Query 038049
Match_columns 141
No_of_seqs 134 out of 1880
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 11:44:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038049.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038049hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.8 2.6E-21 8.8E-26 119.2 5.9 78 49-128 12-89 (91)
2 1x4j_A Ring finger protein 38; 99.8 4.9E-21 1.7E-25 113.9 3.0 70 58-130 5-74 (75)
3 2kiz_A E3 ubiquitin-protein li 99.8 2E-19 6.8E-24 105.2 5.8 57 74-131 10-66 (69)
4 2ect_A Ring finger protein 126 99.8 2.3E-19 7.8E-24 107.3 5.3 61 74-135 11-71 (78)
5 1iym_A EL5; ring-H2 finger, ub 99.8 1.5E-19 5.1E-24 101.1 3.5 51 77-127 4-54 (55)
6 2ep4_A Ring finger protein 24; 99.8 4.5E-19 1.5E-23 105.0 5.5 58 75-133 12-69 (74)
7 2ecl_A Ring-box protein 2; RNF 99.7 1.3E-18 4.5E-23 104.8 3.8 53 77-129 14-77 (81)
8 3ng2_A RNF4, snurf, ring finge 99.7 4.9E-18 1.7E-22 99.6 3.9 57 75-132 7-67 (71)
9 2ecm_A Ring finger and CHY zin 99.7 7.3E-18 2.5E-22 94.1 3.7 51 76-127 3-54 (55)
10 2ea6_A Ring finger protein 4; 99.7 1.3E-17 4.4E-22 97.2 4.0 53 75-128 12-68 (69)
11 1v87_A Deltex protein 2; ring- 99.7 2.5E-17 8.6E-22 105.1 5.2 53 78-131 25-97 (114)
12 2xeu_A Ring finger protein 4; 99.7 1.5E-17 5E-22 95.6 3.0 54 77-131 2-59 (64)
13 2djb_A Polycomb group ring fin 99.7 8.7E-17 3E-21 94.6 5.8 58 75-135 12-69 (72)
14 3dpl_R Ring-box protein 1; ubi 99.7 5.6E-17 1.9E-21 102.2 4.5 50 77-127 36-100 (106)
15 2ecn_A Ring finger protein 141 99.6 6.7E-17 2.3E-21 94.5 3.2 53 75-132 12-64 (70)
16 2d8s_A Cellular modulator of i 99.6 1.7E-16 5.7E-21 95.2 4.5 56 75-132 12-74 (80)
17 2d8t_A Dactylidin, ring finger 99.6 9.7E-17 3.3E-21 94.2 3.3 51 75-129 12-62 (71)
18 1chc_A Equine herpes virus-1 r 99.6 1.8E-16 6E-21 92.2 2.7 49 77-128 4-52 (68)
19 2ecy_A TNF receptor-associated 99.6 7E-16 2.4E-20 89.2 5.2 52 75-130 12-64 (66)
20 2ct2_A Tripartite motif protei 99.6 7.7E-16 2.6E-20 93.7 5.4 54 75-129 12-69 (88)
21 2yur_A Retinoblastoma-binding 99.6 1E-15 3.5E-20 90.5 5.0 53 75-130 12-66 (74)
22 2csy_A Zinc finger protein 183 99.6 7.6E-16 2.6E-20 92.5 4.2 49 75-127 12-60 (81)
23 4a0k_B E3 ubiquitin-protein li 99.6 1.2E-16 4.2E-21 102.1 0.4 51 77-128 47-112 (117)
24 2ysl_A Tripartite motif-contai 99.6 1.3E-15 4.5E-20 89.6 4.9 52 75-130 17-71 (73)
25 1t1h_A Gspef-atpub14, armadill 99.6 1.7E-15 5.7E-20 90.3 4.1 56 75-134 5-61 (78)
26 4ayc_A E3 ubiquitin-protein li 99.6 7.2E-16 2.5E-20 101.6 2.7 49 78-130 53-101 (138)
27 2ecw_A Tripartite motif-contai 99.6 3.5E-15 1.2E-19 90.0 4.8 55 75-133 16-76 (85)
28 2ecv_A Tripartite motif-contai 99.6 4.2E-15 1.4E-19 89.7 5.0 56 75-134 16-77 (85)
29 2egp_A Tripartite motif-contai 99.6 8.1E-16 2.8E-20 91.8 1.7 55 75-133 9-70 (79)
30 4ap4_A E3 ubiquitin ligase RNF 99.6 2.1E-15 7.1E-20 98.2 3.8 55 76-131 5-63 (133)
31 3lrq_A E3 ubiquitin-protein li 99.5 1.1E-15 3.7E-20 95.5 1.5 52 77-131 21-73 (100)
32 1g25_A CDK-activating kinase a 99.5 4.9E-15 1.7E-19 85.3 3.4 55 78-133 3-60 (65)
33 2y43_A E3 ubiquitin-protein li 99.5 2.9E-15 9.8E-20 93.3 2.2 55 77-134 21-75 (99)
34 2ysj_A Tripartite motif-contai 99.5 2E-14 6.8E-19 82.2 5.2 44 75-122 17-63 (63)
35 2ct0_A Non-SMC element 1 homol 99.5 2.4E-14 8.3E-19 84.2 5.5 52 75-129 12-65 (74)
36 3fl2_A E3 ubiquitin-protein li 99.5 1.5E-14 5.1E-19 93.5 3.9 48 77-128 51-99 (124)
37 2ecj_A Tripartite motif-contai 99.5 2.5E-14 8.5E-19 80.3 4.2 44 75-122 12-58 (58)
38 2ckl_A Polycomb group ring fin 99.5 1.9E-14 6.4E-19 90.9 3.8 50 77-129 14-63 (108)
39 3ztg_A E3 ubiquitin-protein li 99.5 3.9E-14 1.3E-18 86.9 5.0 50 75-127 10-61 (92)
40 4ap4_A E3 ubiquitin ligase RNF 99.5 1.4E-14 4.8E-19 94.2 3.0 54 76-130 70-127 (133)
41 1jm7_A BRCA1, breast cancer ty 99.5 3.9E-14 1.3E-18 89.8 3.9 52 78-133 21-75 (112)
42 1rmd_A RAG1; V(D)J recombinati 99.4 1.4E-14 4.8E-19 92.6 1.4 54 77-134 22-76 (116)
43 3hct_A TNF receptor-associated 99.4 2.7E-14 9.2E-19 91.6 2.3 57 74-134 14-71 (118)
44 1z6u_A NP95-like ring finger p 99.4 8.8E-14 3E-18 92.8 3.6 49 77-129 77-126 (150)
45 2ckl_B Ubiquitin ligase protei 99.4 1.1E-13 3.9E-18 93.5 3.8 51 76-129 52-103 (165)
46 3l11_A E3 ubiquitin-protein li 99.4 3.9E-14 1.3E-18 90.4 1.3 50 75-128 12-62 (115)
47 1bor_A Transcription factor PM 99.4 1.1E-13 3.7E-18 77.4 2.3 49 76-131 4-52 (56)
48 1e4u_A Transcriptional repress 99.4 6E-13 2.1E-17 79.2 5.4 55 75-130 8-64 (78)
49 2vje_A E3 ubiquitin-protein li 99.4 1.3E-13 4.4E-18 79.2 2.3 50 75-127 5-56 (64)
50 2kre_A Ubiquitin conjugation f 99.4 1.9E-13 6.3E-18 85.2 3.1 57 76-136 27-83 (100)
51 2kr4_A Ubiquitin conjugation f 99.4 2.5E-13 8.6E-18 82.2 3.5 57 76-136 12-68 (85)
52 2vje_B MDM4 protein; proto-onc 99.4 1.7E-13 5.9E-18 78.4 2.3 51 75-127 4-55 (63)
53 1wgm_A Ubiquitin conjugation f 99.4 6.8E-13 2.3E-17 82.3 4.6 57 76-136 20-77 (98)
54 1jm7_B BARD1, BRCA1-associated 99.3 2.8E-13 9.7E-18 86.7 1.8 51 78-134 22-73 (117)
55 2y1n_A E3 ubiquitin-protein li 99.3 7.1E-13 2.4E-17 99.9 3.6 49 78-130 332-381 (389)
56 3knv_A TNF receptor-associated 99.3 5.8E-13 2E-17 87.9 2.5 51 75-129 28-79 (141)
57 4ic3_A E3 ubiquitin-protein li 99.2 1.2E-12 4.1E-17 77.2 1.1 44 77-128 23-67 (74)
58 3k1l_B Fancl; UBC, ring, RWD, 99.2 1.6E-12 5.3E-17 96.0 1.7 55 75-129 305-374 (381)
59 3hcs_A TNF receptor-associated 99.2 1.9E-12 6.6E-17 87.8 1.6 56 75-134 15-71 (170)
60 2yu4_A E3 SUMO-protein ligase 99.2 3.7E-12 1.3E-16 78.5 1.5 57 76-135 5-70 (94)
61 2c2l_A CHIP, carboxy terminus 99.2 1.3E-11 4.4E-16 89.3 3.1 57 75-135 205-262 (281)
62 2ea5_A Cell growth regulator w 99.1 3.1E-11 1.1E-15 69.9 4.0 47 75-129 12-59 (68)
63 1wim_A KIAA0161 protein; ring 99.1 2.8E-11 9.5E-16 74.4 3.4 48 77-125 4-61 (94)
64 1vyx_A ORF K3, K3RING; zinc-bi 99.1 4.6E-11 1.6E-15 67.4 3.7 49 76-128 4-59 (60)
65 2ecg_A Baculoviral IAP repeat- 99.1 1.8E-11 6.3E-16 72.2 2.2 44 78-129 25-69 (75)
66 2f42_A STIP1 homology and U-bo 99.1 4.4E-11 1.5E-15 81.6 3.1 58 75-136 103-161 (179)
67 2yho_A E3 ubiquitin-protein li 99.0 4.6E-11 1.6E-15 71.2 1.0 44 78-129 18-62 (79)
68 3htk_C E3 SUMO-protein ligase 98.9 5E-10 1.7E-14 80.1 1.9 56 76-134 179-238 (267)
69 2bay_A PRE-mRNA splicing facto 98.9 3.3E-10 1.1E-14 64.1 0.6 51 79-133 4-55 (61)
70 3t6p_A Baculoviral IAP repeat- 98.8 4.6E-10 1.6E-14 83.8 0.8 45 77-129 294-339 (345)
71 3vk6_A E3 ubiquitin-protein li 98.7 1.9E-08 6.6E-13 61.4 3.7 47 80-129 3-50 (101)
72 3nw0_A Non-structural maintena 98.5 9.3E-08 3.2E-12 68.0 5.4 50 77-129 179-230 (238)
73 1wil_A KIAA1045 protein; ring 96.9 0.0023 7.8E-08 37.7 5.1 38 73-112 10-47 (89)
74 2lri_C Autoimmune regulator; Z 96.8 0.0014 4.9E-08 37.1 3.8 48 75-126 9-60 (66)
75 2jun_A Midline-1; B-BOX, TRIM, 96.8 0.0008 2.7E-08 41.1 2.8 34 78-112 3-36 (101)
76 2ko5_A Ring finger protein Z; 96.0 0.0056 1.9E-07 36.8 3.1 50 76-130 26-75 (99)
77 2l5u_A Chromodomain-helicase-D 94.9 0.023 7.9E-07 31.4 3.0 47 75-125 8-58 (61)
78 1we9_A PHD finger family prote 94.6 0.0086 2.9E-07 33.4 0.7 50 75-124 3-57 (64)
79 2k16_A Transcription initiatio 93.9 0.021 7.3E-07 32.8 1.4 53 75-128 15-71 (75)
80 1mm2_A MI2-beta; PHD, zinc fin 93.8 0.02 6.9E-07 31.7 1.1 47 75-125 6-56 (61)
81 1fp0_A KAP-1 corepressor; PHD 93.8 0.047 1.6E-06 32.5 2.8 52 75-130 22-77 (88)
82 2cs3_A Protein C14ORF4, MY039 93.8 0.11 3.9E-06 30.2 4.2 60 75-134 12-76 (93)
83 3u5n_A E3 ubiquitin-protein li 93.7 0.016 5.3E-07 40.0 0.6 47 76-126 5-55 (207)
84 1f62_A Transcription factor WS 93.4 0.034 1.2E-06 29.4 1.6 44 80-124 2-49 (51)
85 2yql_A PHD finger protein 21A; 93.4 0.012 4.1E-07 32.0 -0.3 46 75-124 6-55 (56)
86 2l2t_A Receptor tyrosine-prote 93.3 0.34 1.2E-05 24.9 5.2 29 6-34 9-37 (44)
87 2ysm_A Myeloid/lymphoid or mix 93.1 0.029 9.8E-07 34.8 1.1 48 75-123 4-55 (111)
88 3o36_A Transcription intermedi 93.1 0.022 7.6E-07 38.5 0.6 46 77-126 3-52 (184)
89 3lqh_A Histone-lysine N-methyl 93.0 0.036 1.2E-06 37.6 1.5 48 79-126 3-64 (183)
90 3m62_A Ubiquitin conjugation f 92.9 0.063 2.1E-06 45.0 3.1 57 77-137 890-947 (968)
91 2l43_A N-teminal domain from h 92.5 0.058 2E-06 32.1 1.8 56 75-130 22-80 (88)
92 2puy_A PHD finger protein 21A; 92.5 0.013 4.4E-07 32.3 -1.0 49 77-129 4-56 (60)
93 2ku3_A Bromodomain-containing 92.1 0.057 1.9E-06 30.8 1.4 51 75-125 13-66 (71)
94 2e6r_A Jumonji/ARID domain-con 91.7 0.027 9.2E-07 33.9 -0.4 50 75-125 13-66 (92)
95 1wep_A PHF8; structural genomi 91.2 0.25 8.7E-06 28.5 3.6 51 75-126 9-64 (79)
96 3v43_A Histone acetyltransfera 91.1 0.051 1.8E-06 33.7 0.5 45 80-124 63-111 (112)
97 2vpb_A Hpygo1, pygopus homolog 91.1 0.19 6.3E-06 28.1 2.8 36 75-110 5-41 (65)
98 1xwh_A Autoimmune regulator; P 91.0 0.068 2.3E-06 29.9 0.9 46 76-125 6-55 (66)
99 2lv9_A Histone-lysine N-methyl 90.4 0.11 3.7E-06 31.5 1.5 47 76-124 26-75 (98)
100 2klu_A T-cell surface glycopro 89.7 1.4 4.9E-05 24.5 5.5 18 26-43 27-44 (70)
101 2ri7_A Nucleosome-remodeling f 89.6 0.19 6.5E-06 33.4 2.3 50 76-126 6-60 (174)
102 2lbm_A Transcriptional regulat 89.5 0.59 2E-05 30.3 4.5 46 75-124 60-116 (142)
103 2ks1_B Epidermal growth factor 89.2 0.31 1.1E-05 25.0 2.4 21 12-32 16-36 (44)
104 4gne_A Histone-lysine N-methyl 88.8 0.5 1.7E-05 29.1 3.6 49 75-129 12-66 (107)
105 1wen_A Inhibitor of growth fam 88.8 0.5 1.7E-05 26.8 3.4 47 76-127 14-67 (71)
106 2xb1_A Pygopus homolog 2, B-ce 88.8 0.065 2.2E-06 33.0 -0.4 50 79-128 4-64 (105)
107 1wem_A Death associated transc 88.3 0.28 9.6E-06 28.1 2.1 48 78-127 16-72 (76)
108 2yt5_A Metal-response element- 87.6 0.34 1.2E-05 26.8 2.2 53 75-127 3-63 (66)
109 3ql9_A Transcriptional regulat 87.6 1 3.5E-05 28.6 4.6 46 75-124 54-110 (129)
110 2jwa_A Receptor tyrosine-prote 87.3 1.9 6.4E-05 22.0 5.2 7 9-15 14-20 (44)
111 3v43_A Histone acetyltransfera 87.0 1.1 3.7E-05 27.6 4.4 33 78-110 5-42 (112)
112 2ro1_A Transcription intermedi 86.3 0.14 4.7E-06 34.8 -0.0 45 78-126 2-50 (189)
113 1weu_A Inhibitor of growth fam 85.8 0.67 2.3E-05 27.6 2.9 46 77-127 35-87 (91)
114 3shb_A E3 ubiquitin-protein li 85.5 0.1 3.5E-06 30.3 -0.9 44 80-124 28-76 (77)
115 1wee_A PHD finger family prote 85.4 0.25 8.6E-06 28.0 0.8 50 76-126 14-67 (72)
116 2kgg_A Histone demethylase jar 85.3 0.25 8.6E-06 26.1 0.7 44 80-123 4-52 (52)
117 2yw8_A RUN and FYVE domain-con 85.1 0.72 2.5E-05 26.8 2.8 52 76-127 17-74 (82)
118 2knc_A Integrin alpha-IIB; tra 85.1 2.4 8.2E-05 22.6 4.5 23 6-28 13-35 (54)
119 2l8s_A Integrin alpha-1; trans 85.0 3 0.0001 22.2 5.3 25 5-29 9-33 (54)
120 1g47_A Pinch protein; LIM doma 84.8 0.76 2.6E-05 25.8 2.8 43 77-129 10-52 (77)
121 1wfk_A Zinc finger, FYVE domai 84.5 0.95 3.2E-05 26.7 3.1 52 76-127 7-65 (88)
122 1z2q_A LM5-1; membrane protein 84.3 0.85 2.9E-05 26.6 2.8 53 76-128 19-79 (84)
123 1z60_A TFIIH basal transcripti 84.2 0.49 1.7E-05 25.9 1.6 43 79-122 16-58 (59)
124 1weo_A Cellulose synthase, cat 84.1 4.4 0.00015 24.0 5.7 52 77-128 15-70 (93)
125 1wyh_A SLIM 2, skeletal muscle 84.0 0.85 2.9E-05 25.2 2.7 41 79-129 6-46 (72)
126 2cu8_A Cysteine-rich protein 2 83.9 1.3 4.3E-05 24.9 3.4 41 78-129 9-49 (76)
127 1x61_A Thyroid receptor intera 83.7 1.3 4.6E-05 24.4 3.5 39 79-127 6-44 (72)
128 1wew_A DNA-binding family prot 83.6 0.51 1.7E-05 27.2 1.6 50 77-127 15-74 (78)
129 1joc_A EEA1, early endosomal a 83.5 0.74 2.5E-05 29.1 2.5 36 77-112 68-103 (125)
130 3o70_A PHD finger protein 13; 83.0 0.26 8.8E-06 27.7 0.1 49 75-125 16-67 (68)
131 2e6s_A E3 ubiquitin-protein li 82.9 0.21 7E-06 28.9 -0.3 45 79-124 27-76 (77)
132 2kwj_A Zinc finger protein DPF 82.6 0.098 3.4E-06 32.6 -1.9 49 80-129 60-112 (114)
133 1y02_A CARP2, FYVE-ring finger 82.6 0.2 6.7E-06 31.6 -0.5 53 76-128 17-69 (120)
134 3t7l_A Zinc finger FYVE domain 82.5 0.91 3.1E-05 26.9 2.5 51 77-127 19-75 (90)
135 2co8_A NEDD9 interacting prote 82.4 2 6.7E-05 24.6 3.9 43 76-129 13-55 (82)
136 1vfy_A Phosphatidylinositol-3- 82.4 1.1 3.7E-05 25.4 2.7 33 79-111 12-44 (73)
137 1x4l_A Skeletal muscle LIM-pro 82.4 1.5 5E-05 24.3 3.3 42 78-129 5-48 (72)
138 2dj7_A Actin-binding LIM prote 82.2 1.7 5.9E-05 24.8 3.6 42 76-128 13-54 (80)
139 1x4k_A Skeletal muscle LIM-pro 81.6 0.91 3.1E-05 25.1 2.2 41 79-129 6-46 (72)
140 2vnf_A ING 4, P29ING4, inhibit 81.4 0.48 1.6E-05 25.8 0.9 43 77-124 9-58 (60)
141 1wev_A Riken cDNA 1110020M19; 81.4 0.16 5.6E-06 30.1 -1.2 51 77-127 15-74 (88)
142 1x4u_A Zinc finger, FYVE domai 81.3 1.1 3.7E-05 26.1 2.5 36 76-111 12-47 (84)
143 2kwj_A Zinc finger protein DPF 81.3 1.2 4E-05 27.5 2.8 34 79-112 2-41 (114)
144 3asl_A E3 ubiquitin-protein li 80.7 0.28 9.4E-06 27.8 -0.3 44 80-124 20-68 (70)
145 1x63_A Skeletal muscle LIM-pro 79.9 1.6 5.6E-05 24.7 2.9 41 79-129 16-56 (82)
146 1iml_A CRIP, cysteine rich int 79.8 1 3.5E-05 25.3 2.0 8 101-108 20-27 (76)
147 3c6w_A P28ING5, inhibitor of g 79.6 0.68 2.3E-05 25.2 1.1 43 77-124 8-57 (59)
148 3ask_A E3 ubiquitin-protein li 78.7 0.47 1.6E-05 33.1 0.3 45 80-125 176-225 (226)
149 2ysm_A Myeloid/lymphoid or mix 78.5 0.3 1E-05 30.0 -0.7 45 80-125 56-104 (111)
150 2knc_B Integrin beta-3; transm 78.3 2.9 0.0001 24.1 3.6 21 8-28 13-33 (79)
151 1x68_A FHL5 protein; four-and- 78.3 1.8 6.3E-05 24.2 2.8 40 79-128 6-47 (76)
152 2d8v_A Zinc finger FYVE domain 76.7 2.3 7.7E-05 23.7 2.6 33 75-112 5-38 (67)
153 1dvp_A HRS, hepatocyte growth 76.2 1.3 4.6E-05 30.5 2.0 35 78-112 161-195 (220)
154 1zfo_A LAsp-1; LIM domain, zin 76.0 0.79 2.7E-05 21.4 0.6 28 79-109 4-31 (31)
155 3kqi_A GRC5, PHD finger protei 75.9 1.2 4E-05 25.3 1.4 48 79-127 11-63 (75)
156 1a7i_A QCRP2 (LIM1); LIM domai 75.9 1.1 3.8E-05 25.5 1.4 41 78-129 7-47 (81)
157 3zyq_A Hepatocyte growth facto 75.8 2.6 8.7E-05 29.3 3.4 50 78-127 164-221 (226)
158 2a20_A Regulating synaptic mem 75.8 0.26 8.8E-06 26.9 -1.3 38 74-112 5-43 (62)
159 2cor_A Pinch protein; LIM doma 75.0 4.4 0.00015 22.8 3.8 41 77-129 14-54 (79)
160 2g6q_A Inhibitor of growth pro 74.4 0.79 2.7E-05 25.2 0.4 43 77-124 10-59 (62)
161 1zbd_B Rabphilin-3A; G protein 72.9 1.8 6E-05 27.7 1.8 34 76-110 53-88 (134)
162 2ehe_A Four and A half LIM dom 72.9 2.9 0.0001 23.6 2.7 41 79-129 16-56 (82)
163 3f6q_B LIM and senescent cell 72.9 2.1 7.2E-05 23.4 2.0 42 78-129 11-52 (72)
164 2d8y_A Eplin protein; LIM doma 72.7 5.1 0.00017 23.2 3.8 41 78-129 15-55 (91)
165 1x62_A C-terminal LIM domain p 72.6 3.7 0.00013 23.1 3.1 39 77-127 14-52 (79)
166 2k1a_A Integrin alpha-IIB; sin 72.2 4.4 0.00015 20.4 2.9 13 6-18 10-22 (42)
167 2gmg_A Hypothetical protein PF 72.1 0.89 3E-05 27.8 0.3 27 99-130 72-98 (105)
168 2d8z_A Four and A half LIM dom 71.8 4.5 0.00015 22.0 3.3 39 79-129 6-44 (70)
169 1x64_A Alpha-actinin-2 associa 70.5 7 0.00024 22.4 4.0 42 76-129 23-64 (89)
170 2jp3_A FXYD domain-containing 70.2 6.5 0.00022 21.8 3.5 29 7-35 17-45 (67)
171 3a1b_A DNA (cytosine-5)-methyl 70.0 5.3 0.00018 26.3 3.6 37 75-115 76-114 (159)
172 2egq_A FHL1 protein; LIM domai 69.3 3.4 0.00011 23.0 2.4 41 79-129 16-59 (77)
173 2l3k_A Rhombotin-2, linker, LI 69.2 3.2 0.00011 25.7 2.4 9 81-89 11-19 (123)
174 2rsd_A E3 SUMO-protein ligase 68.8 0.6 2.1E-05 26.1 -1.0 49 76-125 8-65 (68)
175 2d8x_A Protein pinch; LIM doma 68.7 3.6 0.00012 22.4 2.4 40 78-129 5-44 (70)
176 2jvx_A NF-kappa-B essential mo 68.5 1.4 4.6E-05 20.3 0.4 13 116-128 3-15 (28)
177 2cup_A Skeletal muscle LIM-pro 68.5 4.5 0.00015 23.8 2.9 45 80-129 35-79 (101)
178 1nyp_A Pinch protein; LIM doma 68.5 3.9 0.00013 22.0 2.5 39 79-129 6-44 (66)
179 2k1k_A Ephrin type-A receptor 68.4 8.9 0.0003 18.7 4.6 10 9-18 13-22 (38)
180 2o35_A Hypothetical protein DU 68.4 2.1 7E-05 25.9 1.3 11 104-114 43-53 (105)
181 2zet_C Melanophilin; complex, 68.2 4.3 0.00015 26.5 2.9 48 75-124 65-116 (153)
182 3fyb_A Protein of unknown func 68.2 2.1 7.1E-05 25.8 1.3 11 104-114 42-52 (104)
183 3mpx_A FYVE, rhogef and PH dom 67.8 1.1 3.7E-05 33.8 0.0 50 77-126 374-430 (434)
184 2dar_A PDZ and LIM domain prot 66.8 4.9 0.00017 23.2 2.8 41 77-129 24-64 (90)
185 3i2d_A E3 SUMO-protein ligase 66.4 3.7 0.00013 30.8 2.6 49 79-130 250-302 (371)
186 2iyb_E Testin, TESS, TES; LIM 66.3 4 0.00014 22.0 2.2 41 79-129 3-45 (65)
187 2jo1_A Phospholemman; FXYD1, N 64.9 16 0.00055 20.4 5.2 34 3-36 12-45 (72)
188 4fo9_A E3 SUMO-protein ligase 64.8 4.1 0.00014 30.4 2.6 49 79-130 216-268 (360)
189 2jmi_A Protein YNG1, ING1 homo 64.8 1.3 4.6E-05 26.3 -0.0 44 76-124 24-75 (90)
190 2cur_A Skeletal muscle LIM-pro 64.6 4.6 0.00016 21.9 2.3 38 79-128 6-43 (69)
191 1wd2_A Ariadne-1 protein homol 64.2 0.68 2.3E-05 25.3 -1.3 36 79-114 7-46 (60)
192 3mjh_B Early endosome antigen 63.8 0.98 3.4E-05 21.8 -0.6 14 79-92 6-19 (34)
193 2l4z_A DNA endonuclease RBBP8, 63.5 7.6 0.00026 24.1 3.3 39 78-127 61-99 (123)
194 1v6g_A Actin binding LIM prote 63.0 5.8 0.0002 22.3 2.5 38 79-128 16-53 (81)
195 2rgt_A Fusion of LIM/homeobox 62.7 4.3 0.00015 26.5 2.2 39 79-127 66-104 (169)
196 2jne_A Hypothetical protein YF 61.9 3 0.0001 25.1 1.1 40 79-127 33-72 (101)
197 3o7a_A PHD finger protein 13 v 61.6 1.2 4.2E-05 23.3 -0.6 42 83-125 8-52 (52)
198 2pv0_B DNA (cytosine-5)-methyl 61.5 7.8 0.00027 29.2 3.6 37 75-115 90-128 (386)
199 1wig_A KIAA1808 protein; LIM d 60.0 8.6 0.00029 21.2 2.9 37 79-127 6-42 (73)
200 1x6a_A LIMK-2, LIM domain kina 59.5 7.8 0.00027 21.7 2.7 38 79-128 16-53 (81)
201 1rut_X Flinc4, fusion protein 58.4 7.5 0.00026 25.8 2.8 38 80-127 71-108 (188)
202 2cuq_A Four and A half LIM dom 58.4 7.9 0.00027 21.6 2.6 38 79-128 16-53 (80)
203 4bbq_A Lysine-specific demethy 58.1 0.88 3E-05 28.1 -1.8 44 81-124 62-113 (117)
204 1wvk_A AT2G23090/F21P24.15; st 57.9 2.1 7.2E-05 25.2 -0.0 14 75-88 42-55 (86)
205 2jmo_A Parkin; IBR, E3 ligase, 56.3 0.72 2.5E-05 26.7 -2.2 14 99-112 55-68 (80)
206 1b8t_A Protein (CRP1); LIM dom 54.4 8.9 0.00031 25.5 2.7 40 78-128 115-154 (192)
207 1x3h_A Leupaxin; paxillin fami 53.7 7.2 0.00025 21.7 1.9 39 79-129 16-54 (80)
208 2jtn_A LIM domain-binding prot 53.6 5.3 0.00018 26.4 1.4 44 79-128 88-131 (182)
209 2lcq_A Putative toxin VAPC6; P 53.4 3.4 0.00012 27.0 0.4 24 98-127 136-159 (165)
210 2l34_A TYRO protein tyrosine k 53.1 18 0.0006 17.1 3.6 25 5-29 5-29 (33)
211 2k9j_B Integrin beta-3; transm 53.0 21 0.00071 17.9 4.0 18 11-28 15-32 (43)
212 2jrp_A Putative cytoplasmic pr 52.9 6.1 0.00021 22.9 1.4 11 80-90 4-14 (81)
213 2dlo_A Thyroid receptor-intera 52.8 7.7 0.00026 21.8 1.9 40 78-129 15-54 (81)
214 2zxe_G FXYD10, phospholemman-l 52.7 8.1 0.00028 21.9 1.8 23 6-28 18-40 (74)
215 2xjy_A Rhombotin-2; oncoprotei 52.0 13 0.00046 22.8 3.1 37 80-126 68-104 (131)
216 1m3v_A FLIN4, fusion of the LI 50.2 11 0.00037 23.1 2.4 48 80-129 34-82 (122)
217 1j2o_A FLIN2, fusion of rhombo 49.9 11 0.00036 22.8 2.3 10 80-89 5-14 (114)
218 2xqn_T Testin, TESS; metal-bin 47.1 12 0.00042 22.8 2.3 27 80-108 65-93 (126)
219 3kv5_D JMJC domain-containing 46.3 5 0.00017 31.2 0.4 49 76-125 35-88 (488)
220 2ct7_A Ring finger protein 31; 45.1 1.8 6.2E-05 25.2 -1.8 28 95-122 44-73 (86)
221 2kpi_A Uncharacterized protein 44.7 9.4 0.00032 20.3 1.2 12 79-90 11-22 (56)
222 1afo_A Glycophorin A; integral 41.8 32 0.0011 16.9 4.4 13 20-32 23-35 (40)
223 2pk7_A Uncharacterized protein 39.7 5.2 0.00018 22.4 -0.3 15 113-127 5-19 (69)
224 2jny_A Uncharacterized BCR; st 37.3 5.2 0.00018 22.3 -0.6 16 112-127 6-21 (67)
225 1l8d_A DNA double-strand break 35.0 9.9 0.00034 22.9 0.4 12 116-127 47-58 (112)
226 3kv4_A PHD finger protein 8; e 33.7 8.2 0.00028 29.7 -0.2 49 79-127 5-58 (447)
227 1x4i_A Inhibitor of growth pro 32.7 22 0.00077 19.7 1.6 45 79-126 7-56 (70)
228 3vhs_A ATPase wrnip1; zinc fin 32.5 11 0.00037 16.7 0.2 10 118-127 8-17 (29)
229 2fiy_A Protein FDHE homolog; F 31.4 3.2 0.00011 30.3 -2.6 48 76-125 180-231 (309)
230 3pwf_A Rubrerythrin; non heme 30.9 25 0.00086 23.1 1.9 20 99-125 143-162 (170)
231 2ffw_A Midline-1; B-BOX, ring 29.9 76 0.0026 17.7 3.7 35 76-111 28-62 (78)
232 2roo_A Neurotoxin MAGI-4; spid 29.8 1.9 6.5E-05 21.4 -2.8 16 106-121 18-33 (43)
233 2csz_A Synaptotagmin-like prot 28.8 29 0.00099 19.8 1.6 35 74-108 21-56 (76)
234 1r79_A Diacylglycerol kinase, 28.0 69 0.0024 18.4 3.2 40 78-121 38-80 (84)
235 2k21_A Potassium voltage-gated 27.9 1.2E+02 0.004 19.1 4.6 12 6-17 54-65 (138)
236 2jr6_A UPF0434 protein NMA0874 27.5 5.3 0.00018 22.3 -1.6 9 118-126 10-18 (68)
237 1qdp_A Robustoxin; neurotoxin, 27.1 1.9 6.6E-05 21.3 -3.0 15 106-120 18-32 (42)
238 1yuz_A Nigerythrin; rubrythrin 26.5 38 0.0013 22.9 2.3 20 99-125 176-195 (202)
239 3mkr_B Coatomer subunit alpha; 26.1 94 0.0032 22.7 4.3 42 78-125 262-303 (320)
240 2js4_A UPF0434 protein BB2007; 25.0 5.6 0.00019 22.3 -1.8 14 119-132 29-42 (70)
241 1lv3_A Hypothetical protein YA 24.8 18 0.00063 20.1 0.3 11 117-127 10-20 (68)
242 3c5k_A HD6, histone deacetylas 24.0 77 0.0026 19.1 3.1 24 78-105 24-47 (109)
243 2hf1_A Tetraacyldisaccharide-1 24.0 5.3 0.00018 22.3 -2.0 16 119-134 29-44 (68)
244 2akl_A PHNA-like protein PA012 23.9 23 0.0008 22.4 0.7 26 79-104 28-54 (138)
245 3mv2_A Coatomer subunit alpha; 23.6 1E+02 0.0034 22.7 4.1 43 77-125 270-312 (325)
246 2yqp_A Probable ATP-dependent 23.1 52 0.0018 17.6 1.9 22 64-85 5-26 (60)
247 1pft_A TFIIB, PFTFIIBN; N-term 22.6 84 0.0029 15.7 2.7 8 79-86 6-13 (50)
248 4esj_A Type-2 restriction enzy 21.5 20 0.00067 25.3 -0.0 15 110-124 28-42 (257)
249 6rxn_A Rubredoxin; electron tr 21.3 28 0.00095 17.7 0.6 8 118-125 32-39 (46)
250 2lq6_A Bromodomain-containing 21.2 31 0.0011 20.0 0.8 33 79-112 18-51 (87)
251 2ctu_A Zinc finger protein 483 20.7 47 0.0016 17.1 1.5 36 79-131 19-54 (73)
252 2ll1_A U1-TRTX-SP1A; toxin; NM 20.1 18 0.00062 16.4 -0.3 8 100-108 2-9 (33)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.84 E-value=2.6e-21 Score=119.23 Aligned_cols=78 Identities=29% Similarity=0.714 Sum_probs=67.5
Q ss_pred hhcCCCCHHHHhhCCceeecCCCCCCCCCcccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccC
Q 038049 49 RLNSGLKRKEMVALPTVTYANSGSSPSSASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKP 128 (141)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~ 128 (141)
....+.+++.++.+|...+..... ..+++.+|+||+++|..++.++.+| |||.||..||..|+..+.+||+||+++..
T Consensus 12 ~~~~~~s~~~i~~lp~~~~~~~~~-~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 12 VANPPASKESIDALPEILVTEDHG-AVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SCCCCCCHHHHHTSCEEECCTTCS-SSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred cCCCCCCHHHHHhCCCeeeccccc-ccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 446778999999999998876543 3455678999999999999899999 99999999999999999999999998865
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=4.9e-21 Score=113.89 Aligned_cols=70 Identities=37% Similarity=0.870 Sum_probs=58.4
Q ss_pred HHhhCCceeecCCCCCCCCCcccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccCCC
Q 038049 58 EMVALPTVTYANSGSSPSSASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKPSD 130 (141)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~~ 130 (141)
.++.+|..++.... ...++.+|+||++++..++.++.+| |||.||.+||..|+..+.+||+||+++....
T Consensus 5 ~i~~lp~~~~~~~~--~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~ 74 (75)
T 1x4j_A 5 SSGQLPSYRFNPNN--HQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPSS 74 (75)
T ss_dssp CCSSCCCEEBCSSS--CSSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCCC
T ss_pred hHhhCCcEEecCcc--ccCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCCC
Confidence 34567777776532 2345578999999999999999999 9999999999999999999999999987654
No 3
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.78 E-value=2e-19 Score=105.15 Aligned_cols=57 Identities=35% Similarity=0.934 Sum_probs=50.2
Q ss_pred CCCCcccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccCCCC
Q 038049 74 PSSASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKPSDA 131 (141)
Q Consensus 74 ~~~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~~~ 131 (141)
....+.+|+||++.+..++.+..+| |||.||..||..|+..+.+||+||+.+.....
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQLP 66 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSCCC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCcCC
Confidence 3455678999999998888889998 99999999999999999999999999876544
No 4
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.78 E-value=2.3e-19 Score=107.32 Aligned_cols=61 Identities=38% Similarity=0.865 Sum_probs=53.4
Q ss_pred CCCCcccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccCCCCCCCc
Q 038049 74 PSSASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKPSDAMPSL 135 (141)
Q Consensus 74 ~~~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~~~~~~~ 135 (141)
...++.+|+||++.|..++.+..++ |||.||..||..|+..+.+||+||+.+......++.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 71 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATNP 71 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCCCC
T ss_pred cCCCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCcccCCCC
Confidence 3455678999999999988888898 999999999999999999999999999877666543
No 5
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.77 E-value=1.5e-19 Score=101.11 Aligned_cols=51 Identities=49% Similarity=1.152 Sum_probs=46.1
Q ss_pred CcccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCcccccccccc
Q 038049 77 ASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLK 127 (141)
Q Consensus 77 ~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~ 127 (141)
++.+|+||++++.+++.+..++.|||.||.+||..|+.++.+||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 457899999999998888888779999999999999999999999999864
No 6
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=4.5e-19 Score=104.99 Aligned_cols=58 Identities=34% Similarity=0.767 Sum_probs=50.7
Q ss_pred CCCcccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccCCCCCC
Q 038049 75 SSASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKPSDAMP 133 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~~~~~ 133 (141)
...+.+|+||++++..++.+..+| |||.||.+||..|+..+.+||+||+++.......
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 69 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQLS 69 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCSCC
T ss_pred CCCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCcccccccccC
Confidence 344678999999999998888898 9999999999999999999999999997655443
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.3e-18 Score=104.84 Aligned_cols=53 Identities=32% Similarity=0.809 Sum_probs=42.7
Q ss_pred Cccccccccccccc-----------CCceeecCCCCCcccHhhHHHHHcCCCccccccccccCC
Q 038049 77 ASAGCAICLLDFID-----------GDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKPS 129 (141)
Q Consensus 77 ~~~~C~ICl~~~~~-----------~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~ 129 (141)
++.+|+||+++|.+ ++.++.++.|||.||.+||+.|+.++.+||+||+++..+
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 44668888888854 344556656999999999999999999999999987643
No 8
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.71 E-value=4.9e-18 Score=99.58 Aligned_cols=57 Identities=26% Similarity=0.612 Sum_probs=47.9
Q ss_pred CCCcccccccccccccC----CceeecCCCCCcccHhhHHHHHcCCCccccccccccCCCCC
Q 038049 75 SSASAGCAICLLDFIDG----DEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKPSDAM 132 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~----~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~~~~ 132 (141)
..++.+|+||++.+.++ +.+..++ |||.||.+||..|+.++.+||+||+++..++..
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 67 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRYH 67 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChhhee
Confidence 34557899999999764 4456777 999999999999999999999999999876654
No 9
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.70 E-value=7.3e-18 Score=94.11 Aligned_cols=51 Identities=35% Similarity=0.757 Sum_probs=43.5
Q ss_pred CCcccccccccccccCC-ceeecCCCCCcccHhhHHHHHcCCCcccccccccc
Q 038049 76 SASAGCAICLLDFIDGD-EIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLK 127 (141)
Q Consensus 76 ~~~~~C~ICl~~~~~~~-~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~ 127 (141)
.++.+|+||++++.+++ .+..++ |||.||.+||..|+..+.+||+||+++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 34578999999996644 467777 9999999999999999999999999874
No 10
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.3e-17 Score=97.19 Aligned_cols=53 Identities=28% Similarity=0.681 Sum_probs=44.9
Q ss_pred CCCcccccccccccccC----CceeecCCCCCcccHhhHHHHHcCCCccccccccccC
Q 038049 75 SSASAGCAICLLDFIDG----DEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKP 128 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~----~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~ 128 (141)
..+..+|+||++.+.++ +.+..++ |||.||.+||..|+..+.+||+||+++..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 44567899999999764 3446777 99999999999999999999999998864
No 11
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.69 E-value=2.5e-17 Score=105.11 Aligned_cols=53 Identities=25% Similarity=0.583 Sum_probs=43.3
Q ss_pred cccccccccccccCC---------------ceeecCCCCCcccHhhHHHHH-----cCCCccccccccccCCCC
Q 038049 78 SAGCAICLLDFIDGD---------------EIRLLPKCNHRFHVACIDKWL-----LSHSSCPTCRQRLKPSDA 131 (141)
Q Consensus 78 ~~~C~ICl~~~~~~~---------------~v~~lp~C~H~Fh~~Ci~~wl-----~~~~~CP~CR~~~~~~~~ 131 (141)
+.+|+||+++|..+. .+..++ |||.||.+||..|+ ..+.+||+||+.+..+.+
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g 97 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTG 97 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCC
Confidence 368999999997653 344677 99999999999999 456789999999976653
No 12
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.68 E-value=1.5e-17 Score=95.55 Aligned_cols=54 Identities=28% Similarity=0.632 Sum_probs=45.7
Q ss_pred CcccccccccccccC----CceeecCCCCCcccHhhHHHHHcCCCccccccccccCCCC
Q 038049 77 ASAGCAICLLDFIDG----DEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKPSDA 131 (141)
Q Consensus 77 ~~~~C~ICl~~~~~~----~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~~~ 131 (141)
++.+|+||++.+.++ +.+..++ |||.||.+|+..|+.++.+||+||+++..++.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 59 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 59 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCE
T ss_pred CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCccce
Confidence 346899999999764 4456777 99999999999999999999999999887653
No 13
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=8.7e-17 Score=94.61 Aligned_cols=58 Identities=22% Similarity=0.521 Sum_probs=47.9
Q ss_pred CCCcccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccCCCCCCCc
Q 038049 75 SSASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKPSDAMPSL 135 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~~~~~~~ 135 (141)
..++.+|+||++.+.++ +..++ |||.||..||..|+..+..||+||+++...+..++.
T Consensus 12 ~~~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 69 (72)
T 2djb_A 12 LTPYILCSICKGYLIDA--TTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLSGP 69 (72)
T ss_dssp CCGGGSCTTTSSCCSSC--EECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCCCC
T ss_pred cCCCCCCCCCChHHHCc--CEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCcccccccC
Confidence 45567899999998764 33346 999999999999999889999999999887766543
No 14
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.66 E-value=5.6e-17 Score=102.17 Aligned_cols=50 Identities=32% Similarity=0.709 Sum_probs=42.5
Q ss_pred CcccccccccccccCC---------------ceeecCCCCCcccHhhHHHHHcCCCcccccccccc
Q 038049 77 ASAGCAICLLDFIDGD---------------EIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLK 127 (141)
Q Consensus 77 ~~~~C~ICl~~~~~~~---------------~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~ 127 (141)
++..|+||++.|...- .+..++ |+|.||.+||..|+.++.+||+||+++.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 4577999999987541 356677 9999999999999999999999999864
No 15
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=6.7e-17 Score=94.53 Aligned_cols=53 Identities=36% Similarity=0.845 Sum_probs=45.2
Q ss_pred CCCcccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccCCCCC
Q 038049 75 SSASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKPSDAM 132 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~~~~ 132 (141)
..++.+|+||++.+.+ ..+| |||.||..|+..|+.++.+||+||+++...+..
T Consensus 12 ~~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 64 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGANES 64 (70)
T ss_dssp CCCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCCCCC
T ss_pred CCCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCCCcc
Confidence 3445789999999866 5677 999999999999999999999999999866543
No 16
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.7e-16 Score=95.15 Aligned_cols=56 Identities=27% Similarity=0.657 Sum_probs=45.9
Q ss_pred CCCcccccccccccccCCceeecCCCC-----CcccHhhHHHHHcCC--CccccccccccCCCCC
Q 038049 75 SSASAGCAICLLDFIDGDEIRLLPKCN-----HRFHVACIDKWLLSH--SSCPTCRQRLKPSDAM 132 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v~~lp~C~-----H~Fh~~Ci~~wl~~~--~~CP~CR~~~~~~~~~ 132 (141)
..++..|.||++++.+++.+ ++| |+ |.||.+||+.|+..+ .+||+||..+..+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~ 74 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKL 74 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCS
T ss_pred CCCCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCccc
Confidence 34557899999999877766 588 96 999999999999865 5899999999765543
No 17
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=9.7e-17 Score=94.16 Aligned_cols=51 Identities=31% Similarity=0.623 Sum_probs=43.8
Q ss_pred CCCcccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccCC
Q 038049 75 SSASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKPS 129 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~ 129 (141)
..++.+|+||++.+.+. ..++ |||.||..||..|+..+..||+||+.+...
T Consensus 12 ~~~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHP---VSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPED 62 (71)
T ss_dssp SSSCCBCSSSSSBCSSE---EEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCHH
T ss_pred CCCCCCCccCCcccCCC---EEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCHh
Confidence 45567899999998654 5677 999999999999999999999999998644
No 18
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.61 E-value=1.8e-16 Score=92.19 Aligned_cols=49 Identities=33% Similarity=0.830 Sum_probs=42.3
Q ss_pred CcccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccC
Q 038049 77 ASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKP 128 (141)
Q Consensus 77 ~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~ 128 (141)
.+.+|+||++.+.+ .+..+| |||.||.+|+..|+.++.+||+||+++..
T Consensus 4 ~~~~C~IC~~~~~~--~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSN--YSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCS--CEEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccC--CcEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 45789999999864 346787 99999999999999989999999998864
No 19
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=7e-16 Score=89.18 Aligned_cols=52 Identities=23% Similarity=0.562 Sum_probs=43.1
Q ss_pred CCCcccccccccccccCCceeecCCCCCcccHhhHHHHHc-CCCccccccccccCCC
Q 038049 75 SSASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLL-SHSSCPTCRQRLKPSD 130 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~-~~~~CP~CR~~~~~~~ 130 (141)
..++.+|+||++.+.++ ..++ |||.||..||..|+. .+..||+||+++..++
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSP---KQTE-CGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp CCCCEECTTTCCEESSC---CCCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred CCcCCCCCCCChHhcCe---eECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 34567899999999766 3467 999999999999994 5678999999987654
No 20
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=7.7e-16 Score=93.68 Aligned_cols=54 Identities=28% Similarity=0.629 Sum_probs=45.6
Q ss_pred CCCcccccccccccccCCc-eeecCCCCCcccHhhHHHHHcCC---CccccccccccCC
Q 038049 75 SSASAGCAICLLDFIDGDE-IRLLPKCNHRFHVACIDKWLLSH---SSCPTCRQRLKPS 129 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~-v~~lp~C~H~Fh~~Ci~~wl~~~---~~CP~CR~~~~~~ 129 (141)
..+..+|+||++.|.+.+. ...++ |||.||..|+..|+..+ ..||+||+++...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred ccCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 4456789999999988664 56777 99999999999999875 7899999988654
No 21
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.60 E-value=1e-15 Score=90.47 Aligned_cols=53 Identities=30% Similarity=0.590 Sum_probs=43.2
Q ss_pred CCCcccccccccccccCCceeecCCCCCcccHhhHHHHHcCC--CccccccccccCCC
Q 038049 75 SSASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSH--SSCPTCRQRLKPSD 130 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~--~~CP~CR~~~~~~~ 130 (141)
..++.+|+||++.+.++ ..++.|||.||..||..|+..+ ..||+||+++...+
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 12 IPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp SCGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred CCCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 45567899999999765 4565599999999999999865 68999999865444
No 22
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=7.6e-16 Score=92.52 Aligned_cols=49 Identities=22% Similarity=0.464 Sum_probs=42.5
Q ss_pred CCCcccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCcccccccccc
Q 038049 75 SSASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLK 127 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~ 127 (141)
.....+|+||++.+.++ ..++ |||.||..||..|+.....||+||+++.
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNP---VVTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCCSE---EECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCCcCCCchhcCe---eEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 34457899999998664 4677 9999999999999998999999999986
No 23
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.59 E-value=1.2e-16 Score=102.06 Aligned_cols=51 Identities=31% Similarity=0.709 Sum_probs=0.9
Q ss_pred CcccccccccccccC-------------C--ceeecCCCCCcccHhhHHHHHcCCCccccccccccC
Q 038049 77 ASAGCAICLLDFIDG-------------D--EIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKP 128 (141)
Q Consensus 77 ~~~~C~ICl~~~~~~-------------~--~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~ 128 (141)
+++.|+||+++|.+. + .+..++ |+|.||.+||..|+.++.+||+||+++..
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~-C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWEF 112 (117)
T ss_dssp CC-----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCC-cCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence 357899999999752 2 233345 99999999999999999999999998643
No 24
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=1.3e-15 Score=89.58 Aligned_cols=52 Identities=23% Similarity=0.529 Sum_probs=42.8
Q ss_pred CCCcccccccccccccCCceeecCCCCCcccHhhHHHHHc---CCCccccccccccCCC
Q 038049 75 SSASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLL---SHSSCPTCRQRLKPSD 130 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~---~~~~CP~CR~~~~~~~ 130 (141)
..++.+|+||++.+.++ ..++ |||.||.+|+..|+. .+..||+||+++..++
T Consensus 17 ~~~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 17 LQEEVICPICLDILQKP---VTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCCBCTTTCSBCSSE---EECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred CccCCEeccCCcccCCe---EEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 44567899999998754 5567 999999999999996 4568999999987654
No 25
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.57 E-value=1.7e-15 Score=90.31 Aligned_cols=56 Identities=23% Similarity=0.469 Sum_probs=46.5
Q ss_pred CCCcccccccccccccCCceeecCCCCCcccHhhHHHHHcC-CCccccccccccCCCCCCC
Q 038049 75 SSASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLS-HSSCPTCRQRLKPSDAMPS 134 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~-~~~CP~CR~~~~~~~~~~~ 134 (141)
..++..|+||++.+.++ ..++ |||.||..||..|+.. +.+||+||+++...+..++
T Consensus 5 ~~~~~~C~IC~~~~~~P---v~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n 61 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDP---VIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPN 61 (78)
T ss_dssp CSSSSSCTTTSCCCSSE---EEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEEC
T ss_pred CcccCCCCCccccccCC---EEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccC
Confidence 34457899999999765 5567 9999999999999987 7889999999987665544
No 26
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.57 E-value=7.2e-16 Score=101.55 Aligned_cols=49 Identities=35% Similarity=0.850 Sum_probs=42.6
Q ss_pred cccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccCCC
Q 038049 78 SAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKPSD 130 (141)
Q Consensus 78 ~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~~ 130 (141)
+.+|+||++.+.++ ..+| |||.||..||..|+..+.+||+||+++....
T Consensus 53 ~~~C~iC~~~~~~~---~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 53 ELQCIICSEYFIEA---VTLN-CAHSFCSYCINEWMKRKIECPICRKDIKSKT 101 (138)
T ss_dssp HSBCTTTCSBCSSE---EEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCCEE
T ss_pred cCCCcccCcccCCc---eECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCCCC
Confidence 35799999998664 5677 9999999999999999999999999986543
No 27
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.56 E-value=3.5e-15 Score=90.01 Aligned_cols=55 Identities=31% Similarity=0.555 Sum_probs=45.3
Q ss_pred CCCcccccccccccccCCceeecCCCCCcccHhhHHHHHcC------CCccccccccccCCCCCC
Q 038049 75 SSASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLS------HSSCPTCRQRLKPSDAMP 133 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~------~~~CP~CR~~~~~~~~~~ 133 (141)
..++.+|+||++.+.++ ..++ |||.||..|+..|+.. ...||.||+++..++..+
T Consensus 16 ~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~ 76 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEP---VSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKP 76 (85)
T ss_dssp CCTTTSCTTTCSCCSSC---EECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEE
T ss_pred CccCCCCcCCChhhCcc---eeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCc
Confidence 34567899999998776 4677 9999999999999987 678999999988665433
No 28
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=4.2e-15 Score=89.68 Aligned_cols=56 Identities=32% Similarity=0.647 Sum_probs=46.1
Q ss_pred CCCcccccccccccccCCceeecCCCCCcccHhhHHHHHcC------CCccccccccccCCCCCCC
Q 038049 75 SSASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLS------HSSCPTCRQRLKPSDAMPS 134 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~------~~~CP~CR~~~~~~~~~~~ 134 (141)
..+..+|+||++.+.++ ..++ |||.||..|+..|+.. ...||.||+.+...+..++
T Consensus 16 ~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n 77 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQP---LSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPN 77 (85)
T ss_dssp CCCCCCCTTTCSCCSSC---BCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCS
T ss_pred ccCCCCCCCCCcccCCc---eeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCcc
Confidence 34567899999998765 4567 9999999999999987 7789999999987655444
No 29
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.55 E-value=8.1e-16 Score=91.81 Aligned_cols=55 Identities=27% Similarity=0.463 Sum_probs=44.7
Q ss_pred CCCcccccccccccccCCceeecCCCCCcccHhhHHHHHcC-------CCccccccccccCCCCCC
Q 038049 75 SSASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLS-------HSSCPTCRQRLKPSDAMP 133 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~-------~~~CP~CR~~~~~~~~~~ 133 (141)
..++.+|+||++.+.++ ..++ |||.||.+||..|+.. ...||.||+++..++..+
T Consensus 9 ~~~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~ 70 (79)
T 2egp_A 9 VQEEVTCPICLELLTEP---LSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQA 70 (79)
T ss_dssp CCCCCEETTTTEECSSC---CCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGT
T ss_pred cccCCCCcCCCcccCCe---eECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCc
Confidence 34567899999999775 4577 9999999999999986 567999999987654333
No 30
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.55 E-value=2.1e-15 Score=98.18 Aligned_cols=55 Identities=27% Similarity=0.640 Sum_probs=46.5
Q ss_pred CCcccccccccccccC----CceeecCCCCCcccHhhHHHHHcCCCccccccccccCCCC
Q 038049 76 SASAGCAICLLDFIDG----DEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKPSDA 131 (141)
Q Consensus 76 ~~~~~C~ICl~~~~~~----~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~~~ 131 (141)
.++.+|+||++.+.++ +.+..++ |||.||.+||..|+..+.+||+||+.+..++.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l 63 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 63 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCE
T ss_pred CCCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCccccc
Confidence 3457899999999764 4456777 99999999999999999999999999876553
No 31
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.54 E-value=1.1e-15 Score=95.45 Aligned_cols=52 Identities=27% Similarity=0.654 Sum_probs=42.9
Q ss_pred CcccccccccccccCCceeecCCCCCcccHhhHHHHHcCC-CccccccccccCCCC
Q 038049 77 ASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSH-SSCPTCRQRLKPSDA 131 (141)
Q Consensus 77 ~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~-~~CP~CR~~~~~~~~ 131 (141)
++.+|+||++.+.++ +..++ |||.||..||..|+..+ ..||+||+++...+.
T Consensus 21 ~~~~C~IC~~~~~~p--~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l 73 (100)
T 3lrq_A 21 EVFRCFICMEKLRDA--RLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQLREL 73 (100)
T ss_dssp HHTBCTTTCSBCSSE--EECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred CCCCCccCCccccCc--cccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHh
Confidence 357799999999654 33377 99999999999999887 699999999876543
No 32
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.52 E-value=4.9e-15 Score=85.32 Aligned_cols=55 Identities=22% Similarity=0.550 Sum_probs=43.5
Q ss_pred ccccccccc-ccccCCce-eecCCCCCcccHhhHHHHHcC-CCccccccccccCCCCCC
Q 038049 78 SAGCAICLL-DFIDGDEI-RLLPKCNHRFHVACIDKWLLS-HSSCPTCRQRLKPSDAMP 133 (141)
Q Consensus 78 ~~~C~ICl~-~~~~~~~v-~~lp~C~H~Fh~~Ci~~wl~~-~~~CP~CR~~~~~~~~~~ 133 (141)
+.+|+||++ .+.++... ..++ |||.||..||..|+.+ +..||+||+++..++..+
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 60 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRV 60 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEE
T ss_pred CCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCcccccccee
Confidence 467999999 77766543 3466 9999999999999765 467999999998765443
No 33
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.52 E-value=2.9e-15 Score=93.25 Aligned_cols=55 Identities=27% Similarity=0.596 Sum_probs=44.5
Q ss_pred CcccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccCCCCCCC
Q 038049 77 ASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKPSDAMPS 134 (141)
Q Consensus 77 ~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~~~~~~ 134 (141)
++.+|+||++.+.++ +..++ |||.||..||..|+..+..||+||+.+...+..++
T Consensus 21 ~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n 75 (99)
T 2y43_A 21 DLLRCGICFEYFNIA--MIIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNN 75 (99)
T ss_dssp HHTBCTTTCSBCSSE--EECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEEC
T ss_pred CCCCcccCChhhCCc--CEECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcC
Confidence 346799999998764 33346 99999999999999999999999999886544443
No 34
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=2e-14 Score=82.20 Aligned_cols=44 Identities=27% Similarity=0.572 Sum_probs=37.1
Q ss_pred CCCcccccccccccccCCceeecCCCCCcccHhhHHHHHc---CCCccccc
Q 038049 75 SSASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLL---SHSSCPTC 122 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~---~~~~CP~C 122 (141)
..++.+|+||++.+.++ ..++ |||.||..||..|+. .+..||+|
T Consensus 17 ~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKP---VTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSC---EECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCCe---EEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 44567899999998765 5667 999999999999998 45689998
No 35
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=2.4e-14 Score=84.15 Aligned_cols=52 Identities=29% Similarity=0.688 Sum_probs=43.1
Q ss_pred CCCcccccccccccccCCceeecCCCCCcccHhhHHHHHcCC--CccccccccccCC
Q 038049 75 SSASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSH--SSCPTCRQRLKPS 129 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~--~~CP~CR~~~~~~ 129 (141)
.+...+|+||.+.+.+++... .|+|.||.+||..||+++ .+||+||+++..+
T Consensus 12 ~~~i~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 12 PDAVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SSSSCBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred cCCCCcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 344578999999998765443 499999999999999987 7899999988644
No 36
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.49 E-value=1.5e-14 Score=93.51 Aligned_cols=48 Identities=25% Similarity=0.517 Sum_probs=41.3
Q ss_pred CcccccccccccccCCceeecCCCCCcccHhhHHHHHcCC-CccccccccccC
Q 038049 77 ASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSH-SSCPTCRQRLKP 128 (141)
Q Consensus 77 ~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~-~~CP~CR~~~~~ 128 (141)
++..|+||++.+.++ ..+| |||.||..||..|+..+ ..||+||+++..
T Consensus 51 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRP---ITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSE---EECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCc---EEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 356799999999765 5667 99999999999999854 489999999987
No 37
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=2.5e-14 Score=80.34 Aligned_cols=44 Identities=32% Similarity=0.854 Sum_probs=36.4
Q ss_pred CCCcccccccccccccCCceeecCCCCCcccHhhHHHHHc---CCCccccc
Q 038049 75 SSASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLL---SHSSCPTC 122 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~---~~~~CP~C 122 (141)
..++.+|+||++.+.++ ..++ |||.||.+||..|+. .+..||+|
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEP---VIIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSSC---CCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCcc---EeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34557899999999776 4577 999999999999954 56789998
No 38
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.48 E-value=1.9e-14 Score=90.92 Aligned_cols=50 Identities=28% Similarity=0.681 Sum_probs=42.7
Q ss_pred CcccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccCC
Q 038049 77 ASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKPS 129 (141)
Q Consensus 77 ~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~ 129 (141)
++.+|+||++.+.++ +..++ |||.||..||..|+..+..||.||+.+...
T Consensus 14 ~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDA--TTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCSSE--EEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CcCCCccCChHHhCc--CEeCC-CCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 457899999998654 44447 999999999999999999999999998765
No 39
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.48 E-value=3.9e-14 Score=86.88 Aligned_cols=50 Identities=30% Similarity=0.593 Sum_probs=41.3
Q ss_pred CCCcccccccccccccCCceeecCCCCCcccHhhHHHHHcC--CCcccccccccc
Q 038049 75 SSASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLS--HSSCPTCRQRLK 127 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~--~~~CP~CR~~~~ 127 (141)
..++..|+||++.|.++ ..+|.|||.||..||..|+.. +..||+||+++.
T Consensus 10 ~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 10 IPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 44567899999999866 456559999999999999964 368999999974
No 40
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.47 E-value=1.4e-14 Score=94.20 Aligned_cols=54 Identities=28% Similarity=0.665 Sum_probs=45.5
Q ss_pred CCcccccccccccccC----CceeecCCCCCcccHhhHHHHHcCCCccccccccccCCC
Q 038049 76 SASAGCAICLLDFIDG----DEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKPSD 130 (141)
Q Consensus 76 ~~~~~C~ICl~~~~~~----~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~~ 130 (141)
++..+|+||++.+.+. .....++ |||.||..||+.|+..+.+||+||+++..++
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 127 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChhc
Confidence 4567899999998763 3345666 9999999999999999999999999987654
No 41
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.45 E-value=3.9e-14 Score=89.79 Aligned_cols=52 Identities=25% Similarity=0.517 Sum_probs=43.1
Q ss_pred cccccccccccccCCceeecCCCCCcccHhhHHHHHcCCC---ccccccccccCCCCCC
Q 038049 78 SAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHS---SCPTCRQRLKPSDAMP 133 (141)
Q Consensus 78 ~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~---~CP~CR~~~~~~~~~~ 133 (141)
..+|+||++.+.++ ..++ |||.||..||..|+..+. .||+||.++......+
T Consensus 21 ~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~ 75 (112)
T 1jm7_A 21 ILECPICLELIKEP---VSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQE 75 (112)
T ss_dssp HTSCSSSCCCCSSC---CBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBC
T ss_pred CCCCcccChhhcCe---EECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCc
Confidence 46799999998765 4567 999999999999998654 8999999998765444
No 42
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.45 E-value=1.4e-14 Score=92.57 Aligned_cols=54 Identities=33% Similarity=0.563 Sum_probs=44.7
Q ss_pred CcccccccccccccCCceeecCCCCCcccHhhHHHHHcC-CCccccccccccCCCCCCC
Q 038049 77 ASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLS-HSSCPTCRQRLKPSDAMPS 134 (141)
Q Consensus 77 ~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~-~~~CP~CR~~~~~~~~~~~ 134 (141)
++..|+||++.+.++ ..++ |||.||..||..|+.. +.+||+||+++...+..+.
T Consensus 22 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 76 (116)
T 1rmd_A 22 KSISCQICEHILADP---VETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESP 76 (116)
T ss_dssp HHTBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCC
T ss_pred CCCCCCCCCcHhcCc---EEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhcccc
Confidence 356799999998665 4577 9999999999999986 7789999999987664443
No 43
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.44 E-value=2.7e-14 Score=91.58 Aligned_cols=57 Identities=32% Similarity=0.654 Sum_probs=46.1
Q ss_pred CCCCcccccccccccccCCceeecCCCCCcccHhhHHHHHcCCC-ccccccccccCCCCCCC
Q 038049 74 PSSASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHS-SCPTCRQRLKPSDAMPS 134 (141)
Q Consensus 74 ~~~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~-~CP~CR~~~~~~~~~~~ 134 (141)
...++..|+||++.+.++ ..++ |||.||..||..|+..+. .||+||.++...+..++
T Consensus 14 ~~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 71 (118)
T 3hct_A 14 PLESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPD 71 (118)
T ss_dssp CCCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEEC
T ss_pred CCCCCCCCCcCChhhcCe---EECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccC
Confidence 345567899999998765 5577 999999999999998764 99999999877554443
No 44
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.42 E-value=8.8e-14 Score=92.76 Aligned_cols=49 Identities=24% Similarity=0.499 Sum_probs=42.2
Q ss_pred CcccccccccccccCCceeecCCCCCcccHhhHHHHHcCCC-ccccccccccCC
Q 038049 77 ASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHS-SCPTCRQRLKPS 129 (141)
Q Consensus 77 ~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~-~CP~CR~~~~~~ 129 (141)
+...|+||++.+.++ ..+| |||.||..||..|+..+. .||+||.++...
T Consensus 77 ~~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQP---VTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSE---EECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCC---EEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 346899999998765 4577 999999999999998764 899999999877
No 45
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.41 E-value=1.1e-13 Score=93.51 Aligned_cols=51 Identities=35% Similarity=0.675 Sum_probs=42.2
Q ss_pred CCcccccccccccccCCceeecCCCCCcccHhhHHHHHcC-CCccccccccccCC
Q 038049 76 SASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLS-HSSCPTCRQRLKPS 129 (141)
Q Consensus 76 ~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~-~~~CP~CR~~~~~~ 129 (141)
.+...|+||++.+.++ +..++ |||.||..||..|+.. +..||+||.++...
T Consensus 52 ~~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 103 (165)
T 2ckl_B 52 HSELMCPICLDMLKNT--MTTKE-CLHRFCADCIITALRSGNKECPTCRKKLVSK 103 (165)
T ss_dssp HHHHBCTTTSSBCSSE--EEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBCCSG
T ss_pred CCCCCCcccChHhhCc--CEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCcCCCc
Confidence 3456899999998763 44457 9999999999999987 78899999998643
No 46
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.40 E-value=3.9e-14 Score=90.36 Aligned_cols=50 Identities=30% Similarity=0.720 Sum_probs=42.5
Q ss_pred CCCcccccccccccccCCceeecCCCCCcccHhhHHHHHcC-CCccccccccccC
Q 038049 75 SSASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLS-HSSCPTCRQRLKP 128 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~-~~~CP~CR~~~~~ 128 (141)
..++.+|+||++.+.++ ..++ |||.||..||..|+.. +..||.||+.+..
T Consensus 12 ~~~~~~C~iC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 12 SLSECQCGICMEILVEP---VTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp CHHHHBCTTTCSBCSSC---EECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCCccCCcccCce---eEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 45567899999998765 5667 9999999999999976 6789999998863
No 47
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.39 E-value=1.1e-13 Score=77.39 Aligned_cols=49 Identities=22% Similarity=0.502 Sum_probs=40.9
Q ss_pred CCcccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccCCCC
Q 038049 76 SASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKPSDA 131 (141)
Q Consensus 76 ~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~~~ 131 (141)
.++.+|+||++.+.++ ..+| |||.||..|+..| ...||+||+.+..+..
T Consensus 4 ~~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~~ 52 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP---KLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLGAD 52 (56)
T ss_dssp CCCSSCSSSCSSCBCC---SCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCCSS
T ss_pred ccCCCceEeCCccCCe---EEcC-CCCcccHHHHccC---CCCCCcCCcEeecCCc
Confidence 4457799999999876 6788 9999999999884 6789999999876543
No 48
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.38 E-value=6e-13 Score=79.22 Aligned_cols=55 Identities=16% Similarity=0.379 Sum_probs=42.2
Q ss_pred CCCcccccccccccccCCce-eecCCCCCcccHhhHHHHHcC-CCccccccccccCCC
Q 038049 75 SSASAGCAICLLDFIDGDEI-RLLPKCNHRFHVACIDKWLLS-HSSCPTCRQRLKPSD 130 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v-~~lp~C~H~Fh~~Ci~~wl~~-~~~CP~CR~~~~~~~ 130 (141)
..++.+|+||++.+...+.. .-++ |||.||..|+..++.. +..||.||+++....
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred cccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 34567899999988644332 2245 9999999999999753 578999999997654
No 49
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.38 E-value=1.3e-13 Score=79.18 Aligned_cols=50 Identities=26% Similarity=0.430 Sum_probs=40.4
Q ss_pred CCCcccccccccccccCCcee-ecCCCCCc-ccHhhHHHHHcCCCcccccccccc
Q 038049 75 SSASAGCAICLLDFIDGDEIR-LLPKCNHR-FHVACIDKWLLSHSSCPTCRQRLK 127 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v~-~lp~C~H~-Fh~~Ci~~wl~~~~~CP~CR~~~~ 127 (141)
..++.+|+||++...+. +. .+| |||. |+.+|+..|...+..||+||+++.
T Consensus 5 ~~~~~~C~IC~~~~~~~--~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 5 LNAIEPCVICQGRPKNG--CIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp CGGGSCCTTTSSSCSCE--EEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CCCcCCCCcCCCCCCCE--EEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 34567899999886443 22 238 9999 899999999998899999999875
No 50
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.38 E-value=1.9e-13 Score=85.23 Aligned_cols=57 Identities=21% Similarity=0.135 Sum_probs=49.5
Q ss_pred CCcccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccCCCCCCCch
Q 038049 76 SASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKPSDAMPSLD 136 (141)
Q Consensus 76 ~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~~~~~~~~ 136 (141)
.++-.|+||++.|.++ ..++ |||.|+..||..|+..+.+||.||.++...+..|+..
T Consensus 27 p~~~~CpI~~~~m~dP---V~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~ 83 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDP---VRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPE 83 (100)
T ss_dssp STTTBCTTTCSBCSSE---EEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHH
T ss_pred cHhhCCcCccCcccCC---eECC-CCCEEchHHHHHHHHcCCCCCCCCCCCChhhceECHH
Confidence 4457899999999887 6777 9999999999999998899999999998877777643
No 51
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.37 E-value=2.5e-13 Score=82.22 Aligned_cols=57 Identities=21% Similarity=0.128 Sum_probs=49.0
Q ss_pred CCcccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccCCCCCCCch
Q 038049 76 SASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKPSDAMPSLD 136 (141)
Q Consensus 76 ~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~~~~~~~~ 136 (141)
.++-.|+||++.|.++ ..++ |||.|+..||..|+..+.+||.||.++...+..++..
T Consensus 12 p~~~~CpI~~~~m~dP---V~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~~ 68 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDP---VRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVPE 68 (85)
T ss_dssp CTTTBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECHH
T ss_pred chheECcccCchhcCC---eECC-CCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHHH
Confidence 3457899999999887 6787 9999999999999998899999999998777666643
No 52
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.37 E-value=1.7e-13 Score=78.38 Aligned_cols=51 Identities=22% Similarity=0.442 Sum_probs=40.5
Q ss_pred CCCcccccccccccccCCceeecCCCCCc-ccHhhHHHHHcCCCcccccccccc
Q 038049 75 SSASAGCAICLLDFIDGDEIRLLPKCNHR-FHVACIDKWLLSHSSCPTCRQRLK 127 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v~~lp~C~H~-Fh~~Ci~~wl~~~~~CP~CR~~~~ 127 (141)
.+.+.+|.||++...+. .+..+| |||. |+.+|+..|...+..||+||+++.
T Consensus 4 ~~~~~~C~IC~~~~~~~-~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 4 QNLLKPCSLCEKRPRDG-NIIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGGGSBCTTTSSSBSCE-EEEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CCcCCCCcccCCcCCCe-EEEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 44567899999875443 122348 9998 999999999988889999999875
No 53
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.35 E-value=6.8e-13 Score=82.34 Aligned_cols=57 Identities=21% Similarity=0.188 Sum_probs=49.2
Q ss_pred CCcccccccccccccCCceeecCCCC-CcccHhhHHHHHcCCCccccccccccCCCCCCCch
Q 038049 76 SASAGCAICLLDFIDGDEIRLLPKCN-HRFHVACIDKWLLSHSSCPTCRQRLKPSDAMPSLD 136 (141)
Q Consensus 76 ~~~~~C~ICl~~~~~~~~v~~lp~C~-H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~~~~~~~~ 136 (141)
.++-.|+||++.|.++ ..++ || |.|+..||..|+..+.+||.||.++...+..|+..
T Consensus 20 p~~~~CpI~~~~m~dP---V~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~ 77 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDP---VVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTE 77 (98)
T ss_dssp CTTTBCTTTCSBCSSE---EECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHH
T ss_pred cHhcCCcCccccccCC---eECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcHH
Confidence 3457899999999877 5677 99 99999999999998889999999998877777643
No 54
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.33 E-value=2.8e-13 Score=86.66 Aligned_cols=51 Identities=22% Similarity=0.428 Sum_probs=42.7
Q ss_pred cccccccccccccCCceeec-CCCCCcccHhhHHHHHcCCCccccccccccCCCCCCC
Q 038049 78 SAGCAICLLDFIDGDEIRLL-PKCNHRFHVACIDKWLLSHSSCPTCRQRLKPSDAMPS 134 (141)
Q Consensus 78 ~~~C~ICl~~~~~~~~v~~l-p~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~~~~~~ 134 (141)
+..|+||++.+.++ ..+ + |||.||..||..|+. ..||+||.++...+..++
T Consensus 22 ~~~C~IC~~~~~~p---v~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~~~~n 73 (117)
T 1jm7_B 22 LLRCSRCTNILREP---VCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAWIQDLKIN 73 (117)
T ss_dssp TTSCSSSCSCCSSC---BCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCSCSSCCCC
T ss_pred CCCCCCCChHhhCc---cEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCcccccccc
Confidence 47799999999766 455 6 999999999999987 889999999976655554
No 55
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.31 E-value=7.1e-13 Score=99.90 Aligned_cols=49 Identities=29% Similarity=0.700 Sum_probs=41.9
Q ss_pred cccccccccccccCCceeecCCCCCcccHhhHHHHHc-CCCccccccccccCCC
Q 038049 78 SAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLL-SHSSCPTCRQRLKPSD 130 (141)
Q Consensus 78 ~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~-~~~~CP~CR~~~~~~~ 130 (141)
..+|+||++.+.+. ..+| |||.||..|+..|+. .+.+||+||+++....
T Consensus 332 ~~~C~ICle~~~~p---v~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 332 FQLCKICAENDKDV---KIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp SSBCTTTSSSBCCE---EEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred CCCCCccCcCCCCe---EEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence 36899999997553 6788 999999999999998 6889999999887543
No 56
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.31 E-value=5.8e-13 Score=87.90 Aligned_cols=51 Identities=22% Similarity=0.354 Sum_probs=42.1
Q ss_pred CCCcccccccccccccCCceeecCCCCCcccHhhHHHHHcCC-CccccccccccCC
Q 038049 75 SSASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSH-SSCPTCRQRLKPS 129 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~-~~CP~CR~~~~~~ 129 (141)
..++.+|+||++.+.++ ..++ |||.||..||..|+..+ ..||+||.++..+
T Consensus 28 l~~~~~C~IC~~~~~~p---v~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 79 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRP---FQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGIYE 79 (141)
T ss_dssp CCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTCCC
T ss_pred CCcCcCCCCCChhhcCc---EECC-CCCccCHHHHHHHHhcCCCCCCCCCCccccc
Confidence 44567899999999776 4577 99999999999999865 4899999986533
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.24 E-value=1.2e-12 Score=77.18 Aligned_cols=44 Identities=25% Similarity=0.551 Sum_probs=37.3
Q ss_pred CcccccccccccccCCceeecCCCCCc-ccHhhHHHHHcCCCccccccccccC
Q 038049 77 ASAGCAICLLDFIDGDEIRLLPKCNHR-FHVACIDKWLLSHSSCPTCRQRLKP 128 (141)
Q Consensus 77 ~~~~C~ICl~~~~~~~~v~~lp~C~H~-Fh~~Ci~~wl~~~~~CP~CR~~~~~ 128 (141)
++.+|+||++.+.+. ..+| |||. ||..|+..| ..||+||+++..
T Consensus 23 ~~~~C~iC~~~~~~~---~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIAI---VFVP-CGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCCE---EEET-TCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCCE---EEcC-CCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 346799999987554 6678 9999 999999998 899999998864
No 58
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=99.24 E-value=1.6e-12 Score=96.04 Aligned_cols=55 Identities=29% Similarity=0.760 Sum_probs=42.2
Q ss_pred CCCcccccccccccccCCcee----ecCCCCCcccHhhHHHHHcCC-----------CccccccccccCC
Q 038049 75 SSASAGCAICLLDFIDGDEIR----LLPKCNHRFHVACIDKWLLSH-----------SSCPTCRQRLKPS 129 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v~----~lp~C~H~Fh~~Ci~~wl~~~-----------~~CP~CR~~~~~~ 129 (141)
.+...+|+||++.+.++..+. ..+.|||.||..|+.+|+++. .+||+||+++..+
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 456788999999998743332 122499999999999999752 3599999998754
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.22 E-value=1.9e-12 Score=87.80 Aligned_cols=56 Identities=30% Similarity=0.617 Sum_probs=45.7
Q ss_pred CCCcccccccccccccCCceeecCCCCCcccHhhHHHHHcCC-CccccccccccCCCCCCC
Q 038049 75 SSASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSH-SSCPTCRQRLKPSDAMPS 134 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~-~~CP~CR~~~~~~~~~~~ 134 (141)
..++..|+||++.+.++ ..++ |||.||..||..|+..+ ..||+||.++...+..++
T Consensus 15 ~~~~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 71 (170)
T 3hcs_A 15 LESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPD 71 (170)
T ss_dssp CCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEEC
T ss_pred CCCCCCCCCCChhhcCc---EECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhh
Confidence 45567899999998766 4577 99999999999999764 499999999887654443
No 60
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.19 E-value=3.7e-12 Score=78.45 Aligned_cols=57 Identities=21% Similarity=0.415 Sum_probs=44.3
Q ss_pred CCcccccccccccccCCceeecCCCCCcccHhhHHHHHcCC------Ccccc--cccc-ccCCCCCCCc
Q 038049 76 SASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSH------SSCPT--CRQR-LKPSDAMPSL 135 (141)
Q Consensus 76 ~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~------~~CP~--CR~~-~~~~~~~~~~ 135 (141)
..+..|+||++.|.++ ..++.|||.|+..||..|+..+ .+||+ |++. +...+..++.
T Consensus 5 ~~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~ 70 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDE 70 (94)
T ss_dssp SSCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECH
T ss_pred CcEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCH
Confidence 3457799999999765 4453499999999999999753 48999 9877 7666665553
No 61
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.15 E-value=1.3e-11 Score=89.32 Aligned_cols=57 Identities=16% Similarity=0.167 Sum_probs=47.5
Q ss_pred CCCcccccccccccccCCceeecCCCCCcccHhhHHHHHcC-CCccccccccccCCCCCCCc
Q 038049 75 SSASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLS-HSSCPTCRQRLKPSDAMPSL 135 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~-~~~CP~CR~~~~~~~~~~~~ 135 (141)
....-.|+||++.|.++ .++| |||.|+..||..|+.. +.+||+||.++...+..|+.
T Consensus 205 ~~~~~~c~i~~~~~~dP---v~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~ 262 (281)
T 2c2l_A 205 IPDYLCGKISFELMREP---CITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNL 262 (281)
T ss_dssp CCSTTBCTTTCSBCSSE---EECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECH
T ss_pred CCcccCCcCcCCHhcCC---eECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccH
Confidence 34567899999999877 6787 9999999999999986 45599999999877776663
No 62
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=3.1e-11 Score=69.89 Aligned_cols=47 Identities=32% Similarity=0.759 Sum_probs=38.2
Q ss_pred CCCcccccccccccccCCceeecCCCCCc-ccHhhHHHHHcCCCccccccccccCC
Q 038049 75 SSASAGCAICLLDFIDGDEIRLLPKCNHR-FHVACIDKWLLSHSSCPTCRQRLKPS 129 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v~~lp~C~H~-Fh~~Ci~~wl~~~~~CP~CR~~~~~~ 129 (141)
..++..|.||++...+ +..+| |||. |+..|+.. ...||+||+.+...
T Consensus 12 ~~~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVN---WVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQES 59 (68)
T ss_dssp CCCSSCCSSSSSSCCC---CEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCCE
T ss_pred CCCCCCCCCcCcCCCC---EEEEC-CCChhhhHHHHhc----CCCCCCCCcchhce
Confidence 4456789999987544 47888 9999 99999984 47899999988654
No 63
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.13 E-value=2.8e-11 Score=74.40 Aligned_cols=48 Identities=25% Similarity=0.688 Sum_probs=40.2
Q ss_pred CcccccccccccccCCceeecCCCCCcccHhhHHHHHcC--------CCcccc--cccc
Q 038049 77 ASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLS--------HSSCPT--CRQR 125 (141)
Q Consensus 77 ~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~--------~~~CP~--CR~~ 125 (141)
+..+|+||++++..++.+...+ |||.||.+|+..|+.. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 4568999999998777676677 9999999999999863 236999 9987
No 64
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=99.12 E-value=4.6e-11 Score=67.44 Aligned_cols=49 Identities=24% Similarity=0.658 Sum_probs=37.7
Q ss_pred CCcccccccccccccCCceeecCCCC--C---cccHhhHHHHHcC--CCccccccccccC
Q 038049 76 SASAGCAICLLDFIDGDEIRLLPKCN--H---RFHVACIDKWLLS--HSSCPTCRQRLKP 128 (141)
Q Consensus 76 ~~~~~C~ICl~~~~~~~~v~~lp~C~--H---~Fh~~Ci~~wl~~--~~~CP~CR~~~~~ 128 (141)
++...|.||+++. ++.+ ++| |. | .||.+|+..|+.. +.+||+||..+..
T Consensus 4 ~~~~~CrIC~~~~--~~~l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEEL--GNER-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEEC--SCCC-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCC--CCce-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 4457899999883 3333 577 65 4 8999999999964 6789999998754
No 65
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=1.8e-11 Score=72.18 Aligned_cols=44 Identities=25% Similarity=0.556 Sum_probs=36.4
Q ss_pred cccccccccccccCCceeecCCCCCc-ccHhhHHHHHcCCCccccccccccCC
Q 038049 78 SAGCAICLLDFIDGDEIRLLPKCNHR-FHVACIDKWLLSHSSCPTCRQRLKPS 129 (141)
Q Consensus 78 ~~~C~ICl~~~~~~~~v~~lp~C~H~-Fh~~Ci~~wl~~~~~CP~CR~~~~~~ 129 (141)
+.+|+||++.+.+. ..+| |||. ||..|+.. ...||+||+++...
T Consensus 25 ~~~C~IC~~~~~~~---~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICMDRNIAI---VFVP-CGHLVTCKQCAEA----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSCSSCCCB---CCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred CCCCCcCCCCCCCE---EEec-CCCHHHHHHHhhC----CCCCccCCceecCc
Confidence 46799999987554 5678 9999 99999964 47899999998754
No 66
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.08 E-value=4.4e-11 Score=81.55 Aligned_cols=58 Identities=16% Similarity=0.157 Sum_probs=48.2
Q ss_pred CCCcccccccccccccCCceeecCCCCCcccHhhHHHHHcC-CCccccccccccCCCCCCCch
Q 038049 75 SSASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLS-HSSCPTCRQRLKPSDAMPSLD 136 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~-~~~CP~CR~~~~~~~~~~~~~ 136 (141)
..+.-.|+||++.|.++ .++| |||.|+..||..|+.. +.+||.||.++...+..|+..
T Consensus 103 ip~~f~CPI~~elm~DP---V~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~ 161 (179)
T 2f42_A 103 IPDYLCGKISFELMREP---CITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLA 161 (179)
T ss_dssp CCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHH
T ss_pred CcHhhcccCccccCCCC---eECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHH
Confidence 34567899999999876 5677 9999999999999976 457999999998877777643
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.02 E-value=4.6e-11 Score=71.18 Aligned_cols=44 Identities=30% Similarity=0.740 Sum_probs=36.3
Q ss_pred cccccccccccccCCceeecCCCCCc-ccHhhHHHHHcCCCccccccccccCC
Q 038049 78 SAGCAICLLDFIDGDEIRLLPKCNHR-FHVACIDKWLLSHSSCPTCRQRLKPS 129 (141)
Q Consensus 78 ~~~C~ICl~~~~~~~~v~~lp~C~H~-Fh~~Ci~~wl~~~~~CP~CR~~~~~~ 129 (141)
+..|+||++.+.+ ...+| |||. |+..|+..| ..||+||+++...
T Consensus 18 ~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEEEIN---STFCP-CGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred CCEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 4679999988644 46788 9999 999999987 4999999988643
No 68
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.87 E-value=5e-10 Score=80.09 Aligned_cols=56 Identities=23% Similarity=0.425 Sum_probs=44.7
Q ss_pred CCcccccccccccccCCceeecCCCCCcccHhhHHHHHcCC--Ccccc--ccccccCCCCCCC
Q 038049 76 SASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSH--SSCPT--CRQRLKPSDAMPS 134 (141)
Q Consensus 76 ~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~--~~CP~--CR~~~~~~~~~~~ 134 (141)
..+..|+||++.|.++ |+.+. |||.|+..||..|+..+ ..||+ ||+.+...+..++
T Consensus 179 ~~el~CPIcl~~f~DP--Vts~~-CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN 238 (267)
T 3htk_C 179 KIELTCPITCKPYEAP--LISRK-CNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRD 238 (267)
T ss_dssp BCCSBCTTTSSBCSSE--EEESS-SCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEEC
T ss_pred ceeeECcCccCcccCC--eeeCC-CCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcC
Confidence 3456899999999665 44455 99999999999999764 46999 9998877666555
No 69
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.86 E-value=3.3e-10 Score=64.12 Aligned_cols=51 Identities=14% Similarity=0.127 Sum_probs=43.3
Q ss_pred ccccccccccccCCceeec-CCCCCcccHhhHHHHHcCCCccccccccccCCCCCC
Q 038049 79 AGCAICLLDFIDGDEIRLL-PKCNHRFHVACIDKWLLSHSSCPTCRQRLKPSDAMP 133 (141)
Q Consensus 79 ~~C~ICl~~~~~~~~v~~l-p~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~~~~~ 133 (141)
-.|+|+++.+.++ ..+ + +||+|...||.+|+.++.+||+.+.++...+..+
T Consensus 4 ~~CpIs~~~m~dP---V~~~~-sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip 55 (61)
T 2bay_A 4 MLCAISGKVPRRP---VLSPK-SRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVE 55 (61)
T ss_dssp CCCTTTCSCCSSE---EEETT-TTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEE
T ss_pred EEecCCCCCCCCC---EEeCC-CCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEE
Confidence 4699999999865 455 5 9999999999999998888999999998766544
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.84 E-value=4.6e-10 Score=83.85 Aligned_cols=45 Identities=24% Similarity=0.665 Sum_probs=37.7
Q ss_pred CcccccccccccccCCceeecCCCCCc-ccHhhHHHHHcCCCccccccccccCC
Q 038049 77 ASAGCAICLLDFIDGDEIRLLPKCNHR-FHVACIDKWLLSHSSCPTCRQRLKPS 129 (141)
Q Consensus 77 ~~~~C~ICl~~~~~~~~v~~lp~C~H~-Fh~~Ci~~wl~~~~~CP~CR~~~~~~ 129 (141)
++..|+||++.+.+. ..+| |||. ||..|+..| ..||+||+++...
T Consensus 294 ~~~~C~IC~~~~~~~---v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 294 EERTCKVCMDKEVSV---VFIP-CGHLVVCQECAPSL----RKCPICRGIIKGT 339 (345)
T ss_dssp TTCBCTTTSSSBCCE---EEET-TCCEEECTTTGGGC----SBCTTTCCBCCEE
T ss_pred CCCCCCccCCcCCce---EEcC-CCChhHhHHHHhcC----CcCCCCCCCccCe
Confidence 356899999987554 6678 9999 999999988 7899999988643
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.65 E-value=1.9e-08 Score=61.42 Aligned_cols=47 Identities=26% Similarity=0.498 Sum_probs=37.5
Q ss_pred cccccccccccCCceeecCCCCCcccHhhHHHHHc-CCCccccccccccCC
Q 038049 80 GCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLL-SHSSCPTCRQRLKPS 129 (141)
Q Consensus 80 ~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~-~~~~CP~CR~~~~~~ 129 (141)
.|.+|--++. ...|+.| |+|+|+.+|+..|.+ +.++||.||.++..-
T Consensus 3 fC~~C~~Pi~--iygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQRI 50 (101)
T ss_dssp BCTTTCSBCS--EEEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred ecCccCCCeE--EEeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence 4777766653 3458898 999999999999985 468899999988643
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.55 E-value=9.3e-08 Score=68.00 Aligned_cols=50 Identities=30% Similarity=0.690 Sum_probs=40.5
Q ss_pred CcccccccccccccCCceeecCCCCCcccHhhHHHHHcCCC--ccccccccccCC
Q 038049 77 ASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHS--SCPTCRQRLKPS 129 (141)
Q Consensus 77 ~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~--~CP~CR~~~~~~ 129 (141)
...+|.||.+-...+. ..+.|+|.||..|+..|++++. .||.|+.+....
T Consensus 179 ~i~~C~iC~~iv~~g~---~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQ---SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSSCE---ECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCCcCcchhhHHhCCc---ccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 4678999999887662 3334999999999999998754 899999987654
No 73
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=96.92 E-value=0.0023 Score=37.67 Aligned_cols=38 Identities=18% Similarity=0.473 Sum_probs=26.1
Q ss_pred CCCCCcccccccccccccCCceeecCCCCCcccHhhHHHH
Q 038049 73 SPSSASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKW 112 (141)
Q Consensus 73 ~~~~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~w 112 (141)
++...+..|.||- .+..++...-- .|+-+||..|+..-
T Consensus 10 e~~~~D~~C~VC~-~~t~~~l~pCR-vC~RvfH~~CL~r~ 47 (89)
T 1wil_A 10 EPVVNDEMCDVCE-VWTAESLFPCR-VCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCCCSCCCTTTC-CCCSSCCSSCS-SSSSCCCHHHHHHH
T ss_pred cCCCCCcccCccc-cccccceeccc-cccccccHhhcccc
Confidence 3445678899994 44444333222 39999999999985
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=96.83 E-value=0.0014 Score=37.06 Aligned_cols=48 Identities=23% Similarity=0.434 Sum_probs=33.9
Q ss_pred CCCcccccccccccccCCceeecCCCCCcccHhhHHHHHcCCC----ccccccccc
Q 038049 75 SSASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHS----SCPTCRQRL 126 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~----~CP~CR~~~ 126 (141)
......|.||.+. ++ +..-..|...||..|++..+.... .||.|.+..
T Consensus 9 ~~~~~~C~vC~~~---~~-ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 9 LAPGARCGVCGDG---TD-VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CCTTCCCTTTSCC---TT-CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCCCcCCCCCC---Ce-EEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 3445679999742 33 444445999999999998876543 599997654
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.79 E-value=0.0008 Score=41.08 Aligned_cols=34 Identities=15% Similarity=0.325 Sum_probs=26.2
Q ss_pred cccccccccccccCCceeecCCCCCcccHhhHHHH
Q 038049 78 SAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKW 112 (141)
Q Consensus 78 ~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~w 112 (141)
+..|+||++.+..+....-++ |+|.|+..|+..+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHH
Confidence 467999998754444444476 9999999999983
No 76
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=96.03 E-value=0.0056 Score=36.78 Aligned_cols=50 Identities=20% Similarity=0.421 Sum_probs=37.9
Q ss_pred CCcccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccCCC
Q 038049 76 SASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKPSD 130 (141)
Q Consensus 76 ~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~~ 130 (141)
.+-..|--|+-+. ..+..- ..|.+|..|+..-+.....||+|..++..+-
T Consensus 26 ~G~~nCKsCWf~~---k~LV~C--~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl 75 (99)
T 2ko5_A 26 LGPQFCKSCWFEN---KGLVEC--NNHYLCLNCLTLLLSVSNRCPICKMPLPTKL 75 (99)
T ss_dssp SCCCCCCSSCSCC---SSEEEC--SSCEEEHHHHHHTCSSSSEETTTTEECCCCS
T ss_pred cCcccChhhcccc---CCeeee--cchhhHHHHHHHHHhhccCCcccCCcCCcce
Confidence 3345699999553 233321 4599999999999999999999999997663
No 77
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=94.93 E-value=0.023 Score=31.41 Aligned_cols=47 Identities=30% Similarity=0.718 Sum_probs=32.0
Q ss_pred CCCcccccccccccccCCceeecCCCCCcccHhhHHHHHcCC----Ccccccccc
Q 038049 75 SSASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSH----SSCPTCRQR 125 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~----~~CP~CR~~ 125 (141)
..++..|.+|.+. + .+..-..|...||..|+..=+... -.||.|+..
T Consensus 8 ~~~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 8 TDHQDYCEVCQQG---G-EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SCCCSSCTTTSCC---S-SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCCccCCCC---C-cEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 4455779999853 3 333444588999999999754332 249999753
No 78
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=94.61 E-value=0.0086 Score=33.40 Aligned_cols=50 Identities=22% Similarity=0.476 Sum_probs=34.0
Q ss_pred CCCcccccccccccccCCceeecCCCCCcccHhhHHHHHc-----CCCccccccc
Q 038049 75 SSASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLL-----SHSSCPTCRQ 124 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~-----~~~~CP~CR~ 124 (141)
+++...|++|...+.++...+.-..|..=||..|+..-.. ..-.||.|+.
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 3455779999988765444444335888899999875322 2345999976
No 79
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=93.89 E-value=0.021 Score=32.80 Aligned_cols=53 Identities=19% Similarity=0.387 Sum_probs=35.3
Q ss_pred CCCcccccccccccccCCceeecCCCCCcccHhhHHHHHcC----CCccccccccccC
Q 038049 75 SSASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLS----HSSCPTCRQRLKP 128 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~----~~~CP~CR~~~~~ 128 (141)
..+...|.+|..... ++....-..|.--||..|+..-... .-.||.|+..+..
T Consensus 15 ~~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 15 GNQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp SCEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CCCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 344567999987643 4334444458888999999865432 3359999876643
No 80
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=93.80 E-value=0.02 Score=31.66 Aligned_cols=47 Identities=21% Similarity=0.528 Sum_probs=31.0
Q ss_pred CCCcccccccccccccCCceeecCCCCCcccHhhHHHHHcCC----Ccccccccc
Q 038049 75 SSASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSH----SSCPTCRQR 125 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~----~~CP~CR~~ 125 (141)
..++..|.+|.+. ++ +..-..|...||..|+..=+... =.||.|+..
T Consensus 6 d~~~~~C~vC~~~---g~-ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 6 DHHMEFCRVCKDG---GE-LLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp CSSCSSCTTTCCC---SS-CBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred cCCCCcCCCCCCC---CC-EEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 3455779999752 33 33333588999999998644332 249999764
No 81
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=93.79 E-value=0.047 Score=32.52 Aligned_cols=52 Identities=23% Similarity=0.498 Sum_probs=34.6
Q ss_pred CCCcccccccccccccCCceeecCCCCCcccHhhHHHHHcCC----CccccccccccCCC
Q 038049 75 SSASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSH----SSCPTCRQRLKPSD 130 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~----~~CP~CR~~~~~~~ 130 (141)
..++..|.+|.+. ++ +..-..|.-.||..|+..=+..- -.||.|+..-..++
T Consensus 22 d~n~~~C~vC~~~---g~-LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~~~ke 77 (88)
T 1fp0_A 22 DDSATICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDLKE 77 (88)
T ss_dssp SSSSSCCSSSCSS---SC-CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCSSCC
T ss_pred CCCCCcCcCcCCC---CC-EEECCCCCCceecccCCCCCCCCcCCCcCCccccCCCccch
Confidence 4556789999854 33 33434588899999997755432 24999987544433
No 82
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=93.76 E-value=0.11 Score=30.17 Aligned_cols=60 Identities=18% Similarity=0.340 Sum_probs=41.7
Q ss_pred CCCcccccccccccccCCceeecCCCCCcccHhhHHHHHcCC-----CccccccccccCCCCCCC
Q 038049 75 SSASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSH-----SSCPTCRQRLKPSDAMPS 134 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~-----~~CP~CR~~~~~~~~~~~ 134 (141)
......|.+|.+.+++..-|..-..=+|.||-.|-+..++++ -.||-=.+--.....+||
T Consensus 12 ~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG~kCpL~gS~~PW 76 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSGEKCPLVGSNVPW 76 (93)
T ss_dssp SCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTSSCCBCSSSSSBC
T ss_pred CCCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCCCCccccCCCcCch
Confidence 345578999999998876665433456999999999998753 237766554444445555
No 83
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=93.68 E-value=0.016 Score=40.05 Aligned_cols=47 Identities=30% Similarity=0.530 Sum_probs=33.1
Q ss_pred CCcccccccccccccCCceeecCCCCCcccHhhHHHHHcCC----Cccccccccc
Q 038049 76 SASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSH----SSCPTCRQRL 126 (141)
Q Consensus 76 ~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~----~~CP~CR~~~ 126 (141)
.++..|.+|.+. ..+.....|...||..|+..-+... -.||.|+..-
T Consensus 5 ~~~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQNG----GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCCC----EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCC----CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 445779999743 3344555699999999998765542 3499998754
No 84
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=93.43 E-value=0.034 Score=29.38 Aligned_cols=44 Identities=30% Similarity=0.694 Sum_probs=28.3
Q ss_pred cccccccccccCCceeecCCCCCcccHhhHHHHHcCC----Cccccccc
Q 038049 80 GCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSH----SSCPTCRQ 124 (141)
Q Consensus 80 ~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~----~~CP~CR~ 124 (141)
.|.+|...-..+ .+..-..|...||..|+..=+... -.||.|+.
T Consensus 2 ~C~vC~~~~~~~-~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDD-KLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCS-CCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCC-CEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 488887653333 333444599999999997533332 24999865
No 85
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.42 E-value=0.012 Score=31.96 Aligned_cols=46 Identities=26% Similarity=0.681 Sum_probs=30.6
Q ss_pred CCCcccccccccccccCCceeecCCCCCcccHhhHHHHHcCC----Cccccccc
Q 038049 75 SSASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSH----SSCPTCRQ 124 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~----~~CP~CR~ 124 (141)
..++..|.+|.+. ++.+ .-..|...||..|+..=+... -.||.|++
T Consensus 6 ~~~~~~C~vC~~~---g~ll-~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS---GQLL-MCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS---SCCE-ECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC---CeEE-EcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 4456779999863 3333 333599999999998644332 23888864
No 86
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=93.33 E-value=0.34 Score=24.86 Aligned_cols=29 Identities=10% Similarity=0.068 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 038049 6 IMVIVAAMLCALVCALGLHSMLQCVFQCT 34 (141)
Q Consensus 6 ~~~i~~~~l~~~~~~l~~~~~~~~~~~~~ 34 (141)
...+.+.++..+++++.+...++++++++
T Consensus 9 ~~aIA~gVVgGv~~v~ii~~~~~~~~RRR 37 (44)
T 2l2t_A 9 TPLIAAGVIGGLFILVIVGLTFAVYVRRK 37 (44)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cceEEEeehHHHHHHHHHHHHHHHHhhhh
Confidence 33444455544444444444444444433
No 87
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=93.09 E-value=0.029 Score=34.78 Aligned_cols=48 Identities=27% Similarity=0.531 Sum_probs=30.7
Q ss_pred CCCcccccccccccccCCceeecCCCCCcccHhhHHHHHcC----CCcccccc
Q 038049 75 SSASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLS----HSSCPTCR 123 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~----~~~CP~CR 123 (141)
..++..|.+|.+.-+..+.+.-. .|+..||..|+...+.. .-.||.|+
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C~-~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFCT-TCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEECS-SSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCCcCCCCCCCCcCCeECC-CCCCCcChHHhCCccccccccCccCCcCC
Confidence 34567899998663222224444 59999999999887642 22366653
No 88
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=93.08 E-value=0.022 Score=38.49 Aligned_cols=46 Identities=28% Similarity=0.560 Sum_probs=32.1
Q ss_pred CcccccccccccccCCceeecCCCCCcccHhhHHHHHcCC----Cccccccccc
Q 038049 77 ASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSH----SSCPTCRQRL 126 (141)
Q Consensus 77 ~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~----~~CP~CR~~~ 126 (141)
++..|.+|.+. ++ +.....|.-.||..|+..-+... -.||.|+..-
T Consensus 3 ~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG---GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC---SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC---Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 34679999843 43 44444589999999987765542 3499998754
No 89
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=92.96 E-value=0.036 Score=37.61 Aligned_cols=48 Identities=25% Similarity=0.469 Sum_probs=34.3
Q ss_pred ccccccccccccCCc---eeecCCCCCcccHhhHHHH------Hc-----CCCccccccccc
Q 038049 79 AGCAICLLDFIDGDE---IRLLPKCNHRFHVACIDKW------LL-----SHSSCPTCRQRL 126 (141)
Q Consensus 79 ~~C~ICl~~~~~~~~---v~~lp~C~H~Fh~~Ci~~w------l~-----~~~~CP~CR~~~ 126 (141)
..|+||...|.+++. .+.-..|..=||..|+..= +. ..-.||.|+..-
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 569999999988763 4444458899999998531 11 146799998753
No 90
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=92.89 E-value=0.063 Score=44.96 Aligned_cols=57 Identities=25% Similarity=0.225 Sum_probs=48.8
Q ss_pred CcccccccccccccCCceeecCCCC-CcccHhhHHHHHcCCCccccccccccCCCCCCCchh
Q 038049 77 ASAGCAICLLDFIDGDEIRLLPKCN-HRFHVACIDKWLLSHSSCPTCRQRLKPSDAMPSLDE 137 (141)
Q Consensus 77 ~~~~C~ICl~~~~~~~~v~~lp~C~-H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~~~~~~~~~ 137 (141)
++-.|+|=++-+.++ .++| -| +.|-...|..|+.++.+||.=|.++...+..|+...
T Consensus 890 ~~F~cPIs~~lM~DP---Vilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN~~L 947 (968)
T 3m62_A 890 DEFLDPLMYTIMKDP---VILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNEEL 947 (968)
T ss_dssp GGGBCTTTCSBCSSE---EECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHH
T ss_pred HHhCCcchhhHHhCC---eEcC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccccHHH
Confidence 456799999999877 6777 77 589999999999999999999999998888888543
No 91
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=92.49 E-value=0.058 Score=32.10 Aligned_cols=56 Identities=21% Similarity=0.370 Sum_probs=36.0
Q ss_pred CCCccccccccccc-ccCCceeecCCCCCcccHhhHHHHHcC--CCccccccccccCCC
Q 038049 75 SSASAGCAICLLDF-IDGDEIRLLPKCNHRFHVACIDKWLLS--HSSCPTCRQRLKPSD 130 (141)
Q Consensus 75 ~~~~~~C~ICl~~~-~~~~~v~~lp~C~H~Fh~~Ci~~wl~~--~~~CP~CR~~~~~~~ 130 (141)
.+++..|.||.+.- .+.+.+..-..|.-.||..|+..-+.- .=.||.|......+.
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~~ 80 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARPA 80 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSCC
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccchhh
Confidence 34567899998653 223344444468889999999863321 234999987655443
No 92
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=92.49 E-value=0.013 Score=32.29 Aligned_cols=49 Identities=22% Similarity=0.634 Sum_probs=32.7
Q ss_pred CcccccccccccccCCceeecCCCCCcccHhhHHHHHcCC----CccccccccccCC
Q 038049 77 ASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSH----SSCPTCRQRLKPS 129 (141)
Q Consensus 77 ~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~----~~CP~CR~~~~~~ 129 (141)
++..|.+|... ++.+ .-..|...||..|+..=+... -.||.|+.....+
T Consensus 4 ~~~~C~vC~~~---g~ll-~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~~~ 56 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLL-MCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQMLKK 56 (60)
T ss_dssp CCSSCTTTCCC---SSCE-ECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHHHT
T ss_pred CCCCCcCCCCC---CcEE-EcCCCCcCEECCcCCCCcCCCCCCceEChhccChhhch
Confidence 45679999853 4333 333599999999998644332 2499997765433
No 93
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=92.14 E-value=0.057 Score=30.81 Aligned_cols=51 Identities=24% Similarity=0.428 Sum_probs=32.9
Q ss_pred CCCccccccccccc-ccCCceeecCCCCCcccHhhHHHHHcC--CCcccccccc
Q 038049 75 SSASAGCAICLLDF-IDGDEIRLLPKCNHRFHVACIDKWLLS--HSSCPTCRQR 125 (141)
Q Consensus 75 ~~~~~~C~ICl~~~-~~~~~v~~lp~C~H~Fh~~Ci~~wl~~--~~~CP~CR~~ 125 (141)
..++..|.||.+.- .+++.+..-..|.-.||..|+..-..- .=.||.|+..
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 44557799998653 233445454569999999999753221 2248888653
No 94
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.66 E-value=0.027 Score=33.87 Aligned_cols=50 Identities=24% Similarity=0.456 Sum_probs=32.9
Q ss_pred CCCcccccccccccccCCceeecCCCCCcccHhhHHHHHcCC----Ccccccccc
Q 038049 75 SSASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSH----SSCPTCRQR 125 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~----~~CP~CR~~ 125 (141)
..++..|.||...-.. +.+..-..|...||..|+..=+... =.||.|+..
T Consensus 13 ~~~~~~C~vC~~~~~~-~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 13 FIDSYICQVCSRGDED-DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCSSSCCSGGG-GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred ccCCCCCccCCCcCCC-CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 3445679999866433 3344444599999999997533322 249999774
No 95
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=91.23 E-value=0.25 Score=28.51 Aligned_cols=51 Identities=18% Similarity=0.373 Sum_probs=32.5
Q ss_pred CCCcccccccccccccCCceeecCCCCCcccHhhHHHHHc-----CCCccccccccc
Q 038049 75 SSASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLL-----SHSSCPTCRQRL 126 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~-----~~~~CP~CR~~~ 126 (141)
+.....| ||...+.++...+.-..|..=||..|+..--. ..-.||.|+...
T Consensus 9 ~~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 9 ALVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred cCCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 3444556 99888754443333335888899999963211 345699998754
No 96
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=91.14 E-value=0.051 Score=33.74 Aligned_cols=45 Identities=27% Similarity=0.573 Sum_probs=29.9
Q ss_pred cccccccccccCCceeecCCCCCcccHhhHHHHHcCC----Cccccccc
Q 038049 80 GCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSH----SSCPTCRQ 124 (141)
Q Consensus 80 ~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~----~~CP~CR~ 124 (141)
.|.+|.+.-.+++.+..-..|...||..|++.-+... =.||.||.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 5888886533333444444699999999987655432 24999874
No 97
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=91.10 E-value=0.19 Score=28.10 Aligned_cols=36 Identities=28% Similarity=0.566 Sum_probs=25.6
Q ss_pred CCCcccccccccccccCCceeecC-CCCCcccHhhHH
Q 038049 75 SSASAGCAICLLDFIDGDEIRLLP-KCNHRFHVACID 110 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v~~lp-~C~H~Fh~~Ci~ 110 (141)
++....|.+|..++.+++..+.-. .|.-=||..|+.
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 344567999999987776655554 588889999986
No 98
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=90.99 E-value=0.068 Score=29.93 Aligned_cols=46 Identities=28% Similarity=0.611 Sum_probs=31.1
Q ss_pred CCcccccccccccccCCceeecCCCCCcccHhhHHHHHcCC----Ccccccccc
Q 038049 76 SASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSH----SSCPTCRQR 125 (141)
Q Consensus 76 ~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~----~~CP~CR~~ 125 (141)
.++..|.+|.+. ++ +..-..|...||..|+..=+... -.||.|...
T Consensus 6 ~~~~~C~vC~~~---g~-ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDG---GE-LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCC---SS-CEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCCC---CC-EEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 455789999853 33 33444588999999998544332 249999753
No 99
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=90.44 E-value=0.11 Score=31.53 Aligned_cols=47 Identities=26% Similarity=0.475 Sum_probs=30.3
Q ss_pred CCcccccccccccccCCceeecCCCCCcccHhhHHHHHcC---CCccccccc
Q 038049 76 SASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLS---HSSCPTCRQ 124 (141)
Q Consensus 76 ~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~---~~~CP~CR~ 124 (141)
.+...| ||-.....+..|.- ..|.--||..|+..=... .-.||.|+.
T Consensus 26 ~d~vrC-iC~~~~~~~~mi~C-d~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 26 TDVTRC-ICGFTHDDGYMICC-DKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCBCCC-TTSCCSCSSCEEEB-TTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCCEEe-ECCCccCCCcEEEc-CCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 334567 89776555544433 359999999998753221 235999974
No 100
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=89.75 E-value=1.4 Score=24.48 Aligned_cols=18 Identities=11% Similarity=0.052 Sum_probs=8.5
Q ss_pred HHHHHHHhcccccCCchh
Q 038049 26 MLQCVFQCTQRALTEPRQ 43 (141)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~ 43 (141)
.+++..++++|.++..+.
T Consensus 27 cI~ccvkcrhRrrqAeRM 44 (70)
T 2klu_A 27 GIFFSVRSRHRRRQAERM 44 (70)
T ss_dssp HHHHHHHSSCCSSSCTTS
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 333355555555444443
No 101
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=89.56 E-value=0.19 Score=33.42 Aligned_cols=50 Identities=18% Similarity=0.423 Sum_probs=32.9
Q ss_pred CCcccccccccccccCCceeecCCCCCcccHhhHHHHH-----cCCCccccccccc
Q 038049 76 SASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWL-----LSHSSCPTCRQRL 126 (141)
Q Consensus 76 ~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl-----~~~~~CP~CR~~~ 126 (141)
++...| +|.....++.....-..|..-||..|+..-- ...-.||.|+..-
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcchh
Confidence 345678 9998765444444444588899999995321 1245699998743
No 102
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=89.49 E-value=0.59 Score=30.25 Aligned_cols=46 Identities=22% Similarity=0.443 Sum_probs=31.7
Q ss_pred CCCcccccccccccccCCceeecCCCCCcccHhhHHHHHc-----------CCCccccccc
Q 038049 75 SSASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLL-----------SHSSCPTCRQ 124 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~-----------~~~~CP~CR~ 124 (141)
...+..|.+|.+- + .+..-..|...||..|+..=+. ..=.||.|+.
T Consensus 60 Dg~~d~C~vC~~G---G-~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEG---G-NLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCC---S-SEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCC---C-cEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 4456889999843 3 3444445999999999996542 1235999974
No 103
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=89.17 E-value=0.31 Score=25.01 Aligned_cols=21 Identities=19% Similarity=0.156 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 038049 12 AMLCALVCALGLHSMLQCVFQ 32 (141)
Q Consensus 12 ~~l~~~~~~l~~~~~~~~~~~ 32 (141)
.++..+++++.+...++++++
T Consensus 16 gVVgGv~~~~ii~~~~~~~~R 36 (44)
T 2ks1_B 16 GMVGALLLLLVVALGIGLFMR 36 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred ehhHHHHHHHHHHHHHHHHhh
Confidence 333333333333333333444
No 104
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=88.83 E-value=0.5 Score=29.07 Aligned_cols=49 Identities=22% Similarity=0.462 Sum_probs=31.0
Q ss_pred CCCcccccccccccccCCceeecC--CCCCcccHhhHHHHHcCCC----ccccccccccCC
Q 038049 75 SSASAGCAICLLDFIDGDEIRLLP--KCNHRFHVACIDKWLLSHS----SCPTCRQRLKPS 129 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v~~lp--~C~H~Fh~~Ci~~wl~~~~----~CP~CR~~~~~~ 129 (141)
..++..|.+|.+ .+ .+..-. .|...||..|+. |.... .||.|+.....+
T Consensus 12 ~~~~~~C~~C~~---~G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k 66 (107)
T 4gne_A 12 QMHEDYCFQCGD---GG-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSS 66 (107)
T ss_dssp CSSCSSCTTTCC---CS-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCS
T ss_pred CCCCCCCCcCCC---CC-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCCC
Confidence 345577999983 23 333332 388999999998 44322 388877655544
No 105
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=88.78 E-value=0.5 Score=26.78 Aligned_cols=47 Identities=28% Similarity=0.607 Sum_probs=28.4
Q ss_pred CCcccccccccccccCCceeecCC--CC-CcccHhhHHHHHcC----CCcccccccccc
Q 038049 76 SASAGCAICLLDFIDGDEIRLLPK--CN-HRFHVACIDKWLLS----HSSCPTCRQRLK 127 (141)
Q Consensus 76 ~~~~~C~ICl~~~~~~~~v~~lp~--C~-H~Fh~~Ci~~wl~~----~~~CP~CR~~~~ 127 (141)
.+...| ||-... .++ ...-.. |. .-||..|+. |.. +-.||.|+..-.
T Consensus 14 ~~~~~C-~C~~~~-~g~-MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 14 NEPTYC-LCHQVS-YGE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp TSCCCS-TTCCCS-CSS-EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCSS
T ss_pred CCCCEE-ECCCCC-CCC-EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcccc
Confidence 344567 898753 233 323223 55 579999998 333 234999987543
No 106
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=88.76 E-value=0.065 Score=32.97 Aligned_cols=50 Identities=20% Similarity=0.400 Sum_probs=33.9
Q ss_pred ccccccccccccCCceeecC-CCCCcccHhhHHHHH----------cCCCccccccccccC
Q 038049 79 AGCAICLLDFIDGDEIRLLP-KCNHRFHVACIDKWL----------LSHSSCPTCRQRLKP 128 (141)
Q Consensus 79 ~~C~ICl~~~~~~~~v~~lp-~C~H~Fh~~Ci~~wl----------~~~~~CP~CR~~~~~ 128 (141)
..|.||...+.++.....-. .|.-=||.+|+.-=- ..+-.||.|+..-..
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~~ 64 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKEG 64 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCCC
Confidence 46999999986655544443 477779999986321 023459999886543
No 107
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=88.26 E-value=0.28 Score=28.06 Aligned_cols=48 Identities=23% Similarity=0.365 Sum_probs=31.1
Q ss_pred cccccccccccccCCceeecCCCCCcccHhhHHHHH---------cCCCcccccccccc
Q 038049 78 SAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWL---------LSHSSCPTCRQRLK 127 (141)
Q Consensus 78 ~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl---------~~~~~CP~CR~~~~ 127 (141)
...| ||...+..+..|.-- .|..=||..|+..-. ...-.||.|+..-.
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd-~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~ 72 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCD-RCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSG 72 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECS-SSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSC
T ss_pred CCEE-ECCCccCCCCEEEeC-CCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccC
Confidence 4557 898776533334333 588889999985321 24567999987543
No 108
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=87.65 E-value=0.34 Score=26.78 Aligned_cols=53 Identities=23% Similarity=0.515 Sum_probs=34.6
Q ss_pred CCCccccccccccccc-CCceeecCCCCCcccHhhHHHHHc-------CCCcccccccccc
Q 038049 75 SSASAGCAICLLDFID-GDEIRLLPKCNHRFHVACIDKWLL-------SHSSCPTCRQRLK 127 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~-~~~v~~lp~C~H~Fh~~Ci~~wl~-------~~~~CP~CR~~~~ 127 (141)
..++..|.+|...... +..+..-..|.-.||..|+..=+. ..=.||.|+....
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCccc
Confidence 3455779999976432 334444456999999999886331 2235999976543
No 109
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=87.55 E-value=1 Score=28.64 Aligned_cols=46 Identities=22% Similarity=0.465 Sum_probs=31.0
Q ss_pred CCCcccccccccccccCCceeecCCCCCcccHhhHHHHH------c-----CCCccccccc
Q 038049 75 SSASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWL------L-----SHSSCPTCRQ 124 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl------~-----~~~~CP~CR~ 124 (141)
...+..|.+|-+ +..+..-..|-..||..|+..=+ . ..=.|+.|+.
T Consensus 54 Dg~~~~C~vC~d----GG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 54 DGMDEQCRWCAE----GGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp TSCBSSCTTTCC----CSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCcCeecCC----CCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 445677999984 34444444588999999999642 1 1235999965
No 110
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=87.34 E-value=1.9 Score=22.05 Aligned_cols=7 Identities=29% Similarity=0.572 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 038049 9 IVAAMLC 15 (141)
Q Consensus 9 i~~~~l~ 15 (141)
+.+.++.
T Consensus 14 Ia~~vVG 20 (44)
T 2jwa_A 14 IISAVVG 20 (44)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 3333333
No 111
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=87.03 E-value=1.1 Score=27.62 Aligned_cols=33 Identities=21% Similarity=0.444 Sum_probs=22.4
Q ss_pred ccccccccccc-----ccCCceeecCCCCCcccHhhHH
Q 038049 78 SAGCAICLLDF-----IDGDEIRLLPKCNHRFHVACID 110 (141)
Q Consensus 78 ~~~C~ICl~~~-----~~~~~v~~lp~C~H~Fh~~Ci~ 110 (141)
...|.+|+..- ..++.+..-..|+..||..|+.
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 36699998653 1223344444599999999995
No 112
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=86.32 E-value=0.14 Score=34.82 Aligned_cols=45 Identities=27% Similarity=0.570 Sum_probs=30.0
Q ss_pred cccccccccccccCCceeecCCCCCcccHhhHHHHHcC----CCccccccccc
Q 038049 78 SAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLS----HSSCPTCRQRL 126 (141)
Q Consensus 78 ~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~----~~~CP~CR~~~ 126 (141)
+..|.+|.+. ++ +.....|...||..|+..=+.. .-.||.|+..-
T Consensus 2 ~~~C~~C~~~---g~-ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCC---SS-CCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCcCccCCCC---Cc-eeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 3569999843 43 3333358899999999754432 22499998753
No 113
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=85.85 E-value=0.67 Score=27.64 Aligned_cols=46 Identities=28% Similarity=0.629 Sum_probs=27.7
Q ss_pred CcccccccccccccCCceeecCC--CC-CcccHhhHHHHHcC----CCcccccccccc
Q 038049 77 ASAGCAICLLDFIDGDEIRLLPK--CN-HRFHVACIDKWLLS----HSSCPTCRQRLK 127 (141)
Q Consensus 77 ~~~~C~ICl~~~~~~~~v~~lp~--C~-H~Fh~~Ci~~wl~~----~~~CP~CR~~~~ 127 (141)
+...| ||..... ++ ...-.. |. .-||..|+. +.. +-.||.|+..-.
T Consensus 35 e~~yC-iC~~~~~-g~-MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp CCBCS-TTCCBCC-SC-CCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCCS
T ss_pred CCcEE-ECCCCCC-CC-EeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcCC
Confidence 44557 9987642 33 222223 44 569999998 333 235999987543
No 114
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=85.49 E-value=0.1 Score=30.25 Aligned_cols=44 Identities=34% Similarity=0.700 Sum_probs=27.2
Q ss_pred cccccccccccCCceeecCCCCCcccHhhHHHHHcCC-----Cccccccc
Q 038049 80 GCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSH-----SSCPTCRQ 124 (141)
Q Consensus 80 ~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~-----~~CP~CR~ 124 (141)
.|.+|...- +++.+..-..|...||..|+..-|... =.||.|++
T Consensus 28 ~C~vC~~~~-d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCS-CGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCC-CCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 466676543 223344444588999999998655431 35888875
No 115
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=85.36 E-value=0.25 Score=27.99 Aligned_cols=50 Identities=22% Similarity=0.303 Sum_probs=31.8
Q ss_pred CCcccccccccccccCCceeecCCCCCcccHhhHHHHH----cCCCccccccccc
Q 038049 76 SASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWL----LSHSSCPTCRQRL 126 (141)
Q Consensus 76 ~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl----~~~~~CP~CR~~~ 126 (141)
.....| ||.....+++..+.-..|..=||..|+..-- .....||.|+..-
T Consensus 14 ~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 14 NWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELS 67 (72)
T ss_dssp SSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred CcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCC
Confidence 445668 7987765554333433588779999987532 1234599998643
No 116
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=85.34 E-value=0.25 Score=26.13 Aligned_cols=44 Identities=18% Similarity=0.323 Sum_probs=28.7
Q ss_pred cccccccccccCCceeecC-CCCCcccHhhHHHHH----cCCCcccccc
Q 038049 80 GCAICLLDFIDGDEIRLLP-KCNHRFHVACIDKWL----LSHSSCPTCR 123 (141)
Q Consensus 80 ~C~ICl~~~~~~~~v~~lp-~C~H~Fh~~Ci~~wl----~~~~~CP~CR 123 (141)
.|.+|...+.+++..+.-. .|.-=||..|+..-- ..+..||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4778988876555444443 488779999976321 2456688885
No 117
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=85.15 E-value=0.72 Score=26.78 Aligned_cols=52 Identities=21% Similarity=0.427 Sum_probs=31.3
Q ss_pred CCcccccccccccccCCceeecCCCCCcccHhhHHHHHc------CCCcccccccccc
Q 038049 76 SASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLL------SHSSCPTCRQRLK 127 (141)
Q Consensus 76 ~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~------~~~~CP~CR~~~~ 127 (141)
.+...|.+|...|..-..----..||.+|+..|....+. ....|-.|-..+.
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~ 74 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSYPKPVRVCDSCHTLLL 74 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEECCTTCSSCEEECHHHHHHTT
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhCCeeecCCCCCcCEECHHHHHHHH
Confidence 344679999999864321112225999999999765321 1123666655443
No 118
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=85.09 E-value=2.4 Score=22.64 Aligned_cols=23 Identities=17% Similarity=0.176 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 038049 6 IMVIVAAMLCALVCALGLHSMLQ 28 (141)
Q Consensus 6 ~~~i~~~~l~~~~~~l~~~~~~~ 28 (141)
++++++++...+++.++++.++.
T Consensus 13 wiIi~svl~GLllL~li~~~LwK 35 (54)
T 2knc_A 13 WWVLVGVLGGLLLLTILVLAMWK 35 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 119
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=85.00 E-value=3 Score=22.24 Aligned_cols=25 Identities=12% Similarity=0.174 Sum_probs=12.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Q 038049 5 NIMVIVAAMLCALVCALGLHSMLQC 29 (141)
Q Consensus 5 ~~~~i~~~~l~~~~~~l~~~~~~~~ 29 (141)
.++++++++...+++.++++.++.+
T Consensus 9 ~WiIi~svl~GLLLL~Lii~~LwK~ 33 (54)
T 2l8s_A 9 LWVILLSAFAGLLLLMLLILALWKI 33 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444555555555555544444443
No 120
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=84.83 E-value=0.76 Score=25.81 Aligned_cols=43 Identities=28% Similarity=0.512 Sum_probs=30.7
Q ss_pred CcccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccCC
Q 038049 77 ASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKPS 129 (141)
Q Consensus 77 ~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~ 129 (141)
....|+-|-..+...+.+... -|..||.+| ..|-.|+.++...
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~~ 52 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNS--NGELYHEQC--------FVCAQCFQQFPEG 52 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEE--TTEEECTTT--------CCCTTTCCCCGGG
T ss_pred CCCCchhcCCccCCCceEEEe--CccEecccc--------CeECCCCCCCCCC
Confidence 346799999988765554332 577899988 5677888777654
No 121
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=84.52 E-value=0.95 Score=26.70 Aligned_cols=52 Identities=19% Similarity=0.374 Sum_probs=33.1
Q ss_pred CCcccccccccccccCCceeecCCCCCcccHhhHHHHHc-------CCCcccccccccc
Q 038049 76 SASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLL-------SHSSCPTCRQRLK 127 (141)
Q Consensus 76 ~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~-------~~~~CP~CR~~~~ 127 (141)
.+...|.+|...|..-..----..||++|+..|....+. ....|-.|...+.
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~ 65 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILT 65 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHH
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHH
Confidence 344679999998865422111225999999999765331 1244888876654
No 122
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=84.34 E-value=0.85 Score=26.59 Aligned_cols=53 Identities=15% Similarity=0.285 Sum_probs=32.4
Q ss_pred CCcccccccccccccCCceeecCCCCCcccHhhHHHHHc--------CCCccccccccccC
Q 038049 76 SASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLL--------SHSSCPTCRQRLKP 128 (141)
Q Consensus 76 ~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~--------~~~~CP~CR~~~~~ 128 (141)
.+...|.+|...|..-..----..||++|+.+|....+. ....|-.|-..+..
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l~~ 79 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCDACYLALRS 79 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCEEEETTTTEEEEEECCHHHHHHHHT
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCCeEeccCCCCCCCCEECHHHHHHHhh
Confidence 345679999999865322111225999999999765421 12346666555443
No 123
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=84.21 E-value=0.49 Score=25.86 Aligned_cols=43 Identities=28% Similarity=0.438 Sum_probs=29.3
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccc
Q 038049 79 AGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTC 122 (141)
Q Consensus 79 ~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~C 122 (141)
..|--|...+.+. ....-+.|++.|+.+|=.--=++-.+||.|
T Consensus 16 ~~C~~C~~~~~~~-~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQ-HVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTS-EEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCC-ccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 4599999888543 234456799999999933222334679988
No 124
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=84.05 E-value=4.4 Score=23.98 Aligned_cols=52 Identities=21% Similarity=0.364 Sum_probs=35.1
Q ss_pred CcccccccccccccCCc--eeec-CCCCCcccHhhHHHHHc-CCCccccccccccC
Q 038049 77 ASAGCAICLLDFIDGDE--IRLL-PKCNHRFHVACIDKWLL-SHSSCPTCRQRLKP 128 (141)
Q Consensus 77 ~~~~C~ICl~~~~~~~~--v~~l-p~C~H~Fh~~Ci~~wl~-~~~~CP~CR~~~~~ 128 (141)
+...|.||-++...... +.+. ..|+--.|..|++-=.+ .++.||.|.+++..
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 44779999988644322 2221 13666689999875443 47889999999863
No 125
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=83.96 E-value=0.85 Score=25.22 Aligned_cols=41 Identities=24% Similarity=0.542 Sum_probs=29.3
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccCC
Q 038049 79 AGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKPS 129 (141)
Q Consensus 79 ~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~ 129 (141)
..|+-|-..+.+.+.+... -+..||.+| ..|-.|+.+|...
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~~ 46 (72)
T 1wyh_A 6 SGCSACGETVMPGSRKLEY--GGQTWHEHC--------FLCSGCEQPLGSR 46 (72)
T ss_dssp CBCSSSCCBCCSSSCEECS--TTCCEETTT--------CBCTTTCCBTTTS
T ss_pred CCCccCCCccccCccEEEE--CccccCccc--------CeECCCCCcCCCC
Confidence 5699999888765444322 678899988 5678888877654
No 126
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=83.88 E-value=1.3 Score=24.87 Aligned_cols=41 Identities=20% Similarity=0.538 Sum_probs=31.2
Q ss_pred cccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccCC
Q 038049 78 SAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKPS 129 (141)
Q Consensus 78 ~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~ 129 (141)
...|+-|-..+.+++.+.. -+..||.+| ..|..|+.+|...
T Consensus 9 ~~~C~~C~~~I~~~~~v~a---~~~~~H~~C--------F~C~~C~~~L~~~ 49 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSS---LGKDWHKFC--------LKCERCSKTLTPG 49 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEE---TTEEEETTT--------CBCSSSCCBCCTT
T ss_pred CCCCcCCCCEeECCeEEEE---CCeEeeCCC--------CCCCCCCCccCCC
Confidence 4679999998886665542 678899988 5688888888654
No 127
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=83.73 E-value=1.3 Score=24.39 Aligned_cols=39 Identities=33% Similarity=0.721 Sum_probs=26.8
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCcccccccccc
Q 038049 79 AGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLK 127 (141)
Q Consensus 79 ~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~ 127 (141)
..|+-|-..+...+.+... -+..||.+| ..|-.|+.+|.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1x61_A 6 SGCGGCGEDVVGDGAGVVA--LDRVFHVGC--------FVCSTCRAQLR 44 (72)
T ss_dssp CCCSSSCSCCCSSSCCEEC--SSSEECTTT--------CBCSSSCCBCT
T ss_pred CCCccCCCccCCCceEEEE--CCCeEcccC--------CcccccCCcCC
Confidence 5688888877654433322 567888888 56778888774
No 128
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=83.58 E-value=0.51 Score=27.15 Aligned_cols=50 Identities=22% Similarity=0.387 Sum_probs=30.6
Q ss_pred CcccccccccccccCCceeec-CCCCCcccHhhHHHHHc---------CCCcccccccccc
Q 038049 77 ASAGCAICLLDFIDGDEIRLL-PKCNHRFHVACIDKWLL---------SHSSCPTCRQRLK 127 (141)
Q Consensus 77 ~~~~C~ICl~~~~~~~~v~~l-p~C~H~Fh~~Ci~~wl~---------~~~~CP~CR~~~~ 127 (141)
....| ||-.....+..|.-- +.|..=||..|+.---. .+..||.|+..-.
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~ 74 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSG 74 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCS
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcccC
Confidence 44667 898764344333322 04888899999964211 2456999987543
No 129
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=83.51 E-value=0.74 Score=29.05 Aligned_cols=36 Identities=19% Similarity=0.315 Sum_probs=24.0
Q ss_pred CcccccccccccccCCceeecCCCCCcccHhhHHHH
Q 038049 77 ASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKW 112 (141)
Q Consensus 77 ~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~w 112 (141)
+...|.+|...|..-..----..||++||..|....
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 346799999998643211122259999999996543
No 130
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=82.96 E-value=0.26 Score=27.75 Aligned_cols=49 Identities=20% Similarity=0.502 Sum_probs=30.2
Q ss_pred CCCcccccccccccccCCceeecCCCCCcccHhhHHHHHc---CCCcccccccc
Q 038049 75 SSASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLL---SHSSCPTCRQR 125 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~---~~~~CP~CR~~ 125 (141)
..+...| ||..... ++..+.-..|..=||..|+..--. ..-.||.|+.+
T Consensus 16 ~~~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~s 67 (68)
T 3o70_A 16 FQGLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRDS 67 (68)
T ss_dssp TTTCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHTC
T ss_pred CCCceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCCC
Confidence 3445668 9987654 332333335888899999874221 23459998753
No 131
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.88 E-value=0.21 Score=28.90 Aligned_cols=45 Identities=24% Similarity=0.603 Sum_probs=28.7
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHHHcC-----CCccccccc
Q 038049 79 AGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLS-----HSSCPTCRQ 124 (141)
Q Consensus 79 ~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~-----~~~CP~CR~ 124 (141)
..|.+|...- ++..+..-..|...||..|+..=+.. .=.||.|++
T Consensus 27 c~C~vC~~~~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKH-EPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCC-CSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcC-CCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 3688998643 23334444459999999999854332 224888864
No 132
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=82.65 E-value=0.098 Score=32.56 Aligned_cols=49 Identities=22% Similarity=0.541 Sum_probs=31.3
Q ss_pred cccccccccccCCceeecCCCCCcccHhhHHHHHcCC----CccccccccccCC
Q 038049 80 GCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSH----SSCPTCRQRLKPS 129 (141)
Q Consensus 80 ~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~----~~CP~CR~~~~~~ 129 (141)
.|.+|...-..+ .+..-..|...||..|+..=+... =.||.|+..+..+
T Consensus 60 ~C~~C~~~~~~~-~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~~k 112 (114)
T 2kwj_A 60 SCILCGTSENDD-QLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLKEK 112 (114)
T ss_dssp CCTTTTCCTTTT-TEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHHHT
T ss_pred ccCcccccCCCC-ceEEcCCCCccccccccCCCccCCCCCCeECccccchhhcc
Confidence 588887653333 333444599999999998643332 2399997765443
No 133
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=82.62 E-value=0.2 Score=31.60 Aligned_cols=53 Identities=15% Similarity=0.343 Sum_probs=31.9
Q ss_pred CCcccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccC
Q 038049 76 SASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKP 128 (141)
Q Consensus 76 ~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~ 128 (141)
.....|..|-..|..-..---...||.+||..|..........|-.|...+..
T Consensus 17 ~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~~~~ 69 (120)
T 1y02_A 17 GLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFRAT 69 (120)
T ss_dssp ---CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHHHHT
T ss_pred cccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHHHhc
Confidence 34467999999885432111222599999999977665556678888665443
No 134
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=82.54 E-value=0.91 Score=26.87 Aligned_cols=51 Identities=16% Similarity=0.396 Sum_probs=31.8
Q ss_pred CcccccccccccccCCceeecCCCCCcccHhhHHHHHc------CCCcccccccccc
Q 038049 77 ASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLL------SHSSCPTCRQRLK 127 (141)
Q Consensus 77 ~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~------~~~~CP~CR~~~~ 127 (141)
+...|.+|...|..-..--.-..||++|+..|...+.. ....|-.|...+.
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~ 75 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETIS 75 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHHH
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHHH
Confidence 34679999998864322122225999999999776532 1234766665443
No 135
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=82.45 E-value=2 Score=24.59 Aligned_cols=43 Identities=30% Similarity=0.577 Sum_probs=30.8
Q ss_pred CCcccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccCC
Q 038049 76 SASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKPS 129 (141)
Q Consensus 76 ~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~ 129 (141)
.....|+-|-..+.+.+.+.. -+..||.+| ..|-.|+.+|...
T Consensus 13 ~~~~~C~~C~~~I~~~e~v~a---~~~~wH~~C--------F~C~~C~~~L~~~ 55 (82)
T 2co8_A 13 GAGDLCALCGEHLYVLERLCV---NGHFFHRSC--------FRCHTCEATLWPG 55 (82)
T ss_dssp CSSCBCSSSCCBCCTTTBCCB---TTBCCBTTT--------CBCSSSCCBCCTT
T ss_pred CCCCCCcccCCCcccceEEEE---CCCeeCCCc--------CEEcCCCCCcCCC
Confidence 344679999988876655542 578899998 5677777776544
No 136
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=82.36 E-value=1.1 Score=25.38 Aligned_cols=33 Identities=18% Similarity=0.278 Sum_probs=22.5
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHH
Q 038049 79 AGCAICLLDFIDGDEIRLLPKCNHRFHVACIDK 111 (141)
Q Consensus 79 ~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~ 111 (141)
..|.+|...|..-..----..||.+|+..|-..
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 479999998864321111225999999999653
No 137
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=82.35 E-value=1.5 Score=24.26 Aligned_cols=42 Identities=26% Similarity=0.536 Sum_probs=29.5
Q ss_pred ccccccccccccc--CCceeecCCCCCcccHhhHHHHHcCCCccccccccccCC
Q 038049 78 SAGCAICLLDFID--GDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKPS 129 (141)
Q Consensus 78 ~~~C~ICl~~~~~--~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~ 129 (141)
...|+-|-..+.. ++.+... -+..||.+| ..|-.|+.+|...
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~a--~~~~wH~~C--------F~C~~C~~~L~~~ 48 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYISF--EERQWHNDC--------FNCKKCSLSLVGR 48 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEEC--SSCEECTTT--------CBCSSSCCBCTTS
T ss_pred CCCCcCCCccccCCCCcceEEE--CCcccCccc--------CEeccCCCcCCCC
Confidence 3669999988875 3333322 678899988 5688888887643
No 138
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=82.20 E-value=1.7 Score=24.77 Aligned_cols=42 Identities=26% Similarity=0.595 Sum_probs=31.3
Q ss_pred CCcccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccC
Q 038049 76 SASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKP 128 (141)
Q Consensus 76 ~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~ 128 (141)
.....|+-|-..+.+++.+.. -+..||.+| ..|-.|+.+|..
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~~ 54 (80)
T 2dj7_A 13 RGPSHCAGCKEEIKHGQSLLA---LDKQWHVSC--------FKCQTCSVILTG 54 (80)
T ss_dssp SSCSCCTTTCCCCSSSCCEEE---TTEEECTTT--------CBCSSSCCBCSS
T ss_pred CCCCCCcCcCCeeCCCeEEEE---CCccccccc--------CCcCcCCCCcCC
Confidence 345679999998876665543 568899988 668888888763
No 139
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=81.59 E-value=0.91 Score=25.10 Aligned_cols=41 Identities=22% Similarity=0.538 Sum_probs=29.1
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccCC
Q 038049 79 AGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKPS 129 (141)
Q Consensus 79 ~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~ 129 (141)
..|+-|-..+.+.+.+... -+..||.+| ..|-.|+.+|...
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~~ 46 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEY--KGSSWHETC--------FICHRCQQPIGTK 46 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEE--TTEEEETTT--------TCCSSSCCCCCSS
T ss_pred CCCccCCCcccCCceEEEE--CcCeecccC--------CcccccCCccCCC
Confidence 5699999888766544332 567899888 4577888777654
No 140
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=81.44 E-value=0.48 Score=25.85 Aligned_cols=43 Identities=33% Similarity=0.685 Sum_probs=25.8
Q ss_pred CcccccccccccccCCceeecCC--CC-CcccHhhHHHHHcC----CCccccccc
Q 038049 77 ASAGCAICLLDFIDGDEIRLLPK--CN-HRFHVACIDKWLLS----HSSCPTCRQ 124 (141)
Q Consensus 77 ~~~~C~ICl~~~~~~~~v~~lp~--C~-H~Fh~~Ci~~wl~~----~~~CP~CR~ 124 (141)
+...| ||.... .+ ....-.. |. .-||..|+. +.. +-.||.|++
T Consensus 9 e~~~C-~C~~~~-~g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVS-YG-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcC-CC-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 34556 898753 23 3333334 44 579999998 433 234999865
No 141
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=81.43 E-value=0.16 Score=30.08 Aligned_cols=51 Identities=18% Similarity=0.525 Sum_probs=34.2
Q ss_pred Cccccccccccccc-CCceeecCCCCCcccHhhHHHHHcC--------CCcccccccccc
Q 038049 77 ASAGCAICLLDFID-GDEIRLLPKCNHRFHVACIDKWLLS--------HSSCPTCRQRLK 127 (141)
Q Consensus 77 ~~~~C~ICl~~~~~-~~~v~~lp~C~H~Fh~~Ci~~wl~~--------~~~CP~CR~~~~ 127 (141)
.+..|.+|...-.. +..+..-..|...||..|+..=+.. .=.||.|+....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 35679999865332 2344444469999999999865431 235999987654
No 142
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.34 E-value=1.1 Score=26.08 Aligned_cols=36 Identities=19% Similarity=0.359 Sum_probs=23.5
Q ss_pred CCcccccccccccccCCceeecCCCCCcccHhhHHH
Q 038049 76 SASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDK 111 (141)
Q Consensus 76 ~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~ 111 (141)
.+...|.+|...|..-..----..||.+|+..|...
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 344679999998854321111124999999999654
No 143
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=81.27 E-value=1.2 Score=27.53 Aligned_cols=34 Identities=21% Similarity=0.343 Sum_probs=22.6
Q ss_pred cccccccccccc------CCceeecCCCCCcccHhhHHHH
Q 038049 79 AGCAICLLDFID------GDEIRLLPKCNHRFHVACIDKW 112 (141)
Q Consensus 79 ~~C~ICl~~~~~------~~~v~~lp~C~H~Fh~~Ci~~w 112 (141)
..|.+|++.-.. ++.+..-..|+..||..|+...
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 459999875421 2233333359999999999754
No 144
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=80.67 E-value=0.28 Score=27.77 Aligned_cols=44 Identities=34% Similarity=0.718 Sum_probs=27.2
Q ss_pred cccccccccccCCceeecCCCCCcccHhhHHHHHcC-----CCccccccc
Q 038049 80 GCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLS-----HSSCPTCRQ 124 (141)
Q Consensus 80 ~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~-----~~~CP~CR~ 124 (141)
.|.+|...- ++..+..-..|...||..|+..=+.. .=.||.|+.
T Consensus 20 ~C~~C~~~~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCS-CGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcC-CCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 466777542 23334444458899999999854432 224888864
No 145
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=79.88 E-value=1.6 Score=24.71 Aligned_cols=41 Identities=22% Similarity=0.559 Sum_probs=30.3
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccCC
Q 038049 79 AGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKPS 129 (141)
Q Consensus 79 ~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~ 129 (141)
..|+-|-..+.+++.+... -+..||.+| ..|-.|+++|...
T Consensus 16 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~~ 56 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNVEY--KGTVWHKDC--------FTCSNCKQVIGTG 56 (82)
T ss_dssp CBCSSSCCBCCSSSCEEEC--SSCEEETTT--------CCCSSSCCCCTTS
T ss_pred CcCccCCcccccCceEEEE--Ccccccccc--------CchhhCCCccCCC
Confidence 5799999988766654332 578899988 5678888877654
No 146
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=79.79 E-value=1 Score=25.29 Aligned_cols=8 Identities=25% Similarity=0.837 Sum_probs=3.9
Q ss_pred CCcccHhh
Q 038049 101 NHRFHVAC 108 (141)
Q Consensus 101 ~H~Fh~~C 108 (141)
+..||.+|
T Consensus 20 ~~~~H~~C 27 (76)
T 1iml_A 20 GKDWHRPC 27 (76)
T ss_dssp TEEEETTT
T ss_pred CccccCCC
Confidence 44455544
No 147
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=79.57 E-value=0.68 Score=25.17 Aligned_cols=43 Identities=35% Similarity=0.692 Sum_probs=26.4
Q ss_pred CcccccccccccccCCceeecCC--CC-CcccHhhHHHHHcC----CCccccccc
Q 038049 77 ASAGCAICLLDFIDGDEIRLLPK--CN-HRFHVACIDKWLLS----HSSCPTCRQ 124 (141)
Q Consensus 77 ~~~~C~ICl~~~~~~~~v~~lp~--C~-H~Fh~~Ci~~wl~~----~~~CP~CR~ 124 (141)
+...| ||-... .+ ....-.. |. .-||..|+. +.. +-.||.|++
T Consensus 8 e~~yC-~C~~~~-~g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVS-YG-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCC-CC-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 34557 898763 23 3333334 55 589999998 333 234999965
No 148
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=78.75 E-value=0.47 Score=33.13 Aligned_cols=45 Identities=31% Similarity=0.637 Sum_probs=25.3
Q ss_pred cccccccccccCCceeecCCCCCcccHhhHHHHHcC-----CCcccccccc
Q 038049 80 GCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLS-----HSSCPTCRQR 125 (141)
Q Consensus 80 ~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~-----~~~CP~CR~~ 125 (141)
.|.+|...-. ++.+..-..|...||..|+..=+.. .=.||.|+..
T Consensus 176 ~C~vC~~~~~-~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 176 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp SCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCcCCCCCCC-CCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 5888875422 2333344459999999999854432 1249999753
No 149
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=78.47 E-value=0.3 Score=30.00 Aligned_cols=45 Identities=22% Similarity=0.504 Sum_probs=28.7
Q ss_pred cccccccccccCCceeecCCCCCcccHhhHHHHHcC----CCcccccccc
Q 038049 80 GCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLS----HSSCPTCRQR 125 (141)
Q Consensus 80 ~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~----~~~CP~CR~~ 125 (141)
.|.+|...-.+ +.+..-..|...||..|+..=+.. .-.||.|+.-
T Consensus 56 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGED-SKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCC-TTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCC-CCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 47778655322 334444469999999999864433 2248888653
No 150
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=78.34 E-value=2.9 Score=24.12 Aligned_cols=21 Identities=19% Similarity=0.265 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 038049 8 VIVAAMLCALVCALGLHSMLQ 28 (141)
Q Consensus 8 ~i~~~~l~~~~~~l~~~~~~~ 28 (141)
+++++++.++++.+++++++.
T Consensus 13 Iv~gvi~gilliGllllliwk 33 (79)
T 2knc_B 13 VLLSVMGAILLIGLAALLIWK 33 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 151
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=78.27 E-value=1.8 Score=24.20 Aligned_cols=40 Identities=23% Similarity=0.589 Sum_probs=27.6
Q ss_pred cccccccccccc--CCceeecCCCCCcccHhhHHHHHcCCCccccccccccC
Q 038049 79 AGCAICLLDFID--GDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKP 128 (141)
Q Consensus 79 ~~C~ICl~~~~~--~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~ 128 (141)
..|+-|-..+.+ ++..... -+..||.+| ..|-.|+.+|..
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a--~~~~wH~~C--------F~C~~C~~~L~~ 47 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICF--QDSQWHSEC--------FNCGKCSVSLVG 47 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEE--TTEEEEGGG--------CBCTTTCCBCSS
T ss_pred CCCccCCCcccCCCCceeEEE--CCcccCccc--------CChhhCCCcCCC
Confidence 569999988875 3333222 678899998 567777777753
No 152
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=76.66 E-value=2.3 Score=23.68 Aligned_cols=33 Identities=27% Similarity=0.517 Sum_probs=25.7
Q ss_pred CCCcccccccccccccCCceeecCCC-CCcccHhhHHHH
Q 038049 75 SSASAGCAICLLDFIDGDEIRLLPKC-NHRFHVACIDKW 112 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v~~lp~C-~H~Fh~~Ci~~w 112 (141)
.++..-|.||.++ ..++-+. | |-+||..|..+-
T Consensus 5 ~ee~pWC~ICneD----AtlrC~g-CdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 5 SSGLPWCCICNED----ATLRCAG-CDGDLYCARCFREG 38 (67)
T ss_dssp CCCCSSCTTTCSC----CCEEETT-TTSEEECSSHHHHH
T ss_pred CcCCCeeEEeCCC----CeEEecC-CCCceehHHHHHHH
Confidence 3445679999855 5678886 9 799999998875
No 153
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=76.16 E-value=1.3 Score=30.47 Aligned_cols=35 Identities=20% Similarity=0.395 Sum_probs=23.8
Q ss_pred cccccccccccccCCceeecCCCCCcccHhhHHHH
Q 038049 78 SAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKW 112 (141)
Q Consensus 78 ~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~w 112 (141)
+..|.+|...|.--..---...||++||..|-...
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 46899999988643211122259999999996543
No 154
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=76.04 E-value=0.79 Score=21.39 Aligned_cols=28 Identities=21% Similarity=0.431 Sum_probs=19.2
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhH
Q 038049 79 AGCAICLLDFIDGDEIRLLPKCNHRFHVACI 109 (141)
Q Consensus 79 ~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci 109 (141)
..|+.|-......+.+. . -|..||..|+
T Consensus 4 ~~C~~C~k~Vy~~Ek~~--~-~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN--C-LDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCC--S-SSSCCCGGGC
T ss_pred CcCCccCCEEecceeEE--E-CCeEecccCC
Confidence 46888887766555443 2 6788998884
No 155
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=75.94 E-value=1.2 Score=25.35 Aligned_cols=48 Identities=21% Similarity=0.432 Sum_probs=30.1
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHHHc-----CCCcccccccccc
Q 038049 79 AGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLL-----SHSSCPTCRQRLK 127 (141)
Q Consensus 79 ~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~-----~~~~CP~CR~~~~ 127 (141)
..| ||...+..+...+.-..|.-=||..|+..--. ..-.||.|+....
T Consensus 11 ~yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~~ 63 (75)
T 3kqi_A 11 VYC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTHG 63 (75)
T ss_dssp EET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHHC
T ss_pred eEE-ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcccCC
Confidence 444 89877654433334335887899999964321 2345999987543
No 156
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=75.93 E-value=1.1 Score=25.45 Aligned_cols=41 Identities=24% Similarity=0.602 Sum_probs=28.9
Q ss_pred cccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccCC
Q 038049 78 SAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKPS 129 (141)
Q Consensus 78 ~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~ 129 (141)
...|+.|-..+.+++.+.. -+..||.+| ..|-.|+.+|...
T Consensus 7 ~~~C~~C~~~I~~~~~~~a---~~~~~H~~C--------F~C~~C~~~L~~~ 47 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQC---DGRSFHRCC--------FLCMVCRKNLDST 47 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEE---TTEEEESSS--------EECSSSCCEECSS
T ss_pred CCcCcCcCccccCceeEEe---CCccccccc--------CccCCCCCCCCCC
Confidence 3669999988876664432 677899888 4577888877654
No 157
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=75.81 E-value=2.6 Score=29.26 Aligned_cols=50 Identities=20% Similarity=0.424 Sum_probs=31.3
Q ss_pred cccccccccccccCCceeecCCCCCcccHhhHHHHHc--------CCCcccccccccc
Q 038049 78 SAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLL--------SHSSCPTCRQRLK 127 (141)
Q Consensus 78 ~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~--------~~~~CP~CR~~~~ 127 (141)
+..|.+|...|..-..-.-...||++||..|-..... ....|-.|...+.
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l~ 221 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQLN 221 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHHHHC
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHHHhh
Confidence 4689999998864322112225999999999765431 1234766665544
No 158
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=75.79 E-value=0.26 Score=26.88 Aligned_cols=38 Identities=24% Similarity=0.501 Sum_probs=21.0
Q ss_pred CCCCcccccccc-cccccCCceeecCCCCCcccHhhHHHH
Q 038049 74 PSSASAGCAICL-LDFIDGDEIRLLPKCNHRFHVACIDKW 112 (141)
Q Consensus 74 ~~~~~~~C~ICl-~~~~~~~~v~~lp~C~H~Fh~~Ci~~w 112 (141)
..++...|.||+ ..|.++-.-.-.. |.-.|+..|-..|
T Consensus 5 ~~~d~~~C~iC~KTKFADG~Gh~C~y-Ck~r~CaRCGg~v 43 (62)
T 2a20_A 5 QKGDAPTCGICHKTKFADGCGHNCSY-CQTKFCARCGGRV 43 (62)
T ss_dssp CSSCCCCCSSSSCSCCCSSCCEEBTT-TCCEECTTSEEEE
T ss_pred ccCCcchhhhhccceeccCCCccccc-cCCeeecccCCEe
Confidence 456668899998 4455553222232 4445555554444
No 159
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=75.00 E-value=4.4 Score=22.84 Aligned_cols=41 Identities=17% Similarity=0.349 Sum_probs=29.2
Q ss_pred CcccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccCC
Q 038049 77 ASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKPS 129 (141)
Q Consensus 77 ~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~ 129 (141)
....|+-|-..+. ++.+ . .-+..||.+| ..|-.|+.+|...
T Consensus 14 ~~~~C~~C~~~I~-~~~v--~-a~~~~~H~~C--------F~C~~C~~~L~~~ 54 (79)
T 2cor_A 14 GKYICQKCHAIID-EQPL--I-FKNDPYHPDH--------FNCANCGKELTAD 54 (79)
T ss_dssp CCCBCTTTCCBCC-SCCC--C-CSSSCCCTTT--------SBCSSSCCBCCTT
T ss_pred CCCCCccCCCEec-ceEE--E-ECcceeCCCC--------CEeCCCCCccCCC
Confidence 3467999998887 3222 2 2678899988 5788888887654
No 160
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=74.43 E-value=0.79 Score=25.19 Aligned_cols=43 Identities=28% Similarity=0.641 Sum_probs=26.1
Q ss_pred CcccccccccccccCCceeecCC--CC-CcccHhhHHHHHcC----CCccccccc
Q 038049 77 ASAGCAICLLDFIDGDEIRLLPK--CN-HRFHVACIDKWLLS----HSSCPTCRQ 124 (141)
Q Consensus 77 ~~~~C~ICl~~~~~~~~v~~lp~--C~-H~Fh~~Ci~~wl~~----~~~CP~CR~ 124 (141)
+...| +|-... .++ ...-.. |. .-||..|+. +.. +-.||.|+.
T Consensus 10 e~~yC-~C~~~~-~g~-MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 10 EPTYC-LCNQVS-YGE-MIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CCEET-TTTEEC-CSE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CCcEE-ECCCCC-CCC-eeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 34557 898753 332 333334 44 789999998 322 235999975
No 161
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=72.90 E-value=1.8 Score=27.70 Aligned_cols=34 Identities=12% Similarity=0.249 Sum_probs=23.5
Q ss_pred CCccccccccccccc--CCceeecCCCCCcccHhhHH
Q 038049 76 SASAGCAICLLDFID--GDEIRLLPKCNHRFHVACID 110 (141)
Q Consensus 76 ~~~~~C~ICl~~~~~--~~~v~~lp~C~H~Fh~~Ci~ 110 (141)
.++..|.+|...|.- +....-. .|.|.+|..|=.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~-~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCE-DCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECT-TTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCC-CCCcccccccCC
Confidence 456889999999842 2233334 499999988844
No 162
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.88 E-value=2.9 Score=23.65 Aligned_cols=41 Identities=22% Similarity=0.433 Sum_probs=28.3
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccCC
Q 038049 79 AGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKPS 129 (141)
Q Consensus 79 ~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~ 129 (141)
..|+-|-..+..++.+.. .=+..||.+| ..|-.|+.+|...
T Consensus 16 ~~C~~C~~~I~~~~~~~~--a~~~~~H~~C--------F~C~~C~~~L~~~ 56 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRELF--YEDRHFHEGC--------FRCCRCQRSLADE 56 (82)
T ss_dssp CBCTTTCCBCCSSCCBCC--CSSCCCBTTT--------SBCTTTCCBCSSC
T ss_pred CcCccCCCccccCcEEEE--eCCccccccC--------CeecCCCCccCCC
Confidence 579999988874333322 1578899988 5677888877643
No 163
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=72.88 E-value=2.1 Score=23.37 Aligned_cols=42 Identities=26% Similarity=0.536 Sum_probs=31.1
Q ss_pred cccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccCC
Q 038049 78 SAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKPS 129 (141)
Q Consensus 78 ~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~ 129 (141)
...|+-|-..+...+.+... =+..||.+|+ .|-.|..++...
T Consensus 11 ~~~C~~C~~~i~~~e~~~~~--~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEEE--TTEEEETTTS--------SCTTTCCCCGGG
T ss_pred CccchhcCccccCCceEEEe--CcCeeCcCCC--------cccCCCCCCCCC
Confidence 36799999988777655332 5778999884 688888887654
No 164
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=72.70 E-value=5.1 Score=23.17 Aligned_cols=41 Identities=20% Similarity=0.536 Sum_probs=29.7
Q ss_pred cccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccCC
Q 038049 78 SAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKPS 129 (141)
Q Consensus 78 ~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~ 129 (141)
...|+-|-..+.+.+.+. . -+..||.+| ..|-.|..+|...
T Consensus 15 ~~~C~~C~~~I~~~~~v~--a-~~~~~H~~C--------F~C~~C~~~L~~~ 55 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLL--A-NQQVFHISC--------FRCSYCNNKLSLG 55 (91)
T ss_dssp SCBCTTTCCBCCTTSEEE--C-SSSEEETTT--------CBCTTTCCBCCTT
T ss_pred CCcCccCCCccCCceeEE--E-CCCEECCCC--------CeeCCCCCCCCCC
Confidence 467999998887665542 2 678899988 4577777777654
No 165
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=72.61 E-value=3.7 Score=23.07 Aligned_cols=39 Identities=21% Similarity=0.433 Sum_probs=27.7
Q ss_pred CcccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCcccccccccc
Q 038049 77 ASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLK 127 (141)
Q Consensus 77 ~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~ 127 (141)
....|+-|-..+.. + . +.. -+..||.+|+ .|-.|+.+|.
T Consensus 14 ~~~~C~~C~~~I~~-~-~-~~a-~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 14 KLPMCDKCGTGIVG-V-F-VKL-RDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCCSSSCCCCCS-S-C-EEC-SSCEECTTTT--------SCSSSCCCHH
T ss_pred CCCccccCCCCccC-c-E-EEE-CcceeCcCcC--------eeCCCCCCCC
Confidence 34679999988765 2 2 232 6789999984 5777877764
No 166
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=72.22 E-value=4.4 Score=20.40 Aligned_cols=13 Identities=23% Similarity=0.406 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 038049 6 IMVIVAAMLCALV 18 (141)
Q Consensus 6 ~~~i~~~~l~~~~ 18 (141)
+++++..++..++
T Consensus 10 ~wiIi~s~l~GLl 22 (42)
T 2k1a_A 10 IWWVLVGVLGGLL 22 (42)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 3444444333333
No 167
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=72.12 E-value=0.89 Score=27.81 Aligned_cols=27 Identities=26% Similarity=0.556 Sum_probs=17.3
Q ss_pred CCCCcccHhhHHHHHcCCCccccccccccCCC
Q 038049 99 KCNHRFHVACIDKWLLSHSSCPTCRQRLKPSD 130 (141)
Q Consensus 99 ~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~~ 130 (141)
.||+.|. .=+.....||.|+..-.++.
T Consensus 72 ~CG~~F~-----~~~~kPsrCP~CkSe~Ie~P 98 (105)
T 2gmg_A 72 KCGFVFK-----AEINIPSRCPKCKSEWIEEP 98 (105)
T ss_dssp TTCCBCC-----CCSSCCSSCSSSCCCCBCCC
T ss_pred hCcCeec-----ccCCCCCCCcCCCCCccCCc
Confidence 4999991 11233467999998655443
No 168
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=71.81 E-value=4.5 Score=21.98 Aligned_cols=39 Identities=26% Similarity=0.652 Sum_probs=27.4
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccCC
Q 038049 79 AGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKPS 129 (141)
Q Consensus 79 ~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~ 129 (141)
..|+-|-..+... . +.. -+..||.+| ..|-.|+.+|...
T Consensus 6 ~~C~~C~~~I~~~-~--~~a-~~~~~H~~C--------F~C~~C~~~L~~~ 44 (70)
T 2d8z_A 6 SGCVQCKKPITTG-G--VTY-REQPWHKEC--------FVCTACRKQLSGQ 44 (70)
T ss_dssp CBCSSSCCBCCSS-E--EES-SSSEEETTT--------SBCSSSCCBCTTS
T ss_pred CCCcccCCeeccc-e--EEE-CccccCCCC--------CccCCCCCcCCcC
Confidence 5699998887643 2 232 678899888 5688888887543
No 169
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=70.47 E-value=7 Score=22.44 Aligned_cols=42 Identities=19% Similarity=0.376 Sum_probs=30.0
Q ss_pred CCcccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccCC
Q 038049 76 SASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKPS 129 (141)
Q Consensus 76 ~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~ 129 (141)
.....|+-|-..+.. +. +.. -+..||.+| ..|-.|+..|...
T Consensus 23 ~~~~~C~~C~~~I~~-~~--~~a-~~~~~H~~C--------F~C~~C~~~L~~~ 64 (89)
T 1x64_A 23 QRMPLCDKCGSGIVG-AV--VKA-RDKYRHPEC--------FVCADCNLNLKQK 64 (89)
T ss_dssp CSCCBCTTTCCBCCS-CC--EES-SSCEECTTT--------CCCSSSCCCTTTS
T ss_pred CcCCCcccCCCEecc-cE--EEE-CCceECccC--------CEecCCCCCCCCC
Confidence 344679999988775 22 222 678999998 5688888887654
No 170
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=70.21 E-value=6.5 Score=21.82 Aligned_cols=29 Identities=17% Similarity=0.440 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 038049 7 MVIVAAMLCALVCALGLHSMLQCVFQCTQ 35 (141)
Q Consensus 7 ~~i~~~~l~~~~~~l~~~~~~~~~~~~~~ 35 (141)
.-+-+.++.++++++++++++.--.+|..
T Consensus 17 LRigGLifA~vLfi~GI~iilS~kcrCk~ 45 (67)
T 2jp3_A 17 LQLGGLIFGGLLCIAGIALALSGKCKCRR 45 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred heecchhhHHHHHHHHHHHHHcCcccccC
Confidence 34445555566666666666644444433
No 171
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=69.98 E-value=5.3 Score=26.27 Aligned_cols=37 Identities=27% Similarity=0.546 Sum_probs=26.4
Q ss_pred CCCcccccccccccccCCceeecC--CCCCcccHhhHHHHHcC
Q 038049 75 SSASAGCAICLLDFIDGDEIRLLP--KCNHRFHVACIDKWLLS 115 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v~~lp--~C~H~Fh~~Ci~~wl~~ 115 (141)
.+.+..|.||-+ +..+..-. .|...|+..||+..+..
T Consensus 76 DG~~~yC~wC~~----Gg~l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 76 DGYQSYCTICCG----GREVLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp TSSBSSCTTTSC----CSEEEECSSTTTCCEEEHHHHHHHTCT
T ss_pred CCCcceeeEecC----CCeEEeeCCCCCCCchhHHHHHHhcCH
Confidence 445678999974 34444433 48899999999998854
No 172
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=69.27 E-value=3.4 Score=23.02 Aligned_cols=41 Identities=22% Similarity=0.461 Sum_probs=29.6
Q ss_pred cccccccccccc---CCceeecCCCCCcccHhhHHHHHcCCCccccccccccCC
Q 038049 79 AGCAICLLDFID---GDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKPS 129 (141)
Q Consensus 79 ~~C~ICl~~~~~---~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~ 129 (141)
..|+-|-..+.+ ++..... =+..||.+| ..|-.|+.+|...
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~~ 59 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVVAY--EGQSWHDYC--------FHCKKCSVNLANK 59 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEEEE--TTEEEETTT--------CBCSSSCCBCTTS
T ss_pred ccCcccCCcccCCCCCceeEEE--CcceeCccc--------CEehhcCCCCCCC
Confidence 569999988875 3333322 578899988 5688999888644
No 173
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=69.18 E-value=3.2 Score=25.66 Aligned_cols=9 Identities=33% Similarity=0.586 Sum_probs=4.2
Q ss_pred ccccccccc
Q 038049 81 CAICLLDFI 89 (141)
Q Consensus 81 C~ICl~~~~ 89 (141)
|+-|-..+.
T Consensus 11 C~~C~~~I~ 19 (123)
T 2l3k_A 11 CASCDKRIR 19 (123)
T ss_dssp CSSSSCCCC
T ss_pred ccCCCCeec
Confidence 444444443
No 174
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=68.84 E-value=0.6 Score=26.08 Aligned_cols=49 Identities=22% Similarity=0.426 Sum_probs=28.1
Q ss_pred CCcccccccccccccCCceeec-CCCCCcccHhhHHHHHc--------CCCcccccccc
Q 038049 76 SASAGCAICLLDFIDGDEIRLL-PKCNHRFHVACIDKWLL--------SHSSCPTCRQR 125 (141)
Q Consensus 76 ~~~~~C~ICl~~~~~~~~v~~l-p~C~H~Fh~~Ci~~wl~--------~~~~CP~CR~~ 125 (141)
++...| ||-.....+..|.-- +.|..=||..|+.---. .+-.||.||.+
T Consensus 8 e~~v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~~ 65 (68)
T 2rsd_A 8 EAKVRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRLS 65 (68)
T ss_dssp SCEECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHHH
T ss_pred CCCEEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccCc
Confidence 334567 797654444433321 13777799999842110 13459999853
No 175
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=68.65 E-value=3.6 Score=22.42 Aligned_cols=40 Identities=30% Similarity=0.600 Sum_probs=27.9
Q ss_pred cccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccCC
Q 038049 78 SAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKPS 129 (141)
Q Consensus 78 ~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~ 129 (141)
...|+-|-..+.. +.+. . -+..||.+| ..|-.|+.+|...
T Consensus 5 ~~~C~~C~~~I~~-~~~~--a-~~~~~H~~C--------F~C~~C~~~L~~~ 44 (70)
T 2d8x_A 5 SSGCHQCGEFIIG-RVIK--A-MNNSWHPEC--------FRCDLCQEVLADI 44 (70)
T ss_dssp SSBCSSSCCBCCS-CCEE--E-TTEEECTTT--------SBCSSSCCBCSSS
T ss_pred CCcCccCCCEecc-eEEE--E-CcccccccC--------CEeCCCCCcCCCC
Confidence 3569999888763 3222 2 577899988 4688888877654
No 176
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=68.49 E-value=1.4 Score=20.27 Aligned_cols=13 Identities=23% Similarity=0.697 Sum_probs=8.8
Q ss_pred CCccccccccccC
Q 038049 116 HSSCPTCRQRLKP 128 (141)
Q Consensus 116 ~~~CP~CR~~~~~ 128 (141)
+..||+|+..+..
T Consensus 3 k~~CpvCk~q~Pd 15 (28)
T 2jvx_A 3 DFCCPKCQYQAPD 15 (28)
T ss_dssp CEECTTSSCEESS
T ss_pred cccCccccccCcC
Confidence 3468888876654
No 177
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=68.47 E-value=4.5 Score=23.79 Aligned_cols=45 Identities=20% Similarity=0.420 Sum_probs=24.2
Q ss_pred cccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccCC
Q 038049 80 GCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKPS 129 (141)
Q Consensus 80 ~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~ 129 (141)
.|..|...+.... ... .=|..|+..|... .....|..|..++.+.
T Consensus 35 ~C~~C~~~L~~~~-~~~--~~g~~yC~~cy~~--~~~~~C~~C~~~I~~~ 79 (101)
T 2cup_A 35 RCAKCLHPLANET-FVA--KDNKILCNKCTTR--EDSPKCKGCFKAIVAG 79 (101)
T ss_dssp CCSSSCCCTTSSC-CEE--ETTEEECHHHHTT--CCCCBCSSSCCBCCSS
T ss_pred cccccCCCCCcCe-eEC--cCCEEEChhHhhh--hcCCccccCCCccccC
Confidence 4566665553221 111 1455666666543 2346788888877643
No 178
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=68.47 E-value=3.9 Score=21.98 Aligned_cols=39 Identities=18% Similarity=0.405 Sum_probs=28.4
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccCC
Q 038049 79 AGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKPS 129 (141)
Q Consensus 79 ~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~ 129 (141)
..|+-|-..+. ++. +.. -+..||.+| ..|-.|+.++...
T Consensus 6 ~~C~~C~~~I~-~~~--~~a-~~~~~H~~C--------F~C~~C~~~L~~~ 44 (66)
T 1nyp_A 6 PICGACRRPIE-GRV--VNA-MGKQWHVEH--------FVCAKCEKPFLGH 44 (66)
T ss_dssp CEETTTTEECC-SCE--ECC-TTSBEETTT--------CBCTTTCCBCSSS
T ss_pred CCCcccCCEec-ceE--EEE-CccccccCc--------CEECCCCCCCCCC
Confidence 56999988887 332 332 678899988 5688898888653
No 179
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=68.45 E-value=8.9 Score=18.75 Aligned_cols=10 Identities=40% Similarity=0.567 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 038049 9 IVAAMLCALV 18 (141)
Q Consensus 9 i~~~~l~~~~ 18 (141)
+.++++..++
T Consensus 13 IAGiVvG~v~ 22 (38)
T 2k1k_A 13 IVAVIFGLLL 22 (38)
T ss_dssp HHHHHHHHHH
T ss_pred eeeeehHHHH
Confidence 3444444333
No 180
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=68.39 E-value=2.1 Score=25.88 Aligned_cols=11 Identities=27% Similarity=0.939 Sum_probs=10.3
Q ss_pred ccHhhHHHHHc
Q 038049 104 FHVACIDKWLL 114 (141)
Q Consensus 104 Fh~~Ci~~wl~ 114 (141)
||..|+..|+.
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999985
No 181
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=68.24 E-value=4.3 Score=26.49 Aligned_cols=48 Identities=19% Similarity=0.365 Sum_probs=30.4
Q ss_pred CCCccccccccccccc--CCceeecCCCCCcccHhhHHHHHcCCC--ccccccc
Q 038049 75 SSASAGCAICLLDFID--GDEIRLLPKCNHRFHVACIDKWLLSHS--SCPTCRQ 124 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~--~~~v~~lp~C~H~Fh~~Ci~~wl~~~~--~CP~CR~ 124 (141)
..++..|.+|...|.- +...... .|+|.+|..|= .|..+.. .|-+|+.
T Consensus 65 ~~~~~~C~~C~~~fg~l~~~g~~C~-~C~~~VC~~C~-~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 65 HLNETHCARCLQPYRLLLNSRRQCL-ECSLFVCKSCS-HAHPEEQGWLCDPCHL 116 (153)
T ss_dssp TGGGTBCTTTCCBGGGCSSCCEECT-TTCCEECGGGE-ECCSSSSSCEEHHHHH
T ss_pred cCCCccchhhcCccccccCCCCcCC-CCCchhhcccc-cccCCCCcEeeHHHHH
Confidence 3467899999998743 3333344 49999999996 2332222 2666654
No 182
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=68.21 E-value=2.1 Score=25.80 Aligned_cols=11 Identities=45% Similarity=1.259 Sum_probs=10.4
Q ss_pred ccHhhHHHHHc
Q 038049 104 FHVACIDKWLL 114 (141)
Q Consensus 104 Fh~~Ci~~wl~ 114 (141)
||..|+..|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 183
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=67.82 E-value=1.1 Score=33.85 Aligned_cols=50 Identities=18% Similarity=0.211 Sum_probs=0.0
Q ss_pred CcccccccccccccCCceeecCCCCCcccHhhHHHHHc-------CCCccccccccc
Q 038049 77 ASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLL-------SHSSCPTCRQRL 126 (141)
Q Consensus 77 ~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~-------~~~~CP~CR~~~ 126 (141)
+...|.+|...|..-..-.....||++||..|-..++. ....|-.|-..+
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 34679999988854321111124999999999977642 123477776544
No 184
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=66.78 E-value=4.9 Score=23.20 Aligned_cols=41 Identities=17% Similarity=0.365 Sum_probs=29.3
Q ss_pred CcccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccCC
Q 038049 77 ASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKPS 129 (141)
Q Consensus 77 ~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~ 129 (141)
....|+-|-..+. ++.+ .. -+..||.+| ..|-.|+.+|...
T Consensus 24 ~~~~C~~C~~~I~-~~~v--~a-~~~~~H~~C--------F~C~~C~~~L~~~ 64 (90)
T 2dar_A 24 RTPMCAHCNQVIR-GPFL--VA-LGKSWHPEE--------FNCAHCKNTMAYI 64 (90)
T ss_dssp CCCBBSSSCCBCC-SCEE--EE-TTEEECTTT--------CBCSSSCCBCSSS
T ss_pred CCCCCccCCCEec-ceEE--EE-CCccccccC--------CccCCCCCCCCCC
Confidence 3467999998884 3333 22 678999988 5788888887643
No 185
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=66.39 E-value=3.7 Score=30.78 Aligned_cols=49 Identities=18% Similarity=0.377 Sum_probs=30.4
Q ss_pred ccccccccccccCCceeecCCCCCc--ccHhhHHHHHcC--CCccccccccccCCC
Q 038049 79 AGCAICLLDFIDGDEIRLLPKCNHR--FHVACIDKWLLS--HSSCPTCRQRLKPSD 130 (141)
Q Consensus 79 ~~C~ICl~~~~~~~~v~~lp~C~H~--Fh~~Ci~~wl~~--~~~CP~CR~~~~~~~ 130 (141)
..|++=...+..+ ++-.. |.|. |-..=+-....+ .-.||+|.+.+...+
T Consensus 250 L~CPlS~~ri~~P--vRg~~-C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~d 302 (371)
T 3i2d_A 250 LQCPISYTRMKYP--SKSIN-CKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALEN 302 (371)
T ss_dssp SBCTTTSSBCSSE--EEETT-CCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGG
T ss_pred ecCCCcccccccc--CcCCc-CCCcceECHHHHHHHhhcCCceeCCCCCcccCHHH
Confidence 5688777766443 56665 9998 544434333322 345999998775443
No 186
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=66.34 E-value=4 Score=21.98 Aligned_cols=41 Identities=20% Similarity=0.319 Sum_probs=28.8
Q ss_pred ccccccccccccCCceeecCCCCCccc--HhhHHHHHcCCCccccccccccCC
Q 038049 79 AGCAICLLDFIDGDEIRLLPKCNHRFH--VACIDKWLLSHSSCPTCRQRLKPS 129 (141)
Q Consensus 79 ~~C~ICl~~~~~~~~v~~lp~C~H~Fh--~~Ci~~wl~~~~~CP~CR~~~~~~ 129 (141)
..|+-|-..+..++..... -|..|| .+| ..|-.|+.+|...
T Consensus 3 ~~C~~C~~~I~~~~~~v~a--~~~~wH~~~~C--------F~C~~C~~~L~~~ 45 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVTY--NNFSWHASTEC--------FLCSCCSKCLIGQ 45 (65)
T ss_dssp EECTTTSSEECTTSCEEEE--TTEEEETTTTT--------SBCTTTCCBCTTS
T ss_pred CCCcCCCCeeccCceEEEE--CCCccCCCCCC--------EECCCCCCcCCCC
Confidence 4688998888764333222 678899 888 5788888887643
No 187
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=64.87 E-value=16 Score=20.44 Aligned_cols=34 Identities=18% Similarity=0.341 Sum_probs=19.4
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 038049 3 DLNIMVIVAAMLCALVCALGLHSMLQCVFQCTQR 36 (141)
Q Consensus 3 ~~~~~~i~~~~l~~~~~~l~~~~~~~~~~~~~~~ 36 (141)
|..-.-+-+.++.++++++++++++.--.+|..+
T Consensus 12 DY~tLRiGGLifA~vLfi~GI~iilS~KckCk~~ 45 (72)
T 2jo1_A 12 DYQSLQIGGLVIAGILFILGILIVLSRRCRCKFN 45 (72)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHhhccchHHHHHHHHHHHHHHHcCccccCCC
Confidence 3344445566666666677776666554555433
No 188
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=64.81 E-value=4.1 Score=30.40 Aligned_cols=49 Identities=18% Similarity=0.328 Sum_probs=31.1
Q ss_pred ccccccccccccCCceeecCCCCCc--ccHhhHHHHHcC--CCccccccccccCCC
Q 038049 79 AGCAICLLDFIDGDEIRLLPKCNHR--FHVACIDKWLLS--HSSCPTCRQRLKPSD 130 (141)
Q Consensus 79 ~~C~ICl~~~~~~~~v~~lp~C~H~--Fh~~Ci~~wl~~--~~~CP~CR~~~~~~~ 130 (141)
..|++=...+..+ +|-.. |.|. |-..=+-....+ .-.||+|.+.+...+
T Consensus 216 L~CPlS~~ri~~P--~Rg~~-C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~d 268 (360)
T 4fo9_A 216 LMCPLGKMRLTIP--CRAVT-CTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYES 268 (360)
T ss_dssp SBCTTTCSBCSSE--EEETT-CCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGG
T ss_pred eeCCCccceeccC--CcCCC-CCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHH
Confidence 4688877666443 56665 9998 555444443333 345999999876443
No 189
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=64.77 E-value=1.3 Score=26.26 Aligned_cols=44 Identities=20% Similarity=0.444 Sum_probs=26.1
Q ss_pred CCcccccccccccccCCceeecCCCC---CcccHhhHHHHHcC----CCcccc-ccc
Q 038049 76 SASAGCAICLLDFIDGDEIRLLPKCN---HRFHVACIDKWLLS----HSSCPT-CRQ 124 (141)
Q Consensus 76 ~~~~~C~ICl~~~~~~~~v~~lp~C~---H~Fh~~Ci~~wl~~----~~~CP~-CR~ 124 (141)
.+...| ||-... .++ ...-..|. .-||..|+. |.. +-.||. |++
T Consensus 24 ~~~~yC-iC~~~~-~g~-MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 24 QEEVYC-FCRNVS-YGP-MVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CCSCCS-TTTCCC-SSS-EECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCCcEE-EeCCCC-CCC-EEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 344567 998653 233 22322344 579999997 222 335999 975
No 190
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=64.59 E-value=4.6 Score=21.89 Aligned_cols=38 Identities=26% Similarity=0.651 Sum_probs=26.4
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccC
Q 038049 79 AGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKP 128 (141)
Q Consensus 79 ~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~ 128 (141)
..|+-|-..+.. +.+.. -+..||.+| ..|-.|+.+|..
T Consensus 6 ~~C~~C~~~I~~-~~~~a---~~~~~H~~C--------F~C~~C~~~L~~ 43 (69)
T 2cur_A 6 SGCVKCNKAITS-GGITY---QDQPWHADC--------FVCVTCSKKLAG 43 (69)
T ss_dssp CCCSSSCCCCCT-TCEEE---TTEEECTTT--------TBCTTTCCBCTT
T ss_pred CCCcccCCEeCc-ceEEE---CccccccCc--------CEECCCCCCCCC
Confidence 568899888753 33322 567899888 467888887753
No 191
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=64.20 E-value=0.68 Score=25.31 Aligned_cols=36 Identities=17% Similarity=0.512 Sum_probs=24.2
Q ss_pred ccccccccccccCCceeecC--C--CCCcccHhhHHHHHc
Q 038049 79 AGCAICLLDFIDGDEIRLLP--K--CNHRFHVACIDKWLL 114 (141)
Q Consensus 79 ~~C~ICl~~~~~~~~v~~lp--~--C~H~Fh~~Ci~~wl~ 114 (141)
..|+-|...++..+...... . |++.|+..|...|-.
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~ 46 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP 46 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCccc
Confidence 56888887776665432222 2 778888888888754
No 192
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=63.77 E-value=0.98 Score=21.75 Aligned_cols=14 Identities=21% Similarity=0.453 Sum_probs=9.7
Q ss_pred ccccccccccccCC
Q 038049 79 AGCAICLLDFIDGD 92 (141)
Q Consensus 79 ~~C~ICl~~~~~~~ 92 (141)
-.||+||.++...+
T Consensus 6 FiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 6 FICPQCMKSLGSAD 19 (34)
T ss_dssp EECTTTCCEESSHH
T ss_pred cCCcHHHHHcCCHH
Confidence 56888887776543
No 193
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=63.53 E-value=7.6 Score=24.06 Aligned_cols=39 Identities=23% Similarity=0.443 Sum_probs=29.5
Q ss_pred cccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCcccccccccc
Q 038049 78 SAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLK 127 (141)
Q Consensus 78 ~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~ 127 (141)
...|+-|-..+.....+.. -+..||.+| ..|-.|+.+|.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYA---MDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEE---TTEEEETTT--------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEe---CCcEEcccc--------cCcCcCCCccc
Confidence 4579999988875432332 678899998 67889999886
No 194
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=62.96 E-value=5.8 Score=22.30 Aligned_cols=38 Identities=24% Similarity=0.589 Sum_probs=25.6
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccC
Q 038049 79 AGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKP 128 (141)
Q Consensus 79 ~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~ 128 (141)
..|+-|-..+. ++.+. .-+..||.+| ..|-.|+++|..
T Consensus 16 ~~C~~C~~~I~-~~~v~---a~~~~wH~~C--------F~C~~C~~~L~~ 53 (81)
T 1v6g_A 16 TRCFSCDQFIE-GEVVS---ALGKTYHPDC--------FVCAVCRLPFPP 53 (81)
T ss_dssp CBCTTTCCBCC-SCCEE---ETTEEECTTT--------SSCSSSCCCCCS
T ss_pred CcCccccCEec-cceEE---ECCceeCccC--------CccccCCCCCCC
Confidence 46999988876 33332 2678899988 456667666654
No 195
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=62.74 E-value=4.3 Score=26.52 Aligned_cols=39 Identities=26% Similarity=0.688 Sum_probs=23.1
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCcccccccccc
Q 038049 79 AGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLK 127 (141)
Q Consensus 79 ~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~ 127 (141)
..|..|-..+...+.+... -++.||.+|+ .|-.|...+.
T Consensus 66 ~~C~~C~~~I~~~~~v~~a--~~~~~H~~CF--------~C~~C~~~L~ 104 (169)
T 2rgt_A 66 TKCAACQLGIPPTQVVRRA--QDFVYHLHCF--------ACVVCKRQLA 104 (169)
T ss_dssp CBCTTTCCBCCTTSEEEEE--TTEEEEGGGC--------BCTTTCCBCC
T ss_pred ccccccccccCCCcEEEEc--CCceEeeCCC--------cCCCCCCCCC
Confidence 3566666665544433222 5667777773 6777777665
No 196
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=61.88 E-value=3 Score=25.07 Aligned_cols=40 Identities=23% Similarity=0.468 Sum_probs=23.7
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCcccccccccc
Q 038049 79 AGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLK 127 (141)
Q Consensus 79 ~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~ 127 (141)
..|+.|..+++.... +.++..|=.. +.....||-|.+++.
T Consensus 33 ~~CP~Cq~eL~~~g~--------~~hC~~C~~~-f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQDNG--------HARCRSCGEF-IEMKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEEETT--------EEEETTTCCE-EEEEEECTTTCSBCE
T ss_pred ccCccCCCcceecCC--------EEECccccch-hhccccCcchhhHHH
Confidence 679999887754322 2234444222 234566999988764
No 197
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=61.55 E-value=1.2 Score=23.32 Aligned_cols=42 Identities=21% Similarity=0.517 Sum_probs=25.0
Q ss_pred ccccccccCCceeecCCCCCcccHhhHHHHHc---CCCcccccccc
Q 038049 83 ICLLDFIDGDEIRLLPKCNHRFHVACIDKWLL---SHSSCPTCRQR 125 (141)
Q Consensus 83 ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~---~~~~CP~CR~~ 125 (141)
||......+..|. -..|+.=||..|+..--. ..-.||.|+.+
T Consensus 8 ~C~~~~~~~~MI~-Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~S 52 (52)
T 3o7a_A 8 FCMKPFAGRPMIE-CNECHTWIHLSCAKIRKSNVPEVFVCQKCRDS 52 (52)
T ss_dssp TTCCBCTTCCEEE-CTTTCCEEETTTTTCCGGGCCSSCCCHHHHTC
T ss_pred EeCCcCCCCCEEE-cCCCCccccccccCCCcccCCCcEECcCCCCc
Confidence 6766544223333 334888899999864221 23459999764
No 198
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=61.47 E-value=7.8 Score=29.21 Aligned_cols=37 Identities=19% Similarity=0.553 Sum_probs=25.8
Q ss_pred CCCcccccccccccccCCceeecC--CCCCcccHhhHHHHHcC
Q 038049 75 SSASAGCAICLLDFIDGDEIRLLP--KCNHRFHVACIDKWLLS 115 (141)
Q Consensus 75 ~~~~~~C~ICl~~~~~~~~v~~lp--~C~H~Fh~~Ci~~wl~~ 115 (141)
.+.+..|.+|-+ +..+.... .|...||.+||...+-.
T Consensus 90 DG~~~yCr~C~~----Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~ 128 (386)
T 2pv0_B 90 DGYQSYCSICCS----GETLLICGNPDCTRCYCFECVDSLVGP 128 (386)
T ss_dssp SSSBCSCTTTCC----CSSCEECCSTTCCCEECHHHHHHHTCT
T ss_pred CCCcccceEcCC----CCeEEEeCCCCCCcchHHHHHHHhcCh
Confidence 344677999874 33344433 59999999999999843
No 199
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.01 E-value=8.6 Score=21.20 Aligned_cols=37 Identities=24% Similarity=0.574 Sum_probs=23.7
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCcccccccccc
Q 038049 79 AGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLK 127 (141)
Q Consensus 79 ~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~ 127 (141)
..|+-|-..+.. +. +. .-+..||.+| ..|-.|..+|.
T Consensus 6 ~~C~~C~~~I~~-~~--v~-a~~~~wH~~C--------F~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITG-RV--LE-AGEKHYHPSC--------ALCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSS-CC--BC-CSSCCBCTTT--------SCCSSSCCCCC
T ss_pred CCcccCCCEecC-ee--EE-eCCCCCCCCc--------CEeCCCCCCCC
Confidence 468888877754 22 22 2677888888 45666666665
No 200
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=59.54 E-value=7.8 Score=21.70 Aligned_cols=38 Identities=21% Similarity=0.548 Sum_probs=27.0
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccC
Q 038049 79 AGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKP 128 (141)
Q Consensus 79 ~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~ 128 (141)
..|+-|-..+. +.. +. .-+..||.+| ..|-.|+.+|..
T Consensus 16 ~~C~~C~~~I~-~~~--~~-a~~~~~H~~C--------F~C~~C~~~L~~ 53 (81)
T 1x6a_A 16 EFCHGCSLLMT-GPF--MV-AGEFKYHPEC--------FACMSCKVIIED 53 (81)
T ss_dssp CBCTTTCCBCC-SCC--BC-CTTCCBCTTS--------CBCTTTCCBCCT
T ss_pred CcCccCCCCcC-ceE--EE-ECCceecccc--------CCccCCCCccCC
Confidence 46999988877 322 22 2678899888 568888888864
No 201
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=58.41 E-value=7.5 Score=25.83 Aligned_cols=38 Identities=26% Similarity=0.640 Sum_probs=23.4
Q ss_pred cccccccccccCCceeecCCCCCcccHhhHHHHHcCCCcccccccccc
Q 038049 80 GCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLK 127 (141)
Q Consensus 80 ~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~ 127 (141)
.|..|-..+...+.+... -++.||.+| ..|-.|.+++.
T Consensus 71 ~C~~C~~~I~~~e~~i~a--~~~~~H~~C--------F~C~~C~~~L~ 108 (188)
T 1rut_X 71 ACSACGQSIPASELVMRA--QGNVYHLKC--------FTCSTCRNRLV 108 (188)
T ss_dssp ECTTTCCEECTTSEEEEE--TTEEECGGG--------CBCTTTCCBCC
T ss_pred ccccCCCccccCcEEEEc--CCCEEeCCC--------CeECCCCCCCC
Confidence 588887776654443322 577788887 35556655553
No 202
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.36 E-value=7.9 Score=21.56 Aligned_cols=38 Identities=24% Similarity=0.566 Sum_probs=27.2
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccC
Q 038049 79 AGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKP 128 (141)
Q Consensus 79 ~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~ 128 (141)
..|+-|-..+... . +.. -+..||.+| ..|-.|+.+|..
T Consensus 16 ~~C~~C~~~I~~~-~--v~a-~~~~~H~~C--------F~C~~C~~~L~~ 53 (80)
T 2cuq_A 16 PRCARCSKTLTQG-G--VTY-RDQPWHREC--------LVCTGCQTPLAG 53 (80)
T ss_dssp CCCTTTCCCCCSC-C--EES-SSSEECTTT--------CBCSSSCCBCTT
T ss_pred CcCCCCCCEecCc-E--EEE-CCchhhhhh--------CCcccCCCcCCC
Confidence 5699998887543 2 333 678899988 568888888753
No 203
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=58.11 E-value=0.88 Score=28.06 Aligned_cols=44 Identities=18% Similarity=0.145 Sum_probs=25.8
Q ss_pred ccccccccccCCceeecCCCCCcccHhhHHHHHc----C----CCccccccc
Q 038049 81 CAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLL----S----HSSCPTCRQ 124 (141)
Q Consensus 81 C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~----~----~~~CP~CR~ 124 (141)
|..|......+..+.....|...||..|...... . .-.||.|+.
T Consensus 62 c~~c~~~~~~~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~ 113 (117)
T 4bbq_A 62 VDQNEETQDFEKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQ 113 (117)
T ss_dssp BCCHHHHCCGGGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC-
T ss_pred ccccccccccCcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcC
Confidence 4444444333444555556999999999875321 1 123999975
No 204
>1wvk_A AT2G23090/F21P24.15; structural genomics, protein structure initiative, cell free, center for eukaryotic structural genomics, CESG; NMR {Arabidopsis thaliana} SCOP: g.82.1.1
Probab=57.91 E-value=2.1 Score=25.18 Aligned_cols=14 Identities=29% Similarity=0.828 Sum_probs=9.8
Q ss_pred CCCccccccccccc
Q 038049 75 SSASAGCAICLLDF 88 (141)
Q Consensus 75 ~~~~~~C~ICl~~~ 88 (141)
......|.||+..|
T Consensus 42 ~A~~i~C~VCr~tF 55 (86)
T 1wvk_A 42 KAMSIQCKVCMQTF 55 (86)
T ss_dssp TTCCEEETTTTEEE
T ss_pred HhhCCCChHhHhhH
Confidence 44456788888766
No 205
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=56.34 E-value=0.72 Score=26.66 Aligned_cols=14 Identities=21% Similarity=0.705 Sum_probs=12.9
Q ss_pred CCCCcccHhhHHHH
Q 038049 99 KCNHRFHVACIDKW 112 (141)
Q Consensus 99 ~C~H~Fh~~Ci~~w 112 (141)
.|||.|+..|-..|
T Consensus 55 ~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 55 GCGFAFCRECKEAY 68 (80)
T ss_dssp CCSCCEETTTTEEC
T ss_pred CCCCeeccccCccc
Confidence 59999999999988
No 206
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=54.39 E-value=8.9 Score=25.51 Aligned_cols=40 Identities=23% Similarity=0.592 Sum_probs=28.4
Q ss_pred cccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccC
Q 038049 78 SAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKP 128 (141)
Q Consensus 78 ~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~ 128 (141)
...|+-|-..+.+.+.+.. -+..||.+| ..|-.|+.+|..
T Consensus 115 ~~~C~~C~~~I~~~~~v~a---~~~~~H~~C--------F~C~~C~~~L~~ 154 (192)
T 1b8t_A 115 SDGCPRCGQAVYAAEKVIG---AGKSWHKSC--------FRCAKCGKSLES 154 (192)
T ss_dssp CEECTTTSCEECSSSCEEE---TTEEECTTT--------CBCTTTCCBCCS
T ss_pred CCcCCCCCCEecCcEEEec---CCCccchhc--------CCccccCCCCCC
Confidence 4569999988876665542 567888887 567777777654
No 207
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.70 E-value=7.2 Score=21.75 Aligned_cols=39 Identities=15% Similarity=0.462 Sum_probs=28.2
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccCC
Q 038049 79 AGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKPS 129 (141)
Q Consensus 79 ~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~ 129 (141)
..|+-|-..+.+ +.+.. -+..||.+| ..|-.|+.+|...
T Consensus 16 ~~C~~C~~~I~~-~~v~a---~~~~~H~~C--------F~C~~C~~~L~~~ 54 (80)
T 1x3h_A 16 PKCGGCNRPVLE-NYLSA---MDTVWHPEC--------FVCGDCFTSFSTG 54 (80)
T ss_dssp CBCTTTCCBCCS-SCEEE---TTEEECTTT--------CBCSSSCCBSCSS
T ss_pred CccccCCCeecc-eeEEE---CCCeEecCc--------CChhhCCCCCCCC
Confidence 569999888765 33322 577899988 5688888888654
No 208
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=53.61 E-value=5.3 Score=26.39 Aligned_cols=44 Identities=14% Similarity=0.299 Sum_probs=21.0
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccC
Q 038049 79 AGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKP 128 (141)
Q Consensus 79 ~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~ 128 (141)
-.|..|-..+.... ... =|..||..|...- -...|..|...+..
T Consensus 88 F~C~~C~~~L~~~~---f~~-~g~~yC~~~y~~~--f~~kC~~C~~~I~~ 131 (182)
T 2jtn_A 88 LKCSDCHVPLAERC---FSR-GESVYCKDDFFKR--FGTKCAACQLGIPP 131 (182)
T ss_dssp TSCTTTCCCCSSCC---EEE-TTEEECHHHHHHT--TSCCCTTTCCCCCS
T ss_pred CccCCCCCccCCCc---eeE-CCEeeecCccccc--cccccccCCCccCC
Confidence 34666665554332 111 3455655555441 23455566555543
No 209
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=53.38 E-value=3.4 Score=26.98 Aligned_cols=24 Identities=25% Similarity=0.704 Sum_probs=16.6
Q ss_pred CCCCCcccHhhHHHHHcCCCcccccccccc
Q 038049 98 PKCNHRFHVACIDKWLLSHSSCPTCRQRLK 127 (141)
Q Consensus 98 p~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~ 127 (141)
+.|||.|-.. .....||.|..++.
T Consensus 136 ~~Cg~~~~~~------~~~~~Cp~CG~~~~ 159 (165)
T 2lcq_A 136 IGCGRKFSTL------PPGGVCPDCGSKVK 159 (165)
T ss_dssp SSSCCEESSC------CGGGBCTTTCCBEE
T ss_pred CCCCCcccCC------CCCCcCCCCCCcce
Confidence 3599988653 22357999988763
No 210
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=53.05 E-value=18 Score=17.09 Aligned_cols=25 Identities=12% Similarity=0.060 Sum_probs=13.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Q 038049 5 NIMVIVAAMLCALVCALGLHSMLQC 29 (141)
Q Consensus 5 ~~~~i~~~~l~~~~~~l~~~~~~~~ 29 (141)
+...+.++++.-++..+++....++
T Consensus 5 ~~gaIaGIVvgdi~~t~~i~~~vy~ 29 (33)
T 2l34_A 5 SPGVLAGIVVGDLVLTVLIALAVYF 29 (33)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcceEEeEeHHHHHHHHHHHHHHhh
Confidence 4455566666665555554444443
No 211
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=53.00 E-value=21 Score=17.89 Aligned_cols=18 Identities=17% Similarity=0.161 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 038049 11 AAMLCALVCALGLHSMLQ 28 (141)
Q Consensus 11 ~~~l~~~~~~l~~~~~~~ 28 (141)
+++..++++.+.++.++.
T Consensus 15 gvi~~ivliGl~lLliwk 32 (43)
T 2k9j_B 15 SVMGAILLIGLAALLIWK 32 (43)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 212
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=52.94 E-value=6.1 Score=22.89 Aligned_cols=11 Identities=18% Similarity=0.612 Sum_probs=5.7
Q ss_pred ccccccccccc
Q 038049 80 GCAICLLDFID 90 (141)
Q Consensus 80 ~C~ICl~~~~~ 90 (141)
.|+.|..++..
T Consensus 4 ~CP~C~~~l~~ 14 (81)
T 2jrp_A 4 TCPVCHHALER 14 (81)
T ss_dssp CCSSSCSCCEE
T ss_pred CCCCCCCcccc
Confidence 45555555443
No 213
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.75 E-value=7.7 Score=21.75 Aligned_cols=40 Identities=23% Similarity=0.555 Sum_probs=28.3
Q ss_pred cccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccCC
Q 038049 78 SAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKPS 129 (141)
Q Consensus 78 ~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~ 129 (141)
...|+-|-..+.+ ..+ .. -+..||.+| ..|..|+.+|...
T Consensus 15 ~~~C~~C~~~I~~-~~~--~a-~~~~~H~~C--------F~C~~C~~~L~~~ 54 (81)
T 2dlo_A 15 LEKCATCSQPILD-RIL--RA-MGKAYHPGC--------FTCVVCHRGLDGI 54 (81)
T ss_dssp CCBCTTTCCBCCS-CCE--EE-TTEEECTTT--------CBCSSSCCBCTTS
T ss_pred CCccccCCCeecc-eeE--EE-CCccccHHh--------cCcccCCCccCCC
Confidence 3679999888763 222 22 678899988 5688898888643
No 214
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=52.73 E-value=8.1 Score=21.86 Aligned_cols=23 Identities=22% Similarity=0.600 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 038049 6 IMVIVAAMLCALVCALGLHSMLQ 28 (141)
Q Consensus 6 ~~~i~~~~l~~~~~~l~~~~~~~ 28 (141)
-.-+-+.++.++++++++++++.
T Consensus 18 tLRigGLifA~vLfi~GI~iilS 40 (74)
T 2zxe_G 18 RLRVVGLIVAAVLCVIGIIILLA 40 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HheeccchhHHHHHHHHHHHHHc
Confidence 33444555555566666655553
No 215
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=51.96 E-value=13 Score=22.79 Aligned_cols=37 Identities=19% Similarity=0.490 Sum_probs=17.6
Q ss_pred cccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccc
Q 038049 80 GCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRL 126 (141)
Q Consensus 80 ~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~ 126 (141)
.|..|-..+...+.+... -+..||.+| ..|-.|.+++
T Consensus 68 ~C~~C~~~I~~~e~~~~a--~~~~~H~~C--------F~C~~C~~~L 104 (131)
T 2xjy_A 68 LCASCDKRIRAYEMTMRV--KDKVYHLEC--------FKCAACQKHF 104 (131)
T ss_dssp ECTTTCCEECTTSEEEEE--TTEEEEGGG--------CBCTTTCCBC
T ss_pred ChhhcCCccCccceeEee--CCceECccC--------cccCCCCCCC
Confidence 455555554433322221 445555555 3455555555
No 216
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=50.25 E-value=11 Score=23.11 Aligned_cols=48 Identities=8% Similarity=-0.029 Sum_probs=31.3
Q ss_pred cccccccccccC-CceeecCCCCCcccHhhHHHHHcCCCccccccccccCC
Q 038049 80 GCAICLLDFIDG-DEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKPS 129 (141)
Q Consensus 80 ~C~ICl~~~~~~-~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~ 129 (141)
.|..|-..+.+. ... .. .=|..||..|...-+..+..|-.|..++...
T Consensus 34 ~C~~C~~~L~~~~~~~-~~-~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~ 82 (122)
T 1m3v_A 34 KCSSCQAQLGDIGTSS-YT-KSGMILCRNDYIRLFGNSGAGGSGGHMGSGG 82 (122)
T ss_dssp CCSSSCCCTTTSEECC-EE-ETTEEECHHHHHHHHCCCCSSSCSSCCSCCE
T ss_pred CcCCCCCcccccCCeE-EE-ECCeeecHHHHHHHcCCCCccccCCCCcCch
Confidence 577777666421 111 22 2567788888888766555899998888754
No 217
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=49.88 E-value=11 Score=22.84 Aligned_cols=10 Identities=20% Similarity=0.448 Sum_probs=4.5
Q ss_pred cccccccccc
Q 038049 80 GCAICLLDFI 89 (141)
Q Consensus 80 ~C~ICl~~~~ 89 (141)
.|+-|-..+.
T Consensus 5 ~C~~C~~~I~ 14 (114)
T 1j2o_A 5 TCGGCQQNIG 14 (114)
T ss_dssp CBSSSCSCBC
T ss_pred CCcCCCCeeC
Confidence 3444444443
No 218
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=47.09 E-value=12 Score=22.79 Aligned_cols=27 Identities=19% Similarity=0.266 Sum_probs=11.9
Q ss_pred cccccccccccCCceeecCCCCCccc--Hhh
Q 038049 80 GCAICLLDFIDGDEIRLLPKCNHRFH--VAC 108 (141)
Q Consensus 80 ~C~ICl~~~~~~~~v~~lp~C~H~Fh--~~C 108 (141)
.|+.|-..+..++.+... -++.|| .+|
T Consensus 65 ~C~~C~~~I~~~~~~~~a--~~~~~H~~~~C 93 (126)
T 2xqn_T 65 VCQGCHNAIDPEVQRVTY--NNFSWHASTEC 93 (126)
T ss_dssp BCTTTCSBCCTTSCEEEE--TTEEEESSTTT
T ss_pred cCcccCCcCCcCceEEEC--CCCEeeCCCCC
Confidence 455555554433322221 445555 544
No 219
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=46.35 E-value=5 Score=31.22 Aligned_cols=49 Identities=18% Similarity=0.379 Sum_probs=30.8
Q ss_pred CCcccccccccccccCCceeecCCCCCcccHhhHHHHHc-----CCCcccccccc
Q 038049 76 SASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLL-----SHSSCPTCRQR 125 (141)
Q Consensus 76 ~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~-----~~~~CP~CR~~ 125 (141)
.+...| +|...+.++........|.-=||..|+.---. .+-.||.|+..
T Consensus 35 ~~~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 35 PPPVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp CCCEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred CCCeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 334556 99887654444334445887899999964221 12459999864
No 220
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=45.14 E-value=1.8 Score=25.22 Aligned_cols=28 Identities=29% Similarity=0.692 Sum_probs=18.2
Q ss_pred eecCCCCCcccHhhHHHHHcC--CCccccc
Q 038049 95 RLLPKCNHRFHVACIDKWLLS--HSSCPTC 122 (141)
Q Consensus 95 ~~lp~C~H~Fh~~Ci~~wl~~--~~~CP~C 122 (141)
..-|.|++.||..|-..|=.. ..+|..-
T Consensus 44 v~C~~C~~~FC~~C~~~w~~~H~~~sC~~~ 73 (86)
T 2ct7_A 44 ATCPQCHQTFCVRCKRQWEEQHRGRSCEDF 73 (86)
T ss_dssp EECTTTCCEECSSSCSBCCTTTTTSCHHHH
T ss_pred eEeCCCCCccccccCCchhhcCCCCChHHH
Confidence 344469999999998887222 2346543
No 221
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=44.66 E-value=9.4 Score=20.34 Aligned_cols=12 Identities=17% Similarity=0.556 Sum_probs=8.6
Q ss_pred cccccccccccc
Q 038049 79 AGCAICLLDFID 90 (141)
Q Consensus 79 ~~C~ICl~~~~~ 90 (141)
-.|+.|..++..
T Consensus 11 L~CP~c~~~L~~ 22 (56)
T 2kpi_A 11 LACPACHAPLEE 22 (56)
T ss_dssp CCCSSSCSCEEE
T ss_pred eeCCCCCCccee
Confidence 569999876543
No 222
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=41.82 E-value=32 Score=16.86 Aligned_cols=13 Identities=8% Similarity=0.217 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 038049 20 ALGLHSMLQCVFQ 32 (141)
Q Consensus 20 ~l~~~~~~~~~~~ 32 (141)
+++..+++.+..+
T Consensus 23 iIG~IllI~y~I~ 35 (40)
T 1afo_A 23 VIGTILLISYGIR 35 (40)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444444
No 223
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=39.72 E-value=5.2 Score=22.39 Aligned_cols=15 Identities=47% Similarity=0.961 Sum_probs=7.5
Q ss_pred HcCCCcccccccccc
Q 038049 113 LLSHSSCPTCRQRLK 127 (141)
Q Consensus 113 l~~~~~CP~CR~~~~ 127 (141)
+..--.||.|+.++.
T Consensus 5 LLeiL~CP~ck~~L~ 19 (69)
T 2pk7_A 5 LLDILACPICKGPLK 19 (69)
T ss_dssp GGGTCCCTTTCCCCE
T ss_pred HHhheeCCCCCCcCe
Confidence 333344666665554
No 224
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=37.30 E-value=5.2 Score=22.30 Aligned_cols=16 Identities=31% Similarity=0.542 Sum_probs=8.5
Q ss_pred HHcCCCcccccccccc
Q 038049 112 WLLSHSSCPTCRQRLK 127 (141)
Q Consensus 112 wl~~~~~CP~CR~~~~ 127 (141)
|+..--.||.|+.++.
T Consensus 6 ~LLeiL~CP~ck~~L~ 21 (67)
T 2jny_A 6 QLLEVLACPKDKGPLR 21 (67)
T ss_dssp GGTCCCBCTTTCCBCE
T ss_pred HHHHHhCCCCCCCcCe
Confidence 3444445666666553
No 225
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=34.97 E-value=9.9 Score=22.93 Aligned_cols=12 Identities=33% Similarity=1.019 Sum_probs=6.9
Q ss_pred CCcccccccccc
Q 038049 116 HSSCPTCRQRLK 127 (141)
Q Consensus 116 ~~~CP~CR~~~~ 127 (141)
+..||+|.+++.
T Consensus 47 g~~CPvCgs~l~ 58 (112)
T 1l8d_A 47 KGKCPVCGRELT 58 (112)
T ss_dssp SEECTTTCCEEC
T ss_pred CCCCCCCCCcCC
Confidence 345666666554
No 226
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=33.69 E-value=8.2 Score=29.69 Aligned_cols=49 Identities=18% Similarity=0.310 Sum_probs=30.5
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHHHc-----CCCcccccccccc
Q 038049 79 AGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLL-----SHSSCPTCRQRLK 127 (141)
Q Consensus 79 ~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~-----~~~~CP~CR~~~~ 127 (141)
....+|...+.++........|.-=||..|+.---. .+-.||.|+....
T Consensus 5 ~~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~~ 58 (447)
T 3kv4_A 5 PVYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHG 58 (447)
T ss_dssp CEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHHC
T ss_pred CeEEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCccccC
Confidence 345589877653443334335887899999953111 2346999987543
No 227
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.68 E-value=22 Score=19.66 Aligned_cols=45 Identities=22% Similarity=0.440 Sum_probs=25.1
Q ss_pred ccccccccccccCCceeecCCCC---CcccHhhHHHHHc--CCCccccccccc
Q 038049 79 AGCAICLLDFIDGDEIRLLPKCN---HRFHVACIDKWLL--SHSSCPTCRQRL 126 (141)
Q Consensus 79 ~~C~ICl~~~~~~~~v~~lp~C~---H~Fh~~Ci~~wl~--~~~~CP~CR~~~ 126 (141)
..| +|-... .++.| .-..|. .-||.+|+..--. .+-.||.|+...
T Consensus 7 ~yC-~C~~~~-~g~MI-~CD~cdC~~~WfH~~Cvgl~~~p~~~w~Cp~C~~~~ 56 (70)
T 1x4i_A 7 GYC-ICNQVS-YGEMV-GCDNQDCPIEWFHYGCVGLTEAPKGKWYCPQCTAAM 56 (70)
T ss_dssp CCS-TTSCCC-CSSEE-CCSCTTCSCCCEEHHHHTCSSCCSSCCCCHHHHHHH
T ss_pred eEE-EcCCCC-CCCEe-EeCCCCCCccCCcccccccCcCCCCCEECCCCCccc
Confidence 445 587652 33323 222343 5699999983111 123499998755
No 228
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=32.54 E-value=11 Score=16.69 Aligned_cols=10 Identities=40% Similarity=1.182 Sum_probs=6.3
Q ss_pred cccccccccc
Q 038049 118 SCPTCRQRLK 127 (141)
Q Consensus 118 ~CP~CR~~~~ 127 (141)
.||+|.+.++
T Consensus 8 qcpvcqq~mp 17 (29)
T 3vhs_A 8 QCPVCQQMMP 17 (29)
T ss_dssp ECTTTCCEEE
T ss_pred eChHHHHhCc
Confidence 4777766544
No 229
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=31.36 E-value=3.2 Score=30.30 Aligned_cols=48 Identities=19% Similarity=0.371 Sum_probs=29.1
Q ss_pred CCcccccccccccccCCceee--cCCCC--CcccHhhHHHHHcCCCcccccccc
Q 038049 76 SASAGCAICLLDFIDGDEIRL--LPKCN--HRFHVACIDKWLLSHSSCPTCRQR 125 (141)
Q Consensus 76 ~~~~~C~ICl~~~~~~~~v~~--lp~C~--H~Fh~~Ci~~wl~~~~~CP~CR~~ 125 (141)
.....|++|-+.-... .++. .. =| +.+|.-|=.+|-.....||.|-..
T Consensus 180 ~~~~~CPvCGs~P~~s-~l~~~g~~-~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAG-MIRQGGKE-TGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEE-EEEC-----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCcee-EEeecCCC-CCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 4457899998654322 1110 01 22 456666777776677889999875
No 230
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=30.94 E-value=25 Score=23.11 Aligned_cols=20 Identities=20% Similarity=0.404 Sum_probs=11.7
Q ss_pred CCCCcccHhhHHHHHcCCCcccccccc
Q 038049 99 KCNHRFHVACIDKWLLSHSSCPTCRQR 125 (141)
Q Consensus 99 ~C~H~Fh~~Ci~~wl~~~~~CP~CR~~ 125 (141)
.|||++-. .--..||+|..+
T Consensus 143 ~CG~i~~~-------~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 143 ICGYTAVD-------EAPEYCPVCGAP 162 (170)
T ss_dssp TTCCEEES-------CCCSBCTTTCCB
T ss_pred CCCCeeCC-------CCCCCCCCCCCC
Confidence 47776541 122479999764
No 231
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=29.91 E-value=76 Score=17.68 Aligned_cols=35 Identities=14% Similarity=0.359 Sum_probs=24.3
Q ss_pred CCcccccccccccccCCceeecCCCCCcccHhhHHH
Q 038049 76 SASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDK 111 (141)
Q Consensus 76 ~~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~ 111 (141)
..+..|-.|-+.-.....-..+. |.-.|+..|+..
T Consensus 28 ~~~v~C~~C~~~~~~~A~ksCl~-C~~s~C~~hl~~ 62 (78)
T 2ffw_A 28 AEKVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKA 62 (78)
T ss_dssp SCCCBCSSCCSSSCCBCCEEETT-TTEEECHHHHHH
T ss_pred CCCccCCcCCCCCCCCCeeEccC-ccchhhhhhhHh
Confidence 34577999986421233445565 999999999986
No 232
>2roo_A Neurotoxin MAGI-4; spider, sodium channel inhibitor, cleavage on PAIR of basic residues, ionic channel inhibitor, knottin, secreted; NMR {Synthetic}
Probab=29.75 E-value=1.9 Score=21.40 Aligned_cols=16 Identities=31% Similarity=0.787 Sum_probs=12.5
Q ss_pred HhhHHHHHcCCCcccc
Q 038049 106 VACIDKWLLSHSSCPT 121 (141)
Q Consensus 106 ~~Ci~~wl~~~~~CP~ 121 (141)
..||..|.+.+.+|-.
T Consensus 18 mkCiyAWYnqq~sCq~ 33 (43)
T 2roo_A 18 YNCVYAWYNQQSSCER 33 (43)
T ss_dssp CEEEECGGGSSEEEEC
T ss_pred HHHHHHHHccCCchhh
Confidence 4688899998888743
No 233
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.77 E-value=29 Score=19.75 Aligned_cols=35 Identities=20% Similarity=0.306 Sum_probs=21.1
Q ss_pred CCCCcccccccccccccC-CceeecCCCCCcccHhh
Q 038049 74 PSSASAGCAICLLDFIDG-DEIRLLPKCNHRFHVAC 108 (141)
Q Consensus 74 ~~~~~~~C~ICl~~~~~~-~~v~~lp~C~H~Fh~~C 108 (141)
..+++..|+.|.+.|.-- +.-..-+.|.|.-+.+|
T Consensus 21 ~~~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~C 56 (76)
T 2csz_A 21 QHYSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDC 56 (76)
T ss_dssp TTCCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTS
T ss_pred cCCCccchhhhCccccccccCCCcCcccChhhcccc
Confidence 356778999999887421 11112224777666666
No 234
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1
Probab=28.00 E-value=69 Score=18.42 Aligned_cols=40 Identities=25% Similarity=0.493 Sum_probs=28.6
Q ss_pred cccccccccccccC---CceeecCCCCCcccHhhHHHHHcCCCcccc
Q 038049 78 SAGCAICLLDFIDG---DEIRLLPKCNHRFHVACIDKWLLSHSSCPT 121 (141)
Q Consensus 78 ~~~C~ICl~~~~~~---~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~ 121 (141)
...|.+|-+..... +..+-.- |+=..|.+|.... ...|++
T Consensus 38 ~s~C~vC~k~c~s~~~L~g~rC~W-Cq~~VH~~C~~~~---~~eC~l 80 (84)
T 1r79_A 38 SAKCTVCDKTCGSVLRLQDWRCLW-CKAMVHTSCKESL---LTKCSG 80 (84)
T ss_dssp TCBCSSSCCBCCCTTTCCCEEESS-SCCEECHHHHHHC---CSCBCC
T ss_pred CCEeCCCCCEeCCccCCCCCCCcc-cChhHHHHHHHhc---cCcCCC
Confidence 36799998764322 3456777 9999999998885 455664
No 235
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=27.91 E-value=1.2e+02 Score=19.15 Aligned_cols=12 Identities=8% Similarity=0.265 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 038049 6 IMVIVAAMLCAL 17 (141)
Q Consensus 6 ~~~i~~~~l~~~ 17 (141)
+++++++.++.+
T Consensus 54 lYIL~vmgffgf 65 (138)
T 2k21_A 54 LYVLMVLGFFGF 65 (138)
T ss_dssp CHHHHHHHHHHH
T ss_pred ehHHHHHHHHHH
Confidence 334333333333
No 236
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=27.49 E-value=5.3 Score=22.28 Aligned_cols=9 Identities=44% Similarity=1.036 Sum_probs=4.2
Q ss_pred ccccccccc
Q 038049 118 SCPTCRQRL 126 (141)
Q Consensus 118 ~CP~CR~~~ 126 (141)
.||.|+.++
T Consensus 10 ~CP~ck~~L 18 (68)
T 2jr6_A 10 VCPVTKGRL 18 (68)
T ss_dssp BCSSSCCBC
T ss_pred ECCCCCCcC
Confidence 355554444
No 237
>1qdp_A Robustoxin; neurotoxin, cystine knot, inhibitor cystine knot motif, sodium channel modulator, funnel WEB spider, venom; NMR {Atrax robustus} SCOP: g.3.6.2 PDB: 1vtx_A
Probab=27.14 E-value=1.9 Score=21.25 Aligned_cols=15 Identities=33% Similarity=0.888 Sum_probs=11.8
Q ss_pred HhhHHHHHcCCCccc
Q 038049 106 VACIDKWLLSHSSCP 120 (141)
Q Consensus 106 ~~Ci~~wl~~~~~CP 120 (141)
..||..|.+.+.+|-
T Consensus 18 mkCiyAWYnqq~sCq 32 (42)
T 1qdp_A 18 MKCIYAWYNQQGSCQ 32 (42)
T ss_dssp CEEECCSSCSCCEEE
T ss_pred HHHHHHHHccCCchH
Confidence 468888988888874
No 238
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=26.55 E-value=38 Score=22.86 Aligned_cols=20 Identities=20% Similarity=0.526 Sum_probs=12.2
Q ss_pred CCCCcccHhhHHHHHcCCCcccccccc
Q 038049 99 KCNHRFHVACIDKWLLSHSSCPTCRQR 125 (141)
Q Consensus 99 ~C~H~Fh~~Ci~~wl~~~~~CP~CR~~ 125 (141)
.|||++- . ..-..||+|..+
T Consensus 176 ~CG~i~~-g------~~p~~CP~C~~~ 195 (202)
T 1yuz_A 176 ICGYIHK-G------EDFEKCPICFRP 195 (202)
T ss_dssp SSCCEEE-S------SCCSBCTTTCCB
T ss_pred CCCCEEc-C------cCCCCCCCCCCC
Confidence 4777743 2 122579999764
No 239
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=26.08 E-value=94 Score=22.73 Aligned_cols=42 Identities=12% Similarity=0.161 Sum_probs=30.4
Q ss_pred cccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCcccccccc
Q 038049 78 SAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQR 125 (141)
Q Consensus 78 ~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~ 125 (141)
-.-|+.=+.++..+......|-||-.||.+. .++.||+|.-.
T Consensus 262 f~iCa~s~tPIY~g~~~v~Cp~cgA~y~~~~------kG~lC~vC~l~ 303 (320)
T 3mkr_B 262 FDICAASYRPIYRGKPVEKCPLSGACYSPEF------KGQICKVTTVT 303 (320)
T ss_dssp CCBBTTTCCBCCTTSCCEECTTTCCEECGGG------TTSBCTTTSSB
T ss_pred cceecCCCccccCCCCCccCCCCCCeechhh------CCCCCCCCcCc
Confidence 4557777777655666666667999999865 67889999543
No 240
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=25.04 E-value=5.6 Score=22.34 Aligned_cols=14 Identities=21% Similarity=0.399 Sum_probs=6.0
Q ss_pred cccccccccCCCCC
Q 038049 119 CPTCRQRLKPSDAM 132 (141)
Q Consensus 119 CP~CR~~~~~~~~~ 132 (141)
||.|+..++..+++
T Consensus 29 C~~cg~~YPI~dGI 42 (70)
T 2js4_A 29 CNADRLAFPVRDGV 42 (70)
T ss_dssp ETTTTEEEEEETTE
T ss_pred cCCCCceecCCCCe
Confidence 44444444433333
No 241
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=24.78 E-value=18 Score=20.12 Aligned_cols=11 Identities=36% Similarity=1.011 Sum_probs=9.2
Q ss_pred Ccccccccccc
Q 038049 117 SSCPTCRQRLK 127 (141)
Q Consensus 117 ~~CP~CR~~~~ 127 (141)
..||+|.+++.
T Consensus 10 ~~CP~Cgkp~~ 20 (68)
T 1lv3_A 10 VNCPTCGKTVV 20 (68)
T ss_dssp EECTTTCCEEE
T ss_pred CcCCCCCCccc
Confidence 46999999886
No 242
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=24.04 E-value=77 Score=19.13 Aligned_cols=24 Identities=17% Similarity=0.344 Sum_probs=17.2
Q ss_pred cccccccccccccCCceeecCCCCCccc
Q 038049 78 SAGCAICLLDFIDGDEIRLLPKCNHRFH 105 (141)
Q Consensus 78 ~~~C~ICl~~~~~~~~v~~lp~C~H~Fh 105 (141)
...|+.|... ++.-.-|. |||++|
T Consensus 24 ~~~C~~C~~~---~~~W~CL~-CG~vgC 47 (109)
T 3c5k_A 24 TQPCGDCGTI---QENWVCLS-CYQVYC 47 (109)
T ss_dssp TCCCTTTCCC---SSEEEETT-TCCEEE
T ss_pred CCcCccccCC---CCeeeeee-cCcccc
Confidence 3569999854 34445676 999987
No 243
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=23.99 E-value=5.3 Score=22.29 Aligned_cols=16 Identities=25% Similarity=0.457 Sum_probs=7.7
Q ss_pred cccccccccCCCCCCC
Q 038049 119 CPTCRQRLKPSDAMPS 134 (141)
Q Consensus 119 CP~CR~~~~~~~~~~~ 134 (141)
||.|+..+...+++|.
T Consensus 29 C~~cg~~YPI~dGIPv 44 (68)
T 2hf1_A 29 CKGDRLAFPIKDGIPM 44 (68)
T ss_dssp ETTTTEEEEEETTEEC
T ss_pred cCCCCcEecCCCCeee
Confidence 5555555444444433
No 244
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=23.94 E-value=23 Score=22.42 Aligned_cols=26 Identities=23% Similarity=0.695 Sum_probs=17.6
Q ss_pred ccccccccccccCC-ceeecCCCCCcc
Q 038049 79 AGCAICLLDFIDGD-EIRLLPKCNHRF 104 (141)
Q Consensus 79 ~~C~ICl~~~~~~~-~v~~lp~C~H~F 104 (141)
..||-|-.+|.-.+ ...+.|.|+|-+
T Consensus 28 P~CP~C~seytYeDg~l~vCPeC~hEW 54 (138)
T 2akl_A 28 PPCPQCNSEYTYEDGALLVCPECAHEW 54 (138)
T ss_dssp CCCTTTCCCCCEECSSSEEETTTTEEE
T ss_pred CCCCCCCCcceEecCCeEECCcccccc
Confidence 66999998886544 344555677754
No 245
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=23.60 E-value=1e+02 Score=22.65 Aligned_cols=43 Identities=7% Similarity=-0.021 Sum_probs=30.8
Q ss_pred CcccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCcccccccc
Q 038049 77 ASAGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQR 125 (141)
Q Consensus 77 ~~~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~ 125 (141)
.-.-|+.=+.++..+......|-||-.||.+. +++.||+|.-.
T Consensus 270 ~F~iCa~s~tPIY~g~~~v~Cp~cgA~y~~~~------kG~lC~vC~l~ 312 (325)
T 3mv2_A 270 KFDICAATYKPIYEDTPSVSDPLTGSKYVITE------KDKIDRIAMIS 312 (325)
T ss_dssp CEEECTTTCCEEESSSCEEECTTTCCEEEGGG------TTSBCSSSSCB
T ss_pred CceeecCCcccccCCCCCccCCCCCCeechhh------CCCCCCCCcCc
Confidence 34557777776665666666667999999865 67889999643
No 246
>2yqp_A Probable ATP-dependent RNA helicase DDX59; structure genomics, ZF-HIT domain, DEAD box polypeptide 59 isoform 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.11 E-value=52 Score=17.63 Aligned_cols=22 Identities=9% Similarity=0.344 Sum_probs=13.7
Q ss_pred ceeecCCCCCCCCCcccccccc
Q 038049 64 TVTYANSGSSPSSASAGCAICL 85 (141)
Q Consensus 64 ~~~~~~~~~~~~~~~~~C~ICl 85 (141)
...+......+...+..|.+|-
T Consensus 5 ~~~~sk~Qr~p~pgePvCvvCG 26 (60)
T 2yqp_A 5 SSGFSKTQRWAEPGEPICVVCG 26 (60)
T ss_dssp CCCSCCCCCCCCTTSCCCSSSS
T ss_pred ccchhhhhcCCCCCCceEEEec
Confidence 3344444455566677899995
No 247
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=22.62 E-value=84 Score=15.67 Aligned_cols=8 Identities=25% Similarity=0.580 Sum_probs=4.9
Q ss_pred cccccccc
Q 038049 79 AGCAICLL 86 (141)
Q Consensus 79 ~~C~ICl~ 86 (141)
..|+.|-.
T Consensus 6 ~~CP~C~~ 13 (50)
T 1pft_A 6 KVCPACES 13 (50)
T ss_dssp CSCTTTSC
T ss_pred EeCcCCCC
Confidence 35777754
No 248
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=21.49 E-value=20 Score=25.26 Aligned_cols=15 Identities=33% Similarity=1.139 Sum_probs=13.4
Q ss_pred HHHHcCCCccccccc
Q 038049 110 DKWLLSHSSCPTCRQ 124 (141)
Q Consensus 110 ~~wl~~~~~CP~CR~ 124 (141)
+.|+..+..||.|-.
T Consensus 28 E~Wv~~n~yCPnCG~ 42 (257)
T 4esj_A 28 EDWVYRQSYCPNCGN 42 (257)
T ss_dssp HHHHHHHCCCTTTCC
T ss_pred HHHHHHCCcCCCCCC
Confidence 689999999999987
No 249
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=21.33 E-value=28 Score=17.71 Aligned_cols=8 Identities=38% Similarity=1.165 Sum_probs=6.5
Q ss_pred cccccccc
Q 038049 118 SCPTCRQR 125 (141)
Q Consensus 118 ~CP~CR~~ 125 (141)
.||+|.++
T Consensus 32 ~CP~Cg~~ 39 (46)
T 6rxn_A 32 CCPVCGVS 39 (46)
T ss_dssp BCTTTCCB
T ss_pred cCcCCCCc
Confidence 79999864
No 250
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=21.22 E-value=31 Score=19.98 Aligned_cols=33 Identities=30% Similarity=0.584 Sum_probs=21.0
Q ss_pred ccccccccccccCCceeec-CCCCCcccHhhHHHH
Q 038049 79 AGCAICLLDFIDGDEIRLL-PKCNHRFHVACIDKW 112 (141)
Q Consensus 79 ~~C~ICl~~~~~~~~v~~l-p~C~H~Fh~~Ci~~w 112 (141)
..|.||-.. ..+..+.-. +.|.-.||..|-..-
T Consensus 18 l~C~iC~~~-~~GAciqC~~~~C~~~fHv~CA~~a 51 (87)
T 2lq6_A 18 LTCYLCKQK-GVGASIQCHKANCYTAFHVTCAQKA 51 (87)
T ss_dssp CCBTTTTBC-CSSCEEECSCTTTCCEEEHHHHHHH
T ss_pred CCCcCCCCC-CCcEeEecCCCCCCCcCcHHHHHHC
Confidence 569999643 124433321 248889999998763
No 251
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.74 E-value=47 Score=17.07 Aligned_cols=36 Identities=22% Similarity=0.446 Sum_probs=22.0
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHHHcCCCccccccccccCCCC
Q 038049 79 AGCAICLLDFIDGDEIRLLPKCNHRFHVACIDKWLLSHSSCPTCRQRLKPSDA 131 (141)
Q Consensus 79 ~~C~ICl~~~~~~~~v~~lp~C~H~Fh~~Ci~~wl~~~~~CP~CR~~~~~~~~ 131 (141)
-.|.+|-..|.....+.. .....|+.|...+..+..
T Consensus 19 ~~C~~C~k~f~~~~~l~~-----------------~~~~~C~~C~~~f~~~~~ 54 (73)
T 2ctu_A 19 QKCSKCGIIFIRRSTLSR-----------------RKTPMCEKCRKDSCQEAA 54 (73)
T ss_dssp EECSSSCCEEECCCCCCC-----------------SSSCCCHHHHHTCSCCCS
T ss_pred eeCCcccchhCCHHHhCc-----------------CCCCCCCCCChhhcCHHH
Confidence 568888877766544332 344567877776654443
No 252
>2ll1_A U1-TRTX-SP1A; toxin; NMR {Theraphosidae}
Probab=20.11 E-value=18 Score=16.37 Aligned_cols=8 Identities=50% Similarity=1.447 Sum_probs=4.5
Q ss_pred CCCcccHhh
Q 038049 100 CNHRFHVAC 108 (141)
Q Consensus 100 C~H~Fh~~C 108 (141)
||| .|..|
T Consensus 2 cgh-lhdpc 9 (33)
T 2ll1_A 2 CGH-LHDPC 9 (33)
T ss_dssp CBC-SSCBC
T ss_pred Ccc-cCCCC
Confidence 777 45444
Done!