Query 038049
Match_columns 141
No_of_seqs 134 out of 1880
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 07:03:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038049.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038049hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.9 6.5E-23 1.4E-27 151.9 7.4 81 51-134 204-285 (348)
2 PF13639 zf-RING_2: Ring finge 99.8 6.8E-20 1.5E-24 98.9 2.0 44 79-123 1-44 (44)
3 PHA02929 N1R/p28-like protein; 99.7 7E-17 1.5E-21 115.1 4.4 76 52-127 148-227 (238)
4 PF12678 zf-rbx1: RING-H2 zinc 99.6 4.3E-16 9.4E-21 92.6 3.6 45 78-123 19-73 (73)
5 COG5243 HRD1 HRD ubiquitin lig 99.6 1.5E-15 3.3E-20 112.5 4.9 63 60-127 273-345 (491)
6 COG5540 RING-finger-containing 99.6 1.1E-15 2.3E-20 110.6 3.4 52 76-128 321-373 (374)
7 KOG0317 Predicted E3 ubiquitin 99.5 6E-15 1.3E-19 106.1 4.9 53 75-131 236-288 (293)
8 PLN03208 E3 ubiquitin-protein 99.4 8.6E-14 1.9E-18 95.8 3.4 54 76-133 16-85 (193)
9 PF13920 zf-C3HC4_3: Zinc fing 99.4 1.5E-13 3.4E-18 75.8 2.7 46 78-127 2-48 (50)
10 PF13923 zf-C3HC4_2: Zinc fing 99.4 3E-13 6.6E-18 70.8 2.7 39 81-122 1-39 (39)
11 cd00162 RING RING-finger (Real 99.4 4E-13 8.7E-18 71.9 3.2 44 80-126 1-45 (45)
12 KOG0823 Predicted E3 ubiquitin 99.3 1.1E-12 2.4E-17 92.0 2.6 55 75-133 44-101 (230)
13 PF12861 zf-Apc11: Anaphase-pr 99.3 2.5E-12 5.4E-17 77.3 3.3 52 78-129 21-84 (85)
14 KOG0320 Predicted E3 ubiquitin 99.3 1.8E-12 3.9E-17 87.5 2.9 58 72-131 125-182 (187)
15 KOG0802 E3 ubiquitin ligase [P 99.3 2.4E-12 5.1E-17 102.6 3.5 50 77-127 290-341 (543)
16 PHA02926 zinc finger-like prot 99.3 2.9E-12 6.2E-17 89.5 3.0 52 76-127 168-230 (242)
17 PF14634 zf-RING_5: zinc-RING 99.3 5.3E-12 1.1E-16 67.8 3.0 44 80-124 1-44 (44)
18 PF15227 zf-C3HC4_4: zinc fing 99.2 5.9E-12 1.3E-16 66.8 2.4 38 81-122 1-42 (42)
19 smart00504 Ubox Modified RING 99.2 1.5E-11 3.2E-16 71.0 3.5 52 79-134 2-53 (63)
20 PF00097 zf-C3HC4: Zinc finger 99.2 8.3E-12 1.8E-16 66.0 2.1 39 81-122 1-41 (41)
21 smart00184 RING Ring finger. E 99.1 4.3E-11 9.4E-16 61.8 2.9 38 81-122 1-39 (39)
22 TIGR00599 rad18 DNA repair pro 99.1 1.1E-10 2.4E-15 89.1 3.7 52 76-131 24-75 (397)
23 KOG0828 Predicted E3 ubiquitin 99.0 9E-11 2E-15 90.2 1.6 51 77-128 570-635 (636)
24 COG5194 APC11 Component of SCF 99.0 2.5E-10 5.3E-15 67.2 2.5 30 99-128 53-82 (88)
25 KOG1734 Predicted RING-contain 99.0 1.2E-10 2.6E-15 83.4 1.1 55 75-130 221-284 (328)
26 COG5574 PEX10 RING-finger-cont 99.0 2.2E-10 4.8E-15 81.9 2.2 52 76-131 213-266 (271)
27 KOG1493 Anaphase-promoting com 98.9 4E-10 8.7E-15 65.7 0.5 51 78-128 20-82 (84)
28 KOG0287 Postreplication repair 98.9 7.7E-10 1.7E-14 81.7 1.5 51 78-132 23-73 (442)
29 smart00744 RINGv The RING-vari 98.8 2.7E-09 6E-14 58.3 2.5 42 80-123 1-49 (49)
30 KOG2164 Predicted E3 ubiquitin 98.8 2.2E-09 4.7E-14 83.1 2.3 52 78-133 186-242 (513)
31 PF11793 FANCL_C: FANCL C-term 98.8 9.2E-10 2E-14 64.8 -0.1 51 78-128 2-67 (70)
32 PF13445 zf-RING_UBOX: RING-ty 98.8 7.2E-09 1.6E-13 55.0 2.7 34 81-116 1-35 (43)
33 PF04564 U-box: U-box domain; 98.7 4.5E-09 9.9E-14 62.4 1.9 56 78-137 4-60 (73)
34 KOG0804 Cytoplasmic Zn-finger 98.7 4.9E-09 1.1E-13 79.9 2.4 50 75-127 172-222 (493)
35 TIGR00570 cdk7 CDK-activating 98.7 9E-09 2E-13 75.9 3.5 53 79-132 4-59 (309)
36 KOG2930 SCF ubiquitin ligase, 98.7 4.3E-09 9.3E-14 64.9 1.4 50 77-127 45-108 (114)
37 COG5432 RAD18 RING-finger-cont 98.7 7.4E-09 1.6E-13 75.2 2.0 49 77-129 24-72 (391)
38 COG5219 Uncharacterized conser 98.6 1.9E-08 4.1E-13 82.8 1.0 52 76-127 1467-1523(1525)
39 KOG4265 Predicted E3 ubiquitin 98.6 3.3E-08 7.3E-13 73.6 2.2 49 76-128 288-337 (349)
40 PF14835 zf-RING_6: zf-RING of 98.5 1.6E-08 3.4E-13 57.5 0.2 48 79-131 8-55 (65)
41 KOG2177 Predicted E3 ubiquitin 98.5 3.3E-08 7.1E-13 72.6 1.8 46 75-124 10-55 (386)
42 KOG0827 Predicted E3 ubiquitin 98.5 3.6E-08 7.8E-13 74.1 1.9 50 79-128 5-57 (465)
43 KOG4172 Predicted E3 ubiquitin 98.4 4.6E-08 9.9E-13 53.5 0.2 45 79-127 8-54 (62)
44 KOG0311 Predicted E3 ubiquitin 98.4 3.4E-08 7.3E-13 73.4 -1.0 53 76-131 41-94 (381)
45 KOG1645 RING-finger-containing 98.2 6.7E-07 1.5E-11 67.8 2.8 48 78-125 4-54 (463)
46 KOG1039 Predicted E3 ubiquitin 98.2 6.8E-07 1.5E-11 67.3 2.1 52 76-127 159-221 (344)
47 KOG0825 PHD Zn-finger protein 98.2 3.3E-07 7.2E-12 74.4 -0.0 51 77-128 122-172 (1134)
48 KOG0978 E3 ubiquitin ligase in 98.2 5.5E-07 1.2E-11 72.9 0.9 51 78-132 643-694 (698)
49 KOG4445 Uncharacterized conser 98.1 1E-06 2.2E-11 64.5 1.3 55 75-130 112-189 (368)
50 KOG0297 TNF receptor-associate 98.1 2.5E-06 5.4E-11 65.8 2.6 57 75-134 18-74 (391)
51 KOG0824 Predicted E3 ubiquitin 98.0 2.6E-06 5.7E-11 62.4 2.1 49 77-129 6-55 (324)
52 KOG3970 Predicted E3 ubiquitin 98.0 4.5E-06 9.8E-11 58.8 3.1 55 78-134 50-112 (299)
53 KOG1941 Acetylcholine receptor 98.0 2E-06 4.2E-11 65.1 0.8 46 78-124 365-413 (518)
54 KOG4159 Predicted E3 ubiquitin 97.9 8.1E-06 1.8E-10 62.8 3.1 49 76-128 82-130 (398)
55 KOG1785 Tyrosine kinase negati 97.9 4.9E-06 1.1E-10 63.2 1.5 46 78-127 369-416 (563)
56 PF14570 zf-RING_4: RING/Ubox 97.9 9.2E-06 2E-10 43.8 2.2 45 81-126 1-47 (48)
57 PF11789 zf-Nse: Zinc-finger o 97.9 7.9E-06 1.7E-10 46.0 1.9 43 76-121 9-53 (57)
58 PHA02862 5L protein; Provision 97.9 9.4E-06 2E-10 53.4 2.1 56 79-139 3-65 (156)
59 PF05883 Baculo_RING: Baculovi 97.8 7.6E-06 1.6E-10 53.5 1.0 36 78-114 26-67 (134)
60 KOG0826 Predicted E3 ubiquitin 97.8 8.6E-05 1.9E-09 55.1 6.4 58 66-126 288-345 (357)
61 PHA02825 LAP/PHD finger-like p 97.8 1.9E-05 4.2E-10 52.9 2.7 60 75-138 5-70 (162)
62 KOG2660 Locus-specific chromos 97.6 1.7E-05 3.7E-10 58.8 0.2 52 76-130 13-64 (331)
63 KOG2879 Predicted E3 ubiquitin 97.5 0.00011 2.3E-09 53.4 3.8 51 74-127 235-287 (298)
64 KOG0801 Predicted E3 ubiquitin 97.5 2.4E-05 5.3E-10 52.5 0.4 32 75-107 174-205 (205)
65 KOG1428 Inhibitor of type V ad 97.5 7.2E-05 1.6E-09 64.9 3.1 66 61-128 3470-3545(3738)
66 KOG1002 Nucleotide excision re 97.4 6.8E-05 1.5E-09 59.1 1.6 56 75-134 533-593 (791)
67 KOG1952 Transcription factor N 97.4 7.2E-05 1.6E-09 61.6 1.6 49 76-124 189-244 (950)
68 KOG1571 Predicted E3 ubiquitin 97.4 1.3E-05 2.9E-10 60.1 -2.6 44 77-127 304-347 (355)
69 COG5152 Uncharacterized conser 97.4 7.2E-05 1.6E-09 51.9 1.0 44 80-127 198-241 (259)
70 KOG3039 Uncharacterized conser 97.3 0.0002 4.4E-09 51.3 2.9 55 78-132 221-275 (303)
71 PF12906 RINGv: RING-variant d 97.2 0.00026 5.7E-09 38.2 2.0 40 81-122 1-47 (47)
72 PF10367 Vps39_2: Vacuolar sor 97.2 0.00015 3.3E-09 45.7 1.2 33 76-110 76-108 (109)
73 KOG1814 Predicted E3 ubiquitin 97.2 0.00015 3.3E-09 55.3 1.3 35 79-114 185-219 (445)
74 COG5236 Uncharacterized conser 97.2 0.00029 6.2E-09 53.0 2.5 65 57-126 41-107 (493)
75 PHA03096 p28-like protein; Pro 97.1 0.00025 5.5E-09 52.4 1.6 37 79-115 179-219 (284)
76 PF08746 zf-RING-like: RING-li 97.1 0.00034 7.4E-09 37.0 1.6 41 81-122 1-43 (43)
77 KOG4692 Predicted E3 ubiquitin 97.0 0.00056 1.2E-08 51.6 2.9 49 75-127 419-467 (489)
78 KOG4739 Uncharacterized protei 96.9 0.00039 8.4E-09 49.7 1.5 50 80-133 5-54 (233)
79 KOG2114 Vacuolar assembly/sort 96.9 0.00022 4.8E-09 58.9 0.2 43 78-126 840-882 (933)
80 KOG3268 Predicted E3 ubiquitin 96.9 0.00061 1.3E-08 46.6 2.0 32 99-130 189-231 (234)
81 PF14447 Prok-RING_4: Prokaryo 96.8 0.00059 1.3E-08 37.7 1.3 46 79-130 8-53 (55)
82 KOG4275 Predicted E3 ubiquitin 96.7 0.00031 6.8E-09 51.5 -0.3 42 78-127 300-342 (350)
83 KOG1813 Predicted E3 ubiquitin 96.7 0.00056 1.2E-08 50.3 0.8 45 79-127 242-286 (313)
84 PF04641 Rtf2: Rtf2 RING-finge 96.7 0.002 4.4E-08 47.2 3.5 54 75-130 110-164 (260)
85 KOG0827 Predicted E3 ubiquitin 96.6 0.00011 2.4E-09 55.7 -3.3 51 78-129 196-247 (465)
86 COG5222 Uncharacterized conser 96.5 0.0024 5.3E-08 47.2 3.0 53 79-134 275-329 (427)
87 KOG2034 Vacuolar sorting prote 96.5 0.0015 3.2E-08 54.5 1.9 37 76-114 815-851 (911)
88 COG5175 MOT2 Transcriptional r 96.5 0.0021 4.6E-08 48.3 2.5 56 75-130 11-67 (480)
89 PF14446 Prok-RING_1: Prokaryo 96.4 0.0053 1.2E-07 33.9 3.0 35 77-111 4-38 (54)
90 KOG0309 Conserved WD40 repeat- 96.3 0.0024 5.2E-08 52.5 1.9 22 100-121 1048-1069(1081)
91 KOG1001 Helicase-like transcri 96.1 0.0015 3.3E-08 53.7 -0.0 47 79-130 455-503 (674)
92 PF10272 Tmpp129: Putative tra 96.0 0.0064 1.4E-07 46.4 2.8 30 100-129 311-353 (358)
93 KOG1940 Zn-finger protein [Gen 95.9 0.005 1.1E-07 45.3 2.0 43 81-124 161-204 (276)
94 KOG4185 Predicted E3 ubiquitin 95.8 0.0065 1.4E-07 45.2 2.4 47 79-126 4-54 (296)
95 PF07800 DUF1644: Protein of u 95.8 0.0082 1.8E-07 40.4 2.6 33 78-113 2-46 (162)
96 KOG2817 Predicted E3 ubiquitin 95.7 0.064 1.4E-06 41.2 7.1 46 78-124 334-382 (394)
97 PF03854 zf-P11: P-11 zinc fin 94.7 0.015 3.2E-07 31.1 0.9 30 100-129 18-48 (50)
98 KOG3002 Zn finger protein [Gen 94.7 0.021 4.5E-07 42.7 2.0 47 75-127 45-91 (299)
99 KOG2932 E3 ubiquitin ligase in 94.6 0.013 2.9E-07 43.5 0.8 44 79-127 91-134 (389)
100 KOG1100 Predicted E3 ubiquitin 94.6 0.016 3.5E-07 41.1 1.1 40 81-128 161-201 (207)
101 COG5183 SSM4 Protein involved 94.5 0.035 7.6E-07 46.4 3.1 55 72-127 6-66 (1175)
102 KOG1812 Predicted E3 ubiquitin 94.5 0.017 3.6E-07 44.8 1.1 39 77-116 145-184 (384)
103 KOG0298 DEAD box-containing he 94.5 0.013 2.7E-07 51.0 0.4 45 78-125 1153-1197(1394)
104 KOG1609 Protein involved in mR 93.5 0.049 1.1E-06 40.7 2.0 49 78-127 78-134 (323)
105 KOG3800 Predicted E3 ubiquitin 93.5 0.07 1.5E-06 39.4 2.7 51 80-130 2-54 (300)
106 COG5220 TFB3 Cdk activating ki 93.4 0.023 5E-07 40.9 0.0 51 77-127 9-64 (314)
107 KOG3053 Uncharacterized conser 93.3 0.056 1.2E-06 39.3 1.9 55 75-130 17-85 (293)
108 TIGR00622 ssl1 transcription f 93.3 0.12 2.5E-06 33.1 3.1 62 62-123 39-110 (112)
109 PF05290 Baculo_IE-1: Baculovi 92.7 0.097 2.1E-06 34.3 2.2 53 78-130 80-135 (140)
110 PF15050 SCIMP: SCIMP protein 92.4 0.47 1E-05 30.5 4.9 23 5-27 7-29 (133)
111 KOG3161 Predicted E3 ubiquitin 91.7 0.065 1.4E-06 43.8 0.6 40 79-120 12-51 (861)
112 KOG3899 Uncharacterized conser 91.5 0.079 1.7E-06 39.3 0.8 30 100-129 325-367 (381)
113 PF01102 Glycophorin_A: Glycop 91.3 0.46 9.9E-06 30.9 4.1 7 26-32 83-89 (122)
114 PF07975 C1_4: TFIIH C1-like d 91.1 0.17 3.6E-06 27.7 1.7 42 81-123 2-50 (51)
115 KOG3113 Uncharacterized conser 90.7 0.25 5.4E-06 35.9 2.7 50 79-130 112-161 (293)
116 KOG2807 RNA polymerase II tran 90.4 0.23 5.1E-06 37.4 2.4 62 62-124 314-375 (378)
117 KOG4367 Predicted Zn-finger pr 90.1 0.19 4.1E-06 39.4 1.8 35 77-115 3-37 (699)
118 PF10571 UPF0547: Uncharacteri 89.4 0.21 4.5E-06 23.3 0.9 23 80-104 2-24 (26)
119 KOG0802 E3 ubiquitin ligase [P 89.0 0.21 4.6E-06 40.5 1.4 47 76-130 477-523 (543)
120 PF13901 DUF4206: Domain of un 88.9 0.26 5.7E-06 34.8 1.7 40 79-124 153-197 (202)
121 KOG1815 Predicted E3 ubiquitin 88.4 0.29 6.3E-06 38.7 1.8 38 75-115 67-104 (444)
122 KOG1829 Uncharacterized conser 88.2 0.15 3.2E-06 41.5 0.0 26 95-124 533-558 (580)
123 smart00132 LIM Zinc-binding do 88.0 0.56 1.2E-05 23.1 2.2 37 81-127 2-38 (39)
124 KOG4362 Transcriptional regula 87.9 0.14 3.1E-06 42.2 -0.2 45 79-127 22-69 (684)
125 KOG2066 Vacuolar assembly/sort 87.8 0.18 4E-06 42.1 0.3 43 78-122 784-830 (846)
126 KOG3005 GIY-YIG type nuclease 87.8 0.33 7.2E-06 35.6 1.6 48 79-126 183-242 (276)
127 KOG0269 WD40 repeat-containing 87.7 0.4 8.8E-06 40.0 2.2 42 78-121 779-820 (839)
128 KOG4718 Non-SMC (structural ma 87.5 0.33 7.1E-06 34.4 1.4 45 77-124 180-224 (235)
129 PF00412 LIM: LIM domain; Int 87.1 0.57 1.2E-05 25.6 2.0 40 81-130 1-40 (58)
130 PF15176 LRR19-TM: Leucine-ric 86.7 1.6 3.5E-05 27.2 4.0 33 5-37 16-48 (102)
131 PF02439 Adeno_E3_CR2: Adenovi 86.5 2.9 6.4E-05 21.3 4.4 6 8-13 8-13 (38)
132 COG5109 Uncharacterized conser 86.2 3.9 8.4E-05 31.0 6.4 44 78-122 336-382 (396)
133 PF02891 zf-MIZ: MIZ/SP-RING z 85.9 0.72 1.6E-05 25.0 1.9 43 79-125 3-50 (50)
134 smart00249 PHD PHD zinc finger 85.5 0.53 1.1E-05 24.2 1.3 31 80-111 1-31 (47)
135 PF13719 zinc_ribbon_5: zinc-r 84.6 0.71 1.5E-05 23.3 1.4 26 79-105 3-36 (37)
136 KOG1812 Predicted E3 ubiquitin 84.4 0.44 9.6E-06 37.0 0.9 44 78-122 306-351 (384)
137 PHA03029 hypothetical protein; 83.2 2.5 5.4E-05 24.9 3.4 29 4-32 4-32 (92)
138 PF15179 Myc_target_1: Myc tar 83.2 3.1 6.7E-05 28.9 4.4 26 1-26 15-40 (197)
139 PF01363 FYVE: FYVE zinc finge 83.1 0.58 1.3E-05 26.8 0.8 38 76-113 7-44 (69)
140 KOG3842 Adaptor protein Pellin 83.0 1.8 3.9E-05 32.7 3.5 53 77-130 340-417 (429)
141 KOG0824 Predicted E3 ubiquitin 82.6 0.46 9.9E-06 35.5 0.3 49 75-126 102-150 (324)
142 PF02009 Rifin_STEVOR: Rifin/s 82.5 2.5 5.4E-05 31.8 4.1 13 23-35 271-283 (299)
143 PF12273 RCR: Chitin synthesis 82.1 1.1 2.4E-05 29.3 2.0 10 30-39 20-29 (130)
144 KOG0825 PHD Zn-finger protein 82.0 1.1 2.5E-05 37.8 2.4 52 76-127 94-154 (1134)
145 KOG3039 Uncharacterized conser 81.8 1.1 2.3E-05 32.7 1.9 37 75-115 40-76 (303)
146 PF13717 zinc_ribbon_4: zinc-r 81.7 0.91 2E-05 22.8 1.1 26 79-105 3-36 (36)
147 PF00628 PHD: PHD-finger; Int 81.5 0.74 1.6E-05 24.6 0.8 44 80-124 1-50 (51)
148 PF06906 DUF1272: Protein of u 81.3 2.5 5.4E-05 23.5 2.8 45 80-129 7-54 (57)
149 PF07191 zinc-ribbons_6: zinc- 81.1 0.13 2.8E-06 30.0 -2.4 40 79-127 2-41 (70)
150 PF01102 Glycophorin_A: Glycop 79.7 2.5 5.5E-05 27.4 3.0 25 16-40 70-94 (122)
151 PF04277 OAD_gamma: Oxaloaceta 78.6 6.1 0.00013 23.2 4.3 27 7-33 6-32 (79)
152 PF05961 Chordopox_A13L: Chord 77.5 10 0.00022 21.9 4.6 18 16-33 8-25 (68)
153 PF14569 zf-UDP: Zinc-binding 76.5 4.9 0.00011 23.9 3.3 57 77-133 8-68 (80)
154 PF15102 TMEM154: TMEM154 prot 76.4 0.45 9.8E-06 31.8 -1.2 6 109-114 130-135 (146)
155 cd00065 FYVE FYVE domain; Zinc 76.1 2.3 5E-05 23.2 1.8 36 79-114 3-38 (57)
156 KOG2068 MOT2 transcription fac 75.0 2.6 5.6E-05 32.0 2.3 49 79-128 250-299 (327)
157 cd00350 rubredoxin_like Rubred 74.7 1.7 3.8E-05 21.2 0.9 20 100-125 7-26 (33)
158 PF06844 DUF1244: Protein of u 74.7 1.9 4E-05 24.8 1.1 11 104-114 12-22 (68)
159 PF07282 OrfB_Zn_ribbon: Putat 74.7 3.6 7.8E-05 23.5 2.4 36 77-112 27-64 (69)
160 PF04423 Rad50_zn_hook: Rad50 73.8 0.85 1.8E-05 25.0 -0.4 13 117-129 21-33 (54)
161 PRK01844 hypothetical protein; 72.7 17 0.00036 21.3 5.6 18 8-25 7-24 (72)
162 smart00064 FYVE Protein presen 72.5 3.8 8.1E-05 23.3 2.1 37 78-114 10-46 (68)
163 PF04710 Pellino: Pellino; In 72.2 1.2 2.6E-05 34.6 0.0 51 78-129 328-403 (416)
164 PTZ00046 rifin; Provisional 72.2 7.8 0.00017 29.9 4.3 14 23-36 330-343 (358)
165 TIGR01477 RIFIN variant surfac 71.9 8 0.00017 29.8 4.3 14 23-36 325-338 (353)
166 PF14979 TMEM52: Transmembrane 71.9 12 0.00025 25.2 4.5 27 6-32 22-48 (154)
167 PLN02195 cellulose synthase A 71.7 5.9 0.00013 34.5 3.9 57 77-135 5-67 (977)
168 KOG2979 Protein involved in DN 70.6 2.9 6.2E-05 30.6 1.6 45 78-125 176-222 (262)
169 PF12877 DUF3827: Domain of un 70.3 2.5 5.5E-05 34.9 1.4 29 3-31 266-294 (684)
170 PHA02657 hypothetical protein; 69.8 16 0.00034 22.2 4.3 26 1-26 23-48 (95)
171 PF13908 Shisa: Wnt and FGF in 69.4 1.6 3.5E-05 30.0 0.1 10 8-17 80-89 (179)
172 smart00531 TFIIE Transcription 69.2 5.2 0.00011 26.7 2.5 18 117-134 124-141 (147)
173 PRK05978 hypothetical protein; 69.1 3.2 6.9E-05 27.9 1.5 28 98-130 37-66 (148)
174 PF14169 YdjO: Cold-inducible 68.8 2.6 5.5E-05 23.8 0.8 15 116-130 39-53 (59)
175 smart00647 IBR In Between Ring 68.8 1.5 3.2E-05 24.4 -0.2 19 94-112 40-58 (64)
176 PF07649 C1_3: C1-like domain; 68.2 5.1 0.00011 18.9 1.7 29 80-109 2-30 (30)
177 COG3813 Uncharacterized protei 67.4 5.7 0.00012 23.3 2.1 34 101-136 28-61 (84)
178 PLN02189 cellulose synthase 67.0 6.7 0.00014 34.4 3.3 50 77-127 33-87 (1040)
179 PF05454 DAG1: Dystroglycan (D 67.0 1.8 4E-05 32.4 0.0 24 13-36 151-174 (290)
180 PF02723 NS3_envE: Non-structu 64.3 24 0.00052 21.3 4.4 31 5-35 15-45 (82)
181 PF07219 HemY_N: HemY protein 64.1 13 0.00028 23.3 3.5 28 5-32 15-42 (108)
182 PRK00523 hypothetical protein; 62.7 29 0.00063 20.3 5.7 32 8-39 4-35 (72)
183 PF02038 ATP1G1_PLM_MAT8: ATP1 62.4 12 0.00027 20.2 2.7 21 8-28 15-35 (50)
184 COG5627 MMS21 DNA repair prote 61.8 4.9 0.00011 29.2 1.3 41 78-121 189-231 (275)
185 KOG1538 Uncharacterized conser 61.5 4.2 9.1E-05 34.1 1.1 36 93-128 1043-1078(1081)
186 PF12907 zf-met2: Zinc-binding 61.0 1.1 2.5E-05 23.1 -1.4 21 118-138 3-23 (40)
187 PRK14762 membrane protein; Pro 60.6 16 0.00035 16.7 3.4 19 6-24 5-23 (27)
188 PF09723 Zn-ribbon_8: Zinc rib 60.1 1.7 3.8E-05 22.5 -0.9 25 99-124 10-34 (42)
189 PRK01844 hypothetical protein; 59.7 15 0.00033 21.5 2.9 32 8-39 3-34 (72)
190 TIGR01195 oadG_fam sodium pump 59.3 34 0.00074 20.5 4.6 30 8-37 10-39 (82)
191 PF07406 NICE-3: NICE-3 protei 59.3 7.4 0.00016 27.2 1.9 17 104-120 124-142 (186)
192 PLN02436 cellulose synthase A 59.3 13 0.00027 32.9 3.5 50 77-127 35-89 (1094)
193 PF10497 zf-4CXXC_R1: Zinc-fin 59.1 11 0.00023 23.8 2.4 24 101-124 37-69 (105)
194 PF11770 GAPT: GRB2-binding ad 59.0 7.3 0.00016 26.2 1.7 17 21-37 21-37 (158)
195 PHA03049 IMV membrane protein; 58.6 33 0.00072 19.7 4.5 10 23-32 15-24 (68)
196 KOG3799 Rab3 effector RIM1 and 58.5 5.1 0.00011 26.5 0.9 24 74-105 61-85 (169)
197 PF11014 DUF2852: Protein of u 58.5 27 0.00059 22.5 4.2 28 5-32 9-36 (115)
198 PRK03564 formate dehydrogenase 58.1 5.1 0.00011 30.3 1.0 47 77-124 186-234 (309)
199 KOG3579 Predicted E3 ubiquitin 57.8 5.7 0.00012 29.7 1.2 39 78-116 268-306 (352)
200 PF02009 Rifin_STEVOR: Rifin/s 57.4 18 0.00039 27.3 3.7 6 23-28 275-280 (299)
201 PF04216 FdhE: Protein involve 56.5 1.4 3.1E-05 32.8 -2.2 48 77-125 171-220 (290)
202 PF14991 MLANA: Protein melan- 56.2 1.6 3.6E-05 27.8 -1.6 21 15-35 30-50 (118)
203 COG3630 OadG Na+-transporting 56.0 38 0.00083 20.5 4.3 31 7-37 12-42 (84)
204 PF11446 DUF2897: Protein of u 55.9 23 0.0005 19.6 3.1 10 18-27 14-23 (55)
205 KOG1729 FYVE finger containing 55.5 3.4 7.5E-05 30.9 -0.3 37 79-116 215-251 (288)
206 COG1545 Predicted nucleic-acid 55.0 5.7 0.00012 26.4 0.7 21 98-126 33-53 (140)
207 COG4357 Zinc finger domain con 54.6 9.6 0.00021 23.7 1.6 29 100-129 65-93 (105)
208 PF04689 S1FA: DNA binding pro 54.4 14 0.00031 21.0 2.2 28 3-30 11-38 (69)
209 PF02318 FYVE_2: FYVE-type zin 54.2 10 0.00022 24.3 1.8 46 76-124 52-102 (118)
210 COG3492 Uncharacterized protei 53.6 6.5 0.00014 24.1 0.7 12 104-115 43-54 (104)
211 KOG1815 Predicted E3 ubiquitin 53.6 4.1 8.9E-05 32.3 -0.1 38 78-115 226-267 (444)
212 PF13908 Shisa: Wnt and FGF in 53.5 5.1 0.00011 27.5 0.3 20 9-28 77-96 (179)
213 PF06937 EURL: EURL protein; 53.4 13 0.00028 27.6 2.3 17 104-120 57-74 (285)
214 PF09943 DUF2175: Uncharacteri 53.3 13 0.00027 23.4 2.0 34 79-114 3-36 (101)
215 PLN02915 cellulose synthase A 52.9 21 0.00046 31.5 3.9 51 77-127 14-68 (1044)
216 KOG2071 mRNA cleavage and poly 52.4 7.1 0.00015 32.0 1.0 36 76-113 511-557 (579)
217 PF14311 DUF4379: Domain of un 52.2 8.9 0.00019 20.9 1.1 23 99-122 33-55 (55)
218 smart00734 ZnF_Rad18 Rad18-lik 51.7 1.5 3.2E-05 20.3 -1.8 9 118-126 3-11 (26)
219 PLN02638 cellulose synthase A 51.6 20 0.00044 31.7 3.6 49 78-127 17-70 (1079)
220 PTZ00370 STEVOR; Provisional 50.7 28 0.0006 26.1 3.7 26 13-38 262-287 (296)
221 cd00730 rubredoxin Rubredoxin; 50.2 14 0.00031 20.0 1.7 10 116-125 34-43 (50)
222 PF13832 zf-HC5HC2H_2: PHD-zin 49.9 13 0.00028 23.2 1.7 33 78-112 55-88 (110)
223 PF09889 DUF2116: Uncharacteri 49.7 9.2 0.0002 21.5 0.9 17 115-131 2-18 (59)
224 PRK14473 F0F1 ATP synthase sub 49.4 37 0.00081 22.8 4.1 13 2-14 4-16 (164)
225 PF05510 Sarcoglycan_2: Sarcog 49.0 17 0.00037 28.4 2.6 29 2-30 281-309 (386)
226 PF13771 zf-HC5HC2H: PHD-like 48.7 11 0.00024 22.5 1.3 31 79-111 37-68 (90)
227 PRK11088 rrmA 23S rRNA methylt 48.2 13 0.00028 27.3 1.7 24 80-104 4-27 (272)
228 KOG0006 E3 ubiquitin-protein l 47.4 18 0.00039 27.6 2.4 33 77-113 220-254 (446)
229 PHA02849 putative transmembran 47.2 61 0.0013 19.3 4.7 13 2-14 12-24 (82)
230 PF06667 PspB: Phage shock pro 47.0 60 0.0013 19.2 5.1 8 23-30 20-27 (75)
231 PF05393 Hum_adeno_E3A: Human 47.0 51 0.0011 20.1 3.8 6 26-31 51-56 (94)
232 COG0675 Transposase and inacti 46.9 19 0.00042 26.6 2.6 35 75-112 306-340 (364)
233 PLN02400 cellulose synthase 46.8 23 0.00049 31.5 3.2 50 77-127 35-89 (1085)
234 PF15353 HECA: Headcase protei 46.7 13 0.00027 23.5 1.3 14 100-113 40-53 (107)
235 PTZ00208 65 kDa invariant surf 45.9 14 0.0003 29.0 1.6 21 6-26 386-406 (436)
236 COG1622 CyoA Heme/copper-type 45.8 40 0.00086 24.7 3.9 10 109-118 216-225 (247)
237 PF15048 OSTbeta: Organic solu 45.6 45 0.00098 21.7 3.7 19 15-33 43-61 (125)
238 PF05715 zf-piccolo: Piccolo Z 45.1 17 0.00036 20.5 1.5 9 118-126 4-12 (61)
239 KOG3637 Vitronectin receptor, 45.1 16 0.00036 32.3 2.1 24 5-28 978-1001(1030)
240 PF03884 DUF329: Domain of unk 44.8 9.5 0.00021 21.3 0.5 16 117-132 3-18 (57)
241 PTZ00303 phosphatidylinositol 44.7 18 0.0004 31.1 2.3 35 79-113 461-500 (1374)
242 PF14205 Cys_rich_KTR: Cystein 44.6 15 0.00033 20.3 1.2 10 117-126 29-38 (55)
243 TIGR01562 FdhE formate dehydro 43.9 9.9 0.00022 28.7 0.6 48 77-125 183-233 (305)
244 PF11770 GAPT: GRB2-binding ad 43.9 9.3 0.0002 25.7 0.4 32 5-36 9-40 (158)
245 KOG4577 Transcription factor L 43.5 5.5 0.00012 29.8 -0.8 42 79-130 93-134 (383)
246 TIGR00686 phnA alkylphosphonat 43.4 15 0.00031 23.4 1.2 27 79-105 3-30 (109)
247 PF07010 Endomucin: Endomucin; 43.0 54 0.0012 23.8 4.1 22 7-28 188-209 (259)
248 PRK02919 oxaloacetate decarbox 42.9 74 0.0016 19.1 4.7 28 10-37 15-42 (82)
249 PF03119 DNA_ligase_ZBD: NAD-d 42.5 9.8 0.00021 17.9 0.3 12 118-129 1-12 (28)
250 PF14654 Epiglycanin_C: Mucin, 41.9 80 0.0017 19.7 4.2 22 11-32 22-43 (106)
251 PLN02248 cellulose synthase-li 41.8 24 0.00053 31.4 2.6 30 99-128 149-178 (1135)
252 PF14979 TMEM52: Transmembrane 41.7 83 0.0018 21.2 4.5 33 5-37 18-50 (154)
253 PF05568 ASFV_J13L: African sw 41.6 38 0.00083 22.8 3.0 8 29-36 48-55 (189)
254 PF00130 C1_1: Phorbol esters/ 41.0 24 0.00052 18.7 1.7 33 78-111 11-45 (53)
255 PRK01343 zinc-binding protein; 40.7 15 0.00033 20.5 0.9 12 116-127 9-20 (57)
256 PF09237 GAGA: GAGA factor; I 40.6 9.5 0.00021 20.9 0.1 10 118-127 26-35 (54)
257 PF10083 DUF2321: Uncharacteri 40.3 8.8 0.00019 26.0 -0.1 44 83-129 9-52 (158)
258 COG5151 SSL1 RNA polymerase II 39.9 30 0.00064 26.4 2.5 63 62-124 346-418 (421)
259 PF04971 Lysis_S: Lysis protei 39.2 61 0.0013 18.8 3.2 12 7-18 33-44 (68)
260 PF08274 PhnA_Zn_Ribbon: PhnA 39.2 11 0.00024 18.1 0.2 26 79-104 3-29 (30)
261 TIGR02976 phageshock_pspB phag 39.1 83 0.0018 18.6 5.0 24 12-35 6-29 (75)
262 KOG1245 Chromatin remodeling c 38.7 11 0.00025 34.3 0.3 50 76-126 1106-1159(1404)
263 PF09538 FYDLN_acid: Protein o 38.6 22 0.00048 22.5 1.5 10 79-88 10-19 (108)
264 PHA03099 epidermal growth fact 38.4 73 0.0016 21.0 3.8 12 25-36 117-128 (139)
265 PRK00418 DNA gyrase inhibitor; 38.2 20 0.00044 20.4 1.1 11 117-127 7-17 (62)
266 PF13179 DUF4006: Family of un 38.1 70 0.0015 18.4 3.3 16 8-23 17-32 (66)
267 PF07213 DAP10: DAP10 membrane 38.1 90 0.0019 18.7 4.4 29 4-32 31-59 (79)
268 PRK03427 cell division protein 38.0 70 0.0015 24.6 4.3 21 7-27 6-26 (333)
269 KOG1512 PHD Zn-finger protein 37.9 14 0.00029 27.8 0.5 33 78-111 314-346 (381)
270 PRK03814 oxaloacetate decarbox 37.6 95 0.002 18.8 4.5 24 9-32 15-38 (85)
271 PF15339 Afaf: Acrosome format 37.5 70 0.0015 22.2 3.8 32 6-37 130-161 (200)
272 PF12072 DUF3552: Domain of un 37.3 70 0.0015 22.4 4.1 17 8-24 3-19 (201)
273 PF14584 DUF4446: Protein of u 36.4 61 0.0013 21.8 3.5 23 75-98 94-116 (151)
274 COG4647 AcxC Acetone carboxyla 36.3 18 0.0004 23.8 0.9 22 81-106 60-81 (165)
275 PF07438 DUF1514: Protein of u 36.3 44 0.00095 19.1 2.3 9 7-15 2-10 (66)
276 PF05191 ADK_lid: Adenylate ki 36.0 16 0.00035 18.2 0.5 29 97-127 4-32 (36)
277 COG4847 Uncharacterized protei 36.0 44 0.00096 20.7 2.4 35 79-115 7-41 (103)
278 PRK13461 F0F1 ATP synthase sub 35.8 84 0.0018 21.0 4.1 8 4-11 3-10 (159)
279 PF10577 UPF0560: Uncharacteri 35.7 79 0.0017 27.3 4.6 20 8-27 274-293 (807)
280 KOG4443 Putative transcription 35.6 18 0.00039 30.2 0.9 28 99-126 40-72 (694)
281 PF12191 stn_TNFRSF12A: Tumour 35.6 9 0.0002 25.0 -0.6 16 21-36 92-107 (129)
282 KOG2041 WD40 repeat protein [G 35.2 29 0.00062 29.7 2.0 27 97-127 1159-1185(1189)
283 PF04834 Adeno_E3_14_5: Early 35.2 58 0.0013 20.3 2.9 19 4-22 22-40 (97)
284 COG5415 Predicted integral mem 35.0 47 0.001 23.8 2.8 33 99-131 194-229 (251)
285 PF06750 DiS_P_DiS: Bacterial 34.5 30 0.00064 21.2 1.6 37 79-128 34-70 (92)
286 PF00974 Rhabdo_glycop: Rhabdo 34.3 13 0.00029 30.0 0.0 22 13-34 458-479 (501)
287 PRK09173 F0F1 ATP synthase sub 34.1 1.1E+02 0.0023 20.5 4.4 17 2-18 1-17 (159)
288 cd00729 rubredoxin_SM Rubredox 33.8 28 0.0006 17.0 1.1 9 117-125 19-27 (34)
289 PF03107 C1_2: C1 domain; Int 33.7 33 0.00071 16.1 1.4 28 80-108 2-29 (30)
290 PF15176 LRR19-TM: Leucine-ric 33.7 1.2E+02 0.0027 19.0 4.6 34 4-37 19-52 (102)
291 PRK10220 hypothetical protein; 33.1 34 0.00073 21.8 1.6 26 79-104 4-30 (111)
292 PF05810 NinF: NinF protein; 32.9 38 0.00082 18.8 1.6 11 104-114 34-44 (58)
293 KOG1140 N-end rule pathway, re 32.9 22 0.00049 33.1 1.1 16 99-114 1150-1165(1738)
294 PF01485 IBR: IBR domain; Int 32.8 5.2 0.00011 22.0 -1.9 33 80-112 20-58 (64)
295 PF15069 FAM163: FAM163 family 32.2 24 0.00053 23.5 1.0 18 10-27 9-26 (143)
296 TIGR01477 RIFIN variant surfac 32.2 64 0.0014 25.0 3.3 25 14-39 313-337 (353)
297 PF13248 zf-ribbon_3: zinc-rib 31.5 33 0.00072 15.5 1.1 10 116-125 16-25 (26)
298 COG2835 Uncharacterized conser 31.3 20 0.00043 20.2 0.4 10 118-127 10-19 (60)
299 TIGR02605 CxxC_CxxC_SSSS putat 31.2 12 0.00026 20.0 -0.5 25 99-124 10-34 (52)
300 PHA03286 envelope glycoprotein 30.8 89 0.0019 25.2 3.9 21 15-35 399-419 (492)
301 PF06677 Auto_anti-p27: Sjogre 30.7 34 0.00073 17.7 1.2 18 111-128 12-29 (41)
302 PF05478 Prominin: Prominin; 29.6 79 0.0017 27.3 3.8 28 9-36 95-122 (806)
303 KOG3352 Cytochrome c oxidase, 29.6 29 0.00064 23.4 1.0 7 80-87 113-119 (153)
304 smart00109 C1 Protein kinase C 29.6 44 0.00095 16.9 1.6 32 79-111 12-44 (49)
305 cd00029 C1 Protein kinase C co 29.5 33 0.00071 17.6 1.1 32 79-111 12-45 (50)
306 PF13453 zf-TFIIB: Transcripti 29.5 21 0.00046 18.1 0.3 12 118-129 1-12 (41)
307 PTZ00046 rifin; Provisional 29.1 72 0.0016 24.8 3.1 26 13-39 317-342 (358)
308 PRK11827 hypothetical protein; 29.1 19 0.00041 20.3 0.1 18 117-134 27-44 (60)
309 PF13807 GNVR: G-rich domain o 28.7 1.3E+02 0.0028 17.6 3.8 10 9-18 62-71 (82)
310 TIGR01053 LSD1 zinc finger dom 28.3 41 0.0009 16.2 1.2 15 118-132 3-17 (31)
311 PF05353 Atracotoxin: Delta At 28.3 3.3 7.2E-05 21.2 -2.8 15 106-120 18-32 (42)
312 PRK07352 F0F1 ATP synthase sub 27.9 1.3E+02 0.0029 20.4 4.1 9 2-10 15-23 (174)
313 PF03672 UPF0154: Uncharacteri 27.7 1.3E+02 0.0028 17.2 4.4 6 21-26 13-18 (64)
314 PRK03427 cell division protein 27.6 76 0.0017 24.4 3.0 30 12-41 7-36 (333)
315 PF01708 Gemini_mov: Geminivir 27.6 29 0.00063 21.3 0.7 18 15-32 43-60 (91)
316 PF12768 Rax2: Cortical protei 27.6 36 0.00078 25.4 1.3 13 20-32 243-255 (281)
317 PRK00241 nudC NADH pyrophospha 27.5 45 0.00098 24.5 1.8 24 105-128 88-111 (256)
318 TIGR02098 MJ0042_CXXC MJ0042 f 27.5 61 0.0013 15.8 1.8 10 80-89 4-13 (38)
319 PRK14756 hypothetical protein; 27.3 81 0.0018 14.8 3.5 21 3-23 4-24 (29)
320 PRK11595 DNA utilization prote 27.2 57 0.0012 23.3 2.3 38 80-126 7-44 (227)
321 KOG2231 Predicted E3 ubiquitin 27.2 54 0.0012 27.7 2.3 51 80-134 2-59 (669)
322 PF01528 Herpes_glycop: Herpes 26.9 1.1E+02 0.0024 23.9 3.9 25 11-35 309-333 (374)
323 COG2824 PhnA Uncharacterized Z 26.8 39 0.00084 21.4 1.2 28 79-113 4-31 (112)
324 COG3190 FliO Flagellar biogene 26.5 1.9E+02 0.0042 19.2 4.4 23 13-35 27-49 (137)
325 PHA02942 putative transposase; 26.3 72 0.0016 24.9 2.8 36 77-112 324-360 (383)
326 PRK06266 transcription initiat 26.1 1E+02 0.0022 21.4 3.2 18 113-130 133-150 (178)
327 PF03966 Trm112p: Trm112p-like 26.0 52 0.0011 18.7 1.6 8 119-126 56-63 (68)
328 PF07503 zf-HYPF: HypF finger; 25.2 58 0.0013 16.1 1.4 8 117-124 22-29 (35)
329 PRK06531 yajC preprotein trans 25.1 33 0.00072 22.0 0.7 7 104-110 74-80 (113)
330 PF04156 IncA: IncA protein; 25.1 1.6E+02 0.0035 20.1 4.2 21 8-28 39-59 (191)
331 PRK00398 rpoP DNA-directed RNA 25.0 34 0.00074 17.7 0.6 16 116-131 21-36 (46)
332 PF10013 DUF2256: Uncharacteri 24.9 37 0.0008 17.7 0.7 12 116-127 8-19 (42)
333 PRK00420 hypothetical protein; 24.9 60 0.0013 20.8 1.8 10 79-88 24-33 (112)
334 KOG2789 Putative Zn-finger pro 24.8 26 0.00056 27.6 0.1 33 78-112 74-106 (482)
335 PF14353 CpXC: CpXC protein 24.8 66 0.0014 20.6 2.1 10 118-127 40-49 (128)
336 KOG2113 Predicted RNA binding 24.6 84 0.0018 24.1 2.7 44 77-126 342-386 (394)
337 COG4736 CcoQ Cbb3-type cytochr 24.6 1.4E+02 0.0031 16.8 3.4 13 20-32 19-31 (60)
338 PF12172 DUF35_N: Rubredoxin-l 24.5 25 0.00055 17.3 0.0 18 99-124 16-33 (37)
339 CHL00019 atpF ATP synthase CF0 24.3 1.5E+02 0.0032 20.4 3.8 9 2-10 20-28 (184)
340 PF11084 DUF2621: Protein of u 24.3 2.2E+02 0.0048 18.8 4.9 8 11-18 14-21 (141)
341 PF06170 DUF983: Protein of un 24.0 42 0.00092 20.3 0.9 20 111-130 3-22 (86)
342 PF10146 zf-C4H2: Zinc finger- 23.6 56 0.0012 23.7 1.7 22 105-126 197-218 (230)
343 PF12955 DUF3844: Domain of un 23.6 1.9E+02 0.0041 18.2 3.8 11 6-16 68-78 (103)
344 PF12773 DZR: Double zinc ribb 23.5 69 0.0015 16.7 1.7 11 117-127 30-40 (50)
345 TIGR02300 FYDLN_acid conserved 23.1 57 0.0012 21.4 1.5 29 79-107 10-39 (129)
346 KOG4323 Polycomb-like PHD Zn-f 22.9 48 0.0011 26.6 1.3 49 78-126 168-225 (464)
347 PF12088 DUF3565: Protein of u 22.8 59 0.0013 18.3 1.3 16 90-106 8-23 (61)
348 TIGR02194 GlrX_NrdH Glutaredox 22.8 24 0.00052 20.0 -0.3 11 115-125 5-15 (72)
349 PF03229 Alpha_GJ: Alphavirus 22.7 2.1E+02 0.0047 18.5 3.9 27 8-37 88-114 (126)
350 PF06422 PDR_CDR: CDR ABC tran 22.5 1.7E+02 0.0036 18.2 3.5 21 7-27 49-69 (103)
351 PF15298 AJAP1_PANP_C: AJAP1/P 22.2 19 0.00042 25.4 -0.9 9 23-31 117-125 (205)
352 KOG4430 Topoisomerase I-bindin 22.1 33 0.00073 28.1 0.3 52 76-127 258-309 (553)
353 PF07095 IgaA: Intracellular g 22.0 99 0.0021 26.2 2.9 13 100-113 149-161 (705)
354 PF02148 zf-UBP: Zn-finger in 22.0 62 0.0013 18.0 1.3 24 81-107 1-24 (63)
355 TIGR02183 GRXA Glutaredoxin, G 21.6 29 0.00063 20.5 -0.1 10 115-124 6-15 (86)
356 KOG4451 Uncharacterized conser 21.5 60 0.0013 23.6 1.4 22 106-127 253-274 (286)
357 PF06084 Cytomega_TRL10: Cytom 21.3 55 0.0012 21.0 1.1 16 21-36 69-84 (150)
358 KOG4684 Uncharacterized conser 21.2 51 0.0011 23.8 1.0 9 117-125 190-198 (275)
359 PF13913 zf-C2HC_2: zinc-finge 20.8 37 0.0008 15.3 0.2 9 118-126 4-12 (25)
360 TIGR01206 lysW lysine biosynth 20.6 59 0.0013 17.9 1.0 8 119-126 25-32 (54)
361 PF00301 Rubredoxin: Rubredoxi 20.6 44 0.00096 17.8 0.5 12 80-91 3-14 (47)
362 KOG4482 Sarcoglycan complex, a 20.2 2.3E+02 0.0051 22.4 4.4 26 7-32 298-323 (449)
363 PF13894 zf-C2H2_4: C2H2-type 20.1 45 0.00098 13.7 0.4 9 119-127 3-11 (24)
364 COG4068 Uncharacterized protei 20.0 61 0.0013 18.2 1.0 17 116-132 8-24 (64)
365 COG3357 Predicted transcriptio 20.0 51 0.0011 20.3 0.7 27 99-129 63-89 (97)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=6.5e-23 Score=151.89 Aligned_cols=81 Identities=35% Similarity=0.867 Sum_probs=67.5
Q ss_pred cCCCCHHHHhhCCceeecCCCCCCCCCcccccccccccccCCceeecCCCCCcccHhhHHHHHcCC-CccccccccccCC
Q 038049 51 NSGLKRKEMVALPTVTYANSGSSPSSASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSH-SSCPTCRQRLKPS 129 (141)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~-~~CP~CR~~~~~~ 129 (141)
.+.+.++.+.++|..+|+....+... .+|+||||+|+++|+++.|| |+|.||..||+.||.+. ..||+|++++...
T Consensus 204 ~~r~~k~~l~~~p~~~f~~~~~~~~~--~~CaIClEdY~~GdklRiLP-C~H~FH~~CIDpWL~~~r~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 204 RNRLIKRLLKKLPVRTFTKGDDEDAT--DTCAICLEDYEKGDKLRILP-CSHKFHVNCIDPWLTQTRTFCPVCKRDIRTD 280 (348)
T ss_pred hhhhHHHHHhhCCcEEeccccccCCC--ceEEEeecccccCCeeeEec-CCCchhhccchhhHhhcCccCCCCCCcCCCC
Confidence 34456788899999999986555444 68999999999999999999 99999999999999876 5599999988755
Q ss_pred CCCCC
Q 038049 130 DAMPS 134 (141)
Q Consensus 130 ~~~~~ 134 (141)
...+.
T Consensus 281 ~~~~~ 285 (348)
T KOG4628|consen 281 SGSEP 285 (348)
T ss_pred CCCCC
Confidence 44433
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.78 E-value=6.8e-20 Score=98.86 Aligned_cols=44 Identities=50% Similarity=1.217 Sum_probs=40.4
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCcccccc
Q 038049 79 AGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCR 123 (141)
Q Consensus 79 ~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR 123 (141)
++|+||++++.+++.+..++ |||.||.+||.+|++++.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhCCcCCccC
Confidence 36999999999999999998 999999999999999999999998
No 3
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.66 E-value=7e-17 Score=115.15 Aligned_cols=76 Identities=29% Similarity=0.607 Sum_probs=57.1
Q ss_pred CCCCHHHHhhCCceeecCCCCCCCCCcccccccccccccCCc----eeecCCCCCcccHhhHHHHHcCCCcccccccccc
Q 038049 52 SGLKRKEMVALPTVTYANSGSSPSSASAGCAICLLDFIDGDE----IRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLK 127 (141)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~----v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~ 127 (141)
++..+..++.+|.....-........+.+|+||++.+.+++. +..++.|+|.||.+||.+|+..+.+||+||.++.
T Consensus 148 ~~~~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 148 GKNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred cchhHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 455677788888886554333233456889999999866431 2344459999999999999999999999999875
No 4
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.61 E-value=4.3e-16 Score=92.58 Aligned_cols=45 Identities=42% Similarity=0.938 Sum_probs=35.6
Q ss_pred cccccccccccccC----------CceeecCCCCCcccHhhHHHHHcCCCcccccc
Q 038049 78 SAGCAICLLDFIDG----------DEIRLLPKCNHRFHVACIDKWLLSHSSCPTCR 123 (141)
Q Consensus 78 ~~~C~ICl~~~~~~----------~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR 123 (141)
++.|+||++++.+. -.+...+ |||.||..||.+|++.+.+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~-C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGP-CGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEET-TSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecc-cCCCEEHHHHHHHHhcCCcCCCCC
Confidence 34599999999332 2344555 999999999999999999999998
No 5
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.5e-15 Score=112.51 Aligned_cols=63 Identities=29% Similarity=0.729 Sum_probs=48.0
Q ss_pred hhCCceeecCCCCCCCCCccccccccccc-ccC---------CceeecCCCCCcccHhhHHHHHcCCCcccccccccc
Q 038049 60 VALPTVTYANSGSSPSSASAGCAICLLDF-IDG---------DEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLK 127 (141)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~C~ICl~~~-~~~---------~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~ 127 (141)
+..|..+..+. ..++..|.||||++ .++ .+...+| |||+||-+|+..|++++++||+||.++.
T Consensus 273 ~~~~t~t~eql----~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLp-CGHilHl~CLknW~ERqQTCPICr~p~i 345 (491)
T COG5243 273 AMYPTATEEQL----TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQTCPICRRPVI 345 (491)
T ss_pred hhcchhhhhhh----cCCCCeEEEecccccCCCCccCcccccCCccccc-ccceeeHHHHHHHHHhccCCCcccCccc
Confidence 33444444433 45668899999994 333 1346788 9999999999999999999999999953
No 6
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.1e-15 Score=110.63 Aligned_cols=52 Identities=52% Similarity=1.276 Sum_probs=47.4
Q ss_pred CCcccccccccccccCCceeecCCCCCcccHhhHHHHHc-CCCccccccccccC
Q 038049 76 SASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLL-SHSSCPTCRQRLKP 128 (141)
Q Consensus 76 ~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~-~~~~CP~CR~~~~~ 128 (141)
+...+|+|||+.|..+|.++.+| |.|.||..|++.|+. -+..||+||.++++
T Consensus 321 ~~GveCaICms~fiK~d~~~vlP-C~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 321 DKGVECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CCCceEEEEhhhhcccceEEEec-cCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 34588999999999999999999 999999999999998 56789999999875
No 7
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=6e-15 Score=106.14 Aligned_cols=53 Identities=32% Similarity=0.824 Sum_probs=46.0
Q ss_pred CCCcccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccCCCC
Q 038049 75 SSASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKPSDA 131 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~~~ 131 (141)
......|++||+...++ .-+| |||+||+.||.+|...+..||+||....+.+.
T Consensus 236 ~~a~~kC~LCLe~~~~p---SaTp-CGHiFCWsCI~~w~~ek~eCPlCR~~~~pskv 288 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNP---SATP-CGHIFCWSCILEWCSEKAECPLCREKFQPSKV 288 (293)
T ss_pred CCCCCceEEEecCCCCC---CcCc-CcchHHHHHHHHHHccccCCCcccccCCCcce
Confidence 45568899999987666 7888 99999999999999999999999998877653
No 8
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.43 E-value=8.6e-14 Score=95.84 Aligned_cols=54 Identities=30% Similarity=0.735 Sum_probs=43.0
Q ss_pred CCcccccccccccccCCceeecCCCCCcccHhhHHHHHcC----------------CCccccccccccCCCCCC
Q 038049 76 SASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLS----------------HSSCPTCRQRLKPSDAMP 133 (141)
Q Consensus 76 ~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~----------------~~~CP~CR~~~~~~~~~~ 133 (141)
.++.+|+||++.+.++ .+++ |||.||+.||..|+.. ...||+||+.+......|
T Consensus 16 ~~~~~CpICld~~~dP---VvT~-CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvP 85 (193)
T PLN03208 16 GGDFDCNICLDQVRDP---VVTL-CGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVP 85 (193)
T ss_pred CCccCCccCCCcCCCc---EEcC-CCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEE
Confidence 4567899999998665 5677 9999999999999852 346999999987655443
No 9
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.40 E-value=1.5e-13 Score=75.82 Aligned_cols=46 Identities=35% Similarity=0.865 Sum_probs=38.7
Q ss_pred cccccccccccccCCceeecCCCCCc-ccHhhHHHHHcCCCcccccccccc
Q 038049 78 SAGCAICLLDFIDGDEIRLLPKCNHR-FHVACIDKWLLSHSSCPTCRQRLK 127 (141)
Q Consensus 78 ~~~C~ICl~~~~~~~~v~~lp~C~H~-Fh~~Ci~~wl~~~~~CP~CR~~~~ 127 (141)
+..|.||++... .+..+| |||. |+.+|+..|+.++..||+||+++.
T Consensus 2 ~~~C~iC~~~~~---~~~~~p-CgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPR---DVVLLP-CGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBS---SEEEET-TCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCC---ceEEeC-CCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 467999998854 357888 9999 999999999999999999999875
No 10
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.38 E-value=3e-13 Score=70.81 Aligned_cols=39 Identities=41% Similarity=1.057 Sum_probs=32.6
Q ss_pred ccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccc
Q 038049 81 CAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTC 122 (141)
Q Consensus 81 C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~C 122 (141)
|+||++.+.+ .+..++ |||.|+.+|+..|++.+..||+|
T Consensus 1 C~iC~~~~~~--~~~~~~-CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTP-CGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECT-TSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC--cCEECC-CCCchhHHHHHHHHHCcCCCcCC
Confidence 8999998765 445777 99999999999999999999998
No 11
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=99.38 E-value=4e-13 Score=71.95 Aligned_cols=44 Identities=50% Similarity=1.185 Sum_probs=36.8
Q ss_pred cccccccccccCCceeecCCCCCcccHhhHHHHHcC-CCccccccccc
Q 038049 80 GCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLS-HSSCPTCRQRL 126 (141)
Q Consensus 80 ~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~-~~~CP~CR~~~ 126 (141)
+|+||++.+ .+.+...+ |||.||.+|+..|+.. +..||.||..+
T Consensus 1 ~C~iC~~~~--~~~~~~~~-C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEF--REPVVLLP-CGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhh--hCceEecC-CCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 599999998 34455665 9999999999999987 77899999864
No 12
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=1.1e-12 Score=92.02 Aligned_cols=55 Identities=27% Similarity=0.653 Sum_probs=43.5
Q ss_pred CCCcccccccccccccCCceeecCCCCCcccHhhHHHHHcCC---CccccccccccCCCCCC
Q 038049 75 SSASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSH---SSCPTCRQRLKPSDAMP 133 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~---~~CP~CR~~~~~~~~~~ 133 (141)
....-+|.||||.-+++ .++. |||+||+-||.+|+..+ +.||+|+..+..++.+|
T Consensus 44 ~~~~FdCNICLd~akdP---VvTl-CGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvP 101 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDP---VVTL-CGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVP 101 (230)
T ss_pred CCCceeeeeeccccCCC---EEee-cccceehHHHHHHHhhcCCCeeCCccccccccceEEe
Confidence 45567899999886555 5666 99999999999999753 55999999887665443
No 13
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=99.29 E-value=2.5e-12 Score=77.33 Aligned_cols=52 Identities=42% Similarity=0.902 Sum_probs=38.6
Q ss_pred ccccccccccccc--------CCc-eeecCCCCCcccHhhHHHHHcC---CCccccccccccCC
Q 038049 78 SAGCAICLLDFID--------GDE-IRLLPKCNHRFHVACIDKWLLS---HSSCPTCRQRLKPS 129 (141)
Q Consensus 78 ~~~C~ICl~~~~~--------~~~-v~~lp~C~H~Fh~~Ci~~wl~~---~~~CP~CR~~~~~~ 129 (141)
++.|.||...|+. ++. ..+...|+|.||.+||..|+.+ +..||+||++..-+
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~k 84 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKFK 84 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeeeC
Confidence 5779999988862 222 1122259999999999999986 46799999987543
No 14
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=1.8e-12 Score=87.46 Aligned_cols=58 Identities=28% Similarity=0.590 Sum_probs=46.3
Q ss_pred CCCCCCcccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccCCCC
Q 038049 72 SSPSSASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKPSDA 131 (141)
Q Consensus 72 ~~~~~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~~~ 131 (141)
...+.+-..|+|||+.+.... ....+|||+||..||..-++....||+||+.+..++.
T Consensus 125 ~~~~~~~~~CPiCl~~~sek~--~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~~ 182 (187)
T KOG0320|consen 125 PLRKEGTYKCPICLDSVSEKV--PVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQF 182 (187)
T ss_pred ccccccccCCCceecchhhcc--ccccccchhHHHHHHHHHHHhCCCCCCcccccchhhh
Confidence 344555678999999986543 3433599999999999999999999999998877654
No 15
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=2.4e-12 Score=102.58 Aligned_cols=50 Identities=38% Similarity=0.930 Sum_probs=44.4
Q ss_pred CcccccccccccccCCc--eeecCCCCCcccHhhHHHHHcCCCcccccccccc
Q 038049 77 ASAGCAICLLDFIDGDE--IRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLK 127 (141)
Q Consensus 77 ~~~~C~ICl~~~~~~~~--v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~ 127 (141)
.+..|+||+|++..+.+ ...+| |||+||..|+..|++++++||.||..+.
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~-C~Hifh~~CL~~W~er~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLP-CGHIFHDSCLRSWFERQQTCPTCRTVLY 341 (543)
T ss_pred cCCeeeeechhhccccccccceee-cccchHHHHHHHHHHHhCcCCcchhhhh
Confidence 46789999999988765 67888 9999999999999999999999999544
No 16
>PHA02926 zinc finger-like protein; Provisional
Probab=99.26 E-value=2.9e-12 Score=89.51 Aligned_cols=52 Identities=35% Similarity=0.816 Sum_probs=39.2
Q ss_pred CCcccccccccccccC-----CceeecCCCCCcccHhhHHHHHcCC------Ccccccccccc
Q 038049 76 SASAGCAICLLDFIDG-----DEIRLLPKCNHRFHVACIDKWLLSH------SSCPTCRQRLK 127 (141)
Q Consensus 76 ~~~~~C~ICl~~~~~~-----~~v~~lp~C~H~Fh~~Ci~~wl~~~------~~CP~CR~~~~ 127 (141)
..+.+|+||||...+. ..-.+++.|+|.||..||..|...+ .+||+||..+.
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 3457899999886432 1223565699999999999998753 45999999775
No 17
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=99.25 E-value=5.3e-12 Score=67.78 Aligned_cols=44 Identities=32% Similarity=0.761 Sum_probs=38.1
Q ss_pred cccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccc
Q 038049 80 GCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQ 124 (141)
Q Consensus 80 ~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~ 124 (141)
.|+||+++|.+.....+++ |||+|+..|+..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~-CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTS-CGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcc-cCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 4999999996666677887 9999999999999866778999985
No 18
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.23 E-value=5.9e-12 Score=66.81 Aligned_cols=38 Identities=42% Similarity=0.934 Sum_probs=29.4
Q ss_pred ccccccccccCCceeecCCCCCcccHhhHHHHHcCC----Cccccc
Q 038049 81 CAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSH----SSCPTC 122 (141)
Q Consensus 81 C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~----~~CP~C 122 (141)
|+||++.|.++ ..++ |||.|+..||..|++.. ..||.|
T Consensus 1 CpiC~~~~~~P---v~l~-CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP---VSLP-CGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE---EE-S-SSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCc---cccC-CcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999887 6777 99999999999999764 359987
No 19
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.20 E-value=1.5e-11 Score=70.95 Aligned_cols=52 Identities=35% Similarity=0.590 Sum_probs=45.0
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccCCCCCCC
Q 038049 79 AGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKPSDAMPS 134 (141)
Q Consensus 79 ~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~~~~~~ 134 (141)
-.|+||++.+.++ ..++ |||+|+..||.+|+..+..||.|+.++..++..++
T Consensus 2 ~~Cpi~~~~~~~P---v~~~-~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~~ 53 (63)
T smart00504 2 FLCPISLEVMKDP---VILP-SGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIPN 53 (63)
T ss_pred cCCcCCCCcCCCC---EECC-CCCEEeHHHHHHHHHHCCCCCCCcCCCChhhceeC
Confidence 3599999999876 5677 99999999999999988899999999977666655
No 20
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=99.20 E-value=8.3e-12 Score=65.96 Aligned_cols=39 Identities=49% Similarity=1.091 Sum_probs=33.1
Q ss_pred ccccccccccCCceeecCCCCCcccHhhHHHHHc--CCCccccc
Q 038049 81 CAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLL--SHSSCPTC 122 (141)
Q Consensus 81 C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~--~~~~CP~C 122 (141)
|+||++.+.++. ..++ |||.|+.+|+..|++ ....||.|
T Consensus 1 C~iC~~~~~~~~--~~~~-C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV--ILLP-CGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE--EETT-TSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC--EEec-CCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999986653 5777 999999999999998 45679987
No 21
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=99.13 E-value=4.3e-11 Score=61.79 Aligned_cols=38 Identities=45% Similarity=1.137 Sum_probs=31.9
Q ss_pred ccccccccccCCceeecCCCCCcccHhhHHHHHc-CCCccccc
Q 038049 81 CAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLL-SHSSCPTC 122 (141)
Q Consensus 81 C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~-~~~~CP~C 122 (141)
|+||++. ......++ |||.||..|++.|+. .+..||.|
T Consensus 1 C~iC~~~---~~~~~~~~-C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEE---LKDPVVLP-CGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccC---CCCcEEec-CCChHHHHHHHHHHHhCcCCCCCC
Confidence 7899988 34457787 999999999999998 56679987
No 22
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.07 E-value=1.1e-10 Score=89.08 Aligned_cols=52 Identities=33% Similarity=0.592 Sum_probs=44.1
Q ss_pred CCcccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccCCCC
Q 038049 76 SASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKPSDA 131 (141)
Q Consensus 76 ~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~~~ 131 (141)
.....|+||++.|..+ .+++ |||.||..||..|+.....||+||..+.....
T Consensus 24 e~~l~C~IC~d~~~~P---vitp-CgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~L 75 (397)
T TIGR00599 24 DTSLRCHICKDFFDVP---VLTS-CSHTFCSLCIRRCLSNQPKCPLCRAEDQESKL 75 (397)
T ss_pred ccccCCCcCchhhhCc---cCCC-CCCchhHHHHHHHHhCCCCCCCCCCccccccC
Confidence 4457899999999766 4677 99999999999999988889999999876543
No 23
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=9e-11 Score=90.15 Aligned_cols=51 Identities=33% Similarity=0.800 Sum_probs=39.8
Q ss_pred CcccccccccccccC--------------CceeecCCCCCcccHhhHHHHHcC-CCccccccccccC
Q 038049 77 ASAGCAICLLDFIDG--------------DEIRLLPKCNHRFHVACIDKWLLS-HSSCPTCRQRLKP 128 (141)
Q Consensus 77 ~~~~C~ICl~~~~~~--------------~~v~~lp~C~H~Fh~~Ci~~wl~~-~~~CP~CR~~~~~ 128 (141)
....|+|||.++.-. ..-..+| |.|+||.+|+..|+.+ +-.||+||.++++
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tP-C~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTP-CHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccc-hHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 346799999887421 1234567 9999999999999995 5589999998864
No 24
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=99.00 E-value=2.5e-10 Score=67.15 Aligned_cols=30 Identities=43% Similarity=0.850 Sum_probs=27.4
Q ss_pred CCCCcccHhhHHHHHcCCCccccccccccC
Q 038049 99 KCNHRFHVACIDKWLLSHSSCPTCRQRLKP 128 (141)
Q Consensus 99 ~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~ 128 (141)
.|+|.||.+||..||.++..||++|+...-
T Consensus 53 ~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~ 82 (88)
T COG5194 53 VCNHAFHDHCIYRWLDTKGVCPLDRQTWVL 82 (88)
T ss_pred ecchHHHHHHHHHHHhhCCCCCCCCceeEE
Confidence 399999999999999999999999997653
No 25
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=1.2e-10 Score=83.43 Aligned_cols=55 Identities=27% Similarity=0.660 Sum_probs=44.6
Q ss_pred CCCcccccccccccccCC-------ceeecCCCCCcccHhhHHHHHc--CCCccccccccccCCC
Q 038049 75 SSASAGCAICLLDFIDGD-------EIRLLPKCNHRFHVACIDKWLL--SHSSCPTCRQRLKPSD 130 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~-------~v~~lp~C~H~Fh~~Ci~~wl~--~~~~CP~CR~~~~~~~ 130 (141)
..++..|+||-..+.... +...+. |+|+||+.||+-|.. ++++||.|+..+..+.
T Consensus 221 hl~d~vCaVCg~~~~~s~~eegvienty~Ls-CnHvFHEfCIrGWcivGKkqtCPYCKekVdl~r 284 (328)
T KOG1734|consen 221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLS-CNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKR 284 (328)
T ss_pred CCCcchhHhhcchheeecchhhhhhhheeee-cccchHHHhhhhheeecCCCCCchHHHHhhHhh
Confidence 445678999998886654 567787 999999999999964 5789999999886553
No 26
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=2.2e-10 Score=81.89 Aligned_cols=52 Identities=29% Similarity=0.675 Sum_probs=42.8
Q ss_pred CCcccccccccccccCCceeecCCCCCcccHhhHHH-HHcCCCc-cccccccccCCCC
Q 038049 76 SASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDK-WLLSHSS-CPTCRQRLKPSDA 131 (141)
Q Consensus 76 ~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~-wl~~~~~-CP~CR~~~~~~~~ 131 (141)
..+.+|+||++....+ ..+| |||+||..||-. |-.++.. ||+||+-...++.
T Consensus 213 ~~d~kC~lC~e~~~~p---s~t~-CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v 266 (271)
T COG5574 213 LADYKCFLCLEEPEVP---SCTP-CGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV 266 (271)
T ss_pred ccccceeeeecccCCc---cccc-ccchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence 4578899999886665 6787 999999999999 9776655 9999998776653
No 27
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=4e-10 Score=65.72 Aligned_cols=51 Identities=39% Similarity=0.855 Sum_probs=36.5
Q ss_pred ccccccccccccc--------CCcee-ecCCCCCcccHhhHHHHHcCC---CccccccccccC
Q 038049 78 SAGCAICLLDFID--------GDEIR-LLPKCNHRFHVACIDKWLLSH---SSCPTCRQRLKP 128 (141)
Q Consensus 78 ~~~C~ICl~~~~~--------~~~v~-~lp~C~H~Fh~~Ci~~wl~~~---~~CP~CR~~~~~ 128 (141)
+++|.||.-+|.. +|... +.-.|.|.||..||.+|+..+ ..||.||+...-
T Consensus 20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQF 82 (84)
T ss_pred CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEe
Confidence 3479999888842 23211 222499999999999999764 459999997643
No 28
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.86 E-value=7.7e-10 Score=81.69 Aligned_cols=51 Identities=35% Similarity=0.688 Sum_probs=45.6
Q ss_pred cccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccCCCCC
Q 038049 78 SAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKPSDAM 132 (141)
Q Consensus 78 ~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~~~~ 132 (141)
-..|.||.+.|..+ .++| |+|.||.-||+.+|..+..||.|+.++.+....
T Consensus 23 lLRC~IC~eyf~ip---~itp-CsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~Lr 73 (442)
T KOG0287|consen 23 LLRCGICFEYFNIP---MITP-CSHTFCSLCIRKFLSYKPQCPTCCVTVTESDLR 73 (442)
T ss_pred HHHHhHHHHHhcCc---eecc-ccchHHHHHHHHHhccCCCCCceecccchhhhh
Confidence 36799999999888 7888 999999999999999999999999988876543
No 29
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.82 E-value=2.7e-09 Score=58.34 Aligned_cols=42 Identities=26% Similarity=0.740 Sum_probs=32.7
Q ss_pred cccccccccccCCceeecCCCC-----CcccHhhHHHHHcC--CCcccccc
Q 038049 80 GCAICLLDFIDGDEIRLLPKCN-----HRFHVACIDKWLLS--HSSCPTCR 123 (141)
Q Consensus 80 ~C~ICl~~~~~~~~v~~lp~C~-----H~Fh~~Ci~~wl~~--~~~CP~CR 123 (141)
.|.||++ ..+++.....| |. |.+|.+|+..|+.. +.+||+|+
T Consensus 1 ~CrIC~~-~~~~~~~l~~P-C~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD-EGDEGDPLVSP-CRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC-CCCCCCeeEec-cccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 3899998 34455556788 85 89999999999965 45799995
No 30
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=2.2e-09 Score=83.07 Aligned_cols=52 Identities=31% Similarity=0.585 Sum_probs=41.5
Q ss_pred cccccccccccccCCceeecCCCCCcccHhhHHHHHcCC-----CccccccccccCCCCCC
Q 038049 78 SAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSH-----SSCPTCRQRLKPSDAMP 133 (141)
Q Consensus 78 ~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~-----~~CP~CR~~~~~~~~~~ 133 (141)
+..|+|||++...+ ..+. |||+||..||-.++... ..||+||..+..++..|
T Consensus 186 ~~~CPICL~~~~~p---~~t~-CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~p 242 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP---VRTN-CGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLP 242 (513)
T ss_pred CCcCCcccCCCCcc---cccc-cCceeeHHHHHHHHhhhcccCCccCCchhhhccccceee
Confidence 67899999886555 4454 99999999999998754 45999999998866443
No 31
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=98.79 E-value=9.2e-10 Score=64.77 Aligned_cols=51 Identities=31% Similarity=0.809 Sum_probs=24.2
Q ss_pred cccccccccccccCCc--eeec--CCCCCcccHhhHHHHHcC---CC--------ccccccccccC
Q 038049 78 SAGCAICLLDFIDGDE--IRLL--PKCNHRFHVACIDKWLLS---HS--------SCPTCRQRLKP 128 (141)
Q Consensus 78 ~~~C~ICl~~~~~~~~--v~~l--p~C~H~Fh~~Ci~~wl~~---~~--------~CP~CR~~~~~ 128 (141)
+.+|.||++...+++. ...- +.|++.||..||.+|+.. .+ .||.|++++.-
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 4679999988763322 1222 259999999999999963 11 39999998754
No 32
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.76 E-value=7.2e-09 Score=54.98 Aligned_cols=34 Identities=32% Similarity=0.697 Sum_probs=21.4
Q ss_pred ccccccccccCC-ceeecCCCCCcccHhhHHHHHcCC
Q 038049 81 CAICLLDFIDGD-EIRLLPKCNHRFHVACIDKWLLSH 116 (141)
Q Consensus 81 C~ICl~~~~~~~-~v~~lp~C~H~Fh~~Ci~~wl~~~ 116 (141)
|+||.+ |.+.+ ...+|+ |||+|+.+|++.++.++
T Consensus 1 CpIc~e-~~~~~n~P~~L~-CGH~~c~~cl~~l~~~~ 35 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLP-CGHVFCKDCLQKLSKKS 35 (43)
T ss_dssp -TTT-----TTSS-EEE-S-SS-EEEHHHHHHHHHH-
T ss_pred CCcccc-ccCCCCCCEEEe-CccHHHHHHHHHHHhcC
Confidence 899999 75544 457798 99999999999999753
No 33
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.74 E-value=4.5e-09 Score=62.37 Aligned_cols=56 Identities=29% Similarity=0.432 Sum_probs=43.2
Q ss_pred cccccccccccccCCceeecCCCCCcccHhhHHHHHcC-CCccccccccccCCCCCCCchh
Q 038049 78 SAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLS-HSSCPTCRQRLKPSDAMPSLDE 137 (141)
Q Consensus 78 ~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~-~~~CP~CR~~~~~~~~~~~~~~ 137 (141)
.-.|+|+.+-|.++ .++| +||.|...+|..|+.. +..||.|++++...+..|+...
T Consensus 4 ~f~CpIt~~lM~dP---Vi~~-~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~L 60 (73)
T PF04564_consen 4 EFLCPITGELMRDP---VILP-SGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRAL 60 (73)
T ss_dssp GGB-TTTSSB-SSE---EEET-TSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHH
T ss_pred ccCCcCcCcHhhCc---eeCC-cCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHH
Confidence 35799999999887 6777 9999999999999998 8899999999998888777443
No 34
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.74 E-value=4.9e-09 Score=79.92 Aligned_cols=50 Identities=36% Similarity=0.791 Sum_probs=40.7
Q ss_pred CCCcccccccccccccCCc-eeecCCCCCcccHhhHHHHHcCCCcccccccccc
Q 038049 75 SSASAGCAICLLDFIDGDE-IRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLK 127 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~-v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~ 127 (141)
..+-++|++||+.+++.-. +.... |.|.||..|+..| ...+||+||--..
T Consensus 172 ~tELPTCpVCLERMD~s~~gi~t~~-c~Hsfh~~cl~~w--~~~scpvcR~~q~ 222 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDSSTTGILTIL-CNHSFHCSCLMKW--WDSSCPVCRYCQS 222 (493)
T ss_pred cccCCCcchhHhhcCccccceeeee-cccccchHHHhhc--ccCcChhhhhhcC
Confidence 4567899999999977653 44454 9999999999999 5689999997555
No 35
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.73 E-value=9e-09 Score=75.94 Aligned_cols=53 Identities=23% Similarity=0.587 Sum_probs=39.0
Q ss_pred cccccccccc-ccCC-ceeecCCCCCcccHhhHHHHHcC-CCccccccccccCCCCC
Q 038049 79 AGCAICLLDF-IDGD-EIRLLPKCNHRFHVACIDKWLLS-HSSCPTCRQRLKPSDAM 132 (141)
Q Consensus 79 ~~C~ICl~~~-~~~~-~v~~lp~C~H~Fh~~Ci~~wl~~-~~~CP~CR~~~~~~~~~ 132 (141)
..||+|...- ..++ .+.+.+ |||.||..|++..+.. ...||.|+.++..+.-.
T Consensus 4 ~~CP~Ck~~~y~np~~kl~i~~-CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr 59 (309)
T TIGR00570 4 QGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFR 59 (309)
T ss_pred CCCCcCCCCCccCcccccccCC-CCCcccHHHHHHHhcCCCCCCCCCCCccchhhcc
Confidence 5799999853 2333 333445 9999999999996644 56799999998876633
No 36
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=4.3e-09 Score=64.93 Aligned_cols=50 Identities=32% Similarity=0.731 Sum_probs=36.8
Q ss_pred Ccccccccccccc------------cCCce--eecCCCCCcccHhhHHHHHcCCCcccccccccc
Q 038049 77 ASAGCAICLLDFI------------DGDEI--RLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLK 127 (141)
Q Consensus 77 ~~~~C~ICl~~~~------------~~~~v--~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~ 127 (141)
..+.|+||...+- ..++. .-- .|+|.||..||..|++++..||+|.++-.
T Consensus 45 ~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG-~CNHaFH~hCisrWlktr~vCPLdn~eW~ 108 (114)
T KOG2930|consen 45 VVDNCAICRNHIMDLCIECQANQSATSEECTVAWG-VCNHAFHFHCISRWLKTRNVCPLDNKEWV 108 (114)
T ss_pred eechhHHHHHHHHHHHHhhccCCCCCCCceEEEee-ecchHHHHHHHHHHHhhcCcCCCcCccee
Confidence 3567999985541 12222 222 39999999999999999999999987643
No 37
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.69 E-value=7.4e-09 Score=75.18 Aligned_cols=49 Identities=29% Similarity=0.526 Sum_probs=42.4
Q ss_pred CcccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccCC
Q 038049 77 ASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKPS 129 (141)
Q Consensus 77 ~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~ 129 (141)
....|-||-+.+..+ ..++ |||.||.-||...|..+..||+||.+..+.
T Consensus 24 s~lrC~IC~~~i~ip---~~Tt-CgHtFCslCIR~hL~~qp~CP~Cr~~~~es 72 (391)
T COG5432 24 SMLRCRICDCRISIP---CETT-CGHTFCSLCIRRHLGTQPFCPVCREDPCES 72 (391)
T ss_pred hHHHhhhhhheeecc---eecc-cccchhHHHHHHHhcCCCCCccccccHHhh
Confidence 346799999888776 5677 999999999999999999999999977644
No 38
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.56 E-value=1.9e-08 Score=82.80 Aligned_cols=52 Identities=33% Similarity=0.803 Sum_probs=38.3
Q ss_pred CCcccccccccccc-cCCce--eecCCCCCcccHhhHHHHHcC--CCcccccccccc
Q 038049 76 SASAGCAICLLDFI-DGDEI--RLLPKCNHRFHVACIDKWLLS--HSSCPTCRQRLK 127 (141)
Q Consensus 76 ~~~~~C~ICl~~~~-~~~~v--~~lp~C~H~Fh~~Ci~~wl~~--~~~CP~CR~~~~ 127 (141)
.+..+|+||...+. .+... ...+.|.|.||..|+..|+.+ +.+||+||.+++
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 45789999998775 22111 122248999999999999986 467999998764
No 39
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=3.3e-08 Score=73.62 Aligned_cols=49 Identities=29% Similarity=0.724 Sum_probs=41.0
Q ss_pred CCcccccccccccccCCceeecCCCCCc-ccHhhHHHHHcCCCccccccccccC
Q 038049 76 SASAGCAICLLDFIDGDEIRLLPKCNHR-FHVACIDKWLLSHSSCPTCRQRLKP 128 (141)
Q Consensus 76 ~~~~~C~ICl~~~~~~~~v~~lp~C~H~-Fh~~Ci~~wl~~~~~CP~CR~~~~~ 128 (141)
++..+|.|||++-. .+.++| |.|. .|.+|-+...-....||+||+++.+
T Consensus 288 ~~gkeCVIClse~r---dt~vLP-CRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSESR---DTVVLP-CRHLCLCSGCAKSLRYQTNNCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecCCc---ceEEec-chhhehhHhHHHHHHHhhcCCCccccchHh
Confidence 44678999998843 347899 9999 9999999987678889999998864
No 40
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.54 E-value=1.6e-08 Score=57.50 Aligned_cols=48 Identities=29% Similarity=0.590 Sum_probs=24.2
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccCCCC
Q 038049 79 AGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKPSDA 131 (141)
Q Consensus 79 ~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~~~ 131 (141)
-.|++|.+-+..+ +... .|.|+|+..||..-+. ..||+|+.+...++.
T Consensus 8 LrCs~C~~~l~~p--v~l~-~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~qD~ 55 (65)
T PF14835_consen 8 LRCSICFDILKEP--VCLG-GCEHIFCSSCIRDCIG--SECPVCHTPAWIQDI 55 (65)
T ss_dssp TS-SSS-S--SS---B----SSS--B-TTTGGGGTT--TB-SSS--B-S-SS-
T ss_pred cCCcHHHHHhcCC--ceec-cCccHHHHHHhHHhcC--CCCCCcCChHHHHHH
Confidence 4699999988665 3334 5999999999988544 459999999877653
No 41
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=3.3e-08 Score=72.62 Aligned_cols=46 Identities=39% Similarity=0.797 Sum_probs=40.0
Q ss_pred CCCcccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccc
Q 038049 75 SSASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQ 124 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~ 124 (141)
..+...|+||++.|..+ ..+| |||.||..|+..++.....||.||.
T Consensus 10 ~~~~~~C~iC~~~~~~p---~~l~-C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREP---VLLP-CGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccccChhhHHHhhcC---cccc-ccchHhHHHHHHhcCCCcCCcccCC
Confidence 34557899999999888 7888 9999999999999886677999994
No 42
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=3.6e-08 Score=74.09 Aligned_cols=50 Identities=30% Similarity=0.830 Sum_probs=35.6
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHHHcCC---CccccccccccC
Q 038049 79 AGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSH---SSCPTCRQRLKP 128 (141)
Q Consensus 79 ~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~---~~CP~CR~~~~~ 128 (141)
..|.||-+-+.....+.-...|||+||..|+..|+..- ..||.||-.+..
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~ 57 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQE 57 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccc
Confidence 56999944444444444443499999999999999863 569999943433
No 43
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=4.6e-08 Score=53.52 Aligned_cols=45 Identities=31% Similarity=0.671 Sum_probs=34.2
Q ss_pred ccccccccccccCCceeecCCCCCc-ccHhhHHHHHc-CCCcccccccccc
Q 038049 79 AGCAICLLDFIDGDEIRLLPKCNHR-FHVACIDKWLL-SHSSCPTCRQRLK 127 (141)
Q Consensus 79 ~~C~ICl~~~~~~~~v~~lp~C~H~-Fh~~Ci~~wl~-~~~~CP~CR~~~~ 127 (141)
.+|.||+|.-.+ .|..+ |||. .+.+|-.+-++ .+..||+||+++.
T Consensus 8 dECTICye~pvd--sVlYt--CGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPVD--SVLYT--CGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcch--HHHHH--cchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 789999987433 33333 9998 89999766555 6788999999874
No 44
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=3.4e-08 Score=73.43 Aligned_cols=53 Identities=36% Similarity=0.647 Sum_probs=44.3
Q ss_pred CCcccccccccccccCCceeecCCCCCcccHhhHHHHHcC-CCccccccccccCCCC
Q 038049 76 SASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLS-HSSCPTCRQRLKPSDA 131 (141)
Q Consensus 76 ~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~-~~~CP~CR~~~~~~~~ 131 (141)
..+..|+|||+-++.. +.++.|.|.||.+||..-++. +..||.||+.+..+..
T Consensus 41 ~~~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Skrs 94 (381)
T KOG0311|consen 41 DIQVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRS 94 (381)
T ss_pred hhhhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccccc
Confidence 3467899999988766 667789999999999998865 6889999999987643
No 45
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=6.7e-07 Score=67.79 Aligned_cols=48 Identities=31% Similarity=0.784 Sum_probs=37.6
Q ss_pred cccccccccccccCC-ceeecCCCCCcccHhhHHHHHcC--CCcccccccc
Q 038049 78 SAGCAICLLDFIDGD-EIRLLPKCNHRFHVACIDKWLLS--HSSCPTCRQR 125 (141)
Q Consensus 78 ~~~C~ICl~~~~~~~-~v~~lp~C~H~Fh~~Ci~~wl~~--~~~CP~CR~~ 125 (141)
..+|+||++.+..+- .....++|||.|..+||+.|+.+ ...||.|...
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~k 54 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGK 54 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCCh
Confidence 468999999997654 44445579999999999999963 3459999654
No 46
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=6.8e-07 Score=67.33 Aligned_cols=52 Identities=37% Similarity=0.852 Sum_probs=39.5
Q ss_pred CCcccccccccccccCC----ceeecCCCCCcccHhhHHHHHc--C-----CCcccccccccc
Q 038049 76 SASAGCAICLLDFIDGD----EIRLLPKCNHRFHVACIDKWLL--S-----HSSCPTCRQRLK 127 (141)
Q Consensus 76 ~~~~~C~ICl~~~~~~~----~v~~lp~C~H~Fh~~Ci~~wl~--~-----~~~CP~CR~~~~ 127 (141)
..+.+|.|||+...+.. .-..+|+|.|.||.+||+.|-. + .+.||.||....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 45788999998875543 1234577999999999999973 3 367999998553
No 47
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.18 E-value=3.3e-07 Score=74.37 Aligned_cols=51 Identities=24% Similarity=0.432 Sum_probs=41.7
Q ss_pred CcccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccC
Q 038049 77 ASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKP 128 (141)
Q Consensus 77 ~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~ 128 (141)
....|++|+..+.++......+ |+|.||..||..|-+...+||+||..+..
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~-c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKH-TAHYFCEECVGSWSRCAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccc-cccccHHHHhhhhhhhcccCchhhhhhhe
Confidence 3556888888776665555565 99999999999999999999999997753
No 48
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=5.5e-07 Score=72.86 Aligned_cols=51 Identities=24% Similarity=0.634 Sum_probs=40.4
Q ss_pred cccccccccccccCCceeecCCCCCcccHhhHHHHHcC-CCccccccccccCCCCC
Q 038049 78 SAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLS-HSSCPTCRQRLKPSDAM 132 (141)
Q Consensus 78 ~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~-~~~CP~CR~~~~~~~~~ 132 (141)
--+|+.|-+...+. .++ .|||+||..|+..-+.. +..||.|.+++..++..
T Consensus 643 ~LkCs~Cn~R~Kd~---vI~-kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~ 694 (698)
T KOG0978|consen 643 LLKCSVCNTRWKDA---VIT-KCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVH 694 (698)
T ss_pred ceeCCCccCchhhH---HHH-hcchHHHHHHHHHHHHHhcCCCCCCCCCCCccccc
Confidence 35799998665543 334 49999999999999874 67899999999887644
No 49
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=98.11 E-value=1e-06 Score=64.47 Aligned_cols=55 Identities=31% Similarity=0.853 Sum_probs=44.4
Q ss_pred CCCcccccccccccccCCceeecCCCCCcccHhhHHHHHcC-----------------------CCccccccccccCCC
Q 038049 75 SSASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLS-----------------------HSSCPTCRQRLKPSD 130 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~-----------------------~~~CP~CR~~~~~~~ 130 (141)
+-....|+|||.-|.+++...+++ |.|.||..|+..+|.. +..||+||..+....
T Consensus 112 n~p~gqCvICLygfa~~~~ft~T~-C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~ 189 (368)
T KOG4445|consen 112 NHPNGQCVICLYGFASSPAFTVTA-CDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEE 189 (368)
T ss_pred CCCCCceEEEEEeecCCCceeeeh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccccc
Confidence 344567999999999999899998 9999999999987721 123999999886543
No 50
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=98.06 E-value=2.5e-06 Score=65.79 Aligned_cols=57 Identities=32% Similarity=0.703 Sum_probs=47.0
Q ss_pred CCCcccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccCCCCCCC
Q 038049 75 SSASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKPSDAMPS 134 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~~~~~~ 134 (141)
.+.+..|++|+..+.++-.. +. |||.||..|+..|+..+..||.||.++...+..+.
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~--~~-cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~~~ 74 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQT--TT-CGHRFCAGCLLESLSNHQKCPVCRQELTQAEELPV 74 (391)
T ss_pred CcccccCccccccccCCCCC--CC-CCCcccccccchhhccCcCCcccccccchhhccCc
Confidence 35557899999998777221 34 99999999999999999999999999987777763
No 51
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=2.6e-06 Score=62.35 Aligned_cols=49 Identities=24% Similarity=0.461 Sum_probs=38.7
Q ss_pred CcccccccccccccCCceeecCCCCCcccHhhHHHHHcC-CCccccccccccCC
Q 038049 77 ASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLS-HSSCPTCRQRLKPS 129 (141)
Q Consensus 77 ~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~-~~~CP~CR~~~~~~ 129 (141)
-..+|+||+....-+ ..++ |+|.||.-||.--... +.+||+||.++.+.
T Consensus 6 ~~~eC~IC~nt~n~P---v~l~-C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 6 KKKECLICYNTGNCP---VNLY-CFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred cCCcceeeeccCCcC---cccc-ccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 347899999775444 5666 9999999999976554 56799999999765
No 52
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=4.5e-06 Score=58.84 Aligned_cols=55 Identities=31% Similarity=0.725 Sum_probs=45.3
Q ss_pred cccccccccccccCCceeecCCCCCcccHhhHHHHHcC--------CCccccccccccCCCCCCC
Q 038049 78 SAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLS--------HSSCPTCRQRLKPSDAMPS 134 (141)
Q Consensus 78 ~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~--------~~~CP~CR~~~~~~~~~~~ 134 (141)
...|..|-..+..+|.+|.. |-|+||++|+.+|--. ...||.|-.++.++....+
T Consensus 50 ~pNC~LC~t~La~gdt~RLv--CyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~Nlvs 112 (299)
T KOG3970|consen 50 NPNCRLCNTPLASGDTTRLV--CYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPINLVS 112 (299)
T ss_pred CCCCceeCCccccCcceeeh--hhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCccccc
Confidence 35699999999999999886 9999999999999743 3459999999987654433
No 53
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.98 E-value=2e-06 Score=65.11 Aligned_cols=46 Identities=33% Similarity=0.806 Sum_probs=37.8
Q ss_pred cccccccccccccC-CceeecCCCCCcccHhhHHHHHcCC--Cccccccc
Q 038049 78 SAGCAICLLDFIDG-DEIRLLPKCNHRFHVACIDKWLLSH--SSCPTCRQ 124 (141)
Q Consensus 78 ~~~C~ICl~~~~~~-~~v~~lp~C~H~Fh~~Ci~~wl~~~--~~CP~CR~ 124 (141)
+-.|..|-+.+... +.+.-+| |.|+||..|+.+.+.++ ++||.||+
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALp-CsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALP-CSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred hhhhhhhhhhhcCCcccccccc-hhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 35699998888643 4577888 99999999999999764 67999994
No 54
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=8.1e-06 Score=62.76 Aligned_cols=49 Identities=29% Similarity=0.735 Sum_probs=42.6
Q ss_pred CCcccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccC
Q 038049 76 SASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKP 128 (141)
Q Consensus 76 ~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~ 128 (141)
..+-+|.||+.-+.++ ..+| |||.|+..||+.-+.....||.||..+.+
T Consensus 82 ~sef~c~vc~~~l~~p---v~tp-cghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPP---VVTP-CGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCC---cccc-ccccccHHHHHHHhccCCCCccccccccc
Confidence 4567899999888777 6778 99999999999988878889999999876
No 55
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.89 E-value=4.9e-06 Score=63.22 Aligned_cols=46 Identities=30% Similarity=0.823 Sum_probs=37.9
Q ss_pred cccccccccccccCCceeecCCCCCcccHhhHHHHHcC--CCcccccccccc
Q 038049 78 SAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLS--HSSCPTCRQRLK 127 (141)
Q Consensus 78 ~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~--~~~CP~CR~~~~ 127 (141)
-..|-||-+. +..|++-| |||..|..|+..|-.. .+.||.||..+.
T Consensus 369 FeLCKICaen---dKdvkIEP-CGHLlCt~CLa~WQ~sd~gq~CPFCRcEIK 416 (563)
T KOG1785|consen 369 FELCKICAEN---DKDVKIEP-CGHLLCTSCLAAWQDSDEGQTCPFCRCEIK 416 (563)
T ss_pred HHHHHHhhcc---CCCccccc-ccchHHHHHHHhhcccCCCCCCCceeeEec
Confidence 3469999754 55678888 9999999999999744 578999999875
No 56
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=97.89 E-value=9.2e-06 Score=43.79 Aligned_cols=45 Identities=24% Similarity=0.682 Sum_probs=22.8
Q ss_pred ccccccccccCCceeecC-CCCCcccHhhHHHHHc-CCCccccccccc
Q 038049 81 CAICLLDFIDGDEIRLLP-KCNHRFHVACIDKWLL-SHSSCPTCRQRL 126 (141)
Q Consensus 81 C~ICl~~~~~~~~v~~lp-~C~H~Fh~~Ci~~wl~-~~~~CP~CR~~~ 126 (141)
|++|.+++...+. ...| .||+..+..|...-+. .+..||.||++.
T Consensus 1 cp~C~e~~d~~d~-~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDK-DFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCT-T--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCC-ccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 7899999844332 3333 4999999999998876 478899999875
No 57
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.88 E-value=7.9e-06 Score=46.00 Aligned_cols=43 Identities=28% Similarity=0.584 Sum_probs=27.6
Q ss_pred CCcccccccccccccCCceeecCCCCCcccHhhHHHHHcC--CCcccc
Q 038049 76 SASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLS--HSSCPT 121 (141)
Q Consensus 76 ~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~--~~~CP~ 121 (141)
.....|+|.+..|+++ ++-.. |||+|-.+.|.+|+.+ ...||+
T Consensus 9 ~~~~~CPiT~~~~~~P--V~s~~-C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFEDP--VKSKK-CGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SSE--EEESS-S--EEEHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChhhCC--cCcCC-CCCeecHHHHHHHHHhcCCCCCCC
Confidence 3346799999998655 44454 9999999999999944 456998
No 58
>PHA02862 5L protein; Provisional
Probab=97.85 E-value=9.4e-06 Score=53.44 Aligned_cols=56 Identities=18% Similarity=0.398 Sum_probs=42.1
Q ss_pred ccccccccccccCCceeecCCCC-----CcccHhhHHHHHcC--CCccccccccccCCCCCCCchhhh
Q 038049 79 AGCAICLLDFIDGDEIRLLPKCN-----HRFHVACIDKWLLS--HSSCPTCRQRLKPSDAMPSLDEIV 139 (141)
Q Consensus 79 ~~C~ICl~~~~~~~~v~~lp~C~-----H~Fh~~Ci~~wl~~--~~~CP~CR~~~~~~~~~~~~~~~~ 139 (141)
+.|=||.++-+++ .-| |. ..-|.+|+.+|++. +..||+|+.++..+..-.+..+|+
T Consensus 3 diCWIC~~~~~e~----~~P-C~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik~~yKpf~kW~ 65 (156)
T PHA02862 3 DICWICNDVCDER----NNF-CGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIKKTYVSFKKWN 65 (156)
T ss_pred CEEEEecCcCCCC----ccc-ccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEEEccccHHHhh
Confidence 5799999884332 345 54 56899999999975 456999999998777666666663
No 59
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=97.80 E-value=7.6e-06 Score=53.46 Aligned_cols=36 Identities=19% Similarity=0.504 Sum_probs=30.5
Q ss_pred cccccccccccccCCceeecCCCC------CcccHhhHHHHHc
Q 038049 78 SAGCAICLLDFIDGDEIRLLPKCN------HRFHVACIDKWLL 114 (141)
Q Consensus 78 ~~~C~ICl~~~~~~~~v~~lp~C~------H~Fh~~Ci~~wl~ 114 (141)
..+|.||++.+.+.+++...+ || |.||.+|+..|-+
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt-~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVT-DGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEe-cCCeehHHHHHHHHHHHHHHh
Confidence 478999999998866777776 76 9999999999943
No 60
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=8.6e-05 Score=55.13 Aligned_cols=58 Identities=16% Similarity=0.357 Sum_probs=42.4
Q ss_pred eecCCCCCCCCCcccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccc
Q 038049 66 TYANSGSSPSSASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRL 126 (141)
Q Consensus 66 ~~~~~~~~~~~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~ 126 (141)
.+.++.+....+...|++|+..-+++.-+. + =|-+||..|+-.++++...||+=..+.
T Consensus 288 ~~~se~e~l~~~~~~CpvClk~r~Nptvl~-v--SGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 288 QYNSESELLPPDREVCPVCLKKRQNPTVLE-V--SGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred hcccccccCCCccccChhHHhccCCCceEE-e--cceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 344444555667788999998865553222 2 689999999999999999999865443
No 61
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=97.77 E-value=1.9e-05 Score=52.89 Aligned_cols=60 Identities=18% Similarity=0.423 Sum_probs=43.1
Q ss_pred CCCcccccccccccccCCceeecC-CCCC---cccHhhHHHHHcC--CCccccccccccCCCCCCCchhh
Q 038049 75 SSASAGCAICLLDFIDGDEIRLLP-KCNH---RFHVACIDKWLLS--HSSCPTCRQRLKPSDAMPSLDEI 138 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v~~lp-~C~H---~Fh~~Ci~~wl~~--~~~CP~CR~~~~~~~~~~~~~~~ 138 (141)
+..+..|-||.++.. +. ..| .|.. .-|.+|++.|+.. ..+||.|+.++.-+....++.+|
T Consensus 5 s~~~~~CRIC~~~~~--~~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~~~~kpl~~W 70 (162)
T PHA02825 5 SLMDKCCWICKDEYD--VV--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIKKNYKKCTKW 70 (162)
T ss_pred CCCCCeeEecCCCCC--Cc--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEEEecCCCccc
Confidence 445678999998843 22 245 2444 5699999999975 45699999999877666666666
No 62
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.58 E-value=1.7e-05 Score=58.81 Aligned_cols=52 Identities=31% Similarity=0.648 Sum_probs=43.6
Q ss_pred CCcccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccCCC
Q 038049 76 SASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKPSD 130 (141)
Q Consensus 76 ~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~~ 130 (141)
....+|.+|-+.|.+...+. .|-|.||..||..++.....||.|...+....
T Consensus 13 n~~itC~LC~GYliDATTI~---eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~ 64 (331)
T KOG2660|consen 13 NPHITCRLCGGYLIDATTIT---ECLHTFCKSCIVKYLEESKYCPTCDIVIHKTH 64 (331)
T ss_pred ccceehhhccceeecchhHH---HHHHHHHHHHHHHHHHHhccCCccceeccCcc
Confidence 44578999999998885544 49999999999999999999999988775443
No 63
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.00011 Score=53.44 Aligned_cols=51 Identities=20% Similarity=0.423 Sum_probs=38.2
Q ss_pred CCCCcccccccccccccCCceeecCCCCCcccHhhHHHHHcCC--Ccccccccccc
Q 038049 74 PSSASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSH--SSCPTCRQRLK 127 (141)
Q Consensus 74 ~~~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~--~~CP~CR~~~~ 127 (141)
....+.+|++|-+.-..+ -...+ |||+||.-|+..=+... -+||.|-.+..
T Consensus 235 ~~t~~~~C~~Cg~~PtiP--~~~~~-C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 235 TGTSDTECPVCGEPPTIP--HVIGK-CGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cccCCceeeccCCCCCCC--eeecc-ccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 356678999998764433 23344 99999999999876643 57999988776
No 64
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=2.4e-05 Score=52.51 Aligned_cols=32 Identities=38% Similarity=0.730 Sum_probs=28.4
Q ss_pred CCCcccccccccccccCCceeecCCCCCcccHh
Q 038049 75 SSASAGCAICLLDFIDGDEIRLLPKCNHRFHVA 107 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~ 107 (141)
.++..+|.||||++..++.+..|| |-.+||+.
T Consensus 174 ~ddkGECvICLEdL~~GdtIARLP-CLCIYHK~ 205 (205)
T KOG0801|consen 174 KDDKGECVICLEDLEAGDTIARLP-CLCIYHKQ 205 (205)
T ss_pred cccCCcEEEEhhhccCCCceeccc-eEEEeecC
Confidence 445679999999999999999999 99999963
No 65
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=97.51 E-value=7.2e-05 Score=64.92 Aligned_cols=66 Identities=27% Similarity=0.646 Sum_probs=47.9
Q ss_pred hCCceeecCCCCCCCCCcccccccccccccCCceeecCCCCCcccHhhHHHHHcCC----------CccccccccccC
Q 038049 61 ALPTVTYANSGSSPSSASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSH----------SSCPTCRQRLKP 128 (141)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~----------~~CP~CR~~~~~ 128 (141)
-+|...-.++.. ..+.++-|.||+.+--.....+.+. |+|+||-+|.+.-|++. -+||+|..++..
T Consensus 3470 CLPCl~Cdks~t-kQD~DDmCmICFTE~L~AAP~IqL~-C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3470 CLPCLHCDKSAT-KQDADDMCMICFTEALSAAPAIQLD-CSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred cccccccChhhh-hcccCceEEEEehhhhCCCcceecC-CccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 355555333322 3455677999998877777788887 99999999999877653 149999988753
No 66
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.41 E-value=6.8e-05 Score=59.07 Aligned_cols=56 Identities=25% Similarity=0.547 Sum_probs=42.6
Q ss_pred CCCcccccccccccccCCceeecCCCCCcccHhhHHHHHcC-----CCccccccccccCCCCCCC
Q 038049 75 SSASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLS-----HSSCPTCRQRLKPSDAMPS 134 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~-----~~~CP~CR~~~~~~~~~~~ 134 (141)
+.+..+|-+|-++-++. ..+. |.|.||.-|+.+++.. +-+||.|...+......|.
T Consensus 533 nk~~~~C~lc~d~aed~---i~s~-ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~a 593 (791)
T KOG1002|consen 533 NKGEVECGLCHDPAEDY---IESS-CHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPA 593 (791)
T ss_pred ccCceeecccCChhhhh---Hhhh-hhHHHHHHHHHHHHHhhhcccCCCCccccccccccccchh
Confidence 55678899999775443 5565 9999999999999853 4679999988875544444
No 67
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=97.39 E-value=7.2e-05 Score=61.62 Aligned_cols=49 Identities=31% Similarity=0.727 Sum_probs=37.9
Q ss_pred CCcccccccccccccCCceeecCCCCCcccHhhHHHHHcCC-C------ccccccc
Q 038049 76 SASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSH-S------SCPTCRQ 124 (141)
Q Consensus 76 ~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~-~------~CP~CR~ 124 (141)
.+..+|.||.+.+...+.+---..|-|+||..||..|-++. + .||.|+.
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS 244 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence 44678999999998877653322399999999999998652 1 3999984
No 68
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=1.3e-05 Score=60.06 Aligned_cols=44 Identities=30% Similarity=0.658 Sum_probs=32.5
Q ss_pred CcccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCcccccccccc
Q 038049 77 ASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLK 127 (141)
Q Consensus 77 ~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~ 127 (141)
..+.|.||+++..+ ...+| |||.-+ |...- +...+||+||+++.
T Consensus 304 ~p~lcVVcl~e~~~---~~fvp-cGh~cc--ct~cs-~~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKS---AVFVP-CGHVCC--CTLCS-KHLPQCPVCRQRIR 347 (355)
T ss_pred CCCceEEecCCccc---eeeec-CCcEEE--chHHH-hhCCCCchhHHHHH
Confidence 34679999998666 47888 999965 65554 23455999999875
No 69
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.35 E-value=7.2e-05 Score=51.93 Aligned_cols=44 Identities=23% Similarity=0.500 Sum_probs=38.3
Q ss_pred cccccccccccCCceeecCCCCCcccHhhHHHHHcCCCcccccccccc
Q 038049 80 GCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLK 127 (141)
Q Consensus 80 ~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~ 127 (141)
.|.||-.+|..+ ..+. |||.||..|...-++....|-+|.+...
T Consensus 198 ~C~iCKkdy~sp---vvt~-CGH~FC~~Cai~~y~kg~~C~~Cgk~t~ 241 (259)
T COG5152 198 LCGICKKDYESP---VVTE-CGHSFCSLCAIRKYQKGDECGVCGKATY 241 (259)
T ss_pred eehhchhhccch---hhhh-cchhHHHHHHHHHhccCCcceecchhhc
Confidence 699999999877 5665 9999999999999999999999987543
No 70
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.30 E-value=0.0002 Score=51.29 Aligned_cols=55 Identities=16% Similarity=0.268 Sum_probs=47.7
Q ss_pred cccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccCCCCC
Q 038049 78 SAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKPSDAM 132 (141)
Q Consensus 78 ~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~~~~ 132 (141)
..-|++|.+.+.+...+..|..|||+|..+|++..+.....||+|-.++.+++.+
T Consensus 221 ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdiI 275 (303)
T KOG3039|consen 221 RYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDII 275 (303)
T ss_pred ceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccceE
Confidence 3459999999988877766666999999999999999999999999999877654
No 71
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=97.20 E-value=0.00026 Score=38.18 Aligned_cols=40 Identities=28% Similarity=0.865 Sum_probs=26.6
Q ss_pred ccccccccccCCceeecCCCC-----CcccHhhHHHHHc--CCCccccc
Q 038049 81 CAICLLDFIDGDEIRLLPKCN-----HRFHVACIDKWLL--SHSSCPTC 122 (141)
Q Consensus 81 C~ICl~~~~~~~~v~~lp~C~-----H~Fh~~Ci~~wl~--~~~~CP~C 122 (141)
|-||++.-.+++ .-+.| |+ ...|.+|+..|+. .+.+|++|
T Consensus 1 CrIC~~~~~~~~-~li~p-C~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISP-CRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-S-SS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecc-cccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 679998866655 33455 54 3689999999997 45679887
No 72
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=97.19 E-value=0.00015 Score=45.72 Aligned_cols=33 Identities=27% Similarity=0.706 Sum_probs=26.2
Q ss_pred CCcccccccccccccCCceeecCCCCCcccHhhHH
Q 038049 76 SASAGCAICLLDFIDGDEIRLLPKCNHRFHVACID 110 (141)
Q Consensus 76 ~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~ 110 (141)
+++..|++|-..+.. ......| |||+||..|+.
T Consensus 76 ~~~~~C~vC~k~l~~-~~f~~~p-~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGN-SVFVVFP-CGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCC-ceEEEeC-CCeEEeccccc
Confidence 334679999999877 4555677 99999999975
No 73
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.00015 Score=55.34 Aligned_cols=35 Identities=26% Similarity=0.785 Sum_probs=30.6
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHHHc
Q 038049 79 AGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLL 114 (141)
Q Consensus 79 ~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~ 114 (141)
-.|.||+++..-......+| |+|+||..|+..++.
T Consensus 185 f~C~ICf~e~~G~~c~~~lp-C~Hv~Ck~C~kdY~~ 219 (445)
T KOG1814|consen 185 FDCCICFEEQMGQHCFKFLP-CSHVFCKSCLKDYFT 219 (445)
T ss_pred ccceeeehhhcCcceeeecc-cchHHHHHHHHHHHH
Confidence 56999999976657778898 999999999999984
No 74
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.17 E-value=0.00029 Score=52.95 Aligned_cols=65 Identities=26% Similarity=0.553 Sum_probs=43.5
Q ss_pred HHHhhCCceeecCCCCCCCCCcccccccccccccCCceeecCCCCCcccHhhHHHH--HcCCCccccccccc
Q 038049 57 KEMVALPTVTYANSGSSPSSASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKW--LLSHSSCPTCRQRL 126 (141)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~w--l~~~~~CP~CR~~~ 126 (141)
+.+..-|..+.. +..+..++..-|.||-+.+.-. ..+| |+|..|--|--.- |-.++.||.||..-
T Consensus 41 NnlsaEPnltts-SaddtDEen~~C~ICA~~~TYs---~~~P-C~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 41 NNLSAEPNLTTS-SADDTDEENMNCQICAGSTTYS---ARYP-CGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred cccccCCccccc-cccccccccceeEEecCCceEE---Eecc-CCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 333334444333 3334445566799998776544 7888 9999998886543 45678999999854
No 75
>PHA03096 p28-like protein; Provisional
Probab=97.09 E-value=0.00025 Score=52.42 Aligned_cols=37 Identities=27% Similarity=0.627 Sum_probs=28.8
Q ss_pred ccccccccccccCC----ceeecCCCCCcccHhhHHHHHcC
Q 038049 79 AGCAICLLDFIDGD----EIRLLPKCNHRFHVACIDKWLLS 115 (141)
Q Consensus 79 ~~C~ICl~~~~~~~----~v~~lp~C~H~Fh~~Ci~~wl~~ 115 (141)
..|.|||+...... .=..++.|.|.|+..|+..|...
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~ 219 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTE 219 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHh
Confidence 67999998875432 12356789999999999999854
No 76
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=97.07 E-value=0.00034 Score=37.01 Aligned_cols=41 Identities=32% Similarity=0.752 Sum_probs=23.1
Q ss_pred ccccccccccCCceeecCCCCCcccHhhHHHHHcCCC--ccccc
Q 038049 81 CAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHS--SCPTC 122 (141)
Q Consensus 81 C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~--~CP~C 122 (141)
|.+|.+-...++..... .|+=.+|..|+..+++... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~-~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNR-DCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS---S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCC-ccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 56777666666444333 3888999999999998765 79987
No 77
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.00056 Score=51.56 Aligned_cols=49 Identities=27% Similarity=0.585 Sum_probs=41.5
Q ss_pred CCCcccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCcccccccccc
Q 038049 75 SSASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLK 127 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~ 127 (141)
..++..|+||.-. +......| |+|.=|++||.+.+.+.+.|=.|++.+.
T Consensus 419 ~sEd~lCpICyA~---pi~Avf~P-C~H~SC~~CI~qHlmN~k~CFfCktTv~ 467 (489)
T KOG4692|consen 419 DSEDNLCPICYAG---PINAVFAP-CSHRSCYGCITQHLMNCKRCFFCKTTVI 467 (489)
T ss_pred CcccccCcceecc---cchhhccC-CCCchHHHHHHHHHhcCCeeeEecceee
Confidence 4567889999744 44457888 9999999999999999999999998775
No 78
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.95 E-value=0.00039 Score=49.73 Aligned_cols=50 Identities=24% Similarity=0.527 Sum_probs=34.7
Q ss_pred cccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccCCCCCC
Q 038049 80 GCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKPSDAMP 133 (141)
Q Consensus 80 ~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~~~~~ 133 (141)
-|--|.-- ..++...++. |+|+||..|...= ....||+|++++.......
T Consensus 5 hCn~C~~~-~~~~~f~LTa-C~HvfC~~C~k~~--~~~~C~lCkk~ir~i~l~~ 54 (233)
T KOG4739|consen 5 HCNKCFRF-PSQDPFFLTA-CRHVFCEPCLKAS--SPDVCPLCKKSIRIIQLNR 54 (233)
T ss_pred Eecccccc-CCCCceeeee-chhhhhhhhcccC--Cccccccccceeeeeeccc
Confidence 36666533 3366677776 9999999997762 2338999999986554433
No 79
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.94 E-value=0.00022 Score=58.85 Aligned_cols=43 Identities=23% Similarity=0.621 Sum_probs=32.8
Q ss_pred cccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccc
Q 038049 78 SAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRL 126 (141)
Q Consensus 78 ~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~ 126 (141)
...|+.|-..++-+- |-. .|||.||.+|+. .+...||-|+..+
T Consensus 840 ~skCs~C~~~LdlP~-VhF--~CgHsyHqhC~e---~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 840 VSKCSACEGTLDLPF-VHF--LCGHSYHQHCLE---DKEDKCPKCLPEL 882 (933)
T ss_pred eeeecccCCccccce-eee--ecccHHHHHhhc---cCcccCCccchhh
Confidence 368999988876552 222 399999999999 4667899998743
No 80
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.00061 Score=46.63 Aligned_cols=32 Identities=28% Similarity=0.822 Sum_probs=25.9
Q ss_pred CCCCcccHhhHHHHHcCC----C-------ccccccccccCCC
Q 038049 99 KCNHRFHVACIDKWLLSH----S-------SCPTCRQRLKPSD 130 (141)
Q Consensus 99 ~C~H~Fh~~Ci~~wl~~~----~-------~CP~CR~~~~~~~ 130 (141)
+||.-||.-|+.+||+.- + .||+|-.++..+.
T Consensus 189 qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialKm 231 (234)
T KOG3268|consen 189 QCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALKM 231 (234)
T ss_pred ccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceeec
Confidence 499999999999999741 1 2999998887654
No 81
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.84 E-value=0.00059 Score=37.70 Aligned_cols=46 Identities=24% Similarity=0.510 Sum_probs=33.7
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccCCC
Q 038049 79 AGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKPSD 130 (141)
Q Consensus 79 ~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~~ 130 (141)
..|..|...- ..-.++| |||+.+..|...+ +-.-||.|.+++...+
T Consensus 8 ~~~~~~~~~~---~~~~~~p-CgH~I~~~~f~~~--rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 8 QPCVFCGFVG---TKGTVLP-CGHLICDNCFPGE--RYNGCPFCGTPFEFDD 53 (55)
T ss_pred eeEEEccccc---ccccccc-ccceeeccccChh--hccCCCCCCCcccCCC
Confidence 4566666442 2336787 9999999998875 6677999999886543
No 82
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.00031 Score=51.53 Aligned_cols=42 Identities=31% Similarity=0.676 Sum_probs=32.1
Q ss_pred cccccccccccccCCceeecCCCCCc-ccHhhHHHHHcCCCcccccccccc
Q 038049 78 SAGCAICLLDFIDGDEIRLLPKCNHR-FHVACIDKWLLSHSSCPTCRQRLK 127 (141)
Q Consensus 78 ~~~C~ICl~~~~~~~~v~~lp~C~H~-Fh~~Ci~~wl~~~~~CP~CR~~~~ 127 (141)
...|.|||+. +.....|+ |||. -|.+|-..- ..||+||+-+.
T Consensus 300 ~~LC~ICmDa---P~DCvfLe-CGHmVtCt~CGkrm----~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDA---PRDCVFLE-CGHMVTCTKCGKRM----NECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcC---CcceEEee-cCcEEeehhhcccc----ccCchHHHHHH
Confidence 5779999977 44557888 9997 788885442 48999998553
No 83
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.00056 Score=50.27 Aligned_cols=45 Identities=27% Similarity=0.460 Sum_probs=38.5
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCcccccccccc
Q 038049 79 AGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLK 127 (141)
Q Consensus 79 ~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~ 127 (141)
..|-||...|..+ .++. |+|.||..|-..-+++...|++|-+...
T Consensus 242 f~c~icr~~f~~p---Vvt~-c~h~fc~~ca~~~~qk~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 242 FKCFICRKYFYRP---VVTK-CGHYFCEVCALKPYQKGEKCYVCSQQTH 286 (313)
T ss_pred ccccccccccccc---hhhc-CCceeehhhhccccccCCcceecccccc
Confidence 3499999999887 5665 9999999999998888899999987654
No 84
>PF04641 Rtf2: Rtf2 RING-finger
Probab=96.68 E-value=0.002 Score=47.22 Aligned_cols=54 Identities=20% Similarity=0.445 Sum_probs=42.0
Q ss_pred CCCcccccccccccccCCce-eecCCCCCcccHhhHHHHHcCCCccccccccccCCC
Q 038049 75 SSASAGCAICLLDFIDGDEI-RLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKPSD 130 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v-~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~~ 130 (141)
....-.|||...+|...... .+-| |||+|-..++.+- .....||+|-.++...+
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~-cG~V~s~~alke~-k~~~~Cp~c~~~f~~~D 164 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRP-CGCVFSEKALKEL-KKSKKCPVCGKPFTEED 164 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcC-CCCEeeHHHHHhh-cccccccccCCccccCC
Confidence 45566799999999655444 4455 9999999999997 33567999999988664
No 85
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.00011 Score=55.74 Aligned_cols=51 Identities=27% Similarity=0.671 Sum_probs=44.2
Q ss_pred cccccccccccccC-CceeecCCCCCcccHhhHHHHHcCCCccccccccccCC
Q 038049 78 SAGCAICLLDFIDG-DEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKPS 129 (141)
Q Consensus 78 ~~~C~ICl~~~~~~-~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~ 129 (141)
...|+||.+.++.. +++..+- |||.+|.+|+..|+.+...||.||+.+...
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~-~g~~~~~~kL~k~L~~~~kl~~~~rel~~~ 247 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIV-CGHIYHHGKLSKWLATKRKLPSCRRELPKN 247 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHh-hcccchhhHHHHHHHHHHHhHHHHhhhhhh
Confidence 45799999999877 6777775 999999999999999989999999988643
No 86
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.52 E-value=0.0024 Score=47.19 Aligned_cols=53 Identities=28% Similarity=0.587 Sum_probs=39.2
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHHHc-CCCccccccc-cccCCCCCCC
Q 038049 79 AGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLL-SHSSCPTCRQ-RLKPSDAMPS 134 (141)
Q Consensus 79 ~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~-~~~~CP~CR~-~~~~~~~~~~ 134 (141)
..|+.|..-+..+ ..+|.|+|.|+.+||..-|. ....||+|.+ ++......|+
T Consensus 275 LkCplc~~Llrnp---~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD 329 (427)
T COG5222 275 LKCPLCHCLLRNP---MKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPD 329 (427)
T ss_pred ccCcchhhhhhCc---ccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCcc
Confidence 6799998776555 45567999999999998775 5678999965 4444444444
No 87
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.50 E-value=0.0015 Score=54.45 Aligned_cols=37 Identities=24% Similarity=0.618 Sum_probs=28.0
Q ss_pred CCcccccccccccccCCceeecCCCCCcccHhhHHHHHc
Q 038049 76 SASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLL 114 (141)
Q Consensus 76 ~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~ 114 (141)
+.+.+|.+|.-.+... .-.+.| |||.||++|+..-..
T Consensus 815 ep~d~C~~C~~~ll~~-pF~vf~-CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIK-PFYVFP-CGHCFHRDCLIRHVL 851 (911)
T ss_pred cCccchHHhcchhhcC-cceeee-ccchHHHHHHHHHHH
Confidence 3457899998777554 334666 999999999997763
No 88
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.48 E-value=0.0021 Score=48.29 Aligned_cols=56 Identities=16% Similarity=0.422 Sum_probs=37.3
Q ss_pred CCCcccccccccccccCCceeecCCCCCcccHhhHHHHHcC-CCccccccccccCCC
Q 038049 75 SSASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLS-HSSCPTCRQRLKPSD 130 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~-~~~CP~CR~~~~~~~ 130 (141)
+++++-|+.|+++++..|+=..--+||-..|.-|...--+. +..||-||+-..++.
T Consensus 11 edeed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den 67 (480)
T COG5175 11 EDEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN 67 (480)
T ss_pred ccccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence 34445699999999877654332249977777775443222 567999999776543
No 89
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=96.36 E-value=0.0053 Score=33.88 Aligned_cols=35 Identities=34% Similarity=0.852 Sum_probs=30.0
Q ss_pred CcccccccccccccCCceeecCCCCCcccHhhHHH
Q 038049 77 ASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDK 111 (141)
Q Consensus 77 ~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~ 111 (141)
....|.+|-+.|.+++.+.+-|.||-.+|++|-+.
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 34679999999998888888888999999999543
No 90
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.27 E-value=0.0024 Score=52.55 Aligned_cols=22 Identities=32% Similarity=0.972 Sum_probs=20.9
Q ss_pred CCCcccHhhHHHHHcCCCcccc
Q 038049 100 CNHRFHVACIDKWLLSHSSCPT 121 (141)
Q Consensus 100 C~H~Fh~~Ci~~wl~~~~~CP~ 121 (141)
|+|+-|.+|..+|++.+..||.
T Consensus 1048 C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1048 CGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred ccccccHHHHHHHHhcCCcCCC
Confidence 9999999999999999999984
No 91
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=96.08 E-value=0.0015 Score=53.75 Aligned_cols=47 Identities=34% Similarity=0.711 Sum_probs=37.2
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHHHcC--CCccccccccccCCC
Q 038049 79 AGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLS--HSSCPTCRQRLKPSD 130 (141)
Q Consensus 79 ~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~--~~~CP~CR~~~~~~~ 130 (141)
..|.||++ .+....++ |+|.|+.+|+..-+.. ...||.||..+..+.
T Consensus 455 ~~c~ic~~----~~~~~it~-c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~ 503 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITR-CGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK 503 (674)
T ss_pred cccccccc----cccceeec-ccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence 68999998 44456666 9999999999998864 346999999776543
No 92
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=95.96 E-value=0.0064 Score=46.43 Aligned_cols=30 Identities=33% Similarity=0.928 Sum_probs=22.3
Q ss_pred CCCcccHhhHHHHHcCCC-------------ccccccccccCC
Q 038049 100 CNHRFHVACIDKWLLSHS-------------SCPTCRQRLKPS 129 (141)
Q Consensus 100 C~H~Fh~~Ci~~wl~~~~-------------~CP~CR~~~~~~ 129 (141)
|.-.+|.+|+-.|+-.++ .||.||+.++-.
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCil 353 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCIL 353 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceee
Confidence 445678999999985432 499999987644
No 93
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=95.90 E-value=0.005 Score=45.32 Aligned_cols=43 Identities=28% Similarity=0.698 Sum_probs=37.3
Q ss_pred ccccccccccCCc-eeecCCCCCcccHhhHHHHHcCCCccccccc
Q 038049 81 CAICLLDFIDGDE-IRLLPKCNHRFHVACIDKWLLSHSSCPTCRQ 124 (141)
Q Consensus 81 C~ICl~~~~~~~~-v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~ 124 (141)
|+||.+.+..... +..++ |||.-|..|+++....+.+||+|.+
T Consensus 161 cPic~e~l~~s~~~~~~~~-CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 161 CPICKEYLFLSFEDAGVLK-CGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred CchhHHHhccccccCCccC-cccchHHHHHHHHhccCCCCCcccc
Confidence 9999998876654 45676 9999999999999988899999988
No 94
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=0.0065 Score=45.20 Aligned_cols=47 Identities=34% Similarity=0.699 Sum_probs=37.9
Q ss_pred ccccccccccccCCc---eeecCCCCCcccHhhHHHHHcCC-Cccccccccc
Q 038049 79 AGCAICLLDFIDGDE---IRLLPKCNHRFHVACIDKWLLSH-SSCPTCRQRL 126 (141)
Q Consensus 79 ~~C~ICl~~~~~~~~---v~~lp~C~H~Fh~~Ci~~wl~~~-~~CP~CR~~~ 126 (141)
.+|-||-++|...+. .+.+. |||.|+..|+..-+... ..||.||.+.
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~-c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLK-CGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccc-cCceehHhHHHHHhcCceeeccCCCCcc
Confidence 579999999987643 35565 99999999999887653 5699999985
No 95
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=95.83 E-value=0.0082 Score=40.43 Aligned_cols=33 Identities=27% Similarity=0.621 Sum_probs=21.4
Q ss_pred cccccccccccccCCceeecC-----------CCC-CcccHhhHHHHH
Q 038049 78 SAGCAICLLDFIDGDEIRLLP-----------KCN-HRFHVACIDKWL 113 (141)
Q Consensus 78 ~~~C~ICl~~~~~~~~v~~lp-----------~C~-H~Fh~~Ci~~wl 113 (141)
+..|+||||---+. .+|- -|+ -.-|..|++++-
T Consensus 2 d~~CpICme~PHNA---VLLlCSS~~kgcRpymc~Ts~rhSNCLdqfk 46 (162)
T PF07800_consen 2 DVTCPICMEHPHNA---VLLLCSSHEKGCRPYMCDTSYRHSNCLDQFK 46 (162)
T ss_pred CccCceeccCCCce---EEEEeccccCCccccccCCccchhHHHHHHH
Confidence 57899999874332 2221 144 346899999875
No 96
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=0.064 Score=41.22 Aligned_cols=46 Identities=20% Similarity=0.358 Sum_probs=37.6
Q ss_pred cccccccccccccCCceeecCCCCCcccHhhHHHHHcCCC---ccccccc
Q 038049 78 SAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHS---SCPTCRQ 124 (141)
Q Consensus 78 ~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~---~CP~CR~ 124 (141)
.-.|||=-++-.+......+. |||+...+-+..-.++.. .||+|=.
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~-CGHVISkdAlnrLS~ng~~sfKCPYCP~ 382 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLI-CGHVISKDALNRLSKNGSQSFKCPYCPV 382 (394)
T ss_pred eeecccchhhccCCCCCeeee-ccceecHHHHHHHhhCCCeeeeCCCCCc
Confidence 356999888877777778887 999999999999877654 4999943
No 97
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=94.72 E-value=0.015 Score=31.11 Aligned_cols=30 Identities=27% Similarity=0.722 Sum_probs=22.0
Q ss_pred CC-CcccHhhHHHHHcCCCccccccccccCC
Q 038049 100 CN-HRFHVACIDKWLLSHSSCPTCRQRLKPS 129 (141)
Q Consensus 100 C~-H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~ 129 (141)
|+ |..+-.|+..-+.+...||+|..+++.+
T Consensus 18 C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 18 CSDHYLCLNCLTLMLSRSDRCPICGKPLPTK 48 (50)
T ss_dssp -SS-EEEHHHHHHT-SSSSEETTTTEE----
T ss_pred ecchhHHHHHHHHHhccccCCCcccCcCccc
Confidence 76 9999999999999999999999988754
No 98
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=94.71 E-value=0.021 Score=42.73 Aligned_cols=47 Identities=23% Similarity=0.444 Sum_probs=35.9
Q ss_pred CCCcccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCcccccccccc
Q 038049 75 SSASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLK 127 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~ 127 (141)
..+-.+|+||.+.+..+ +.+-+ =||+.|..|=.+ ....||.||.++.
T Consensus 45 ~~~lleCPvC~~~l~~P--i~QC~-nGHlaCssC~~~---~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPP--IFQCD-NGHLACSSCRTK---VSNKCPTCRLPIG 91 (299)
T ss_pred chhhccCchhhccCccc--ceecC-CCcEehhhhhhh---hcccCCccccccc
Confidence 44557899999999877 23322 479999999663 4677999999987
No 99
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=94.62 E-value=0.013 Score=43.54 Aligned_cols=44 Identities=30% Similarity=0.665 Sum_probs=29.7
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCcccccccccc
Q 038049 79 AGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLK 127 (141)
Q Consensus 79 ~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~ 127 (141)
..|--|--.+. -.-|+.| |.|+||.+|-.. ...+.||.|-..+.
T Consensus 91 HfCd~Cd~PI~--IYGRmIP-CkHvFCl~CAr~--~~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 91 HFCDRCDFPIA--IYGRMIP-CKHVFCLECARS--DSDKICPLCDDRVQ 134 (389)
T ss_pred EeecccCCcce--eeecccc-cchhhhhhhhhc--CccccCcCcccHHH
Confidence 34666643321 1126788 999999999765 34678999977653
No 100
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.57 E-value=0.016 Score=41.07 Aligned_cols=40 Identities=30% Similarity=0.661 Sum_probs=30.4
Q ss_pred ccccccccccCCceeecCCCCCc-ccHhhHHHHHcCCCccccccccccC
Q 038049 81 CAICLLDFIDGDEIRLLPKCNHR-FHVACIDKWLLSHSSCPTCRQRLKP 128 (141)
Q Consensus 81 C~ICl~~~~~~~~v~~lp~C~H~-Fh~~Ci~~wl~~~~~CP~CR~~~~~ 128 (141)
|-.|-+. +..|-.+| |.|. +|..|=.. -..||+|+.....
T Consensus 161 Cr~C~~~---~~~VlllP-CrHl~lC~~C~~~----~~~CPiC~~~~~s 201 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLP-CRHLCLCGICDES----LRICPICRSPKTS 201 (207)
T ss_pred ceecCcC---CceEEeec-ccceEeccccccc----CccCCCCcChhhc
Confidence 7788744 66788999 9987 89999543 4669999886543
No 101
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=94.55 E-value=0.035 Score=46.37 Aligned_cols=55 Identities=25% Similarity=0.636 Sum_probs=40.4
Q ss_pred CCCCCCcccccccccccccCCceeecC-CCC---CcccHhhHHHHHcC--CCcccccccccc
Q 038049 72 SSPSSASAGCAICLLDFIDGDEIRLLP-KCN---HRFHVACIDKWLLS--HSSCPTCRQRLK 127 (141)
Q Consensus 72 ~~~~~~~~~C~ICl~~~~~~~~v~~lp-~C~---H~Fh~~Ci~~wl~~--~~~CP~CR~~~~ 127 (141)
...++++..|-||..+=.+++.+- -| +|. ...|.+|+.+|+.- ...|-+|+.++.
T Consensus 6 ~~mN~d~~~CRICr~e~~~d~pLf-hPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~ 66 (1175)
T COG5183 6 TPMNEDKRSCRICRTEDIRDDPLF-HPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYK 66 (1175)
T ss_pred CCCCccchhceeecCCCCCCCcCc-ccccccchhHHHHHHHHHHHHhcCCCcceeeecceee
Confidence 345667789999998865555553 34 343 44899999999975 355999999885
No 102
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.49 E-value=0.017 Score=44.76 Aligned_cols=39 Identities=28% Similarity=0.717 Sum_probs=28.5
Q ss_pred CcccccccccccccC-CceeecCCCCCcccHhhHHHHHcCC
Q 038049 77 ASAGCAICLLDFIDG-DEIRLLPKCNHRFHVACIDKWLLSH 116 (141)
Q Consensus 77 ~~~~C~ICl~~~~~~-~~v~~lp~C~H~Fh~~Ci~~wl~~~ 116 (141)
...+|.||+.+...+ +.-... .|+|.|+.+|+...+..+
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~-~C~H~fC~~C~k~~iev~ 184 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVL-KCGHRFCKDCVKQHIEVK 184 (384)
T ss_pred ccccCccCccccccHhhhHHHh-cccchhhhHHhHHHhhhh
Confidence 457899999555444 333434 599999999999998743
No 103
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=94.47 E-value=0.013 Score=50.98 Aligned_cols=45 Identities=31% Similarity=0.684 Sum_probs=37.1
Q ss_pred cccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCcccccccc
Q 038049 78 SAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQR 125 (141)
Q Consensus 78 ~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~ 125 (141)
...|.||++.+.....+. .|||.++..|...|+..+..||.|...
T Consensus 1153 ~~~c~ic~dil~~~~~I~---~cgh~~c~~c~~~~l~~~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1153 HFVCEICLDILRNQGGIA---GCGHEPCCRCDELWLYASSRCPICKSI 1197 (1394)
T ss_pred ccchHHHHHHHHhcCCee---eechhHhhhHHHHHHHHhccCcchhhh
Confidence 347999999987543333 399999999999999999999999743
No 104
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=93.55 E-value=0.049 Score=40.65 Aligned_cols=49 Identities=22% Similarity=0.673 Sum_probs=35.7
Q ss_pred cccccccccccccCCc-eeecCCCC-----CcccHhhHHHHHc--CCCcccccccccc
Q 038049 78 SAGCAICLLDFIDGDE-IRLLPKCN-----HRFHVACIDKWLL--SHSSCPTCRQRLK 127 (141)
Q Consensus 78 ~~~C~ICl~~~~~~~~-v~~lp~C~-----H~Fh~~Ci~~wl~--~~~~CP~CR~~~~ 127 (141)
+..|-||.++...... ....| |. +..|..|++.|+. .+..|.+|.....
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~p-C~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~ 134 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISP-CSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFI 134 (323)
T ss_pred CCcEEEEecccccccccccccC-ccccCcHHHHHHHHHHhhhccccCeeeecccccce
Confidence 5789999987654432 34555 54 6689999999997 4567999987554
No 105
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=93.54 E-value=0.07 Score=39.41 Aligned_cols=51 Identities=25% Similarity=0.718 Sum_probs=35.6
Q ss_pred cccccccc-cccCCceeecCCCCCcccHhhHHHHHcC-CCccccccccccCCC
Q 038049 80 GCAICLLD-FIDGDEIRLLPKCNHRFHVACIDKWLLS-HSSCPTCRQRLKPSD 130 (141)
Q Consensus 80 ~C~ICl~~-~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~-~~~CP~CR~~~~~~~ 130 (141)
.|++|-.. |-.++...+...|+|..|..|++.-+.. ...||.|-..+....
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~n 54 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNN 54 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhcc
Confidence 48888754 3344433333249999999999998765 467999987765443
No 106
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=93.38 E-value=0.023 Score=40.88 Aligned_cols=51 Identities=29% Similarity=0.740 Sum_probs=37.5
Q ss_pred Ccccccccccccc-cCC-ceeecCCCCCcccHhhHHHHHcCC-Cccc--ccccccc
Q 038049 77 ASAGCAICLLDFI-DGD-EIRLLPKCNHRFHVACIDKWLLSH-SSCP--TCRQRLK 127 (141)
Q Consensus 77 ~~~~C~ICl~~~~-~~~-~v~~lp~C~H~Fh~~Ci~~wl~~~-~~CP--~CR~~~~ 127 (141)
.+..||+|..+-. .++ .+-+-|.|-|..|..|++.-+... ..|| .|.+-+.
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILR 64 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILR 64 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHH
Confidence 3467999996643 333 344566799999999999998765 5699 8876554
No 107
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.34 E-value=0.056 Score=39.27 Aligned_cols=55 Identities=24% Similarity=0.567 Sum_probs=36.5
Q ss_pred CCCcccccccccccccCCce-eecCCCC-----CcccHhhHHHHHcCCC--------ccccccccccCCC
Q 038049 75 SSASAGCAICLLDFIDGDEI-RLLPKCN-----HRFHVACIDKWLLSHS--------SCPTCRQRLKPSD 130 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v-~~lp~C~-----H~Fh~~Ci~~wl~~~~--------~CP~CR~~~~~~~ 130 (141)
.+.+..|=||+..=+++..- -+-| |. |=-|..|+..|+-.+. +||.|+++....-
T Consensus 17 ~e~eR~CWiCF~TdeDn~~a~WV~P-CrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv~ 85 (293)
T KOG3053|consen 17 QELERCCWICFATDEDNRLAAWVHP-CRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIVF 85 (293)
T ss_pred cccceeEEEEeccCcccchhhhccc-ccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheeec
Confidence 34557799999764443221 2334 43 7799999999995322 3999999875443
No 108
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.30 E-value=0.12 Score=33.07 Aligned_cols=62 Identities=21% Similarity=0.282 Sum_probs=39.7
Q ss_pred CCceeecCCCCCCCCCcccccccccccccCC----------ceeecCCCCCcccHhhHHHHHcCCCcccccc
Q 038049 62 LPTVTYANSGSSPSSASAGCAICLLDFIDGD----------EIRLLPKCNHRFHVACIDKWLLSHSSCPTCR 123 (141)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~----------~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR 123 (141)
+|...+.+...+.......|--|+..|.+.. ....-+.|++.|+.+|=.-+-+.-.+||.|-
T Consensus 39 fPl~~f~ev~~~~~~~~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 39 FPLKAFQEIPLEEYNGSRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CCCcccccccccccCCCCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 4444444332222333456999999886431 1233456999999999777766677899995
No 109
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=92.69 E-value=0.097 Score=34.32 Aligned_cols=53 Identities=21% Similarity=0.383 Sum_probs=37.7
Q ss_pred cccccccccccccCCceeecCCCCCcccHhhHHHHHcC---CCccccccccccCCC
Q 038049 78 SAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLS---HSSCPTCRQRLKPSD 130 (141)
Q Consensus 78 ~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~---~~~CP~CR~~~~~~~ 130 (141)
-.+|-||.|.-.+..-+.--.-||-..|.-|...-++. ...||+|+.++....
T Consensus 80 lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 80 LYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred ceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 37899999886555322222249999999988776653 577999999986543
No 110
>PF15050 SCIMP: SCIMP protein
Probab=92.37 E-value=0.47 Score=30.52 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=13.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Q 038049 5 NIMVIVAAMLCALVCALGLHSML 27 (141)
Q Consensus 5 ~~~~i~~~~l~~~~~~l~~~~~~ 27 (141)
++|+++++.++++-+.+|++++.
T Consensus 7 nFWiiLAVaII~vS~~lglIlyC 29 (133)
T PF15050_consen 7 NFWIILAVAIILVSVVLGLILYC 29 (133)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH
Confidence 57777777755555555544443
No 111
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.67 E-value=0.065 Score=43.75 Aligned_cols=40 Identities=28% Similarity=0.536 Sum_probs=31.8
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccc
Q 038049 79 AGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCP 120 (141)
Q Consensus 79 ~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP 120 (141)
..|.||+..|......-+.++|||..|..|++.- .+.+||
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~l--yn~scp 51 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLL--YNASCP 51 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHhH--hhccCC
Confidence 4699999999877655555579999999999986 356788
No 112
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.46 E-value=0.079 Score=39.29 Aligned_cols=30 Identities=23% Similarity=0.732 Sum_probs=23.3
Q ss_pred CCCcccHhhHHHHHcC-------------CCccccccccccCC
Q 038049 100 CNHRFHVACIDKWLLS-------------HSSCPTCRQRLKPS 129 (141)
Q Consensus 100 C~H~Fh~~Ci~~wl~~-------------~~~CP~CR~~~~~~ 129 (141)
|.-.+|.+|+..|+.. +-+||.||+.++..
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~ 367 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIR 367 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEe
Confidence 6678899999988743 34599999987644
No 113
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=91.34 E-value=0.46 Score=30.89 Aligned_cols=7 Identities=0% Similarity=0.373 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 038049 26 MLQCVFQ 32 (141)
Q Consensus 26 ~~~~~~~ 32 (141)
++.|+++
T Consensus 83 li~y~ir 89 (122)
T PF01102_consen 83 LISYCIR 89 (122)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 114
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=91.12 E-value=0.17 Score=27.68 Aligned_cols=42 Identities=33% Similarity=0.800 Sum_probs=21.2
Q ss_pred ccccccccccCC------ceeecCCCCCcccHhhHHHHH-cCCCcccccc
Q 038049 81 CAICLLDFIDGD------EIRLLPKCNHRFHVACIDKWL-LSHSSCPTCR 123 (141)
Q Consensus 81 C~ICl~~~~~~~------~v~~lp~C~H~Fh~~Ci~~wl-~~~~~CP~CR 123 (141)
|--|+.+|.... ....-|.|++.|+.+| +.++ ++-.+||.|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dC-D~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDC-DVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHH-HHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCc-ChhhhccccCCcCCC
Confidence 455666665542 3455667999999999 3333 2346799883
No 115
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.72 E-value=0.25 Score=35.95 Aligned_cols=50 Identities=18% Similarity=0.309 Sum_probs=37.4
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccCCC
Q 038049 79 AGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKPSD 130 (141)
Q Consensus 79 ~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~~ 130 (141)
-.|+|=--+|.....-..+..|||+|-..-+.+- ...+|++|.+.+.+.+
T Consensus 112 fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~~d 161 (293)
T KOG3113|consen 112 FICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQEDD 161 (293)
T ss_pred eecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCcccccC
Confidence 4588877777554433333359999999999884 5788999999887665
No 116
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=90.38 E-value=0.23 Score=37.38 Aligned_cols=62 Identities=19% Similarity=0.405 Sum_probs=42.8
Q ss_pred CCceeecCCCCCCCCCcccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccc
Q 038049 62 LPTVTYANSGSSPSSASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQ 124 (141)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~ 124 (141)
+|...+.+.......++..|-.|.++.......+.-. |.|.||.+|=.--=++-..||.|..
T Consensus 314 ~PL~~F~Eip~~~~~~~~~Cf~C~~~~~~~~~y~C~~-Ck~~FCldCDv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 314 FPLKPFVEIPETEYNGSRFCFACQGELLSSGRYRCES-CKNVFCLDCDVFIHESLHNCPGCEH 375 (378)
T ss_pred cCCcchhhccccccCCCcceeeeccccCCCCcEEchh-ccceeeccchHHHHhhhhcCCCcCC
Confidence 5666666555555555677999987776665555554 9999999995543344567999963
No 117
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=90.11 E-value=0.19 Score=39.39 Aligned_cols=35 Identities=26% Similarity=0.617 Sum_probs=29.3
Q ss_pred CcccccccccccccCCceeecCCCCCcccHhhHHHHHcC
Q 038049 77 ASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLS 115 (141)
Q Consensus 77 ~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~ 115 (141)
++..|+||..-|.++ +++| |+|..|.-|-..-+.+
T Consensus 3 eelkc~vc~~f~~ep---iil~-c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 3 EELKCPVCGSFYREP---IILP-CSHNLCQACARNILVQ 37 (699)
T ss_pred ccccCceehhhccCc---eEee-cccHHHHHHHHhhccc
Confidence 346799999998887 7888 9999999998876544
No 118
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=89.35 E-value=0.21 Score=23.32 Aligned_cols=23 Identities=22% Similarity=0.638 Sum_probs=12.4
Q ss_pred cccccccccccCCceeecCCCCCcc
Q 038049 80 GCAICLLDFIDGDEIRLLPKCNHRF 104 (141)
Q Consensus 80 ~C~ICl~~~~~~~~v~~lp~C~H~F 104 (141)
+|+-|-.++. ...+.-|.|||.|
T Consensus 2 ~CP~C~~~V~--~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVP--ESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCch--hhcCcCCCCCCCC
Confidence 3666665542 2234445577766
No 119
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.98 E-value=0.21 Score=40.49 Aligned_cols=47 Identities=36% Similarity=0.950 Sum_probs=38.5
Q ss_pred CCcccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccCCC
Q 038049 76 SASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKPSD 130 (141)
Q Consensus 76 ~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~~ 130 (141)
.....|.+|+.+. ..+.++ |. |..|+..|+-.+..||+|+..+...+
T Consensus 477 ~~~~~~~~~~~~~----~~~~~~-~~---~~~~l~~~~~~~~~~pl~~~~~~~~~ 523 (543)
T KOG0802|consen 477 EPNDVCAICYQEM----SARITP-CS---HALCLRKWLYVQEVCPLCHTYMKEDD 523 (543)
T ss_pred cccCcchHHHHHH----Hhcccc-cc---chhHHHhhhhhccccCCCchhhhccc
Confidence 3456799999887 446676 88 99999999999999999999876554
No 120
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=88.92 E-value=0.26 Score=34.81 Aligned_cols=40 Identities=40% Similarity=0.828 Sum_probs=27.5
Q ss_pred ccccccccc-----cccCCceeecCCCCCcccHhhHHHHHcCCCccccccc
Q 038049 79 AGCAICLLD-----FIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQ 124 (141)
Q Consensus 79 ~~C~ICl~~-----~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~ 124 (141)
-.|-+|-++ |+. +.+..-+.|+.+||..|.. +..||-|-+
T Consensus 153 fiCe~C~~~~~IfPF~~-~~~~~C~~C~~v~H~~C~~-----~~~CpkC~R 197 (202)
T PF13901_consen 153 FICEICNSDDIIFPFQI-DTTVRCPKCKSVFHKSCFR-----KKSCPKCAR 197 (202)
T ss_pred CCCccCCCCCCCCCCCC-CCeeeCCcCccccchhhcC-----CCCCCCcHh
Confidence 457777642 222 3455556799999999976 277999954
No 121
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.42 E-value=0.29 Score=38.71 Aligned_cols=38 Identities=29% Similarity=0.587 Sum_probs=30.5
Q ss_pred CCCcccccccccccccCCceeecCCCCCcccHhhHHHHHcC
Q 038049 75 SSASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLS 115 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~ 115 (141)
.....+|-||.+.+.. .+..+. |||.|+..|...++.+
T Consensus 67 ~~~~~~c~ic~~~~~~--~~~~~~-c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 67 KKGDVQCGICVESYDG--EIIGLG-CGHPFCPPCWTGYLGT 104 (444)
T ss_pred CCccccCCcccCCCcc--hhhhcC-CCcHHHHHHHHHHhhh
Confidence 4556889999999765 444555 9999999999999965
No 122
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=88.23 E-value=0.15 Score=41.46 Aligned_cols=26 Identities=31% Similarity=0.861 Sum_probs=19.2
Q ss_pred eecCCCCCcccHhhHHHHHcCCCccccccc
Q 038049 95 RLLPKCNHRFHVACIDKWLLSHSSCPTCRQ 124 (141)
Q Consensus 95 ~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~ 124 (141)
+.. .|+++||..|+.. .+..||-|-+
T Consensus 533 rC~-~C~avfH~~C~~r---~s~~CPrC~R 558 (580)
T KOG1829|consen 533 RCS-TCLAVFHKKCLRR---KSPCCPRCER 558 (580)
T ss_pred eHH-HHHHHHHHHHHhc---cCCCCCchHH
Confidence 344 4999999999665 4455999954
No 123
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=87.96 E-value=0.56 Score=23.13 Aligned_cols=37 Identities=24% Similarity=0.510 Sum_probs=24.4
Q ss_pred ccccccccccCCceeecCCCCCcccHhhHHHHHcCCCcccccccccc
Q 038049 81 CAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLK 127 (141)
Q Consensus 81 C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~ 127 (141)
|..|-..+.+.+..... =+..||.+| ..|..|+.++.
T Consensus 2 C~~C~~~i~~~~~~~~~--~~~~~H~~C--------f~C~~C~~~L~ 38 (39)
T smart00132 2 CAGCGKPIRGGELVLRA--LGKVWHPEC--------FKCSKCGKPLG 38 (39)
T ss_pred ccccCCcccCCcEEEEe--CCccccccC--------CCCcccCCcCc
Confidence 77888777665333222 467899988 56777776653
No 124
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=87.88 E-value=0.14 Score=42.16 Aligned_cols=45 Identities=31% Similarity=0.739 Sum_probs=36.0
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHHHcC---CCcccccccccc
Q 038049 79 AGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLS---HSSCPTCRQRLK 127 (141)
Q Consensus 79 ~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~---~~~CP~CR~~~~ 127 (141)
.+|+||+..+.++ ..+. |.|.|+..|+..-+.. ...||+|+..+.
T Consensus 22 lEc~ic~~~~~~p---~~~k-c~~~~l~~~~n~~f~~~~~~~~~~lc~~~~e 69 (684)
T KOG4362|consen 22 LECPICLEHVKEP---SLLK-CDHIFLKFCLNKLFESKKGPKQCALCKSDIE 69 (684)
T ss_pred ccCCceeEEeecc---chhh-hhHHHHhhhhhceeeccCccccchhhhhhhh
Confidence 6799999999887 4454 9999999998876654 356999997665
No 125
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.80 E-value=0.18 Score=42.05 Aligned_cols=43 Identities=21% Similarity=0.546 Sum_probs=31.3
Q ss_pred cccccccccccccC----CceeecCCCCCcccHhhHHHHHcCCCccccc
Q 038049 78 SAGCAICLLDFIDG----DEIRLLPKCNHRFHVACIDKWLLSHSSCPTC 122 (141)
Q Consensus 78 ~~~C~ICl~~~~~~----~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~C 122 (141)
+..|+-|.+..... +.+...- |||+||..|+..-..+++ |-.|
T Consensus 784 e~rc~~c~~~~l~~~~~~~~~~v~~-c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 784 EERCSSCFEPNLPSGAAFDSVVVFH-CGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred hhhhhhhcccccccCcccceeeEEE-ccchhhhcccccHHHhcc-cChh
Confidence 35799999887533 3456665 999999999998876655 4444
No 126
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=87.77 E-value=0.33 Score=35.60 Aligned_cols=48 Identities=29% Similarity=0.734 Sum_probs=34.9
Q ss_pred ccccccccccccCCceeec---CCCCCcccHhhHHHHHcC---------CCccccccccc
Q 038049 79 AGCAICLLDFIDGDEIRLL---PKCNHRFHVACIDKWLLS---------HSSCPTCRQRL 126 (141)
Q Consensus 79 ~~C~ICl~~~~~~~~v~~l---p~C~H~Fh~~Ci~~wl~~---------~~~CP~CR~~~ 126 (141)
.+|.+|..++.+.+..+.+ |.|+-++|..|+.+.+.. +..||.|++.+
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 5899999999655544332 258999999999995432 23499999854
No 127
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=87.70 E-value=0.4 Score=39.96 Aligned_cols=42 Identities=26% Similarity=0.554 Sum_probs=30.2
Q ss_pred cccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCcccc
Q 038049 78 SAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPT 121 (141)
Q Consensus 78 ~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~ 121 (141)
...|.+|-..+.. .. ...+.|||.=|.+|+..|+...+.||.
T Consensus 779 ~~~CtVC~~vi~G-~~-~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 779 SAKCTVCDLVIRG-VD-VWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred hcCceeecceeee-eE-eecccccccccHHHHHHHHhcCCCCcc
Confidence 3468888655422 11 223369999999999999998888766
No 128
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=87.54 E-value=0.33 Score=34.40 Aligned_cols=45 Identities=33% Similarity=0.792 Sum_probs=34.7
Q ss_pred CcccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccc
Q 038049 77 ASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQ 124 (141)
Q Consensus 77 ~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~ 124 (141)
+-..|.+|..-.-.+ ++.-. ||=.+|..|+..++.+...||.|..
T Consensus 180 nlk~Cn~Ch~LvIqg--~rCg~-c~i~~h~~c~qty~q~~~~cphc~d 224 (235)
T KOG4718|consen 180 NLKNCNLCHCLVIQG--IRCGS-CNIQYHRGCIQTYLQRRDICPHCGD 224 (235)
T ss_pred HHHHHhHhHHHhhee--eccCc-ccchhhhHHHHHHhcccCcCCchhc
Confidence 346799998665443 34343 8888999999999999999999954
No 129
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=87.08 E-value=0.57 Score=25.63 Aligned_cols=40 Identities=23% Similarity=0.487 Sum_probs=27.8
Q ss_pred ccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccCCC
Q 038049 81 CAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKPSD 130 (141)
Q Consensus 81 C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~~ 130 (141)
|+-|-..+.+.+.+... -|..||.+| -.|-.|++++....
T Consensus 1 C~~C~~~I~~~~~~~~~--~~~~~H~~C--------f~C~~C~~~l~~~~ 40 (58)
T PF00412_consen 1 CARCGKPIYGTEIVIKA--MGKFWHPEC--------FKCSKCGKPLNDGD 40 (58)
T ss_dssp BTTTSSBESSSSEEEEE--TTEEEETTT--------SBETTTTCBTTTSS
T ss_pred CCCCCCCccCcEEEEEe--CCcEEEccc--------cccCCCCCccCCCe
Confidence 66677777655544322 678899888 67888888886654
No 130
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=86.69 E-value=1.6 Score=27.21 Aligned_cols=33 Identities=21% Similarity=0.216 Sum_probs=24.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 038049 5 NIMVIVAAMLCALVCALGLHSMLQCVFQCTQRA 37 (141)
Q Consensus 5 ~~~~i~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 37 (141)
.|-+++++++.+++..+++++.+.|-.+++.+.
T Consensus 16 sW~~LVGVv~~al~~SlLIalaaKC~~~~k~~~ 48 (102)
T PF15176_consen 16 SWPFLVGVVVTALVTSLLIALAAKCPVWYKYLA 48 (102)
T ss_pred ccHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 567788888888888888888887765554443
No 131
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=86.55 E-value=2.9 Score=21.26 Aligned_cols=6 Identities=50% Similarity=0.811 Sum_probs=2.2
Q ss_pred HHHHHH
Q 038049 8 VIVAAM 13 (141)
Q Consensus 8 ~i~~~~ 13 (141)
++++++
T Consensus 8 IIv~V~ 13 (38)
T PF02439_consen 8 IIVAVV 13 (38)
T ss_pred HHHHHH
Confidence 333333
No 132
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=86.18 E-value=3.9 Score=30.99 Aligned_cols=44 Identities=18% Similarity=0.316 Sum_probs=32.5
Q ss_pred cccccccccccccCCceeecCCCCCcccHhhHHHHHcCCC---ccccc
Q 038049 78 SAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHS---SCPTC 122 (141)
Q Consensus 78 ~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~---~CP~C 122 (141)
--.||+=-+.-.+......+. |||+.-..-++..-+++. .||+|
T Consensus 336 ~FiCPVlKe~~t~ENpP~ml~-CgHVIskeal~~LS~nG~~~FKCPYC 382 (396)
T COG5109 336 LFICPVLKELCTDENPPVMLE-CGHVISKEALSVLSQNGVLSFKCPYC 382 (396)
T ss_pred eeeccccHhhhcccCCCeeee-ccceeeHHHHHHHhhcCcEEeeCCCC
Confidence 356888766655555556776 999999999998765542 49999
No 133
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=85.90 E-value=0.72 Score=24.98 Aligned_cols=43 Identities=21% Similarity=0.472 Sum_probs=18.4
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHHHcCC-----Ccccccccc
Q 038049 79 AGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSH-----SSCPTCRQR 125 (141)
Q Consensus 79 ~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~-----~~CP~CR~~ 125 (141)
..|+|-...+.. .+|-.. |.|.-+-| ++.|+... -.||+|.++
T Consensus 3 L~CPls~~~i~~--P~Rg~~-C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRI--PVRGKN-CKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SS--EEEETT---SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEe--CccCCc-CcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 358887777644 356565 99884322 33455332 259999864
No 134
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=84.57 E-value=0.71 Score=23.30 Aligned_cols=26 Identities=38% Similarity=0.814 Sum_probs=16.2
Q ss_pred ccccccccccccCCc--------eeecCCCCCccc
Q 038049 79 AGCAICLLDFIDGDE--------IRLLPKCNHRFH 105 (141)
Q Consensus 79 ~~C~ICl~~~~~~~~--------v~~lp~C~H~Fh 105 (141)
.+|+=|...|..++. ++ -+.|+|+|.
T Consensus 3 i~CP~C~~~f~v~~~~l~~~~~~vr-C~~C~~~f~ 36 (37)
T PF13719_consen 3 ITCPNCQTRFRVPDDKLPAGGRKVR-CPKCGHVFR 36 (37)
T ss_pred EECCCCCceEEcCHHHcccCCcEEE-CCCCCcEee
Confidence 468888877765442 33 334888875
No 136
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.38 E-value=0.44 Score=37.02 Aligned_cols=44 Identities=20% Similarity=0.495 Sum_probs=31.7
Q ss_pred cccccccccccccCCc--eeecCCCCCcccHhhHHHHHcCCCccccc
Q 038049 78 SAGCAICLLDFIDGDE--IRLLPKCNHRFHVACIDKWLLSHSSCPTC 122 (141)
Q Consensus 78 ~~~C~ICl~~~~~~~~--v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~C 122 (141)
-..|+.|.-.++-.+. -..-. |||.|++.|...|...+..|..|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEee-ccccchhhcCcchhhCCccccCc
Confidence 3569999876655443 23444 99999999999998777766443
No 137
>PHA03029 hypothetical protein; Provisional
Probab=83.19 E-value=2.5 Score=24.91 Aligned_cols=29 Identities=10% Similarity=0.290 Sum_probs=14.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038049 4 LNIMVIVAAMLCALVCALGLHSMLQCVFQ 32 (141)
Q Consensus 4 ~~~~~i~~~~l~~~~~~l~~~~~~~~~~~ 32 (141)
..++..++++++.+++++.+..++.-+..
T Consensus 4 ~ei~~~ii~~iiyiilila~igiiwg~ll 32 (92)
T PHA03029 4 AEIVFLIIAIIIYIILILAIIGIIWGFLL 32 (92)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555544433
No 138
>PF15179 Myc_target_1: Myc target protein 1
Probab=83.18 E-value=3.1 Score=28.92 Aligned_cols=26 Identities=12% Similarity=0.121 Sum_probs=11.3
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHH
Q 038049 1 SADLNIMVIVAAMLCALVCALGLHSM 26 (141)
Q Consensus 1 s~~~~~~~i~~~~l~~~~~~l~~~~~ 26 (141)
|||+.-+++.+-+-.++.++||.++.
T Consensus 15 ~f~~~~lIlaF~vSm~iGLviG~li~ 40 (197)
T PF15179_consen 15 NFDWEDLILAFCVSMAIGLVIGALIW 40 (197)
T ss_pred hcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 45444444444444444444443333
No 139
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=83.08 E-value=0.58 Score=26.83 Aligned_cols=38 Identities=18% Similarity=0.336 Sum_probs=18.6
Q ss_pred CCcccccccccccccCCceeecCCCCCcccHhhHHHHH
Q 038049 76 SASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWL 113 (141)
Q Consensus 76 ~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl 113 (141)
.+...|.+|...|.--..-..-..||++|+.+|.....
T Consensus 7 ~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 7 SEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp GG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 34577999999995432222222599999999987554
No 140
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=83.03 E-value=1.8 Score=32.70 Aligned_cols=53 Identities=23% Similarity=0.520 Sum_probs=36.1
Q ss_pred Cccccccccccccc---------------C-CceeecCCCCCcccHhhHHHHHcC---------CCccccccccccCCC
Q 038049 77 ASAGCAICLLDFID---------------G-DEIRLLPKCNHRFHVACIDKWLLS---------HSSCPTCRQRLKPSD 130 (141)
Q Consensus 77 ~~~~C~ICl~~~~~---------------~-~~v~~lp~C~H~Fh~~Ci~~wl~~---------~~~CP~CR~~~~~~~ 130 (141)
.+.+|++|+..-.. + -.-...| |||+--++=..-|-+. +..||.|-+.+..+.
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~P-CGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge~ 417 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNP-CGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGEQ 417 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCC-cccccchhhhhHhhcCcCCCccccccccCcchhhhhccCC
Confidence 46899999954210 0 0112466 9999999999999754 234999988876554
No 141
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.57 E-value=0.46 Score=35.48 Aligned_cols=49 Identities=24% Similarity=0.565 Sum_probs=39.6
Q ss_pred CCCcccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccc
Q 038049 75 SSASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRL 126 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~ 126 (141)
......|-||...+..+.... +|.|.|+..|-..|......||.||.-.
T Consensus 102 ~~~~~~~~~~~g~l~vpt~~q---g~w~qf~~~~p~~~~~~~~~~~d~~~~~ 150 (324)
T KOG0824|consen 102 QQDHDICYICYGKLTVPTRIQ---GCWHQFCYVCPKSNFAMGNDCPDCRGKI 150 (324)
T ss_pred cCCccceeeeeeeEEeccccc---CceeeeeecCCchhhhhhhccchhhcCc
Confidence 445677999998887764332 4999999999999999999999998744
No 142
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=82.46 E-value=2.5 Score=31.81 Aligned_cols=13 Identities=0% Similarity=0.258 Sum_probs=5.8
Q ss_pred HHHHHHHHHHhcc
Q 038049 23 LHSMLQCVFQCTQ 35 (141)
Q Consensus 23 ~~~~~~~~~~~~~ 35 (141)
++.++++++|+||
T Consensus 271 IMvIIYLILRYRR 283 (299)
T PF02009_consen 271 IMVIIYLILRYRR 283 (299)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444555444
No 143
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=82.13 E-value=1.1 Score=29.27 Aligned_cols=10 Identities=10% Similarity=0.019 Sum_probs=4.9
Q ss_pred HHHhcccccC
Q 038049 30 VFQCTQRALT 39 (141)
Q Consensus 30 ~~~~~~~~~~ 39 (141)
+++.+||.++
T Consensus 20 ~~~~rRR~r~ 29 (130)
T PF12273_consen 20 YCHNRRRRRR 29 (130)
T ss_pred HHHHHHHhhc
Confidence 4445555444
No 144
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=81.95 E-value=1.1 Score=37.76 Aligned_cols=52 Identities=12% Similarity=0.166 Sum_probs=35.3
Q ss_pred CCcccccccccccccCCc---eeecCCCCCcccHhhHHHHHcC------CCcccccccccc
Q 038049 76 SASAGCAICLLDFIDGDE---IRLLPKCNHRFHVACIDKWLLS------HSSCPTCRQRLK 127 (141)
Q Consensus 76 ~~~~~C~ICl~~~~~~~~---v~~lp~C~H~Fh~~Ci~~wl~~------~~~CP~CR~~~~ 127 (141)
....+|.+|..++.+++. +-.+.+|+|.||..||..|..+ +-.|+.|.+-+.
T Consensus 94 a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 94 AESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG 154 (1134)
T ss_pred ccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence 345678888888776322 2222259999999999999843 234788877553
No 145
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.83 E-value=1.1 Score=32.70 Aligned_cols=37 Identities=19% Similarity=0.263 Sum_probs=30.7
Q ss_pred CCCcccccccccccccCCceeecCCCCCcccHhhHHHHHcC
Q 038049 75 SSASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLS 115 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~ 115 (141)
..+.+.|+.||.++.++ .++| =||+|..+||-+++..
T Consensus 40 iK~FdcCsLtLqPc~dP---vit~-~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 40 IKPFDCCSLTLQPCRDP---VITP-DGYLFDREAILEYILA 76 (303)
T ss_pred cCCcceeeeecccccCC---ccCC-CCeeeeHHHHHHHHHH
Confidence 45567899999988777 6777 8999999999999754
No 146
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=81.65 E-value=0.91 Score=22.80 Aligned_cols=26 Identities=35% Similarity=0.686 Sum_probs=16.3
Q ss_pred ccccccccccccCCc--------eeecCCCCCccc
Q 038049 79 AGCAICLLDFIDGDE--------IRLLPKCNHRFH 105 (141)
Q Consensus 79 ~~C~ICl~~~~~~~~--------v~~lp~C~H~Fh 105 (141)
.+|+=|...|..++. ++-. .|||.|+
T Consensus 3 i~Cp~C~~~y~i~d~~ip~~g~~v~C~-~C~~~f~ 36 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDEKIPPKGRKVRCS-KCGHVFF 36 (36)
T ss_pred EECCCCCCEEeCCHHHCCCCCcEEECC-CCCCEeC
Confidence 467888877765543 3333 4888874
No 147
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=81.52 E-value=0.74 Score=24.61 Aligned_cols=44 Identities=32% Similarity=0.622 Sum_probs=28.4
Q ss_pred cccccccccccCCceeecCCCCCcccHhhHHHHHc------CCCccccccc
Q 038049 80 GCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLL------SHSSCPTCRQ 124 (141)
Q Consensus 80 ~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~------~~~~CP~CR~ 124 (141)
.|.||...-..++.+.-- .|+-.||..|+..=.. ..-.||.|+.
T Consensus 1 ~C~vC~~~~~~~~~i~C~-~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCD-SCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTTSSEEEBS-TTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCCCCCeEEcC-CCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 388998844444444444 5999999999876432 1335888753
No 148
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=81.31 E-value=2.5 Score=23.48 Aligned_cols=45 Identities=27% Similarity=0.654 Sum_probs=31.5
Q ss_pred cccccccccccCC-ceeecCCCC--CcccHhhHHHHHcCCCccccccccccCC
Q 038049 80 GCAICLLDFIDGD-EIRLLPKCN--HRFHVACIDKWLLSHSSCPTCRQRLKPS 129 (141)
Q Consensus 80 ~C~ICl~~~~~~~-~v~~lp~C~--H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~ 129 (141)
.|--|-.++..+. ..++ |+ ..|+.+|.+.-| +..||.|.-.+...
T Consensus 7 nCE~C~~dLp~~s~~A~I---CSfECTFC~~C~e~~l--~~~CPNCgGelv~R 54 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYI---CSFECTFCADCAETML--NGVCPNCGGELVRR 54 (57)
T ss_pred CccccCCCCCCCCCcceE---EeEeCcccHHHHHHHh--cCcCcCCCCccccC
Confidence 4666766665554 2332 55 459999999976 68899998877654
No 149
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=81.08 E-value=0.13 Score=30.01 Aligned_cols=40 Identities=25% Similarity=0.502 Sum_probs=20.3
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCcccccccccc
Q 038049 79 AGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLK 127 (141)
Q Consensus 79 ~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~ 127 (141)
..|+.|..++.... +|..+..|-.. +.....||-|.+++.
T Consensus 2 ~~CP~C~~~L~~~~--------~~~~C~~C~~~-~~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEWQG--------GHYHCEACQKD-YKKEAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEEET--------TEEEETTT--E-EEEEEE-TTT-SB-E
T ss_pred CcCCCCCCccEEeC--------CEEECcccccc-ceecccCCCcccHHH
Confidence 46899987765442 55566666554 244567999988764
No 150
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=79.65 E-value=2.5 Score=27.44 Aligned_cols=25 Identities=12% Similarity=0.247 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHhcccccCC
Q 038049 16 ALVCALGLHSMLQCVFQCTQRALTE 40 (141)
Q Consensus 16 ~~~~~l~~~~~~~~~~~~~~~~~~~ 40 (141)
++.++.|++.++.++.++.+|.+..
T Consensus 70 i~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 70 IFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3334445555666666666655443
No 151
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=78.63 E-value=6.1 Score=23.18 Aligned_cols=27 Identities=7% Similarity=0.112 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038049 7 MVIVAAMLCALVCALGLHSMLQCVFQC 33 (141)
Q Consensus 7 ~~i~~~~l~~~~~~l~~~~~~~~~~~~ 33 (141)
.+.++++.+++++++++.+++..+.+.
T Consensus 6 ~i~i~Gm~iVF~~L~lL~~~i~l~~~~ 32 (79)
T PF04277_consen 6 QIMIIGMGIVFLVLILLILVISLMSKL 32 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 152
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=77.50 E-value=10 Score=21.88 Aligned_cols=18 Identities=11% Similarity=0.368 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 038049 16 ALVCALGLHSMLQCVFQC 33 (141)
Q Consensus 16 ~~~~~l~~~~~~~~~~~~ 33 (141)
+++++.++.++++.++.+
T Consensus 8 i~ICVaii~lIlY~iYnr 25 (68)
T PF05961_consen 8 IIICVAIIGLILYGIYNR 25 (68)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 333334444444444443
No 153
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=76.54 E-value=4.9 Score=23.91 Aligned_cols=57 Identities=21% Similarity=0.419 Sum_probs=21.1
Q ss_pred CcccccccccccccCCc--eeec-CCCCCcccHhhHHHHHc-CCCccccccccccCCCCCC
Q 038049 77 ASAGCAICLLDFIDGDE--IRLL-PKCNHRFHVACIDKWLL-SHSSCPTCRQRLKPSDAMP 133 (141)
Q Consensus 77 ~~~~C~ICl~~~~~~~~--v~~l-p~C~H~Fh~~Ci~~wl~-~~~~CP~CR~~~~~~~~~~ 133 (141)
+...|-||-++...... +.+. ..|+--.+..|.+-=.+ .++.||.|+.+...-++.|
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~kgsp 68 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRHKGSP 68 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----TT--
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcccccCCC
Confidence 34679999988754332 2221 13666678999875444 4678999999887555444
No 154
>PF15102 TMEM154: TMEM154 protein family
Probab=76.45 E-value=0.45 Score=31.77 Aligned_cols=6 Identities=50% Similarity=1.370 Sum_probs=2.7
Q ss_pred HHHHHc
Q 038049 109 IDKWLL 114 (141)
Q Consensus 109 i~~wl~ 114 (141)
++.|+.
T Consensus 130 ldkwm~ 135 (146)
T PF15102_consen 130 LDKWMN 135 (146)
T ss_pred HHhHHH
Confidence 444543
No 155
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=76.14 E-value=2.3 Score=23.19 Aligned_cols=36 Identities=17% Similarity=0.302 Sum_probs=24.5
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHHHc
Q 038049 79 AGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLL 114 (141)
Q Consensus 79 ~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~ 114 (141)
..|.+|-..|..-..-..-..||++|+.+|......
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 568899877755332222225999999999887654
No 156
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=75.05 E-value=2.6 Score=31.98 Aligned_cols=49 Identities=27% Similarity=0.581 Sum_probs=35.4
Q ss_pred ccccccccccccCCc-eeecCCCCCcccHhhHHHHHcCCCccccccccccC
Q 038049 79 AGCAICLLDFIDGDE-IRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKP 128 (141)
Q Consensus 79 ~~C~ICl~~~~~~~~-v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~ 128 (141)
..|+||-+.....+. ..-.| |++..|..|...-...+.+||.||++...
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~-~~~~~~l~~~~t~~~~~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCP-CGFRLCLFCHKTISDGDGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCccccccccccccc-ccccchhhhhhcccccCCCCCccCCcccc
Confidence 679999988743332 22233 88888888877777778899999976643
No 157
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=74.74 E-value=1.7 Score=21.21 Aligned_cols=20 Identities=20% Similarity=0.512 Sum_probs=12.3
Q ss_pred CCCcccHhhHHHHHcCCCcccccccc
Q 038049 100 CNHRFHVACIDKWLLSHSSCPTCRQR 125 (141)
Q Consensus 100 C~H~Fh~~Ci~~wl~~~~~CP~CR~~ 125 (141)
|||++-..- ....||+|.++
T Consensus 7 CGy~y~~~~------~~~~CP~Cg~~ 26 (33)
T cd00350 7 CGYIYDGEE------APWVCPVCGAP 26 (33)
T ss_pred CCCEECCCc------CCCcCcCCCCc
Confidence 666654432 34579999763
No 158
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=74.68 E-value=1.9 Score=24.79 Aligned_cols=11 Identities=36% Similarity=1.011 Sum_probs=8.3
Q ss_pred ccHhhHHHHHc
Q 038049 104 FHVACIDKWLL 114 (141)
Q Consensus 104 Fh~~Ci~~wl~ 114 (141)
||..|+..|+.
T Consensus 12 FCRNCLskWy~ 22 (68)
T PF06844_consen 12 FCRNCLSKWYR 22 (68)
T ss_dssp --HHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999985
No 159
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=74.68 E-value=3.6 Score=23.47 Aligned_cols=36 Identities=14% Similarity=0.227 Sum_probs=25.0
Q ss_pred Cccccccccccccc--CCceeecCCCCCcccHhhHHHH
Q 038049 77 ASAGCAICLLDFID--GDEIRLLPKCNHRFHVACIDKW 112 (141)
Q Consensus 77 ~~~~C~ICl~~~~~--~~~v~~lp~C~H~Fh~~Ci~~w 112 (141)
...+|+.|-..... .+.....|.||+.+|.|-.-.+
T Consensus 27 TSq~C~~CG~~~~~~~~~r~~~C~~Cg~~~~rD~naA~ 64 (69)
T PF07282_consen 27 TSQTCPRCGHRNKKRRSGRVFTCPNCGFEMDRDVNAAR 64 (69)
T ss_pred CccCccCcccccccccccceEEcCCCCCEECcHHHHHH
Confidence 34779999887766 4445556669998888755443
No 160
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=73.79 E-value=0.85 Score=24.98 Aligned_cols=13 Identities=31% Similarity=0.861 Sum_probs=6.6
Q ss_pred CccccccccccCC
Q 038049 117 SSCPTCRQRLKPS 129 (141)
Q Consensus 117 ~~CP~CR~~~~~~ 129 (141)
..||+|.+++.+.
T Consensus 21 ~~CPlC~r~l~~e 33 (54)
T PF04423_consen 21 GCCPLCGRPLDEE 33 (54)
T ss_dssp EE-TTT--EE-HH
T ss_pred CcCCCCCCCCCHH
Confidence 3799999988654
No 161
>PRK01844 hypothetical protein; Provisional
Probab=72.68 E-value=17 Score=21.33 Aligned_cols=18 Identities=22% Similarity=0.325 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 038049 8 VIVAAMLCALVCALGLHS 25 (141)
Q Consensus 8 ~i~~~~l~~~~~~l~~~~ 25 (141)
++++++.+++.++++++.
T Consensus 7 I~l~I~~li~G~~~Gff~ 24 (72)
T PRK01844 7 ILVGVVALVAGVALGFFI 24 (72)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 162
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=72.22 E-value=1.2 Score=34.56 Aligned_cols=51 Identities=24% Similarity=0.451 Sum_probs=0.0
Q ss_pred cccccccccccc-------------cC---CceeecCCCCCcccHhhHHHHHcC---------CCccccccccccCC
Q 038049 78 SAGCAICLLDFI-------------DG---DEIRLLPKCNHRFHVACIDKWLLS---------HSSCPTCRQRLKPS 129 (141)
Q Consensus 78 ~~~C~ICl~~~~-------------~~---~~v~~lp~C~H~Fh~~Ci~~wl~~---------~~~CP~CR~~~~~~ 129 (141)
..+|++|+..-. .+ -.-...| |||+--.+...-|-+. +..||-|-.+|...
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~P-CGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~ 403 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNP-CGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDGE 403 (416)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecc-cccccchhhhhhhhcCCCCCCcccccccCCcccCcccCC
Confidence 688999994421 01 1123466 9999999999999753 23599998888643
No 164
>PTZ00046 rifin; Provisional
Probab=72.18 E-value=7.8 Score=29.90 Aligned_cols=14 Identities=0% Similarity=0.304 Sum_probs=6.3
Q ss_pred HHHHHHHHHHhccc
Q 038049 23 LHSMLQCVFQCTQR 36 (141)
Q Consensus 23 ~~~~~~~~~~~~~~ 36 (141)
+..++++++|+||.
T Consensus 330 IMvIIYLILRYRRK 343 (358)
T PTZ00046 330 IMVIIYLILRYRRK 343 (358)
T ss_pred HHHHHHHHHHhhhc
Confidence 33444445554443
No 165
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=71.93 E-value=8 Score=29.77 Aligned_cols=14 Identities=0% Similarity=0.304 Sum_probs=6.4
Q ss_pred HHHHHHHHHHhccc
Q 038049 23 LHSMLQCVFQCTQR 36 (141)
Q Consensus 23 ~~~~~~~~~~~~~~ 36 (141)
+..++++++|+||.
T Consensus 325 IMvIIYLILRYRRK 338 (353)
T TIGR01477 325 IMVIIYLILRYRRK 338 (353)
T ss_pred HHHHHHHHHHhhhc
Confidence 33444445554443
No 166
>PF14979 TMEM52: Transmembrane 52
Probab=71.88 E-value=12 Score=25.15 Aligned_cols=27 Identities=22% Similarity=0.440 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038049 6 IMVIVAAMLCALVCALGLHSMLQCVFQ 32 (141)
Q Consensus 6 ~~~i~~~~l~~~~~~l~~~~~~~~~~~ 32 (141)
+|+++.+++..++..+....+-+|+.+
T Consensus 22 IwLill~~~llLLCG~ta~C~rfCClr 48 (154)
T PF14979_consen 22 IWLILLIGFLLLLCGLTASCVRFCCLR 48 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444444444433333334443
No 167
>PLN02195 cellulose synthase A
Probab=71.69 E-value=5.9 Score=34.47 Aligned_cols=57 Identities=14% Similarity=0.391 Sum_probs=37.5
Q ss_pred CcccccccccccccCCc----eeecCCCCCcccHhhHHHHHc--CCCccccccccccCCCCCCCc
Q 038049 77 ASAGCAICLLDFIDGDE----IRLLPKCNHRFHVACIDKWLL--SHSSCPTCRQRLKPSDAMPSL 135 (141)
Q Consensus 77 ~~~~C~ICl~~~~~~~~----v~~lp~C~H~Fh~~Ci~~wl~--~~~~CP~CR~~~~~~~~~~~~ 135 (141)
+...|.||-++...... |..- .|+---|..|. ++=+ .++.||.|++...+.+...+.
T Consensus 5 ~~~~c~~cgd~~~~~~~g~~fvaC~-eC~~pvCrpCy-eyer~eg~q~CpqCkt~Yk~~~~~~d~ 67 (977)
T PLN02195 5 GAPICATCGEEVGVDSNGEAFVACH-ECSYPLCKACL-EYEIKEGRKVCLRCGGPYDAENVFDDV 67 (977)
T ss_pred CCccceecccccCcCCCCCeEEEec-cCCCccccchh-hhhhhcCCccCCccCCccccccccchh
Confidence 34579999987754321 2222 37777999998 4432 357799999999865554443
No 168
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=70.56 E-value=2.9 Score=30.64 Aligned_cols=45 Identities=20% Similarity=0.291 Sum_probs=31.6
Q ss_pred cccccccccccccCCceeecCCCCCcccHhhHHHHHcCC--Ccccccccc
Q 038049 78 SAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSH--SSCPTCRQR 125 (141)
Q Consensus 78 ~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~--~~CP~CR~~ 125 (141)
+..|+|=.-.+..+ .+...|||+|-.+=|...+... -.||+=-.+
T Consensus 176 s~rdPis~~~I~nP---viSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 176 SNRDPISKKPIVNP---VISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred cccCchhhhhhhch---hhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 45788876666554 2333599999999999998774 348864433
No 169
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=70.27 E-value=2.5 Score=34.89 Aligned_cols=29 Identities=17% Similarity=0.164 Sum_probs=19.2
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038049 3 DLNIMVIVAAMLCALVCALGLHSMLQCVF 31 (141)
Q Consensus 3 ~~~~~~i~~~~l~~~~~~l~~~~~~~~~~ 31 (141)
+.|.|||+++++.+++++++++++.+.+.
T Consensus 266 ~~NlWII~gVlvPv~vV~~Iiiil~~~LC 294 (684)
T PF12877_consen 266 PNNLWIIAGVLVPVLVVLLIIIILYWKLC 294 (684)
T ss_pred CCCeEEEehHhHHHHHHHHHHHHHHHHHh
Confidence 46788888888777776665555554333
No 170
>PHA02657 hypothetical protein; Provisional
Probab=69.83 E-value=16 Score=22.18 Aligned_cols=26 Identities=4% Similarity=0.069 Sum_probs=12.7
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHH
Q 038049 1 SADLNIMVIVAAMLCALVCALGLHSM 26 (141)
Q Consensus 1 s~~~~~~~i~~~~l~~~~~~l~~~~~ 26 (141)
+|.+.+.+.+.++++.++.++++.+.
T Consensus 23 ~~~~imVitvfv~vI~il~flLLYLv 48 (95)
T PHA02657 23 NFESILVFTIFIFVVCILIYLLIYLV 48 (95)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555444444333
No 171
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=69.43 E-value=1.6 Score=30.03 Aligned_cols=10 Identities=20% Similarity=0.434 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 038049 8 VIVAAMLCAL 17 (141)
Q Consensus 8 ~i~~~~l~~~ 17 (141)
++++++++++
T Consensus 80 iivgvi~~Vi 89 (179)
T PF13908_consen 80 IIVGVICGVI 89 (179)
T ss_pred eeeehhhHHH
Confidence 3333433333
No 172
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=69.15 E-value=5.2 Score=26.70 Aligned_cols=18 Identities=28% Similarity=0.709 Sum_probs=13.5
Q ss_pred CccccccccccCCCCCCC
Q 038049 117 SSCPTCRQRLKPSDAMPS 134 (141)
Q Consensus 117 ~~CP~CR~~~~~~~~~~~ 134 (141)
..||.|...+...+....
T Consensus 124 f~Cp~Cg~~l~~~dn~~~ 141 (147)
T smart00531 124 FTCPRCGEELEEDDNSEP 141 (147)
T ss_pred EECCCCCCEEEEcCchhh
Confidence 679999999976655433
No 173
>PRK05978 hypothetical protein; Provisional
Probab=69.13 E-value=3.2 Score=27.92 Aligned_cols=28 Identities=21% Similarity=0.640 Sum_probs=21.6
Q ss_pred CCCC--CcccHhhHHHHHcCCCccccccccccCCC
Q 038049 98 PKCN--HRFHVACIDKWLLSHSSCPTCRQRLKPSD 130 (141)
Q Consensus 98 p~C~--H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~~ 130 (141)
|.|| |.|+ .+++.+..||.|-.++...+
T Consensus 37 P~CG~G~LF~-----g~Lkv~~~C~~CG~~~~~~~ 66 (148)
T PRK05978 37 PACGEGKLFR-----AFLKPVDHCAACGEDFTHHR 66 (148)
T ss_pred CCCCCCcccc-----cccccCCCccccCCccccCC
Confidence 3454 7886 68888999999999887553
No 174
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=68.85 E-value=2.6 Score=23.76 Aligned_cols=15 Identities=20% Similarity=0.733 Sum_probs=11.4
Q ss_pred CCccccccccccCCC
Q 038049 116 HSSCPTCRQRLKPSD 130 (141)
Q Consensus 116 ~~~CP~CR~~~~~~~ 130 (141)
.+.||+|..+.....
T Consensus 39 ~p~CPlC~s~M~~~~ 53 (59)
T PF14169_consen 39 EPVCPLCKSPMVSGT 53 (59)
T ss_pred CccCCCcCCccccce
Confidence 467999999886554
No 175
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=68.79 E-value=1.5 Score=24.42 Aligned_cols=19 Identities=32% Similarity=0.710 Sum_probs=14.6
Q ss_pred eeecCCCCCcccHhhHHHH
Q 038049 94 IRLLPKCNHRFHVACIDKW 112 (141)
Q Consensus 94 v~~lp~C~H~Fh~~Ci~~w 112 (141)
...-|.|||.|+..|-.+|
T Consensus 40 ~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 40 RVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred eeECCCCCCeECCCCCCcC
Confidence 3444359999999998888
No 176
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=68.18 E-value=5.1 Score=18.94 Aligned_cols=29 Identities=17% Similarity=0.392 Sum_probs=10.2
Q ss_pred cccccccccccCCceeecCCCCCcccHhhH
Q 038049 80 GCAICLLDFIDGDEIRLLPKCNHRFHVACI 109 (141)
Q Consensus 80 ~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci 109 (141)
.|.+|..+... +....-+.|.-.+|..|+
T Consensus 2 ~C~~C~~~~~~-~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDG-GWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S---EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCC-CceEECccCCCccChhcC
Confidence 47888877655 344444459999999885
No 177
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.37 E-value=5.7 Score=23.29 Aligned_cols=34 Identities=26% Similarity=0.613 Sum_probs=25.9
Q ss_pred CCcccHhhHHHHHcCCCccccccccccCCCCCCCch
Q 038049 101 NHRFHVACIDKWLLSHSSCPTCRQRLKPSDAMPSLD 136 (141)
Q Consensus 101 ~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~~~~~~~~ 136 (141)
.|.|+.+|.+.-| +..||.|--.+......|...
T Consensus 28 EcTFCadCae~~l--~g~CPnCGGelv~RP~RPaa~ 61 (84)
T COG3813 28 ECTFCADCAENRL--HGLCPNCGGELVARPIRPAAK 61 (84)
T ss_pred eeehhHhHHHHhh--cCcCCCCCchhhcCcCChHHH
Confidence 3789999998754 578999998888776655443
No 178
>PLN02189 cellulose synthase
Probab=67.03 E-value=6.7 Score=34.40 Aligned_cols=50 Identities=20% Similarity=0.495 Sum_probs=33.3
Q ss_pred CcccccccccccccC--Cceeec-CCCCCcccHhhHHHHHc--CCCcccccccccc
Q 038049 77 ASAGCAICLLDFIDG--DEIRLL-PKCNHRFHVACIDKWLL--SHSSCPTCRQRLK 127 (141)
Q Consensus 77 ~~~~C~ICl~~~~~~--~~v~~l-p~C~H~Fh~~Ci~~wl~--~~~~CP~CR~~~~ 127 (141)
+...|.||-++.... ..+.+. ..|+---|..|. ++=+ .++.||.|++...
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cy-eyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCY-EYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchh-hhhhhcCCccCcccCCchh
Confidence 345799999997532 223322 236666899998 4432 3577999999886
No 179
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=66.96 E-value=1.8 Score=32.35 Aligned_cols=24 Identities=13% Similarity=0.308 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Q 038049 13 MLCALVCALGLHSMLQCVFQCTQR 36 (141)
Q Consensus 13 ~l~~~~~~l~~~~~~~~~~~~~~~ 36 (141)
..++++++++++.++.++.++++|
T Consensus 151 paVVI~~iLLIA~iIa~icyrrkR 174 (290)
T PF05454_consen 151 PAVVIAAILLIAGIIACICYRRKR 174 (290)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhh
Confidence 333333344444444444444444
No 180
>PF02723 NS3_envE: Non-structural protein NS3/Small envelope protein E; InterPro: IPR003873 This is a family of small nonstructural proteins, well conserved among Coronavirus strains. This protein is also found in Murine hepatitis virus as small envelope protein E.; GO: 0016020 membrane
Probab=64.32 E-value=24 Score=21.26 Aligned_cols=31 Identities=29% Similarity=0.607 Sum_probs=18.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 038049 5 NIMVIVAAMLCALVCALGLHSMLQCVFQCTQ 35 (141)
Q Consensus 5 ~~~~i~~~~l~~~~~~l~~~~~~~~~~~~~~ 35 (141)
++.+++.+.++.+++.+.++..+..++.+.+
T Consensus 15 Niil~llvc~~~liv~~AlL~~IqLC~~cc~ 45 (82)
T PF02723_consen 15 NIILWLLVCLVVLIVCIALLQLIQLCFQCCR 45 (82)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455555556666666666666766666554
No 181
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=64.13 E-value=13 Score=23.30 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=12.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038049 5 NIMVIVAAMLCALVCALGLHSMLQCVFQ 32 (141)
Q Consensus 5 ~~~~i~~~~l~~~~~~l~~~~~~~~~~~ 32 (141)
++++.+++++..++++..+..++..++.
T Consensus 15 sl~~~~~~l~~~~~~l~ll~~ll~~~~~ 42 (108)
T PF07219_consen 15 SLWVALILLLLLFVVLYLLLRLLRRLLS 42 (108)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444444443
No 182
>PRK00523 hypothetical protein; Provisional
Probab=62.72 E-value=29 Score=20.34 Aligned_cols=32 Identities=9% Similarity=-0.090 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q 038049 8 VIVAAMLCALVCALGLHSMLQCVFQCTQRALT 39 (141)
Q Consensus 8 ~i~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 39 (141)
+.+++++.++.++++++.-++.-.+...++..
T Consensus 4 ~~l~I~l~i~~li~G~~~Gffiark~~~k~l~ 35 (72)
T PRK00523 4 IGLALGLGIPLLIVGGIIGYFVSKKMFKKQIR 35 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555666666666554444444433
No 183
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=62.40 E-value=12 Score=20.24 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 038049 8 VIVAAMLCALVCALGLHSMLQ 28 (141)
Q Consensus 8 ~i~~~~l~~~~~~l~~~~~~~ 28 (141)
-+-+.++.+++++++++.++.
T Consensus 15 rigGLi~A~vlfi~Gi~iils 35 (50)
T PF02038_consen 15 RIGGLIFAGVLFILGILIILS 35 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT
T ss_pred hccchHHHHHHHHHHHHHHHc
Confidence 344555555666666655553
No 184
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=61.77 E-value=4.9 Score=29.16 Aligned_cols=41 Identities=34% Similarity=0.491 Sum_probs=30.7
Q ss_pred cccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCc--ccc
Q 038049 78 SAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSS--CPT 121 (141)
Q Consensus 78 ~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~--CP~ 121 (141)
+..|+|=+.++..+ ....+|+|.|-.+-|...++...+ ||.
T Consensus 189 ~nrCpitl~p~~~p---ils~kcnh~~e~D~I~~~lq~~~trvcp~ 231 (275)
T COG5627 189 SNRCPITLNPDFYP---ILSSKCNHKPEMDLINKKLQVECTRVCPR 231 (275)
T ss_pred cccCCcccCcchhH---HHHhhhcccccHHHHHHHhcCCceeecch
Confidence 56899988776544 344469999999999999986544 653
No 185
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=61.55 E-value=4.2 Score=34.07 Aligned_cols=36 Identities=28% Similarity=0.630 Sum_probs=28.7
Q ss_pred ceeecCCCCCcccHhhHHHHHcCCCccccccccccC
Q 038049 93 EIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKP 128 (141)
Q Consensus 93 ~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~ 128 (141)
.+...|+|.-+||.+=++.-..++.-||.||.+...
T Consensus 1043 ~it~Cp~C~~~F~~eDFEl~vLqKGHCPFCrTS~dd 1078 (1081)
T KOG1538|consen 1043 SITMCPSCFQMFHSEDFELLVLQKGHCPFCRTSKDD 1078 (1081)
T ss_pred hhhhCchHHhhhccchhhHHHHhcCCCCcccccccC
Confidence 344566788889988888887888999999998653
No 186
>PF12907 zf-met2: Zinc-binding
Probab=61.00 E-value=1.1 Score=23.11 Aligned_cols=21 Identities=33% Similarity=0.643 Sum_probs=10.6
Q ss_pred ccccccccccCCCCCCCchhh
Q 038049 118 SCPTCRQRLKPSDAMPSLDEI 138 (141)
Q Consensus 118 ~CP~CR~~~~~~~~~~~~~~~ 138 (141)
.|++||+.+..-...+.+.|+
T Consensus 3 ~C~iC~qtF~~t~~~~~L~eH 23 (40)
T PF12907_consen 3 ICKICRQTFMQTTNEPQLKEH 23 (40)
T ss_pred CcHHhhHHHHhcCCHHHHHHH
Confidence 477777655444333334433
No 187
>PRK14762 membrane protein; Provisional
Probab=60.64 E-value=16 Score=16.70 Aligned_cols=19 Identities=16% Similarity=0.406 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 038049 6 IMVIVAAMLCALVCALGLH 24 (141)
Q Consensus 6 ~~~i~~~~l~~~~~~l~~~ 24 (141)
.|++.+++++.++++.+.+
T Consensus 5 lw~i~iifligllvvtgvf 23 (27)
T PRK14762 5 LWAVLIIFLIGLLVVTGVF 23 (27)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555443
No 188
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=60.09 E-value=1.7 Score=22.50 Aligned_cols=25 Identities=28% Similarity=0.553 Sum_probs=14.0
Q ss_pred CCCCcccHhhHHHHHcCCCccccccc
Q 038049 99 KCNHRFHVACIDKWLLSHSSCPTCRQ 124 (141)
Q Consensus 99 ~C~H~Fh~~Ci~~wl~~~~~CP~CR~ 124 (141)
.|||.|-..--..= .....||.|..
T Consensus 10 ~Cg~~fe~~~~~~~-~~~~~CP~Cg~ 34 (42)
T PF09723_consen 10 ECGHEFEVLQSISE-DDPVPCPECGS 34 (42)
T ss_pred CCCCEEEEEEEcCC-CCCCcCCCCCC
Confidence 37877765321110 12456999987
No 189
>PRK01844 hypothetical protein; Provisional
Probab=59.70 E-value=15 Score=21.52 Aligned_cols=32 Identities=6% Similarity=0.039 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q 038049 8 VIVAAMLCALVCALGLHSMLQCVFQCTQRALT 39 (141)
Q Consensus 8 ~i~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 39 (141)
+.+.+++.++.+++|++.-++.-.+...++..
T Consensus 3 ~~~~I~l~I~~li~G~~~Gff~ark~~~k~lk 34 (72)
T PRK01844 3 IWLGILVGVVALVAGVALGFFIARKYMMNYLQ 34 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666555554444433
No 190
>TIGR01195 oadG_fam sodium pump decarboxylases, gamma subunit. Most sequences scoring between the noise and trusted cutoffs are eukaryotic sodium channel proteins.
Probab=59.29 E-value=34 Score=20.49 Aligned_cols=30 Identities=13% Similarity=0.000 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 038049 8 VIVAAMLCALVCALGLHSMLQCVFQCTQRA 37 (141)
Q Consensus 8 ~i~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 37 (141)
+.+..+.+++++++++...+..+.+...+.
T Consensus 10 l~v~GM~~VF~fL~lLi~~i~~~~~~~~~~ 39 (82)
T TIGR01195 10 LTVLGMGIVFLFLSLLIYAVRGMGKVVGRK 39 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334444444444444444444455544444
No 191
>PF07406 NICE-3: NICE-3 protein; InterPro: IPR010876 This family consists of several eukaryotic NICE-3 and related proteins. The gene coding for NICE-3 is part of the epidermal differentiation complex (EDC), which comprises a large number of genes that are of crucial importance for the maturation of the human epidermis []. The function of NICE-3 is unknown.
Probab=59.27 E-value=7.4 Score=27.21 Aligned_cols=17 Identities=29% Similarity=0.417 Sum_probs=9.9
Q ss_pred ccHhhHHHHH--cCCCccc
Q 038049 104 FHVACIDKWL--LSHSSCP 120 (141)
Q Consensus 104 Fh~~Ci~~wl--~~~~~CP 120 (141)
...+-+..|| .++..+|
T Consensus 124 ~~G~~~R~~L~~Lr~~~~p 142 (186)
T PF07406_consen 124 LPGENFRSYLLDLRNSSTP 142 (186)
T ss_pred cccccHHHHHHHHHhccCC
Confidence 4456677887 3444444
No 192
>PLN02436 cellulose synthase A
Probab=59.26 E-value=13 Score=32.93 Aligned_cols=50 Identities=22% Similarity=0.506 Sum_probs=32.7
Q ss_pred CcccccccccccccC--Cceeec-CCCCCcccHhhHHHHHc--CCCcccccccccc
Q 038049 77 ASAGCAICLLDFIDG--DEIRLL-PKCNHRFHVACIDKWLL--SHSSCPTCRQRLK 127 (141)
Q Consensus 77 ~~~~C~ICl~~~~~~--~~v~~l-p~C~H~Fh~~Ci~~wl~--~~~~CP~CR~~~~ 127 (141)
+...|-||-|+.... .++.+. ..|+--.|..|. ++=+ .++.||.|++...
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cy-eyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCY-EYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchh-hhhhhcCCccCcccCCchh
Confidence 345799999987432 223322 125555899998 4432 3577999999886
No 193
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=59.08 E-value=11 Score=23.80 Aligned_cols=24 Identities=25% Similarity=0.638 Sum_probs=18.2
Q ss_pred CCcccHhhHHHHHcC---------CCccccccc
Q 038049 101 NHRFHVACIDKWLLS---------HSSCPTCRQ 124 (141)
Q Consensus 101 ~H~Fh~~Ci~~wl~~---------~~~CP~CR~ 124 (141)
.=.|+.+||..+... +-.||.||.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 666999999988743 224999987
No 194
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=58.99 E-value=7.3 Score=26.22 Aligned_cols=17 Identities=29% Similarity=0.481 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHhcccc
Q 038049 21 LGLHSMLQCVFQCTQRA 37 (141)
Q Consensus 21 l~~~~~~~~~~~~~~~~ 37 (141)
+.++.-+.++++|.++.
T Consensus 21 lLl~cgiGcvwhwkhr~ 37 (158)
T PF11770_consen 21 LLLLCGIGCVWHWKHRD 37 (158)
T ss_pred HHHHHhcceEEEeeccC
Confidence 34444455555655554
No 195
>PHA03049 IMV membrane protein; Provisional
Probab=58.59 E-value=33 Score=19.71 Aligned_cols=10 Identities=0% Similarity=0.295 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 038049 23 LHSMLQCVFQ 32 (141)
Q Consensus 23 ~~~~~~~~~~ 32 (141)
+.++++.++.
T Consensus 15 i~lIvYgiYn 24 (68)
T PHA03049 15 IGLIVYGIYN 24 (68)
T ss_pred HHHHHHHHHh
Confidence 3333333433
No 196
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.54 E-value=5.1 Score=26.48 Aligned_cols=24 Identities=38% Similarity=0.816 Sum_probs=15.9
Q ss_pred CCCCcccccccc-cccccCCceeecCCCCCccc
Q 038049 74 PSSASAGCAICL-LDFIDGDEIRLLPKCNHRFH 105 (141)
Q Consensus 74 ~~~~~~~C~ICl-~~~~~~~~v~~lp~C~H~Fh 105 (141)
...++.+|-||+ ..|.++ |||.-|
T Consensus 61 Gv~ddatC~IC~KTKFADG--------~GH~C~ 85 (169)
T KOG3799|consen 61 GVGDDATCGICHKTKFADG--------CGHNCS 85 (169)
T ss_pred ccCcCcchhhhhhcccccc--------cCcccc
Confidence 346678999998 345444 777644
No 197
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=58.52 E-value=27 Score=22.45 Aligned_cols=28 Identities=11% Similarity=0.163 Sum_probs=20.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038049 5 NIMVIVAAMLCALVCALGLHSMLQCVFQ 32 (141)
Q Consensus 5 ~~~~i~~~~l~~~~~~l~~~~~~~~~~~ 32 (141)
..+|.+.|+.++++..+|+.++.+.++.
T Consensus 9 ~a~Ia~mVlGFi~fWPlGla~Lay~iw~ 36 (115)
T PF11014_consen 9 PAWIAAMVLGFIVFWPLGLALLAYMIWG 36 (115)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777888888888888766554
No 198
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=58.09 E-value=5.1 Score=30.32 Aligned_cols=47 Identities=15% Similarity=0.387 Sum_probs=28.4
Q ss_pred CcccccccccccccCCceee-cC-CCCCcccHhhHHHHHcCCCccccccc
Q 038049 77 ASAGCAICLLDFIDGDEIRL-LP-KCNHRFHVACIDKWLLSHSSCPTCRQ 124 (141)
Q Consensus 77 ~~~~C~ICl~~~~~~~~v~~-lp-~C~H~Fh~~Ci~~wl~~~~~CP~CR~ 124 (141)
....|++|-..-... .++. .. +=.|..|.-|=.+|-.....||.|-.
T Consensus 186 ~~~~CPvCGs~P~~s-~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSS-VVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhh-eeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 457899998663211 0111 01 11245667777888777788999975
No 199
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=57.84 E-value=5.7 Score=29.65 Aligned_cols=39 Identities=15% Similarity=0.339 Sum_probs=29.3
Q ss_pred cccccccccccccCCceeecCCCCCcccHhhHHHHHcCC
Q 038049 78 SAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSH 116 (141)
Q Consensus 78 ~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~ 116 (141)
-..|.+|.|.+++..-|..-.-=+|.||.-|=++-++.+
T Consensus 268 pLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Q 306 (352)
T KOG3579|consen 268 PLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQ 306 (352)
T ss_pred ceeehhhhhhhccCceeecCCCcccceecccCHHHHHhh
Confidence 467999999998876554222236999999999988764
No 200
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=57.37 E-value=18 Score=27.30 Aligned_cols=6 Identities=17% Similarity=0.362 Sum_probs=2.2
Q ss_pred HHHHHH
Q 038049 23 LHSMLQ 28 (141)
Q Consensus 23 ~~~~~~ 28 (141)
+.++++
T Consensus 275 IYLILR 280 (299)
T PF02009_consen 275 IYLILR 280 (299)
T ss_pred HHHHHH
Confidence 333333
No 201
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=56.54 E-value=1.4 Score=32.77 Aligned_cols=48 Identities=17% Similarity=0.307 Sum_probs=19.6
Q ss_pred CcccccccccccccCCceeecC--CCCCcccHhhHHHHHcCCCcccccccc
Q 038049 77 ASAGCAICLLDFIDGDEIRLLP--KCNHRFHVACIDKWLLSHSSCPTCRQR 125 (141)
Q Consensus 77 ~~~~C~ICl~~~~~~~~v~~lp--~C~H~Fh~~Ci~~wl~~~~~CP~CR~~ 125 (141)
....|++|-..-.-. .++... +=.|.+|.-|=.+|--....||.|-..
T Consensus 171 ~~g~CPvCGs~P~~s-~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 171 QRGYCPVCGSPPVLS-VLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNT 220 (290)
T ss_dssp T-SS-TTT---EEEE-EEE------EEEEEETTT--EEE--TTS-TTT---
T ss_pred cCCcCCCCCCcCceE-EEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCC
Confidence 347899998653221 011110 123557778888886677789999664
No 202
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=56.17 E-value=1.6 Score=27.81 Aligned_cols=21 Identities=19% Similarity=0.439 Sum_probs=0.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcc
Q 038049 15 CALVCALGLHSMLQCVFQCTQ 35 (141)
Q Consensus 15 ~~~~~~l~~~~~~~~~~~~~~ 35 (141)
.+++++|++++++.|++.++|
T Consensus 30 GiL~VILgiLLliGCWYckRR 50 (118)
T PF14991_consen 30 GILIVILGILLLIGCWYCKRR 50 (118)
T ss_dssp S--------------------
T ss_pred eeHHHHHHHHHHHhheeeeec
Confidence 344555666666654444333
No 203
>COG3630 OadG Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, gamma subunit [Energy production and conversion]
Probab=55.98 E-value=38 Score=20.47 Aligned_cols=31 Identities=13% Similarity=0.028 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 038049 7 MVIVAAMLCALVCALGLHSMLQCVFQCTQRA 37 (141)
Q Consensus 7 ~~i~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 37 (141)
.+.+..+.+++++..++...++++..-.+|+
T Consensus 12 ~L~vlGmg~VflfL~iLi~~~~~m~~~v~r~ 42 (84)
T COG3630 12 TLMVLGMGFVFLFLSILIYAMRGMGAVVRRF 42 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445555555555555556666666655554
No 204
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=55.91 E-value=23 Score=19.60 Aligned_cols=10 Identities=20% Similarity=0.152 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 038049 18 VCALGLHSML 27 (141)
Q Consensus 18 ~~~l~~~~~~ 27 (141)
.++++-++++
T Consensus 14 gvIigNia~L 23 (55)
T PF11446_consen 14 GVIIGNIAAL 23 (55)
T ss_pred HHHHhHHHHH
Confidence 3334444444
No 205
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=55.53 E-value=3.4 Score=30.89 Aligned_cols=37 Identities=24% Similarity=0.468 Sum_probs=29.6
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHHHcCC
Q 038049 79 AGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSH 116 (141)
Q Consensus 79 ~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~ 116 (141)
..|.+|+++|..+.....+. |.-+||..|+-.|+.+.
T Consensus 215 rvC~~CF~el~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 251 (288)
T KOG1729|consen 215 RVCDICFEELEKGARGDRED-SLPVFHGKCYPNWLTTG 251 (288)
T ss_pred eecHHHHHHHhcccccchhh-ccccccccccccccccc
Confidence 48999999998765555554 66699999999998764
No 206
>COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]
Probab=54.96 E-value=5.7 Score=26.39 Aligned_cols=21 Identities=24% Similarity=0.722 Sum_probs=16.7
Q ss_pred CCCCCcccHhhHHHHHcCCCccccccccc
Q 038049 98 PKCNHRFHVACIDKWLLSHSSCPTCRQRL 126 (141)
Q Consensus 98 p~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~ 126 (141)
++|||+|+. -+..||.|.++-
T Consensus 33 ~~CG~v~~P--------Pr~~Cp~C~~~~ 53 (140)
T COG1545 33 KKCGRVYFP--------PRAYCPKCGSET 53 (140)
T ss_pred CCCCeEEcC--------CcccCCCCCCCC
Confidence 359999887 567799998874
No 207
>COG4357 Zinc finger domain containing protein (CHY type) [Function unknown]
Probab=54.61 E-value=9.6 Score=23.65 Aligned_cols=29 Identities=21% Similarity=0.550 Sum_probs=20.3
Q ss_pred CCCcccHhhHHHHHcCCCccccccccccCC
Q 038049 100 CNHRFHVACIDKWLLSHSSCPTCRQRLKPS 129 (141)
Q Consensus 100 C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~ 129 (141)
||+.-|.-=+.++.. ..+||.|+.++.+.
T Consensus 65 CGvC~~~LT~~EY~~-~~~Cp~C~spFNp~ 93 (105)
T COG4357 65 CGVCRKLLTRAEYGM-CGSCPYCQSPFNPG 93 (105)
T ss_pred hhhhhhhhhHHHHhh-cCCCCCcCCCCCcc
Confidence 777777666666643 34599999988654
No 208
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=54.39 E-value=14 Score=21.04 Aligned_cols=28 Identities=14% Similarity=0.174 Sum_probs=13.9
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038049 3 DLNIMVIVAAMLCALVCALGLHSMLQCV 30 (141)
Q Consensus 3 ~~~~~~i~~~~l~~~~~~l~~~~~~~~~ 30 (141)
+.-.++++.+.-..++++++.+.++.|.
T Consensus 11 nPGlIVLlvV~g~ll~flvGnyvlY~Ya 38 (69)
T PF04689_consen 11 NPGLIVLLVVAGLLLVFLVGNYVLYVYA 38 (69)
T ss_pred CCCeEEeehHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555443
No 209
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=54.22 E-value=10 Score=24.30 Aligned_cols=46 Identities=22% Similarity=0.330 Sum_probs=27.8
Q ss_pred CCcccccccccccccC--CceeecCCCCCcccHhhHHHHHcCCC---ccccccc
Q 038049 76 SASAGCAICLLDFIDG--DEIRLLPKCNHRFHVACIDKWLLSHS---SCPTCRQ 124 (141)
Q Consensus 76 ~~~~~C~ICl~~~~~~--~~v~~lp~C~H~Fh~~Ci~~wl~~~~---~CP~CR~ 124 (141)
.++..|.+|..+|.-- ....-. .|+|.+|..|-.. ..+. .|-+|.+
T Consensus 52 ~~~~~C~~C~~~fg~l~~~~~~C~-~C~~~VC~~C~~~--~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 52 YGERHCARCGKPFGFLFNRGRVCV-DCKHRVCKKCGVY--SKKEPIWLCKVCQK 102 (118)
T ss_dssp HCCSB-TTTS-BCSCTSTTCEEET-TTTEEEETTSEEE--TSSSCCEEEHHHHH
T ss_pred cCCcchhhhCCcccccCCCCCcCC-cCCccccCccCCc--CCCCCCEEChhhHH
Confidence 3557899999876432 233334 4999999999655 2222 2777765
No 210
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.59 E-value=6.5 Score=24.11 Aligned_cols=12 Identities=25% Similarity=0.866 Sum_probs=10.7
Q ss_pred ccHhhHHHHHcC
Q 038049 104 FHVACIDKWLLS 115 (141)
Q Consensus 104 Fh~~Ci~~wl~~ 115 (141)
||..|+..|...
T Consensus 43 FCRNCLs~Wy~e 54 (104)
T COG3492 43 FCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHH
Confidence 999999999863
No 211
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.59 E-value=4.1 Score=32.30 Aligned_cols=38 Identities=16% Similarity=0.379 Sum_probs=27.5
Q ss_pred cccccccccccccCCcee----ecCCCCCcccHhhHHHHHcC
Q 038049 78 SAGCAICLLDFIDGDEIR----LLPKCNHRFHVACIDKWLLS 115 (141)
Q Consensus 78 ~~~C~ICl~~~~~~~~v~----~lp~C~H~Fh~~Ci~~wl~~ 115 (141)
...||.|....+.+...- ..+.|.|.||+.|+..|-..
T Consensus 226 tk~CP~c~~~iek~~gc~~~~~~~~~c~~~FCw~Cl~~~~~h 267 (444)
T KOG1815|consen 226 TKECPKCKVPIEKDGGCNHMTCKSASCKHEFCWVCLASLSDH 267 (444)
T ss_pred CccCCCcccchhccCCccccccccCCcCCeeceeeecccccc
Confidence 345999998887765321 11139999999999999655
No 212
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=53.48 E-value=5.1 Score=27.54 Aligned_cols=20 Identities=5% Similarity=0.238 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 038049 9 IVAAMLCALVCALGLHSMLQ 28 (141)
Q Consensus 9 i~~~~l~~~~~~l~~~~~~~ 28 (141)
.+++++.+++++++++.++.
T Consensus 77 ~~~iivgvi~~Vi~Iv~~Iv 96 (179)
T PF13908_consen 77 ITGIIVGVICGVIAIVVLIV 96 (179)
T ss_pred eeeeeeehhhHHHHHHHhHh
Confidence 33444444444444443333
No 213
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=53.41 E-value=13 Score=27.56 Aligned_cols=17 Identities=35% Similarity=0.978 Sum_probs=14.1
Q ss_pred ccHhhHHHH-HcCCCccc
Q 038049 104 FHVACIDKW-LLSHSSCP 120 (141)
Q Consensus 104 Fh~~Ci~~w-l~~~~~CP 120 (141)
=|.+|++.| +.-++.||
T Consensus 57 GHrdCFEK~HlIanQ~~p 74 (285)
T PF06937_consen 57 GHRDCFEKYHLIANQDCP 74 (285)
T ss_pred chHHHHHHHHHHHcCCCC
Confidence 589999999 55678888
No 214
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=53.31 E-value=13 Score=23.38 Aligned_cols=34 Identities=21% Similarity=0.335 Sum_probs=26.9
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHHHc
Q 038049 79 AGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLL 114 (141)
Q Consensus 79 ~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~ 114 (141)
-.|.||-+++..++.-..+.+ -.-|..|+..=..
T Consensus 3 WkC~iCg~~I~~gqlFTF~~k--G~VH~~C~~~~~~ 36 (101)
T PF09943_consen 3 WKCYICGKPIYEGQLFTFTKK--GPVHYECFREKAS 36 (101)
T ss_pred eEEEecCCeeeecceEEEecC--CcEeHHHHHHHHh
Confidence 369999999999887766653 5589999988654
No 215
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=52.88 E-value=21 Score=31.49 Aligned_cols=51 Identities=18% Similarity=0.386 Sum_probs=32.8
Q ss_pred CcccccccccccccCC--ceeec-CCCCCcccHhhHHHHHc-CCCcccccccccc
Q 038049 77 ASAGCAICLLDFIDGD--EIRLL-PKCNHRFHVACIDKWLL-SHSSCPTCRQRLK 127 (141)
Q Consensus 77 ~~~~C~ICl~~~~~~~--~v~~l-p~C~H~Fh~~Ci~~wl~-~~~~CP~CR~~~~ 127 (141)
+...|-||-|+..... ++.+. ..|+--.|..|.+-=.+ .++.||.|++...
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 4467999998875432 22221 12555589999943222 3577999999886
No 216
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=52.44 E-value=7.1 Score=31.97 Aligned_cols=36 Identities=28% Similarity=0.493 Sum_probs=25.2
Q ss_pred CCccccccccccccc-----------CCceeecCCCCCcccHhhHHHHH
Q 038049 76 SASAGCAICLLDFID-----------GDEIRLLPKCNHRFHVACIDKWL 113 (141)
Q Consensus 76 ~~~~~C~ICl~~~~~-----------~~~v~~lp~C~H~Fh~~Ci~~wl 113 (141)
+....|+||.|.|+. .+.|.+. =|-+||..|+.+--
T Consensus 511 e~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~le--~G~ifH~~Cl~e~~ 557 (579)
T KOG2071|consen 511 ERQASCPICQEKFEVVFDQEEDLWMYKDAVYLE--FGRIFHSKCLSEKR 557 (579)
T ss_pred ccccCCcccccccceeecchhhheeecceeeec--cCceeeccccchHH
Confidence 445679999999853 1223332 48899999998753
No 217
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=52.25 E-value=8.9 Score=20.89 Aligned_cols=23 Identities=26% Similarity=0.800 Sum_probs=12.0
Q ss_pred CCCCcccHhhHHHHHcCCCccccc
Q 038049 99 KCNHRFHVACIDKWLLSHSSCPTC 122 (141)
Q Consensus 99 ~C~H~Fh~~Ci~~wl~~~~~CP~C 122 (141)
.|||.|-.. +..-......||.|
T Consensus 33 ~Cgh~w~~~-v~~R~~~~~~CP~C 55 (55)
T PF14311_consen 33 KCGHEWKAS-VNDRTRRGKGCPYC 55 (55)
T ss_pred CCCCeeEcc-HhhhccCCCCCCCC
Confidence 366655442 22222456678887
No 218
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=51.72 E-value=1.5 Score=20.32 Aligned_cols=9 Identities=33% Similarity=1.158 Sum_probs=5.8
Q ss_pred ccccccccc
Q 038049 118 SCPTCRQRL 126 (141)
Q Consensus 118 ~CP~CR~~~ 126 (141)
.||+|.+.+
T Consensus 3 ~CPiC~~~v 11 (26)
T smart00734 3 QCPVCFREV 11 (26)
T ss_pred cCCCCcCcc
Confidence 477776655
No 219
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=51.56 E-value=20 Score=31.75 Aligned_cols=49 Identities=22% Similarity=0.446 Sum_probs=32.1
Q ss_pred cccccccccccccCC--ceeec-CCCCCcccHhhHHHHH--cCCCcccccccccc
Q 038049 78 SAGCAICLLDFIDGD--EIRLL-PKCNHRFHVACIDKWL--LSHSSCPTCRQRLK 127 (141)
Q Consensus 78 ~~~C~ICl~~~~~~~--~v~~l-p~C~H~Fh~~Ci~~wl--~~~~~CP~CR~~~~ 127 (141)
...|-||-|+..... ++.+. ..|+-=-|..|. ++= +.++.||.|++...
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCY-EYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCY-EYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchh-hhhhhcCCccCCccCCchh
Confidence 357999998875432 23222 125555899998 432 23678999999886
No 220
>PTZ00370 STEVOR; Provisional
Probab=50.71 E-value=28 Score=26.15 Aligned_cols=26 Identities=0% Similarity=-0.109 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccc
Q 038049 13 MLCALVCALGLHSMLQCVFQCTQRAL 38 (141)
Q Consensus 13 ~l~~~~~~l~~~~~~~~~~~~~~~~~ 38 (141)
++.+++.++.+++.++...|+.+.|.
T Consensus 262 lvllil~vvliilYiwlyrrRK~swk 287 (296)
T PTZ00370 262 LVLLILAVVLIILYIWLYRRRKNSWK 287 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchhH
Confidence 33334444444455556666555443
No 221
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=50.25 E-value=14 Score=19.97 Aligned_cols=10 Identities=30% Similarity=0.816 Sum_probs=7.3
Q ss_pred CCcccccccc
Q 038049 116 HSSCPTCRQR 125 (141)
Q Consensus 116 ~~~CP~CR~~ 125 (141)
.-.||+|.++
T Consensus 34 ~w~CP~C~a~ 43 (50)
T cd00730 34 DWVCPVCGAG 43 (50)
T ss_pred CCCCCCCCCc
Confidence 4579999764
No 222
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=49.89 E-value=13 Score=23.23 Aligned_cols=33 Identities=33% Similarity=0.671 Sum_probs=21.5
Q ss_pred cccccccccccccCCceee-cCCCCCcccHhhHHHH
Q 038049 78 SAGCAICLLDFIDGDEIRL-LPKCNHRFHVACIDKW 112 (141)
Q Consensus 78 ~~~C~ICl~~~~~~~~v~~-lp~C~H~Fh~~Ci~~w 112 (141)
...|.||... .+..+.- -+.|...||..|....
T Consensus 55 ~~~C~iC~~~--~G~~i~C~~~~C~~~fH~~CA~~~ 88 (110)
T PF13832_consen 55 KLKCSICGKS--GGACIKCSHPGCSTAFHPTCARKA 88 (110)
T ss_pred CCcCcCCCCC--CceeEEcCCCCCCcCCCHHHHHHC
Confidence 4679999876 2322221 1138889999998663
No 223
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=49.72 E-value=9.2 Score=21.51 Aligned_cols=17 Identities=29% Similarity=0.991 Sum_probs=12.0
Q ss_pred CCCccccccccccCCCC
Q 038049 115 SHSSCPTCRQRLKPSDA 131 (141)
Q Consensus 115 ~~~~CP~CR~~~~~~~~ 131 (141)
.++-||+|..+++.++.
T Consensus 2 ~HkHC~~CG~~Ip~~~~ 18 (59)
T PF09889_consen 2 PHKHCPVCGKPIPPDES 18 (59)
T ss_pred CCCcCCcCCCcCCcchh
Confidence 35678888888876543
No 224
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=49.45 E-value=37 Score=22.84 Aligned_cols=13 Identities=15% Similarity=0.521 Sum_probs=5.7
Q ss_pred CCccHHHHHHHHH
Q 038049 2 ADLNIMVIVAAML 14 (141)
Q Consensus 2 ~~~~~~~i~~~~l 14 (141)
|+.+++++++.++
T Consensus 4 ~~~~~~~~~~~~i 16 (164)
T PRK14473 4 LGINLGLLIAQLI 16 (164)
T ss_pred ccCcHHHHHHHHH
Confidence 3455544443333
No 225
>PF05510 Sarcoglycan_2: Sarcoglycan alpha/epsilon; InterPro: IPR008908 Sarcoglycans are a subcomplex of transmembrane proteins which are part of the dystrophin-glycoprotein complex. They are expressed in the skeletal, cardiac and smooth muscle. Although numerous studies have been conducted on the sarcoglycan subcomplex in skeletal and cardiac muscle, the manner of the distribution and localisation of these proteins along the nonjunctional sarcolemma is not clear []. This family contains alpha and epsilon members.; GO: 0016012 sarcoglycan complex
Probab=49.03 E-value=17 Score=28.40 Aligned_cols=29 Identities=24% Similarity=0.206 Sum_probs=13.5
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038049 2 ADLNIMVIVAAMLCALVCALGLHSMLQCV 30 (141)
Q Consensus 2 ~~~~~~~i~~~~l~~~~~~l~~~~~~~~~ 30 (141)
|..++.+.+++-+++++++++++.++.|+
T Consensus 281 y~~d~~vtl~iPl~i~llL~llLs~Imc~ 309 (386)
T PF05510_consen 281 YFPDFLVTLAIPLIIALLLLLLLSYIMCC 309 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhee
Confidence 44455555555544444444444444333
No 226
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=48.71 E-value=11 Score=22.48 Aligned_cols=31 Identities=39% Similarity=0.746 Sum_probs=21.0
Q ss_pred ccccccccccccCCceee-cCCCCCcccHhhHHH
Q 038049 79 AGCAICLLDFIDGDEIRL-LPKCNHRFHVACIDK 111 (141)
Q Consensus 79 ~~C~ICl~~~~~~~~v~~-lp~C~H~Fh~~Ci~~ 111 (141)
..|.+|-... +..+.- .+.|.-.||..|-..
T Consensus 37 ~~C~~C~~~~--Ga~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 37 LKCSICKKKG--GACIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred CCCcCCCCCC--CeEEEEeCCCCCcEEChHHHcc
Confidence 5799998652 333321 224999999999765
No 227
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=48.22 E-value=13 Score=27.26 Aligned_cols=24 Identities=25% Similarity=0.591 Sum_probs=17.6
Q ss_pred cccccccccccCCceeecCCCCCcc
Q 038049 80 GCAICLLDFIDGDEIRLLPKCNHRF 104 (141)
Q Consensus 80 ~C~ICl~~~~~~~~v~~lp~C~H~F 104 (141)
.||+|...+...+.--..+ .||.|
T Consensus 4 ~CP~C~~~l~~~~~~~~C~-~~h~f 27 (272)
T PRK11088 4 QCPLCHQPLTLEENSWICP-QNHQF 27 (272)
T ss_pred cCCCCCcchhcCCCEEEcC-CCCCC
Confidence 5999999997655544444 68988
No 228
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=47.40 E-value=18 Score=27.62 Aligned_cols=33 Identities=18% Similarity=0.458 Sum_probs=25.1
Q ss_pred CcccccccccccccCCceeecCCCC--CcccHhhHHHHH
Q 038049 77 ASAGCAICLLDFIDGDEIRLLPKCN--HRFHVACIDKWL 113 (141)
Q Consensus 77 ~~~~C~ICl~~~~~~~~v~~lp~C~--H~Fh~~Ci~~wl 113 (141)
...+|..|-+. .+.|-..+ |+ |+-+.+|+..+-
T Consensus 220 ~ni~C~~Ctdv---~~~vlvf~-Cns~HvtC~dCFr~yc 254 (446)
T KOG0006|consen 220 RNITCITCTDV---RSPVLVFQ-CNSRHVTCLDCFRLYC 254 (446)
T ss_pred ccceeEEecCC---ccceEEEe-cCCceeehHHhhhhHh
Confidence 34678888754 55667787 99 999999998753
No 229
>PHA02849 putative transmembrane protein; Provisional
Probab=47.25 E-value=61 Score=19.32 Aligned_cols=13 Identities=8% Similarity=0.281 Sum_probs=5.2
Q ss_pred CCccHHHHHHHHH
Q 038049 2 ADLNIMVIVAAML 14 (141)
Q Consensus 2 ~~~~~~~i~~~~l 14 (141)
|+...+.++.+++
T Consensus 12 f~~g~v~vi~v~v 24 (82)
T PHA02849 12 FDAGAVTVILVFV 24 (82)
T ss_pred cccchHHHHHHHH
Confidence 4444444443333
No 230
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=47.00 E-value=60 Score=19.19 Aligned_cols=8 Identities=13% Similarity=0.214 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 038049 23 LHSMLQCV 30 (141)
Q Consensus 23 ~~~~~~~~ 30 (141)
+.+++.|.
T Consensus 20 ~WL~lHY~ 27 (75)
T PF06667_consen 20 IWLILHYR 27 (75)
T ss_pred HHHHHHHH
Confidence 33333333
No 231
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=46.99 E-value=51 Score=20.14 Aligned_cols=6 Identities=17% Similarity=0.429 Sum_probs=2.2
Q ss_pred HHHHHH
Q 038049 26 MLQCVF 31 (141)
Q Consensus 26 ~~~~~~ 31 (141)
.+.|+.
T Consensus 51 wfvCC~ 56 (94)
T PF05393_consen 51 WFVCCK 56 (94)
T ss_pred HHHHHH
Confidence 333333
No 232
>COG0675 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=46.95 E-value=19 Score=26.65 Aligned_cols=35 Identities=14% Similarity=0.194 Sum_probs=22.3
Q ss_pred CCCcccccccccccccCCceeecCCCCCcccHhhHHHH
Q 038049 75 SSASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKW 112 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~w 112 (141)
...+.+|+.|-. .....-..|.||+.+|.|=.-.+
T Consensus 306 ~~tS~~C~~cg~---~~~r~~~C~~cg~~~~rD~naa~ 340 (364)
T COG0675 306 YYTSKTCPCCGH---LSGRLFKCPRCGFVHDRDVNAAL 340 (364)
T ss_pred CCCcccccccCC---ccceeEECCCCCCeehhhHHHHH
Confidence 344577999987 22233345569999998754443
No 233
>PLN02400 cellulose synthase
Probab=46.76 E-value=23 Score=31.46 Aligned_cols=50 Identities=20% Similarity=0.516 Sum_probs=32.3
Q ss_pred CcccccccccccccCC--ceeec-CCCCCcccHhhHHHHHc--CCCcccccccccc
Q 038049 77 ASAGCAICLLDFIDGD--EIRLL-PKCNHRFHVACIDKWLL--SHSSCPTCRQRLK 127 (141)
Q Consensus 77 ~~~~C~ICl~~~~~~~--~v~~l-p~C~H~Fh~~Ci~~wl~--~~~~CP~CR~~~~ 127 (141)
+...|-||-|+..... ++.+. ..|+-=-|..|.+ +=+ .++.||.|+....
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYE-YERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYE-YERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhh-eecccCCccCcccCCccc
Confidence 3457999998875432 23322 1255558999984 322 3578999999886
No 234
>PF15353 HECA: Headcase protein family homologue
Probab=46.66 E-value=13 Score=23.54 Aligned_cols=14 Identities=29% Similarity=0.819 Sum_probs=12.3
Q ss_pred CCCcccHhhHHHHH
Q 038049 100 CNHRFHVACIDKWL 113 (141)
Q Consensus 100 C~H~Fh~~Ci~~wl 113 (141)
.|+..|.+|++.|=
T Consensus 40 ~~~~MH~~CF~~wE 53 (107)
T PF15353_consen 40 FGQYMHRECFEKWE 53 (107)
T ss_pred CCCchHHHHHHHHH
Confidence 57889999999993
No 235
>PTZ00208 65 kDa invariant surface glycoprotein; Provisional
Probab=45.87 E-value=14 Score=29.04 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 038049 6 IMVIVAAMLCALVCALGLHSM 26 (141)
Q Consensus 6 ~~~i~~~~l~~~~~~l~~~~~ 26 (141)
-+|++++++.++++++..+.+
T Consensus 386 ~~i~~avl~p~~il~~~~~~~ 406 (436)
T PTZ00208 386 AMIILAVLVPAIILAIIAVAF 406 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 466777777777666444333
No 236
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=45.85 E-value=40 Score=24.72 Aligned_cols=10 Identities=20% Similarity=0.650 Sum_probs=6.3
Q ss_pred HHHHHcCCCc
Q 038049 109 IDKWLLSHSS 118 (141)
Q Consensus 109 i~~wl~~~~~ 118 (141)
.+.|+...+.
T Consensus 216 f~~W~~~~~~ 225 (247)
T COG1622 216 FDAWVAEVKA 225 (247)
T ss_pred HHHHHHhhhh
Confidence 7788764433
No 237
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=45.58 E-value=45 Score=21.75 Aligned_cols=19 Identities=5% Similarity=0.057 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 038049 15 CALVCALGLHSMLQCVFQC 33 (141)
Q Consensus 15 ~~~~~~l~~~~~~~~~~~~ 33 (141)
.+++++|+++++.+-+...
T Consensus 43 s~vvlvi~~~LLgrsi~AN 61 (125)
T PF15048_consen 43 SFVVLVISFFLLGRSIQAN 61 (125)
T ss_pred HHHHHHHHHHHHHHHhHhc
Confidence 3333444444444444433
No 238
>PF05715 zf-piccolo: Piccolo Zn-finger; InterPro: IPR008899 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This (predicted) zinc finger is found in the bassoon and piccolo proteins, both of which are components of the presynaptic cytoskeletal matrix (PCM) assembled at the active zone of neurotransmitter release, where Piccolo plays a role in the trafficking of synaptic vesicles (SVs) [, , ]. The Piccolo zinc fingers were found to interact with the dual prenylated rab3A and VAMP2/Synaptobrevin II receptor PRA1. There are eight conserved cysteines in Piccolo-type zinc fingers, suggesting that they coordinates two zinc ligands. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding, 0045202 synapse
Probab=45.08 E-value=17 Score=20.49 Aligned_cols=9 Identities=44% Similarity=1.246 Sum_probs=4.0
Q ss_pred ccccccccc
Q 038049 118 SCPTCRQRL 126 (141)
Q Consensus 118 ~CP~CR~~~ 126 (141)
.||+|+..+
T Consensus 4 ~CPlCkt~~ 12 (61)
T PF05715_consen 4 LCPLCKTTL 12 (61)
T ss_pred cCCcccchh
Confidence 344444433
No 239
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=45.07 E-value=16 Score=32.28 Aligned_cols=24 Identities=17% Similarity=0.151 Sum_probs=11.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Q 038049 5 NIMVIVAAMLCALVCALGLHSMLQ 28 (141)
Q Consensus 5 ~~~~i~~~~l~~~~~~l~~~~~~~ 28 (141)
.|++++++++.++++.+++++++.
T Consensus 978 ~wiIi~svl~GLLlL~llv~~LwK 1001 (1030)
T KOG3637|consen 978 LWIIILSVLGGLLLLALLVLLLWK 1001 (1030)
T ss_pred eeeehHHHHHHHHHHHHHHHHHHh
Confidence 344555555555554444444443
No 240
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=44.81 E-value=9.5 Score=21.30 Aligned_cols=16 Identities=25% Similarity=0.542 Sum_probs=7.5
Q ss_pred CccccccccccCCCCC
Q 038049 117 SSCPTCRQRLKPSDAM 132 (141)
Q Consensus 117 ~~CP~CR~~~~~~~~~ 132 (141)
..||.|++++.....+
T Consensus 3 v~CP~C~k~~~~~~~n 18 (57)
T PF03884_consen 3 VKCPICGKPVEWSPEN 18 (57)
T ss_dssp EE-TTT--EEE-SSSS
T ss_pred ccCCCCCCeecccCCC
Confidence 3588888877654433
No 241
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=44.67 E-value=18 Score=31.09 Aligned_cols=35 Identities=31% Similarity=0.528 Sum_probs=24.0
Q ss_pred ccccccccccccCCc---eee--cCCCCCcccHhhHHHHH
Q 038049 79 AGCAICLLDFIDGDE---IRL--LPKCNHRFHVACIDKWL 113 (141)
Q Consensus 79 ~~C~ICl~~~~~~~~---v~~--lp~C~H~Fh~~Ci~~wl 113 (141)
..|..|-..|..-.+ .|. .-.||.+||..|-....
T Consensus 461 dtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnRs 500 (1374)
T PTZ00303 461 DSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKRA 500 (1374)
T ss_pred CcccCcCCcccccccccccccccccCCccccCccccCCcc
Confidence 569999999953211 121 11499999999987654
No 242
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=44.61 E-value=15 Score=20.27 Aligned_cols=10 Identities=40% Similarity=1.039 Sum_probs=6.7
Q ss_pred Cccccccccc
Q 038049 117 SSCPTCRQRL 126 (141)
Q Consensus 117 ~~CP~CR~~~ 126 (141)
-.||-|++.-
T Consensus 29 lyCpKCK~Et 38 (55)
T PF14205_consen 29 LYCPKCKQET 38 (55)
T ss_pred ccCCCCCceE
Confidence 3488888754
No 243
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=43.92 E-value=9.9 Score=28.73 Aligned_cols=48 Identities=15% Similarity=0.325 Sum_probs=28.4
Q ss_pred CcccccccccccccCCceeec---CCCCCcccHhhHHHHHcCCCcccccccc
Q 038049 77 ASAGCAICLLDFIDGDEIRLL---PKCNHRFHVACIDKWLLSHSSCPTCRQR 125 (141)
Q Consensus 77 ~~~~C~ICl~~~~~~~~v~~l---p~C~H~Fh~~Ci~~wl~~~~~CP~CR~~ 125 (141)
+...|++|-+.-... .++.. .+=.|..|.-|=.+|-.....||.|-.+
T Consensus 183 ~~~~CPvCGs~P~~s-~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 183 SRTLCPACGSPPVAS-MVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CCCcCCCCCChhhhh-hhcccCCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 345899998663211 11110 0112446667778887777889999763
No 244
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=43.86 E-value=9.3 Score=25.73 Aligned_cols=32 Identities=13% Similarity=0.218 Sum_probs=18.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 038049 5 NIMVIVAAMLCALVCALGLHSMLQCVFQCTQR 36 (141)
Q Consensus 5 ~~~~i~~~~l~~~~~~l~~~~~~~~~~~~~~~ 36 (141)
.+.+.+++.+++++++.++..++.+-.+...+
T Consensus 9 sv~i~igi~Ll~lLl~cgiGcvwhwkhr~~~~ 40 (158)
T PF11770_consen 9 SVAISIGISLLLLLLLCGIGCVWHWKHRDSTR 40 (158)
T ss_pred hHHHHHHHHHHHHHHHHhcceEEEeeccCccc
Confidence 34555666666666666666666544444333
No 245
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=43.46 E-value=5.5 Score=29.81 Aligned_cols=42 Identities=21% Similarity=0.585 Sum_probs=30.2
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccCCC
Q 038049 79 AGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKPSD 130 (141)
Q Consensus 79 ~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~~ 130 (141)
..|+-|.+-+.+.+.||.. =.|+||.+|+. |-+|.+.+...+
T Consensus 93 TKCsaC~~GIpPtqVVRkA--qd~VYHl~CF~--------C~iC~R~L~TGd 134 (383)
T KOG4577|consen 93 TKCSACQEGIPPTQVVRKA--QDFVYHLHCFA--------CFICKRQLATGD 134 (383)
T ss_pred CcchhhcCCCChHHHHHHh--hcceeehhhhh--------hHhhhcccccCC
Confidence 5699998888777777765 68999999965 455655554443
No 246
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=43.37 E-value=15 Score=23.38 Aligned_cols=27 Identities=19% Similarity=0.480 Sum_probs=16.8
Q ss_pred ccccccccccccCC-ceeecCCCCCccc
Q 038049 79 AGCAICLLDFIDGD-EIRLLPKCNHRFH 105 (141)
Q Consensus 79 ~~C~ICl~~~~~~~-~v~~lp~C~H~Fh 105 (141)
..|+-|-.+|.-.+ ...+.|.|+|-+-
T Consensus 3 p~CP~C~seytY~dg~~~iCpeC~~EW~ 30 (109)
T TIGR00686 3 PPCPKCNSEYTYHDGTQLICPSCLYEWN 30 (109)
T ss_pred CcCCcCCCcceEecCCeeECcccccccc
Confidence 45899988886443 2345555777543
No 247
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=42.99 E-value=54 Score=23.83 Aligned_cols=22 Identities=18% Similarity=0.437 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 038049 7 MVIVAAMLCALVCALGLHSMLQ 28 (141)
Q Consensus 7 ~~i~~~~l~~~~~~l~~~~~~~ 28 (141)
-+++-+++.++++.+.++.++.
T Consensus 188 ~vilpvvIaliVitl~vf~Lvg 209 (259)
T PF07010_consen 188 SVILPVVIALIVITLSVFTLVG 209 (259)
T ss_pred chhHHHHHHHHHHHHHHHHHHH
Confidence 3344444444443443333333
No 248
>PRK02919 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=42.86 E-value=74 Score=19.10 Aligned_cols=28 Identities=14% Similarity=-0.015 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 038049 10 VAAMLCALVCALGLHSMLQCVFQCTQRA 37 (141)
Q Consensus 10 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 37 (141)
+.++..+++|+.+++..+.++.+...++
T Consensus 15 vlGMg~VfvFL~lLI~~i~~ms~l~~~~ 42 (82)
T PRK02919 15 FLGMGFVLAFLFLLIFAIRGMSALINRF 42 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444444445555555544444
No 249
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=42.55 E-value=9.8 Score=17.86 Aligned_cols=12 Identities=33% Similarity=0.988 Sum_probs=5.9
Q ss_pred ccccccccccCC
Q 038049 118 SCPTCRQRLKPS 129 (141)
Q Consensus 118 ~CP~CR~~~~~~ 129 (141)
.||.|.+.+...
T Consensus 1 ~CP~C~s~l~~~ 12 (28)
T PF03119_consen 1 TCPVCGSKLVRE 12 (28)
T ss_dssp B-TTT--BEEE-
T ss_pred CcCCCCCEeEcC
Confidence 489998888633
No 250
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=41.86 E-value=80 Score=19.72 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 038049 11 AAMLCALVCALGLHSMLQCVFQ 32 (141)
Q Consensus 11 ~~~l~~~~~~l~~~~~~~~~~~ 32 (141)
.+.+..+++..+++.-+.++.|
T Consensus 22 LItLasVvvavGl~aGLfFcvR 43 (106)
T PF14654_consen 22 LITLASVVVAVGLFAGLFFCVR 43 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444444444444444443
No 251
>PLN02248 cellulose synthase-like protein
Probab=41.79 E-value=24 Score=31.40 Aligned_cols=30 Identities=23% Similarity=0.562 Sum_probs=26.7
Q ss_pred CCCCcccHhhHHHHHcCCCccccccccccC
Q 038049 99 KCNHRFHVACIDKWLLSHSSCPTCRQRLKP 128 (141)
Q Consensus 99 ~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~ 128 (141)
.|++..|.+|...-++....||-|+.+...
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (1135)
T PLN02248 149 ECGFKICRDCYIDAVKSGGICPGCKEPYKV 178 (1135)
T ss_pred cccchhHHhHhhhhhhcCCCCCCCcccccc
Confidence 488999999999999999999999998843
No 252
>PF14979 TMEM52: Transmembrane 52
Probab=41.67 E-value=83 Score=21.21 Aligned_cols=33 Identities=15% Similarity=0.175 Sum_probs=16.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 038049 5 NIMVIVAAMLCALVCALGLHSMLQCVFQCTQRA 37 (141)
Q Consensus 5 ~~~~i~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 37 (141)
+.|.|+.+++.++++++--+...-..+-|.++.
T Consensus 18 ~LWyIwLill~~~llLLCG~ta~C~rfCClrk~ 50 (154)
T PF14979_consen 18 SLWYIWLILLIGFLLLLCGLTASCVRFCCLRKQ 50 (154)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 345666666555554444444332222445554
No 253
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=41.64 E-value=38 Score=22.79 Aligned_cols=8 Identities=25% Similarity=0.957 Sum_probs=4.1
Q ss_pred HHHHhccc
Q 038049 29 CVFQCTQR 36 (141)
Q Consensus 29 ~~~~~~~~ 36 (141)
.+.+|.+|
T Consensus 48 li~lcssR 55 (189)
T PF05568_consen 48 LIYLCSSR 55 (189)
T ss_pred HHHHHhhh
Confidence 35565544
No 254
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=40.98 E-value=24 Score=18.68 Aligned_cols=33 Identities=21% Similarity=0.397 Sum_probs=23.2
Q ss_pred ccccccccccc--ccCCceeecCCCCCcccHhhHHH
Q 038049 78 SAGCAICLLDF--IDGDEIRLLPKCNHRFHVACIDK 111 (141)
Q Consensus 78 ~~~C~ICl~~~--~~~~~v~~lp~C~H~Fh~~Ci~~ 111 (141)
...|.+|-+.+ ...+..+-.. |+=..|.+|++.
T Consensus 11 ~~~C~~C~~~i~g~~~~g~~C~~-C~~~~H~~C~~~ 45 (53)
T PF00130_consen 11 PTYCDVCGKFIWGLGKQGYRCSW-CGLVCHKKCLSK 45 (53)
T ss_dssp TEB-TTSSSBECSSSSCEEEETT-TT-EEETTGGCT
T ss_pred CCCCcccCcccCCCCCCeEEECC-CCChHhhhhhhh
Confidence 36799998888 3455566665 999999999764
No 255
>PRK01343 zinc-binding protein; Provisional
Probab=40.70 E-value=15 Score=20.50 Aligned_cols=12 Identities=25% Similarity=0.778 Sum_probs=9.4
Q ss_pred CCcccccccccc
Q 038049 116 HSSCPTCRQRLK 127 (141)
Q Consensus 116 ~~~CP~CR~~~~ 127 (141)
...||+|+++..
T Consensus 9 ~~~CP~C~k~~~ 20 (57)
T PRK01343 9 TRPCPECGKPST 20 (57)
T ss_pred CCcCCCCCCcCc
Confidence 456999999765
No 256
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=40.62 E-value=9.5 Score=20.86 Aligned_cols=10 Identities=30% Similarity=1.125 Sum_probs=3.8
Q ss_pred cccccccccc
Q 038049 118 SCPTCRQRLK 127 (141)
Q Consensus 118 ~CP~CR~~~~ 127 (141)
+||+|.+.+.
T Consensus 26 tCP~C~a~~~ 35 (54)
T PF09237_consen 26 TCPICGAVIR 35 (54)
T ss_dssp E-TTT--EES
T ss_pred CCCcchhhcc
Confidence 3666665543
No 257
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=40.27 E-value=8.8 Score=26.00 Aligned_cols=44 Identities=27% Similarity=0.575 Sum_probs=25.6
Q ss_pred ccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccCC
Q 038049 83 ICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKPS 129 (141)
Q Consensus 83 ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~ 129 (141)
||+.--...+..-.-|.=.+-||.+|-.+-+ ..||.|..++.-.
T Consensus 9 iC~NGH~~t~~~~~~p~~~~~fC~kCG~~tI---~~Cp~C~~~IrG~ 52 (158)
T PF10083_consen 9 ICLNGHVITDSYDKNPELREKFCSKCGAKTI---TSCPNCSTPIRGD 52 (158)
T ss_pred HccCccccccccccCchHHHHHHHHhhHHHH---HHCcCCCCCCCCc
Confidence 5664444444443443344668888866632 4588888877544
No 258
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=39.86 E-value=30 Score=26.39 Aligned_cols=63 Identities=16% Similarity=0.252 Sum_probs=38.4
Q ss_pred CCceeecCCCCCCCCCcccccccccccccCC----------ceeecCCCCCcccHhhHHHHHcCCCccccccc
Q 038049 62 LPTVTYANSGSSPSSASAGCAICLLDFIDGD----------EIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQ 124 (141)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~----------~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~ 124 (141)
+|...+.+.....+.....|-.|...|-... .-...+.|.-.||.+|=.---+.-..||.|..
T Consensus 346 ~PLk~f~E~p~~~~~ks~~Cf~CQ~~fp~~~~~~~~~~~ss~rY~Ce~CK~~FC~dCdvfiHe~Lh~C~gCe~ 418 (421)
T COG5151 346 YPLKPFVEKPEGTNPKSTHCFVCQGPFPKPPVSPFDESTSSGRYQCELCKSTFCSDCDVFIHETLHFCIGCEL 418 (421)
T ss_pred ccCcccccccCCCCCCCccceeccCCCCCCCCCcccccccccceechhhhhhhhhhhHHHHHHHHhhCCCCcC
Confidence 4555555544444455567999998774321 11223348888999996554445567999954
No 259
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=39.21 E-value=61 Score=18.79 Aligned_cols=12 Identities=0% Similarity=-0.014 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 038049 7 MVIVAAMLCALV 18 (141)
Q Consensus 7 ~~i~~~~l~~~~ 18 (141)
|..++++..+++
T Consensus 33 W~aIGvi~gi~~ 44 (68)
T PF04971_consen 33 WAAIGVIGGIFF 44 (68)
T ss_pred chhHHHHHHHHH
Confidence 333444433333
No 260
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=39.20 E-value=11 Score=18.07 Aligned_cols=26 Identities=27% Similarity=0.798 Sum_probs=9.1
Q ss_pred ccccccccccccCC-ceeecCCCCCcc
Q 038049 79 AGCAICLLDFIDGD-EIRLLPKCNHRF 104 (141)
Q Consensus 79 ~~C~ICl~~~~~~~-~v~~lp~C~H~F 104 (141)
..|+-|-.++.-.| .+.+-|.|+|.+
T Consensus 3 p~Cp~C~se~~y~D~~~~vCp~C~~ew 29 (30)
T PF08274_consen 3 PKCPLCGSEYTYEDGELLVCPECGHEW 29 (30)
T ss_dssp ---TTT-----EE-SSSEEETTTTEEE
T ss_pred CCCCCCCCcceeccCCEEeCCcccccC
Confidence 35777777664332 334445577643
No 261
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=39.10 E-value=83 Score=18.57 Aligned_cols=24 Identities=0% Similarity=0.016 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Q 038049 12 AMLCALVCALGLHSMLQCVFQCTQ 35 (141)
Q Consensus 12 ~~l~~~~~~l~~~~~~~~~~~~~~ 35 (141)
+++.++++++++..++.+..+..+
T Consensus 6 l~~Pliif~ifVap~wl~lHY~~k 29 (75)
T TIGR02976 6 LAIPLIIFVIFVAPLWLILHYRSK 29 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444444444333
No 262
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=38.70 E-value=11 Score=34.32 Aligned_cols=50 Identities=28% Similarity=0.553 Sum_probs=37.7
Q ss_pred CCcccccccccccccCCceeecCCCCCcccHhhHHHHHcCCC----ccccccccc
Q 038049 76 SASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHS----SCPTCRQRL 126 (141)
Q Consensus 76 ~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~----~CP~CR~~~ 126 (141)
.....|-+|....++.+.+... .|.-.||..|++.-+...+ .||-||..-
T Consensus 1106 ~~~~~c~~cr~k~~~~~m~lc~-~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1106 AVNALCKVCRRKKQDEKMLLCD-ECLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred cchhhhhhhhhcccchhhhhhH-hhhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 3457799999887665444444 4888899999999887644 499999866
No 263
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=38.57 E-value=22 Score=22.55 Aligned_cols=10 Identities=30% Similarity=0.723 Sum_probs=5.0
Q ss_pred cccccccccc
Q 038049 79 AGCAICLLDF 88 (141)
Q Consensus 79 ~~C~ICl~~~ 88 (141)
..|+=|-..|
T Consensus 10 R~Cp~CG~kF 19 (108)
T PF09538_consen 10 RTCPSCGAKF 19 (108)
T ss_pred ccCCCCcchh
Confidence 4455554444
No 264
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=38.39 E-value=73 Score=21.00 Aligned_cols=12 Identities=33% Similarity=0.545 Sum_probs=4.9
Q ss_pred HHHHHHHHhccc
Q 038049 25 SMLQCVFQCTQR 36 (141)
Q Consensus 25 ~~~~~~~~~~~~ 36 (141)
..+.++.++.|+
T Consensus 117 ~~~~~~yr~~r~ 128 (139)
T PHA03099 117 CCLLSVYRFTRR 128 (139)
T ss_pred HHHHhhheeeec
Confidence 333334444444
No 265
>PRK00418 DNA gyrase inhibitor; Reviewed
Probab=38.21 E-value=20 Score=20.37 Aligned_cols=11 Identities=36% Similarity=1.078 Sum_probs=9.0
Q ss_pred Ccccccccccc
Q 038049 117 SSCPTCRQRLK 127 (141)
Q Consensus 117 ~~CP~CR~~~~ 127 (141)
..||.|++++.
T Consensus 7 v~CP~C~k~~~ 17 (62)
T PRK00418 7 VNCPTCGKPVE 17 (62)
T ss_pred ccCCCCCCccc
Confidence 56999999874
No 266
>PF13179 DUF4006: Family of unknown function (DUF4006)
Probab=38.14 E-value=70 Score=18.42 Aligned_cols=16 Identities=19% Similarity=0.380 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 038049 8 VIVAAMLCALVCALGL 23 (141)
Q Consensus 8 ~i~~~~l~~~~~~l~~ 23 (141)
++..+++.++++++++
T Consensus 17 LIAvvLLLsIl~~lt~ 32 (66)
T PF13179_consen 17 LIAVVLLLSILAFLTY 32 (66)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444433333
No 267
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=38.07 E-value=90 Score=18.66 Aligned_cols=29 Identities=10% Similarity=0.046 Sum_probs=17.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038049 4 LNIMVIVAAMLCALVCALGLHSMLQCVFQ 32 (141)
Q Consensus 4 ~~~~~i~~~~l~~~~~~l~~~~~~~~~~~ 32 (141)
.+.-++.++++.=+++.+.++...+++-+
T Consensus 31 ls~g~LaGiV~~D~vlTLLIv~~vy~car 59 (79)
T PF07213_consen 31 LSPGLLAGIVAADAVLTLLIVLVVYYCAR 59 (79)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34456666666666666666666655554
No 268
>PRK03427 cell division protein ZipA; Provisional
Probab=37.95 E-value=70 Score=24.60 Aligned_cols=21 Identities=19% Similarity=0.210 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 038049 7 MVIVAAMLCALVCALGLHSML 27 (141)
Q Consensus 7 ~~i~~~~l~~~~~~l~~~~~~ 27 (141)
-+|++++..+.++.+++..+|
T Consensus 6 rLiLivvGAIAIiAlL~HGlW 26 (333)
T PRK03427 6 RLILIIVGAIAIIALLVHGFW 26 (333)
T ss_pred hhHHHHHHHHHHHHHHHHhhh
Confidence 344555544444444444444
No 269
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=37.94 E-value=14 Score=27.79 Aligned_cols=33 Identities=24% Similarity=0.511 Sum_probs=24.6
Q ss_pred cccccccccccccCCceeecCCCCCcccHhhHHH
Q 038049 78 SAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDK 111 (141)
Q Consensus 78 ~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~ 111 (141)
-..|.||..+-.+.+.+..-- |..-||.-|+.-
T Consensus 314 C~lC~IC~~P~~E~E~~FCD~-CDRG~HT~CVGL 346 (381)
T KOG1512|consen 314 CELCRICLGPVIESEHLFCDV-CDRGPHTLCVGL 346 (381)
T ss_pred cHhhhccCCcccchheecccc-ccCCCCcccccc
Confidence 456999998877776665554 888899988763
No 270
>PRK03814 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=37.57 E-value=95 Score=18.78 Aligned_cols=24 Identities=13% Similarity=0.127 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 038049 9 IVAAMLCALVCALGLHSMLQCVFQ 32 (141)
Q Consensus 9 i~~~~l~~~~~~l~~~~~~~~~~~ 32 (141)
.+.++..++++++++.+++..+.+
T Consensus 15 m~~GM~~VF~fL~lLi~~~~l~~~ 38 (85)
T PRK03814 15 MLTGMGVVFIFLTLLVYLVQLMSK 38 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444433333
No 271
>PF15339 Afaf: Acrosome formation-associated factor
Probab=37.51 E-value=70 Score=22.20 Aligned_cols=32 Identities=9% Similarity=0.087 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 038049 6 IMVIVAAMLCALVCALGLHSMLQCVFQCTQRA 37 (141)
Q Consensus 6 ~~~i~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 37 (141)
+-+++++.+..+++++.++.+....++..+..
T Consensus 130 lkLmLGIsLmTl~lfv~Ll~~c~atlyklk~l 161 (200)
T PF15339_consen 130 LKLMLGISLMTLFLFVILLAFCSATLYKLKHL 161 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566666666666666655555555554443
No 272
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=37.29 E-value=70 Score=22.45 Aligned_cols=17 Identities=18% Similarity=0.301 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 038049 8 VIVAAMLCALVCALGLH 24 (141)
Q Consensus 8 ~i~~~~l~~~~~~l~~~ 24 (141)
++++++.+++.+++|++
T Consensus 3 ii~~i~~~~vG~~~G~~ 19 (201)
T PF12072_consen 3 IIIAIVALIVGIGIGYL 19 (201)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333334333
No 273
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=36.37 E-value=61 Score=21.84 Aligned_cols=23 Identities=17% Similarity=0.280 Sum_probs=13.6
Q ss_pred CCCcccccccccccccCCceeecC
Q 038049 75 SSASAGCAICLLDFIDGDEIRLLP 98 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v~~lp 98 (141)
-+++..-+++|-+- .++.+..+.
T Consensus 94 mGg~LSFslAlLD~-~~nGvVlts 116 (151)
T PF14584_consen 94 MGGDLSFSLALLDD-NNNGVVLTS 116 (151)
T ss_pred ccccceeeeEEEeC-CCCEEEEEe
Confidence 34556788888663 444555543
No 274
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=36.34 E-value=18 Score=23.75 Aligned_cols=22 Identities=23% Similarity=0.372 Sum_probs=14.2
Q ss_pred ccccccccccCCceeecCCCCCcccH
Q 038049 81 CAICLLDFIDGDEIRLLPKCNHRFHV 106 (141)
Q Consensus 81 C~ICl~~~~~~~~v~~lp~C~H~Fh~ 106 (141)
=-||.+. ...|.... |||.|+.
T Consensus 60 lfi~qs~---~~rv~rce-cghsf~d 81 (165)
T COG4647 60 LFICQSA---QKRVIRCE-CGHSFGD 81 (165)
T ss_pred EEEEecc---cccEEEEe-ccccccC
Confidence 4466543 33466665 9999985
No 275
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=36.31 E-value=44 Score=19.12 Aligned_cols=9 Identities=22% Similarity=0.578 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 038049 7 MVIVAAMLC 15 (141)
Q Consensus 7 ~~i~~~~l~ 15 (141)
|+++.+++.
T Consensus 2 WIiiSIvLa 10 (66)
T PF07438_consen 2 WIIISIVLA 10 (66)
T ss_pred hhhHHHHHH
Confidence 344443333
No 276
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=36.05 E-value=16 Score=18.23 Aligned_cols=29 Identities=24% Similarity=0.563 Sum_probs=16.7
Q ss_pred cCCCCCcccHhhHHHHHcCCCcccccccccc
Q 038049 97 LPKCNHRFHVACIDKWLLSHSSCPTCRQRLK 127 (141)
Q Consensus 97 lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~ 127 (141)
-+.||++||..=--. +....|..|...|.
T Consensus 4 C~~Cg~~Yh~~~~pP--~~~~~Cd~cg~~L~ 32 (36)
T PF05191_consen 4 CPKCGRIYHIEFNPP--KVEGVCDNCGGELV 32 (36)
T ss_dssp ETTTTEEEETTTB----SSTTBCTTTTEBEB
T ss_pred cCCCCCccccccCCC--CCCCccCCCCCeeE
Confidence 346999999532111 22345888877654
No 277
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=36.03 E-value=44 Score=20.71 Aligned_cols=35 Identities=17% Similarity=0.344 Sum_probs=27.3
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHHHcC
Q 038049 79 AGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLS 115 (141)
Q Consensus 79 ~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~ 115 (141)
-.|.||-+.+..++.-..++ = ---|.+|+.+=..+
T Consensus 7 wkC~VCg~~iieGqkFTF~~-k-GsVH~eCl~~s~~~ 41 (103)
T COG4847 7 WKCYVCGGTIIEGQKFTFTK-K-GSVHYECLAESKRK 41 (103)
T ss_pred eeEeeeCCEeeeccEEEEee-C-CcchHHHHHHHHhc
Confidence 57999999999998877776 3 34799999875443
No 278
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=35.78 E-value=84 Score=20.98 Aligned_cols=8 Identities=50% Similarity=0.737 Sum_probs=3.3
Q ss_pred ccHHHHHH
Q 038049 4 LNIMVIVA 11 (141)
Q Consensus 4 ~~~~~i~~ 11 (141)
.+++.+++
T Consensus 3 ~~~~~~~~ 10 (159)
T PRK13461 3 INIPTIIA 10 (159)
T ss_pred CcHHHHHH
Confidence 44443333
No 279
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=35.66 E-value=79 Score=27.28 Aligned_cols=20 Identities=20% Similarity=0.172 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 038049 8 VIVAAMLCALVCALGLHSML 27 (141)
Q Consensus 8 ~i~~~~l~~~~~~l~~~~~~ 27 (141)
++++++...++++++++.++
T Consensus 274 fLl~ILG~~~livl~lL~vL 293 (807)
T PF10577_consen 274 FLLAILGGTALIVLILLCVL 293 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444443444444444444
No 280
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=35.61 E-value=18 Score=30.20 Aligned_cols=28 Identities=29% Similarity=0.889 Sum_probs=22.0
Q ss_pred CCCCcccHhhHHHHHcC-----CCccccccccc
Q 038049 99 KCNHRFHVACIDKWLLS-----HSSCPTCRQRL 126 (141)
Q Consensus 99 ~C~H~Fh~~Ci~~wl~~-----~~~CP~CR~~~ 126 (141)
.|+-.+|..|+..|+.. .-.||-||...
T Consensus 40 ~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvCe 72 (694)
T KOG4443|consen 40 DCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVCE 72 (694)
T ss_pred hhcccCCcchhhHHHhHHHhcCCcccCCceeee
Confidence 48999999999999864 24588887644
No 281
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=35.59 E-value=9 Score=25.00 Aligned_cols=16 Identities=31% Similarity=0.395 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhccc
Q 038049 21 LGLHSMLQCVFQCTQR 36 (141)
Q Consensus 21 l~~~~~~~~~~~~~~~ 36 (141)
+++++.+....+++|+
T Consensus 92 l~llsg~lv~rrcrrr 107 (129)
T PF12191_consen 92 LALLSGFLVWRRCRRR 107 (129)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHhhhhcc
Confidence 4444433333444333
No 282
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=35.24 E-value=29 Score=29.73 Aligned_cols=27 Identities=37% Similarity=0.770 Sum_probs=19.0
Q ss_pred cCCCCCcccHhhHHHHHcCCCcccccccccc
Q 038049 97 LPKCNHRFHVACIDKWLLSHSSCPTCRQRLK 127 (141)
Q Consensus 97 lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~ 127 (141)
.|.|.|.-|.+=|.. ...||+|.....
T Consensus 1159 C~~CkH~a~~~EIs~----y~~CPLCHs~~~ 1185 (1189)
T KOG2041|consen 1159 CPRCKHRAHQHEISK----YNCCPLCHSMES 1185 (1189)
T ss_pred ccccccccccccccc----cccCccccChhh
Confidence 445999988765443 477999987543
No 283
>PF04834 Adeno_E3_14_5: Early E3 14.5 kDa protein; InterPro: IPR008131 The E3B 14.5 kDa was first identified in human adenovirus type 5. It is an integral membrane protein oriented with its C terminus in the cytoplasm. It functions to down-regulate the epidermal growth factor receptor and prevent tumour necrosis factor cytolysis. It achieves this through the interaction with E3 10.4 kDa protein [, ]. ; GO: 0009966 regulation of signal transduction, 0016021 integral to membrane
Probab=35.16 E-value=58 Score=20.27 Aligned_cols=19 Identities=5% Similarity=-0.034 Sum_probs=7.7
Q ss_pred ccHHHHHHHHHHHHHHHHH
Q 038049 4 LNIMVIVAAMLCALVCALG 22 (141)
Q Consensus 4 ~~~~~i~~~~l~~~~~~l~ 22 (141)
..++.+++++++....+++
T Consensus 22 ~~Wl~~i~~~~v~~~t~~~ 40 (97)
T PF04834_consen 22 NYWLYAIGIVLVFCSTFFS 40 (97)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444443333333333
No 284
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=35.05 E-value=47 Score=23.85 Aligned_cols=33 Identities=15% Similarity=0.345 Sum_probs=20.9
Q ss_pred CCCCcccHhhHHHHHcC---CCccccccccccCCCC
Q 038049 99 KCNHRFHVACIDKWLLS---HSSCPTCRQRLKPSDA 131 (141)
Q Consensus 99 ~C~H~Fh~~Ci~~wl~~---~~~CP~CR~~~~~~~~ 131 (141)
.|.|.||..-+...-.. ...||.|.+-..+...
T Consensus 194 IC~~C~hhngl~~~~ek~~~efiC~~Cn~~n~~~~~ 229 (251)
T COG5415 194 ICPQCHHHNGLYRLAEKPIIEFICPHCNHKNDEVKE 229 (251)
T ss_pred ccccccccccccccccccchheecccchhhcCcccc
Confidence 38888877665554332 2459999886644433
No 285
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=34.53 E-value=30 Score=21.20 Aligned_cols=37 Identities=30% Similarity=0.515 Sum_probs=28.9
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccC
Q 038049 79 AGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKP 128 (141)
Q Consensus 79 ~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~ 128 (141)
..|.-|...+.--|.+ | |-.|+..+..|..|++++..
T Consensus 34 S~C~~C~~~L~~~~lI---P----------i~S~l~lrGrCr~C~~~I~~ 70 (92)
T PF06750_consen 34 SHCPHCGHPLSWWDLI---P----------ILSYLLLRGRCRYCGAPIPP 70 (92)
T ss_pred CcCcCCCCcCcccccc---h----------HHHHHHhCCCCcccCCCCCh
Confidence 5699998887666544 3 55799999999999998764
No 286
>PF00974 Rhabdo_glycop: Rhabdovirus spike glycoprotein; InterPro: IPR001903 Different families of ssRNA negative-strand viruses contain glycoproteins responsible for forming spikes on the surface of the virion. The glycoprotein spike is made up of a trimer of glycoproteins. These proteins are frequently abbreviated to G protein. Channel formed by glycoprotein spike is thought to function in a similar manner to Influenza virus M2 protein channel, thus allowing a signal to pass across the viral membrane to signal for viral uncoating [, ].; GO: 0019031 viral envelope; PDB: 2CMZ_C 2J6J_A 3EGD_D.
Probab=34.28 E-value=13 Score=30.05 Aligned_cols=22 Identities=18% Similarity=0.508 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 038049 13 MLCALVCALGLHSMLQCVFQCT 34 (141)
Q Consensus 13 ~l~~~~~~l~~~~~~~~~~~~~ 34 (141)
++.++++++++++++.++.+++
T Consensus 458 ~~~~vi~~illi~l~~cc~~~~ 479 (501)
T PF00974_consen 458 IAIAVILLILLILLIRCCCRCR 479 (501)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHhhhhc
Confidence 3333333344444445554443
No 287
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=34.08 E-value=1.1e+02 Score=20.49 Aligned_cols=17 Identities=18% Similarity=0.223 Sum_probs=7.9
Q ss_pred CCccHHHHHHHHHHHHH
Q 038049 2 ADLNIMVIVAAMLCALV 18 (141)
Q Consensus 2 ~~~~~~~i~~~~l~~~~ 18 (141)
|+..+|.++.+++++++
T Consensus 1 ~~~~~w~~i~f~i~l~~ 17 (159)
T PRK09173 1 MDATFWAFVGLVLFLAL 17 (159)
T ss_pred CCchHHHHHHHHHHHHH
Confidence 44555555544443333
No 288
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=33.78 E-value=28 Score=17.04 Aligned_cols=9 Identities=33% Similarity=1.043 Sum_probs=5.9
Q ss_pred Ccccccccc
Q 038049 117 SSCPTCRQR 125 (141)
Q Consensus 117 ~~CP~CR~~ 125 (141)
..||+|.++
T Consensus 19 ~~CP~Cg~~ 27 (34)
T cd00729 19 EKCPICGAP 27 (34)
T ss_pred CcCcCCCCc
Confidence 468887653
No 289
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=33.69 E-value=33 Score=16.11 Aligned_cols=28 Identities=21% Similarity=0.433 Sum_probs=15.6
Q ss_pred cccccccccccCCceeecCCCCCcccHhh
Q 038049 80 GCAICLLDFIDGDEIRLLPKCNHRFHVAC 108 (141)
Q Consensus 80 ~C~ICl~~~~~~~~v~~lp~C~H~Fh~~C 108 (141)
.|.+|..+..... ...-..|+-.+|..|
T Consensus 2 ~C~~C~~~~~~~~-~Y~C~~c~f~lh~~C 29 (30)
T PF03107_consen 2 WCDVCRRKIDGFY-FYHCSECCFTLHVRC 29 (30)
T ss_pred CCCCCCCCcCCCE-eEEeCCCCCeEcCcc
Confidence 4778866543332 222223777777776
No 290
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=33.68 E-value=1.2e+02 Score=18.98 Aligned_cols=34 Identities=21% Similarity=0.296 Sum_probs=20.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 038049 4 LNIMVIVAAMLCALVCALGLHSMLQCVFQCTQRA 37 (141)
Q Consensus 4 ~~~~~i~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 37 (141)
..+-+++++++..+++++.+=.-+++-++...+.
T Consensus 19 ~LVGVv~~al~~SlLIalaaKC~~~~k~~~SY~H 52 (102)
T PF15176_consen 19 FLVGVVVTALVTSLLIALAAKCPVWYKYLASYRH 52 (102)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccc
Confidence 4455666666666666666666665555444443
No 291
>PRK10220 hypothetical protein; Provisional
Probab=33.07 E-value=34 Score=21.81 Aligned_cols=26 Identities=23% Similarity=0.699 Sum_probs=15.6
Q ss_pred ccccccccccccCC-ceeecCCCCCcc
Q 038049 79 AGCAICLLDFIDGD-EIRLLPKCNHRF 104 (141)
Q Consensus 79 ~~C~ICl~~~~~~~-~v~~lp~C~H~F 104 (141)
..|+-|-.+|.-.+ ...+.|.|+|-|
T Consensus 4 P~CP~C~seytY~d~~~~vCpeC~hEW 30 (111)
T PRK10220 4 PHCPKCNSEYTYEDNGMYICPECAHEW 30 (111)
T ss_pred CcCCCCCCcceEcCCCeEECCcccCcC
Confidence 45888888876543 234445566643
No 292
>PF05810 NinF: NinF protein; InterPro: IPR008712 This family consists of several bacteriophage NinF proteins as well as related sequences from Escherichia coli.
Probab=32.90 E-value=38 Score=18.80 Aligned_cols=11 Identities=27% Similarity=0.854 Sum_probs=9.3
Q ss_pred ccHhhHHHHHc
Q 038049 104 FHVACIDKWLL 114 (141)
Q Consensus 104 Fh~~Ci~~wl~ 114 (141)
-|..|+.+||.
T Consensus 34 ~Ce~C~~E~l~ 44 (58)
T PF05810_consen 34 VCEECCAEWLV 44 (58)
T ss_pred HHHHHHHHHHh
Confidence 46889999987
No 293
>KOG1140 consensus N-end rule pathway, recognition component UBR1 [Posttranslational modification, protein turnover, chaperones]
Probab=32.87 E-value=22 Score=33.06 Aligned_cols=16 Identities=25% Similarity=0.949 Sum_probs=14.4
Q ss_pred CCCCcccHhhHHHHHc
Q 038049 99 KCNHRFHVACIDKWLL 114 (141)
Q Consensus 99 ~C~H~Fh~~Ci~~wl~ 114 (141)
.|||.-|.+|....+.
T Consensus 1150 ~c~h~mh~~c~~~~~~ 1165 (1738)
T KOG1140|consen 1150 SCGHHMHYGCFKRYVQ 1165 (1738)
T ss_pred ccCCcchHHHHHHHHH
Confidence 4999999999999884
No 294
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=32.82 E-value=5.2 Score=22.04 Aligned_cols=33 Identities=24% Similarity=0.558 Sum_probs=16.5
Q ss_pred cccc--cccccccCCce----eecCCCCCcccHhhHHHH
Q 038049 80 GCAI--CLLDFIDGDEI----RLLPKCNHRFHVACIDKW 112 (141)
Q Consensus 80 ~C~I--Cl~~~~~~~~v----~~lp~C~H~Fh~~Ci~~w 112 (141)
.|+- |-..+...+.. ..-+.|++.|+..|-..|
T Consensus 20 ~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~~ 58 (64)
T PF01485_consen 20 WCPNPDCEYIIEKDDGCNSPIVTCPSCGTEFCFKCGEPW 58 (64)
T ss_dssp --TTSST---ECS-SSTTS--CCTTSCCSEECSSSTSES
T ss_pred CCCCCCCcccEEecCCCCCCeeECCCCCCcCccccCccc
Confidence 4655 65555433221 233358899998887776
No 295
>PF15069 FAM163: FAM163 family
Probab=32.24 E-value=24 Score=23.53 Aligned_cols=18 Identities=6% Similarity=0.133 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 038049 10 VAAMLCALVCALGLHSML 27 (141)
Q Consensus 10 ~~~~l~~~~~~l~~~~~~ 27 (141)
.++++..++++.+++.+-
T Consensus 9 tGgILAtVILLcIIaVLC 26 (143)
T PF15069_consen 9 TGGILATVILLCIIAVLC 26 (143)
T ss_pred echHHHHHHHHHHHHHHH
Confidence 334444444333333333
No 296
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=32.21 E-value=64 Score=25.01 Aligned_cols=25 Identities=8% Similarity=0.146 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccC
Q 038049 14 LCALVCALGLHSMLQCVFQCTQRALT 39 (141)
Q Consensus 14 l~~~~~~l~~~~~~~~~~~~~~~~~~ 39 (141)
+.+++.++.+++++. +++..-|++|
T Consensus 313 iaSiIAIvvIVLIMv-IIYLILRYRR 337 (353)
T TIGR01477 313 IASIIAILIIVLIMV-IIYLILRYRR 337 (353)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHhhh
Confidence 333444444444443 4444445443
No 297
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=31.51 E-value=33 Score=15.52 Aligned_cols=10 Identities=30% Similarity=0.969 Sum_probs=5.4
Q ss_pred CCcccccccc
Q 038049 116 HSSCPTCRQR 125 (141)
Q Consensus 116 ~~~CP~CR~~ 125 (141)
.+.||.|-++
T Consensus 16 ~~fC~~CG~~ 25 (26)
T PF13248_consen 16 AKFCPNCGAK 25 (26)
T ss_pred cccChhhCCC
Confidence 3456666544
No 298
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=31.32 E-value=20 Score=20.22 Aligned_cols=10 Identities=40% Similarity=1.158 Sum_probs=7.7
Q ss_pred cccccccccc
Q 038049 118 SCPTCRQRLK 127 (141)
Q Consensus 118 ~CP~CR~~~~ 127 (141)
.||.||.++.
T Consensus 10 aCP~~kg~L~ 19 (60)
T COG2835 10 ACPVCKGPLV 19 (60)
T ss_pred eccCcCCcce
Confidence 4888888764
No 299
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=31.19 E-value=12 Score=19.98 Aligned_cols=25 Identities=32% Similarity=0.614 Sum_probs=13.4
Q ss_pred CCCCcccHhhHHHHHcCCCccccccc
Q 038049 99 KCNHRFHVACIDKWLLSHSSCPTCRQ 124 (141)
Q Consensus 99 ~C~H~Fh~~Ci~~wl~~~~~CP~CR~ 124 (141)
.|||.|-..--.. -.....||.|..
T Consensus 10 ~Cg~~fe~~~~~~-~~~~~~CP~Cg~ 34 (52)
T TIGR02605 10 ACGHRFEVLQKMS-DDPLATCPECGG 34 (52)
T ss_pred CCCCEeEEEEecC-CCCCCCCCCCCC
Confidence 4888776421000 012346999987
No 300
>PHA03286 envelope glycoprotein E; Provisional
Probab=30.83 E-value=89 Score=25.16 Aligned_cols=21 Identities=10% Similarity=0.176 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcc
Q 038049 15 CALVCALGLHSMLQCVFQCTQ 35 (141)
Q Consensus 15 ~~~~~~l~~~~~~~~~~~~~~ 35 (141)
.++++++.+.+.+.+.+++++
T Consensus 399 ~~~~~~~~~~~~~~~~~~r~~ 419 (492)
T PHA03286 399 GAILVVLLFALCIAGLYRRRR 419 (492)
T ss_pred HHHHHHHHHHHHhHhHhhhhh
Confidence 333333333333444444333
No 301
>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].
Probab=30.75 E-value=34 Score=17.68 Aligned_cols=18 Identities=28% Similarity=0.802 Sum_probs=12.3
Q ss_pred HHHcCCCccccccccccC
Q 038049 111 KWLLSHSSCPTCRQRLKP 128 (141)
Q Consensus 111 ~wl~~~~~CP~CR~~~~~ 128 (141)
-|---...||.|..++..
T Consensus 12 G~~ML~~~Cp~C~~PL~~ 29 (41)
T PF06677_consen 12 GWTMLDEHCPDCGTPLMR 29 (41)
T ss_pred hHhHhcCccCCCCCeeEE
Confidence 344446779999877765
No 302
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=29.61 E-value=79 Score=27.28 Aligned_cols=28 Identities=14% Similarity=0.342 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 038049 9 IVAAMLCALVCALGLHSMLQCVFQCTQR 36 (141)
Q Consensus 9 i~~~~l~~~~~~l~~~~~~~~~~~~~~~ 36 (141)
+.+++.+.+++++.++.+.+|+.||.++
T Consensus 95 v~~~i~ll~~il~P~vg~~fCcCRCc~~ 122 (806)
T PF05478_consen 95 VCAVIGLLFIILMPLVGLCFCCCRCCGN 122 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCC
Confidence 3344444444455555556666676554
No 303
>KOG3352 consensus Cytochrome c oxidase, subunit Vb/COX4 [Energy production and conversion]
Probab=29.59 E-value=29 Score=23.39 Aligned_cols=7 Identities=57% Similarity=1.151 Sum_probs=3.7
Q ss_pred cccccccc
Q 038049 80 GCAICLLD 87 (141)
Q Consensus 80 ~C~ICl~~ 87 (141)
-| +|.++
T Consensus 113 GC-~c~eD 119 (153)
T KOG3352|consen 113 GC-GCEED 119 (153)
T ss_pred ee-cccCC
Confidence 46 66544
No 304
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=29.58 E-value=44 Score=16.92 Aligned_cols=32 Identities=22% Similarity=0.504 Sum_probs=23.0
Q ss_pred ccccccccccccCC-ceeecCCCCCcccHhhHHH
Q 038049 79 AGCAICLLDFIDGD-EIRLLPKCNHRFHVACIDK 111 (141)
Q Consensus 79 ~~C~ICl~~~~~~~-~v~~lp~C~H~Fh~~Ci~~ 111 (141)
..|.+|.+.+.... ..+-.. |+=..|.+|...
T Consensus 12 ~~C~~C~~~i~~~~~~~~C~~-C~~~~H~~C~~~ 44 (49)
T smart00109 12 TKCCVCRKSIWGSFQGLRCSW-CKVKCHKKCAEK 44 (49)
T ss_pred CCccccccccCcCCCCcCCCC-CCchHHHHHHhh
Confidence 56999988876532 444444 888899999875
No 305
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=29.52 E-value=33 Score=17.64 Aligned_cols=32 Identities=25% Similarity=0.514 Sum_probs=23.0
Q ss_pred cccccccccccc--CCceeecCCCCCcccHhhHHH
Q 038049 79 AGCAICLLDFID--GDEIRLLPKCNHRFHVACIDK 111 (141)
Q Consensus 79 ~~C~ICl~~~~~--~~~v~~lp~C~H~Fh~~Ci~~ 111 (141)
..|.+|.+.+.. .+..+-.. |+=..|.+|.+.
T Consensus 12 ~~C~~C~~~i~~~~~~~~~C~~-C~~~~H~~C~~~ 45 (50)
T cd00029 12 TFCDVCRKSIWGLFKQGLRCSW-CKVKCHKKCADK 45 (50)
T ss_pred CChhhcchhhhccccceeEcCC-CCCchhhhhhcc
Confidence 569999888764 34445444 888899999764
No 306
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=29.47 E-value=21 Score=18.07 Aligned_cols=12 Identities=42% Similarity=1.157 Sum_probs=8.4
Q ss_pred ccccccccccCC
Q 038049 118 SCPTCRQRLKPS 129 (141)
Q Consensus 118 ~CP~CR~~~~~~ 129 (141)
.||.|+..+...
T Consensus 1 ~CP~C~~~l~~~ 12 (41)
T PF13453_consen 1 KCPRCGTELEPV 12 (41)
T ss_pred CcCCCCcccceE
Confidence 489998866543
No 307
>PTZ00046 rifin; Provisional
Probab=29.10 E-value=72 Score=24.80 Aligned_cols=26 Identities=8% Similarity=0.163 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccC
Q 038049 13 MLCALVCALGLHSMLQCVFQCTQRALT 39 (141)
Q Consensus 13 ~l~~~~~~l~~~~~~~~~~~~~~~~~~ 39 (141)
++.+++.++.+++++. +++..-|++|
T Consensus 317 IiaSiiAIvVIVLIMv-IIYLILRYRR 342 (358)
T PTZ00046 317 IIASIVAIVVIVLIMV-IIYLILRYRR 342 (358)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHhhh
Confidence 3334444444444443 4444455543
No 308
>PRK11827 hypothetical protein; Provisional
Probab=29.07 E-value=19 Score=20.31 Aligned_cols=18 Identities=17% Similarity=0.257 Sum_probs=12.5
Q ss_pred CccccccccccCCCCCCC
Q 038049 117 SSCPTCRQRLKPSDAMPS 134 (141)
Q Consensus 117 ~~CP~CR~~~~~~~~~~~ 134 (141)
-.|..|+..+..+++.|.
T Consensus 27 Lic~~~~laYPI~dgIPV 44 (60)
T PRK11827 27 LICKLDNLAFPLRDGIPV 44 (60)
T ss_pred EECCccCeeccccCCccc
Confidence 457777777777777665
No 309
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=28.72 E-value=1.3e+02 Score=17.61 Aligned_cols=10 Identities=10% Similarity=0.438 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 038049 9 IVAAMLCALV 18 (141)
Q Consensus 9 i~~~~l~~~~ 18 (141)
+++.++++++
T Consensus 62 l~l~~~~Gl~ 71 (82)
T PF13807_consen 62 LALGLFLGLI 71 (82)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 310
>TIGR01053 LSD1 zinc finger domain, LSD1 subclass. This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC
Probab=28.31 E-value=41 Score=16.17 Aligned_cols=15 Identities=27% Similarity=0.472 Sum_probs=8.9
Q ss_pred ccccccccccCCCCC
Q 038049 118 SCPTCRQRLKPSDAM 132 (141)
Q Consensus 118 ~CP~CR~~~~~~~~~ 132 (141)
.|+.||..+.-+.+.
T Consensus 3 ~C~~C~t~L~yP~gA 17 (31)
T TIGR01053 3 VCGGCRTLLMYPRGA 17 (31)
T ss_pred CcCCCCcEeecCCCC
Confidence 467777766554443
No 311
>PF05353 Atracotoxin: Delta Atracotoxin; InterPro: IPR008017 Delta atracotoxin produces potentially fatal neurotoxic symptoms in primates by slowing the inactivation of voltage-gated sodium channels []. The structure of atracotoxin comprises a core beta region containing a triple-stranded a thumb-like extension protruding from the beta region and a C-terminal helix. The beta region contains a cystine knot motif, a feature seen in other neurotoxic polypeptides [].; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 2ROO_A 1VTX_A 1QDP_A.
Probab=28.26 E-value=3.3 Score=21.18 Aligned_cols=15 Identities=40% Similarity=0.928 Sum_probs=11.0
Q ss_pred HhhHHHHHcCCCccc
Q 038049 106 VACIDKWLLSHSSCP 120 (141)
Q Consensus 106 ~~Ci~~wl~~~~~CP 120 (141)
..||..|.+.+.+|-
T Consensus 18 mkCiyAWYnqq~sCq 32 (42)
T PF05353_consen 18 MKCIYAWYNQQSSCQ 32 (42)
T ss_dssp EEEEE-SSGSTEEEE
T ss_pred HHHHHHHHccCCchH
Confidence 468889998888874
No 312
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=27.90 E-value=1.3e+02 Score=20.41 Aligned_cols=9 Identities=22% Similarity=0.331 Sum_probs=4.0
Q ss_pred CCccHHHHH
Q 038049 2 ADLNIMVIV 10 (141)
Q Consensus 2 ~~~~~~~i~ 10 (141)
|+.++.+.+
T Consensus 15 ~~~~~~~~~ 23 (174)
T PRK07352 15 FGLNLNLLE 23 (174)
T ss_pred CCCchhHHH
Confidence 444444333
No 313
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=27.71 E-value=1.3e+02 Score=17.25 Aligned_cols=6 Identities=17% Similarity=0.490 Sum_probs=2.2
Q ss_pred HHHHHH
Q 038049 21 LGLHSM 26 (141)
Q Consensus 21 l~~~~~ 26 (141)
+++++.
T Consensus 13 ~Gff~a 18 (64)
T PF03672_consen 13 IGFFIA 18 (64)
T ss_pred HHHHHH
Confidence 333333
No 314
>PRK03427 cell division protein ZipA; Provisional
Probab=27.63 E-value=76 Score=24.40 Aligned_cols=30 Identities=3% Similarity=-0.019 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCCc
Q 038049 12 AMLCALVCALGLHSMLQCVFQCTQRALTEP 41 (141)
Q Consensus 12 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 41 (141)
.+|+++..+.++.+++.-+|..++......
T Consensus 7 LiLivvGAIAIiAlL~HGlWtsRKers~~f 36 (333)
T PRK03427 7 LILIIVGAIAIIALLVHGFWTSRKERSSMF 36 (333)
T ss_pred hHHHHHHHHHHHHHHHHhhhhccccccchh
Confidence 466666767777777777776655543333
No 315
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=27.63 E-value=29 Score=21.25 Aligned_cols=18 Identities=17% Similarity=0.058 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 038049 15 CALVCALGLHSMLQCVFQ 32 (141)
Q Consensus 15 ~~~~~~l~~~~~~~~~~~ 32 (141)
++++.++.+.+.+..+.+
T Consensus 43 ~~lvaVg~~YL~y~~fLk 60 (91)
T PF01708_consen 43 FTLVAVGCLYLAYTWFLK 60 (91)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 316
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=27.57 E-value=36 Score=25.41 Aligned_cols=13 Identities=15% Similarity=0.189 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 038049 20 ALGLHSMLQCVFQ 32 (141)
Q Consensus 20 ~l~~~~~~~~~~~ 32 (141)
+++++.++...++
T Consensus 243 ll~l~Gii~~~~~ 255 (281)
T PF12768_consen 243 LLVLIGIILAYIR 255 (281)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 317
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=27.54 E-value=45 Score=24.45 Aligned_cols=24 Identities=21% Similarity=0.535 Sum_probs=16.9
Q ss_pred cHhhHHHHHcCCCccccccccccC
Q 038049 105 HVACIDKWLLSHSSCPTCRQRLKP 128 (141)
Q Consensus 105 h~~Ci~~wl~~~~~CP~CR~~~~~ 128 (141)
...-+..|..+++.||.|.+++..
T Consensus 88 ~a~~l~~w~~~~~fC~~CG~~~~~ 111 (256)
T PRK00241 88 RAVQLAEFYRSHRFCGYCGHPMHP 111 (256)
T ss_pred HHHHHHHHhhcCccccccCCCCee
Confidence 344566787788888888877643
No 318
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=27.50 E-value=61 Score=15.82 Aligned_cols=10 Identities=30% Similarity=0.707 Sum_probs=5.5
Q ss_pred cccccccccc
Q 038049 80 GCAICLLDFI 89 (141)
Q Consensus 80 ~C~ICl~~~~ 89 (141)
+|+-|-..|.
T Consensus 4 ~CP~C~~~~~ 13 (38)
T TIGR02098 4 QCPNCKTSFR 13 (38)
T ss_pred ECCCCCCEEE
Confidence 4666655543
No 319
>PRK14756 hypothetical protein; Provisional
Probab=27.27 E-value=81 Score=14.83 Aligned_cols=21 Identities=29% Similarity=0.619 Sum_probs=9.0
Q ss_pred CccHHHHHHHHHHHHHHHHHH
Q 038049 3 DLNIMVIVAAMLCALVCALGL 23 (141)
Q Consensus 3 ~~~~~~i~~~~l~~~~~~l~~ 23 (141)
|..+.++..++...+++..++
T Consensus 4 dLK~SL~tTvvaL~~Iva~~~ 24 (29)
T PRK14756 4 DLKFSLVTTIIVLGLIVAVGL 24 (29)
T ss_pred chhhhHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
No 320
>PRK11595 DNA utilization protein GntX; Provisional
Probab=27.18 E-value=57 Score=23.30 Aligned_cols=38 Identities=16% Similarity=0.390 Sum_probs=19.8
Q ss_pred cccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccc
Q 038049 80 GCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRL 126 (141)
Q Consensus 80 ~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~ 126 (141)
.|.+|-..+... ....|..|...+-.....||.|-.++
T Consensus 7 ~C~~C~~~~~~~---------~~~lC~~C~~~l~~~~~~C~~Cg~~~ 44 (227)
T PRK11595 7 LCWLCRMPLALS---------HWGICSVCSRALRTLKTCCPQCGLPA 44 (227)
T ss_pred cCccCCCccCCC---------CCcccHHHHhhCCcccCcCccCCCcC
Confidence 477776544221 11256666665532234577776554
No 321
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.17 E-value=54 Score=27.66 Aligned_cols=51 Identities=25% Similarity=0.624 Sum_probs=34.1
Q ss_pred cccccccccccCCceeecCCCCC-cccHhhHHHHHc--C----CCccccccccccCCCCCCC
Q 038049 80 GCAICLLDFIDGDEIRLLPKCNH-RFHVACIDKWLL--S----HSSCPTCRQRLKPSDAMPS 134 (141)
Q Consensus 80 ~C~ICl~~~~~~~~v~~lp~C~H-~Fh~~Ci~~wl~--~----~~~CP~CR~~~~~~~~~~~ 134 (141)
.|+||-..+ +.+..- .||| .-+..|...... . ...||+||..+..+.....
T Consensus 2 ~c~ic~~s~---~~~~~~-s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~~~s~~~~ 59 (669)
T KOG2231|consen 2 SCAICAFSP---DFVGRG-SCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVETKSNGDS 59 (669)
T ss_pred CcceeecCc---cccccc-cccccccchhhhhhhhhhcccccccccCcccccceeeeccccc
Confidence 488887553 333444 4999 799999987643 2 3448999998766544433
No 322
>PF01528 Herpes_glycop: Herpesvirus glycoprotein M; InterPro: IPR000785 The Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) protein belongs to a family of sequences that groups together Human herpesvirus 1 (HHV-1) UL10, EHV-1 52, Human herpesvirus 3 (HHV-3) 50, Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) BBRF3, Human herpesvirus 1 (HHV-1) 39 and Human cytomegalovirus (HHV-5) UL100. Little is yet known about the properties of the protein. However, its amino acid sequence is highly hydrophobic, containing 8 putative membrane-spanning regions, and it is therefore believed to be either membrane-associated or transmembrane.; GO: 0016020 membrane
Probab=26.92 E-value=1.1e+02 Score=23.92 Aligned_cols=25 Identities=4% Similarity=0.158 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Q 038049 11 AAMLCALVCALGLHSMLQCVFQCTQ 35 (141)
Q Consensus 11 ~~~l~~~~~~l~~~~~~~~~~~~~~ 35 (141)
..++.++.++..+.-+.++..+.++
T Consensus 309 la~i~~i~l~~~vvR~vR~~~~hr~ 333 (374)
T PF01528_consen 309 LAVIAIICLIMMVVRLVRAFLYHRR 333 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344444455556666666555433
No 323
>COG2824 PhnA Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=26.85 E-value=39 Score=21.44 Aligned_cols=28 Identities=18% Similarity=0.456 Sum_probs=16.3
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHHH
Q 038049 79 AGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWL 113 (141)
Q Consensus 79 ~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl 113 (141)
.-|+.|-++|.-.+.. +..|..|-.+|-
T Consensus 4 p~cp~c~sEytYed~~-------~~~cpec~~ew~ 31 (112)
T COG2824 4 PPCPKCNSEYTYEDGG-------QLICPECAHEWN 31 (112)
T ss_pred CCCCccCCceEEecCc-------eEeCchhccccc
Confidence 4588888888655433 224445555664
No 324
>COG3190 FliO Flagellar biogenesis protein [Cell motility and secretion]
Probab=26.55 E-value=1.9e+02 Score=19.22 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Q 038049 13 MLCALVCALGLHSMLQCVFQCTQ 35 (141)
Q Consensus 13 ~l~~~~~~l~~~~~~~~~~~~~~ 35 (141)
++..++++|+++.+..+.+++..
T Consensus 27 ~~gsL~~iL~lil~~~wl~kr~~ 49 (137)
T COG3190 27 MFGSLILILALILFLAWLVKRLG 49 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444444444444333
No 325
>PHA02942 putative transposase; Provisional
Probab=26.34 E-value=72 Score=24.93 Aligned_cols=36 Identities=17% Similarity=0.316 Sum_probs=22.8
Q ss_pred Cccccccccccccc-CCceeecCCCCCcccHhhHHHH
Q 038049 77 ASAGCAICLLDFID-GDEIRLLPKCNHRFHVACIDKW 112 (141)
Q Consensus 77 ~~~~C~ICl~~~~~-~~~v~~lp~C~H~Fh~~Ci~~w 112 (141)
...+|+.|-..... .+.+...+.|||..|.|=.-.+
T Consensus 324 TSq~Cs~CG~~~~~l~~r~f~C~~CG~~~drD~nAA~ 360 (383)
T PHA02942 324 SSVSCPKCGHKMVEIAHRYFHCPSCGYENDRDVIAIM 360 (383)
T ss_pred CCccCCCCCCccCcCCCCEEECCCCCCEeCcHHHHHH
Confidence 45779999865432 2234455569999988765443
No 326
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=26.06 E-value=1e+02 Score=21.37 Aligned_cols=18 Identities=28% Similarity=0.571 Sum_probs=13.8
Q ss_pred HcCCCccccccccccCCC
Q 038049 113 LLSHSSCPTCRQRLKPSD 130 (141)
Q Consensus 113 l~~~~~CP~CR~~~~~~~ 130 (141)
+.....||.|...+..-+
T Consensus 133 ~~~~F~Cp~Cg~~L~~~d 150 (178)
T PRK06266 133 MEYGFRCPQCGEMLEEYD 150 (178)
T ss_pred hhcCCcCCCCCCCCeecc
Confidence 445788999999887643
No 327
>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.
Probab=25.99 E-value=52 Score=18.66 Aligned_cols=8 Identities=38% Similarity=1.306 Sum_probs=3.7
Q ss_pred cccccccc
Q 038049 119 CPTCRQRL 126 (141)
Q Consensus 119 CP~CR~~~ 126 (141)
||.|++.+
T Consensus 56 Cp~c~r~Y 63 (68)
T PF03966_consen 56 CPECGREY 63 (68)
T ss_dssp ETTTTEEE
T ss_pred cCCCCCEE
Confidence 55554433
No 328
>PF07503 zf-HYPF: HypF finger; InterPro: IPR011125 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Proteins of the HypF family are involved in the maturation and regulation of hydrogenase []. In the N terminus they appear to have two zinc finger domains that are similar to those found in the DnaJ chaperone []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3TTD_A 3TSQ_A 3TTC_A 3TSP_A 3TTF_A 3TSU_A.
Probab=25.23 E-value=58 Score=16.14 Aligned_cols=8 Identities=38% Similarity=0.949 Sum_probs=3.6
Q ss_pred Cccccccc
Q 038049 117 SSCPTCRQ 124 (141)
Q Consensus 117 ~~CP~CR~ 124 (141)
.+|+.|-=
T Consensus 22 isC~~CGP 29 (35)
T PF07503_consen 22 ISCTNCGP 29 (35)
T ss_dssp --BTTCC-
T ss_pred ccCCCCCC
Confidence 34777743
No 329
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=25.15 E-value=33 Score=21.96 Aligned_cols=7 Identities=43% Similarity=0.790 Sum_probs=2.9
Q ss_pred ccHhhHH
Q 038049 104 FHVACID 110 (141)
Q Consensus 104 Fh~~Ci~ 110 (141)
|.+.-|.
T Consensus 74 v~r~AI~ 80 (113)
T PRK06531 74 FELAAIK 80 (113)
T ss_pred EEhhHhh
Confidence 4444443
No 330
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=25.12 E-value=1.6e+02 Score=20.09 Aligned_cols=21 Identities=29% Similarity=0.177 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 038049 8 VIVAAMLCALVCALGLHSMLQ 28 (141)
Q Consensus 8 ~i~~~~l~~~~~~l~~~~~~~ 28 (141)
+++++.++++.+++....+..
T Consensus 39 ~~lg~~~lAlg~vL~~~g~~~ 59 (191)
T PF04156_consen 39 FILGIALLALGVVLLSLGLLC 59 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333343344444444433
No 331
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=24.97 E-value=34 Score=17.75 Aligned_cols=16 Identities=25% Similarity=0.567 Sum_probs=11.2
Q ss_pred CCccccccccccCCCC
Q 038049 116 HSSCPTCRQRLKPSDA 131 (141)
Q Consensus 116 ~~~CP~CR~~~~~~~~ 131 (141)
...||.|..++..++.
T Consensus 21 ~~~Cp~CG~~~~~~~~ 36 (46)
T PRK00398 21 GVRCPYCGYRILFKER 36 (46)
T ss_pred ceECCCCCCeEEEccC
Confidence 4569999887765443
No 332
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=24.91 E-value=37 Score=17.68 Aligned_cols=12 Identities=25% Similarity=0.844 Sum_probs=8.0
Q ss_pred CCcccccccccc
Q 038049 116 HSSCPTCRQRLK 127 (141)
Q Consensus 116 ~~~CP~CR~~~~ 127 (141)
.+.||+|-.++.
T Consensus 8 ~K~C~~C~rpf~ 19 (42)
T PF10013_consen 8 SKICPVCGRPFT 19 (42)
T ss_pred CCcCcccCCcch
Confidence 456888877654
No 333
>PRK00420 hypothetical protein; Validated
Probab=24.91 E-value=60 Score=20.77 Aligned_cols=10 Identities=30% Similarity=0.849 Sum_probs=6.7
Q ss_pred cccccccccc
Q 038049 79 AGCAICLLDF 88 (141)
Q Consensus 79 ~~C~ICl~~~ 88 (141)
..||.|-.++
T Consensus 24 ~~CP~Cg~pL 33 (112)
T PRK00420 24 KHCPVCGLPL 33 (112)
T ss_pred CCCCCCCCcc
Confidence 5588886554
No 334
>KOG2789 consensus Putative Zn-finger protein [General function prediction only]
Probab=24.85 E-value=26 Score=27.59 Aligned_cols=33 Identities=18% Similarity=0.559 Sum_probs=21.7
Q ss_pred cccccccccccccCCceeecCCCCCcccHhhHHHH
Q 038049 78 SAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKW 112 (141)
Q Consensus 78 ~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~w 112 (141)
..+|+||+-.|-..-.... .|.--.|.+|+.+.
T Consensus 74 ~~ecpicflyyps~~n~~r--cC~~~Ic~ecf~~~ 106 (482)
T KOG2789|consen 74 KTECPICFLYYPSAKNLVR--CCSETICGECFAPF 106 (482)
T ss_pred cccCceeeeecccccchhh--hhccchhhhheecc
Confidence 3589999988855332222 27777777787654
No 335
>PF14353 CpXC: CpXC protein
Probab=24.78 E-value=66 Score=20.61 Aligned_cols=10 Identities=30% Similarity=1.371 Sum_probs=6.2
Q ss_pred cccccccccc
Q 038049 118 SCPTCRQRLK 127 (141)
Q Consensus 118 ~CP~CR~~~~ 127 (141)
+||.|.+...
T Consensus 40 ~CP~Cg~~~~ 49 (128)
T PF14353_consen 40 TCPSCGHKFR 49 (128)
T ss_pred ECCCCCCcee
Confidence 4777766554
No 336
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=24.63 E-value=84 Score=24.10 Aligned_cols=44 Identities=9% Similarity=-0.016 Sum_probs=30.5
Q ss_pred CcccccccccccccCCceeecCCCCCc-ccHhhHHHHHcCCCccccccccc
Q 038049 77 ASAGCAICLLDFIDGDEIRLLPKCNHR-FHVACIDKWLLSHSSCPTCRQRL 126 (141)
Q Consensus 77 ~~~~C~ICl~~~~~~~~v~~lp~C~H~-Fh~~Ci~~wl~~~~~CP~CR~~~ 126 (141)
...+|..|-+..... ...+ |+|. |+-.|-. +.-..+||+|....
T Consensus 342 s~~~~~~~~~~~~st---~~~~-~~~n~~~~~~a~--~s~~~~~~~c~~~~ 386 (394)
T KOG2113|consen 342 SSLKGTSAGFGLLST---IWSG-GNMNLSPGSLAS--ASASPTSSTCDHND 386 (394)
T ss_pred hhcccccccCceeee---Eeec-CCcccChhhhhh--cccCCccccccccc
Confidence 356788886554332 4555 9987 8888877 45678899997644
No 337
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=24.62 E-value=1.4e+02 Score=16.79 Aligned_cols=13 Identities=8% Similarity=0.230 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 038049 20 ALGLHSMLQCVFQ 32 (141)
Q Consensus 20 ~l~~~~~~~~~~~ 32 (141)
++.++.++++.++
T Consensus 19 ~l~fiavi~~ayr 31 (60)
T COG4736 19 TLFFIAVIYFAYR 31 (60)
T ss_pred HHHHHHHHHHHhc
Confidence 3333333433333
No 338
>PF12172 DUF35_N: Rubredoxin-like zinc ribbon domain (DUF35_N); InterPro: IPR022002 This domain has no known function and is found in conserved hypothetical archaeal and bacterial proteins. The domain is duplicated in O53566 from SWISSPROT. The structure of a DUF35 representative reveals two long N-terminal helices followed by a rubredoxin-like zinc ribbon domain represented in this family and a C-terminal OB fold domain. Zinc is chelated by the four conserved cysteines in the alignment. ; PDB: 3IRB_A.
Probab=24.48 E-value=25 Score=17.29 Aligned_cols=18 Identities=22% Similarity=0.674 Sum_probs=8.6
Q ss_pred CCCCcccHhhHHHHHcCCCccccccc
Q 038049 99 KCNHRFHVACIDKWLLSHSSCPTCRQ 124 (141)
Q Consensus 99 ~C~H~Fh~~Ci~~wl~~~~~CP~CR~ 124 (141)
.||++++. -...||.|..
T Consensus 16 ~Cg~~~~p--------Pr~~Cp~C~s 33 (37)
T PF12172_consen 16 DCGRVQFP--------PRPVCPHCGS 33 (37)
T ss_dssp TT--EEES----------SEETTTT-
T ss_pred CCCCEecC--------CCcCCCCcCc
Confidence 47777554 3466888854
No 339
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=24.34 E-value=1.5e+02 Score=20.40 Aligned_cols=9 Identities=11% Similarity=0.150 Sum_probs=4.1
Q ss_pred CCccHHHHH
Q 038049 2 ADLNIMVIV 10 (141)
Q Consensus 2 ~~~~~~~i~ 10 (141)
|+.+..+++
T Consensus 20 f~~n~~~~~ 28 (184)
T CHL00019 20 FGFNTDILE 28 (184)
T ss_pred cCCcchHHH
Confidence 455544433
No 340
>PF11084 DUF2621: Protein of unknown function (DUF2621); InterPro: IPR020203 This entry represents a group of uncharacterised proteins.
Probab=24.29 E-value=2.2e+02 Score=18.83 Aligned_cols=8 Identities=25% Similarity=0.451 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 038049 11 AAMLCALV 18 (141)
Q Consensus 11 ~~~l~~~~ 18 (141)
++++++++
T Consensus 14 ~~vli~l~ 21 (141)
T PF11084_consen 14 VVVLIGLM 21 (141)
T ss_pred HHHHHHHH
Confidence 33333333
No 341
>PF06170 DUF983: Protein of unknown function (DUF983); InterPro: IPR009325 This family consists of several bacterial proteins of unknown function.
Probab=23.97 E-value=42 Score=20.31 Aligned_cols=20 Identities=20% Similarity=0.509 Sum_probs=15.4
Q ss_pred HHHcCCCccccccccccCCC
Q 038049 111 KWLLSHSSCPTCRQRLKPSD 130 (141)
Q Consensus 111 ~wl~~~~~CP~CR~~~~~~~ 130 (141)
.+++....||.|..++...+
T Consensus 3 g~Lk~~~~C~~CG~d~~~~~ 22 (86)
T PF06170_consen 3 GYLKVAPRCPHCGLDYSHAR 22 (86)
T ss_pred ccccCCCcccccCCccccCC
Confidence 45677888999999887554
No 342
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=23.62 E-value=56 Score=23.69 Aligned_cols=22 Identities=18% Similarity=0.534 Sum_probs=14.3
Q ss_pred cHhhHHHHHcCCCccccccccc
Q 038049 105 HVACIDKWLLSHSSCPTCRQRL 126 (141)
Q Consensus 105 h~~Ci~~wl~~~~~CP~CR~~~ 126 (141)
|..|-+.-=++-..||+|.+--
T Consensus 197 C~sC~qqIHRNAPiCPlCK~Ks 218 (230)
T PF10146_consen 197 CQSCHQQIHRNAPICPLCKAKS 218 (230)
T ss_pred hHhHHHHHhcCCCCCccccccc
Confidence 4555555434568899998743
No 343
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=23.60 E-value=1.9e+02 Score=18.23 Aligned_cols=11 Identities=0% Similarity=0.081 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 038049 6 IMVIVAAMLCA 16 (141)
Q Consensus 6 ~~~i~~~~l~~ 16 (141)
+++++...+..
T Consensus 68 F~L~~~~ti~l 78 (103)
T PF12955_consen 68 FWLFAGFTIAL 78 (103)
T ss_pred hhHHHHHHHHH
Confidence 33343333333
No 344
>PF12773 DZR: Double zinc ribbon
Probab=23.50 E-value=69 Score=16.67 Aligned_cols=11 Identities=27% Similarity=0.757 Sum_probs=6.2
Q ss_pred Ccccccccccc
Q 038049 117 SSCPTCRQRLK 127 (141)
Q Consensus 117 ~~CP~CR~~~~ 127 (141)
..||.|.+.+.
T Consensus 30 ~~C~~Cg~~~~ 40 (50)
T PF12773_consen 30 KICPNCGAENP 40 (50)
T ss_pred CCCcCCcCCCc
Confidence 44666666543
No 345
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=23.10 E-value=57 Score=21.39 Aligned_cols=29 Identities=17% Similarity=0.169 Sum_probs=14.3
Q ss_pred ccccccccccccCC-ceeecCCCCCcccHh
Q 038049 79 AGCAICLLDFIDGD-EIRLLPKCNHRFHVA 107 (141)
Q Consensus 79 ~~C~ICl~~~~~~~-~v~~lp~C~H~Fh~~ 107 (141)
..|+-|-..|.+-. ...+.|.||..|...
T Consensus 10 r~Cp~cg~kFYDLnk~p~vcP~cg~~~~~~ 39 (129)
T TIGR02300 10 RICPNTGSKFYDLNRRPAVSPYTGEQFPPE 39 (129)
T ss_pred ccCCCcCccccccCCCCccCCCcCCccCcc
Confidence 55666665554321 223444555555543
No 346
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=22.95 E-value=48 Score=26.63 Aligned_cols=49 Identities=20% Similarity=0.480 Sum_probs=29.5
Q ss_pred cccccccc-cccccCCceeecCCCCCcccHhhHHHHHcCC--------Cccccccccc
Q 038049 78 SAGCAICL-LDFIDGDEIRLLPKCNHRFHVACIDKWLLSH--------SSCPTCRQRL 126 (141)
Q Consensus 78 ~~~C~ICl-~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~--------~~CP~CR~~~ 126 (141)
...|++|. ........+.....|+--||..|-+...... -.|=+|+...
T Consensus 168 n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~ 225 (464)
T KOG4323|consen 168 NLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGP 225 (464)
T ss_pred cceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccch
Confidence 34599997 3333333333333577889999987654321 1388887644
No 347
>PF12088 DUF3565: Protein of unknown function (DUF3565); InterPro: IPR021948 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 30 to 78 amino acids in length. This protein has two conserved sequence motifs: WVA and CGH.
Probab=22.83 E-value=59 Score=18.33 Aligned_cols=16 Identities=38% Similarity=0.709 Sum_probs=12.3
Q ss_pred cCCceeecCCCCCcccH
Q 038049 90 DGDEIRLLPKCNHRFHV 106 (141)
Q Consensus 90 ~~~~v~~lp~C~H~Fh~ 106 (141)
+++.|..|. |||.=|.
T Consensus 8 e~hWVA~L~-CGH~QHv 23 (61)
T PF12088_consen 8 EGHWVAELS-CGHTQHV 23 (61)
T ss_pred cCCEEEEec-ccccccc
Confidence 456788997 9987774
No 348
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=22.81 E-value=24 Score=19.97 Aligned_cols=11 Identities=27% Similarity=0.827 Sum_probs=8.3
Q ss_pred CCCcccccccc
Q 038049 115 SHSSCPTCRQR 125 (141)
Q Consensus 115 ~~~~CP~CR~~ 125 (141)
....||.|++.
T Consensus 5 ~~~~Cp~C~~a 15 (72)
T TIGR02194 5 SKNNCVQCKMT 15 (72)
T ss_pred eCCCCHHHHHH
Confidence 35779999874
No 349
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=22.66 E-value=2.1e+02 Score=18.47 Aligned_cols=27 Identities=19% Similarity=0.468 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 038049 8 VIVAAMLCALVCALGLHSMLQCVFQCTQRA 37 (141)
Q Consensus 8 ~i~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 37 (141)
++++.+..+.+..++.. ....|+.||.
T Consensus 88 ~VIGGLcaL~LaamGA~---~LLrR~cRr~ 114 (126)
T PF03229_consen 88 LVIGGLCALTLAAMGAG---ALLRRCCRRA 114 (126)
T ss_pred hhhhHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 33444443333333333 3334444443
No 350
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=22.50 E-value=1.7e+02 Score=18.15 Aligned_cols=21 Identities=5% Similarity=-0.001 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 038049 7 MVIVAAMLCALVCALGLHSML 27 (141)
Q Consensus 7 ~~i~~~~l~~~~~~l~~~~~~ 27 (141)
|-=+++++..+++++++.+++
T Consensus 49 WRN~GIli~f~i~f~~~~~~~ 69 (103)
T PF06422_consen 49 WRNFGILIAFWIFFIVLTLLA 69 (103)
T ss_pred hhhHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443
No 351
>PF15298 AJAP1_PANP_C: AJAP1/PANP C-terminus
Probab=22.17 E-value=19 Score=25.38 Aligned_cols=9 Identities=11% Similarity=0.032 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 038049 23 LHSMLQCVF 31 (141)
Q Consensus 23 ~~~~~~~~~ 31 (141)
-.+++.+++
T Consensus 117 TtlvlK~C~ 125 (205)
T PF15298_consen 117 TTLVLKNCC 125 (205)
T ss_pred hhhhhhhhh
Confidence 344444443
No 352
>KOG4430 consensus Topoisomerase I-binding arginine-serine-rich protein [Transcription]
Probab=22.06 E-value=33 Score=28.10 Aligned_cols=52 Identities=13% Similarity=0.243 Sum_probs=43.9
Q ss_pred CCcccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCcccccccccc
Q 038049 76 SASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLK 127 (141)
Q Consensus 76 ~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~ 127 (141)
.....|.+|+.........+.+-.|.|.+...|+..|=.....||.|.+.+.
T Consensus 258 ~~~~~~~~~~~~~~~~eqk~l~~~~~~~~g~tsl~~e~~~~~v~~~~~tk~~ 309 (553)
T KOG4430|consen 258 ENKNACGLCLSEADAKEQKGLEGNNQRQTGATSLMEEEAVESVCPLRVTKVR 309 (553)
T ss_pred hcccchhhchhhHhHHHhhhhhhcccchhhhhhhhhhhhhhhhhhccccccc
Confidence 3456799999888777777777778899999999999888899999998775
No 353
>PF07095 IgaA: Intracellular growth attenuator protein IgaA; InterPro: IPR010771 This family consists of several bacterial intracellular growth attenuator (IgaA) proteins. IgaA is involved in negative control of bacterial proliferation within fibroblasts. IgaA is homologous to the Escherichia coli YrfF and Proteus mirabilis UmoB proteins. Whereas the biological function of YrfF is currently unknown, UmoB has been shown elsewhere to act as a positive regulator of FlhDC, the master regulator of flagella and swarming. FlhDC has been shown to repress cell division during P. mirabilis swarming, suggesting that UmoB could repress cell division via FlhDC. This biological function, if maintained in Salmonella enterica, could sustain a putative negative control of cell division and growth exerted by IgaA in intracellular bacteria [].; GO: 0009276 Gram-negative-bacterium-type cell wall, 0016021 integral to membrane
Probab=22.04 E-value=99 Score=26.23 Aligned_cols=13 Identities=8% Similarity=0.005 Sum_probs=8.3
Q ss_pred CCCcccHhhHHHHH
Q 038049 100 CNHRFHVACIDKWL 113 (141)
Q Consensus 100 C~H~Fh~~Ci~~wl 113 (141)
=||.. .+...+|-
T Consensus 149 NGHsL-~e~~~e~~ 161 (705)
T PF07095_consen 149 NGHSL-KEYRQERR 161 (705)
T ss_pred cchhh-hhhhhhcc
Confidence 57754 67777764
No 354
>PF02148 zf-UBP: Zn-finger in ubiquitin-hydrolases and other protein; InterPro: IPR001607 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents UBP-type zinc finger domains, which display some similarity with the Zn-binding domain of the insulinase family. The UBP-type zinc finger domain is found only in a small subfamily of ubiquitin C-terminal hydrolases (deubiquitinases or UBP) [, ], All members of this subfamily are isopeptidase-T, which are known to cleave isopeptide bonds between ubiquitin moieties. Some of the proteins containing an UBP zinc finger include: Homo sapiens (Human) deubiquitinating enzyme 13 (UBPD) Human deubiquitinating enzyme 5 (UBP5) Dictyostelium discoideum (Slime mold) deubiquitinating enzyme A (UBPA) Saccharomyces cerevisiae (Baker's yeast) deubiquitinating enzyme 8 (UBP8) Yeast deubiquitinating enzyme 14 (UBP14) More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3GV4_A 3PHD_B 3C5K_A 2UZG_A 3IHP_B 2G43_B 2G45_D 2I50_A 3MHH_A 3MHS_A ....
Probab=22.00 E-value=62 Score=18.01 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=13.4
Q ss_pred ccccccccccCCceeecCCCCCcccHh
Q 038049 81 CAICLLDFIDGDEIRLLPKCNHRFHVA 107 (141)
Q Consensus 81 C~ICl~~~~~~~~v~~lp~C~H~Fh~~ 107 (141)
|..|... .++...-|. ||++++.+
T Consensus 1 C~~C~~~--~~~lw~CL~-Cg~~~C~~ 24 (63)
T PF02148_consen 1 CSVCGST--NSNLWLCLT-CGYVGCGR 24 (63)
T ss_dssp -SSSHTC--SSSEEEETT-TS-EEETT
T ss_pred CCCCCCc--CCceEEeCC-CCcccccC
Confidence 5566533 234445665 99999874
No 355
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=21.59 E-value=29 Score=20.55 Aligned_cols=10 Identities=30% Similarity=0.999 Sum_probs=7.9
Q ss_pred CCCccccccc
Q 038049 115 SHSSCPTCRQ 124 (141)
Q Consensus 115 ~~~~CP~CR~ 124 (141)
.+..||.|++
T Consensus 6 s~~~Cp~C~~ 15 (86)
T TIGR02183 6 GRPGCPYCVR 15 (86)
T ss_pred eCCCCccHHH
Confidence 3578999986
No 356
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=21.46 E-value=60 Score=23.62 Aligned_cols=22 Identities=18% Similarity=0.644 Sum_probs=13.6
Q ss_pred HhhHHHHHcCCCcccccccccc
Q 038049 106 VACIDKWLLSHSSCPTCRQRLK 127 (141)
Q Consensus 106 ~~Ci~~wl~~~~~CP~CR~~~~ 127 (141)
..|-..--++-..||+|++--.
T Consensus 253 lsChqqIHRNAPiCPlCKaKsR 274 (286)
T KOG4451|consen 253 LSCHQQIHRNAPICPLCKAKSR 274 (286)
T ss_pred HHHHHHHhcCCCCCcchhhccc
Confidence 4444444345688999987443
No 357
>PF06084 Cytomega_TRL10: Cytomegalovirus TRL10 protein; InterPro: IPR009284 This family consists of several Cytomegalovirus TRL10 proteins. TRL10 represents a structural component of the virus particle and like the other HCMV envelope glycoproteins, is present in a disulphide-linked complex [].
Probab=21.35 E-value=55 Score=21.04 Aligned_cols=16 Identities=13% Similarity=0.085 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHhccc
Q 038049 21 LGLHSMLQCVFQCTQR 36 (141)
Q Consensus 21 l~~~~~~~~~~~~~~~ 36 (141)
+++++++++.++-+.+
T Consensus 69 liillviffviy~re~ 84 (150)
T PF06084_consen 69 LIILLVIFFVIYSREE 84 (150)
T ss_pred HHHHHHHhheeEeccc
Confidence 3333344444443333
No 358
>KOG4684 consensus Uncharacterized conserved protein, contains C4-type Zn-finger [General function prediction only]
Probab=21.21 E-value=51 Score=23.77 Aligned_cols=9 Identities=44% Similarity=1.309 Sum_probs=7.2
Q ss_pred Ccccccccc
Q 038049 117 SSCPTCRQR 125 (141)
Q Consensus 117 ~~CP~CR~~ 125 (141)
..||.||+-
T Consensus 190 ArCPHCrKv 198 (275)
T KOG4684|consen 190 ARCPHCRKV 198 (275)
T ss_pred hcCCcccch
Confidence 569999983
No 359
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=20.80 E-value=37 Score=15.26 Aligned_cols=9 Identities=33% Similarity=1.316 Sum_probs=5.7
Q ss_pred ccccccccc
Q 038049 118 SCPTCRQRL 126 (141)
Q Consensus 118 ~CP~CR~~~ 126 (141)
.||.|.+.+
T Consensus 4 ~C~~CgR~F 12 (25)
T PF13913_consen 4 PCPICGRKF 12 (25)
T ss_pred cCCCCCCEE
Confidence 467776655
No 360
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=20.62 E-value=59 Score=17.88 Aligned_cols=8 Identities=38% Similarity=1.057 Sum_probs=3.9
Q ss_pred cccccccc
Q 038049 119 CPTCRQRL 126 (141)
Q Consensus 119 CP~CR~~~ 126 (141)
||.|.+.+
T Consensus 25 Cp~CGael 32 (54)
T TIGR01206 25 CDECGAEL 32 (54)
T ss_pred CCCCCCEE
Confidence 55555443
No 361
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=20.59 E-value=44 Score=17.77 Aligned_cols=12 Identities=17% Similarity=0.498 Sum_probs=8.1
Q ss_pred cccccccccccC
Q 038049 80 GCAICLLDFIDG 91 (141)
Q Consensus 80 ~C~ICl~~~~~~ 91 (141)
.|.+|.-.|.+.
T Consensus 3 ~C~~CgyvYd~~ 14 (47)
T PF00301_consen 3 QCPVCGYVYDPE 14 (47)
T ss_dssp EETTTSBEEETT
T ss_pred CCCCCCEEEcCC
Confidence 578887766544
No 362
>KOG4482 consensus Sarcoglycan complex, alpha/epsilon subunits [Function unknown]
Probab=20.19 E-value=2.3e+02 Score=22.36 Aligned_cols=26 Identities=12% Similarity=0.083 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038049 7 MVIVAAMLCALVCALGLHSMLQCVFQ 32 (141)
Q Consensus 7 ~~i~~~~l~~~~~~l~~~~~~~~~~~ 32 (141)
.+.+++.+.+.+++++++.++.|+.|
T Consensus 298 ~~tfaIpl~Valll~~~La~imc~rr 323 (449)
T KOG4482|consen 298 LHTFAIPLGVALLLVLALAYIMCCRR 323 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34444444444444444444444433
No 363
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=20.08 E-value=45 Score=13.71 Aligned_cols=9 Identities=33% Similarity=1.294 Sum_probs=4.0
Q ss_pred ccccccccc
Q 038049 119 CPTCRQRLK 127 (141)
Q Consensus 119 CP~CR~~~~ 127 (141)
||.|...+.
T Consensus 3 C~~C~~~~~ 11 (24)
T PF13894_consen 3 CPICGKSFR 11 (24)
T ss_dssp -SSTS-EES
T ss_pred CcCCCCcCC
Confidence 666655444
No 364
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=20.05 E-value=61 Score=18.22 Aligned_cols=17 Identities=24% Similarity=0.806 Sum_probs=12.6
Q ss_pred CCccccccccccCCCCC
Q 038049 116 HSSCPTCRQRLKPSDAM 132 (141)
Q Consensus 116 ~~~CP~CR~~~~~~~~~ 132 (141)
++-||+|-+++++.+..
T Consensus 8 H~HC~VCg~aIp~de~~ 24 (64)
T COG4068 8 HRHCVVCGKAIPPDEQV 24 (64)
T ss_pred CccccccCCcCCCccch
Confidence 56699999888766543
No 365
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=20.03 E-value=51 Score=20.31 Aligned_cols=27 Identities=26% Similarity=0.613 Sum_probs=16.3
Q ss_pred CCCCcccHhhHHHHHcCCCccccccccccCC
Q 038049 99 KCNHRFHVACIDKWLLSHSSCPTCRQRLKPS 129 (141)
Q Consensus 99 ~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~ 129 (141)
.||-.|-.+= ++.-+.||-|...-.+.
T Consensus 63 kCGfef~~~~----ik~pSRCP~CKSE~Ie~ 89 (97)
T COG3357 63 KCGFEFRDDK----IKKPSRCPKCKSEWIEE 89 (97)
T ss_pred ccCccccccc----cCCcccCCcchhhcccC
Confidence 3776666521 23346799998765544
Done!