84 ~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~ 163 (575)
+|.+..+++.+|.++...|++++|+.++.. ++.+.|.+..+++
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~-------------------------------------a~~~~~~~~~~~~ 44 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEK-------------------------------------AIQLDPEESKYWL 44 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHH-------------------------------------HHHHCCCCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHH-------------------------------------HHHhCcCCHHHHH
Confidence 566777889999999999999999998533 2456888899999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHH-HHHHHHHHHHc-CCHHHHHHHHHHHHHHcCCCC
Q 038048 164 NLAWAYMQQNNFEMAEQYYRKALSLGVD--MNK-QCNLAICLMHM-NRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 164 nLG~aY~~qGryeEAe~~yrkALeidPd--n~~-~~NLA~iy~~q-Gr~eEAi~lLekALel~P~n~ 226 (575)
++|.+|..+|++++|+.+|+++++++|+ +.. ++++|.+|..+ |++++|+.++++++...|.+.
T Consensus 45 ~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 45 MKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 9999999999999999999999999999 988 99999999999 999999999999999988653
No 84
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.37 E-value=4.5e-12 Score=117.88 Aligned_cols=127 Identities=14% Similarity=0.128 Sum_probs=94.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcH----------------HHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHH
Q 038048 57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDRVD----------------SALKDMAVVMKQLDRSDEAIEARSGRIEEEIE 120 (575)
Q Consensus 57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~----------------~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~ 120 (575)
+...+..++..+++++|+.+|.+++...|... .+++++|.+|..+|++++|+.++..
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~------- 113 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASK------- 113 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH-------
Confidence 44556677888999999999999999888765 6788888888888888888877433
Q ss_pred HHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHH
Q 038048 121 LLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLA 199 (575)
Q Consensus 121 lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA 199 (575)
++.++|++..+++++|.+|..+|++++|+.+|+++++++|++.. +.+|+
T Consensus 114 ------------------------------al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 163 (198)
T 2fbn_A 114 ------------------------------VLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYE 163 (198)
T ss_dssp ------------------------------HHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred ------------------------------HHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 24457777888888888888888888888888888888888888 88888
Q ss_pred HHHHHcCCHHHHH-HHHHHHHH
Q 038048 200 ICLMHMNRVTEAK-SLLQAVKI 220 (575)
Q Consensus 200 ~iy~~qGr~eEAi-~lLekALe 220 (575)
.++..+++..++. ..|.+++.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 164 LCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888888777 44444443
No 85
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.37 E-value=7.5e-12 Score=125.41 Aligned_cols=164 Identities=15% Similarity=0.143 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhh
Q 038048 56 PYVRAKHIQLIDKDPSRAVSLFWAAINAGDRV------DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNI 129 (575)
Q Consensus 56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~------~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~ 129 (575)
.|.+++.++...+++++|+..|.+++.+.+.. ..++.++|.+|..+|++++|+.++..+++..... ...
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~-----g~~ 112 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVEN-----GTP 112 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTT-----TCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc-----CCH
Confidence 35566777888899999999999999875422 4578999999999999999999977766543210 000
Q ss_pred HHHHHHHhHHHHHHHHhch--------hhHHhhcCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--
Q 038048 130 EEGIAFAGVKTKMARSQGK--------KIQITVEQEK------SRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMN-- 193 (575)
Q Consensus 130 ~~a~a~~~nla~al~sqg~--------k~aL~L~Pd~------~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~-- 193 (575)
......+.+++.++.. |+ +.++.+.+.. ..+++++|.+|..+|+|++|+.+|++++++.|++.
T Consensus 113 ~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 191 (307)
T 2ifu_A 113 DTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENY 191 (307)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCh
Confidence 1111233444444444 33 2334443321 46899999999999999999999999999976542
Q ss_pred ----H-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 194 ----K-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 194 ----~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
. ++++|.++..+|++++|+.+|++++ ++|...
T Consensus 192 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~ 228 (307)
T 2ifu_A 192 PTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS 228 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence 2 6789999999999999999999999 888755
No 86
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.36 E-value=2.7e-11 Score=111.01 Aligned_cols=132 Identities=13% Similarity=0.141 Sum_probs=106.0
Q ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch--------hhHHhhc
Q 038048 84 GDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK--------KIQITVE 155 (575)
Q Consensus 84 ~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~--------k~aL~L~ 155 (575)
.|....+++.+|.+|...|++++|+.++...++... .....+..++.++...|+ ..++.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 72 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDP-----------KNELAWLVRAEIYQYLKVNDKAQESFRQALSIK 72 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-----------cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Confidence 466677899999999999999999999665544221 112233334444444444 3457778
Q ss_pred CCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH--hCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 156 QEKSRILGNLAWAYMQQ-NNFEMAEQYYRKALS--LGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 156 Pd~~~a~~nLG~aY~~q-GryeEAe~~yrkALe--idPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
|.+..++.++|.+|... |++++|+.+|+++++ ..|++.. ++++|.+|..+|++++|+.+|+++++..|.+.
T Consensus 73 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 147 (225)
T 2vq2_A 73 PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFP 147 (225)
T ss_dssp TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 99999999999999999 999999999999999 6666677 99999999999999999999999999998764
No 87
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.36 E-value=5.6e-12 Score=106.67 Aligned_cols=106 Identities=16% Similarity=0.126 Sum_probs=96.3
Q ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHH
Q 038048 84 GDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILG 163 (575)
Q Consensus 84 ~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~ 163 (575)
.+....+++.+|.++...|++++|+.++.. ++.++|++..+++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~-------------------------------------al~~~~~~~~~~~ 54 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTE-------------------------------------AIKRNPKDAKLYS 54 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHH-------------------------------------HHTTCTTCHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHH-------------------------------------HHHcCCCcHHHHH
Confidence 345677899999999999999999998433 2456888899999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 164 NLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 164 nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
++|.+|..+|++++|+.+|+++++++|++.. ++++|.+|..+|++++|+.+|+++++.+|.+.
T Consensus 55 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~ 118 (133)
T 2lni_A 55 NRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCK 118 (133)
T ss_dssp HHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCch
Confidence 9999999999999999999999999999999 99999999999999999999999999988654
No 88
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.36 E-value=7.3e-11 Score=114.15 Aligned_cols=149 Identities=11% Similarity=0.021 Sum_probs=98.4
Q ss_pred HHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----CCCHHHHHHHHhcCHHHHHHHHHHHHH
Q 038048 56 PYVRAKHIQLI----DKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQ----LDRSDEAIEARSGRIEEEIELLQNKLK 127 (575)
Q Consensus 56 ~yarA~~l~l~----~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~q----qGrydEAie~~~gaLeeAi~lL~~~L~ 127 (575)
.+...+.++.. .+++++|+.+|+++++.+ +..++++||.+|.. .+++++|+.++..+++.
T Consensus 40 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~---------- 107 (273)
T 1ouv_A 40 GCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL---------- 107 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------
T ss_pred HHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc----------
Confidence 34444455555 666666666666666654 45566666666666 66666666664443321
Q ss_pred hhHHHHHHHhHHHHHHHH----hch--------hhHHhhcCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCC
Q 038048 128 NIEEGIAFAGVKTKMARS----QGK--------KIQITVEQEKSRILGNLAWAYMQ----QNNFEMAEQYYRKALSLGVD 191 (575)
Q Consensus 128 l~~~a~a~~~nla~al~s----qg~--------k~aL~L~Pd~~~a~~nLG~aY~~----qGryeEAe~~yrkALeidPd 191 (575)
.....+.+++.++.. .++ +.++ +..+..++++||.+|.. .+++++|+.+|++++++.
T Consensus 108 ---~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-- 180 (273)
T 1ouv_A 108 ---KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKAC--DLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK-- 180 (273)
T ss_dssp ---TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--
T ss_pred ---CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHH--hcCcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--
Confidence 011233445555544 333 1223 33467788899999988 899999999999998873
Q ss_pred CHH-HHHHHHHHHH----cCCHHHHHHHHHHHHHHcC
Q 038048 192 MNK-QCNLAICLMH----MNRVTEAKSLLQAVKISAG 223 (575)
Q Consensus 192 n~~-~~NLA~iy~~----qGr~eEAi~lLekALel~P 223 (575)
+.. +++||.+|.. .+++++|+.+|+++++..+
T Consensus 181 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 217 (273)
T 1ouv_A 181 DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN 217 (273)
T ss_dssp CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC
Confidence 456 8889999998 8999999999999888754
No 89
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.36 E-value=5.2e-12 Score=114.25 Aligned_cols=103 Identities=15% Similarity=0.019 Sum_probs=93.7
Q ss_pred cHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHH
Q 038048 55 SPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIA 134 (575)
Q Consensus 55 ~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a 134 (575)
..+...+..+...+++++|+.+|++++..+|.+..+++++|.+|..+|++++|+.++..
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~--------------------- 80 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSY--------------------- 80 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH---------------------
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHH---------------------
Confidence 34555667788899999999999999999999999999999999999999999998544
Q ss_pred HHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048 135 FAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK 194 (575)
Q Consensus 135 ~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~ 194 (575)
++.++|+++.+++++|.+|..+|++++|+.+|+++++++|+++.
T Consensus 81 ----------------al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 124 (148)
T 2vgx_A 81 ----------------GAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPE 124 (148)
T ss_dssp ----------------HHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred ----------------HHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCc
Confidence 35678999999999999999999999999999999999999886
No 90
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.36 E-value=1.7e-12 Score=120.80 Aligned_cols=140 Identities=17% Similarity=0.085 Sum_probs=104.8
Q ss_pred cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHh
Q 038048 67 DKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQ 146 (575)
Q Consensus 67 ~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sq 146 (575)
.+++++|...|.......+.....+..+|.++...|+|++|+.++..++.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~------------------------------ 66 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALD------------------------------ 66 (198)
T ss_dssp -----CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------------------
T ss_pred hhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------------------
Confidence 34455555555444443344456788999999999999999998655432
Q ss_pred chhhHHhhcCCc----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHH
Q 038048 147 GKKIQITVEQEK----------------SRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVT 209 (575)
Q Consensus 147 g~k~aL~L~Pd~----------------~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~e 209 (575)
+.|.+ ..+++++|.+|..+|+|++|+.+|+++++++|++.. ++++|.+|..+|+++
T Consensus 67 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~ 139 (198)
T 2fbn_A 67 -------FFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLE 139 (198)
T ss_dssp -------TTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred -------HHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHH
Confidence 12222 268999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHHHhc
Q 038048 210 EAKSLLQAVKISAGNRQMDTSYSRSFERAIQMLTELE 246 (575)
Q Consensus 210 EAi~lLekALel~P~n~~~~~~l~slerA~elL~ele 246 (575)
+|+.+|+++++++|++. .....+..+...+.+..
T Consensus 140 ~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~ 173 (198)
T 2fbn_A 140 EAKENLYKAASLNPNNL---DIRNSYELCVNKLKEAR 173 (198)
T ss_dssp HHHHHHHHHHHHSTTCH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCcH---HHHHHHHHHHHHHHHHH
Confidence 99999999999999754 23344444444444433
No 91
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.36 E-value=1.1e-10 Score=113.01 Aligned_cols=150 Identities=14% Similarity=0.039 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----CCCHHHHHHHHhcCHHHHHHHHHHHHHhhHH
Q 038048 56 PYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQ----LDRSDEAIEARSGRIEEEIELLQNKLKNIEE 131 (575)
Q Consensus 56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~q----qGrydEAie~~~gaLeeAi~lL~~~L~l~~~ 131 (575)
.+...+..+...+++++|+.+|+++++ ++...++++||.+|.. .+++++|+.++..+++..
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------------- 72 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN------------- 72 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------------
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-------------
Confidence 445566777888999999999999999 6677899999999999 999999999976654421
Q ss_pred HHHHHhHHHHHHHH----hch------hhHHhhcCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHH-HH
Q 038048 132 GIAFAGVKTKMARS----QGK------KIQITVEQEKSRILGNLAWAYMQ----QNNFEMAEQYYRKALSLGVDMNK-QC 196 (575)
Q Consensus 132 a~a~~~nla~al~s----qg~------k~aL~L~Pd~~~a~~nLG~aY~~----qGryeEAe~~yrkALeidPdn~~-~~ 196 (575)
....+.+++.++.. .++ .....++.++..++++||.+|.. .+++++|+.+|++|+++. +.. ++
T Consensus 73 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~ 150 (273)
T 1ouv_A 73 YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCT 150 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHH
Confidence 11223344444444 333 01112234588899999999999 999999999999999986 566 99
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHHc
Q 038048 197 NLAICLMH----MNRVTEAKSLLQAVKISA 222 (575)
Q Consensus 197 NLA~iy~~----qGr~eEAi~lLekALel~ 222 (575)
+||.+|.. .+++++|+.+|+++++..
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~ 180 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK 180 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 99999999 999999999999999874
No 92
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.35 E-value=3e-11 Score=120.85 Aligned_cols=57 Identities=16% Similarity=0.119 Sum_probs=32.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHc------CCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCH
Q 038048 59 RAKHIQLIDKDPSRAVSLFWAAINA------GDRVDSALKDMAVVMKQLDRSDEAIEARSGRI 115 (575)
Q Consensus 59 rA~~l~l~~kd~eeAi~lf~kAL~l------~p~~~~Al~nLA~iy~qqGrydEAie~~~gaL 115 (575)
..+..+...+++++|+.+|++++.. .+....++.++|.+|...|++++|+.++..++
T Consensus 52 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 114 (406)
T 3sf4_A 52 QLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHL 114 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444555566666666666666554 12224456666666666666666666644433
No 93
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.35 E-value=6.4e-12 Score=111.45 Aligned_cols=107 Identities=14% Similarity=0.038 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHH
Q 038048 56 PYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAF 135 (575)
Q Consensus 56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~ 135 (575)
.+...+..++..+++++|+.+|++++..+|.+..++++||.+|..+|++++|+.++..
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~---------------------- 77 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSY---------------------- 77 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH----------------------
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHH----------------------
Confidence 3445567778899999999999999999999999999999999999999999998544
Q ss_pred HhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHH
Q 038048 136 AGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLA 199 (575)
Q Consensus 136 ~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA 199 (575)
++.++|+++.+++++|.+|..+|++++|+.+|+++++++|+++. ...+.
T Consensus 78 ---------------al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 78 ---------------GALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAA 127 (142)
T ss_dssp ---------------HHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred ---------------HHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 35678999999999999999999999999999999999999887 44333
No 94
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.35 E-value=6.5e-13 Score=141.99 Aligned_cols=137 Identities=15% Similarity=0.053 Sum_probs=106.9
Q ss_pred ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch
Q 038048 69 DPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK 148 (575)
Q Consensus 69 d~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~ 148 (575)
++++|+..|.+++...|....+++++|.+|.++|+|++|+..|..+++...... ... .
T Consensus 249 ~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~-----------------~ 306 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEY-----GLS-----------------E 306 (457)
T ss_dssp EEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCC-----SCC-----------------H
T ss_pred hcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc-----cCC-----------------h
Confidence 456788888888888888888999999999999999999999766543211100 000 0
Q ss_pred hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCC
Q 038048 149 KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQM 227 (575)
Q Consensus 149 k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~ 227 (575)
.....+++....+|+++|.+|..+|+|++|+.+|++||+++|++.. ++++|.+|..+|++++|+..|+++++++|++..
T Consensus 307 ~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~ 386 (457)
T 1kt0_A 307 KESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA 386 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence 0001122333579999999999999999999999999999999999 999999999999999999999999999998763
No 95
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.35 E-value=6.2e-12 Score=107.26 Aligned_cols=100 Identities=19% Similarity=0.138 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcH---HHHHHHH
Q 038048 90 ALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKS---RILGNLA 166 (575)
Q Consensus 90 Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~---~a~~nLG 166 (575)
+++.+|.++...|++++|+..+... +...|++. .+++++|
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~-------------------------------------~~~~p~~~~~~~~~~~lg 46 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSF-------------------------------------LELYPNGVYTPNALYWLG 46 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHH-------------------------------------HHHCSSSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH-------------------------------------HHHCCCCcccHHHHHHHH
Confidence 5788999999999999999985332 34466666 7999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC---HH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 167 WAYMQQNNFEMAEQYYRKALSLGVDM---NK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 167 ~aY~~qGryeEAe~~yrkALeidPdn---~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
.+|..+|++++|+.+|++++.++|++ .. ++++|.+|..+|++++|+.+|++++...|++.
T Consensus 47 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 110 (129)
T 2xev_A 47 ESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSD 110 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSH
T ss_pred HHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCh
Confidence 99999999999999999999999999 77 99999999999999999999999999998754
No 96
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.34 E-value=3.8e-11 Score=111.98 Aligned_cols=146 Identities=16% Similarity=0.123 Sum_probs=110.8
Q ss_pred CCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhH
Q 038048 51 PSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIE 130 (575)
Q Consensus 51 ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~ 130 (575)
|.....+...+.++...+++++|+.+|++++..+|....+++.+|.+|...|++++|+.++...++.. +
T Consensus 88 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----------~ 156 (243)
T 2q7f_A 88 SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-----------E 156 (243)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-----------T
T ss_pred CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----------C
Confidence 33344455566777889999999999999999999999999999999999999999999865544321 1
Q ss_pred HHHHHHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHH
Q 038048 131 EGIAFAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAIC 201 (575)
Q Consensus 131 ~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~i 201 (575)
.....+..++.++...|+ ..++...|++..++..+|.+|..+|++++|+.+|+++++++|++.. +..++.+
T Consensus 157 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 157 NDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Confidence 112233344444444444 3456778999999999999999999999999999999999999999 8888877
Q ss_pred HHHcCC
Q 038048 202 LMHMNR 207 (575)
Q Consensus 202 y~~qGr 207 (575)
....|+
T Consensus 237 ~~~~~~ 242 (243)
T 2q7f_A 237 GHHHHH 242 (243)
T ss_dssp ------
T ss_pred HhhccC
Confidence 665543
No 97
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.34 E-value=7e-12 Score=129.82 Aligned_cols=50 Identities=18% Similarity=0.161 Sum_probs=40.5
Q ss_pred cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHH---HCCCHHHHHHHHhcCHH
Q 038048 67 DKDPSRAVSLFWAAINAGDRVDSALKDMAVVMK---QLDRSDEAIEARSGRIE 116 (575)
Q Consensus 67 ~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~---qqGrydEAie~~~gaLe 116 (575)
.+++++|+.+|++|+.++|+++.++.++|.++. ..+++++|++.+..+++
T Consensus 151 ~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~ 203 (472)
T 4g1t_A 151 GNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR 203 (472)
T ss_dssp TTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh
Confidence 467999999999999999999999999998855 45777778777544433
No 98
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.34 E-value=3.5e-11 Score=99.78 Aligned_cols=71 Identities=25% Similarity=0.293 Sum_probs=45.1
Q ss_pred cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048 155 EQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNR 225 (575)
Q Consensus 155 ~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n 225 (575)
.|++..+++++|.+|...|++++|+.+|++++.+.|++.. ++++|.+|..+|++++|+.+|++++...|++
T Consensus 39 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 110 (125)
T 1na0_A 39 DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 110 (125)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 4555556666666666666666666666666666666665 6666666666666666666666666666543
No 99
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.33 E-value=1.7e-11 Score=102.60 Aligned_cols=105 Identities=16% Similarity=0.166 Sum_probs=94.5
Q ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHH
Q 038048 85 DRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGN 164 (575)
Q Consensus 85 p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~n 164 (575)
+....+++.+|.++...|++++|+.++... +.+.|++..++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~-------------------------------------~~~~~~~~~~~~~ 51 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKA-------------------------------------IELNPANAVYFCN 51 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------------------------------HHHCTTCHHHHHH
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHH-------------------------------------HHcCCCCHHHHHH
Confidence 344568889999999999999999985432 4457888899999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 165 LAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 165 LG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
+|.+|..+|++++|+.+|+++++++|++.. ++++|.+|..+|++++|+.+|++++...|++.
T Consensus 52 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 114 (131)
T 2vyi_A 52 RAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNE 114 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccch
Confidence 999999999999999999999999999999 99999999999999999999999999998654
No 100
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.33 E-value=3.7e-11 Score=122.76 Aligned_cols=164 Identities=12% Similarity=-0.005 Sum_probs=121.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCC------CcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHH
Q 038048 58 VRAKHIQLIDKDPSRAVSLFWAAINAGD------RVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEE 131 (575)
Q Consensus 58 arA~~l~l~~kd~eeAi~lf~kAL~l~p------~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~ 131 (575)
...+......+++++|+.+|++|+.+.. ....++++||.+|..+|++++|+.++..+++....... ....
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~----~~~~ 180 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPL----YSIR 180 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTT----CHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCC----chhh
Confidence 3355667889999999999999997632 23568999999999999999999997666554332110 0001
Q ss_pred HHHHHhHHHHHHHHhch--------hhHHhhc------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCC
Q 038048 132 GIAFAGVKTKMARSQGK--------KIQITVE------QEKSRILGNLAWAYMQQNNFEMAEQYYRKALS-----LGVDM 192 (575)
Q Consensus 132 a~a~~~nla~al~sqg~--------k~aL~L~------Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALe-----idPdn 192 (575)
....+.+++.++...|+ ..++.+. +....++++||.+|..+|++++|+.+|++|++ .+|..
T Consensus 181 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 260 (378)
T 3q15_A 181 TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL 260 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH
Confidence 11234455555555554 1222221 12245899999999999999999999999999 67777
Q ss_pred HH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048 193 NK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNR 225 (575)
Q Consensus 193 ~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n 225 (575)
.. +++||.+|..+|++++|+.++++++++.+..
T Consensus 261 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 294 (378)
T 3q15_A 261 PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR 294 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 66 8999999999999999999999999997653
No 101
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.33 E-value=1.8e-11 Score=124.12 Aligned_cols=169 Identities=15% Similarity=0.133 Sum_probs=105.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHCCCHHHHHHHHhcC------------------
Q 038048 57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDRVD----SALKDMAVVMKQLDRSDEAIEARSGR------------------ 114 (575)
Q Consensus 57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~----~Al~nLA~iy~qqGrydEAie~~~ga------------------ 114 (575)
+...+..+...+++++|+.+|++++..+|.+. .+++.+|.+|..+|++++|+.++..+
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 33455666677777777777777777777654 46677777777777777777763332
Q ss_pred -----------HHHHHHHHHHHHHh------hHHHHHHHhHHHHHHHHhch-------------------------hhHH
Q 038048 115 -----------IEEEIELLQNKLKN------IEEGIAFAGVKTKMARSQGK-------------------------KIQI 152 (575)
Q Consensus 115 -----------LeeAi~lL~~~L~l------~~~a~a~~~nla~al~sqg~-------------------------k~aL 152 (575)
+++++..+...+.. .......+.+++.++...|+ ..++
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 210 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 22333333333322 11111223333333333322 0111
Q ss_pred hh------cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------H-HHHHHHHHHHcCCHHHHHHHHHHHH
Q 038048 153 TV------EQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMN------K-QCNLAICLMHMNRVTEAKSLLQAVK 219 (575)
Q Consensus 153 ~L------~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~------~-~~NLA~iy~~qGr~eEAi~lLekAL 219 (575)
.+ .+....++.++|.+|..+|++++|+.+|++++++.++.. . ++++|.+|..+|++++|+.+|++++
T Consensus 211 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 211 KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 11 233345888889999999999999999999988876422 1 6688999999999999999999988
Q ss_pred HHcCCC
Q 038048 220 ISAGNR 225 (575)
Q Consensus 220 el~P~n 225 (575)
.+.+..
T Consensus 291 ~~~~~~ 296 (411)
T 4a1s_A 291 ALAVEL 296 (411)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 887643
No 102
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.33 E-value=1.9e-11 Score=100.63 Aligned_cols=102 Identities=22% Similarity=0.231 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHH
Q 038048 88 DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAW 167 (575)
Q Consensus 88 ~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~ 167 (575)
..+++.+|.++...|++++|+.++.. ++.+.|++..+++++|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~-------------------------------------~~~~~~~~~~~~~~~a~ 46 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSE-------------------------------------AIKLDPHNHVLYSNRSA 46 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH-------------------------------------HHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHH-------------------------------------HHHHCCCcHHHHHHHHH
Confidence 46788999999999999999998533 24557888999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 168 AYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 168 aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
+|..+|++++|+.+|+++++++|++.. ++++|.+|..+|++++|+.+|+++++..|++.
T Consensus 47 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 106 (118)
T 1elw_A 47 AYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNP 106 (118)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH
Confidence 999999999999999999999999999 99999999999999999999999999988654
No 103
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1.8e-11 Score=105.70 Aligned_cols=106 Identities=15% Similarity=0.096 Sum_probs=95.0
Q ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCc---HH
Q 038048 84 GDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEK---SR 160 (575)
Q Consensus 84 ~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~---~~ 160 (575)
++.....++.+|.++...|++++|+.++.. ++.+.|++ ..
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~-------------------------------------a~~~~~~~~~~~~ 66 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQ-------------------------------------ALGLDATPQDQAV 66 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHH-------------------------------------HHTSCCCHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHH-------------------------------------HHHHcccchHHHH
Confidence 455677888999999999999999998533 24557776 77
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 161 ILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 161 a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
+++++|.+|..+|++++|+.+|+++++++|++.. ++++|.+|..+|++++|+.+|+++++++|++.
T Consensus 67 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 133 (148)
T 2dba_A 67 LHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNK 133 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 9999999999999999999999999999999998 99999999999999999999999999998754
No 104
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.33 E-value=3.2e-11 Score=115.98 Aligned_cols=66 Identities=18% Similarity=0.216 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------H-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 038048 159 SRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMN------K-QCNLAICLMHMNRVTEAKSLLQAVKISAGN 224 (575)
Q Consensus 159 ~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~------~-~~NLA~iy~~qGr~eEAi~lLekALel~P~ 224 (575)
..++.++|.+|..+|++++|+.+|++++++.+... . +.++|.+|..+|++++|+.+|++++.+.+.
T Consensus 183 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 255 (338)
T 3ro2_A 183 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 255 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 34667777777777777777777777776643221 1 556777777777777777777777766554
No 105
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.33 E-value=6.3e-12 Score=113.21 Aligned_cols=116 Identities=15% Similarity=0.096 Sum_probs=99.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHc------------------CCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHH
Q 038048 57 YVRAKHIQLIDKDPSRAVSLFWAAINA------------------GDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEE 118 (575)
Q Consensus 57 yarA~~l~l~~kd~eeAi~lf~kAL~l------------------~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeA 118 (575)
+...+..++..+++++|+.+|.++|.. +|....+++++|.+|..+|+|++|+..+..
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~----- 88 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE----- 88 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH-----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH-----
Confidence 345667778899999999999999998 677778999999999999999999998433
Q ss_pred HHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-H-HH
Q 038048 119 IELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMN-K-QC 196 (575)
Q Consensus 119 i~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~-~-~~ 196 (575)
++.++|++..+++++|.+|..+|++++|+..|+++++++|++. . ..
T Consensus 89 --------------------------------al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 136 (162)
T 3rkv_A 89 --------------------------------VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAR 136 (162)
T ss_dssp --------------------------------HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred --------------------------------HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 3567999999999999999999999999999999999999999 4 66
Q ss_pred HHHHHHHHcCCHH
Q 038048 197 NLAICLMHMNRVT 209 (575)
Q Consensus 197 NLA~iy~~qGr~e 209 (575)
.|+.+....++..
T Consensus 137 ~l~~~~~~~~~~~ 149 (162)
T 3rkv_A 137 EMKIVTERRAEKK 149 (162)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 7777766554443
No 106
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.33 E-value=1e-11 Score=117.53 Aligned_cols=102 Identities=12% Similarity=0.132 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHH---
Q 038048 88 DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGN--- 164 (575)
Q Consensus 88 ~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~n--- 164 (575)
...+...|..+...|++++|+.++..+++ ++|++..+++.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~-------------------------------------~~p~~~~~~~~~~~ 46 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIA-------------------------------------LNIDRTEMYYWTNV 46 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------------------------HCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------------------------------------hCCCChHHHHHhhh
Confidence 45677899999999999999998655433 34444444444
Q ss_pred -------------HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 165 -------------LAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 165 -------------LG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
+|.+|..+|++++|+.+|+++++++|++.. +++||.+|..+|++++|+.+|+++++++|++.
T Consensus 47 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~ 122 (208)
T 3urz_A 47 DKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNL 122 (208)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred cchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence 999999999999999999999999999999 99999999999999999999999999999875
No 107
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.32 E-value=2.5e-11 Score=101.83 Aligned_cols=116 Identities=12% Similarity=0.174 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHH
Q 038048 88 DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAW 167 (575)
Q Consensus 88 ~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~ 167 (575)
..+++.+|.++...|++++|+.++..+ +.+.|++..+++++|.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a-------------------------------------~~~~~~~~~~~~~la~ 46 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKA-------------------------------------KELDPTNMTYITNQAA 46 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH-------------------------------------HHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHH-------------------------------------HhcCCccHHHHHHHHH
Confidence 467889999999999999999985432 4457888899999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC-------HH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCChhHHHHHHHHH
Q 038048 168 AYMQQNNFEMAEQYYRKALSLGVDM-------NK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMDTSYSRSFERAI 239 (575)
Q Consensus 168 aY~~qGryeEAe~~yrkALeidPdn-------~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~~~~~l~slerA~ 239 (575)
+|..+|++++|+.+|++++.+.|++ .. ++++|.+|..+|++++|+.+|+++++..|+ . .....+..+.
T Consensus 47 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~---~~~~~l~~~~ 122 (131)
T 1elr_A 47 VYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-P---DVLKKCQQAE 122 (131)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-H---HHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-H---HHHHHHHHHH
Confidence 9999999999999999999999877 77 899999999999999999999999999873 2 2333444444
Q ss_pred HHHHH
Q 038048 240 QMLTE 244 (575)
Q Consensus 240 elL~e 244 (575)
..+.+
T Consensus 123 ~~~~~ 127 (131)
T 1elr_A 123 KILKE 127 (131)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 108
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.32 E-value=1.6e-12 Score=140.07 Aligned_cols=127 Identities=11% Similarity=0.072 Sum_probs=110.9
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHH
Q 038048 64 QLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMA 143 (575)
Q Consensus 64 ~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al 143 (575)
+...+++++|+.+|++|++.+|....+++++|.+|.++|++++|++.+..
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~------------------------------ 65 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR------------------------------ 65 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH------------------------------
T ss_pred HHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHH------------------------------
Confidence 34578999999999999999999999999999999999999999998543
Q ss_pred HHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHH--HHHcCCHHHHHHHHH----
Q 038048 144 RSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAIC--LMHMNRVTEAKSLLQ---- 216 (575)
Q Consensus 144 ~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~i--y~~qGr~eEAi~lLe---- 216 (575)
++.++|++..+++++|.+|..+|++++|+.+|++|++++|++.. +.+++.+ +..+|++++|+.+++
T Consensus 66 -------al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~ 138 (477)
T 1wao_1 66 -------AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 138 (477)
T ss_dssp -------HHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCS
T ss_pred -------HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccch
Confidence 35678999999999999999999999999999999999999998 8899988 999999999999999
Q ss_pred -------HHHHHcCCCCC
Q 038048 217 -------AVKISAGNRQM 227 (575)
Q Consensus 217 -------kALel~P~n~~ 227 (575)
+++.+.|+..+
T Consensus 139 ~~~~~~~~al~~~~~~~~ 156 (477)
T 1wao_1 139 VVDSLDIESMTIEDEYSG 156 (477)
T ss_dssp TTTCCTTSSCCCCTTCCS
T ss_pred hHhhhhhhhccccccccc
Confidence 88888776543
No 109
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.32 E-value=1.7e-11 Score=115.91 Aligned_cols=128 Identities=15% Similarity=0.153 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch--------hhHHhhcCCcH
Q 038048 88 DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK--------KIQITVEQEKS 159 (575)
Q Consensus 88 ~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~ 159 (575)
..+++.+|.+|...|++++|+.++..+++.. +.....+..++.++...|+ ..++.++|.+.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 105 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-----------PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNA 105 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-----------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH
Confidence 4577889999999999999999966654431 1112233344444444444 34577789999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 160 RILGNLAWAYMQQNNFEMAEQYYRKALS--LGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 160 ~a~~nLG~aY~~qGryeEAe~~yrkALe--idPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
.++.++|.+|..+|++++|+.+|++++. ..|++.. ++++|.+|..+|++++|+.+|+++++..|.+.
T Consensus 106 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 175 (252)
T 2ho1_A 106 RVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQP 175 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccH
Confidence 9999999999999999999999999999 8888888 99999999999999999999999999998764
No 110
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.31 E-value=4.1e-11 Score=115.65 Aligned_cols=138 Identities=12% Similarity=-0.056 Sum_probs=106.0
Q ss_pred HHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch--------hhHH
Q 038048 81 INAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK--------KIQI 152 (575)
Q Consensus 81 L~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~--------k~aL 152 (575)
....+....+++.+|.++.+.|+|++|+..+...++.... .......+..++.++...|+ ..++
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--------~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l 79 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT--------HEWAADAQFYLARAYYQNKEYLLAASEYERFI 79 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC--------STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC--------CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 3457788899999999999999999999996554432110 00002333444555555554 3456
Q ss_pred hhcC---CcHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHH-H-----------------HHHHHHHH
Q 038048 153 TVEQ---EKSRILGNLAWAYMQ--------QNNFEMAEQYYRKALSLGVDMNK-Q-----------------CNLAICLM 203 (575)
Q Consensus 153 ~L~P---d~~~a~~nLG~aY~~--------qGryeEAe~~yrkALeidPdn~~-~-----------------~NLA~iy~ 203 (575)
.+.| ....+++++|.+|.. +|++++|+..|+++++++|++.. . +++|.+|.
T Consensus 80 ~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~ 159 (261)
T 3qky_A 80 QIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYE 159 (261)
T ss_dssp HHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666 446799999999999 99999999999999999999875 4 88999999
Q ss_pred HcCCHHHHHHHHHHHHHHcCCCC
Q 038048 204 HMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 204 ~qGr~eEAi~lLekALel~P~n~ 226 (575)
.+|++++|+..|+++++..|++.
T Consensus 160 ~~g~~~~A~~~~~~~l~~~p~~~ 182 (261)
T 3qky_A 160 RRELYEAAAVTYEAVFDAYPDTP 182 (261)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTST
T ss_pred HccCHHHHHHHHHHHHHHCCCCc
Confidence 99999999999999999999765
No 111
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.31 E-value=2.5e-11 Score=106.82 Aligned_cols=106 Identities=17% Similarity=0.114 Sum_probs=86.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHh
Q 038048 58 VRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAG 137 (575)
Q Consensus 58 arA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~ 137 (575)
-..|..+...+++++|+.+|.+||+++|.+..+++++|.+|..+|+|++|+..+..+++.......
T Consensus 12 ~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~-------------- 77 (127)
T 4gcn_A 12 KDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRA-------------- 77 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccch--------------
Confidence 356778889999999999999999999999999999999999999999999986554432111000
Q ss_pred HHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 038048 138 VKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMN 193 (575)
Q Consensus 138 nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~ 193 (575)
..+....+++++|.+|..+|++++|+.+|+++|++.|+..
T Consensus 78 ----------------~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~ 117 (127)
T 4gcn_A 78 ----------------DYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPE 117 (127)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCHH
T ss_pred ----------------hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCHH
Confidence 0001134889999999999999999999999999998643
No 112
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.30 E-value=7e-11 Score=97.24 Aligned_cols=109 Identities=14% Similarity=0.082 Sum_probs=97.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHH
Q 038048 57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFA 136 (575)
Q Consensus 57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~ 136 (575)
+...+..+...+++++|+.+|++++..+|.+..+++++|.+|...|++++|+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~----------------------- 63 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK----------------------- 63 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH-----------------------
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHH-----------------------
Confidence 344556778899999999999999999999999999999999999999999987433
Q ss_pred hHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHH
Q 038048 137 GVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICL 202 (575)
Q Consensus 137 ~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy 202 (575)
++.+.|++..+++++|.+|..+|++++|+.+|+++++++|++.. +.+++.+.
T Consensus 64 --------------~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 64 --------------TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp --------------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred --------------HHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 24557888999999999999999999999999999999999998 88888775
No 113
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.30 E-value=2.7e-11 Score=104.30 Aligned_cols=137 Identities=12% Similarity=0.064 Sum_probs=105.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhH
Q 038048 57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDRV------DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIE 130 (575)
Q Consensus 57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~------~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~ 130 (575)
+...+..+...+++++|+.+|++++...+.. ..++.++|.+|..+|++++|+.++..+++.....
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~--------- 82 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL--------- 82 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---------
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---------
Confidence 3445566778899999999999999875432 2478999999999999999999865543321100
Q ss_pred HHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HH-HHHHHHHHH
Q 038048 131 EGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDM------NK-QCNLAICLM 203 (575)
Q Consensus 131 ~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn------~~-~~NLA~iy~ 203 (575)
.-.+....+++++|.+|..+|++++|+.+|++++++.+.. .. +.+||.+|.
T Consensus 83 ----------------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 140 (164)
T 3ro3_A 83 ----------------------KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYT 140 (164)
T ss_dssp ----------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ----------------------CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHH
Confidence 0001113488999999999999999999999999884322 23 679999999
Q ss_pred HcCCHHHHHHHHHHHHHHcCC
Q 038048 204 HMNRVTEAKSLLQAVKISAGN 224 (575)
Q Consensus 204 ~qGr~eEAi~lLekALel~P~ 224 (575)
.+|++++|+.++++++++...
T Consensus 141 ~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 141 ALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHTCHHHHHHHHHHHHHHHTT
T ss_pred HccCHHHHHHHHHHHHHHHHH
Confidence 999999999999999998653
No 114
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.29 E-value=5.8e-11 Score=98.46 Aligned_cols=113 Identities=20% Similarity=0.243 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHH
Q 038048 56 PYVRAKHIQLIDKDPSRAVSLFWAAINA-GDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIA 134 (575)
Q Consensus 56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l-~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a 134 (575)
.+...+..+...+++++|+.+|.++ -. .|....+++.+|.+|...|++++|+.++..
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~--------------------- 68 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKA-LELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK--------------------- 68 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH---------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH-HHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHH---------------------
Confidence 4455566777888999999888764 42 566778889999999999999999887433
Q ss_pred HHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcC
Q 038048 135 FAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMN 206 (575)
Q Consensus 135 ~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qG 206 (575)
++.+.|.+..+++++|.+|..+|++++|+.+|+++++++|++.. +.+||.++..+|
T Consensus 69 ----------------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 69 ----------------ALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp ----------------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred ----------------HHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 24457888999999999999999999999999999999999999 999999998765
No 115
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.29 E-value=1.3e-11 Score=107.94 Aligned_cols=99 Identities=14% Similarity=0.064 Sum_probs=85.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHh
Q 038048 58 VRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAG 137 (575)
Q Consensus 58 arA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~ 137 (575)
...+..++..+++++|+..|++++..+|++..+++.||.++...|++++|+.++..
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~------------------------ 76 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNH------------------------ 76 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH------------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH------------------------
Confidence 44456678899999999999999999999999999999999999999999998533
Q ss_pred HHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 038048 138 VKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMN 193 (575)
Q Consensus 138 nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~ 193 (575)
++.++|++..++++||.+|..+|++++|+.+|+++++++|++.
T Consensus 77 -------------al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 77 -------------ARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp -------------HHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred -------------HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence 3567999999999999999999999999999999999999875
No 116
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.29 E-value=4.9e-11 Score=119.29 Aligned_cols=163 Identities=15% Similarity=0.137 Sum_probs=102.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHCCC--------------------HHHHHHH
Q 038048 57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDRV------DSALKDMAVVMKQLDR--------------------SDEAIEA 110 (575)
Q Consensus 57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~------~~Al~nLA~iy~qqGr--------------------ydEAie~ 110 (575)
+...+.++...|++++|+.+|.+++...+.. ..++.++|.+|...|+ +++|+.+
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 169 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 3345566677899999999999999875543 4489999999999999 8888887
Q ss_pred HhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch--------hhHHhhcCC------cHHHHHHHHHHHHHcCCHH
Q 038048 111 RSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK--------KIQITVEQE------KSRILGNLAWAYMQQNNFE 176 (575)
Q Consensus 111 ~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~--------k~aL~L~Pd------~~~a~~nLG~aY~~qGrye 176 (575)
+..+++..... .........+.+++.++...|+ ..++.+.+. ...+++++|.+|..+|+++
T Consensus 170 ~~~al~~~~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 170 YEENLSLVTAL-----GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhc-----cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 55544332111 0001111223334444444333 112222211 1226777777777777777
Q ss_pred HHHHHHHHHHHhCCCC------HH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 038048 177 MAEQYYRKALSLGVDM------NK-QCNLAICLMHMNRVTEAKSLLQAVKISAGN 224 (575)
Q Consensus 177 EAe~~yrkALeidPdn------~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~ 224 (575)
+|+.+|++++++.|+. .. +.++|.+|..+|++++|+.+|++++.+.+.
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 299 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 299 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence 7777777777766544 33 567777777777777777777777776553
No 117
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.29 E-value=1.9e-11 Score=130.63 Aligned_cols=128 Identities=13% Similarity=0.119 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc---------------HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHH
Q 038048 56 PYVRAKHIQLIDKDPSRAVSLFWAAINAGDRV---------------DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIE 120 (575)
Q Consensus 56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~---------------~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~ 120 (575)
.+...+..++..+++++|+.+|.+||.++|.. ..+++++|.+|.++|+|++|+.++..
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~------- 342 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDK------- 342 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-------
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH-------
Confidence 34455667788999999999999999999987 68999999999999999999998544
Q ss_pred HHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHH
Q 038048 121 LLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLA 199 (575)
Q Consensus 121 lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA 199 (575)
++.++|++..+++++|.+|..+|+|++|+.+|++|++++|++.. +.+|+
T Consensus 343 ------------------------------al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~ 392 (457)
T 1kt0_A 343 ------------------------------ALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIS 392 (457)
T ss_dssp ------------------------------HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHH
T ss_pred ------------------------------HHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 35678999999999999999999999999999999999999999 99999
Q ss_pred HHHHHcCCHHHHHHH-HHHHHH
Q 038048 200 ICLMHMNRVTEAKSL-LQAVKI 220 (575)
Q Consensus 200 ~iy~~qGr~eEAi~l-LekALe 220 (575)
.++..+|++++|... +.+++.
T Consensus 393 ~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 393 MCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999998754 444443
No 118
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.29 E-value=3.5e-11 Score=122.01 Aligned_cols=137 Identities=15% Similarity=0.106 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHhcCHH---------------------------HHHHHHHHHHHh------hHHHHH
Q 038048 88 DSALKDMAVVMKQLDRSDEAIEARSGRIE---------------------------EEIELLQNKLKN------IEEGIA 134 (575)
Q Consensus 88 ~~Al~nLA~iy~qqGrydEAie~~~gaLe---------------------------eAi~lL~~~L~l------~~~a~a 134 (575)
...++.+|.++...|++++|+.++..+++ +++..+...+.. ......
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 34566789999999999999998444433 333333333322 122223
Q ss_pred HHhHHHHHHHHhch--------hhHHhh------cCCcHHHHHHHHHHHHHcCC-----------------HHHHHHHHH
Q 038048 135 FAGVKTKMARSQGK--------KIQITV------EQEKSRILGNLAWAYMQQNN-----------------FEMAEQYYR 183 (575)
Q Consensus 135 ~~~nla~al~sqg~--------k~aL~L------~Pd~~~a~~nLG~aY~~qGr-----------------yeEAe~~yr 183 (575)
.+..++.++...|+ ..++.+ .+....+++++|.+|..+|+ +++|+.+|+
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 34555555555555 122333 34445577888888888888 888888888
Q ss_pred HHHHhCC------CCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 038048 184 KALSLGV------DMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGN 224 (575)
Q Consensus 184 kALeidP------dn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~ 224 (575)
+++++.+ .... +.++|.+|..+|++++|+.+|++++++.+.
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 255 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE 255 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 8877642 2223 667888888888888888888888877664
No 119
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.28 E-value=2.5e-11 Score=104.56 Aligned_cols=114 Identities=11% Similarity=0.139 Sum_probs=97.6
Q ss_pred cHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHH
Q 038048 55 SPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIA 134 (575)
Q Consensus 55 ~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a 134 (575)
..+...+..++..+++++|+.+|.+++..+|.+..+++++|.+|..+|++++|+..+..
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~--------------------- 68 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR--------------------- 68 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH---------------------
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHH---------------------
Confidence 34556677788999999999999999999999999999999999999999999987433
Q ss_pred HHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHH-HHHHHHHHHHc
Q 038048 135 FAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVD-----MNK-QCNLAICLMHM 205 (575)
Q Consensus 135 ~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPd-----n~~-~~NLA~iy~~q 205 (575)
++.++|++..+++++|.+|..+|++++|+.+|+++++++|+ +.. ...|..+....
T Consensus 69 ----------------al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~ 129 (137)
T 3q49_B 69 ----------------ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR 129 (137)
T ss_dssp ----------------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred ----------------HHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHH
Confidence 35668999999999999999999999999999999999998 444 55555554443
No 120
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.28 E-value=5.7e-11 Score=104.53 Aligned_cols=102 Identities=19% Similarity=0.145 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHH
Q 038048 88 DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAW 167 (575)
Q Consensus 88 ~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~ 167 (575)
...++.+|.++...|++++|+.++..+ +.++|++..+++++|.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~a-------------------------------------l~~~~~~~~~~~~~a~ 55 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQA-------------------------------------IELNPSNAIYYGNRSL 55 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH-------------------------------------HHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHH-------------------------------------HHhCCCChHHHHHHHH
Confidence 457889999999999999999985432 4568888999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 168 AYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 168 aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
+|..+|++++|+.+|+++++++|++.. ++++|.+|..+|++++|+.+|++++.+.|.+.
T Consensus 56 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~ 115 (166)
T 1a17_A 56 AYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK 115 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999999999999 99999999999999999999999999999764
No 121
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.28 E-value=4e-12 Score=126.62 Aligned_cols=131 Identities=10% Similarity=0.075 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHH
Q 038048 56 PYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAF 135 (575)
Q Consensus 56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~ 135 (575)
.+...+..++..+++++|+.+|.+++..+|.+..+++++|.+|..+|++++|+..+..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~---------------------- 63 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR---------------------- 63 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH----------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHH----------------------
Confidence 3445567778889999999999999999999999999999999999999999987433
Q ss_pred HhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HH---------------
Q 038048 136 AGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK----QC--------------- 196 (575)
Q Consensus 136 ~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~----~~--------------- 196 (575)
++.++|++..+++++|.+|..+|++++|+.+|+++++++|++.. ..
T Consensus 64 ---------------al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (281)
T 2c2l_A 64 ---------------ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSI 128 (281)
T ss_dssp ---------------HTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHH
T ss_pred ---------------HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999987631 11
Q ss_pred -------------HHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048 197 -------------NLAICLMHMNRVTEAKSLLQAVKISAGNR 225 (575)
Q Consensus 197 -------------NLA~iy~~qGr~eEAi~lLekALel~P~n 225 (575)
.|+.+ ..|++++|+..|+++++++|++
T Consensus 129 ~~~~~~~~~~i~~~l~~l--~~~~~~~A~~~~~~al~~~p~~ 168 (281)
T 2c2l_A 129 EERRIHQESELHSYLTRL--IAAERERELEECQRNHEGHEDD 168 (281)
T ss_dssp HHTCCCCCCHHHHHHHHH--HHHHHHHHHTTTSGGGTTTSCH
T ss_pred HHHHHhhhHHHHHHHHHH--HHHHHHHHHHHHHhhhccccch
Confidence 12222 3688889999999888888754
No 122
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.27 E-value=5.4e-11 Score=118.31 Aligned_cols=139 Identities=15% Similarity=0.016 Sum_probs=105.5
Q ss_pred ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch
Q 038048 69 DPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK 148 (575)
Q Consensus 69 d~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~ 148 (575)
++++|+.+|.++ |.+|..+|++++|+.++..+++..... .........+.+++.++...|+
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~a~~~~~lg~~~~~~g~ 92 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKA-----GNEDEAGNTYVEAYKCFKSGGN 92 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHHHCCC
Confidence 388888888876 678999999999999987766543211 1111112345566666666655
Q ss_pred --------hhHHhhcCCc------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HH-HHHHHHHHHHcC
Q 038048 149 --------KIQITVEQEK------SRILGNLAWAYMQQ-NNFEMAEQYYRKALSLGVDM------NK-QCNLAICLMHMN 206 (575)
Q Consensus 149 --------k~aL~L~Pd~------~~a~~nLG~aY~~q-GryeEAe~~yrkALeidPdn------~~-~~NLA~iy~~qG 206 (575)
..++.+.+.. ..++.++|.+|..+ |++++|+.+|++|+++.|+. .. +.++|.+|..+|
T Consensus 93 ~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g 172 (292)
T 1qqe_A 93 SVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDG 172 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhC
Confidence 2344444322 45899999999996 99999999999999998865 34 789999999999
Q ss_pred CHHHHHHHHHHHHHHcCCCC
Q 038048 207 RVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 207 r~eEAi~lLekALel~P~n~ 226 (575)
++++|+.+|++++++.|++.
T Consensus 173 ~~~~A~~~~~~al~~~~~~~ 192 (292)
T 1qqe_A 173 QYIEASDIYSKLIKSSMGNR 192 (292)
T ss_dssp CHHHHHHHHHHHHHTTSSCT
T ss_pred CHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999998764
No 123
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.27 E-value=2.2e-10 Score=114.42 Aligned_cols=169 Identities=12% Similarity=-0.007 Sum_probs=120.6
Q ss_pred hhhhHhhc-CCCCCcHHHHHHHHHH-------HcCCh-------HHHHHHHHHHHH-cCCCcHHHHHHHHHHHHHCCCHH
Q 038048 42 DIFHVIHK-VPSGDSPYVRAKHIQL-------IDKDP-------SRAVSLFWAAIN-AGDRVDSALKDMAVVMKQLDRSD 105 (575)
Q Consensus 42 e~y~~~~~-~ps~d~~yarA~~l~l-------~~kd~-------eeAi~lf~kAL~-l~p~~~~Al~nLA~iy~qqGryd 105 (575)
..|..... .|.....+...+.... ..|++ ++|+..|++|+. ++|++..++.++|.++...|+++
T Consensus 37 ~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~ 116 (308)
T 2ond_A 37 FAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYE 116 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHH
Confidence 35555444 3444434444444433 24775 899999999999 79999999999999999999999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhhHHHHH-HHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHH-cCCH
Q 038048 106 EAIEARSGRIEEEIELLQNKLKNIEEGIA-FAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQ-QNNF 175 (575)
Q Consensus 106 EAie~~~gaLeeAi~lL~~~L~l~~~a~a-~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~-qGry 175 (575)
+|+.++.++++... .... .+.+++..+...|+ ..++.+.|....++...+.+... +|++
T Consensus 117 ~A~~~~~~al~~~p-----------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 117 KVHSIYNRLLAIED-----------IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp HHHHHHHHHHTSSS-----------SCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCH
T ss_pred HHHHHHHHHHhccc-----------cCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCH
Confidence 99998766544211 1111 22233333333332 34566778777777666655433 7999
Q ss_pred HHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038048 176 EMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKIS 221 (575)
Q Consensus 176 eEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel 221 (575)
++|+.+|+++++++|++.. +.++|.++..+|++++|+.+|++++..
T Consensus 186 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 186 SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9999999999999999988 899999999999999999999999985
No 124
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.27 E-value=2.2e-11 Score=121.29 Aligned_cols=105 Identities=23% Similarity=0.158 Sum_probs=96.6
Q ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHH
Q 038048 85 DRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGN 164 (575)
Q Consensus 85 p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~n 164 (575)
|....+++.+|.+|...|++++|+.++.. ++.++|++..++++
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~-------------------------------------al~~~p~~~~~~~~ 43 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGR-------------------------------------AITRNPLVAVYYTN 43 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------------------------HHHHCSCCHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHH-------------------------------------HHHhCCccHHHHHH
Confidence 45567899999999999999999998544 25568999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 165 LAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 165 LG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
+|.+|..+|++++|+.+|++|++++|++.. ++++|.+|..+|++++|+.+|+++++++|++.
T Consensus 44 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 106 (281)
T 2c2l_A 44 RALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 106 (281)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence 999999999999999999999999999999 99999999999999999999999999999764
No 125
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.26 E-value=4.9e-11 Score=119.73 Aligned_cols=164 Identities=6% Similarity=-0.015 Sum_probs=92.6
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHCCCHHHHHHHH--------------------hcCHHHHHH
Q 038048 62 HIQLIDKDPSRAVSLFWAAINAGDRV-DSALKDMAVVMKQLDRSDEAIEAR--------------------SGRIEEEIE 120 (575)
Q Consensus 62 ~l~l~~kd~eeAi~lf~kAL~l~p~~-~~Al~nLA~iy~qqGrydEAie~~--------------------~gaLeeAi~ 120 (575)
+.+++.|++..|+..+++....+|.+ .++.+.++.+|..+|++++|+..+ .+..+.++.
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~ 86 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVA 86 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHH
Confidence 34567778888888777766666655 346677778888888888887651 122333444
Q ss_pred HHHHHHHh--hHHHHHHHhHHHHHHHHhch-hhHH--hhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-
Q 038048 121 LLQNKLKN--IEEGIAFAGVKTKMARSQGK-KIQI--TVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK- 194 (575)
Q Consensus 121 lL~~~L~l--~~~a~a~~~nla~al~sqg~-k~aL--~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~- 194 (575)
.++..+.. .+....++..++.++...|+ ..++ .-.|++..++.++|.+|..+|++++|+..|+++++++|++..
T Consensus 87 ~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~ 166 (291)
T 3mkr_A 87 ELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLT 166 (291)
T ss_dssp HHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTTCCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHH
Confidence 44443321 12233344455555555555 1111 112556666666666666666666666666666666666543
Q ss_pred HHHHH--HHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048 195 QCNLA--ICLMHMNRVTEAKSLLQAVKISAGNR 225 (575)
Q Consensus 195 ~~NLA--~iy~~qGr~eEAi~lLekALel~P~n 225 (575)
....+ .++...|++++|+.+|+++++..|++
T Consensus 167 ~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~ 199 (291)
T 3mkr_A 167 QLATAWVSLAAGGEKLQDAYYIFQEMADKCSPT 199 (291)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCc
Confidence 22212 33334466666666666666666654
No 126
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.26 E-value=4.3e-12 Score=130.27 Aligned_cols=129 Identities=16% Similarity=0.105 Sum_probs=58.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCcH-----------------HHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHH
Q 038048 60 AKHIQLIDKDPSRAVSLFWAAINAGDRVD-----------------SALKDMAVVMKQLDRSDEAIEARSGRIEEEIELL 122 (575)
Q Consensus 60 A~~l~l~~kd~eeAi~lf~kAL~l~p~~~-----------------~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL 122 (575)
.+..++..+++++|+.+|.+++...|.+. .+++++|.+|..+|+|++|+.++..
T Consensus 185 ~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~--------- 255 (338)
T 2if4_A 185 DGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI--------- 255 (338)
T ss_dssp HHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH---------
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH---------
Confidence 34444556788888888888888777654 2566666666666666666665322
Q ss_pred HHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHH
Q 038048 123 QNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAIC 201 (575)
Q Consensus 123 ~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~i 201 (575)
++.++|++..+++++|.+|..+|+|++|+.+|++|++++|++.. +.+|+.+
T Consensus 256 ----------------------------al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l 307 (338)
T 2if4_A 256 ----------------------------VLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRAL 307 (338)
T ss_dssp ----------------------------HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------
T ss_pred ----------------------------HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 23445666666666666666666666666666666666666666 6666665
Q ss_pred -HHHcCCHHHHHHHHHHHHHHcCCC
Q 038048 202 -LMHMNRVTEAKSLLQAVKISAGNR 225 (575)
Q Consensus 202 -y~~qGr~eEAi~lLekALel~P~n 225 (575)
....+..+++..+|.+++...|++
T Consensus 308 ~~~~~~~~~~a~~~~~~~l~~~p~~ 332 (338)
T 2if4_A 308 AEQEKALYQKQKEMYKGIFKGKDEG 332 (338)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCC
Confidence 334555666666666666666544
No 127
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.26 E-value=6.2e-11 Score=117.30 Aligned_cols=64 Identities=13% Similarity=0.137 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HH-HHHHHHHHHHcCCHHHH-HHHHHHHHHHcC
Q 038048 160 RILGNLAWAYMQQNNFEMAEQYYRKALSLGVDM------NK-QCNLAICLMHMNRVTEA-KSLLQAVKISAG 223 (575)
Q Consensus 160 ~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn------~~-~~NLA~iy~~qGr~eEA-i~lLekALel~P 223 (575)
.+++++|.+|..+|+|++|+.+|++|+++.++. .. ++++|.+|..+|++++| ..+|++++.+..
T Consensus 197 ~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~ 268 (293)
T 2qfc_A 197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999986431 34 88999999999999999 888999998754
No 128
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.26 E-value=6.8e-11 Score=113.64 Aligned_cols=164 Identities=16% Similarity=0.118 Sum_probs=120.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHH
Q 038048 57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDRVD----SALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEG 132 (575)
Q Consensus 57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~----~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a 132 (575)
+...+......+++++|+.+|++++..+|.+. .++..+|.+|...|++++|+.++..+++.....- .....
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~~~~ 82 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG-----DQLGE 82 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-----CHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc-----ccHHH
Confidence 34456777889999999999999999998874 6788999999999999999999766655432210 01111
Q ss_pred HHHHhHHHHHHHHhch--------hhHHhhcC------CcHHHHHHHHHHHHHcCC--------------------HHHH
Q 038048 133 IAFAGVKTKMARSQGK--------KIQITVEQ------EKSRILGNLAWAYMQQNN--------------------FEMA 178 (575)
Q Consensus 133 ~a~~~nla~al~sqg~--------k~aL~L~P------d~~~a~~nLG~aY~~qGr--------------------yeEA 178 (575)
...+..++..+...|+ ..++.+.+ ....++.++|.+|..+|+ +++|
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 1233344444444444 11222222 124489999999999999 9999
Q ss_pred HHHHHHHHHhC------CCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048 179 EQYYRKALSLG------VDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNR 225 (575)
Q Consensus 179 e~~yrkALeid------Pdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n 225 (575)
+.+|++++.+. +.... +.++|.+|..+|++++|+.++++++++.+..
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 216 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 216 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 99999999873 22334 7899999999999999999999999987643
No 129
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=7.3e-11 Score=101.84 Aligned_cols=112 Identities=14% Similarity=0.038 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHH
Q 038048 56 PYVRAKHIQLIDKDPSRAVSLFWAAINAGDRV---DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEG 132 (575)
Q Consensus 56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~---~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a 132 (575)
.+...+..++..+++++|+.+|++++..+|+. ..+++++|.+|..+|++++|+.++..
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~------------------- 90 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASK------------------- 90 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHH-------------------
Confidence 34455667788899999999999999999987 78999999999999999999988433
Q ss_pred HHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH
Q 038048 133 IAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMH 204 (575)
Q Consensus 133 ~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~ 204 (575)
++.++|++..+++++|.+|..+|++++|+.+|+++++++|++.. +..++.+...
T Consensus 91 ------------------~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 91 ------------------AIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp ------------------HHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred ------------------HHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 24568888999999999999999999999999999999999998 7777776543
No 130
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.25 E-value=4e-11 Score=118.70 Aligned_cols=130 Identities=12% Similarity=0.042 Sum_probs=96.4
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHh
Q 038048 64 QLIDKDPSRAVSLFWAAINAGDRV------DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAG 137 (575)
Q Consensus 64 ~l~~kd~eeAi~lf~kAL~l~p~~------~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~ 137 (575)
+...+++++|+.+|++++...... ..++++||.+|..+|++++|+.++..+++.....
T Consensus 125 ~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~---------------- 188 (293)
T 3u3w_A 125 VLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL---------------- 188 (293)
T ss_dssp HTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS----------------
T ss_pred HHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc----------------
Confidence 334457888888888888753321 2367888888888888888888755543311000
Q ss_pred HHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HH-HHHHHHHHHHcCC-HH
Q 038048 138 VKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDM------NK-QCNLAICLMHMNR-VT 209 (575)
Q Consensus 138 nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn------~~-~~NLA~iy~~qGr-~e 209 (575)
....+....+++|+|.+|..+|+|++|+.+|++|+++.+.. .. ++++|.+|..+|+ ++
T Consensus 189 --------------~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 254 (293)
T 3u3w_A 189 --------------HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEA 254 (293)
T ss_dssp --------------SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHH
T ss_pred --------------ccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHH
Confidence 00122334589999999999999999999999999987544 45 8899999999995 69
Q ss_pred HHHHHHHHHHHHcC
Q 038048 210 EAKSLLQAVKISAG 223 (575)
Q Consensus 210 EAi~lLekALel~P 223 (575)
+|+.+|++++.+..
T Consensus 255 ~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 255 EIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999754
No 131
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.24 E-value=1.4e-10 Score=118.12 Aligned_cols=158 Identities=11% Similarity=-0.055 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCC-------CcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHh
Q 038048 56 PYVRAKHIQLIDKDPSRAVSLFWAAINAGD-------RVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKN 128 (575)
Q Consensus 56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l~p-------~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l 128 (575)
.+...+.++...+++++|+.+|.+|+.+.+ ....++++||.+|..+|++++|+.++..+++.....- .
T Consensus 145 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-----~ 219 (383)
T 3ulq_A 145 FFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK-----Q 219 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----C
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC-----C
Confidence 345566777889999999999999998733 2345899999999999999999999777665433221 0
Q ss_pred hHHHHHHHhHHHHHHHHhch--------hhHHh-----hc-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----
Q 038048 129 IEEGIAFAGVKTKMARSQGK--------KIQIT-----VE-QEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLG----- 189 (575)
Q Consensus 129 ~~~a~a~~~nla~al~sqg~--------k~aL~-----L~-Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeid----- 189 (575)
.......+.+++.++...|+ ..++. .+ |....++++||.+|..+|++++|+.+|++|+++.
T Consensus 220 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 299 (383)
T 3ulq_A 220 PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGD 299 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC
Confidence 11111345566666666666 22333 24 7778899999999999999999999999999984
Q ss_pred CCCHH-HHHHHHHHHHcCC---HHHHHHHHHHH
Q 038048 190 VDMNK-QCNLAICLMHMNR---VTEAKSLLQAV 218 (575)
Q Consensus 190 Pdn~~-~~NLA~iy~~qGr---~eEAi~lLekA 218 (575)
|.... ..+||.+|...|+ +++|+.+++++
T Consensus 300 ~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 300 VIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK 332 (383)
T ss_dssp HHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 33333 4567777777777 66666666654
No 132
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.23 E-value=2.4e-10 Score=97.29 Aligned_cols=112 Identities=10% Similarity=-0.093 Sum_probs=93.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCcH---HHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHH
Q 038048 58 VRAKHIQLIDKDPSRAVSLFWAAINAGDRVD---SALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIA 134 (575)
Q Consensus 58 arA~~l~l~~kd~eeAi~lf~kAL~l~p~~~---~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a 134 (575)
...+...+..+++++|+.+|.+++..+|++. .+++.+|.+|..+|++++|+..+..
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~--------------------- 64 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRD--------------------- 64 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH---------------------
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHH---------------------
Confidence 3445667889999999999999999999887 7999999999999999999998533
Q ss_pred HHhHHHHHHHHhchhhHHhhcCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcC
Q 038048 135 FAGVKTKMARSQGKKIQITVEQEK---SRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMN 206 (575)
Q Consensus 135 ~~~nla~al~sqg~k~aL~L~Pd~---~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qG 206 (575)
++...|++ ..+++++|.+|..+|++++|+.+|+++++..|++.. ...+..+-...+
T Consensus 65 ----------------~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~ 124 (129)
T 2xev_A 65 ----------------LVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRL 124 (129)
T ss_dssp ----------------HHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC-
T ss_pred ----------------HHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence 24457777 789999999999999999999999999999999987 555544444333
No 133
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.23 E-value=7.3e-11 Score=107.56 Aligned_cols=138 Identities=14% Similarity=-0.010 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhh
Q 038048 56 PYVRAKHIQLIDKDPSRAVSLFWAAINA------GDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNI 129 (575)
Q Consensus 56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l------~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~ 129 (575)
.+...+.++...+++++|+.+|++++.. .+....+++++|.+|..+|++++|+.++..+++...
T Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~---------- 97 (203)
T 3gw4_A 28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLA---------- 97 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH----------
Confidence 4455667778899999999999999983 334456899999999999999999998554432110
Q ss_pred HHHHHHHhHHHHHHHHhchhhHHhhcC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHH-----HHHHHHH
Q 038048 130 EEGIAFAGVKTKMARSQGKKIQITVEQ-EKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVD--MNK-----QCNLAIC 201 (575)
Q Consensus 130 ~~a~a~~~nla~al~sqg~k~aL~L~P-d~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPd--n~~-----~~NLA~i 201 (575)
..+ -++ ....+++++|.+|..+|++++|+.+|++++++.+. +.. +.+||.+
T Consensus 98 ---------------~~~------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 156 (203)
T 3gw4_A 98 ---------------SLP------EDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDL 156 (203)
T ss_dssp ---------------HSC------CCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---------------HcC------ccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 000 001 12348899999999999999999999999987432 221 4799999
Q ss_pred HHHcCCHHHHHHHHHHHHHHcCC
Q 038048 202 LMHMNRVTEAKSLLQAVKISAGN 224 (575)
Q Consensus 202 y~~qGr~eEAi~lLekALel~P~ 224 (575)
|..+|++++|+.++++++++...
T Consensus 157 ~~~~g~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 157 AQQEKNLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHCcCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998653
No 134
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.22 E-value=3.5e-11 Score=113.36 Aligned_cols=108 Identities=13% Similarity=0.089 Sum_probs=91.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCC-------cH-----HHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHH
Q 038048 57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDR-------VD-----SALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQN 124 (575)
Q Consensus 57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~-------~~-----~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~ 124 (575)
+...+..++..|++++|+..|++||+++|. .. .+|+|+|.++..+|+|++|+..+..+++. +
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l----~-- 87 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY----F-- 87 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----H--
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----h--
Confidence 344566778889999999999999999998 43 39999999999999999999996554331 1
Q ss_pred HHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048 125 KLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRIL----GNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK 194 (575)
Q Consensus 125 ~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~----~nLG~aY~~qGryeEAe~~yrkALeidPdn~~ 194 (575)
...+.++|++..+| +++|.+|..+|++++|+.+|++||+++|++..
T Consensus 88 ------------------------n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 88 ------------------------NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp ------------------------HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred ------------------------hccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 12356799999999 99999999999999999999999999998876
No 135
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.22 E-value=1.2e-11 Score=106.18 Aligned_cols=70 Identities=11% Similarity=0.156 Sum_probs=39.0
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048 156 QEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNR 225 (575)
Q Consensus 156 Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n 225 (575)
|++..++++||.+|..+|+|++|+.+|+++++++|++.. +++||.+|..+|++++|+.+|++++...|++
T Consensus 24 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 94 (117)
T 3k9i_A 24 KDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDD 94 (117)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 344445555555555555555555555555555555555 5555555555555555555555555555543
No 136
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.22 E-value=6.4e-11 Score=123.72 Aligned_cols=113 Identities=11% Similarity=0.003 Sum_probs=84.6
Q ss_pred HHHHHHHHHCCCHHHHHHHHhcCHHHHHHH-HHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHH
Q 038048 92 KDMAVVMKQLDRSDEAIEARSGRIEEEIEL-LQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYM 170 (575)
Q Consensus 92 ~nLA~iy~qqGrydEAie~~~gaLeeAi~l-L~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~ 170 (575)
..+|.+|...|+|++|+..+..+++..... ...... ....++|....+++++|.+|.
T Consensus 227 ~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 227 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDA----------------------DGAKLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHH----------------------HHGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChH----------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 356777888888888887777666532221 000000 012335556678899999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 171 QQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 171 ~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
.+|+|++|+.+|++||+++|++.. ++++|.+|..+|++++|+..|+++++++|++.
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~ 341 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDK 341 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999999988 88999999999999999999999999988754
No 137
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.22 E-value=1.9e-11 Score=115.06 Aligned_cols=97 Identities=9% Similarity=0.011 Sum_probs=76.6
Q ss_pred ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch
Q 038048 69 DPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK 148 (575)
Q Consensus 69 d~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~ 148 (575)
.+++|+..|+++++++|+++.+++++|.++..+++++.++...
T Consensus 17 ~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al------------------------------------- 59 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAK------------------------------------- 59 (158)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHH-------------------------------------
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhH-------------------------------------
Confidence 4688999999999999999999999999999888887666530
Q ss_pred hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcC-----------CHHHHHHHHH
Q 038048 149 KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMN-----------RVTEAKSLLQ 216 (575)
Q Consensus 149 k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qG-----------r~eEAi~lLe 216 (575)
+.+++|+..|++||+++|++.. ++|||++|..+| ++++|+.+|+
T Consensus 60 ------------------------~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~ 115 (158)
T 1zu2_A 60 ------------------------QMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQ 115 (158)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred ------------------------hHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHH
Confidence 1267777788888888888777 777888877764 7888888888
Q ss_pred HHHHHcCCCC
Q 038048 217 AVKISAGNRQ 226 (575)
Q Consensus 217 kALel~P~n~ 226 (575)
+|++++|++.
T Consensus 116 kAl~l~P~~~ 125 (158)
T 1zu2_A 116 QAVDEQPDNT 125 (158)
T ss_dssp HHHHHCTTCH
T ss_pred HHHHhCCCCH
Confidence 8888888653
No 138
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.21 E-value=2.6e-10 Score=100.74 Aligned_cols=128 Identities=13% Similarity=0.103 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch--------hhHHhhcCCcH
Q 038048 88 DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK--------KIQITVEQEKS 159 (575)
Q Consensus 88 ~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~ 159 (575)
..+++.+|.++...|++++|+..+...++... .....+..++.++...|+ ..++.+.|++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 76 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADA-----------FDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNV 76 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-----------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-----------cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Confidence 45788899999999999999999777654311 111222233333333333 24567789999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 160 RILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 160 ~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
.++.++|.+|..+|++++|+.+|++++.+.|++.. +.++|.+|..+|++++|+.+|++++...|.+.
T Consensus 77 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 144 (186)
T 3as5_A 77 KVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEG 144 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccch
Confidence 99999999999999999999999999999999999 99999999999999999999999999988754
No 139
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.20 E-value=2.1e-11 Score=104.55 Aligned_cols=44 Identities=9% Similarity=0.024 Sum_probs=25.7
Q ss_pred HHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048 151 QITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK 194 (575)
Q Consensus 151 aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~ 194 (575)
++.++|++..+++++|.+|..+|++++|+.+|++++++.|++..
T Consensus 53 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 53 GVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDET 96 (117)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHH
T ss_pred HHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence 44555555555556666666666666666666666655555554
No 140
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.20 E-value=1.5e-10 Score=97.03 Aligned_cols=113 Identities=14% Similarity=0.118 Sum_probs=94.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHH
Q 038048 57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFA 136 (575)
Q Consensus 57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~ 136 (575)
+...+..+...+++++|+.+|.+++..+|....+++++|.+|...|++++|+.++...++
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-------------------- 66 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE-------------------- 66 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--------------------
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHh--------------------
Confidence 445566778899999999999999999999999999999999999999999998544322
Q ss_pred hHHHHHHHHhchhhHHhhcCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCC
Q 038048 137 GVKTKMARSQGKKIQITVEQEK-------SRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNR 207 (575)
Q Consensus 137 ~nla~al~sqg~k~aL~L~Pd~-------~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr 207 (575)
+.|++ ..+++++|.+|..+|++++|+.+|++++++.|+ .. ...++.++...++
T Consensus 67 -----------------~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 67 -----------------VGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEKILKE 127 (131)
T ss_dssp -----------------HHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHH
T ss_pred -----------------hccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHH
Confidence 12222 568999999999999999999999999999994 65 7888887765443
No 141
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.19 E-value=3.3e-10 Score=112.86 Aligned_cols=131 Identities=11% Similarity=-0.026 Sum_probs=108.5
Q ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch--------hhHHhhc
Q 038048 84 GDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK--------KIQITVE 155 (575)
Q Consensus 84 ~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~--------k~aL~L~ 155 (575)
-|....+++.+|..+.+.|++++|+.++..+++. .+.....+..++.++...|+ ..++..+
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----------~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~ 181 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQL-----------SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD 181 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh-----------CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh
Confidence 3788889999999999999999999986665443 22333444555566665555 2346668
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048 156 QEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNR 225 (575)
Q Consensus 156 Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n 225 (575)
|+....+..++..+..+++.++|+..|+++++++|++.. +++||.+|..+|++++|+..|++++..+|++
T Consensus 182 p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~ 252 (287)
T 3qou_A 182 QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA 252 (287)
T ss_dssp CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence 877778888888899999999999999999999999999 9999999999999999999999999999976
No 142
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.19 E-value=3.8e-10 Score=112.62 Aligned_cols=145 Identities=10% Similarity=0.031 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-------CCCH-------HHHHHHHhcCHHHHHHHHHHHHH-hhHHHHHH
Q 038048 71 SRAVSLFWAAINAGDRVDSALKDMAVVMKQ-------LDRS-------DEAIEARSGRIEEEIELLQNKLK-NIEEGIAF 135 (575)
Q Consensus 71 eeAi~lf~kAL~l~p~~~~Al~nLA~iy~q-------qGry-------dEAie~~~gaLeeAi~lL~~~L~-l~~~a~a~ 135 (575)
++|+..|++++..+|.++.+|+++|.++.. .|++ ++|+.+ +.+++. ..+.....
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~-----------~~rAl~~~~p~~~~~ 101 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI-----------YERAISTLLKKNMLL 101 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH-----------HHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHH-----------HHHHHHHhCcccHHH
Confidence 789999999999999999999999999874 5876 555555 444444 23444445
Q ss_pred HhHHHHHHHHhch--------hhHHhhcCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH-
Q 038048 136 AGVKTKMARSQGK--------KIQITVEQEKSR-ILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMH- 204 (575)
Q Consensus 136 ~~nla~al~sqg~--------k~aL~L~Pd~~~-a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~- 204 (575)
+.+++..+...|+ +.++.+.|.+.. +|.++|.++..+|++++|+..|++|+++.|.... +...|.+...
T Consensus 102 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~ 181 (308)
T 2ond_A 102 YFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC 181 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 5566666665555 456788998886 9999999999999999999999999999998877 6666665433
Q ss_pred cCCHHHHHHHHHHHHHHcCCCC
Q 038048 205 MNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 205 qGr~eEAi~lLekALel~P~n~ 226 (575)
+|++++|+.+|+++++..|++.
T Consensus 182 ~~~~~~A~~~~~~al~~~p~~~ 203 (308)
T 2ond_A 182 SKDKSVAFKIFELGLKKYGDIP 203 (308)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCH
T ss_pred cCCHHHHHHHHHHHHHhCCCcH
Confidence 7999999999999999999764
No 143
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.19 E-value=4.4e-11 Score=130.56 Aligned_cols=129 Identities=12% Similarity=0.090 Sum_probs=105.2
Q ss_pred HHcCChHHHHHHHHHHHHc-----CCCc---HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHH
Q 038048 65 LIDKDPSRAVSLFWAAINA-----GDRV---DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFA 136 (575)
Q Consensus 65 l~~kd~eeAi~lf~kAL~l-----~p~~---~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~ 136 (575)
..+|++++|+.+|+++|++ ++++ ..++++||.+|..+|+|++|+.++.++++....+++..
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~----------- 388 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN----------- 388 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT-----------
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC-----------
Confidence 4578999999999999974 4444 45799999999999999999999776655433322222
Q ss_pred hHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH----HHHHHHHHHHcCC
Q 038048 137 GVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSL-----GVDMNK----QCNLAICLMHMNR 207 (575)
Q Consensus 137 ~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALei-----dPdn~~----~~NLA~iy~~qGr 207 (575)
.|+-...++|||.+|..+|+|++|+.+|++||+| -|+++. ..+|+.++.++|+
T Consensus 389 ------------------Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 389 ------------------NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp ------------------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH
Confidence 3444558999999999999999999999999997 377764 5689999999999
Q ss_pred HHHHHHHHHHHHHHc
Q 038048 208 VTEAKSLLQAVKISA 222 (575)
Q Consensus 208 ~eEAi~lLekALel~ 222 (575)
+++|+.+|.++.+..
T Consensus 451 ~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 451 FRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987743
No 144
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.16 E-value=6.8e-10 Score=105.60 Aligned_cols=151 Identities=11% Similarity=0.000 Sum_probs=113.0
Q ss_pred cHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCC----CHHHHHHHHhcCHHHHHHHHHHHHHhhH
Q 038048 55 SPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLD----RSDEAIEARSGRIEEEIELLQNKLKNIE 130 (575)
Q Consensus 55 ~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqG----rydEAie~~~gaLeeAi~lL~~~L~l~~ 130 (575)
..+...+.++...+++++|+.+|+++++. .++.++++||.+|.. + ++++|+.++..+.+...
T Consensus 19 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g~----------- 84 (212)
T 3rjv_A 19 RAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAGS----------- 84 (212)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTTC-----------
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCCC-----------
Confidence 44556777778899999999999999886 468899999999998 7 89999999766543210
Q ss_pred HHHHHHhHHHHHHHH----hch--------hhHHhhcC--CcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCC
Q 038048 131 EGIAFAGVKTKMARS----QGK--------KIQITVEQ--EKSRILGNLAWAYMQ----QNNFEMAEQYYRKALSLGVDM 192 (575)
Q Consensus 131 ~a~a~~~nla~al~s----qg~--------k~aL~L~P--d~~~a~~nLG~aY~~----qGryeEAe~~yrkALeidPdn 192 (575)
.....+++.++.. .++ +.++...+ +.+.++++||.+|.. .+++++|+.+|++|+++ |.+
T Consensus 85 --~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~ 161 (212)
T 3rjv_A 85 --KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRT 161 (212)
T ss_dssp --HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCT
T ss_pred --HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCC
Confidence 1112233333321 111 12334444 237899999999999 89999999999999999 666
Q ss_pred HH-HHHHHHHHHHc-C-----CHHHHHHHHHHHHHHc
Q 038048 193 NK-QCNLAICLMHM-N-----RVTEAKSLLQAVKISA 222 (575)
Q Consensus 193 ~~-~~NLA~iy~~q-G-----r~eEAi~lLekALel~ 222 (575)
.. +++||.+|... | ++++|+.+|+++++..
T Consensus 162 ~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 162 GYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp THHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 77 99999999875 3 8999999999999873
No 145
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.16 E-value=2.2e-10 Score=119.75 Aligned_cols=81 Identities=9% Similarity=0.055 Sum_probs=70.6
Q ss_pred HHHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH
Q 038048 134 AFAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMH 204 (575)
Q Consensus 134 a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~ 204 (575)
..+.+++.++...++ ..++.++|++..+++++|.+|..+|++++|+.+|++|++++|++.. +.+|+.++..
T Consensus 274 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~ 353 (370)
T 1ihg_A 274 SCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQK 353 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 445566666666555 4578889999999999999999999999999999999999999999 9999999999
Q ss_pred cCCHHHHHHH
Q 038048 205 MNRVTEAKSL 214 (575)
Q Consensus 205 qGr~eEAi~l 214 (575)
++++++|...
T Consensus 354 ~~~~~~a~k~ 363 (370)
T 1ihg_A 354 IKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 9999988754
No 146
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.16 E-value=9.9e-10 Score=112.12 Aligned_cols=157 Identities=11% Similarity=0.045 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-------cHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHh
Q 038048 56 PYVRAKHIQLIDKDPSRAVSLFWAAINAGDR-------VDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKN 128 (575)
Q Consensus 56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~-------~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l 128 (575)
.+...+.++...++++.|+.+|.+|+...+. ...++++||.+|..+|++++|++++..+++.....- .
T Consensus 143 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~-----~ 217 (378)
T 3q15_A 143 FHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ-----N 217 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----C
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC-----C
Confidence 3445666778899999999999999986332 245789999999999999999999777665432210 0
Q ss_pred hHHHHHHHhHHHHHHHHhch--------hhHHh-----hcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----
Q 038048 129 IEEGIAFAGVKTKMARSQGK--------KIQIT-----VEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVD---- 191 (575)
Q Consensus 129 ~~~a~a~~~nla~al~sqg~--------k~aL~-----L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPd---- 191 (575)
.......+.+++.++...|+ ..++. .+|....++++||.+|..+|++++|+.+|++++++.+.
T Consensus 218 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 297 (378)
T 3q15_A 218 DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHK 297 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCS
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 01111344566666666555 22344 46777889999999999999999999999999998543
Q ss_pred -CHH-HHHHHHHHHHcCC---HHHHHHHHHH
Q 038048 192 -MNK-QCNLAICLMHMNR---VTEAKSLLQA 217 (575)
Q Consensus 192 -n~~-~~NLA~iy~~qGr---~eEAi~lLek 217 (575)
... ...|+.+|...|+ +.+|+.++++
T Consensus 298 ~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~ 328 (378)
T 3q15_A 298 FYKELFLFLQAVYKETVDERKIHDLLSYFEK 328 (378)
T ss_dssp CHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 222 4445555555555 5555555443
No 147
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.15 E-value=1.4e-09 Score=107.61 Aligned_cols=132 Identities=12% Similarity=0.041 Sum_probs=104.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHH
Q 038048 59 RAKHIQLIDKDPSRAVSLFWAAINAGDRVD------SALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEG 132 (575)
Q Consensus 59 rA~~l~l~~kd~eeAi~lf~kAL~l~p~~~------~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a 132 (575)
.....++..+++++|+.+|.+++...+... ..++.+|.+|..+|++++|+..+..+++. .
T Consensus 80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----------~--- 145 (293)
T 2qfc_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQ-----------Q--- 145 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTT-----------C---
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-----------H---
Confidence 344556788999999999999999877643 34678999999999999999985443210 0
Q ss_pred HHHHhHHHHHHHHhchhhHHhh-cC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCH----H-HHHHHHHH
Q 038048 133 IAFAGVKTKMARSQGKKIQITV-EQ-EKSRILGNLAWAYMQQNNFEMAEQYYRKAL---SLGVDMN----K-QCNLAICL 202 (575)
Q Consensus 133 ~a~~~nla~al~sqg~k~aL~L-~P-d~~~a~~nLG~aY~~qGryeEAe~~yrkAL---eidPdn~----~-~~NLA~iy 202 (575)
... ++ ....+++++|.+|..+|+|++|+.+|++|+ +..|++. . ++|+|.+|
T Consensus 146 -------------------~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y 206 (293)
T 2qfc_A 146 -------------------LTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKAL 206 (293)
T ss_dssp -------------------CCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred -------------------hcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHH
Confidence 000 11 114589999999999999999999999999 5566653 4 78999999
Q ss_pred HHcCCHHHHHHHHHHHHHHcC
Q 038048 203 MHMNRVTEAKSLLQAVKISAG 223 (575)
Q Consensus 203 ~~qGr~eEAi~lLekALel~P 223 (575)
..+|++++|+.++++++++.+
T Consensus 207 ~~~~~y~~Al~~~~kal~~~~ 227 (293)
T 2qfc_A 207 YLDSRYEESLYQVNKAIEISC 227 (293)
T ss_dssp HHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999864
No 148
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.14 E-value=5.8e-10 Score=103.07 Aligned_cols=97 Identities=18% Similarity=0.162 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHH
Q 038048 90 ALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAY 169 (575)
Q Consensus 90 Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY 169 (575)
.++++|.++...|++++|+..+..+ ++| +..+++++|.+|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a---------------------------------------~~~-~~~~~~~lg~~~ 47 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV---------------------------------------QDP-HSRICFNIGCMY 47 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS---------------------------------------SSC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH---------------------------------------cCC-ChHHHHHHHHHH
Confidence 5678999999999999999986553 223 456999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 170 MQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 170 ~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
..+|++++|+.+|+++++++|++.. ++++|.+|..+|++++|+.+|++++++.|.+.
T Consensus 48 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~ 105 (213)
T 1hh8_A 48 TILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ 105 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCS
T ss_pred HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcc
Confidence 9999999999999999999999999 99999999999999999999999999988764
No 149
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.11 E-value=8.9e-10 Score=91.73 Aligned_cols=101 Identities=23% Similarity=0.236 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHH
Q 038048 89 SALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWA 168 (575)
Q Consensus 89 ~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~a 168 (575)
.+++.+|.+|...|++++|+.++... +...|.+..+++.+|.+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~-------------------------------------~~~~~~~~~~~~~~a~~ 44 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKA-------------------------------------LELDPRSAEAWYNLGNA 44 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHH-------------------------------------HHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHH-------------------------------------HHcCCcchhHHHHHHHH
Confidence 46788999999999999999884332 34467788899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 169 YMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 169 Y~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
|...|++++|+.+|++++.+.|++.. ++++|.+|..+|++++|+.++++++...|.+.
T Consensus 45 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 103 (136)
T 2fo7_A 45 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA 103 (136)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh
Confidence 99999999999999999999999998 99999999999999999999999999988653
No 150
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.11 E-value=3.4e-09 Score=106.90 Aligned_cols=159 Identities=13% Similarity=0.031 Sum_probs=116.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCcH-----HHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHH
Q 038048 61 KHIQLIDKDPSRAVSLFWAAINAGDRVD-----SALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAF 135 (575)
Q Consensus 61 ~~l~l~~kd~eeAi~lf~kAL~l~p~~~-----~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~ 135 (575)
+.+.+..+++++|+.++++++...|... .++.++|.+|...|++++|+.++..++......-. .......
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~~~~ 95 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV-----WHYALWS 95 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-----HHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCc-----HHHHHHH
Confidence 3556788999999999999999876542 26889999999999999999997666554332100 0001112
Q ss_pred HhHHHHHHHHhch--------hhHHhhc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HH
Q 038048 136 AGVKTKMARSQGK--------KIQITVE--------QEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDM-----NK 194 (575)
Q Consensus 136 ~~nla~al~sqg~--------k~aL~L~--------Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn-----~~ 194 (575)
..+++..+...|+ ..++.+. |....++.++|.+|..+|++++|+.+|++++++.+.. ..
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 2334444444444 1122221 3345688999999999999999999999999998753 23
Q ss_pred -HHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 038048 195 -QCNLAICLMHMNRVTEAKSLLQAVKISAGN 224 (575)
Q Consensus 195 -~~NLA~iy~~qGr~eEAi~lLekALel~P~ 224 (575)
+.++|.++..+|++++|+.++++++.+.+.
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~ 206 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGN 206 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 779999999999999999999999988543
No 151
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.10 E-value=3.8e-10 Score=92.18 Aligned_cols=100 Identities=17% Similarity=0.066 Sum_probs=88.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHH
Q 038048 57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFA 136 (575)
Q Consensus 57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~ 136 (575)
+...+..+...+++++|+.+|++++..+|....+++++|.+|..+|++++|+.++..
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~----------------------- 65 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNY----------------------- 65 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH-----------------------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHH-----------------------
Confidence 344556677889999999999999999999999999999999999999999988433
Q ss_pred hHHHHHHHHhchhhHHhhcCC--cHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCH
Q 038048 137 GVKTKMARSQGKKIQITVEQE--KSRILGNLAWAYMQQ-NNFEMAEQYYRKALSLGVDMN 193 (575)
Q Consensus 137 ~nla~al~sqg~k~aL~L~Pd--~~~a~~nLG~aY~~q-GryeEAe~~yrkALeidPdn~ 193 (575)
++.+.|. ...+++++|.+|..+ |++++|+.+|++++...|++.
T Consensus 66 --------------a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 66 --------------VINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp --------------HHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred --------------HHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 2456788 889999999999999 999999999999999999764
No 152
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.10 E-value=4.8e-10 Score=94.34 Aligned_cols=72 Identities=14% Similarity=0.065 Sum_probs=67.1
Q ss_pred cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 155 EQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 155 ~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
+|+++.+++++|.+|..+|++++|+.+|+++++++|++.. +++||.+|..+|++++|+..|++++++.|...
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~ 75 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEG 75 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCC
Confidence 6889999999999999999999999999999999999999 99999999999999999999999999987543
No 153
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.09 E-value=7.7e-10 Score=100.73 Aligned_cols=128 Identities=15% Similarity=0.094 Sum_probs=97.2
Q ss_pred HHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHH
Q 038048 65 LIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMAR 144 (575)
Q Consensus 65 l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~ 144 (575)
+..|++++|+.+++...........+++.+|.+|...|++++|+.++..+++....
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~------------------------ 58 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQK------------------------ 58 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT------------------------
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH------------------------
Confidence 56789999999655444433356779999999999999999999986554332110
Q ss_pred HhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCH----H-HHHHHHHHHHcCCHHHHHHHHH
Q 038048 145 SQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSL---GVDMN----K-QCNLAICLMHMNRVTEAKSLLQ 216 (575)
Q Consensus 145 sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALei---dPdn~----~-~~NLA~iy~~qGr~eEAi~lLe 216 (575)
....+....+++++|.+|..+|++++|+.+|++++++ .+++. . ++++|.+|..+|++++|+.+++
T Consensus 59 -------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 131 (203)
T 3gw4_A 59 -------SGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYE 131 (203)
T ss_dssp -------TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred -------cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 0112233458999999999999999999999999999 55432 3 7899999999999999999999
Q ss_pred HHHHHcC
Q 038048 217 AVKISAG 223 (575)
Q Consensus 217 kALel~P 223 (575)
+++.+.+
T Consensus 132 ~al~~~~ 138 (203)
T 3gw4_A 132 KSLVYAQ 138 (203)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998754
No 154
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.09 E-value=5.3e-11 Score=128.32 Aligned_cols=101 Identities=19% Similarity=0.149 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHH
Q 038048 89 SALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWA 168 (575)
Q Consensus 89 ~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~a 168 (575)
.+++++|.+|.++|++++|++++.. ++.++|++..+++++|.+
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~-------------------------------------Al~~~p~~~~~~~~lg~~ 49 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQ-------------------------------------AIELNPSNAIYYGNRSLA 49 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHH-------------------------------------HHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHH-------------------------------------HHHhCCccHHHHHHHHHH
Confidence 4567789999999999999998544 245689999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 169 YMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 169 Y~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
|..+|+|++|+.+|++|++++|++.. +++||.+|..+|++++|+.+|+++++++|++.
T Consensus 50 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 108 (477)
T 1wao_1 50 YLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK 108 (477)
T ss_dssp HHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCT
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 99999999999999999999999999 99999999999999999999999999999876
No 155
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.08 E-value=1.4e-09 Score=104.51 Aligned_cols=134 Identities=17% Similarity=0.190 Sum_probs=97.4
Q ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch--------hhHHhh--
Q 038048 85 DRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK--------KIQITV-- 154 (575)
Q Consensus 85 p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~--------k~aL~L-- 154 (575)
|....+++.+|.+|...|++++|+.++..+++......+. ........+..++..+...|+ ..++.+
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGH---DHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE 100 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCS---SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4456688899999999999999999976665543222100 011112233444444444444 122333
Q ss_pred ------cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHH-HHHHHHHHHHcCCHHHHHHHHHHHH
Q 038048 155 ------EQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLG--------VDMNK-QCNLAICLMHMNRVTEAKSLLQAVK 219 (575)
Q Consensus 155 ------~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeid--------Pdn~~-~~NLA~iy~~qGr~eEAi~lLekAL 219 (575)
.+....+++++|.+|..+|++++|+.+|++++++. |.... +.++|.+|..+|++++|+.+|++++
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 101 KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35556799999999999999999999999999985 44444 8899999999999999999999999
Q ss_pred HH
Q 038048 220 IS 221 (575)
Q Consensus 220 el 221 (575)
.+
T Consensus 181 ~~ 182 (311)
T 3nf1_A 181 EI 182 (311)
T ss_dssp HH
T ss_pred HH
Confidence 98
No 156
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.08 E-value=7e-11 Score=121.24 Aligned_cols=119 Identities=13% Similarity=0.062 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHH
Q 038048 88 DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAW 167 (575)
Q Consensus 88 ~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~ 167 (575)
...++.+|.+|...|+|++|+.+|..++........ .. ..++...+... + ...+++++|.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--~~-------~~~~~~~~~~~------l-----~~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--FQ-------LYGKYQDMALA------V-----KNPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--HT-------CCHHHHHHHHH------H-----HTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--hh-------hcccHHHHHHH------H-----HHHHHHHHHH
Confidence 457889999999999999999997665543211110 00 00000000000 0 1238999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 168 AYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 168 aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
+|..+|+|++|+.+|++||+++|++.. ++++|.+|..+|++++|+.+|+++++++|++.
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~ 298 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDK 298 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH
Confidence 999999999999999999999999999 99999999999999999999999999999765
No 157
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.07 E-value=9.5e-10 Score=93.25 Aligned_cols=75 Identities=16% Similarity=0.114 Sum_probs=71.5
Q ss_pred HHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048 151 QITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNR 225 (575)
Q Consensus 151 aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n 225 (575)
++.++|++..+++++|.+|..+|++++|+.+|+++++++|++.. +++||.+|..+|++++|+.+|++++.+.|..
T Consensus 11 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 86 (115)
T 2kat_A 11 MLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSR 86 (115)
T ss_dssp HHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 46779999999999999999999999999999999999999999 9999999999999999999999999998854
No 158
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.07 E-value=5.3e-11 Score=98.54 Aligned_cols=66 Identities=14% Similarity=0.102 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048 160 RILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNR 225 (575)
Q Consensus 160 ~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n 225 (575)
.+++++|.++..+|+|++|+.+|++|++++|++.. ++++|.+|..+|++++|+..|++++.++|++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 35555666666666666666666666666666655 5666666666666666666666666665554
No 159
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.07 E-value=1e-09 Score=108.45 Aligned_cols=131 Identities=11% Similarity=0.021 Sum_probs=101.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCcHH------HHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHH
Q 038048 61 KHIQLIDKDPSRAVSLFWAAINAGDRVDS------ALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIA 134 (575)
Q Consensus 61 ~~l~l~~kd~eeAi~lf~kAL~l~p~~~~------Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a 134 (575)
....+..+++++|+.+|++++...+.... .++.+|.++...|++++|+.++..+++. .
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~-----------~----- 145 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQ-----------Q----- 145 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHT-----------C-----
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH-----------h-----
Confidence 34567789999999999999987765543 3456999999999999999985543220 0
Q ss_pred HHhHHHHHHHHhchhhHHhhcCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCH----H-HHHHHHHHH
Q 038048 135 FAGVKTKMARSQGKKIQITVEQE---KSRILGNLAWAYMQQNNFEMAEQYYRKALSLG---VDMN----K-QCNLAICLM 203 (575)
Q Consensus 135 ~~~nla~al~sqg~k~aL~L~Pd---~~~a~~nLG~aY~~qGryeEAe~~yrkALeid---Pdn~----~-~~NLA~iy~ 203 (575)
.-.++ ...++++||.+|..+|+|++|+.+|++|+++. |.+. . ++|+|.+|.
T Consensus 146 ------------------~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~ 207 (293)
T 3u3w_A 146 ------------------LTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY 207 (293)
T ss_dssp ------------------CCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHH
T ss_pred ------------------cccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 00111 13479999999999999999999999999642 1222 2 789999999
Q ss_pred HcCCHHHHHHHHHHHHHHcCCC
Q 038048 204 HMNRVTEAKSLLQAVKISAGNR 225 (575)
Q Consensus 204 ~qGr~eEAi~lLekALel~P~n 225 (575)
.+|++++|+.++++++++.+..
T Consensus 208 ~~~~y~~A~~~~~~al~~~~~~ 229 (293)
T 3u3w_A 208 LDSRYEESLYQVNKAIEISCRI 229 (293)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHhHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999987643
No 160
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.06 E-value=9.1e-10 Score=112.54 Aligned_cols=124 Identities=17% Similarity=0.023 Sum_probs=106.8
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHH
Q 038048 62 HIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTK 141 (575)
Q Consensus 62 ~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~ 141 (575)
..+...+++++|...|..++..+|... +++.+|.++.+.++|++|+.++....
T Consensus 110 ~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~-------------------------- 162 (282)
T 4f3v_A 110 ACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAG-------------------------- 162 (282)
T ss_dssp HHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGG--------------------------
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhh--------------------------
Confidence 445678999999999999998899888 99999999999999999999865421
Q ss_pred HHHHhchhhHHhhcCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHH-HHHHHHHHHHcCCHHHHHHH
Q 038048 142 MARSQGKKIQITVEQEK---SRILGNLAWAYMQQNNFEMAEQYYRKALSLG--VD-MNK-QCNLAICLMHMNRVTEAKSL 214 (575)
Q Consensus 142 al~sqg~k~aL~L~Pd~---~~a~~nLG~aY~~qGryeEAe~~yrkALeid--Pd-n~~-~~NLA~iy~~qGr~eEAi~l 214 (575)
. .+++ ..++++||.++..+|++++|+.+|++++... |. ... ++++|.++..+|+.++|..+
T Consensus 163 -----------~-~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~ 230 (282)
T 4f3v_A 163 -----------K-WPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVAL 230 (282)
T ss_dssp -----------G-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred -----------c-cCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 1 1122 3489999999999999999999999999655 66 445 99999999999999999999
Q ss_pred HHHHHHHcCC
Q 038048 215 LQAVKISAGN 224 (575)
Q Consensus 215 LekALel~P~ 224 (575)
|++++..+|+
T Consensus 231 l~~a~a~~P~ 240 (282)
T 4f3v_A 231 LEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHSCC
T ss_pred HHHHHhcCCc
Confidence 9999999995
No 161
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.05 E-value=1.2e-09 Score=100.05 Aligned_cols=126 Identities=16% Similarity=0.013 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch--------hhHHhhcCCcHH
Q 038048 89 SALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK--------KIQITVEQEKSR 160 (575)
Q Consensus 89 ~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~ 160 (575)
..++.+|.++...|++++|+..+..+++.... ....+..++.++...|+ +.++.++| ++.
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-----------~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~ 74 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQS-----------RGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNS 74 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHT-----------SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-----------cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChH
Confidence 45778999999999999999998887765432 22334444555555555 23466678 666
Q ss_pred HHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 161 ILGNLAWAY-MQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 161 a~~nLG~aY-~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
.+..++.+. ...+...+|+..|+++++++|++.. +++||.+|..+|++++|+..|+++++.+|+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 142 (176)
T 2r5s_A 75 YKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQ 142 (176)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTT
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccC
Confidence 666666443 3444556789999999999999999 99999999999999999999999999998653
No 162
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.05 E-value=1.9e-09 Score=97.60 Aligned_cols=111 Identities=15% Similarity=0.163 Sum_probs=97.3
Q ss_pred hhcCCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHH-HHHCCCH--HHHHHHHhcCHHHHHHHHH
Q 038048 47 IHKVPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVV-MKQLDRS--DEAIEARSGRIEEEIELLQ 123 (575)
Q Consensus 47 ~~~~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~i-y~qqGry--dEAie~~~gaLeeAi~lL~ 123 (575)
+...|.....+...+.++...+++++|+.+|++++..+|.+..+++++|.+ |...|++ ++|+.++..
T Consensus 37 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~---------- 106 (177)
T 2e2e_A 37 IRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDK---------- 106 (177)
T ss_dssp HHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHH----------
T ss_pred HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHH----------
Confidence 344555556667777888999999999999999999999999999999999 8899999 999988433
Q ss_pred HHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048 124 NKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK 194 (575)
Q Consensus 124 ~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~ 194 (575)
++.++|++..+++++|.+|..+|++++|+.+|+++++++|++..
T Consensus 107 ---------------------------al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 107 ---------------------------ALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp ---------------------------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred ---------------------------HHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 24568999999999999999999999999999999999999865
No 163
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.03 E-value=1.6e-09 Score=108.36 Aligned_cols=130 Identities=13% Similarity=0.059 Sum_probs=95.1
Q ss_pred HHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch--------hhHHhhcC------
Q 038048 91 LKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK--------KIQITVEQ------ 156 (575)
Q Consensus 91 l~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~--------k~aL~L~P------ 156 (575)
+...|.+|..+|++++|+.++..+++..... .........+.+++.++...|+ ..++.+.+
T Consensus 39 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~ 113 (307)
T 2ifu_A 39 YAKAAVAFKNAKQLEQAKDAYLQEAEAHANN-----RSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPD 113 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 3345789999999999999977766543221 1111122345566666665554 22333321
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 157 EKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDM------NK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 157 d~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn------~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
....++.++|.+|.. |++++|+.+|++|+++.|.. .. +.++|.+|..+|++++|+.+|++++.+.+++.
T Consensus 114 ~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 189 (307)
T 2ifu_A 114 TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEME 189 (307)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Confidence 124589999999999 99999999999999998754 23 78999999999999999999999999987653
No 164
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.03 E-value=4.7e-09 Score=113.56 Aligned_cols=113 Identities=14% Similarity=0.115 Sum_probs=99.8
Q ss_pred CCCCCcHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhh
Q 038048 50 VPSGDSPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNI 129 (575)
Q Consensus 50 ~ps~d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~ 129 (575)
.|.....+...+..+...+++++|+.+|+++++.+|++..++++||.+|..+|++++|++++..
T Consensus 53 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~---------------- 116 (568)
T 2vsy_A 53 HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTR---------------- 116 (568)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH----------------
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH----------------
Confidence 3444455666778888999999999999999999999999999999999999999999998543
Q ss_pred HHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHH-HHHHH
Q 038048 130 EEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQ---NNFEMAEQYYRKALSLGVDMNK-QCNLA 199 (575)
Q Consensus 130 ~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~q---GryeEAe~~yrkALeidPdn~~-~~NLA 199 (575)
++.++|++..++.++|.+|..+ |++++|+.+|+++++++|++.. +..|+
T Consensus 117 ---------------------al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 117 ---------------------AHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp ---------------------HHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred ---------------------HHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 2456899999999999999999 9999999999999999999987 77766
No 165
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.02 E-value=1.3e-09 Score=92.31 Aligned_cols=98 Identities=12% Similarity=0.049 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhH
Q 038048 72 RAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQ 151 (575)
Q Consensus 72 eAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~a 151 (575)
.|+..|++++..+|.+..++++||.+|...|++++|+.++.. +
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~-------------------------------------a 45 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRA-------------------------------------A 45 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------------------------H
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHH-------------------------------------H
Confidence 588999999999999999999999999999999999998543 2
Q ss_pred HhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHcC
Q 038048 152 ITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK---QCNLAICLMHMN 206 (575)
Q Consensus 152 L~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~---~~NLA~iy~~qG 206 (575)
+.++|++..++++||.+|..+|++++|+.+|++++++.|++.. ...+..++...|
T Consensus 46 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~l~ 103 (115)
T 2kat_A 46 LDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLA 103 (115)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhc
Confidence 4568999999999999999999999999999999999885442 445555444433
No 166
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.02 E-value=1.7e-09 Score=102.96 Aligned_cols=131 Identities=8% Similarity=-0.121 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhch--------hhHHhhcCCcH
Q 038048 88 DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGK--------KIQITVEQEKS 159 (575)
Q Consensus 88 ~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~ 159 (575)
+.+++++|..+...|++++|+..+...++.... .......+..++.++...|+ ...+.+.|++.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~--------~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~ 75 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPF--------GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP 75 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--------STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence 567899999999999999999996654432110 00011223344444444444 34566778765
Q ss_pred H---HHHHHHHHHHH------------------cCCHHHHHHHHHHHHHhCCCCHH-H-----------------HHHHH
Q 038048 160 R---ILGNLAWAYMQ------------------QNNFEMAEQYYRKALSLGVDMNK-Q-----------------CNLAI 200 (575)
Q Consensus 160 ~---a~~nLG~aY~~------------------qGryeEAe~~yrkALeidPdn~~-~-----------------~NLA~ 200 (575)
. +++.+|.+|.. +|++++|+..|+++++.+|++.. . +.+|.
T Consensus 76 ~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~ 155 (225)
T 2yhc_A 76 NIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAE 155 (225)
T ss_dssp THHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 88999988876 67999999999999999999874 2 57899
Q ss_pred HHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 201 CLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 201 iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
+|..+|++++|+..|+++++..|++.
T Consensus 156 ~~~~~~~~~~A~~~~~~~l~~~p~~~ 181 (225)
T 2yhc_A 156 YYTERGAWVAVVNRVEGMLRDYPDTQ 181 (225)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTSH
T ss_pred HHHHcCcHHHHHHHHHHHHHHCcCCC
Confidence 99999999999999999999999754
No 167
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.00 E-value=8e-09 Score=110.58 Aligned_cols=150 Identities=14% Similarity=0.019 Sum_probs=115.1
Q ss_pred cCChH-------HHHHHHHHHHH-cCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhH
Q 038048 67 DKDPS-------RAVSLFWAAIN-AGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGV 138 (575)
Q Consensus 67 ~kd~e-------eAi~lf~kAL~-l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~n 138 (575)
.|+++ +|+..|++|++ ..|++..++..+|.++...|++++|+.++.++++...... ...+.+
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~----------~~~~~~ 361 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP----------TLVYIQ 361 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCH----------HHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCc----------hHHHHH
Confidence 58876 99999999997 7999999999999999999999999999776654211000 011222
Q ss_pred HHHHHHHhch--------hhHHhhcCCcHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCH
Q 038048 139 KTKMARSQGK--------KIQITVEQEKSRILGNLAWA-YMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRV 208 (575)
Q Consensus 139 la~al~sqg~--------k~aL~L~Pd~~~a~~nLG~a-Y~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~ 208 (575)
++..+...|+ ..++...|.....+...+.+ +..+|++++|..+|+++|++.|+++. +.++|.++..+|++
T Consensus 362 ~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~ 441 (530)
T 2ooe_A 362 YMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNED 441 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCH
Confidence 2222222222 23556667666666666655 45799999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHcCCCC
Q 038048 209 TEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 209 eEAi~lLekALel~P~n~ 226 (575)
++|..+|++++...|.++
T Consensus 442 ~~Ar~~~~~al~~~~~~~ 459 (530)
T 2ooe_A 442 NNTRVLFERVLTSGSLPP 459 (530)
T ss_dssp HHHHHHHHHHHHSCCSCG
T ss_pred hhHHHHHHHHHhccCCCH
Confidence 999999999999876554
No 168
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.00 E-value=2.6e-09 Score=85.30 Aligned_cols=67 Identities=27% Similarity=0.289 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048 159 SRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNR 225 (575)
Q Consensus 159 ~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n 225 (575)
..+++++|.+|..+|++++|+.+|+++++++|++.. ++++|.+|..+|++++|+.+|+++++++|++
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 76 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 76 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 345555555555555555555555555555555555 5555555555555555555555555555543
No 169
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.99 E-value=1.7e-09 Score=102.89 Aligned_cols=136 Identities=10% Similarity=-0.071 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhc---
Q 038048 71 SRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQG--- 147 (575)
Q Consensus 71 eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg--- 147 (575)
.+|+.+|+++.+. .++.++++||.+|...+++++|+.++..+.+... .....+++.++...|
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~-------------~~a~~~lg~~y~~~g~~~ 67 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGD-------------GDALALLAQLKIRNPQQA 67 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC-------------HHHHHHHHHHTTSSTTSC
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHcCCCCC
Confidence 4688999999886 5688999999999999999999999776544210 112223333333211
Q ss_pred h------hhHHhhcCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCC--CHH-HHHHHHHHHH----cCCHHH
Q 038048 148 K------KIQITVEQEKSRILGNLAWAYMQ----QNNFEMAEQYYRKALSLGVD--MNK-QCNLAICLMH----MNRVTE 210 (575)
Q Consensus 148 ~------k~aL~L~Pd~~~a~~nLG~aY~~----qGryeEAe~~yrkALeidPd--n~~-~~NLA~iy~~----qGr~eE 210 (575)
+ -+...+++.++.++++||.+|.. .+++++|+.+|++|++..|. ++. +++||.+|.. .+++++
T Consensus 68 ~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~ 147 (212)
T 3rjv_A 68 DYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVK 147 (212)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHH
Confidence 1 11233578889999999999998 99999999999999999984 567 9999999999 999999
Q ss_pred HHHHHHHHHHH
Q 038048 211 AKSLLQAVKIS 221 (575)
Q Consensus 211 Ai~lLekALel 221 (575)
|+.+|+++++.
T Consensus 148 A~~~~~~A~~~ 158 (212)
T 3rjv_A 148 ASEYFKGSSSL 158 (212)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 99999999997
No 170
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.97 E-value=3e-08 Score=101.97 Aligned_cols=148 Identities=7% Similarity=0.043 Sum_probs=110.4
Q ss_pred CChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCC--CHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHH--
Q 038048 68 KDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLD--RSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMA-- 143 (575)
Q Consensus 68 kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqG--rydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al-- 143 (575)
...++|+.++.++|.++|++..+++..+.++..+| ++++|+.+....+....+ ....+.....++
T Consensus 47 e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-----------~y~aW~~R~~iL~~ 115 (306)
T 3dra_A 47 EYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-----------NYQIWNYRQLIIGQ 115 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-----------CCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-----------cHHHHHHHHHHHHH
Confidence 34578999999999999999999999999999999 999999885444332211 111111111111
Q ss_pred --HHh---ch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCC
Q 038048 144 --RSQ---GK--------KIQITVEQEKSRILGNLAWAYMQQNNFE--MAEQYYRKALSLGVDMNK-QCNLAICLMHMNR 207 (575)
Q Consensus 144 --~sq---g~--------k~aL~L~Pd~~~a~~nLG~aY~~qGrye--EAe~~yrkALeidPdn~~-~~NLA~iy~~qGr 207 (575)
... ++ ..++..+|.+..+|++.++++..+|+++ +++.++.++++++|.|.. +.+.+.++...|+
T Consensus 116 ~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~ 195 (306)
T 3dra_A 116 IMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKH 195 (306)
T ss_dssp HHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGG
T ss_pred HHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence 111 11 3456778888888888888888888888 888888888888888888 8888888888887
Q ss_pred ------HHHHHHHHHHHHHHcCCCC
Q 038048 208 ------VTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 208 ------~eEAi~lLekALel~P~n~ 226 (575)
+++++.++++++..+|+|.
T Consensus 196 ~~~~~~~~eEl~~~~~aI~~~p~n~ 220 (306)
T 3dra_A 196 LATDNTIDEELNYVKDKIVKCPQNP 220 (306)
T ss_dssp GCCHHHHHHHHHHHHHHHHHCSSCH
T ss_pred cchhhhHHHHHHHHHHHHHhCCCCc
Confidence 8888888888888888764
No 171
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.93 E-value=2.9e-09 Score=117.75 Aligned_cols=156 Identities=6% Similarity=-0.026 Sum_probs=105.1
Q ss_pred ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCC----------HHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhH
Q 038048 69 DPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDR----------SDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGV 138 (575)
Q Consensus 69 d~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGr----------ydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~n 138 (575)
-.++|+.++.++|..+|++..+|+..+.++...|+ +++|++.+..
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~------------------------- 98 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLES------------------------- 98 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH-------------------------
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHH-------------------------
Confidence 45789999999999999999999999999999988 5666655322
Q ss_pred HHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcC-CHHHHHHH
Q 038048 139 KTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQN--NFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMN-RVTEAKSL 214 (575)
Q Consensus 139 la~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qG--ryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qG-r~eEAi~l 214 (575)
++..+|++..+|++.++++..+| ++++|+.++.++++++|.|.. |.+.+.++...| .+++|+++
T Consensus 99 ------------~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~ 166 (567)
T 1dce_A 99 ------------CLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAF 166 (567)
T ss_dssp ------------HHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred ------------HHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHH
Confidence 24456677777777777777777 557777777777777777776 667777777777 67777777
Q ss_pred HHHHHHHcCCCCCChh----HHHHH--------------HHHHHHHHHhccccccCcccccccch
Q 038048 215 LQAVKISAGNRQMDTS----YSRSF--------------ERAIQMLTELESPSVLKLTELEVGDD 261 (575)
Q Consensus 215 LekALel~P~n~~~~~----~l~sl--------------erA~elL~ele~al~~~p~~~e~~~~ 261 (575)
++++++.+|.+..+-. .+..+ ++..+.+..+..++..+|..+..|.-
T Consensus 167 ~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y 231 (567)
T 1dce_A 167 TDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFY 231 (567)
T ss_dssp HHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHH
T ss_pred HHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHH
Confidence 7777776666532110 11111 33455555555566666666655443
No 172
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.93 E-value=5.7e-09 Score=86.12 Aligned_cols=82 Identities=17% Similarity=0.119 Sum_probs=69.7
Q ss_pred HhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HH-HHHHHH
Q 038048 136 AGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDM------NK-QCNLAI 200 (575)
Q Consensus 136 ~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn------~~-~~NLA~ 200 (575)
+.+++..+...|+ ..++.++|++..+++++|.+|..+|++++|+.+|+++++++|++ .. ++++|.
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 86 (111)
T 2l6j_A 7 QKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLEL 86 (111)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHH
Confidence 4455555555555 45688899999999999999999999999999999999999999 77 889999
Q ss_pred HHHHcCCHHHHHHHHHH
Q 038048 201 CLMHMNRVTEAKSLLQA 217 (575)
Q Consensus 201 iy~~qGr~eEAi~lLek 217 (575)
++..+|++++|+..+++
T Consensus 87 ~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 87 AQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHCCCCCSSSSSS
T ss_pred HHHHHHhHhhhHhHHHH
Confidence 99999988888776654
No 173
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.89 E-value=3.2e-08 Score=101.14 Aligned_cols=159 Identities=11% Similarity=0.107 Sum_probs=112.4
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCc-----------------HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHH---
Q 038048 62 HIQLIDKDPSRAVSLFWAAINAGDRV-----------------DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIEL--- 121 (575)
Q Consensus 62 ~l~l~~kd~eeAi~lf~kAL~l~p~~-----------------~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~l--- 121 (575)
...+..|++++|+..|.+++...+.. ..++.+||.+|..+|++++|++++...+.....+
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 44577899999999999999987653 2468999999999999999999977766543211
Q ss_pred -----HHHHHHhh-------HHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 038048 122 -----LQNKLKNI-------EEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLG 189 (575)
Q Consensus 122 -----L~~~L~l~-------~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeid 189 (575)
+...+..+ .....++......... .........++.+||.+|..+|+|++|+.++++++...
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 165 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKR------EKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREF 165 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHH------SSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH------hCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 11111110 0111111111111111 11133446799999999999999999999999999862
Q ss_pred ------CCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 190 ------VDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 190 ------Pdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
+.... +.++|.+|..+|++++|..+|++++.+.+...
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 209 (434)
T 4b4t_Q 166 KKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIY 209 (434)
T ss_dssp TTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred HhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCC
Confidence 22334 78999999999999999999999999876443
No 174
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.89 E-value=9.1e-09 Score=82.06 Aligned_cols=72 Identities=22% Similarity=0.258 Sum_probs=61.3
Q ss_pred HHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHc
Q 038048 135 FAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHM 205 (575)
Q Consensus 135 ~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~q 205 (575)
.+..++..+...++ ..++.++|++..+++++|.+|..+|++++|+.+|+++++++|++.. +.+||.++..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 90 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 90 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Confidence 34455555555555 3567889999999999999999999999999999999999999999 99999999876
Q ss_pred C
Q 038048 206 N 206 (575)
Q Consensus 206 G 206 (575)
|
T Consensus 91 g 91 (91)
T 1na3_A 91 G 91 (91)
T ss_dssp C
T ss_pred C
Confidence 5
No 175
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.88 E-value=1.8e-09 Score=117.77 Aligned_cols=106 Identities=8% Similarity=0.028 Sum_probs=82.9
Q ss_pred HHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHH
Q 038048 92 KDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQ 171 (575)
Q Consensus 92 ~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~ 171 (575)
...+..+..+|+|++|+.++.++++....+++.. +|+-..+++|||.+|..
T Consensus 313 le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~-----------------------------Hp~~a~~~~nLa~~y~~ 363 (490)
T 3n71_A 313 LEKIDKARSEGLYHEVVKLCRECLEKQEPVFADT-----------------------------NLYVLRLLSIASEVLSY 363 (490)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTT-----------------------------SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC-----------------------------CHHHHHHHHHHHHHHHH
Confidence 3455668889999999998766544322222111 33345589999999999
Q ss_pred cCCHHHHHHHHHHHHHhC-----CCCHH----HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 172 QNNFEMAEQYYRKALSLG-----VDMNK----QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 172 qGryeEAe~~yrkALeid-----Pdn~~----~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
+|+|++|+.+|+++|++. |+++. ++|||.+|..+|++++|+.+|++|+++.....
T Consensus 364 ~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~l 427 (490)
T 3n71_A 364 LQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTH 427 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred hcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999973 56554 78999999999999999999999999876544
No 176
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.88 E-value=2.2e-08 Score=107.22 Aligned_cols=152 Identities=9% Similarity=0.024 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-------CCCHHHHHHHHhcCHHHHHHHHHHHHH-hhHHHHHHHhHHHHH
Q 038048 71 SRAVSLFWAAINAGDRVDSALKDMAVVMKQ-------LDRSDEAIEARSGRIEEEIELLQNKLK-NIEEGIAFAGVKTKM 142 (575)
Q Consensus 71 eeAi~lf~kAL~l~p~~~~Al~nLA~iy~q-------qGrydEAie~~~gaLeeAi~lL~~~L~-l~~~a~a~~~nla~a 142 (575)
..|+..|++++...|.++.+|+++|..+.+ .|+++.|... .+++..++..++. ..+.....+..++..
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~----~~~A~~~~~~Al~~~~p~~~~l~~~~~~~ 330 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLF----SDEAANIYERAISTLLKKNMLLYFAYADY 330 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHH----HHHHHHHHHHHTTTTCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhh----hHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 478899999999999999999999999987 7998833211 1223333344432 233333444455555
Q ss_pred HHHhch--------hhHHhhcCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHH-HHHcCCHHHH
Q 038048 143 ARSQGK--------KIQITVEQEKS-RILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAIC-LMHMNRVTEA 211 (575)
Q Consensus 143 l~sqg~--------k~aL~L~Pd~~-~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~i-y~~qGr~eEA 211 (575)
+...|+ +.++.+.|.+. .+|.++|.++..+|++++|..+|++|++..|.... +...|.+ +..+|++++|
T Consensus 331 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A 410 (530)
T 2ooe_A 331 EESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVA 410 (530)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHH
T ss_pred HHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHH
Confidence 554444 34567777764 58888888888888888888888888888887666 5555544 4468888888
Q ss_pred HHHHHHHHHHcCCCC
Q 038048 212 KSLLQAVKISAGNRQ 226 (575)
Q Consensus 212 i~lLekALel~P~n~ 226 (575)
..+|+++++..|++.
T Consensus 411 ~~~~e~al~~~p~~~ 425 (530)
T 2ooe_A 411 FKIFELGLKKYGDIP 425 (530)
T ss_dssp HHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHCCCCH
Confidence 888888888888654
No 177
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.88 E-value=1.6e-08 Score=86.79 Aligned_cols=106 Identities=20% Similarity=0.204 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHH
Q 038048 88 DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAW 167 (575)
Q Consensus 88 ~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~ 167 (575)
..++..+|.+|...|++++|+.++..+++.....-. ......++.++|.
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-------------------------------~~~~~~~~~~l~~ 57 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD-------------------------------KAAERIAYSNLGN 57 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-------------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC-------------------------------chHHHHHHHHHHH
Confidence 357889999999999999999996554432211000 0011248899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC------HH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 038048 168 AYMQQNNFEMAEQYYRKALSLGVDM------NK-QCNLAICLMHMNRVTEAKSLLQAVKISAGN 224 (575)
Q Consensus 168 aY~~qGryeEAe~~yrkALeidPdn------~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~ 224 (575)
+|..+|++++|+.+|++++++.+.. .. ++++|.+|..+|++++|+.++++++.+.+.
T Consensus 58 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 121 (164)
T 3ro3_A 58 AYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 121 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999986543 33 779999999999999999999999998653
No 178
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.87 E-value=7.3e-08 Score=102.11 Aligned_cols=68 Identities=19% Similarity=0.165 Sum_probs=61.4
Q ss_pred cCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH----cCCHHHHHHHHHHHHHHcCC
Q 038048 155 EQEKSRILGNLAWAYMQ----QNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMH----MNRVTEAKSLLQAVKISAGN 224 (575)
Q Consensus 155 ~Pd~~~a~~nLG~aY~~----qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~----qGr~eEAi~lLekALel~P~ 224 (575)
+..++.++++||.+|.. .+++++|+.+|++|++.. ++. +++||.+|.. .+++++|+.+|+++++..|+
T Consensus 359 ~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 359 AKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 44778899999999999 999999999999999864 577 9999999999 99999999999999999853
No 179
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.86 E-value=1.1e-07 Score=95.67 Aligned_cols=58 Identities=17% Similarity=0.004 Sum_probs=45.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHH
Q 038048 59 RAKHIQLIDKDPSRAVSLFWAAINAG--------DRVDSALKDMAVVMKQLDRSDEAIEARSGRIE 116 (575)
Q Consensus 59 rA~~l~l~~kd~eeAi~lf~kAL~l~--------p~~~~Al~nLA~iy~qqGrydEAie~~~gaLe 116 (575)
..+.++...|++++|+.+|++++... +....++.++|.+|..+|++++|+.++...++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 163 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIE 163 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34556677899999999999998764 33456788899999999999999998655443
No 180
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.84 E-value=4.5e-09 Score=86.28 Aligned_cols=64 Identities=16% Similarity=0.140 Sum_probs=34.5
Q ss_pred hcCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048 154 VEQEKSR-ILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNR 225 (575)
Q Consensus 154 L~Pd~~~-a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n 225 (575)
++|++.. +++++|.+|..+|++++|+.+|+++++++|++.. +.+ +.+.+|+.+|++++..+|++
T Consensus 29 ~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 29 TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHHHHHHHHHCCTTHHHHCC
T ss_pred HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHHHHHHHHHHHHhccCccc
Confidence 3555555 5555555555555555555555555555555554 322 44555555555555555543
No 181
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.84 E-value=2.1e-08 Score=111.01 Aligned_cols=120 Identities=8% Similarity=0.039 Sum_probs=111.0
Q ss_pred hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCC--CHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhc
Q 038048 70 PSRAVSLFWAAINAGDRVDSALKDMAVVMKQLD--RSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQG 147 (575)
Q Consensus 70 ~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqG--rydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg 147 (575)
+++|+.+|.+++..+|++..+|++.+.++.+.| ++++|++.+.+
T Consensus 89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k---------------------------------- 134 (567)
T 1dce_A 89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCAR---------------------------------- 134 (567)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHH----------------------------------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHH----------------------------------
Confidence 899999999999999999999999999999999 66998887433
Q ss_pred hhhHHhhcCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHc--------------CCHHHH
Q 038048 148 KKIQITVEQEKSRILGNLAWAYMQQN-NFEMAEQYYRKALSLGVDMNK-QCNLAICLMHM--------------NRVTEA 211 (575)
Q Consensus 148 ~k~aL~L~Pd~~~a~~nLG~aY~~qG-ryeEAe~~yrkALeidPdn~~-~~NLA~iy~~q--------------Gr~eEA 211 (575)
++.++|.+..+|++.++++..+| .+++|++++.++++++|+|.. |++++.++..+ +++++|
T Consensus 135 ---~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~ee 211 (567)
T 1dce_A 135 ---FLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKE 211 (567)
T ss_dssp ---HHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHH
T ss_pred ---HHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHH
Confidence 35679999999999999999999 999999999999999999999 99999999885 678999
Q ss_pred HHHHHHHHHHcCCCC
Q 038048 212 KSLLQAVKISAGNRQ 226 (575)
Q Consensus 212 i~lLekALel~P~n~ 226 (575)
++++.+++.++|++.
T Consensus 212 l~~~~~ai~~~P~~~ 226 (567)
T 1dce_A 212 LELVQNAFFTDPNDQ 226 (567)
T ss_dssp HHHHHHHHHHCSSCS
T ss_pred HHHHHHHHhhCCCCc
Confidence 999999999999875
No 182
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.83 E-value=3e-08 Score=88.86 Aligned_cols=110 Identities=16% Similarity=0.134 Sum_probs=95.0
Q ss_pred cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHh
Q 038048 67 DKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQ 146 (575)
Q Consensus 67 ~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sq 146 (575)
.+|+++|+.+|+++.+.+... +. ||.+|...+.+++|+.++..+
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~~--a~--lg~~y~~g~~~~~A~~~~~~A-------------------------------- 51 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEMF--GC--LSLVSNSQINKQKLFQYLSKA-------------------------------- 51 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCTT--HH--HHHHTCTTSCHHHHHHHHHHH--------------------------------
T ss_pred ccCHHHHHHHHHHHHcCCCHh--hh--HHHHHHcCCCHHHHHHHHHHH--------------------------------
Confidence 357899999999999987543 44 999999999999988875442
Q ss_pred chhhHHhhcCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH----cCCHHHHHHHHHH
Q 038048 147 GKKIQITVEQEKSRILGNLAWAYMQ----QNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMH----MNRVTEAKSLLQA 217 (575)
Q Consensus 147 g~k~aL~L~Pd~~~a~~nLG~aY~~----qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~----qGr~eEAi~lLek 217 (575)
.+..++.++++||.+|.. .+++++|+.+|++|.+. .++. .++||.+|.. .+++++|+.+|++
T Consensus 52 -------a~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 122 (138)
T 1klx_A 52 -------CELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEK 122 (138)
T ss_dssp -------HHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred -------HcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHH
Confidence 123567799999999999 99999999999999987 6777 9999999999 9999999999999
Q ss_pred HHHH
Q 038048 218 VKIS 221 (575)
Q Consensus 218 ALel 221 (575)
+.+.
T Consensus 123 Aa~~ 126 (138)
T 1klx_A 123 ACRL 126 (138)
T ss_dssp HHHT
T ss_pred HHHC
Confidence 9986
No 183
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.83 E-value=1.5e-07 Score=99.65 Aligned_cols=149 Identities=13% Similarity=0.047 Sum_probs=102.0
Q ss_pred HHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----CCCHHHHHHHHhcCHHHHHHHHHHHHH
Q 038048 56 PYVRAKHIQLI----DKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQ----LDRSDEAIEARSGRIEEEIELLQNKLK 127 (575)
Q Consensus 56 ~yarA~~l~l~----~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~q----qGrydEAie~~~gaLeeAi~lL~~~L~ 127 (575)
.+...+..+.. .+++++|+.+|+++++. ++..+++.||.+|.. .+++++|+.++..+.+...
T Consensus 41 a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~-------- 110 (490)
T 2xm6_A 41 AQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGL-------- 110 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC--------
Confidence 44455566666 78999999999999987 467899999999999 9999999999766543210
Q ss_pred hhHHHHHHHhHHHHHHHH----hch------hhHHhhcCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCH
Q 038048 128 NIEEGIAFAGVKTKMARS----QGK------KIQITVEQEKSRILGNLAWAYMQ----QNNFEMAEQYYRKALSLGVDMN 193 (575)
Q Consensus 128 l~~~a~a~~~nla~al~s----qg~------k~aL~L~Pd~~~a~~nLG~aY~~----qGryeEAe~~yrkALeidPdn~ 193 (575)
.....+++.++.. .++ .....++..+..++++||.+|.. .+++++|+.+|++|++. ++.
T Consensus 111 -----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~ 183 (490)
T 2xm6_A 111 -----PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNV 183 (490)
T ss_dssp -----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH
T ss_pred -----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCH
Confidence 0111122222222 111 01122345667778888888877 77888888888888775 456
Q ss_pred H-HHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q 038048 194 K-QCNLAICLMH----MNRVTEAKSLLQAVKIS 221 (575)
Q Consensus 194 ~-~~NLA~iy~~----qGr~eEAi~lLekALel 221 (575)
. +++||.+|.. .+++++|+.+|+++++.
T Consensus 184 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 216 (490)
T 2xm6_A 184 WSCNQLGYMYSRGLGVERNDAISAQWYRKSATS 216 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC
Confidence 6 7788888877 78888888888877764
No 184
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.82 E-value=1.9e-07 Score=98.00 Aligned_cols=149 Identities=6% Similarity=-0.010 Sum_probs=114.8
Q ss_pred cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCC-CHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHH
Q 038048 67 DKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLD-RSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARS 145 (575)
Q Consensus 67 ~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqG-rydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~s 145 (575)
.+..++|+.++.++|.++|++..+++..+.++...| .+++++......+.. .+.....+.....++..
T Consensus 67 ~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~-----------nPKny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ-----------NLKSYQVWHHRLLLLDR 135 (349)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT-----------TCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh-----------CCCcHHHHHHHHHHHHH
Confidence 345578999999999999999999999999999999 488888875443332 12222222222222222
Q ss_pred h-c-h--------hhHHhhcCCcHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhCCCCHH-HHHHHHHHHHcC
Q 038048 146 Q-G-K--------KIQITVEQEKSRILGNLAWAYMQQNNFE--------MAEQYYRKALSLGVDMNK-QCNLAICLMHMN 206 (575)
Q Consensus 146 q-g-~--------k~aL~L~Pd~~~a~~nLG~aY~~qGrye--------EAe~~yrkALeidPdn~~-~~NLA~iy~~qG 206 (575)
. + . ..++..+|.+..+|++.++++...|.++ ++++++.++++++|.|.. +++.+.++...+
T Consensus 136 l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~ 215 (349)
T 3q7a_A 136 ISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRP 215 (349)
T ss_dssp HCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTST
T ss_pred hcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Confidence 2 1 1 3457778999999999999999888888 899999999999999998 999999998888
Q ss_pred C-------HHHHHHHHHHHHHHcCCCC
Q 038048 207 R-------VTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 207 r-------~eEAi~lLekALel~P~n~ 226 (575)
+ +++++.++++++.++|+|.
T Consensus 216 ~~~~~~~~~~eELe~~~~aI~~~P~n~ 242 (349)
T 3q7a_A 216 GAETSSRSLQDELIYILKSIHLIPHNV 242 (349)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHCTTCH
T ss_pred ccccchHHHHHHHHHHHHHHHhCCCCH
Confidence 7 7899999999999988764
No 185
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.80 E-value=2.6e-07 Score=95.52 Aligned_cols=162 Identities=12% Similarity=-0.043 Sum_probs=113.1
Q ss_pred CcHHHHHHHHHHHcCChHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHH-------HHH--
Q 038048 54 DSPYVRAKHIQLIDKDPSRAVSLFWAAINAGD--RVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEI-------ELL-- 122 (575)
Q Consensus 54 d~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p--~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi-------~lL-- 122 (575)
...+..++.++...|++++|+.++.+.|..+| ...+++..++.+|+.+|+++.|.+.+....+... .++
T Consensus 100 ~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~ 179 (310)
T 3mv2_B 100 PYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILN 179 (310)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHH
Confidence 44445677778889999999999999999987 7888999999999999999999998533211110 000
Q ss_pred --HHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------
Q 038048 123 --QNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQE--KSRILGNLAWAYMQQNNFEMAEQYYRKALSL---------- 188 (575)
Q Consensus 123 --~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd--~~~a~~nLG~aY~~qGryeEAe~~yrkALei---------- 188 (575)
...+.+...+ .+...++.-. ..+....|+ ....+++ +++.+|++++|+..++.++++
T Consensus 180 Laea~v~l~~g~----~~~q~A~~~f--~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~ 250 (310)
T 3mv2_B 180 LAESYIKFATNK----ETATSNFYYY--EELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENA 250 (310)
T ss_dssp HHHHHHHHHHTC----STTTHHHHHH--HHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHH
T ss_pred HHHHHHHHHhCC----ccHHHHHHHH--HHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccC
Confidence 0000000000 0011111100 112333454 2334444 899999999999999988887
Q ss_pred CCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 189 GVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 189 dPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
+|+++. ..|++.+...+|+ +|.++++++.+.+|+++
T Consensus 251 ~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 251 VLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp HSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred CCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 488988 8899999999998 99999999999999875
No 186
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.78 E-value=2.4e-07 Score=96.49 Aligned_cols=157 Identities=10% Similarity=0.045 Sum_probs=118.5
Q ss_pred HcCCh-HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCH---HHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHH
Q 038048 66 IDKDP-SRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRS---DEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTK 141 (575)
Q Consensus 66 ~~kd~-eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGry---dEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~ 141 (575)
..+++ ++|+.++.++|..+|++..+++..+.++...++. ++.. ..+++++..+...+...+.....+....-
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~----~~l~~EL~~~~~~L~~~PKny~aW~hR~w 116 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESA----ALVKAELGFLESCLRVNPKSYGTWHHRCW 116 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHH----HHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhh----HHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34554 5899999999999999999999999999887762 1111 11333444444444433333444444444
Q ss_pred HHHHhch----------hhHHhhcCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHc----
Q 038048 142 MARSQGK----------KIQITVEQEKSRILGNLAWAYMQQNN-FEMAEQYYRKALSLGVDMNK-QCNLAICLMHM---- 205 (575)
Q Consensus 142 al~sqg~----------k~aL~L~Pd~~~a~~nLG~aY~~qGr-yeEAe~~yrkALeidPdn~~-~~NLA~iy~~q---- 205 (575)
++...+. ..++.++|.+..+|++.++++...|. ++++++++.++++++|.|.. +++++.++...
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcc
Confidence 4443331 34678899999999999999999999 69999999999999999999 99999998887
Q ss_pred ----------CCHHHHHHHHHHHHHHcCCCC
Q 038048 206 ----------NRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 206 ----------Gr~eEAi~lLekALel~P~n~ 226 (575)
+.+++++.++.+++.++|+|.
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~ 227 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPNDQ 227 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTTCH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCCCH
Confidence 568999999999999999874
No 187
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.78 E-value=4.5e-09 Score=113.03 Aligned_cols=70 Identities=11% Similarity=0.003 Sum_probs=61.4
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHH----HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 157 EKSRILGNLAWAYMQQNNFEMAEQYYRKALSLG-----VDMNK----QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 157 d~~~a~~nLG~aY~~qGryeEAe~~yrkALeid-----Pdn~~----~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
+-..+++|||.+|..+|+|++|+.+|+++|++. |+++. ++|||.+|..+|++++|+.+|++|+++.....
T Consensus 338 ~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~l 416 (433)
T 3qww_A 338 YMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAH 416 (433)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHc
Confidence 334589999999999999999999999999873 55553 88999999999999999999999999876544
No 188
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.77 E-value=1.6e-07 Score=99.30 Aligned_cols=142 Identities=13% Similarity=0.049 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHcC---ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHH
Q 038048 56 PYVRAKHIQLIDK---DPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEG 132 (575)
Q Consensus 56 ~yarA~~l~l~~k---d~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a 132 (575)
.|.++.. ++... +..+|+.+|++|++++|++..++..++.+|.. ...+...-......+...+
T Consensus 199 l~Lra~~-~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~-------~~~~~~~~~~~~~~l~~a~------ 264 (372)
T 3ly7_A 199 NFYQAHD-YLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIV-------RHSQHPLDEKQLAALNTEI------ 264 (372)
T ss_dssp HHHHHHH-HHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-------HHHHSCCCHHHHHHHHHHH------
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------HhccCCCchhhHHHHHHHH------
Confidence 3344533 34443 45889999999999999999999999998872 1111100000001111110
Q ss_pred HHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHH
Q 038048 133 IAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQCNLAICLMHMNRVTEAK 212 (575)
Q Consensus 133 ~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~~~NLA~iy~~qGr~eEAi 212 (575)
. ...++.++|.++.++.-+|.++...|++++|+..+++|++++|+...+..+|.++...|++++|+
T Consensus 265 -----------~---a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~ 330 (372)
T 3ly7_A 265 -----------D---NIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAA 330 (372)
T ss_dssp -----------H---HHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred -----------H---HHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 0 01235668999999999999999999999999999999999986333888999999999999999
Q ss_pred HHHHHHHHHcCCC
Q 038048 213 SLLQAVKISAGNR 225 (575)
Q Consensus 213 ~lLekALel~P~n 225 (575)
+.|++|+.++|..
T Consensus 331 e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 331 DAYLTAFNLRPGA 343 (372)
T ss_dssp HHHHHHHHHSCSH
T ss_pred HHHHHHHhcCCCc
Confidence 9999999999953
No 189
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.76 E-value=9.9e-09 Score=86.20 Aligned_cols=85 Identities=9% Similarity=0.053 Sum_probs=68.5
Q ss_pred cCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHH
Q 038048 83 AGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRIL 162 (575)
Q Consensus 83 l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~ 162 (575)
.+|++..++++||.+|..+|++++|+.++.. ++.++|++..++
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~-------------------------------------al~~~p~~~~a~ 44 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEE-------------------------------------LVETDPDYVGTY 44 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------------------------HHHHSTTCTHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHH-------------------------------------HHHhCCCcHHHH
Confidence 3688899999999999999999999998543 356789999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHH
Q 038048 163 GNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK---QCNLAICLMH 204 (575)
Q Consensus 163 ~nLG~aY~~qGryeEAe~~yrkALeidPdn~~---~~NLA~iy~~ 204 (575)
++||.+|..+|++++|+.+|++++++.|.+.. ...+..++..
T Consensus 45 ~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~~~l~~ 89 (100)
T 3ma5_A 45 YHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDAKLK 89 (100)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHH
Confidence 99999999999999999999999999775433 3344444443
No 190
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.73 E-value=5.3e-08 Score=82.86 Aligned_cols=86 Identities=14% Similarity=-0.024 Sum_probs=73.0
Q ss_pred cCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCChh
Q 038048 155 EQEKSRILGNLAWAYMQQNN---FEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMDTS 230 (575)
Q Consensus 155 ~Pd~~~a~~nLG~aY~~qGr---yeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~~~~ 230 (575)
+|+++.++..+|.+++..++ .++|..+|++||+++|++.. .+.||.++..+|+|++|+.+++++++.+|.+++...
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~~~ 81 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDRVT 81 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHH
Confidence 58889999999999987766 79999999999999999999 999999999999999999999999999998543223
Q ss_pred HHHHHHHHHH
Q 038048 231 YSRSFERAIQ 240 (575)
Q Consensus 231 ~l~slerA~e 240 (575)
....+.+|+.
T Consensus 82 i~~~I~~A~~ 91 (93)
T 3bee_A 82 IIESINKAKK 91 (93)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 3344444443
No 191
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.73 E-value=7e-08 Score=79.04 Aligned_cols=87 Identities=10% Similarity=-0.046 Sum_probs=70.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCChhHHHHHHHHHH
Q 038048 163 GNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK--QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQMDTSYSRSFERAIQ 240 (575)
Q Consensus 163 ~nLG~aY~~qGryeEAe~~yrkALeidPdn~~--~~NLA~iy~~qGr~eEAi~lLekALel~P~n~~~~~~l~slerA~e 240 (575)
+++|.+|..+|++++|+.+|+++++++|++.. ++++|.+|..+|++++|+.+|+++++++|++.. .+ ......+
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~--~~~~~~~ 79 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPA--LQ--ARKMVMD 79 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH--HH--HHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH--HH--HHHHHHH
Confidence 67899999999999999999999999999976 789999999999999999999999999997651 11 1134445
Q ss_pred HHHHhccccccCc
Q 038048 241 MLTELESPSVLKL 253 (575)
Q Consensus 241 lL~ele~al~~~p 253 (575)
++..++......|
T Consensus 80 a~~~~~~~~~~~p 92 (99)
T 2kc7_A 80 ILNFYNKDMYNQL 92 (99)
T ss_dssp HHHHHCCTTHHHH
T ss_pred HHHHHHHHhccCc
Confidence 5555555554433
No 192
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.72 E-value=3.8e-09 Score=107.96 Aligned_cols=191 Identities=14% Similarity=0.057 Sum_probs=131.1
Q ss_pred HcCChHHHHHHHHHHHHcCCCcHHHHHHH-------HHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhh--H------
Q 038048 66 IDKDPSRAVSLFWAAINAGDRVDSALKDM-------AVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNI--E------ 130 (575)
Q Consensus 66 ~~kd~eeAi~lf~kAL~l~p~~~~Al~nL-------A~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~--~------ 130 (575)
..+|+..|+..|.++++.+|...++|.++ +.++...+++.+++..++++++.....+...+.+. +
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 57899999999999999999999999999 89999999999999887777664332222111100 0
Q ss_pred --HHHHHHhHHHHHHHHhch--------hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-C-HH-HHH
Q 038048 131 --EGIAFAGVKTKMARSQGK--------KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVD-M-NK-QCN 197 (575)
Q Consensus 131 --~a~a~~~nla~al~sqg~--------k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPd-n-~~-~~N 197 (575)
..-.+...++.++...|+ ...+...|++. +++.+|.++++.++|++|+.+|++++...+. . .. +++
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~ 176 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVA 176 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHH
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHH
Confidence 000111122233333333 11233477777 9999999999999999999999988776422 2 23 899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHcCCCCC--Ch------hHHHHHHHHHHHHHHhccccccCccccccc
Q 038048 198 LAICLMHMNRVTEAKSLLQAVKISAGNRQM--DT------SYSRSFERAIQMLTELESPSVLKLTELEVG 259 (575)
Q Consensus 198 LA~iy~~qGr~eEAi~lLekALel~P~n~~--~~------~~l~slerA~elL~ele~al~~~p~~~e~~ 259 (575)
||.++..+|++++|+.+|++++... .++. .+ ..+..+++..++...++......|. .+..
T Consensus 177 LG~al~~LG~~~eAl~~l~~a~~g~-~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~ 244 (282)
T 4f3v_A 177 HGVAAANLALFTEAERRLTEANDSP-AGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVA 244 (282)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTST-TTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhcCC-CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHH
Confidence 9999999999999999999998532 2121 11 1234445556666666666667776 4433
No 193
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.68 E-value=2.7e-08 Score=106.93 Aligned_cols=99 Identities=15% Similarity=0.068 Sum_probs=78.5
Q ss_pred cCChHHHHHHHHHHHHc-----CCCc---HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhH
Q 038048 67 DKDPSRAVSLFWAAINA-----GDRV---DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGV 138 (575)
Q Consensus 67 ~kd~eeAi~lf~kAL~l-----~p~~---~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~n 138 (575)
.|++++|+.+|+++|++ +|++ ..++++||.+|..+|+|++|+.++.++++....+++..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~------------- 377 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVY------------- 377 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSS-------------
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCC-------------
Confidence 46899999999999974 5554 45799999999999999999999777655333222221
Q ss_pred HHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHH
Q 038048 139 KTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLG-----VDMNK 194 (575)
Q Consensus 139 la~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeid-----Pdn~~ 194 (575)
.|+-...++|||.+|..+|+|++|+.+|++||+|. |+++.
T Consensus 378 ----------------Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~ 422 (433)
T 3qww_A 378 ----------------SLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPY 422 (433)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred ----------------ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 33445589999999999999999999999999974 77764
No 194
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.67 E-value=3.8e-07 Score=96.90 Aligned_cols=148 Identities=13% Similarity=0.030 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHcC---ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHC----CCHHHHHHHHhcCHHHHHHHHHHHHHh
Q 038048 56 PYVRAKHIQLIDK---DPSRAVSLFWAAINAGDRVDSALKDMAVVMKQL----DRSDEAIEARSGRIEEEIELLQNKLKN 128 (575)
Q Consensus 56 ~yarA~~l~l~~k---d~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qq----GrydEAie~~~gaLeeAi~lL~~~L~l 128 (575)
.+...+.++...+ ++++|+.+|++++..++....++++||.+|... +++++|+.++..+. .
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~----------- 245 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P----------- 245 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G-----------
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C-----------
Confidence 5555666666677 788888888888888888777778888888665 68888887755543 1
Q ss_pred hHHHHHHHhHHHHHHH---Hhch------hhHHhhcCCcHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhCCCCHH
Q 038048 129 IEEGIAFAGVKTKMAR---SQGK------KIQITVEQEKSRILGNLAWAYMQQN-----NFEMAEQYYRKALSLGVDMNK 194 (575)
Q Consensus 129 ~~~a~a~~~nla~al~---sqg~------k~aL~L~Pd~~~a~~nLG~aY~~qG-----ryeEAe~~yrkALeidPdn~~ 194 (575)
.......+++.++. ..++ -+...++..++.++++||.+|. .| ++++|+.+|++|. ++++.
T Consensus 246 --g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~ 319 (452)
T 3e4b_A 246 --GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVA 319 (452)
T ss_dssp --GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHH
T ss_pred --CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHH
Confidence 01111222222211 1111 0112335567777888887777 55 7888888888877 77777
Q ss_pred -HHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q 038048 195 -QCNLAICLMH----MNRVTEAKSLLQAVKIS 221 (575)
Q Consensus 195 -~~NLA~iy~~----qGr~eEAi~lLekALel 221 (575)
+++||.+|.. ..++++|+.+|+++.+.
T Consensus 320 A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 351 (452)
T 3e4b_A 320 ADYYLGQIYRRGYLGKVYPQKALDHLLTAARN 351 (452)
T ss_dssp HHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence 7788877776 34788888888877663
No 195
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.66 E-value=8.2e-08 Score=102.85 Aligned_cols=113 Identities=14% Similarity=0.060 Sum_probs=87.0
Q ss_pred HHHcCChHHHHHHHHHHHHc-----CCCc---HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHH
Q 038048 64 QLIDKDPSRAVSLFWAAINA-----GDRV---DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAF 135 (575)
Q Consensus 64 ~l~~kd~eeAi~lf~kAL~l-----~p~~---~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~ 135 (575)
+..++++++|+.+|++++.. ++++ ..++.+||.+|..+|+|++|+.++.++++....+++..
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~---------- 366 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS---------- 366 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS----------
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC----------
Confidence 34578999999999999975 4444 45799999999999999999999766554322222111
Q ss_pred HhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH----HHHHHHHHHHc
Q 038048 136 AGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSL-----GVDMNK----QCNLAICLMHM 205 (575)
Q Consensus 136 ~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALei-----dPdn~~----~~NLA~iy~~q 205 (575)
.|+-...++|||.+|..+|+|++|+.+|++|++| -|+++. ..+|+.++.++
T Consensus 367 -------------------Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 367 -------------------HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp -------------------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred -------------------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 3334458999999999999999999999999997 477764 46787777654
No 196
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.66 E-value=3.9e-07 Score=93.70 Aligned_cols=144 Identities=3% Similarity=-0.037 Sum_probs=111.1
Q ss_pred CChHHHHHHHHHHHHcCCCcHHHHHHHHHHH----HHC---CCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHH
Q 038048 68 KDPSRAVSLFWAAINAGDRVDSALKDMAVVM----KQL---DRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKT 140 (575)
Q Consensus 68 kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy----~qq---GrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla 140 (575)
.++++++.++.++|..+|++..+++..+.++ ... ++++++++++...++... .....+....
T Consensus 83 ~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~p-----------kny~aW~~R~ 151 (306)
T 3dra_A 83 RNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDP-----------KNHHVWSYRK 151 (306)
T ss_dssp SCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCT-----------TCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCC-----------CCHHHHHHHH
Confidence 3899999999999999999999999999999 777 788888887555444322 1111121111
Q ss_pred HHHHHhc-----h-----hhHHhhcCCcHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHhCCCCHH-HHHHHHHHH
Q 038048 141 KMARSQG-----K-----KIQITVEQEKSRILGNLAWAYMQQNN------FEMAEQYYRKALSLGVDMNK-QCNLAICLM 203 (575)
Q Consensus 141 ~al~sqg-----~-----k~aL~L~Pd~~~a~~nLG~aY~~qGr------yeEAe~~yrkALeidPdn~~-~~NLA~iy~ 203 (575)
-++...+ + ...+..+|.+..+|++.+.++...|+ +++++.++.++|.++|+|.. +++++.++.
T Consensus 152 ~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~ 231 (306)
T 3dra_A 152 WLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHE 231 (306)
T ss_dssp HHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Confidence 1111111 1 34678899999999999999999998 99999999999999999999 999999999
Q ss_pred HcCCHHH-HHHHHHHHHHHc
Q 038048 204 HMNRVTE-AKSLLQAVKISA 222 (575)
Q Consensus 204 ~qGr~eE-Ai~lLekALel~ 222 (575)
..|+..+ +..++++++.+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~ 251 (306)
T 3dra_A 232 RFDRSITQLEEFSLQFVDLE 251 (306)
T ss_dssp HTTCCGGGGHHHHHTTEEGG
T ss_pred hcCCChHHHHHHHHHHHhcc
Confidence 9999655 556777777765
No 197
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.65 E-value=2.3e-08 Score=107.16 Aligned_cols=70 Identities=11% Similarity=-0.042 Sum_probs=61.4
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHH----HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 157 EKSRILGNLAWAYMQQNNFEMAEQYYRKALSLG-----VDMNK----QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 157 d~~~a~~nLG~aY~~qGryeEAe~~yrkALeid-----Pdn~~----~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
.-..++++||.+|..+|+|++|+.+|+++|++. |+++. ++|||.+|..+|++++|+.+|++|+++.....
T Consensus 327 ~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~l 405 (429)
T 3qwp_A 327 YQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTH 405 (429)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Confidence 334589999999999999999999999999873 55554 78999999999999999999999999876544
No 198
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.63 E-value=5.9e-07 Score=93.58 Aligned_cols=146 Identities=7% Similarity=-0.045 Sum_probs=111.4
Q ss_pred hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCC--HHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhc
Q 038048 70 PSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDR--SDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQG 147 (575)
Q Consensus 70 ~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGr--ydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg 147 (575)
+++++.++..+|..+|++..+++..+.++...|+ ++++++++...++.... ....+....-++...+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-----------Ny~AW~~R~~vl~~l~ 158 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-----------NFHCWDYRRFVAAQAA 158 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-----------CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-----------CHHHHHHHHHHHHHhC
Confidence 6889999999999999999999999999999995 88888875555443221 1111111111111111
Q ss_pred h---------hhHHhhcCCcHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHH
Q 038048 148 K---------KIQITVEQEKSRILGNLAWAYMQQ--------------NNFEMAEQYYRKALSLGVDMNK-QCNLAICLM 203 (575)
Q Consensus 148 ~---------k~aL~L~Pd~~~a~~nLG~aY~~q--------------GryeEAe~~yrkALeidPdn~~-~~NLA~iy~ 203 (575)
. ...+..+|.+..+|++++.++..+ +.+++++.++.+++.++|++.. ++.+.-++.
T Consensus 159 ~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~ 238 (331)
T 3dss_A 159 VAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLG 238 (331)
T ss_dssp CCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 1 346788999999999999999988 5799999999999999999999 765555544
Q ss_pred Hc-----------CCHHHHHHHHHHHHHHcCCCC
Q 038048 204 HM-----------NRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 204 ~q-----------Gr~eEAi~lLekALel~P~n~ 226 (575)
.. +.+++++.++++++++.|++.
T Consensus 239 ~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~ 272 (331)
T 3dss_A 239 AGSGRCELSVEKSTVLQSELESCKELQELEPENK 272 (331)
T ss_dssp SSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred hccCccccchHHHHHHHHHHHHHHHHHhhCcccc
Confidence 44 468999999999999999763
No 199
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.60 E-value=5.4e-07 Score=92.58 Aligned_cols=100 Identities=11% Similarity=0.019 Sum_probs=81.2
Q ss_pred hhHHhhcCC--cHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCC-HH-HHHHHHHHHH-cCCHHHHHHHHHHH
Q 038048 149 KIQITVEQE--KSRILGNLAWAYMQQ-----NNFEMAEQYYRKALSLGVDM-NK-QCNLAICLMH-MNRVTEAKSLLQAV 218 (575)
Q Consensus 149 k~aL~L~Pd--~~~a~~nLG~aY~~q-----GryeEAe~~yrkALeidPdn-~~-~~NLA~iy~~-qGr~eEAi~lLekA 218 (575)
+++++++|+ +..+|..||.+|... |+.++|+.+|++||+++|+. .. .+.+|..|.. +|++++|..+|+++
T Consensus 187 erAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 187 ERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 467999999 556999999999996 99999999999999999975 77 9999999988 59999999999999
Q ss_pred HHHcCCC-CCCh-hHHHHHHHHHHHHHHhccc
Q 038048 219 KISAGNR-QMDT-SYSRSFERAIQMLTELESP 248 (575)
Q Consensus 219 Lel~P~n-~~~~-~~l~slerA~elL~ele~a 248 (575)
+...|.. ++.. ......++++.+|.++...
T Consensus 267 L~a~p~~~P~~~lan~~~q~eA~~LL~~~~d~ 298 (301)
T 3u64_A 267 LAIDPESVPHNKLLVILSQKRARWLKAHVQDF 298 (301)
T ss_dssp HHCCGGGCSSCHHHHHHHHHHHHHHHHTHHHH
T ss_pred HcCCCCCCCChhHHHHHHHHHHHHHHHHhHHh
Confidence 9998864 4322 1223445677777765543
No 200
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.48 E-value=2.5e-06 Score=102.76 Aligned_cols=164 Identities=12% Similarity=0.036 Sum_probs=96.8
Q ss_pred cHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHH--------HHH-----
Q 038048 55 SPYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEE--------IEL----- 121 (575)
Q Consensus 55 ~~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeA--------i~l----- 121 (575)
..+.+.+..+...|++++|+..|.+| ++..++.++|.++.+.|+|++|++++..+.... +..
T Consensus 1106 ~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl 1180 (1630)
T 1xi4_A 1106 AVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKT 1180 (1630)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhh
Confidence 33444555556666777777777654 445666677777777777777777653322111 000
Q ss_pred -----HHHHHHhhHHHHHHHhHHHHHHHHhch-hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----
Q 038048 122 -----LQNKLKNIEEGIAFAGVKTKMARSQGK-KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGV----- 190 (575)
Q Consensus 122 -----L~~~L~l~~~a~a~~~nla~al~sqg~-k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidP----- 190 (575)
+...+.. .....+.+++..+.+.|+ ..++.. -..+..|..+|.+|.++|++++|+++|++|....+
T Consensus 1181 ~rleele~fI~~--~n~ad~~~iGd~le~eg~YeeA~~~-Y~kA~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~ 1257 (1630)
T 1xi4_A 1181 NRLAELEEFING--PNNAHIQQVGDRCYDEKMYDAAKLL-YNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVC 1257 (1630)
T ss_pred cCHHHHHHHHhC--CCHHHHHHHHHHHHhcCCHHHHHHH-HHhhhHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHH
Confidence 0000000 001123456666665555 111111 11134778888888888888888888888855543
Q ss_pred --------------------CCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 191 --------------------DMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 191 --------------------dn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
.+++ ...++..|..+|.++||+.+|+++|.+++.+.
T Consensus 1258 ~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~ 1314 (1630)
T 1xi4_A 1258 FACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHM 1314 (1630)
T ss_pred HHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHh
Confidence 1333 44677788888999999999988888876654
No 201
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.33 E-value=2.6e-06 Score=90.45 Aligned_cols=133 Identities=11% Similarity=0.093 Sum_probs=86.0
Q ss_pred ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCC---CHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHH
Q 038048 69 DPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLD---RSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARS 145 (575)
Q Consensus 69 d~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqG---rydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~s 145 (575)
+.+.|..+++.+...+|. ++++||.+|...| ++++|+.++..+.+... .....+.+++.++..
T Consensus 160 ~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-----------~~a~~~~~Lg~~y~~ 225 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-----------VTAQRVDSVARVLGD 225 (452)
T ss_dssp GHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-----------SCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-----------HHHHHHHHHHHHHhC
Confidence 445555666666555554 7888888888888 88888887655433210 000111122222211
Q ss_pred h----ch------hhHHhhcCCcHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcC-----
Q 038048 146 Q----GK------KIQITVEQEKSRILGNLAWA-Y--MQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMN----- 206 (575)
Q Consensus 146 q----g~------k~aL~L~Pd~~~a~~nLG~a-Y--~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qG----- 206 (575)
. .+ -+...+ |.++.++++||.+ | ...+++++|+.+|++|++. +++. +++||.+|. .|
T Consensus 226 g~~~~~d~~~A~~~~~~aa-~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~ 301 (452)
T 3e4b_A 226 ATLGTPDEKTAQALLEKIA-PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPA 301 (452)
T ss_dssp GGGSSCCHHHHHHHHHHHG-GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCC
T ss_pred CCCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCC
Confidence 1 00 011223 8888888999988 4 5788999999999998855 4677 888998888 56
Q ss_pred CHHHHHHHHHHHH
Q 038048 207 RVTEAKSLLQAVK 219 (575)
Q Consensus 207 r~eEAi~lLekAL 219 (575)
++++|+.+|+++.
T Consensus 302 d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 302 DAKAAEAHFEKAV 314 (452)
T ss_dssp CHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHh
Confidence 8899999998888
No 202
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.28 E-value=1.3e-05 Score=96.73 Aligned_cols=128 Identities=14% Similarity=0.120 Sum_probs=87.0
Q ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHhcC------------------HHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhc
Q 038048 86 RVDSALKDMAVVMKQLDRSDEAIEARSGR------------------IEEEIELLQNKLKNIEEGIAFAGVKTKMARSQG 147 (575)
Q Consensus 86 ~~~~Al~nLA~iy~qqGrydEAie~~~ga------------------LeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg 147 (575)
+.+.+|+.+|.++.+.|+++||+..|.++ +++++..|..+.+..... .....++.++...+
T Consensus 1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKAdD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~-~Idt~LafaYAKl~ 1181 (1630)
T 1xi4_A 1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES-YVETELIFALAKTN 1181 (1630)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc-cccHHHHHHHHhhc
Confidence 44678999999999999999999995443 334444444333211000 00011333333333
Q ss_pred h--hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038048 148 K--KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQCNLAICLMHMNRVTEAKSLLQAVKIS 221 (575)
Q Consensus 148 ~--k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~~~NLA~iy~~qGr~eEAi~lLekALel 221 (575)
+ ...--++..+...+.++|..|...|+|++|..+|.+| ..+..||.+|.++|++++|++.++++...
T Consensus 1182 rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-------~ny~rLA~tLvkLge~q~AIEaarKA~n~ 1250 (1630)
T 1xi4_A 1182 RLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------SNFGRLASTLVHLGEYQAAVDGARKANST 1250 (1630)
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-------hHHHHHHHHHHHhCCHHHHHHHHHHhCCH
Confidence 3 1111123334456778999999999999999999997 13899999999999999999999998543
No 203
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.27 E-value=4.5e-06 Score=85.14 Aligned_cols=162 Identities=8% Similarity=-0.104 Sum_probs=114.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhH
Q 038048 57 YVRAKHIQLIDKDPSRAVSLFWAAINAGDRV------DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIE 130 (575)
Q Consensus 57 yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~------~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~ 130 (575)
+...+.++...|++++|+.+|.+++...+.. ..++..+|.++...|++++|+.++...++...... ...
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~ 132 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREK-----RVF 132 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSS-----CCS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhC-----ccH
Confidence 5566777888999999999999998764432 23567889999999999999999666554332110 000
Q ss_pred HHHHHHhHHHHHHHHhch-h-------hHHh------hcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCH
Q 038048 131 EGIAFAGVKTKMARSQGK-K-------IQIT------VEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGV---DMN 193 (575)
Q Consensus 131 ~a~a~~~nla~al~sqg~-k-------~aL~------L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidP---dn~ 193 (575)
.......+++..+...|+ . .++. -.+....++.++|.+|..+|+|++|..+|++++.+.+ +..
T Consensus 133 ~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 212 (434)
T 4b4t_Q 133 LKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPT 212 (434)
T ss_dssp SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCch
Confidence 011223344444444444 0 0111 1344466999999999999999999999999998853 222
Q ss_pred ----H-HHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Q 038048 194 ----K-QCNLAICLMHMNRVTEAKSLLQAVKISAG 223 (575)
Q Consensus 194 ----~-~~NLA~iy~~qGr~eEAi~lLekALel~P 223 (575)
. +.++|.++...|++++|..+|.++++..+
T Consensus 213 ~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~ 247 (434)
T 4b4t_Q 213 QTVAELDLMSGILHCEDKDYKTAFSYFFESFESYH 247 (434)
T ss_dssp HHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence 2 56889999999999999999999998754
No 204
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.23 E-value=4.3e-07 Score=98.23 Aligned_cols=138 Identities=10% Similarity=0.067 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHH
Q 038048 56 PYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAF 135 (575)
Q Consensus 56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~ 135 (575)
.+...+..++..+++++|+..|.++ .+..++..++.++...|+|++|+.++..+.+.... ...
T Consensus 34 vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~------------~~i 96 (449)
T 1b89_A 34 VWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE------------SYV 96 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc------------chh
Confidence 4445556666777788888777653 23456777777777788888887765444332100 011
Q ss_pred HhHHHHHHHHhch--hhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHH
Q 038048 136 AGVKTKMARSQGK--KIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAK 212 (575)
Q Consensus 136 ~~nla~al~sqg~--k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi 212 (575)
...+..++...|+ ...--++..+..+|+++|..|...|+|++|..+|.++ . +..||.+|.++|++++|+
T Consensus 97 ~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AV 168 (449)
T 1b89_A 97 ETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAV 168 (449)
T ss_dssp ------------CHHHHTTTTTCC----------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHH
Confidence 1112222222222 0001112223348888888888888888888888876 4 778888888888888888
Q ss_pred HHHHHH
Q 038048 213 SLLQAV 218 (575)
Q Consensus 213 ~lLekA 218 (575)
..++++
T Consensus 169 ea~~KA 174 (449)
T 1b89_A 169 DGARKA 174 (449)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 888887
No 205
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.21 E-value=1.4e-05 Score=68.14 Aligned_cols=68 Identities=13% Similarity=0.056 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 159 SRILGNLAWAYMQQNNFEMAEQYYRKALSLG-------VDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 159 ~~a~~nLG~aY~~qGryeEAe~~yrkALeid-------Pdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
+.-++.||..++.+|+|..|+..|++|++.. +.... +.+||.+|.++|++++|+.++++++++.|++.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~ 80 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ 80 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence 3467899999999999999999999999974 22344 88999999999999999999999999999864
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.13 E-value=3e-05 Score=69.13 Aligned_cols=97 Identities=11% Similarity=0.004 Sum_probs=78.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----CCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHH
Q 038048 60 AKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQ----LDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAF 135 (575)
Q Consensus 60 A~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~q----qGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~ 135 (575)
.+.++......++|+.+|+++.+. .+..++++||.+|.. .+++++|+.++..+.
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-------------------- 88 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKAC-------------------- 88 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH--------------------
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHH--------------------
Confidence 555555667888999999999987 568899999999999 899999999854431
Q ss_pred HhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHH-HHHHH
Q 038048 136 AGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQ----QNNFEMAEQYYRKALSLGVDMNK-QCNLA 199 (575)
Q Consensus 136 ~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~----qGryeEAe~~yrkALeidPdn~~-~~NLA 199 (575)
+..++.++++||.+|.. .+++++|+.+|++|.+.. +.. ..+|+
T Consensus 89 -------------------~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~ 136 (138)
T 1klx_A 89 -------------------GLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGILN 136 (138)
T ss_dssp -------------------HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred -------------------cCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence 23557799999999999 999999999999999873 444 55554
No 207
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.10 E-value=5.6e-05 Score=79.27 Aligned_cols=138 Identities=10% Similarity=-0.028 Sum_probs=99.6
Q ss_pred CChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHC-C-CHHHHHHHHhcCHHHHHH---HHHHHHHhhHHHHHHHh-----
Q 038048 68 KDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQL-D-RSDEAIEARSGRIEEEIE---LLQNKLKNIEEGIAFAG----- 137 (575)
Q Consensus 68 kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qq-G-rydEAie~~~gaLeeAi~---lL~~~L~l~~~a~a~~~----- 137 (575)
.++++++.++.++|..+|++..+++..+.++... + ++++++++....++.... ......-.+... ..+.
T Consensus 103 ~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l-~~~~~~~~~ 181 (349)
T 3q7a_A 103 KSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHF-STLGRISEA 181 (349)
T ss_dssp CCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHH-HHTTCCCHH
T ss_pred hhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-ccccccchh
Confidence 3699999999999999999999999999999998 8 888888875444332111 000000000000 0000
Q ss_pred HHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCH
Q 038048 138 VKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNN-------FEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRV 208 (575)
Q Consensus 138 nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGr-------yeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~ 208 (575)
.+...+... ...+..+|.+..+|++.+.++..+++ +++++.++.+++.++|+|.. ++++..++...|+.
T Consensus 182 ~~~eELe~~--~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 182 QWGSELDWC--NEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHH--HHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHH--HHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence 000000000 34678899999999999999999997 89999999999999999999 99999999888875
No 208
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.08 E-value=7.5e-06 Score=76.52 Aligned_cols=74 Identities=9% Similarity=0.139 Sum_probs=66.9
Q ss_pred hhcCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 153 TVEQEKSRILGNLAWAYMQQN---NFEMAEQYYRKALSLG-V-DMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 153 ~L~Pd~~~a~~nLG~aY~~qG---ryeEAe~~yrkALeid-P-dn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
..++.+..+.+++|+++.+.. +.++|+.+|+++++.+ | ++.+ +|+||..|.++|+|++|..+++++|+++|++.
T Consensus 26 ~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~ 105 (152)
T 1pc2_A 26 AAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNN 105 (152)
T ss_dssp HTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCH
T ss_pred ccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence 446778889999999999998 7779999999999999 7 4456 99999999999999999999999999999875
No 209
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.06 E-value=3e-06 Score=79.66 Aligned_cols=89 Identities=8% Similarity=-0.074 Sum_probs=71.3
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCH----------HHHHHHHHHHHHHcCCCCCCh----hHHHH
Q 038048 170 MQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRV----------TEAKSLLQAVKISAGNRQMDT----SYSRS 234 (575)
Q Consensus 170 ~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~----------eEAi~lLekALel~P~n~~~~----~~l~s 234 (575)
.+.++|++|+..|++|++++|+++. ++|+|.+|..+|++ ++|+..|+++|+++|++..+. .....
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 4667899999999999999999999 99999999999886 599999999999999875311 11122
Q ss_pred -----------HHHHHHHHHHhccccccCcccccc
Q 038048 235 -----------FERAIQMLTELESPSVLKLTELEV 258 (575)
Q Consensus 235 -----------lerA~elL~ele~al~~~p~~~e~ 258 (575)
+++..+++..++.++.++|.....
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY 127 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence 246777777788888888876533
No 210
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.05 E-value=3.2e-05 Score=65.83 Aligned_cols=82 Identities=17% Similarity=0.140 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHH
Q 038048 88 DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAW 167 (575)
Q Consensus 88 ~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~ 167 (575)
+.-.+.||..+.++|+|+.|+..+..++.. +... .........++.+||.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~----~~~~--------------------------~~~~~~~~~i~~~L~~ 54 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQ----LDEG--------------------------EISTIDKVSVLDYLSY 54 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----HHTT--------------------------CCCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHh----hhcc--------------------------CCCcccHHHHHHHHHH
Confidence 345678999999999999999996554321 0000 0012345679999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHH
Q 038048 168 AYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLA 199 (575)
Q Consensus 168 aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA 199 (575)
+|.++|++++|+.+|++|++++|++.. ..|++
T Consensus 55 ~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 55 AVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 999999999999999999999999998 88887
No 211
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.02 E-value=4e-05 Score=79.20 Aligned_cols=137 Identities=11% Similarity=0.077 Sum_probs=91.3
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHH--HHHHHHHHhhHHHHHHHhHHHHHHHHhch--
Q 038048 73 AVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEI--ELLQNKLKNIEEGIAFAGVKTKMARSQGK-- 148 (575)
Q Consensus 73 Ai~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi--~lL~~~L~l~~~a~a~~~nla~al~sqg~-- 148 (575)
|+..|++.+..++....+++.+|.+|...|++++|+.++.+.++... ..+ ........++...|+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~l-----------ea~~l~vqi~L~~~r~d 153 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTT-----------ELLLLAIEVALLNNNVS 153 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHH-----------HHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcH-----------HHHHHHHHHHHHCCCHH
Confidence 88889888877656667778999999999999999998654322100 001 111111112222222
Q ss_pred ------hhHHhhcCC----cHHHHHHH--HHHHHHcC--CHHHHHHHHHHHHHhCCCC--HH-HHHHHHHHHHcCCHHHH
Q 038048 149 ------KIQITVEQE----KSRILGNL--AWAYMQQN--NFEMAEQYYRKALSLGVDM--NK-QCNLAICLMHMNRVTEA 211 (575)
Q Consensus 149 ------k~aL~L~Pd----~~~a~~nL--G~aY~~qG--ryeEAe~~yrkALeidPdn--~~-~~NLA~iy~~qGr~eEA 211 (575)
+.....+|+ +..+..+| |++.+..| ++++|..+|+++.+..|+. .. .+| +++.+|++++|
T Consensus 154 ~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eA 230 (310)
T 3mv2_B 154 TASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEA 230 (310)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHH
T ss_pred HHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHH
Confidence 112345663 23344555 56677777 9999999999998888873 23 445 89999999999
Q ss_pred HHHHHHHHHHcC
Q 038048 212 KSLLQAVKISAG 223 (575)
Q Consensus 212 i~lLekALel~P 223 (575)
+..++.+++..|
T Consensus 231 e~~L~~l~~~~p 242 (310)
T 3mv2_B 231 QGIVELLLSDYY 242 (310)
T ss_dssp HHHHHHHHSHHH
T ss_pred HHHHHHHHHhcc
Confidence 999998888753
No 212
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.97 E-value=4.7e-05 Score=71.16 Aligned_cols=88 Identities=17% Similarity=0.099 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCC---CHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHh
Q 038048 70 PSRAVSLFWAAINAGDRVDSALKDMAVVMKQLD---RSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQ 146 (575)
Q Consensus 70 ~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqG---rydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sq 146 (575)
...+...|..++..++....+.+++|.++.+.+ ++++|+.++...
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~l-------------------------------- 61 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEEL-------------------------------- 61 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH--------------------------------
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH--------------------------------
Confidence 356778888888888888999999999999988 566888773321
Q ss_pred chhhHHhhc-C-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048 147 GKKIQITVE-Q-EKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK 194 (575)
Q Consensus 147 g~k~aL~L~-P-d~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~ 194 (575)
+..+ | +..+++|+||..|+++|+|++|..+++++|+++|+|..
T Consensus 62 -----l~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~Q 106 (152)
T 1pc2_A 62 -----LPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQ 106 (152)
T ss_dssp -----HHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHH
T ss_pred -----HhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Confidence 1223 4 34569999999999999999999999999999999986
No 213
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.96 E-value=2.7e-05 Score=66.04 Aligned_cols=73 Identities=15% Similarity=0.053 Sum_probs=63.4
Q ss_pred CCCcHHHHHHHHHHHHHCCC---HHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHH
Q 038048 84 GDRVDSALKDMAVVMKQLDR---SDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSR 160 (575)
Q Consensus 84 ~p~~~~Al~nLA~iy~qqGr---ydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~ 160 (575)
+|+++.++..+|.++...+. .++|+.++.+ ++.++|++..
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~-------------------------------------AL~~dp~~~r 44 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQ-------------------------------------ALQLEPYNEA 44 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHH-------------------------------------HHHHCTTCHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH-------------------------------------HHHHCcCCHH
Confidence 57788999999999987666 6888887433 3677999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 038048 161 ILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMN 193 (575)
Q Consensus 161 a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~ 193 (575)
+++.||.++++.|+|++|+.+|+++++.+|+.+
T Consensus 45 A~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 45 ALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 999999999999999999999999999999943
No 214
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.83 E-value=2.3e-05 Score=84.84 Aligned_cols=194 Identities=11% Similarity=0.066 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHH---HhhHHH
Q 038048 56 PYVRAKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKL---KNIEEG 132 (575)
Q Consensus 56 ~yarA~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L---~l~~~a 132 (575)
.|...+..+...|++++|+.+|+.+++..++ +.+...|+.+|.+.|+++++++++.+--..+...++... .....+
T Consensus 63 ~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA 141 (449)
T 1b89_A 63 SYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAA 141 (449)
T ss_dssp -----------------------------------------------CHHHHTTTTTCC----------------CTTTH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHH
Confidence 4455555566688999999999998875333 566788999999999999988875442111111111111 000000
Q ss_pred ------HHHHhHHHHHHHHhch-hhHHhh--cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 038048 133 ------IAFAGVKTKMARSQGK-KIQITV--EQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQCNLAICLM 203 (575)
Q Consensus 133 ------~a~~~nla~al~sqg~-k~aL~L--~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~~~NLA~iy~ 203 (575)
...+.+++.++...|+ ..++.. .-.++.+|..++.++...|+++.|..+... |.++|+. ...+..+|.
T Consensus 142 ~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~--l~~lv~~Ye 218 (449)
T 1b89_A 142 KLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE--LEELINYYQ 218 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH--HHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh--HHHHHHHHH
Confidence 0112333333333333 000000 012334444444444444455444444443 1122222 345678899
Q ss_pred HcCCHHHHHHHHHHHHHHcCCCCCChhHH------HHHHHHHHHHHHhccccccCc
Q 038048 204 HMNRVTEAKSLLQAVKISAGNRQMDTSYS------RSFERAIQMLTELESPSVLKL 253 (575)
Q Consensus 204 ~qGr~eEAi~lLekALel~P~n~~~~~~l------~slerA~elL~ele~al~~~p 253 (575)
+.|++++|+.+|++++.+++.+.+.-..+ =.-++..+.+..+.+.+.+.+
T Consensus 219 k~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k 274 (449)
T 1b89_A 219 DRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPK 274 (449)
T ss_dssp HTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHH
T ss_pred HCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcH
Confidence 99999999999999999886543210000 012556666776666666555
No 215
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.77 E-value=0.00053 Score=77.66 Aligned_cols=183 Identities=9% Similarity=-0.037 Sum_probs=120.6
Q ss_pred hhhhHh-hcCCCCCcHHHHHHHHHHHcCChHHHH-HHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHH
Q 038048 42 DIFHVI-HKVPSGDSPYVRAKHIQLIDKDPSRAV-SLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEI 119 (575)
Q Consensus 42 e~y~~~-~~~ps~d~~yarA~~l~l~~kd~eeAi-~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi 119 (575)
..|... ...|....-+..........++.++|. ..|.+|+...|.....+..++.++...|++++|.+++...++.-.
T Consensus 330 ~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~ 409 (679)
T 4e6h_A 330 YVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIH 409 (679)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 345433 233333333444445556677888997 999999999999888899999999999999999999766655321
Q ss_pred HHHH---HH-------HHhhH-HHHHHHhHHHHHHHHhch--------hhHHhh-cCCcHHHHHHHHHHHHHcC-CHHHH
Q 038048 120 ELLQ---NK-------LKNIE-EGIAFAGVKTKMARSQGK--------KIQITV-EQEKSRILGNLAWAYMQQN-NFEMA 178 (575)
Q Consensus 120 ~lL~---~~-------L~l~~-~a~a~~~nla~al~sqg~--------k~aL~L-~Pd~~~a~~nLG~aY~~qG-ryeEA 178 (575)
..+. .. +.... .....+-.+.......+. ..++.. .+....+|...|.+-...+ +++.|
T Consensus 410 ~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~A 489 (679)
T 4e6h_A 410 LDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTA 489 (679)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHH
T ss_pred HHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHH
Confidence 1111 00 00000 000111222222221111 123333 2233456766676666665 49999
Q ss_pred HHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 038048 179 EQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGN 224 (575)
Q Consensus 179 e~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~ 224 (575)
..+|+++|+..|++.. +..++..+...|+.+.|..+|++++...|+
T Consensus 490 r~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 490 CKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999999 888999999999999999999999998774
No 216
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.59 E-value=9.9e-05 Score=75.87 Aligned_cols=107 Identities=14% Similarity=-0.016 Sum_probs=85.3
Q ss_pred hHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHC-----CCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHH
Q 038048 70 PSRAVSLFWAAINAGDRV--DSALKDMAVVMKQL-----DRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKM 142 (575)
Q Consensus 70 ~eeAi~lf~kAL~l~p~~--~~Al~nLA~iy~qq-----GrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~a 142 (575)
...|...+++||+++|+. ..++.-||.+|... |+.++|++++.+
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~fer----------------------------- 229 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEH----------------------------- 229 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHH-----------------------------
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHH-----------------------------
Confidence 478999999999999994 55999999999995 999999998544
Q ss_pred HHHhchhhHHhhcCCc-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038048 143 ARSQGKKIQITVEQEK-SRILGNLAWAYMQ-QNNFEMAEQYYRKALSLGVDM-NKQCNLAICLMHMNRVTEAKSLLQAV 218 (575)
Q Consensus 143 l~sqg~k~aL~L~Pd~-~~a~~nLG~aY~~-qGryeEAe~~yrkALeidPdn-~~~~NLA~iy~~qGr~eEAi~lLekA 218 (575)
++.++|+. ..+++..|..|+. +|++++|..++++||.++|.. +. ..+...++-.+|..++.++
T Consensus 230 --------AL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~-----~~lan~~~q~eA~~LL~~~ 295 (301)
T 3u64_A 230 --------LTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPH-----NKLLVILSQKRARWLKAHV 295 (301)
T ss_dssp --------HHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSS-----CHHHHHHHHHHHHHHHHTH
T ss_pred --------HHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCC-----hhHHHHHHHHHHHHHHHHh
Confidence 36789975 8999999999988 599999999999999999885 42 1222333445666666544
No 217
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.08 E-value=0.0011 Score=60.03 Aligned_cols=73 Identities=10% Similarity=0.100 Sum_probs=64.4
Q ss_pred hcCCcHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhC-CCCH-H-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 154 VEQEKSRILGNLAWAYMQQNNFEM---AEQYYRKALSLG-VDMN-K-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 154 L~Pd~~~a~~nLG~aY~~qGryeE---Ae~~yrkALeid-Pdn~-~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
.++....+.+++|+++....+..+ ++.+++..+..+ |... . .+.||..+.++|+|++|..+++.+|++.|+|.
T Consensus 30 ~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~ 108 (126)
T 1nzn_A 30 AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNN 108 (126)
T ss_dssp HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCH
Confidence 356667899999999999998888 999999999987 6333 4 89999999999999999999999999999875
No 218
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.74 E-value=0.011 Score=53.48 Aligned_cols=89 Identities=20% Similarity=0.161 Sum_probs=69.7
Q ss_pred ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHH---HHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHH
Q 038048 69 DPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDE---AIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARS 145 (575)
Q Consensus 69 d~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydE---Aie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~s 145 (575)
....+...|..++..++....+.+++|.++.......+ +|.+. ...+
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lL-----------e~l~------------------- 65 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLL-----------EELL------------------- 65 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHH-----------HHHT-------------------
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHH-----------HHHH-------------------
Confidence 45567788888888888888999999999999887776 44441 1111
Q ss_pred hchhhHHhhc-C-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048 146 QGKKIQITVE-Q-EKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK 194 (575)
Q Consensus 146 qg~k~aL~L~-P-d~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~ 194 (575)
..+ | ..-+.++.||..++++|+|++|..+++..|+++|+|..
T Consensus 66 -------~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~Q 109 (126)
T 1nzn_A 66 -------PKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQ 109 (126)
T ss_dssp -------TTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred -------hcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHH
Confidence 111 2 23358999999999999999999999999999999987
No 219
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=96.68 E-value=0.024 Score=61.59 Aligned_cols=117 Identities=12% Similarity=0.108 Sum_probs=93.3
Q ss_pred ChHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhc
Q 038048 69 DPSRAVSLFWAAINAGDR-VDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQG 147 (575)
Q Consensus 69 d~eeAi~lf~kAL~l~p~-~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg 147 (575)
+.+.|..+|.+....+-. +..+|+.|-..|.+.|++++|+.++..- ..
T Consensus 85 ~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M-----------------------------~~-- 133 (501)
T 4g26_A 85 GLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQM-----------------------------KA-- 133 (501)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHH-----------------------------HH--
T ss_pred hHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-----------------------------HH--
Confidence 368899999988776422 3568889999999999999999873220 00
Q ss_pred hhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038048 148 KKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSL--GVDMNKQCNLAICLMHMNRVTEAKSLLQAVKIS 221 (575)
Q Consensus 148 ~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALei--dPdn~~~~NLA~iy~~qGr~eEAi~lLekALel 221 (575)
.-+.|+ ..+|+.|-..|.+.|++++|..+|++..+. .|+...+..|-.+|.+.|+.++|..+|++..+.
T Consensus 134 ----~g~~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 134 ----FGIQPR-LRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp ----TTCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----cCCCCc-cceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 112343 447888899999999999999999999875 576666888999999999999999999998775
No 220
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.61 E-value=0.0083 Score=56.78 Aligned_cols=59 Identities=19% Similarity=0.266 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC----------------------HH-HHHHHHHHHHcCCHHHHHH
Q 038048 160 RILGNLAWAYMQQNNFEMAEQYYRKALSLG---VDM----------------------NK-QCNLAICLMHMNRVTEAKS 213 (575)
Q Consensus 160 ~a~~nLG~aY~~qGryeEAe~~yrkALeid---Pdn----------------------~~-~~NLA~iy~~qGr~eEAi~ 213 (575)
.++..+|++++.+|+|..|+.+|++||.+. +.+ .+ .+.+|.||.++|++++|+.
T Consensus 64 ~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~ 143 (167)
T 3ffl_A 64 QLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIA 143 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHH
Confidence 488999999999999999999999998753 111 14 6889999999999999999
Q ss_pred HHHHH
Q 038048 214 LLQAV 218 (575)
Q Consensus 214 lLekA 218 (575)
.++.+
T Consensus 144 ~Le~I 148 (167)
T 3ffl_A 144 ILDGI 148 (167)
T ss_dssp HHHTS
T ss_pred HHhcC
Confidence 98753
No 221
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.60 E-value=0.01 Score=54.88 Aligned_cols=71 Identities=11% Similarity=0.151 Sum_probs=63.4
Q ss_pred CCcHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCCCCHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 156 QEKSRILGNLAWAYMQQNNFE---MAEQYYRKALSLGVDMNK--QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 156 Pd~~~a~~nLG~aY~~qGrye---EAe~~yrkALeidPdn~~--~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
.-...+.+++|+++..-.+.. +++.+++..+...|.... .+.||..+.++|+|++|..+.+.+|+..|+|.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~ 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 345669999999999987665 799999999999997765 89999999999999999999999999999875
No 222
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.55 E-value=0.015 Score=65.88 Aligned_cols=133 Identities=5% Similarity=-0.038 Sum_probs=99.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHCCC-HHHHHHHHhcCHHHHHHHHHHHHHhhHHHHH
Q 038048 57 YVRAKHIQLIDKDPSRAVSLFWAAINA-GDRVDSALKDMAVVMKQLDR-SDEAIEARSGRIEEEIELLQNKLKNIEEGIA 134 (575)
Q Consensus 57 yarA~~l~l~~kd~eeAi~lf~kAL~l-~p~~~~Al~nLA~iy~qqGr-ydEAie~~~gaLeeAi~lL~~~L~l~~~a~a 134 (575)
+..........++.+.|..+|.+|++. .+.....+...|.+....++ ++.|..++...
T Consensus 437 Wi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~-------------------- 496 (679)
T 4e6h_A 437 YCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELG-------------------- 496 (679)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHH--------------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHH--------------------
Confidence 333334444557788999999999887 43344555555666655544 78888774332
Q ss_pred HHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CH-H-HHHHHHHHHHcCCHHH
Q 038048 135 FAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVD--MN-K-QCNLAICLMHMNRVTE 210 (575)
Q Consensus 135 ~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPd--n~-~-~~NLA~iy~~qGr~eE 210 (575)
+...|++...+...+......|+.+.|..+|++|+...|+ .. . +..+...-...|..+.
T Consensus 497 -----------------Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~ 559 (679)
T 4e6h_A 497 -----------------LKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNS 559 (679)
T ss_dssp -----------------HHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHH
T ss_pred -----------------HHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 3345777778888888889999999999999999999884 33 3 6677788889999999
Q ss_pred HHHHHHHHHHHcCCCC
Q 038048 211 AKSLLQAVKISAGNRQ 226 (575)
Q Consensus 211 Ai~lLekALel~P~n~ 226 (575)
+..+++++++..|++.
T Consensus 560 ~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 560 VRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHhCCCCc
Confidence 9999999999999764
No 223
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.53 E-value=0.0072 Score=63.91 Aligned_cols=75 Identities=19% Similarity=0.076 Sum_probs=64.2
Q ss_pred HcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHH
Q 038048 82 NAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRI 161 (575)
Q Consensus 82 ~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a 161 (575)
..+|..+.++..+|.++...|++++|+....+ ++.++|+ ..+
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~r-------------------------------------Al~Ln~s-~~a 312 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINT-------------------------------------GIDLEMS-WLN 312 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHH-------------------------------------HHHHCCC-HHH
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHH-------------------------------------HHhcCCC-HHH
Confidence 45688888999999999999999999998433 3455664 567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048 162 LGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK 194 (575)
Q Consensus 162 ~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~ 194 (575)
|..+|.++...|++++|++.|.+|+.++|....
T Consensus 313 ~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 313 YVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 889999999999999999999999999998876
No 224
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.42 E-value=0.012 Score=53.86 Aligned_cols=68 Identities=12% Similarity=0.154 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCCCHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 159 SRILGNLAWAYMQQNNF---EMAEQYYRKALSLGVDMNK--QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 159 ~~a~~nLG~aY~~qGry---eEAe~~yrkALeidPdn~~--~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
..+.+++|+++.+-.+. .+++.+++..+...|.... ++.||..+.++|+|++|..+.+.+|++.|+|.
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 46889999999988766 4699999999999997665 99999999999999999999999999999875
No 225
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=95.99 E-value=0.11 Score=56.23 Aligned_cols=130 Identities=12% Similarity=0.058 Sum_probs=88.2
Q ss_pred HHcCChHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHH
Q 038048 65 LIDKDPSRAVSLFWAAINAGDR-VDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMA 143 (575)
Q Consensus 65 l~~kd~eeAi~lf~kAL~l~p~-~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al 143 (575)
...|++++|+.+|......+-. +..+|+.|-.++...+...++.. .+.++.+..++.....
T Consensus 37 ~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~--~~~l~~A~~lf~~M~~---------------- 98 (501)
T 4g26_A 37 SKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSP--NPGLSRGFDIFKQMIV---------------- 98 (501)
T ss_dssp TTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSC--CHHHHHHHHHHHHHHH----------------
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhh--cchHHHHHHHHHHHHH----------------
Confidence 4568999999999988876422 23456666666665555332211 0111222222222110
Q ss_pred HHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038048 144 RSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSL--GVDMNKQCNLAICLMHMNRVTEAKSLLQAVKIS 221 (575)
Q Consensus 144 ~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALei--dPdn~~~~NLA~iy~~qGr~eEAi~lLekALel 221 (575)
.-+.|+ ..+|+.|-.+|.+.|++++|+.+|++..+. .|+...+..|-..|.+.|++++|..+|++..+.
T Consensus 99 --------~G~~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 99 --------DKVVPN-EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES 169 (501)
T ss_dssp --------TTCCCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred --------hCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 122343 447899999999999999999999998875 566555888889999999999999999998874
No 226
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=95.67 E-value=0.3 Score=52.65 Aligned_cols=47 Identities=11% Similarity=-0.008 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHH
Q 038048 71 SRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEE 117 (575)
Q Consensus 71 eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLee 117 (575)
+.....|+++|...|..+..|...+..+.+.|+.++|..++..++..
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 45678999999999999999999999999999999999887665544
No 227
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.29 E-value=0.22 Score=57.21 Aligned_cols=58 Identities=17% Similarity=0.221 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHH
Q 038048 160 RILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQA 217 (575)
Q Consensus 160 ~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLek 217 (575)
..+..-+..+...|+|+-|+.+.++|+.+-|+... |+.|+.+|..+|+|+.|+-.++.
T Consensus 338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 338 DLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 35555678888999999999999999999999999 99999999999999999976553
No 228
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.82 E-value=0.19 Score=47.02 Aligned_cols=64 Identities=17% Similarity=0.092 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048 161 ILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNR 225 (575)
Q Consensus 161 a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n 225 (575)
+|...|.. ...++.++|.+.|+.++.+...++. +...|..-..+|+.+.|.+++.+++...|..
T Consensus 63 LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 63 IQVRFAEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 55556643 6679999999999999999888977 9999999999999999999999999988753
No 229
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.62 E-value=0.86 Score=50.06 Aligned_cols=100 Identities=15% Similarity=0.181 Sum_probs=61.3
Q ss_pred HHHHHcCChHHHHH-HHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHH
Q 038048 62 HIQLIDKDPSRAVS-LFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKT 140 (575)
Q Consensus 62 ~l~l~~kd~eeAi~-lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla 140 (575)
...+..+++++|.. ++. .-++ ...+..++..+...|.+++|+......... +...+ ..+++.
T Consensus 607 ~~~~~~~~~~~a~~~~l~----~i~~-~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~----f~~~l--------~~~~~~ 669 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLP----NVEG-KDSLTKIARFLEGQEYYEEALNISPDQDQK----FELAL--------KVGQLT 669 (814)
T ss_dssp HHHHHTTCHHHHHHHTGG----GCCC-HHHHHHHHHHHHHTTCHHHHHHHCCCHHHH----HHHHH--------HHTCHH
T ss_pred hHHHHhCCHHHHHHHHHh----cCCc-hHHHHHHHHHHHhCCChHHheecCCCcchh----eehhh--------hcCCHH
Confidence 34567889999876 441 0010 122356778889999999999874321100 11111 112222
Q ss_pred HHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038048 141 KMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKA 185 (575)
Q Consensus 141 ~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkA 185 (575)
.++. +...-++...|.+||..+.+.|+++.|+.+|.++
T Consensus 670 ~A~~-------~~~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 670 LARD-------LLTDESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHH-------HHTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHH-------HHHhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 2211 2223456779999999999999999999999985
No 230
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.57 E-value=0.18 Score=52.89 Aligned_cols=61 Identities=11% Similarity=-0.090 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038048 161 ILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKIS 221 (575)
Q Consensus 161 a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel 221 (575)
+...++.++...|++.+|+..+++++..+|-+.. +..|-.+|...|+..+|+..|+++...
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~ 234 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTT 234 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5567888999999999999999999999999998 889999999999999999999987664
No 231
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.29 E-value=0.37 Score=45.52 Aligned_cols=130 Identities=11% Similarity=-0.107 Sum_probs=76.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHc---CCCc------HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhH
Q 038048 60 AKHIQLIDKDPSRAVSLFWAAINA---GDRV------DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIE 130 (575)
Q Consensus 60 A~~l~l~~kd~eeAi~lf~kAL~l---~p~~------~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~ 130 (575)
-....+..+.++.|+.+...++.. +++. ..++..+|.+++..++|..|+..|..++.....+.+..-.
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~--- 102 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV--- 102 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc---
Confidence 334456778999999998887654 3332 2478899999999999999999977765532211111100
Q ss_pred HHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHH
Q 038048 131 EGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICL 202 (575)
Q Consensus 131 ~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy 202 (575)
.... + ...+.. .... .+.+.++-+.++.+|.++|++++|+..++.. -..-..+. ...||.+|
T Consensus 103 --~~~~---~-~~ss~p--~s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I-p~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 103 --RPST---G-NSASTP--QSQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGI-PSRQRTPKINMLLANLY 165 (167)
T ss_dssp ----------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS-CGGGCCHHHHHHHHHHC
T ss_pred --cccc---c-ccCCCc--cccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcC-CchhcCHHHHHHHHHHh
Confidence 0000 0 000000 0011 1345568899999999999999999986542 11222333 44555554
No 232
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=93.12 E-value=0.72 Score=50.70 Aligned_cols=93 Identities=19% Similarity=0.071 Sum_probs=52.9
Q ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHhcC--HHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHH
Q 038048 86 RVDSALKDMAVVMKQLDRSDEAIEARSGR--IEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILG 163 (575)
Q Consensus 86 ~~~~Al~nLA~iy~qqGrydEAie~~~ga--LeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~ 163 (575)
+....|..||..+.+.|+++.|+.+|... +..... +.....+...+.
T Consensus 679 ~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~-------------------------------l~~~~~~~~~~~ 727 (814)
T 3mkq_A 679 SAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFL-------------------------------LHSSFNNKEGLV 727 (814)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHH-------------------------------HHHHTTCHHHHH
T ss_pred CcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHH-------------------------------HHHHcCCHHHHH
Confidence 34567788888888888888888885442 111000 011122333445
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHH
Q 038048 164 NLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQA 217 (575)
Q Consensus 164 nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLek 217 (575)
.++.+....|++..|..+|.+. . .-....+|.+.+++++|+.+-++
T Consensus 728 ~~~~~a~~~~~~~~A~~~~~~~--------g~~~~a~~~~~~~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 728 TLAKDAETTGKFNLAFNAYWIA--------GDIQGAKDLLIKSQRFSEAAFLGST 774 (814)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH--------TCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCchHHHHHHHHHc--------CCHHHHHHHHHHcCChHHHHHHHHH
Confidence 5666666666666666555441 1 22334456677777777776554
No 233
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=93.09 E-value=1.7 Score=46.76 Aligned_cols=51 Identities=8% Similarity=-0.104 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 175 FEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 175 yeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
.......|+++|...|..+. +++++..+..+|+.++|..+|++++.. |.+.
T Consensus 195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~ 246 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGM 246 (493)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSS
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcH
Confidence 34567788888888888888 888888888888888888888888888 7653
No 234
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=92.84 E-value=0.29 Score=53.48 Aligned_cols=62 Identities=21% Similarity=0.058 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 038048 161 ILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISA 222 (575)
Q Consensus 161 a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~ 222 (575)
.+..||++......+..|..+|.+|+.+.|++.. ++.||.+...+|+.-+|+-+|-+++...
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~ 216 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK 216 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcC
Confidence 6788999999999999999999999999999999 9999999999999999999999998764
No 235
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.75 E-value=1.9 Score=39.79 Aligned_cols=75 Identities=9% Similarity=0.111 Sum_probs=55.8
Q ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcC-CcHHHHHH
Q 038048 86 RVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQ-EKSRILGN 164 (575)
Q Consensus 86 ~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~P-d~~~a~~n 164 (575)
-...+.+++|.++......++-..- +.++...+ ...| ..-+.++.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~G--------I~LLe~l~--------------------------~~~~~~~RdcLYy 82 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLG--------VKILTDIY--------------------------KEAESRRRECLYY 82 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHH--------HHHHHHHH--------------------------HHCCSTHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHH--------HHHHHHHH--------------------------hcCccchhHHHHH
Confidence 4567889999999998876654322 12222211 1234 33458999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048 165 LAWAYMQQNNFEMAEQYYRKALSLGVDMNK 194 (575)
Q Consensus 165 LG~aY~~qGryeEAe~~yrkALeidPdn~~ 194 (575)
||..++++|+|.+|..+.+..|++.|+|..
T Consensus 83 LAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 83 LTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 999999999999999999999999999986
No 236
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.71 E-value=1.1 Score=40.92 Aligned_cols=74 Identities=9% Similarity=0.114 Sum_probs=54.5
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCC-cHHHHHHH
Q 038048 87 VDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQE-KSRILGNL 165 (575)
Q Consensus 87 ~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd-~~~a~~nL 165 (575)
...+.+++|.++......++-..- +.+|...+ ..+|. .-+.++.|
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~G--------I~LLe~l~--------------------------~~~~~~~Rd~LYyL 84 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLG--------VKILTDIY--------------------------KEAESRRRECLYYL 84 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHH--------HHHHHHHH--------------------------HHCGGGHHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHH--------HHHHHHHH--------------------------hcCcchhHHHHHHH
Confidence 467888999999988776543221 22222211 12342 34589999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048 166 AWAYMQQNNFEMAEQYYRKALSLGVDMNK 194 (575)
Q Consensus 166 G~aY~~qGryeEAe~~yrkALeidPdn~~ 194 (575)
|..+.++|+|++|..+.+.+|++.|+|..
T Consensus 85 Avg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 85 TIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 99999999999999999999999999997
No 237
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=92.00 E-value=4.2 Score=38.53 Aligned_cols=47 Identities=6% Similarity=-0.138 Sum_probs=39.0
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcC
Q 038048 63 IQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGR 114 (575)
Q Consensus 63 l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~ga 114 (575)
+++..|+++.|.++.+.. ++...|..||...+.+|+++-|+.+|...
T Consensus 14 LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 457789999998886543 45678999999999999999999997654
No 238
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=90.38 E-value=5.4 Score=38.34 Aligned_cols=112 Identities=10% Similarity=-0.052 Sum_probs=78.1
Q ss_pred cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHh
Q 038048 67 DKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQ 146 (575)
Q Consensus 67 ~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sq 146 (575)
-.|++.++-+-.-.+...| +-...+++++.-.|.|..|+-+..
T Consensus 15 Y~dYdt~~fLsa~L~~~~~---eY~lL~~I~LyyngEY~R~Lf~L~---------------------------------- 57 (242)
T 3kae_A 15 YRDYETAIFLAACLLPCKP---EYRMLMSIVLYLNGEYTRALFHLH---------------------------------- 57 (242)
T ss_dssp TTCHHHHHHHHHHHC-------CTHHHHHHHHHHTTCHHHHHHHHH----------------------------------
T ss_pred cccccHHHHHHHHHccCCh---HHHhhhhhhhhhcchHhHHHHHHH----------------------------------
Confidence 3577776532221222222 344567888888899888886621
Q ss_pred chhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--h---------------CCCCHH--HHHHHHHHHHcCC
Q 038048 147 GKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALS--L---------------GVDMNK--QCNLAICLMHMNR 207 (575)
Q Consensus 147 g~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALe--i---------------dPdn~~--~~NLA~iy~~qGr 207 (575)
+-+-.++.+.-..+|....+|..|+.+++..|+ + +|.+.+ ...+|.++...|.
T Consensus 58 --------~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~ 129 (242)
T 3kae_A 58 --------KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGY 129 (242)
T ss_dssp --------TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTC
T ss_pred --------hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcC
Confidence 223345667778899999999999999999993 3 245555 4568999999999
Q ss_pred HHHHHHHHHHHHHHcC
Q 038048 208 VTEAKSLLQAVKISAG 223 (575)
Q Consensus 208 ~eEAi~lLekALel~P 223 (575)
.+||+.++.......+
T Consensus 130 r~EaI~y~~~Sf~~~~ 145 (242)
T 3kae_A 130 REEGIGHYVRSFGKSF 145 (242)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred HHHhhhHhhhhcCCcc
Confidence 9999999998888765
No 239
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=89.10 E-value=9.7 Score=36.61 Aligned_cols=108 Identities=10% Similarity=0.024 Sum_probs=70.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhH-HHHHHHhH
Q 038048 60 AKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIE-EGIAFAGV 138 (575)
Q Consensus 60 A~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~-~a~a~~~n 138 (575)
..++..+.|.+..|+-++- .-+...+.|.-+.+|....+|..|+......++ ..++..+ .+..
T Consensus 39 ~~I~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~-------~kvd~d~~~d~~---- 102 (242)
T 3kae_A 39 MSIVLYLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDYKKAIKSLESILE-------GKVERDPDVDAR---- 102 (242)
T ss_dssp HHHHHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-------TCSBCCCCCCHH----
T ss_pred hhhhhhhcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cccccCcccccc----
Confidence 4466788899988875552 234456677779999999999999987322111 0000000 0000
Q ss_pred HHHHHHHhchhhHHhhcCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 038048 139 KTKMARSQGKKIQITVEQEKSR-ILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMN 193 (575)
Q Consensus 139 la~al~sqg~k~aL~L~Pd~~~-a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~ 193 (575)
-...-++|.+.+ .+..+|.++.+.|+-+||+.+|.....++|=+.
T Consensus 103 ----------~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~ 148 (242)
T 3kae_A 103 ----------IQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFS 148 (242)
T ss_dssp ----------HHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred ----------cceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccc
Confidence 001245777777 556669999999999999999999888765443
No 240
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.90 E-value=0.78 Score=48.59 Aligned_cols=101 Identities=14% Similarity=0.088 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHH
Q 038048 88 DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAW 167 (575)
Q Consensus 88 ~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~ 167 (575)
..++..||..|.+.|++++|.+++....+. ..-..+-.+++..+..
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~----------------------------------~~~~~~kid~~l~~ir 176 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSK----------------------------------AISTGAKIDVMLTIAR 176 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHH----------------------------------HTCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------------------------cCChHHHHHHHHHHHH
Confidence 347789999999999999999985442111 0112233457888889
Q ss_pred HHHHcCCHHHHHHHHHHHHHhC---CCCHH----HHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 038048 168 AYMQQNNFEMAEQYYRKALSLG---VDMNK----QCNLAICLMHMNRVTEAKSLLQAVKISA 222 (575)
Q Consensus 168 aY~~qGryeEAe~~yrkALeid---Pdn~~----~~NLA~iy~~qGr~eEAi~lLekALel~ 222 (575)
++...+++..|..++.+|..+. ++... ..-.|.+++..++|.+|-.+|-.++...
T Consensus 177 l~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 177 LGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 9999999999999999997763 22221 3456888899999999999999988764
No 241
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=87.20 E-value=4.6 Score=48.07 Aligned_cols=100 Identities=9% Similarity=-0.036 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHH
Q 038048 89 SALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWA 168 (575)
Q Consensus 89 ~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~a 168 (575)
..++.|-..|.+.|+.++|..++..- .... .--+.|+ ..+|+.|-..
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM-----------~~m~---------------------~kG~~Pd-vvTYNtLI~G 174 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVH-----------HGQR---------------------QKRKLLT-LDMYNAVMLG 174 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHH-----------HHSH---------------------HHHTTCC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHH-----------HHHh---------------------hcCCCCC-HhHHHHHHHH
Confidence 36788888999999999999873220 0000 0012233 4488999999
Q ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHcCCH-HHHHHHHHHHHHH
Q 038048 169 YMQQNNFEMAEQYYRKALSL--GVDMNKQCNLAICLMHMNRV-TEAKSLLQAVKIS 221 (575)
Q Consensus 169 Y~~qGryeEAe~~yrkALei--dPdn~~~~NLA~iy~~qGr~-eEAi~lLekALel 221 (575)
|++.|++++|..+|++..+. .||...+..|-.+|.+.|+. ++|..+|++....
T Consensus 175 lck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 175 WARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 99999999999999999874 58777777788899999985 7888999888764
No 242
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=87.13 E-value=15 Score=38.91 Aligned_cols=22 Identities=14% Similarity=0.185 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHH
Q 038048 89 SALKDMAVVMKQLDRSDEAIEA 110 (575)
Q Consensus 89 ~Al~nLA~iy~qqGrydEAie~ 110 (575)
.+.+.||.+|.+.|++++-.++
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~ 41 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADL 41 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHH
Confidence 3567899999999999999888
No 243
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=86.66 E-value=8.1 Score=36.12 Aligned_cols=53 Identities=15% Similarity=0.136 Sum_probs=44.8
Q ss_pred cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCC
Q 038048 155 EQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQCNLAICLMHMNR 207 (575)
Q Consensus 155 ~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~~~NLA~iy~~qGr 207 (575)
...++.+|...|..-.++|+...|...+.+|+...|....++..|..-++.|+
T Consensus 90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~nl~~~~ 142 (161)
T 4h7y_A 90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRNLNLQK 142 (161)
T ss_dssp CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHhhhcCC
Confidence 45556688888999999999999999999999999998877777777666665
No 244
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.01 E-value=3.5 Score=43.96 Aligned_cols=102 Identities=19% Similarity=0.131 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHH
Q 038048 90 ALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAY 169 (575)
Q Consensus 90 Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY 169 (575)
....||.+|...|++.+|..+......+ +++. .. ...-..++.....+|
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~E-----------------t~~~-------~~-------~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVE-----------------TYGS-------ME-------MSEKIQFILEQMELS 187 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------------HCSS-------SC-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH-----------------HHhc-------cc-------HHHHHHHHHHHHHHH
Confidence 4467899999999999999884332110 0000 00 000123666677899
Q ss_pred HHcCCHHHHHHHHHHHHH---hCCCCHH-----HHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 038048 170 MQQNNFEMAEQYYRKALS---LGVDMNK-----QCNLAICLMHMNRVTEAKSLLQAVKISA 222 (575)
Q Consensus 170 ~~qGryeEAe~~yrkALe---idPdn~~-----~~NLA~iy~~qGr~eEAi~lLekALel~ 222 (575)
...+++..|..++.++.. -.+..+. ..-+|.++...++|.+|-.+|..++...
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~ 248 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTD 248 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Confidence 999999999999998743 1233332 3467888999999999999999998853
No 245
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=85.80 E-value=2.4 Score=46.18 Aligned_cols=55 Identities=13% Similarity=0.149 Sum_probs=50.2
Q ss_pred hHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH
Q 038048 150 IQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMH 204 (575)
Q Consensus 150 ~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~ 204 (575)
+++.+.|+...+|+.||.+....|+.-+|+-+|-++|....-++. ..||..++.+
T Consensus 177 ~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 177 HAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 467889999999999999999999999999999999998877888 9999988865
No 246
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=83.26 E-value=2.7 Score=42.49 Aligned_cols=58 Identities=9% Similarity=-0.019 Sum_probs=54.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048 168 AYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGNR 225 (575)
Q Consensus 168 aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n 225 (575)
.+++.|.+++|++.....++-+|.+.. ...|..+|.-.|+++.|..-++-+.+++|+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 456789999999999999999999999 9999999999999999999999999999864
No 247
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=79.28 E-value=28 Score=35.17 Aligned_cols=47 Identities=19% Similarity=0.127 Sum_probs=43.6
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHH
Q 038048 64 QLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEA 110 (575)
Q Consensus 64 ~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~ 110 (575)
.+..+++++|+......|+.+|.+......|..+|.-.|+++.|...
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~Q 53 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQ 53 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 35678999999999999999999999999999999999999999976
No 248
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.37 E-value=5.6 Score=43.71 Aligned_cols=66 Identities=9% Similarity=0.056 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----H---H-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCC
Q 038048 159 SRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDM----N---K-QCNLAICLMHMNRVTEAKSLLQAVKISAGNRQ 226 (575)
Q Consensus 159 ~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn----~---~-~~NLA~iy~~qGr~eEAi~lLekALel~P~n~ 226 (575)
..+++.|-..|+..+.|++|..+..++. .|.+ . . .+.+|.++.-+++|.+|..+|..|+...|.+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 3466777899999999999999999985 4433 2 2 56789999999999999999999999877653
No 249
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=76.18 E-value=62 Score=33.03 Aligned_cols=65 Identities=6% Similarity=0.028 Sum_probs=41.7
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH----------------Hh---CCCCHH-HHHH-HHHHHHcCCHHHHHHHH
Q 038048 157 EKSRILGNLAWAYMQQNNFEMAEQYYRKAL----------------SL---GVDMNK-QCNL-AICLMHMNRVTEAKSLL 215 (575)
Q Consensus 157 d~~~a~~nLG~aY~~qGryeEAe~~yrkAL----------------ei---dPdn~~-~~NL-A~iy~~qGr~eEAi~lL 215 (575)
.++..+..+|..|...|++.+|+.+|--.- +. .|.... .... ...|+-.|+...|..++
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~ 211 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESK 211 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 467899999999999999999999885211 11 111112 2222 23466777777777777
Q ss_pred HHHHHH
Q 038048 216 QAVKIS 221 (575)
Q Consensus 216 ekALel 221 (575)
+...+.
T Consensus 212 ~~f~~~ 217 (312)
T 2wpv_A 212 DIFLER 217 (312)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 765543
No 250
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=74.50 E-value=4.8 Score=46.16 Aligned_cols=46 Identities=13% Similarity=-0.000 Sum_probs=43.2
Q ss_pred HHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHH
Q 038048 65 LIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEA 110 (575)
Q Consensus 65 l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~ 110 (575)
+..++++-|+.+-++|+.+.|.....|+.||.+|..+|+|+.|+-.
T Consensus 348 l~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLt 393 (754)
T 4gns_B 348 LNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFA 393 (754)
T ss_dssp HHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHH
Confidence 3468999999999999999999999999999999999999999966
No 251
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=73.30 E-value=14 Score=34.43 Aligned_cols=60 Identities=18% Similarity=0.035 Sum_probs=50.4
Q ss_pred HHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038048 162 LGNLA-WAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKIS 221 (575)
Q Consensus 162 ~~nLG-~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALel 221 (575)
|.++| ..+-.+|+-++=...+...+.-.+-++. .+.+|.+|.+.|+..+|..++.+|-+.
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 45565 7778999999999999998776666788 999999999999999999999999874
No 252
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=69.75 E-value=11 Score=39.24 Aligned_cols=87 Identities=15% Similarity=0.009 Sum_probs=61.0
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCc----------------------HHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHH
Q 038048 64 QLIDKDPSRAVSLFWAAINAGDRV----------------------DSALKDMAVVMKQLDRSDEAIEARSGRIEEEIEL 121 (575)
Q Consensus 64 ~l~~kd~eeAi~lf~kAL~l~p~~----------------------~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~l 121 (575)
....++++.|...+++|+.+-... ..+...++..+...|++++|+...
T Consensus 125 ~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l---------- 194 (388)
T 2ff4_A 125 AAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAEL---------- 194 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH----------
T ss_pred HHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH----------
Confidence 345689999999999999864221 012233444455555555555431
Q ss_pred HHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038048 122 LQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALS 187 (575)
Q Consensus 122 L~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALe 187 (575)
...+..+|-+..++..|-.+|...|+..+|+..|++.-+
T Consensus 195 ---------------------------~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 195 ---------------------------EALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp ---------------------------HHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred ---------------------------HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 123567899999999999999999999999999998753
No 253
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=67.91 E-value=11 Score=44.84 Aligned_cols=62 Identities=10% Similarity=0.010 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038048 160 RILGNLAWAYMQQNNFEMAEQYYRKALS-----LGVDMNKQCNLAICLMHMNRVTEAKSLLQAVKIS 221 (575)
Q Consensus 160 ~a~~nLG~aY~~qGryeEAe~~yrkALe-----idPdn~~~~NLA~iy~~qGr~eEAi~lLekALel 221 (575)
..|+.|-..|++.|+.++|..+|.+.-+ ..|+...+..|-..|.+.|++++|..+|++..+.
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~ 194 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA 194 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 3788899999999999999999977543 5677777888999999999999999999998773
No 254
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.27 E-value=9.1 Score=40.35 Aligned_cols=67 Identities=22% Similarity=0.105 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 038048 159 SRILGNLAWAYMQQNNFEMAEQYYRKALSLG--VDMNK--QCNLAICLMHMNRVTEAKSLLQAVKISAGNR 225 (575)
Q Consensus 159 ~~a~~nLG~aY~~qGryeEAe~~yrkALeid--Pdn~~--~~NLA~iy~~qGr~eEAi~lLekALel~P~n 225 (575)
..++..||..|++.|++++|..+|.++...- ++... ..++..++...+++..|..++.++.......
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~ 201 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKG 201 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcC
Confidence 3478899999999999999999999998754 34443 6788889999999999999999998875443
No 255
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=63.86 E-value=43 Score=37.33 Aligned_cols=59 Identities=15% Similarity=0.120 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038048 161 ILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKI 220 (575)
Q Consensus 161 a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALe 220 (575)
.-...+.+ +..|+++.|..+|.+.-.-...... .+=+|.++..+|+.++|..+|+++..
T Consensus 288 ~e~~~r~A-lr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 288 IERRVRMA-LGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHH-HHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHH-HHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 33344454 4669999999999775543334455 88999999999999999999999875
No 256
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=63.72 E-value=58 Score=34.42 Aligned_cols=153 Identities=12% Similarity=0.106 Sum_probs=85.8
Q ss_pred cCChHHHHHHHHHHHH---cC---CCcHHHHHHHHHHHHHCCCHHHHHHH------HhcCHHHHHH-HHHHHHHhhHH--
Q 038048 67 DKDPSRAVSLFWAAIN---AG---DRVDSALKDMAVVMKQLDRSDEAIEA------RSGRIEEEIE-LLQNKLKNIEE-- 131 (575)
Q Consensus 67 ~kd~eeAi~lf~kAL~---l~---p~~~~Al~nLA~iy~qqGrydEAie~------~~gaLeeAi~-lL~~~L~l~~~-- 131 (575)
.++++.|++-+...-+ .. +....+...+..++...|+++...++ ..+.+..++. +....+..+..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 4577888776632221 12 22355778888999999999988665 2222333321 11111111100
Q ss_pred --HHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC-CCCH----H-HHHHHHHH
Q 038048 132 --GIAFAGVKTKMARSQGKKIQITVEQEKSRILGNLAWAYMQQNNFEMAEQYYRKALS-LG-VDMN----K-QCNLAICL 202 (575)
Q Consensus 132 --a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALe-id-Pdn~----~-~~NLA~iy 202 (575)
+......+..++.... ..-+-++-....+...|+.+|...|++.+|...+..... .. .+.. . +.-...+|
T Consensus 109 ~~d~~~~~~~i~~l~~vt-e~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVT-ENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp TTHHHHHHHHHHCCSSSS-SCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 0000000100000000 000111222345678899999999999999999999763 21 2222 1 45668889
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 038048 203 MHMNRVTEAKSLLQAVKI 220 (575)
Q Consensus 203 ~~qGr~eEAi~lLekALe 220 (575)
...+++..|..++.++..
T Consensus 188 l~~~d~~~a~~~~~ki~~ 205 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILK 205 (445)
T ss_dssp HHHTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 999999999999999754
No 257
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=62.84 E-value=39 Score=40.02 Aligned_cols=120 Identities=10% Similarity=-0.046 Sum_probs=77.1
Q ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHH
Q 038048 84 GDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILG 163 (575)
Q Consensus 84 ~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~ 163 (575)
-+.++...|-+|.+|+..|++++|..++.++-..- . ...... ............ ..........|+
T Consensus 838 ~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~---~-~~~~l~----~~~~~~~~~~~~------~~~~~~l~~YY~ 903 (1139)
T 4fhn_B 838 LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVL---Y-SHTSQF----AVLREFQEIAEK------YHHQNLLSCYYL 903 (1139)
T ss_dssp SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSC---T-TCCCSC----SSHHHHHHHHHT------TTSCCSSHHHHH
T ss_pred ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhh---c-ccchhh----hhhccccccccc------ccccccHHHHHH
Confidence 45556667899999999999999999976542100 0 000000 000000000000 011222345788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHH-----HHHHHHHHHHcCCHHHHHHHHHH
Q 038048 164 NLAWAYMQQNNFEMAEQYYRKALSLGV-DMNK-----QCNLAICLMHMNRVTEAKSLLQA 217 (575)
Q Consensus 164 nLG~aY~~qGryeEAe~~yrkALeidP-dn~~-----~~NLA~iy~~qGr~eEAi~lLek 217 (575)
.+..++.+.|.++.|+...+.||+..+ ++.. +.++=..++..|+|++|...+-.
T Consensus 904 hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~ 963 (1139)
T 4fhn_B 904 HLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMV 963 (1139)
T ss_dssp HHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 888999999999999999999998764 4332 55777888999999999887743
No 258
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=61.71 E-value=18 Score=34.21 Aligned_cols=57 Identities=18% Similarity=0.165 Sum_probs=39.1
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038048 157 EKSRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNKQCNLAICLMHMNRVTEAKSLLQAVKI 220 (575)
Q Consensus 157 d~~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~~~NLA~iy~~qGr~eEAi~lLekALe 220 (575)
+....|..||...+.+|+++-|+.+|+++=. .-.|..+|.-.|+.+.-..+.+.+..
T Consensus 32 ~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-------~~~L~~Ly~~tg~~e~L~kla~iA~~ 88 (177)
T 3mkq_B 32 NDSITWERLIQEALAQGNASLAEMIYQTQHS-------FDKLSFLYLVTGDVNKLSKMQNIAQT 88 (177)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-------HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-------HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4566788888888888888888888877521 34566667777777666655555443
No 259
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=57.35 E-value=66 Score=33.85 Aligned_cols=29 Identities=14% Similarity=0.075 Sum_probs=23.1
Q ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHhC
Q 038048 161 ILGNLAWAYM-QQNNFEMAEQYYRKALSLG 189 (575)
Q Consensus 161 a~~nLG~aY~-~qGryeEAe~~yrkALeid 189 (575)
+...-|.+++ ..++|.+|..+|-++++-.
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f 211 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSYFYEAFEGF 211 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence 4444578888 8999999999999998644
No 260
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=55.76 E-value=34 Score=36.81 Aligned_cols=92 Identities=9% Similarity=0.020 Sum_probs=61.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCH--H-HHHHHHHHHHcCCHHHHHHHHHHHHHH-cCCCCCCh
Q 038048 162 LGNLAWAYMQQNNFEMAEQYYRKALSLG--------VDMN--K-QCNLAICLMHMNRVTEAKSLLQAVKIS-AGNRQMDT 229 (575)
Q Consensus 162 ~~nLG~aY~~qGryeEAe~~yrkALeid--------Pdn~--~-~~NLA~iy~~qGr~eEAi~lLekALel-~P~n~~~~ 229 (575)
.++|-.+|+++|+..-+...++..-... |... . .|-+|.+++.+++|.+|...|..|+.. .|.+.+.+
T Consensus 179 ~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~~~~ 258 (455)
T 3t5v_B 179 VNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLTNQ 258 (455)
T ss_dssp HHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCCCCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCccccch
Confidence 3445589999999999999997543332 2222 2 678999999999999999999999998 77653222
Q ss_pred hHHHHHHHHHHHHHHhccccccCc
Q 038048 230 SYSRSFERAIQMLTELESPSVLKL 253 (575)
Q Consensus 230 ~~l~slerA~elL~ele~al~~~p 253 (575)
.......+....+--+.-.++..|
T Consensus 259 ~~~~n~~~ILkyLIpv~LLlG~~P 282 (455)
T 3t5v_B 259 AITRNGTRILNYMIPTGLILGKMV 282 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCB
T ss_pred hhhhHHHHHHHHHHHHHHHcCCCC
Confidence 122333444444443333344334
No 261
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=44.54 E-value=41 Score=31.92 Aligned_cols=36 Identities=17% Similarity=0.123 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048 159 SRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK 194 (575)
Q Consensus 159 ~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~ 194 (575)
.+.++.+|.+++.+++|.+|...+.+|+..-|....
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~ 49 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQ 49 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHH
Confidence 347899999999999999999999999999886643
No 262
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=43.99 E-value=1.9e+02 Score=32.12 Aligned_cols=135 Identities=13% Similarity=-0.007 Sum_probs=85.3
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHH
Q 038048 63 IQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKM 142 (575)
Q Consensus 63 l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~a 142 (575)
..+..+|++.|..+|.+.-..........|-+|.++..+|+.++|..++...... ..+++-++
T Consensus 294 ~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---------------~~fYg~lA-- 356 (618)
T 1qsa_A 294 MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---------------RGFYPMVA-- 356 (618)
T ss_dssp HHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---------------CSHHHHHH--
T ss_pred HHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---------------CChHHHHH--
Confidence 4566789999999987643322234667888999999999999998875442210 01222221
Q ss_pred HHHhchhhHH---hhcCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHH
Q 038048 143 ARSQGKKIQI---TVEQEK-----SRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKS 213 (575)
Q Consensus 143 l~sqg~k~aL---~L~Pd~-----~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~ 213 (575)
....|....+ .+.+.. .......+..+...|...+|...+..++... + .. ...++.+....|.++.++.
T Consensus 357 a~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~-~-~~~~~~la~~a~~~~~~~~~v~ 434 (618)
T 1qsa_A 357 AQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK-S-KTEQAQLARYAFNNQWWDLSVQ 434 (618)
T ss_dssp HHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-C-HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCCCCCCCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcC-C-HHHHHHHHHHHHHCCChHHHHH
Confidence 1222221100 011100 1123456778899999999999999887642 2 34 7788888899999999886
Q ss_pred HHH
Q 038048 214 LLQ 216 (575)
Q Consensus 214 lLe 216 (575)
...
T Consensus 435 ~~~ 437 (618)
T 1qsa_A 435 ATI 437 (618)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 263
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=43.39 E-value=1.1e+02 Score=36.26 Aligned_cols=70 Identities=10% Similarity=-0.001 Sum_probs=53.7
Q ss_pred cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------hCCC---CHH-HHHHHHHHHHcCCHHH
Q 038048 155 EQEKSRILGNLAWAYMQQNNFEMAEQYYRKALS--------------------LGVD---MNK-QCNLAICLMHMNRVTE 210 (575)
Q Consensus 155 ~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALe--------------------idPd---n~~-~~NLA~iy~~qGr~eE 210 (575)
-+.++...+.+|.+|...|++++|..+|++|-. ..+. ... ++.+..++-+.|-++.
T Consensus 838 ~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~ 917 (1139)
T 4fhn_B 838 LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYID 917 (1139)
T ss_dssp SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHH
T ss_pred ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHH
Confidence 345555668899999999999999999998721 1111 123 5577888999999999
Q ss_pred HHHHHHHHHHHcCC
Q 038048 211 AKSLLQAVKISAGN 224 (575)
Q Consensus 211 Ai~lLekALel~P~ 224 (575)
++++...|++..+.
T Consensus 918 vi~fa~lAi~~~~~ 931 (1139)
T 4fhn_B 918 ALEFSLLADASKET 931 (1139)
T ss_dssp HHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHhccC
Confidence 99999999987553
No 264
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=42.57 E-value=1.3e+02 Score=35.08 Aligned_cols=68 Identities=12% Similarity=0.002 Sum_probs=51.0
Q ss_pred cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h--------------------CCCCH--H-HHHHHHHHHHcCCHHH
Q 038048 155 EQEKSRILGNLAWAYMQQNNFEMAEQYYRKALS-L--------------------GVDMN--K-QCNLAICLMHMNRVTE 210 (575)
Q Consensus 155 ~Pd~~~a~~nLG~aY~~qGryeEAe~~yrkALe-i--------------------dPdn~--~-~~NLA~iy~~qGr~eE 210 (575)
-|.++-.-|-+|.+|+..|++++|..+|++|-. + .+... . +.+...++-..+-++-
T Consensus 836 ~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~ 915 (950)
T 4gq2_M 836 LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYID 915 (950)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHH
T ss_pred cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHH
Confidence 344555668899999999999999999997642 1 11122 1 4577888888999999
Q ss_pred HHHHHHHHHHHc
Q 038048 211 AKSLLQAVKISA 222 (575)
Q Consensus 211 Ai~lLekALel~ 222 (575)
++.+.+.||..-
T Consensus 916 vi~fA~lAI~~~ 927 (950)
T 4gq2_M 916 ALEFSLLADASK 927 (950)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHhhc
Confidence 999999888754
No 265
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=38.45 E-value=3.5e+02 Score=27.86 Aligned_cols=28 Identities=18% Similarity=0.270 Sum_probs=24.3
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 038048 156 QEKSRILGNLAWAYMQQNNFEMAEQYYR 183 (575)
Q Consensus 156 Pd~~~a~~nLG~aY~~qGryeEAe~~yr 183 (575)
-.++..+..+|.+|.+.++|.+|+.+|-
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 3567799999999999999999999883
No 266
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=37.76 E-value=39 Score=27.73 Aligned_cols=23 Identities=35% Similarity=0.358 Sum_probs=11.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 038048 163 GNLAWAYMQQNNFEMAEQYYRKA 185 (575)
Q Consensus 163 ~nLG~aY~~qGryeEAe~~yrkA 185 (575)
...|.-+-..|+|++|+.+|..|
T Consensus 15 v~~Ave~D~~g~y~eAl~lY~~a 37 (83)
T 2v6y_A 15 AILAVKADKEGKVEDAITYYKKA 37 (83)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHH
Confidence 33444455555555555555544
No 267
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=37.24 E-value=40 Score=27.79 Aligned_cols=24 Identities=29% Similarity=0.141 Sum_probs=15.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 038048 162 LGNLAWAYMQQNNFEMAEQYYRKA 185 (575)
Q Consensus 162 ~~nLG~aY~~qGryeEAe~~yrkA 185 (575)
+...|.-+-..|+|++|+.+|.++
T Consensus 22 lv~~Ave~D~~g~y~eAl~lY~~a 45 (83)
T 2w2u_A 22 YAINAVKADKEGNAEEAITNYKKA 45 (83)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHH
Confidence 344556666777777777766665
No 268
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=35.85 E-value=41 Score=27.37 Aligned_cols=32 Identities=13% Similarity=0.138 Sum_probs=27.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 038048 163 GNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK 194 (575)
Q Consensus 163 ~nLG~aY~~qGryeEAe~~yrkALeidPdn~~ 194 (575)
..+|..+..+|++++|..+|-+||...|+-..
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~ 52 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 52 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 46889999999999999999999998887665
No 269
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=35.19 E-value=50 Score=28.29 Aligned_cols=26 Identities=23% Similarity=0.106 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038048 161 ILGNLAWAYMQQNNFEMAEQYYRKAL 186 (575)
Q Consensus 161 a~~nLG~aY~~qGryeEAe~~yrkAL 186 (575)
.+...+..+...|+|++||.+.++|.
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 55667888889999999998888875
No 270
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=33.39 E-value=45 Score=27.43 Aligned_cols=33 Identities=21% Similarity=0.098 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038048 175 FEMAEQYYRKALSLGVDMNKQCNLAICLMHMNRVTEAKSLLQAVKIS 221 (575)
Q Consensus 175 yeEAe~~yrkALeidPdn~~~~NLA~iy~~qGr~eEAi~lLekALel 221 (575)
.++|+.+..+|++. -..|++++|+.+|..+++.
T Consensus 16 ~~~Ai~lv~~Ave~--------------D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 16 EEMARKYAINAVKA--------------DKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHHHHHHHH--------------HHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--------------HHhccHHHHHHHHHHHHHH
Confidence 45677777776544 4677777777777666553
No 271
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=33.11 E-value=1.5e+02 Score=27.48 Aligned_cols=62 Identities=13% Similarity=0.089 Sum_probs=46.0
Q ss_pred CCcHHHH-HHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcC
Q 038048 53 GDSPYVR-AKHIQLIDKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGR 114 (575)
Q Consensus 53 ~d~~yar-A~~l~l~~kd~eeAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~ga 114 (575)
.++.|+. |......++.-++-...+...+...+-.++.++.+|.+|.+.|...+|.++...+
T Consensus 89 ~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A 151 (172)
T 1wy6_A 89 TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEA 151 (172)
T ss_dssp CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 3566666 4455566778888777887765656666899999999999999999999985443
No 272
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=32.23 E-value=49 Score=27.10 Aligned_cols=33 Identities=18% Similarity=0.138 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038048 175 FEMAEQYYRKALSLGVDMNKQCNLAICLMHMNRVTEAKSLLQAVKIS 221 (575)
Q Consensus 175 yeEAe~~yrkALeidPdn~~~~NLA~iy~~qGr~eEAi~lLekALel 221 (575)
.++|+.+..+|++. -..|++++|+.+|..+++.
T Consensus 8 ~~~Ai~lv~~Ave~--------------D~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 8 EDMARKYAILAVKA--------------DKEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HHHHHHHHHHHHHH--------------HHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--------------HHhccHHHHHHHHHHHHHH
Confidence 34788888887554 4677777777777666553
No 273
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.00 E-value=1.1e+02 Score=33.69 Aligned_cols=35 Identities=17% Similarity=0.134 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 038048 159 SRILGNLAWAYMQQNNFEMAEQYYRKALSLGVDMN 193 (575)
Q Consensus 159 ~~a~~nLG~aY~~qGryeEAe~~yrkALeidPdn~ 193 (575)
...++.+|.++.-+++|.+|..++..|+..-|.+.
T Consensus 270 ~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 270 ARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 44789999999999999999999999999887553
No 274
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=27.18 E-value=71 Score=37.20 Aligned_cols=52 Identities=6% Similarity=0.006 Sum_probs=42.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038048 165 LAWAYMQQNNFEMAEQYYRKALSLGVDMNK-QCNLAICLMHMNRVTEAKSLLQAVKI 220 (575)
Q Consensus 165 LG~aY~~qGryeEAe~~yrkALeidPdn~~-~~NLA~iy~~qGr~eEAi~lLekALe 220 (575)
+...+...|.++-| ++.+..-|.++. .+-+|.+|+..|++++|..+|++|-.
T Consensus 816 l~~~L~~~~~~~~a----~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~ 868 (950)
T 4gq2_M 816 LVEKLFLFKQYNAC----MQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL 868 (950)
T ss_dssp HHHHHHHTTCHHHH----HHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC
T ss_pred HHHHHHHhcHHHHH----HHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 55667778887754 456678899988 88999999999999999999998753
No 275
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=25.96 E-value=88 Score=25.82 Aligned_cols=26 Identities=12% Similarity=0.148 Sum_probs=18.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038048 162 LGNLAWAYMQQNNFEMAEQYYRKALS 187 (575)
Q Consensus 162 ~~nLG~aY~~qGryeEAe~~yrkALe 187 (575)
+..-|.-+-..|+|++|+.+|..|++
T Consensus 19 lv~~Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 19 VLKRAVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445666777888888888777653
No 276
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=24.34 E-value=79 Score=26.38 Aligned_cols=25 Identities=12% Similarity=0.171 Sum_probs=16.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 038048 162 LGNLAWAYMQQNNFEMAEQYYRKAL 186 (575)
Q Consensus 162 ~~nLG~aY~~qGryeEAe~~yrkAL 186 (575)
+...|.-+-..|+|++|+.+|..|+
T Consensus 18 lv~~Ave~D~~g~y~eAl~~Y~~Ai 42 (93)
T 1wfd_A 18 VLKRAVELDAESRYQQALVCYQEGI 42 (93)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3455566667777777777776664
No 277
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=23.91 E-value=72 Score=27.30 Aligned_cols=26 Identities=19% Similarity=0.045 Sum_probs=22.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038048 196 CNLAICLMHMNRVTEAKSLLQAVKIS 221 (575)
Q Consensus 196 ~NLA~iy~~qGr~eEAi~lLekALel 221 (575)
-..|..++..|+|++||.+.+++...
T Consensus 19 ~RrAe~ll~~gkydeAIech~kAa~y 44 (97)
T 2crb_A 19 SRRADRLLAAGKYEEAISCHRKATTY 44 (97)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 45788999999999999998887753
No 278
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=23.58 E-value=1e+02 Score=24.92 Aligned_cols=24 Identities=21% Similarity=0.129 Sum_probs=14.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 038048 163 GNLAWAYMQQNNFEMAEQYYRKAL 186 (575)
Q Consensus 163 ~nLG~aY~~qGryeEAe~~yrkAL 186 (575)
...|.-.-..|+|++|+.+|..|+
T Consensus 17 ~~~Av~~D~~g~y~eAl~~Y~~ai 40 (85)
T 2v6x_A 17 VQKAIDLDTATQYEEAYTAYYNGL 40 (85)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344455566677777777666654
No 279
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=23.52 E-value=90 Score=25.31 Aligned_cols=30 Identities=13% Similarity=0.117 Sum_probs=27.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 038048 195 QCNLAICLMHMNRVTEAKSLLQAVKISAGN 224 (575)
Q Consensus 195 ~~NLA~iy~~qGr~eEAi~lLekALel~P~ 224 (575)
...+|..+..+|++++|...|-+|+...|+
T Consensus 20 eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~q 49 (73)
T 3ax2_A 20 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQ 49 (73)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 357899999999999999999999999885
No 280
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=23.50 E-value=61 Score=27.68 Aligned_cols=31 Identities=13% Similarity=0.126 Sum_probs=24.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 038048 163 GNLAWAYMQQNNFEMAEQYYRKALSLGVDMN 193 (575)
Q Consensus 163 ~nLG~aY~~qGryeEAe~~yrkALeidPdn~ 193 (575)
..+|..+..+|+++.|+.+|-+||.+.|+-.
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~ 54 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQ 54 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHH
Confidence 4578888888999999888888877766544
No 281
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=22.38 E-value=95 Score=27.13 Aligned_cols=24 Identities=29% Similarity=0.290 Sum_probs=13.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 038048 163 GNLAWAYMQQNNFEMAEQYYRKAL 186 (575)
Q Consensus 163 ~nLG~aY~~qGryeEAe~~yrkAL 186 (575)
...|.-.-..|+|++|+.+|..|+
T Consensus 22 v~~Ave~D~ag~y~eAl~lY~~Ai 45 (117)
T 2cpt_A 22 ASKAAQEDKAGNYEEALQLYQHAV 45 (117)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHH
Confidence 334445555566666666666553
No 282
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=22.33 E-value=65 Score=26.48 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=17.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 038048 163 GNLAWAYMQQNNFEMAEQYYRKALS 187 (575)
Q Consensus 163 ~nLG~aY~~qGryeEAe~~yrkALe 187 (575)
..+|.=|...|+|+.|+.+|+.+++
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHH
Confidence 4566667777777777777777653
No 283
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=22.15 E-value=6.2e+02 Score=25.54 Aligned_cols=84 Identities=11% Similarity=-0.057 Sum_probs=51.3
Q ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhHHhhcCCcHHHHHHH
Q 038048 86 RVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQITVEQEKSRILGNL 165 (575)
Q Consensus 86 ~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~aL~L~Pd~~~a~~nL 165 (575)
.++..+..+|..|++-|++.+|+.++.-.-.+....+...+-.. +... ..-.|+....+...
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w-------------~~~~-----~~~~~~e~dlf~~R 193 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDW-------------LCQV-----DDIEDSTVAEFFSR 193 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHH-------------HHHT-----TCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHH-------------HHhc-----CCCCcchHHHHHHH
Confidence 46788999999999999999999986533222222222221100 0000 00133334455455
Q ss_pred H-HHHHHcCCHHHHHHHHHHHHH
Q 038048 166 A-WAYMQQNNFEMAEQYYRKALS 187 (575)
Q Consensus 166 G-~aY~~qGryeEAe~~yrkALe 187 (575)
+ .-|+.+|+...|...|..-++
T Consensus 194 aVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 194 LVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHH
Confidence 5 568899999999999887654
No 284
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=21.00 E-value=2.8e+02 Score=32.68 Aligned_cols=57 Identities=16% Similarity=0.139 Sum_probs=33.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038048 163 GNLAWAYMQQNNFEMAEQYYRKALSLGVDMNK----QCNLAICLMHMNRVTEAKSLLQAVKI 220 (575)
Q Consensus 163 ~nLG~aY~~qGryeEAe~~yrkALeidPdn~~----~~NLA~iy~~qGr~eEAi~lLekALe 220 (575)
.-+|..+...|+.+.+....+..... .+... .+.+|.+|...|+...-..++..+..
T Consensus 528 aalgLGll~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 528 LAVGLALINYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp HHHHHHHHTTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc
Confidence 44455555677777666665554443 33222 34677888888886555556666554
No 285
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=20.51 E-value=5e+02 Score=27.53 Aligned_cols=86 Identities=16% Similarity=0.102 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhC-----CCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHcCC-CCC--
Q 038048 159 SRILGNLAWAYMQQNN--FEMAEQYYRKALSLG-----VDMNK-QCNLAICLMHMNRVTEAKSLLQAVKISAGN-RQM-- 227 (575)
Q Consensus 159 ~~a~~nLG~aY~~qGr--yeEAe~~yrkALeid-----Pdn~~-~~NLA~iy~~qGr~eEAi~lLekALel~P~-n~~-- 227 (575)
+.++.|||++-.-.-- ...++.+|.+|+... ....- +.-+|..|.+.+++.||+..+-.+-..-.. |..
T Consensus 255 PmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~re 334 (472)
T 3re2_A 255 PMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKYNYSKD 334 (472)
T ss_dssp HHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGG
T ss_pred chhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHHHHHHcCCCcc
Confidence 4466666655433221 223788888888753 22222 677899999999999999999888775332 221
Q ss_pred Chh-HHHHHHHHHHHHHH
Q 038048 228 DTS-YSRSFERAIQMLTE 244 (575)
Q Consensus 228 ~~~-~l~slerA~elL~e 244 (575)
+++ +-+-++-|.+++..
T Consensus 335 DeEIYKEf~eIAneliP~ 352 (472)
T 3re2_A 335 DEEMYKEFHEIANDLIPN 352 (472)
T ss_dssp GHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHhhH
Confidence 222 22344555555553
No 286
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=20.23 E-value=7.1e+02 Score=25.51 Aligned_cols=95 Identities=13% Similarity=-0.025 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhchhhH
Q 038048 72 RAVSLFWAAINAGDRVDSALKDMAVVMKQLDRSDEAIEARSGRIEEEIELLQNKLKNIEEGIAFAGVKTKMARSQGKKIQ 151 (575)
Q Consensus 72 eAi~lf~kAL~l~p~~~~Al~nLA~iy~qqGrydEAie~~~gaLeeAi~lL~~~L~l~~~a~a~~~nla~al~sqg~k~a 151 (575)
+|+.|-.+.-...-.++..+..+|.+|++-+++.+|+.++.-.-+.....+...+ .+. .
T Consensus 120 ~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL-----------------~ew----~ 178 (336)
T 3lpz_A 120 EMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARME-----------------YEW----Y 178 (336)
T ss_dssp HHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHH-----------------HHH----H
T ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHH-----------------HHH----H
Confidence 4444444321122356788999999999999999999986432221111221111 000 0
Q ss_pred HhhcCCcHHHHHHHH-HHHHHcCCHHHHHHHHHHHHH
Q 038048 152 ITVEQEKSRILGNLA-WAYMQQNNFEMAEQYYRKALS 187 (575)
Q Consensus 152 L~L~Pd~~~a~~nLG-~aY~~qGryeEAe~~yrkALe 187 (575)
....|.....+...| .-|+..++...|...|..-++
T Consensus 179 ~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 179 KQDESHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HTSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhcCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 122345555666565 678999999999886655443
Done!