Query 038052
Match_columns 225
No_of_seqs 120 out of 1265
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 07:05:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038052.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038052hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02473 glutathione S-transfe 100.0 1.7E-40 3.7E-45 252.5 23.5 208 3-210 2-211 (214)
2 PLN02395 glutathione S-transfe 100.0 1.1E-38 2.3E-43 242.9 23.5 210 1-212 1-212 (215)
3 PRK09481 sspA stringent starva 100.0 6.8E-39 1.5E-43 243.0 20.7 194 3-212 10-204 (211)
4 PRK15113 glutathione S-transfe 100.0 2E-37 4.3E-42 235.4 18.9 204 1-213 1-211 (214)
5 PRK13972 GSH-dependent disulfi 100.0 4.6E-37 1E-41 233.7 18.8 200 3-213 1-208 (215)
6 PRK10542 glutathionine S-trans 100.0 7.1E-36 1.5E-40 225.0 18.2 194 4-211 1-198 (201)
7 KOG0406 Glutathione S-transfer 100.0 1.1E-35 2.3E-40 220.6 18.4 197 3-213 9-214 (231)
8 TIGR01262 maiA maleylacetoacet 100.0 2E-35 4.3E-40 224.1 19.8 202 5-212 1-206 (210)
9 COG0625 Gst Glutathione S-tran 100.0 8.9E-35 1.9E-39 220.6 20.5 193 4-205 1-199 (211)
10 PRK11752 putative S-transferas 100.0 1.2E-34 2.6E-39 226.0 21.3 201 3-212 44-260 (264)
11 KOG0867 Glutathione S-transfer 100.0 3E-34 6.6E-39 218.5 18.1 207 3-213 2-212 (226)
12 PRK10357 putative glutathione 100.0 1.1E-33 2.3E-38 213.3 19.5 196 4-209 1-199 (202)
13 KOG0868 Glutathione S-transfer 100.0 8.5E-34 1.8E-38 198.1 15.8 202 3-213 5-210 (217)
14 PTZ00057 glutathione s-transfe 100.0 2.2E-32 4.8E-37 206.4 20.2 197 1-215 1-204 (205)
15 TIGR00862 O-ClC intracellular 100.0 2.3E-31 4.9E-36 202.4 18.7 184 9-213 16-223 (236)
16 KOG1695 Glutathione S-transfer 100.0 1.2E-30 2.6E-35 192.5 17.4 198 1-213 1-203 (206)
17 PLN02378 glutathione S-transfe 100.0 7.5E-31 1.6E-35 199.0 15.4 181 8-213 16-202 (213)
18 PRK10387 glutaredoxin 2; Provi 100.0 1.1E-30 2.4E-35 198.1 15.7 187 4-204 1-207 (210)
19 PLN02817 glutathione dehydroge 100.0 6.3E-30 1.4E-34 198.5 16.5 178 9-211 70-252 (265)
20 TIGR02182 GRXB Glutaredoxin, G 100.0 7.9E-29 1.7E-33 187.4 13.1 187 5-204 1-206 (209)
21 KOG4420 Uncharacterized conser 100.0 6.7E-28 1.5E-32 178.2 14.3 210 3-213 26-290 (325)
22 PLN02907 glutamate-tRNA ligase 99.9 2.6E-23 5.6E-28 179.9 17.2 156 1-203 1-159 (722)
23 KOG1422 Intracellular Cl- chan 99.9 7.8E-23 1.7E-27 147.3 12.4 184 9-213 18-208 (221)
24 cd03052 GST_N_GDAP1 GST_N fami 99.9 1.1E-21 2.3E-26 123.2 8.7 73 4-76 1-73 (73)
25 cd03045 GST_N_Delta_Epsilon GS 99.8 6.7E-21 1.5E-25 120.3 8.8 74 4-77 1-74 (74)
26 cd03050 GST_N_Theta GST_N fami 99.8 1.9E-20 4.2E-25 118.8 9.7 76 4-79 1-76 (76)
27 cd03053 GST_N_Phi GST_N family 99.8 2.3E-20 4.9E-25 118.5 9.3 75 4-78 2-76 (76)
28 cd03048 GST_N_Ure2p_like GST_N 99.8 3.4E-20 7.3E-25 119.2 9.7 77 3-80 1-80 (81)
29 PF13417 GST_N_3: Glutathione 99.8 2.9E-20 6.2E-25 117.6 8.5 74 6-82 1-74 (75)
30 cd03041 GST_N_2GST_N GST_N fam 99.8 3.8E-20 8.3E-25 117.6 8.3 75 3-79 1-77 (77)
31 cd03056 GST_N_4 GST_N family, 99.8 5E-20 1.1E-24 116.0 8.6 73 4-76 1-73 (73)
32 cd03047 GST_N_2 GST_N family, 99.8 8.6E-20 1.9E-24 114.9 8.5 73 4-76 1-73 (73)
33 cd03059 GST_N_SspA GST_N famil 99.8 1.4E-19 3E-24 114.0 9.4 73 4-79 1-73 (73)
34 cd03057 GST_N_Beta GST_N famil 99.8 1.8E-19 4E-24 114.6 9.2 76 4-80 1-77 (77)
35 cd03046 GST_N_GTT1_like GST_N 99.8 2.7E-19 5.8E-24 113.6 9.4 76 4-80 1-76 (76)
36 cd03076 GST_N_Pi GST_N family, 99.8 8.9E-20 1.9E-24 114.7 7.0 72 3-77 1-72 (73)
37 cd03058 GST_N_Tau GST_N family 99.8 2.6E-19 5.5E-24 113.0 9.1 73 4-79 1-74 (74)
38 PF02798 GST_N: Glutathione S- 99.8 2.2E-19 4.8E-24 113.6 8.6 73 5-77 2-76 (76)
39 cd03042 GST_N_Zeta GST_N famil 99.8 2.4E-19 5.3E-24 112.9 8.5 73 4-76 1-73 (73)
40 cd03061 GST_N_CLIC GST_N famil 99.8 2.9E-19 6.2E-24 115.3 8.9 71 9-82 19-89 (91)
41 KOG4244 Failed axon connection 99.8 1.6E-18 3.6E-23 129.4 13.9 184 4-201 46-273 (281)
42 cd03051 GST_N_GTT2_like GST_N 99.8 2.1E-19 4.6E-24 113.4 7.8 73 4-76 1-74 (74)
43 cd03044 GST_N_EF1Bgamma GST_N 99.8 3E-19 6.4E-24 112.9 8.5 72 5-77 2-74 (75)
44 cd03039 GST_N_Sigma_like GST_N 99.8 4.8E-19 1E-23 111.1 6.8 72 4-77 1-72 (72)
45 cd03075 GST_N_Mu GST_N family, 99.8 1.1E-18 2.3E-23 112.1 8.4 76 4-79 1-82 (82)
46 cd03060 GST_N_Omega_like GST_N 99.8 1.3E-18 2.8E-23 108.8 8.4 69 4-75 1-70 (71)
47 cd03037 GST_N_GRX2 GST_N famil 99.8 2.2E-18 4.8E-23 107.8 7.4 70 4-77 1-71 (71)
48 cd03038 GST_N_etherase_LigE GS 99.7 5.1E-18 1.1E-22 109.7 7.7 70 10-80 14-84 (84)
49 cd03049 GST_N_3 GST_N family, 99.7 5.3E-18 1.2E-22 106.7 7.5 70 4-76 1-73 (73)
50 PF13409 GST_N_2: Glutathione 99.7 6.6E-18 1.4E-22 105.1 7.8 68 11-78 1-70 (70)
51 cd03080 GST_N_Metaxin_like GST 99.7 9.7E-18 2.1E-22 106.0 8.7 68 3-80 1-75 (75)
52 cd03077 GST_N_Alpha GST_N fami 99.7 1E-17 2.2E-22 106.8 8.7 72 3-80 1-77 (79)
53 cd03055 GST_N_Omega GST_N fami 99.7 7.9E-18 1.7E-22 109.9 8.2 71 3-76 18-89 (89)
54 cd03187 GST_C_Phi GST_C family 99.7 5.9E-17 1.3E-21 111.5 12.4 117 92-208 2-118 (118)
55 KOG3029 Glutathione S-transfer 99.7 4.7E-17 1E-21 122.3 12.4 194 3-201 90-355 (370)
56 cd03040 GST_N_mPGES2 GST_N fam 99.7 3.8E-17 8.3E-22 103.8 8.7 72 3-79 1-76 (77)
57 COG2999 GrxB Glutaredoxin 2 [P 99.7 2E-16 4.4E-21 111.2 12.4 186 4-205 1-208 (215)
58 cd03043 GST_N_1 GST_N family, 99.7 4.6E-17 9.9E-22 102.2 8.1 68 8-76 6-73 (73)
59 cd00570 GST_N_family Glutathio 99.7 3.5E-16 7.6E-21 97.3 8.1 71 4-76 1-71 (71)
60 cd03178 GST_C_Ure2p_like GST_C 99.7 1.4E-15 3E-20 103.9 10.3 112 92-208 1-112 (113)
61 cd03188 GST_C_Beta GST_C famil 99.7 6.4E-16 1.4E-20 105.7 8.2 113 92-208 2-114 (114)
62 cd03190 GST_C_ECM4_like GST_C 99.6 1.6E-15 3.4E-20 107.7 10.4 111 91-211 3-119 (142)
63 cd03196 GST_C_5 GST_C family, 99.6 1.1E-15 2.3E-20 104.7 8.5 110 91-208 5-115 (115)
64 COG0435 ECM4 Predicted glutath 99.6 8.1E-16 1.8E-20 115.6 8.4 194 4-208 52-284 (324)
65 cd03183 GST_C_Theta GST_C fami 99.6 4.6E-15 1E-19 103.3 11.8 119 92-211 1-123 (126)
66 cd03054 GST_N_Metaxin GST_N fa 99.6 1.2E-15 2.7E-20 95.5 7.8 65 4-78 1-72 (72)
67 cd03180 GST_C_2 GST_C family, 99.6 1.2E-14 2.7E-19 98.6 11.4 109 92-204 2-110 (110)
68 cd03209 GST_C_Mu GST_C family, 99.6 1.2E-14 2.6E-19 100.5 11.1 115 92-217 2-116 (121)
69 cd03186 GST_C_SspA GST_N famil 99.6 7.8E-15 1.7E-19 99.2 9.8 105 91-207 2-106 (107)
70 KOG3027 Mitochondrial outer me 99.6 4.8E-14 1E-18 101.6 14.2 178 12-200 34-247 (257)
71 cd03181 GST_C_EFB1gamma GST_C 99.6 2.7E-14 5.9E-19 98.9 12.3 117 92-212 1-118 (123)
72 cd03185 GST_C_Tau GST_C family 99.6 1E-14 2.2E-19 101.5 9.8 109 92-211 3-116 (126)
73 cd03177 GST_C_Delta_Epsilon GS 99.6 1.9E-14 4.2E-19 99.0 10.0 111 92-210 2-112 (118)
74 cd03189 GST_C_GTT1_like GST_C 99.6 1.9E-14 4.2E-19 99.1 9.8 113 88-202 2-119 (119)
75 KOG2903 Predicted glutathione 99.6 4.3E-15 9.2E-20 110.7 6.9 193 4-207 38-285 (319)
76 cd03191 GST_C_Zeta GST_C famil 99.6 3.4E-14 7.4E-19 98.2 10.7 116 91-210 2-119 (121)
77 cd03182 GST_C_GTT2_like GST_C 99.6 3.2E-14 6.8E-19 97.7 9.2 113 91-204 3-117 (117)
78 cd03210 GST_C_Pi GST_C family, 99.5 1E-13 2.2E-18 96.5 11.0 86 131-217 31-119 (126)
79 cd03208 GST_C_Alpha GST_C fami 99.5 6.2E-14 1.3E-18 98.9 8.8 79 134-213 38-118 (137)
80 cd03184 GST_C_Omega GST_C fami 99.5 5.8E-14 1.3E-18 97.5 8.5 108 92-212 2-115 (124)
81 cd03207 GST_C_8 GST_C family, 99.5 4.5E-14 9.8E-19 94.8 7.0 76 132-210 27-102 (103)
82 cd03198 GST_C_CLIC GST_C famil 99.5 1.7E-13 3.7E-18 95.1 9.1 86 127-212 21-126 (134)
83 PF00043 GST_C: Glutathione S- 99.5 2.1E-13 4.5E-18 90.1 8.0 73 129-202 22-95 (95)
84 cd03179 GST_C_1 GST_C family, 99.4 2.2E-13 4.8E-18 91.6 6.2 104 92-199 2-105 (105)
85 cd03079 GST_N_Metaxin2 GST_N f 99.4 6.5E-13 1.4E-17 82.4 7.3 60 10-78 15-74 (74)
86 cd03204 GST_C_GDAP1 GST_C fami 99.4 8.3E-13 1.8E-17 88.9 7.5 79 126-204 20-111 (111)
87 cd03206 GST_C_7 GST_C family, 99.4 1.1E-12 2.3E-17 87.6 8.0 99 97-204 2-100 (100)
88 cd03195 GST_C_4 GST_C family, 99.4 1.2E-12 2.6E-17 89.4 8.4 111 91-210 2-113 (114)
89 PF13410 GST_C_2: Glutathione 99.4 1.1E-12 2.5E-17 81.3 7.5 67 131-197 2-69 (69)
90 cd03203 GST_C_Lambda GST_C fam 99.4 1.8E-12 3.9E-17 89.4 8.7 71 140-211 35-112 (120)
91 KOG3028 Translocase of outer m 99.4 4.7E-11 1E-15 92.0 17.1 179 11-201 16-234 (313)
92 cd03200 GST_C_JTV1 GST_C famil 99.4 1.3E-12 2.8E-17 86.3 7.3 94 72-200 1-95 (96)
93 cd03194 GST_C_3 GST_C family, 99.4 5.8E-12 1.3E-16 86.0 10.0 107 97-209 4-113 (114)
94 cd03201 GST_C_DHAR GST_C famil 99.4 4.1E-12 8.8E-17 87.6 8.3 79 134-212 29-112 (121)
95 PRK10638 glutaredoxin 3; Provi 99.3 2.3E-11 5.1E-16 78.1 7.8 75 1-77 1-75 (83)
96 cd00299 GST_C_family Glutathio 99.3 1.5E-11 3.4E-16 81.5 7.1 98 97-198 2-100 (100)
97 cd03202 GST_C_etherase_LigE GS 99.3 3.2E-11 7E-16 83.6 8.1 68 133-200 56-123 (124)
98 cd03192 GST_C_Sigma_like GST_C 99.2 4.6E-11 1E-15 80.2 8.3 100 92-198 2-104 (104)
99 cd03078 GST_N_Metaxin1_like GS 99.2 7.3E-11 1.6E-15 73.6 7.8 59 10-78 14-72 (73)
100 cd03211 GST_C_Metaxin2 GST_C f 99.2 4E-11 8.6E-16 83.2 7.3 72 128-199 50-126 (126)
101 TIGR02190 GlrX-dom Glutaredoxi 99.2 8.5E-11 1.8E-15 74.8 7.5 71 3-76 9-79 (79)
102 PF14497 GST_C_3: Glutathione 99.2 8.3E-11 1.8E-15 78.2 6.7 67 131-200 31-99 (99)
103 cd03193 GST_C_Metaxin GST_C fa 99.2 1.2E-10 2.7E-15 75.7 7.1 66 134-199 18-88 (88)
104 cd03029 GRX_hybridPRX5 Glutare 99.1 1.1E-09 2.4E-14 68.3 8.0 71 3-76 2-72 (72)
105 cd03212 GST_C_Metaxin1_3 GST_C 99.1 6.3E-10 1.4E-14 78.3 7.2 72 129-200 58-134 (137)
106 cd03205 GST_C_6 GST_C family, 99.0 1.4E-09 3E-14 72.1 8.0 70 126-198 28-98 (98)
107 cd03027 GRX_DEP Glutaredoxin ( 98.9 5.3E-09 1.2E-13 65.4 7.0 69 3-73 2-70 (73)
108 cd03197 GST_C_mPGES2 GST_C fam 98.9 3.5E-09 7.6E-14 74.4 6.7 64 137-200 81-145 (149)
109 PF14834 GST_C_4: Glutathione 98.9 2.4E-08 5.2E-13 66.1 8.9 112 91-211 3-115 (117)
110 TIGR02196 GlrX_YruB Glutaredox 98.9 1.2E-08 2.7E-13 63.5 7.0 71 3-75 1-73 (74)
111 cd02066 GRX_family Glutaredoxi 98.8 1.9E-08 4.1E-13 62.3 7.2 70 3-74 1-70 (72)
112 cd02976 NrdH NrdH-redoxin (Nrd 98.8 2.1E-08 4.5E-13 62.4 6.3 64 3-68 1-64 (73)
113 cd03418 GRX_GRXb_1_3_like Glut 98.7 5.3E-08 1.2E-12 61.1 7.1 72 3-76 1-73 (75)
114 PRK10329 glutaredoxin-like pro 98.7 5.4E-08 1.2E-12 61.9 6.9 62 3-67 2-63 (81)
115 COG0695 GrxC Glutaredoxin and 98.7 6.4E-08 1.4E-12 61.4 6.9 74 3-76 2-75 (80)
116 TIGR02200 GlrX_actino Glutared 98.7 1.2E-07 2.6E-12 59.7 6.6 72 3-76 1-76 (77)
117 PRK11200 grxA glutaredoxin 1; 98.6 3.3E-07 7.2E-12 59.0 8.1 76 3-80 2-84 (85)
118 TIGR02181 GRX_bact Glutaredoxi 98.6 2E-07 4.4E-12 59.1 6.9 72 4-77 1-72 (79)
119 cd03419 GRX_GRXh_1_2_like Glut 98.5 7.6E-07 1.7E-11 56.8 7.3 76 3-78 1-77 (82)
120 PF00462 Glutaredoxin: Glutare 98.5 3E-07 6.5E-12 55.0 4.9 60 4-65 1-60 (60)
121 TIGR02194 GlrX_NrdH Glutaredox 98.5 4.9E-07 1.1E-11 56.2 5.9 57 4-63 1-57 (72)
122 TIGR02189 GlrX-like_plant Glut 98.4 1.1E-06 2.4E-11 58.2 7.2 72 3-74 9-81 (99)
123 TIGR02183 GRXA Glutaredoxin, G 98.4 1.5E-06 3.3E-11 56.0 7.6 75 4-80 2-83 (86)
124 PHA03050 glutaredoxin; Provisi 98.4 1.4E-06 3E-11 58.6 7.5 71 3-73 14-88 (108)
125 PF10568 Tom37: Outer mitochon 98.3 3.2E-06 7E-11 52.3 7.0 55 11-75 13-71 (72)
126 TIGR00365 monothiol glutaredox 98.2 1.2E-05 2.5E-10 53.1 7.2 71 3-75 13-88 (97)
127 TIGR02180 GRX_euk Glutaredoxin 98.2 1.1E-05 2.4E-10 51.5 7.0 74 4-77 1-77 (84)
128 cd03028 GRX_PICOT_like Glutare 98.1 2.5E-05 5.4E-10 50.8 7.2 71 3-75 9-84 (90)
129 PRK12759 bifunctional gluaredo 97.9 6.1E-05 1.3E-09 62.7 7.8 70 1-73 1-79 (410)
130 cd03031 GRX_GRX_like Glutaredo 97.7 0.00025 5.4E-09 50.3 7.2 69 4-74 2-80 (147)
131 PF04399 Glutaredoxin2_C: Glut 97.5 0.00029 6.2E-09 48.8 5.7 68 133-204 57-124 (132)
132 cd03199 GST_C_GRX2 GST_C famil 97.5 0.00042 9.1E-09 47.6 6.3 67 134-204 59-125 (128)
133 PRK10824 glutaredoxin-4; Provi 97.4 0.00083 1.8E-08 45.5 7.0 71 3-75 16-91 (115)
134 KOG1147 Glutamyl-tRNA syntheta 97.3 0.0002 4.4E-09 59.8 3.6 119 60-208 43-162 (712)
135 KOG1752 Glutaredoxin and relat 97.3 0.0022 4.7E-08 42.6 7.3 74 3-76 15-89 (104)
136 PRK10026 arsenate reductase; P 97.3 0.00048 1E-08 48.4 4.3 35 1-35 1-35 (141)
137 cd02973 TRX_GRX_like Thioredox 97.2 0.0021 4.5E-08 39.0 6.2 59 3-67 2-65 (67)
138 PTZ00062 glutaredoxin; Provisi 97.2 0.0023 4.9E-08 48.0 7.3 69 3-73 114-187 (204)
139 PRK01655 spxA transcriptional 97.0 0.001 2.2E-08 46.4 4.2 33 3-35 1-33 (131)
140 COG4545 Glutaredoxin-related p 97.0 0.0029 6.3E-08 38.5 5.3 66 1-66 1-77 (85)
141 cd03036 ArsC_like Arsenate Red 97.0 0.0011 2.4E-08 44.7 3.8 33 4-36 1-33 (111)
142 cd03032 ArsC_Spx Arsenate Redu 96.9 0.0014 3.1E-08 44.5 4.3 33 3-35 1-33 (115)
143 cd02977 ArsC_family Arsenate R 96.9 0.0017 3.6E-08 43.4 4.0 32 4-35 1-32 (105)
144 cd03030 GRX_SH3BGR Glutaredoxi 96.8 0.0096 2.1E-07 38.7 6.8 68 4-73 2-79 (92)
145 PRK13344 spxA transcriptional 96.7 0.0029 6.3E-08 44.1 4.3 33 3-35 1-33 (132)
146 PRK12559 transcriptional regul 96.6 0.0032 6.8E-08 43.9 4.2 34 3-36 1-34 (131)
147 TIGR01617 arsC_related transcr 96.5 0.0039 8.4E-08 42.5 4.0 32 4-35 1-32 (117)
148 COG1393 ArsC Arsenate reductas 96.5 0.0053 1.1E-07 41.8 4.2 33 3-35 2-34 (117)
149 cd03033 ArsC_15kD Arsenate Red 96.3 0.0071 1.5E-07 41.0 4.1 32 4-35 2-33 (113)
150 cd03035 ArsC_Yffb Arsenate Red 96.3 0.007 1.5E-07 40.4 3.9 32 4-35 1-32 (105)
151 PRK10853 putative reductase; P 96.2 0.009 2E-07 40.8 4.1 32 4-35 2-33 (118)
152 TIGR01616 nitro_assoc nitrogen 96.1 0.01 2.3E-07 40.9 4.2 33 3-35 2-34 (126)
153 TIGR00412 redox_disulf_2 small 95.7 0.12 2.7E-06 32.1 7.5 55 4-66 3-61 (76)
154 cd03034 ArsC_ArsC Arsenate Red 95.3 0.03 6.5E-07 37.9 3.9 32 4-35 1-32 (112)
155 TIGR00014 arsC arsenate reduct 95.2 0.032 6.9E-07 37.9 3.9 32 4-35 1-32 (114)
156 TIGR00411 redox_disulf_1 small 94.7 0.2 4.3E-06 31.2 6.4 57 3-63 2-62 (82)
157 cd03026 AhpF_NTD_C TRX-GRX-lik 94.7 0.18 3.9E-06 32.5 6.1 58 3-66 15-77 (89)
158 PF05768 DUF836: Glutaredoxin- 94.6 0.3 6.5E-06 30.8 7.0 55 3-62 1-57 (81)
159 PF04908 SH3BGR: SH3-binding, 94.5 0.16 3.5E-06 33.4 5.6 69 4-74 3-86 (99)
160 COG0278 Glutaredoxin-related p 94.2 0.2 4.4E-06 32.7 5.3 65 9-75 27-92 (105)
161 PHA02125 thioredoxin-like prot 93.8 0.37 7.9E-06 29.8 6.1 52 3-60 1-52 (75)
162 PF13192 Thioredoxin_3: Thiore 93.8 0.6 1.3E-05 28.9 7.0 57 4-68 3-63 (76)
163 cd01659 TRX_superfamily Thiore 93.0 0.33 7.2E-06 27.7 4.8 54 4-60 1-59 (69)
164 PF03960 ArsC: ArsC family; I 89.9 0.41 8.9E-06 32.1 3.2 29 7-35 1-29 (110)
165 PF11801 Tom37_C: Tom37 C-term 89.5 1.2 2.6E-05 32.5 5.5 40 140-179 113-156 (168)
166 PF11287 DUF3088: Protein of u 84.6 1.6 3.4E-05 29.2 3.4 69 11-82 23-110 (112)
167 TIGR03143 AhpF_homolog putativ 79.2 7.5 0.00016 34.1 6.7 59 3-67 479-542 (555)
168 KOG0911 Glutaredoxin-related p 77.9 6.3 0.00014 30.0 4.9 65 9-75 151-215 (227)
169 PF09635 MetRS-N: MetRS-N bind 77.7 1.3 2.8E-05 30.1 1.2 26 55-80 36-63 (122)
170 PRK15317 alkyl hydroperoxide r 77.5 3.1 6.8E-05 36.1 3.9 75 3-78 119-197 (517)
171 TIGR03140 AhpF alkyl hydropero 77.2 2.9 6.3E-05 36.3 3.5 75 3-78 120-198 (515)
172 cd02949 TRX_NTR TRX domain, no 77.1 17 0.00036 23.3 6.5 58 4-65 17-80 (97)
173 PF04134 DUF393: Protein of un 73.8 13 0.00029 24.7 5.5 72 6-78 1-77 (114)
174 TIGR01295 PedC_BrcD bacterioci 72.5 28 0.0006 23.7 7.8 62 4-65 27-103 (122)
175 cd02953 DsbDgamma DsbD gamma f 70.5 14 0.0003 24.0 4.9 55 4-59 15-77 (104)
176 PHA03075 glutaredoxin-like pro 68.6 10 0.00022 25.6 3.7 68 1-79 1-70 (123)
177 cd02947 TRX_family TRX family; 68.2 25 0.00053 21.5 7.1 55 4-64 14-75 (93)
178 cd02975 PfPDO_like_N Pyrococcu 64.6 29 0.00064 23.1 5.6 53 4-60 25-81 (113)
179 KOG1668 Elongation factor 1 be 62.5 5.2 0.00011 30.5 1.7 60 141-206 10-69 (231)
180 TIGR02187 GlrX_arch Glutaredox 61.6 39 0.00084 25.5 6.4 53 4-60 137-192 (215)
181 PF00085 Thioredoxin: Thioredo 60.2 41 0.00089 21.3 9.3 69 4-77 21-102 (103)
182 COG3019 Predicted metal-bindin 58.3 19 0.00041 25.3 3.7 72 3-80 27-105 (149)
183 PF10022 DUF2264: Uncharacteri 58.0 1.1E+02 0.0024 25.5 8.9 141 55-207 98-245 (361)
184 cd02989 Phd_like_TxnDC9 Phosdu 56.9 56 0.0012 21.8 7.2 61 4-68 26-91 (113)
185 PF01323 DSBA: DSBA-like thior 55.7 18 0.0004 26.3 3.7 35 3-37 1-40 (193)
186 PTZ00051 thioredoxin; Provisio 52.8 57 0.0012 20.6 6.4 58 4-65 22-84 (98)
187 TIGR02681 phage_pRha phage reg 49.2 22 0.00047 23.8 2.8 26 55-80 2-28 (108)
188 KOG2824 Glutaredoxin-related p 48.2 36 0.00078 26.9 4.2 59 14-74 149-211 (281)
189 cd04911 ACT_AKiii-YclM-BS_1 AC 47.8 20 0.00043 22.3 2.3 21 13-33 16-36 (76)
190 cd02959 ERp19 Endoplasmic reti 46.8 87 0.0019 21.0 5.6 58 4-65 23-90 (117)
191 cd02956 ybbN ybbN protein fami 46.8 47 0.001 20.9 4.2 57 4-64 16-78 (96)
192 COG2761 FrnE Predicted dithiol 45.9 14 0.00031 28.2 1.7 58 3-80 7-68 (225)
193 cd02955 SSP411 TRX domain, SSP 45.2 98 0.0021 21.2 5.9 64 5-68 20-97 (124)
194 PF11732 Thoc2: Transcription- 44.5 36 0.00077 21.3 3.0 42 155-199 35-76 (77)
195 COG3011 Predicted thiol-disulf 44.3 1.1E+02 0.0024 21.5 7.4 75 3-79 9-87 (137)
196 cd02997 PDI_a_PDIR PDIa family 44.0 48 0.001 21.1 4.0 54 4-59 21-80 (104)
197 cd03021 DsbA_GSTK DsbA family, 42.6 37 0.00081 25.4 3.6 34 3-36 2-39 (209)
198 PF09413 DUF2007: Domain of un 42.2 25 0.00055 20.8 2.2 32 4-35 1-32 (67)
199 cd02984 TRX_PICOT TRX domain, 41.7 88 0.0019 19.6 7.0 58 4-65 18-81 (97)
200 PRK10996 thioredoxin 2; Provis 40.7 1.2E+02 0.0026 21.0 6.4 58 4-65 56-119 (139)
201 cd02948 TRX_NDPK TRX domain, T 39.9 92 0.002 20.1 4.8 57 4-65 21-84 (102)
202 PRK09266 hypothetical protein; 39.3 35 0.00077 26.7 3.1 60 21-80 200-259 (266)
203 TIGR01764 excise DNA binding d 38.5 64 0.0014 17.1 3.4 26 51-76 23-48 (49)
204 PRK13947 shikimate kinase; Pro 36.8 48 0.001 23.6 3.3 33 1-33 1-33 (171)
205 PRK13949 shikimate kinase; Pro 36.8 51 0.0011 23.8 3.4 33 1-33 1-33 (169)
206 TIGR02187 GlrX_arch Glutaredox 35.7 1.9E+02 0.004 21.8 6.5 52 4-59 23-82 (215)
207 COG5494 Predicted thioredoxin/ 35.4 1.6E+02 0.0034 22.5 5.6 60 3-66 12-71 (265)
208 KOG2501 Thioredoxin, nucleored 34.5 1.2E+02 0.0027 21.8 4.9 30 9-38 42-78 (157)
209 PF12728 HTH_17: Helix-turn-he 33.9 85 0.0019 17.2 3.9 30 49-78 21-50 (51)
210 cd02963 TRX_DnaJ TRX domain, D 33.8 1.4E+02 0.003 19.6 8.1 57 4-64 28-91 (111)
211 PF11823 DUF3343: Protein of u 33.6 83 0.0018 19.1 3.5 33 4-36 3-35 (73)
212 PF12290 DUF3802: Protein of u 33.1 1.5E+02 0.0033 19.9 5.8 86 68-168 8-94 (113)
213 cd03022 DsbA_HCCA_Iso DsbA fam 32.4 56 0.0012 23.7 3.1 33 4-36 1-37 (192)
214 PHA02278 thioredoxin-like prot 31.4 1.5E+02 0.0033 19.4 7.5 62 4-65 18-85 (103)
215 PRK15371 effector protein YopJ 29.9 1.8E+02 0.004 23.3 5.6 48 133-181 21-68 (287)
216 cd03024 DsbA_FrnE DsbA family, 29.6 63 0.0014 23.7 3.0 33 4-36 1-41 (201)
217 cd02957 Phd_like Phosducin (Ph 29.2 1.2E+02 0.0026 20.0 4.1 60 4-68 28-92 (113)
218 cd02972 DsbA_family DsbA famil 28.9 67 0.0014 19.8 2.7 22 4-25 1-22 (98)
219 cd03020 DsbA_DsbC_DsbG DsbA fa 28.3 85 0.0018 23.2 3.5 22 3-24 80-101 (197)
220 cd03025 DsbA_FrnE_like DsbA fa 27.8 98 0.0021 22.5 3.7 34 3-36 2-41 (193)
221 PF03514 GRAS: GRAS domain fam 27.6 3.6E+02 0.0079 22.5 10.2 156 16-200 163-321 (374)
222 cd02954 DIM1 Dim1 family; Dim1 27.6 1.7E+02 0.0036 19.8 4.4 57 5-65 19-81 (114)
223 COG0703 AroK Shikimate kinase 26.8 95 0.0021 22.8 3.3 32 2-33 3-34 (172)
224 PF09314 DUF1972: Domain of un 26.2 75 0.0016 23.6 2.8 20 61-80 154-173 (185)
225 PRK11657 dsbG disulfide isomer 26.1 1E+02 0.0022 24.0 3.7 21 3-23 120-140 (251)
226 PF13098 Thioredoxin_2: Thiore 24.5 86 0.0019 20.3 2.7 34 4-37 9-49 (112)
227 cd02951 SoxW SoxW family; SoxW 24.1 2.3E+02 0.0049 18.9 5.8 16 4-19 18-33 (125)
228 PF03421 YopJ: YopJ Serine/Thr 24.0 2.3E+02 0.0049 20.9 4.9 60 138-198 2-62 (177)
229 cd02952 TRP14_like Human TRX-r 24.0 2.4E+02 0.0052 19.2 7.0 58 10-67 38-105 (119)
230 COG3150 Predicted esterase [Ge 23.8 77 0.0017 23.3 2.3 32 4-35 3-34 (191)
231 cd02987 Phd_like_Phd Phosducin 23.3 2.2E+02 0.0047 20.8 4.8 63 4-71 87-154 (175)
232 PF12123 Amidase02_C: N-acetyl 23.1 54 0.0012 18.1 1.1 30 49-78 10-39 (45)
233 KOG3425 Uncharacterized conser 22.8 2.6E+02 0.0057 19.2 5.5 69 10-79 43-123 (128)
234 PF07862 Nif11: Nitrogen fixat 22.8 1.1E+02 0.0024 16.8 2.5 22 190-211 5-26 (49)
235 COG5515 Uncharacterized conser 22.8 73 0.0016 18.8 1.7 21 4-24 3-27 (70)
236 cd00449 PLPDE_IV PyridoxaL 5'- 22.4 67 0.0015 24.8 2.0 58 21-78 196-255 (256)
237 cd03002 PDI_a_MPD1_like PDI fa 22.1 2E+02 0.0044 18.3 4.1 54 4-59 22-79 (109)
238 PF15608 PELOTA_1: PELOTA RNA 21.8 1.7E+02 0.0036 19.4 3.4 29 5-33 59-87 (100)
239 PRK06092 4-amino-4-deoxychoris 21.7 95 0.0021 24.3 2.8 58 21-79 208-265 (268)
240 PF13728 TraF: F plasmid trans 21.2 1.5E+02 0.0032 22.5 3.6 32 4-35 124-159 (215)
241 cd02992 PDI_a_QSOX PDIa family 21.2 1.7E+02 0.0038 19.3 3.6 21 4-24 23-43 (114)
242 PTZ00443 Thioredoxin domain-co 20.8 3.9E+02 0.0085 20.5 8.2 73 4-80 56-140 (224)
243 PRK09381 trxA thioredoxin; Pro 20.6 2.5E+02 0.0054 18.0 7.5 58 4-65 25-88 (109)
244 cd03003 PDI_a_ERdj5_N PDIa fam 20.4 1.4E+02 0.003 19.0 3.0 52 4-59 22-77 (101)
No 1
>PLN02473 glutathione S-transferase
Probab=100.00 E-value=1.7e-40 Score=252.52 Aligned_cols=208 Identities=42% Similarity=0.722 Sum_probs=176.1
Q ss_pred ceEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCEEeeehHHHHHHHHHhCCCC
Q 038052 3 VIKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQKIFESRAITQYIAMEYPEK 82 (225)
Q Consensus 3 ~~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~l~eS~aI~~yL~~~~~~~ 82 (225)
.|+||+++.|++++|++++|+++||+|+.+.++...++++++++..+||+|+||+|+++|.+|+||.||++||++.++..
T Consensus 2 ~~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~YL~~~~~~~ 81 (214)
T PLN02473 2 VVKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIEDGDLKLFESRAIARYYATKYADQ 81 (214)
T ss_pred ceEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCeEEECCEEEEehHHHHHHHHHHcCCc
Confidence 48999999999999999999999999999999999888889999999999999999999999999999999999999754
Q ss_pred CCCCCCCC-ccchHHHHHHHHHhhhcchhHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 038052 83 GTRLASAD-KPSSSFLIWKEVEAHQFDPVASKLTWEIVLKPMFGMTIDPTMVEEYKAKLAKVLDVYEARLTKSKYLASDS 161 (225)
Q Consensus 83 ~~~l~p~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~ 161 (225)
+..++|.+ .++++++.|+.+..+.+............+.+..+...+....+....++.+.++.+|++|++++|++|++
T Consensus 82 ~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd~ 161 (214)
T PLN02473 82 GTDLLGKTLEHRAIVDQWVEVENNYFYAVALPLVINLVFKPRLGEPCDVALVEELKVKFDKVLDVYENRLATNRYLGGDE 161 (214)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHHHHHhccCCcccCCC
Confidence 34689988 99999999999888777655444443333333223444556667778889999999999999889999999
Q ss_pred ccHhhhhhhhHHHHHHhh-hhhhhhccCchHHHHHHHHhcChhHHHHHhh
Q 038052 162 FTLVDMHHLPTINLLMRT-QVKQLFNARPRVSAWVADITARPAWTKVLAM 210 (225)
Q Consensus 162 ~t~aD~~l~~~l~~~~~~-~~~~~~~~~p~L~~~~~~~~~~p~~~~~~~~ 210 (225)
+|+||+++++.+.+.... ......+++|+|.+|++++.++|+++++++.
T Consensus 162 ~t~ADi~~~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~p~~~~~~~~ 211 (214)
T PLN02473 162 FTLADLTHMPGMRYIMNETSLSGLVTSRENLNRWWNEISARPAWKKLMEL 211 (214)
T ss_pred CCHHHHHHHHHHHHHHhccccHHHHhcCHHHHHHHHHHhcChhhHHHHHH
Confidence 999999999998876543 2223468999999999999999999999865
No 2
>PLN02395 glutathione S-transferase
Probab=100.00 E-value=1.1e-38 Score=242.87 Aligned_cols=210 Identities=44% Similarity=0.717 Sum_probs=173.2
Q ss_pred CcceEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCEEeeehHHHHHHHHHhCC
Q 038052 1 MGVIKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQKIFESRAITQYIAMEYP 80 (225)
Q Consensus 1 m~~~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~l~eS~aI~~yL~~~~~ 80 (225)
|+ +|||+... ++++|++++|+++|++|+.+.+++..++++++++++.||.|+||+|+++|.+|+||.||++||+++++
T Consensus 1 ~~-~~ly~~~~-~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~YL~~~~~ 78 (215)
T PLN02395 1 MV-LKVYGPAF-ASPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIVDGDYKIFESRAIMRYYAEKYR 78 (215)
T ss_pred Ce-EEEEcCCc-CcHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHHHcC
Confidence 65 89999665 46899999999999999999999887778889999999999999999999999999999999999997
Q ss_pred CCCCCCCCCC-ccchHHHHHHHHHhhhcchhHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 038052 81 EKGTRLASAD-KPSSSFLIWKEVEAHQFDPVASKLTWEIVLKPMFGMTIDPTMVEEYKAKLAKVLDVYEARLTKSKYLAS 159 (225)
Q Consensus 81 ~~~~~l~p~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G 159 (225)
..++.++|.+ .++++++.|+.+.+..+...+........+....+...+.+..+...+++.+.++.||++|++++|++|
T Consensus 79 ~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G 158 (215)
T PLN02395 79 SQGPDLLGKTIEERGQVEQWLDVEATSYHPPLLNLTLHILFASKMGFPADEKVIKESEEKLAKVLDVYEARLSKSKYLAG 158 (215)
T ss_pred CCCcCcCCCChhHHHHHHHHHHHHHHhcCchHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHhcCCccccC
Confidence 5433599988 999999999999887776655444333222222223334455667788899999999999998999999
Q ss_pred CCccHhhhhhhhHHHHHHhh-hhhhhhccCchHHHHHHHHhcChhHHHHHhhcc
Q 038052 160 DSFTLVDMHHLPTINLLMRT-QVKQLFNARPRVSAWVADITARPAWTKVLAMQK 212 (225)
Q Consensus 160 ~~~t~aD~~l~~~l~~~~~~-~~~~~~~~~p~L~~~~~~~~~~p~~~~~~~~~~ 212 (225)
+++|+||+++++.+.++... +.....+.+|+|.+|++++.++|+++++++..+
T Consensus 159 ~~~s~ADi~l~~~~~~~~~~~~~~~~~~~~p~L~~w~~~~~~rp~~k~~~~~~~ 212 (215)
T PLN02395 159 DFVSLADLAHLPFTEYLVGPIGKAYLIKDRKHVSAWWDDISSRPAWKEVLAKYS 212 (215)
T ss_pred CCcCHHHHHHHHHHHHHhcccchhhhhccCchHHHHHHHHHcChHHHHHHHHhc
Confidence 99999999999988776432 222346789999999999999999999998764
No 3
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=100.00 E-value=6.8e-39 Score=242.98 Aligned_cols=194 Identities=17% Similarity=0.263 Sum_probs=162.4
Q ss_pred ceEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCEEeeehHHHHHHHHHhCCCC
Q 038052 3 VIKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQKIFESRAITQYIAMEYPEK 82 (225)
Q Consensus 3 ~~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~l~eS~aI~~yL~~~~~~~ 82 (225)
+|+||+++.|++|++++++|+++|++|+.+.+++. +++++|+++||+|+||+|+++|.+|+||.||++||+++++..
T Consensus 10 ~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~---~~~~~~~~~nP~g~VPvL~~~g~~l~ES~AIl~YL~~~~~~~ 86 (211)
T PRK09481 10 VMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKD---NLPQDLIDLNPYQSVPTLVDRELTLYESRIIMEYLDERFPHP 86 (211)
T ss_pred eeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcc---cCCHHHHHhCCCCCCCEEEECCEEeeCHHHHHHHHHHhCCCC
Confidence 58999999999999999999999999999999874 567899999999999999999999999999999999999854
Q ss_pred CCCCCCCC-ccchHHHHHHHHHhhhcchhHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 038052 83 GTRLASAD-KPSSSFLIWKEVEAHQFDPVASKLTWEIVLKPMFGMTIDPTMVEEYKAKLAKVLDVYEARLTKSKYLASDS 161 (225)
Q Consensus 83 ~~~l~p~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~ 161 (225)
.++|.+ .++++++.|+.++...+....... ...++...+...+.+.+.+..+|++|++++|++|++
T Consensus 87 --~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~ 153 (211)
T PRK09481 87 --PLMPVYPVARGESRLMMHRIEKDWYSLMNKI-----------VNGSASEADAARKQLREELLAIAPVFGEKPYFMSEE 153 (211)
T ss_pred --CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-----------hcCCHHHHHHHHHHHHHHHHHHHHHhccCCcccCCC
Confidence 799988 999999999887665432221111 011234556777889999999999999999999999
Q ss_pred ccHhhhhhhhHHHHHHhhhhhhhhccCchHHHHHHHHhcChhHHHHHhhcc
Q 038052 162 FTLVDMHHLPTINLLMRTQVKQLFNARPRVSAWVADITARPAWTKVLAMQK 212 (225)
Q Consensus 162 ~t~aD~~l~~~l~~~~~~~~~~~~~~~p~L~~~~~~~~~~p~~~~~~~~~~ 212 (225)
+|+||+++++.+.++...+.....+.+|+|.+|++++.++|++++++....
T Consensus 154 ~t~AD~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~rp~~~~~~~~~~ 204 (211)
T PRK09481 154 FSLVDCYLAPLLWRLPVLGIELSGPGAKELKGYMTRVFERDSFLASLTEAE 204 (211)
T ss_pred ccHHHHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHhccHHHHHHcCHHH
Confidence 999999999999877655332112579999999999999999999987653
No 4
>PRK15113 glutathione S-transferase; Provisional
Probab=100.00 E-value=2e-37 Score=235.43 Aligned_cols=204 Identities=23% Similarity=0.288 Sum_probs=164.5
Q ss_pred Cc--ceEEeccC--CChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCEEeeehHHHHHHHH
Q 038052 1 MG--VIKVHGAA--MSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQKIFESRAITQYIA 76 (225)
Q Consensus 1 m~--~~~Ly~~~--~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~l~eS~aI~~yL~ 76 (225)
|+ +++||+.+ .|++|++++++|+++||+|+.+.+++..+++..++|+++||.|+||+|+++|.+|+||.||++||+
T Consensus 1 ~~~~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~~~~~l~ES~aI~~YL~ 80 (214)
T PRK15113 1 MSKPAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQHDDFELSESSAIAEYLE 80 (214)
T ss_pred CCCCeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCCCCCEEEECCEEEecHHHHHHHHH
Confidence 55 79999976 799999999999999999999999998888888999999999999999999999999999999999
Q ss_pred HhCCCCC-CCCCCCC-ccchHHHHHHHHHhhhcchhHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcC-
Q 038052 77 MEYPEKG-TRLASAD-KPSSSFLIWKEVEAHQFDPVASKLTWEIVLKPMFGMTIDPTMVEEYKAKLAKVLDVYEARLTK- 153 (225)
Q Consensus 77 ~~~~~~~-~~l~p~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~- 153 (225)
+.++..+ +.++|.+ .+++++++|+.+.+..+......... ...+.........+...+++.+.++.+|++|++
T Consensus 81 ~~~~~~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~ 156 (214)
T PRK15113 81 ERFAPPAWERIYPADLQARARARQIQAWLRSDLMPLREERPT----DVVFAGAKKAPLSEAGKAAAEKLFAVAERLLAPG 156 (214)
T ss_pred HHcCCCCccccCCCCHHHHHHHHHHHHHHHhhhHHHhccCcc----chhccCCCCCcccHHHHHHHHHHHHHHHHHHhcC
Confidence 9998541 1399999 99999999999887665432211000 001111122333456677789999999999975
Q ss_pred CCccccCCccHhhhhhhhHHHHHHhhhhhhhhccCchHHHHHHHHhcChhHHHHHhhccC
Q 038052 154 SKYLASDSFTLVDMHHLPTINLLMRTQVKQLFNARPRVSAWVADITARPAWTKVLAMQKV 213 (225)
Q Consensus 154 ~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~p~L~~~~~~~~~~p~~~~~~~~~~~ 213 (225)
+.|++|+ +|+||+++++.+.++...+.. + .|+|.+|++++.++|+++++++..++
T Consensus 157 ~~~l~G~-~TlADi~l~~~l~~~~~~~~~--~--~p~l~~~~~r~~~rp~~~~~~~~~~~ 211 (214)
T PRK15113 157 QPNLFGE-WCIADTDLALMLNRLVLHGDE--V--PERLADYATFQWQRASVQRWLALSAK 211 (214)
T ss_pred CCEeeCC-ccHHHHHHHHHHHHHHHcCCC--C--CHHHHHHHHHHhcCHHHHHHHHHhhh
Confidence 4799996 999999999999877654321 2 29999999999999999999988765
No 5
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=100.00 E-value=4.6e-37 Score=233.71 Aligned_cols=200 Identities=23% Similarity=0.420 Sum_probs=161.5
Q ss_pred ceEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEe-----CC--EEeeehHHHHHHH
Q 038052 3 VIKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEH-----GG--QKIFESRAITQYI 75 (225)
Q Consensus 3 ~~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~-----~~--~~l~eS~aI~~yL 75 (225)
|++||+.+ +++|++++++|+++||+|+.+.+++..+++++++|+++||.|+||+|++ +| .+|+||.||++||
T Consensus 1 m~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL 79 (215)
T PRK13972 1 MIDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLYL 79 (215)
T ss_pred CeEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHHHH
Confidence 47999887 7999999999999999999999999887788899999999999999996 45 5899999999999
Q ss_pred HHhCCCCCCCCCCCC-ccchHHHHHHHHHhhhcchhHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 038052 76 AMEYPEKGTRLASAD-KPSSSFLIWKEVEAHQFDPVASKLTWEIVLKPMFGMTIDPTMVEEYKAKLAKVLDVYEARLTKS 154 (225)
Q Consensus 76 ~~~~~~~~~~l~p~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~ 154 (225)
++.++ .+.|.+ .++++++.|+.|....+...+.... .+.. .....++...+...+++.+.|..+|++|+++
T Consensus 80 ~~~~~----~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~ 151 (215)
T PRK13972 80 AEKTG----LFLSHETRERAATLQWLFWQVGGLGPMLGQNH---HFNH-AAPQTIPYAIERYQVETQRLYHVLNKRLENS 151 (215)
T ss_pred HHhcC----CCCCCCHHHHHHHHHHHHHHhhccCcceeeee---eeec-cCCCCCchHHHHHHHHHHHHHHHHHHHhccC
Confidence 99985 467878 9999999999988777665432110 0000 0112234455667778999999999999999
Q ss_pred CccccCCccHhhhhhhhHHHHHHhhhhhhhhccCchHHHHHHHHhcChhHHHHHhhccC
Q 038052 155 KYLASDSFTLVDMHHLPTINLLMRTQVKQLFNARPRVSAWVADITARPAWTKVLAMQKV 213 (225)
Q Consensus 155 ~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~p~L~~~~~~~~~~p~~~~~~~~~~~ 213 (225)
+|++|+++|+||+++++.+....... ...+.+|+|.+|++++.++|++++++....-
T Consensus 152 ~~l~Gd~~t~ADi~l~~~~~~~~~~~--~~~~~~P~l~~w~~r~~~rp~~~~~~~~~~~ 208 (215)
T PRK13972 152 PWLGGENYSIADIACWPWVNAWTRQR--IDLAMYPAVKNWHERIRSRPATGQALLKAQL 208 (215)
T ss_pred ccccCCCCCHHHHHHHHHHHHHhhcC--CcchhCHHHHHHHHHHHhCHHHHHHHHHhcc
Confidence 99999999999999988775544332 2357899999999999999999998876543
No 6
>PRK10542 glutathionine S-transferase; Provisional
Probab=100.00 E-value=7.1e-36 Score=225.04 Aligned_cols=194 Identities=22% Similarity=0.352 Sum_probs=159.7
Q ss_pred eEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCC-CCchhHhhhCCCCCCCeEE-eCCEEeeehHHHHHHHHHhCCC
Q 038052 4 IKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGE-HKKEAYLSLNPFGQVPALE-HGGQKIFESRAITQYIAMEYPE 81 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~-~~~~~~~~~~P~g~vP~L~-~~~~~l~eS~aI~~yL~~~~~~ 81 (225)
|+||+...| ++++++++|+++||+|+.+.+++..++ ..+++|.++||.|+||+|+ +||.+|+||.+|++||++.++.
T Consensus 1 m~l~~~~~s-~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~YL~~~~~~ 79 (201)
T PRK10542 1 MKLFYKPGA-CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLTEGVAIMQYLADSVPD 79 (201)
T ss_pred CceeecccH-HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEeecHHHHHHHHHHhCcc
Confidence 589998865 799999999999999999999987654 4568999999999999998 5889999999999999999986
Q ss_pred CCCCCC-CCC-ccchHHHHHHHHHhhhcchhHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 038052 82 KGTRLA-SAD-KPSSSFLIWKEVEAHQFDPVASKLTWEIVLKPMFGMTIDPTMVEEYKAKLAKVLDVYEARLTKSKYLAS 159 (225)
Q Consensus 82 ~~~~l~-p~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G 159 (225)
. .++ |.+ .++++++.|+.+..+.+...+...+ .....+...+...+++.+.|+.+|+.|++++|++|
T Consensus 80 ~--~l~~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G 148 (201)
T PRK10542 80 R--QLLAPVGSLSRYHTIEWLNYIATELHKGFTPLF---------RPDTPEEYKPTVRAQLEKKFQYVDEALADEQWICG 148 (201)
T ss_pred c--ccCCCCCcHHHHHHHHHHHHHHhhhhhhhhhcc---------CCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeeeC
Confidence 4 455 566 8999999999887766554332211 11222334456678899999999999999999999
Q ss_pred CCccHhhhhhhhHHHHHHhhhhhhhhccCchHHHHHHHHhcChhHHHHHhhc
Q 038052 160 DSFTLVDMHHLPTINLLMRTQVKQLFNARPRVSAWVADITARPAWTKVLAMQ 211 (225)
Q Consensus 160 ~~~t~aD~~l~~~l~~~~~~~~~~~~~~~p~L~~~~~~~~~~p~~~~~~~~~ 211 (225)
+++|+||+++++.+.+....+. ..+.+|+|.+|++++.++|+++++++..
T Consensus 149 ~~~s~ADi~l~~~~~~~~~~~~--~~~~~p~l~~w~~~~~~~p~~k~~~~~~ 198 (201)
T PRK10542 149 QRFTIADAYLFTVLRWAYAVKL--NLEGLEHIAAYMQRVAERPAVAAALKAE 198 (201)
T ss_pred CCCcHHhHHHHHHHHHhhccCC--CcccchHHHHHHHHHHcCHHHHHHHHHc
Confidence 9999999999999888765432 2568999999999999999999998764
No 7
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-35 Score=220.56 Aligned_cols=197 Identities=25% Similarity=0.352 Sum_probs=169.1
Q ss_pred ceEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhC-CCCCCCeEEeCCEEeeehHHHHHHHHHhCCC
Q 038052 3 VIKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLN-PFGQVPALEHGGQKIFESRAITQYIAMEYPE 81 (225)
Q Consensus 3 ~~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~-P~g~vP~L~~~~~~l~eS~aI~~yL~~~~~~ 81 (225)
.++||+...|||++|++++|+.|||+|+.+.+++. ++++++++.| +.++||||+++|.+|+||..|++||++.+++
T Consensus 9 ~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~---~Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe~w~~ 85 (231)
T KOG0406|consen 9 TVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLT---NKSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYIDETWPS 85 (231)
T ss_pred eEEEEEeecChHHHHHHHHHHhcCCceEEEecCCC---CCCHHHHHhccccccCCEEEECCceehhhHHHHHHHHhhccC
Confidence 38999999999999999999999999999999986 4889999999 7799999999999999999999999999996
Q ss_pred CCCCCCCCC-ccchHHHHHHHHHhhhcchhHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHhhc-CCCcccc
Q 038052 82 KGTRLASAD-KPSSSFLIWKEVEAHQFDPVASKLTWEIVLKPMFGMTIDPTMVEEYKAKLAKVLDVYEARLT-KSKYLAS 159 (225)
Q Consensus 82 ~~~~l~p~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~-~~~~l~G 159 (225)
++.++|.+ .++|+.+.|+.+++..+........ .....+..+...+.+.+.|..||+.|+ +++|+.|
T Consensus 86 -~~~iLP~DPy~Ra~arfwa~~id~~~~~~~~~~~----------~~~~~e~~~~~~~e~~e~l~~lE~el~k~k~~fgG 154 (231)
T KOG0406|consen 86 -GPPILPSDPYERAQARFWAEYIDKKVFFVGRFVV----------AAKGGEEQEAAKEELREALKVLEEELGKGKDFFGG 154 (231)
T ss_pred -CCCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHH----------hhcCchHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 35899999 9999999999999876654443332 122334556777888999999999999 7899999
Q ss_pred CCccHhhhhhhhHHHHHHhhhh------hhhhccCchHHHHHHHHhcChhHHHHHhhccC
Q 038052 160 DSFTLVDMHHLPTINLLMRTQV------KQLFNARPRVSAWVADITARPAWTKVLAMQKV 213 (225)
Q Consensus 160 ~~~t~aD~~l~~~l~~~~~~~~------~~~~~~~p~L~~~~~~~~~~p~~~~~~~~~~~ 213 (225)
++++++|+++++.+.++..... ....+.+|+|.+|.++|.+++++++++....+
T Consensus 155 ~~~G~vDi~~~p~~~~~~~~~~~~~~~~~~~~~~~P~L~~W~~~~~~~~~V~~~~p~~e~ 214 (231)
T KOG0406|consen 155 ETIGFVDIAIGPSFERWLAVLEKFGGVKFIIEEETPKLIKWIKRMKEDEAVKAVLPDSEK 214 (231)
T ss_pred CCcCHhhhhHHhhHHHHHHHHHHhcCcccCCCCCCccHHHHHHHHhcChhHHhhcCCHHH
Confidence 9999999999988888777622 12357899999999999999999998876544
No 8
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=100.00 E-value=2e-35 Score=224.09 Aligned_cols=202 Identities=24% Similarity=0.364 Sum_probs=161.7
Q ss_pred EEeccCCChhhHHHHHHHHhcCCcceEEeccCC-CCCCCchhHhhhCCCCCCCeEEeCCEEeeehHHHHHHHHHhCCCCC
Q 038052 5 KVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMA-SGEHKKEAYLSLNPFGQVPALEHGGQKIFESRAITQYIAMEYPEKG 83 (225)
Q Consensus 5 ~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~-~~~~~~~~~~~~~P~g~vP~L~~~~~~l~eS~aI~~yL~~~~~~~~ 83 (225)
+||++..||+++++|++|+++||+|+.+.+++. .++++++++.++||+|+||+|+++|.+|+||.+|++||++.++..
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~yl~~~~~~~- 79 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSLAIIEYLEETYPDP- 79 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEECCEEeecHHHHHHHHHHhCCCC-
Confidence 589999999999999999999999999999873 245567889999999999999999999999999999999999864
Q ss_pred CCCCCCC-ccchHHHHHHHHHhhhcchhHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCC--CccccC
Q 038052 84 TRLASAD-KPSSSFLIWKEVEAHQFDPVASKLTWEIVLKPMFGMTIDPTMVEEYKAKLAKVLDVYEARLTKS--KYLASD 160 (225)
Q Consensus 84 ~~l~p~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~--~~l~G~ 160 (225)
.++|.+ .+++++++|+.++...+............ ....+ ..+....+...+.+.+.|..||++|+++ +|++|+
T Consensus 80 -~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~ 156 (210)
T TIGR01262 80 -PLLPADPIKRARVRALALLIACDIHPLNNLRVLQYL-REKLG-VEEEARNRWYQHWISKGFAALEALLQPHAGAFCVGD 156 (210)
T ss_pred -CCCCCCHHHHHHHHHHHHHHhcccChhhhhhHHHHH-HhhcC-CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEeeCC
Confidence 699988 99999999998887666543221111111 11111 1222334445667999999999999863 599999
Q ss_pred CccHhhhhhhhHHHHHHhhhhhhhhccCchHHHHHHHHhcChhHHHHHhhcc
Q 038052 161 SFTLVDMHHLPTINLLMRTQVKQLFNARPRVSAWVADITARPAWTKVLAMQK 212 (225)
Q Consensus 161 ~~t~aD~~l~~~l~~~~~~~~~~~~~~~p~L~~~~~~~~~~p~~~~~~~~~~ 212 (225)
++|+||+++++.+.++.... ...+.+|+|.+|+++|.++|++++++....
T Consensus 157 ~~T~ADi~~~~~l~~~~~~~--~~~~~~p~l~~~~~~~~~rp~~~~~~~~~~ 206 (210)
T TIGR01262 157 TPTLADLCLVPQVYNAERFG--VDLTPYPTLRRIAAALAALPAFQRAHPENQ 206 (210)
T ss_pred CCCHHHHHHHHHHHHHHHcC--CCcccchHHHHHHHHHhcCHHHHHhCcccC
Confidence 99999999999998865432 235789999999999999999999988763
No 9
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.9e-35 Score=220.58 Aligned_cols=193 Identities=32% Similarity=0.489 Sum_probs=166.6
Q ss_pred eEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCE-EeeehHHHHHHHHHhCCCC
Q 038052 4 IKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQ-KIFESRAITQYIAMEYPEK 82 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~-~l~eS~aI~~yL~~~~~~~ 82 (225)
++||+.+.||+|++++++|.++|++|+.+.+++.. ++++++|..+||.|+||+|++++. +|+||.||++||++.++..
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~-~~~~~~~~~~nP~gkVPvL~~~~~~~l~ES~AI~~YL~~~~~~~ 79 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDA-EQKPPDFLALNPLGKVPALVDDDGEVLTESGAILEYLAERYPGP 79 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCCceEEEeCccc-ccCCHHHHhcCCCCCCCEEeeCCCCeeecHHHHHHHHHhhCCCC
Confidence 58999999999999999999999999999999987 778899999999999999997765 9999999999999999864
Q ss_pred CCCCCCCC-c---cchHHHHHHHHHhhhcchhHHHHHHHHHHhccCCCCC-CHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 038052 83 GTRLASAD-K---PSSSFLIWKEVEAHQFDPVASKLTWEIVLKPMFGMTI-DPTMVEEYKAKLAKVLDVYEARLTKSKYL 157 (225)
Q Consensus 83 ~~~l~p~~-~---~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~le~~L~~~~~l 157 (225)
.++|.+ . +++.+..|..+....+...+....... ... ... ++...+.....+...+..+|+.|++++|+
T Consensus 80 --~l~p~~~~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l 153 (211)
T COG0625 80 --PLLPADPLARRARALLLWWLFFAASDLHPVIGQRRRAL-LGS---EPELLEAALEAARAEIRALLALLEALLADGPYL 153 (211)
T ss_pred --CcCCCCchhHHHHHHHHHHHHHHHhcccHHHHHHHhhh-ccc---cccccHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 499987 5 777888999988888887777666543 221 112 56777888999999999999999999999
Q ss_pred ccCCccHhhhhhhhHHHHHHhhhhhhhhccCchHHHHHHHHhcChhHH
Q 038052 158 ASDSFTLVDMHHLPTINLLMRTQVKQLFNARPRVSAWVADITARPAWT 205 (225)
Q Consensus 158 ~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~p~L~~~~~~~~~~p~~~ 205 (225)
+|+++|+||+++++.+.++...+.. .+.+|++.+|++++.++|+++
T Consensus 154 ~G~~~tiAD~~~~~~~~~~~~~~~~--~~~~p~l~~w~~r~~~rp~~~ 199 (211)
T COG0625 154 AGDRFTIADIALAPLLWRLALLGEE--LADYPALKAWYERVLARPAFR 199 (211)
T ss_pred cCCCCCHHHHHHHHHHHHhhhcCcc--cccChHHHHHHHHHHcCCchh
Confidence 9999999999999999986655321 278999999999999999964
No 10
>PRK11752 putative S-transferase; Provisional
Probab=100.00 E-value=1.2e-34 Score=226.02 Aligned_cols=201 Identities=19% Similarity=0.315 Sum_probs=160.8
Q ss_pred ceEEeccCCChhhHHHHHHHHhc------CCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeC----CEEeeehHHHH
Q 038052 3 VIKVHGAAMSTAAQRVFTCLYEK------ELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHG----GQKIFESRAIT 72 (225)
Q Consensus 3 ~~~Ly~~~~s~~~~~~r~~L~~~------gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~----~~~l~eS~aI~ 72 (225)
+|+||+.+ ||+|++|+++|+++ |++|+.+.+++..+++.+++|.++||.|+||+|+++ +.+|+||.||+
T Consensus 44 ~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~~dg~~~~~L~ES~AIl 122 (264)
T PRK11752 44 PLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLDRSGNPPIRVFESGAIL 122 (264)
T ss_pred CeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEeCCCCCCeEEEcHHHHH
Confidence 69999976 99999999999997 899999999998888888999999999999999974 37999999999
Q ss_pred HHHHHhCCCCCCCCCCCC-ccchHHHHHHHHHhhhcchhHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 038052 73 QYIAMEYPEKGTRLASAD-KPSSSFLIWKEVEAHQFDPVASKLTWEIVLKPMFGMTIDPTMVEEYKAKLAKVLDVYEARL 151 (225)
Q Consensus 73 ~yL~~~~~~~~~~l~p~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L 151 (225)
+||++.++ .++|.+ .++++++.|+.+....+ ......+... .. ......+...+...+++.+.|+.+|++|
T Consensus 123 ~YL~~~~~----~L~P~~~~era~v~~wl~~~~~~~-~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~L~~le~~L 194 (264)
T PRK11752 123 LYLAEKFG----AFLPKDLAARTETLNWLFWQQGSA-PFLGGGFGHF-YA--YAPEKIEYAINRFTMEAKRQLDVLDKQL 194 (264)
T ss_pred HHHHHhcC----CcCCCCHHHHHHHHHHHHHHhhhh-hHHHHHHHHH-HH--hCCccchHHHHHHHHHHHHHHHHHHHHh
Confidence 99999986 489988 99999999998876543 1111111111 11 0112223445666778899999999999
Q ss_pred cCCCccccCCccHhhhhhhhHHHHHHhh---hh--hhhhccCchHHHHHHHHhcChhHHHHHhhcc
Q 038052 152 TKSKYLASDSFTLVDMHHLPTINLLMRT---QV--KQLFNARPRVSAWVADITARPAWTKVLAMQK 212 (225)
Q Consensus 152 ~~~~~l~G~~~t~aD~~l~~~l~~~~~~---~~--~~~~~~~p~L~~~~~~~~~~p~~~~~~~~~~ 212 (225)
++++|++|+++|+|||++++.+.++... .. ....+.+|+|.+|+++|.++|++++++...+
T Consensus 195 ~~~~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~~~~~~P~L~~w~~rv~~rPs~k~~~~~~~ 260 (264)
T PRK11752 195 AEHEYIAGDEYTIADIAIWPWYGNLVLGNLYDAAEFLDVGSYKHVQRWAKEIAERPAVKRGRIVNR 260 (264)
T ss_pred ccCCCCCCCccCHHHHHHHHHHHHHhhccccccccccCcccCHHHHHHHHHHHhCHHHHHHHhccc
Confidence 9999999999999999999988776432 11 1125789999999999999999999988764
No 11
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-34 Score=218.51 Aligned_cols=207 Identities=35% Similarity=0.544 Sum_probs=182.0
Q ss_pred ceEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCEEeeehHHHHHHHHHhCCCC
Q 038052 3 VIKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQKIFESRAITQYIAMEYPEK 82 (225)
Q Consensus 3 ~~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~l~eS~aI~~yL~~~~~~~ 82 (225)
.++||++..|+.|+++.+++.++|++|+.+.+++..+++++++|..+||.|+||+|+++|..++||.||+.||.+++. .
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~~kVP~l~d~~~~l~eS~AI~~Yl~~ky~-~ 80 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPLGKVPALEDGGLTLWESHAILRYLAEKYG-P 80 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcCCCCCeEecCCeEEeeHHHHHHHHHHHcC-C
Confidence 489999999999999999999999999999999999999999999999999999999999999999999999999998 4
Q ss_pred C-CCCCCCC-ccchHHHHHHHHHhhhcchhHHHHHHHHHHhc-cCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 038052 83 G-TRLASAD-KPSSSFLIWKEVEAHQFDPVASKLTWEIVLKP-MFGMTIDPTMVEEYKAKLAKVLDVYEARLTKSKYLAS 159 (225)
Q Consensus 83 ~-~~l~p~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G 159 (225)
. ..++|.+ .+++.+++|+.+..+.+..... ....+.+ .++...+....+.....+.+.++.+|+.|.++.|+.|
T Consensus 81 ~~~~l~p~~~~~ra~v~~~l~~~~~~l~~~~~---~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~yl~g 157 (226)
T KOG0867|consen 81 LGGILLPKDLKERAIVDQWLEFENGVLDPVTF---ERPILAPLLVGLPLNPTAVKELEAKLRKALDNLERFLKTQVYLAG 157 (226)
T ss_pred CCcccCCcCHHHHHHHHHHHHhhhcccccccc---cceeeecceecccCcchhhHHHHHHHHHHHHHHHHHHccCCcccC
Confidence 3 3499999 9999999999999988887754 2223344 4456667888899999999999999999999999999
Q ss_pred CCccHhhhhhhhHHHHHHhhh-hhhhhccCchHHHHHHHHhcChhHHHHHhhccC
Q 038052 160 DSFTLVDMHHLPTINLLMRTQ-VKQLFNARPRVSAWVADITARPAWTKVLAMQKV 213 (225)
Q Consensus 160 ~~~t~aD~~l~~~l~~~~~~~-~~~~~~~~p~L~~~~~~~~~~p~~~~~~~~~~~ 213 (225)
+++|+||+.+.+.+..+.... ......++|++.+|++++.++|++++.......
T Consensus 158 ~~~tlADl~~~~~~~~~~~~~~~~~~~~~~p~v~~W~~~~~~~P~~~e~~~~~~~ 212 (226)
T KOG0867|consen 158 DQLTLADLSLASTLSQFQGKFATEKDFEKYPKVARWYERIQKRPAYEEANEKGAA 212 (226)
T ss_pred CcccHHHHHHhhHHHHHhHhhhhhhhhhhChHHHHHHHHHHhCccHHHHHHHHHH
Confidence 999999999999999984221 245678999999999999999999987765443
No 12
>PRK10357 putative glutathione S-transferase; Provisional
Probab=100.00 E-value=1.1e-33 Score=213.32 Aligned_cols=196 Identities=20% Similarity=0.272 Sum_probs=156.7
Q ss_pred eEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEE-eCCEEeeehHHHHHHHHHhCCCC
Q 038052 4 IKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALE-HGGQKIFESRAITQYIAMEYPEK 82 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~-~~~~~l~eS~aI~~yL~~~~~~~ 82 (225)
++||++..||+++++|++|+++||+|+.+.++...+ ++++...||.|+||+|+ ++|.+++||.+|++||++.++..
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~---~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~ 77 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITFEFVNELPYNA---DNGVAQYNPLGKVPALVTEEGECWFDSPIIAEYIELLNVAP 77 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCCeEEecCCCCC---chhhhhcCCccCCCeEEeCCCCeeecHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999998887543 35666789999999998 67899999999999999998743
Q ss_pred CCCCCCCC-ccchHHHHHHHHHhhhcchhHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 038052 83 GTRLASAD-KPSSSFLIWKEVEAHQFDPVASKLTWEIVLKPMFGMTIDPTMVEEYKAKLAKVLDVYEARLTKSKYLASDS 161 (225)
Q Consensus 83 ~~~l~p~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~ 161 (225)
.++|.+ .+++++++|..+.+..+...... ..... ..+....+...+...+.+.+.|+.+|++|++++ ++|++
T Consensus 78 --~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~-l~Gd~ 150 (202)
T PRK10357 78 --AMLPRDPLAALRVRQLEALADGIMDAALVS-VREQA---RPAAQQSEDELLRQREKINRSLDALEGYLVDGT-LKTDT 150 (202)
T ss_pred --CCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh---CccccccHHHHHHHHHHHHHHHHHHHHhhccCc-ccCCC
Confidence 699988 88999999988776655443322 11111 112233344556777889999999999998878 99999
Q ss_pred ccHhhhhhhhHHHHHHhhhh-hhhhccCchHHHHHHHHhcChhHHHHHh
Q 038052 162 FTLVDMHHLPTINLLMRTQV-KQLFNARPRVSAWVADITARPAWTKVLA 209 (225)
Q Consensus 162 ~t~aD~~l~~~l~~~~~~~~-~~~~~~~p~L~~~~~~~~~~p~~~~~~~ 209 (225)
+|+||+++++.+.++..... ......+|+|.+|++++.++|+++++..
T Consensus 151 ~t~ADi~l~~~l~~~~~~~~~~~~~~~~p~l~~~~~~i~~rp~~~~~~~ 199 (202)
T PRK10357 151 VNLATIAIACAVGYLNFRRVAPGWCVDRPHLVKLVENLFQRESFARTEP 199 (202)
T ss_pred cCHHHHHHHHHHHHHHhcccCcchhhcChHHHHHHHHHhcChhhhhcCC
Confidence 99999999999987755321 1234679999999999999999998754
No 13
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.5e-34 Score=198.14 Aligned_cols=202 Identities=19% Similarity=0.250 Sum_probs=169.4
Q ss_pred ceEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCC-CCchhHhhhCCCCCCCeEEeCCEEeeehHHHHHHHHHhCCC
Q 038052 3 VIKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGE-HKKEAYLSLNPFGQVPALEHGGQKIFESRAITQYIAMEYPE 81 (225)
Q Consensus 3 ~~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~-~~~~~~~~~~P~g~vP~L~~~~~~l~eS~aI~~yL~~~~~~ 81 (225)
+++||++--|.+++|||++|+.+||+|+.++|++.+++ +...+|.++||+++||+|++||.+++||.||++||++.+|+
T Consensus 5 KpiLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i~g~tl~eS~AII~YLeEt~P~ 84 (217)
T KOG0868|consen 5 KPILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVIDGLTLTESLAIIEYLEETYPD 84 (217)
T ss_pred cchhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEECCEEeehHHHHHHHHHhcCCC
Confidence 78999999999999999999999999999999987764 56779999999999999999999999999999999999997
Q ss_pred CCCCCCCCC-ccchHHHHHHHHHhhhcchhHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcC--CCccc
Q 038052 82 KGTRLASAD-KPSSSFLIWKEVEAHQFDPVASKLTWEIVLKPMFGMTIDPTMVEEYKAKLAKVLDVYEARLTK--SKYLA 158 (225)
Q Consensus 82 ~~~~l~p~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~--~~~l~ 158 (225)
+ .|+|.+ ..||.+++....+.+.+.+.-...+.... ++.....-..-+..-+.+.|..||+.|+. ++|-+
T Consensus 85 p--pLLP~d~~KRA~~r~i~~~i~sgIQPlQNl~vl~~l-----~ek~~~~~~~W~q~~ItkGF~ALEklL~~~aGkycv 157 (217)
T KOG0868|consen 85 P--PLLPKDPHKRAKARAISLLIASGIQPLQNLSVLKML-----NEKEPGYGDQWAQHFITKGFTALEKLLKSHAGKYCV 157 (217)
T ss_pred C--CCCCcCHHHHHHHHHHHHHHHhCCCcchhhHHHHHh-----cccccchhhHHHHHHHHHhHHHHHHHHHHccCCccc
Confidence 6 899999 99999999999888888765444333222 22222111233445567899999999974 58999
Q ss_pred cCCccHhhhhhhhHHHHHHhhhhhhhhccCchHHHHHHHHhcChhHHHHHhhccC
Q 038052 159 SDSFTLVDMHHLPTINLLMRTQVKQLFNARPRVSAWVADITARPAWTKVLAMQKV 213 (225)
Q Consensus 159 G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~p~L~~~~~~~~~~p~~~~~~~~~~~ 213 (225)
||++|+||+++.+.+....... -.+..||.+.+..+.+.+.|.|+.+..+...
T Consensus 158 GDevtiADl~L~pqv~nA~rf~--vdl~PYPti~ri~e~l~elpaFq~ahP~nQP 210 (217)
T KOG0868|consen 158 GDEVTIADLCLPPQVYNANRFH--VDLTPYPTITRINEELAELPAFQAAHPDNQP 210 (217)
T ss_pred Cceeehhhhccchhhhhhhhcc--ccCCcCchHHHHHHHHHhCHHHHhcCCCCCC
Confidence 9999999999999999985543 3478999999999999999999998776544
No 14
>PTZ00057 glutathione s-transferase; Provisional
Probab=100.00 E-value=2.2e-32 Score=206.39 Aligned_cols=197 Identities=15% Similarity=0.142 Sum_probs=142.3
Q ss_pred Cc-ceEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCC-CchhHh--hhCCCCCCCeEEeCCEEeeehHHHHHHHH
Q 038052 1 MG-VIKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEH-KKEAYL--SLNPFGQVPALEHGGQKIFESRAITQYIA 76 (225)
Q Consensus 1 m~-~~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~-~~~~~~--~~~P~g~vP~L~~~~~~l~eS~aI~~yL~ 76 (225)
|. +++|||++.+++++++|++|+++|++|+.+.++....+. ..+++. ..||+|+||+|++||.+|+||.||++||+
T Consensus 1 m~~~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~~YLa 80 (205)
T PTZ00057 1 MAEEIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGENGDAFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIVRYLS 80 (205)
T ss_pred CCCceEEEecCCCcchHHHHHHHHHcCCCeEEEeccccchHHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHHHHHH
Confidence 55 699999999999999999999999999999764211000 011112 47999999999999999999999999999
Q ss_pred HhCCCCCCCCCCCCccchHHHHHHHHHh-hhcchhHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCC-
Q 038052 77 MEYPEKGTRLASADKPSSSFLIWKEVEA-HQFDPVASKLTWEIVLKPMFGMTIDPTMVEEYKAKLAKVLDVYEARLTKS- 154 (225)
Q Consensus 77 ~~~~~~~~~l~p~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~- 154 (225)
++++. .+.+ ..+++..|+.+.. ..+...+ ...... .+...+...+.+.+.+..||+.|+++
T Consensus 81 ~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~--------~~~~~~~~~~~~~~~l~~le~~L~~~~ 143 (205)
T PTZ00057 81 KKYKI-----CGES-ELNEFYADMIFCGVQDIHYKF---NNTNLF--------KQNETTFLNEELPKWSGYFENILKKNH 143 (205)
T ss_pred HHcCC-----CCCC-HHHHHHHHHHHHHHHHHHHHH---hhhHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99973 2333 3333333332221 1111111 100000 11222445678899999999999754
Q ss_pred -CccccCCccHhhhhhhhHHHHHHhhhhhhhhccCchHHHHHHHHhcChhHHHHHhhccCCc
Q 038052 155 -KYLASDSFTLVDMHHLPTINLLMRTQVKQLFNARPRVSAWVADITARPAWTKVLAMQKVNF 215 (225)
Q Consensus 155 -~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~p~L~~~~~~~~~~p~~~~~~~~~~~~~ 215 (225)
+|++|+++|+||+++++.+.++... ....++.+|+|.+|++++.++|+++++++++...+
T Consensus 144 ~~~l~Gd~~T~AD~~l~~~~~~~~~~-~~~~l~~~P~l~~~~~r~~~~P~~k~y~~~~~~~~ 204 (205)
T PTZ00057 144 CNYFVGDNLTYADLAVFNLYDDIETK-YPNSLKNFPLLKAHNEFISNLPNIKNYISNRKESV 204 (205)
T ss_pred CCeeeCCcccHHHHHHHHHHHHHHHh-ChhhhccChhHHHHHHHHHhChHHHHHHHhCCCcC
Confidence 7999999999999999998887542 23456899999999999999999999999887643
No 15
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=100.00 E-value=2.3e-31 Score=202.36 Aligned_cols=184 Identities=20% Similarity=0.250 Sum_probs=140.3
Q ss_pred cCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCEEeeehHHHHHHHHHhCCCC-CCCCC
Q 038052 9 AAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQKIFESRAITQYIAMEYPEK-GTRLA 87 (225)
Q Consensus 9 ~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~l~eS~aI~~yL~~~~~~~-~~~l~ 87 (225)
...||+|++++++|+++||+|+.+.+++.. ++++|+++||.|+||+|+++|.+|+||.+|++||++.++.+ .+.+.
T Consensus 16 ~~~cp~~~rv~i~L~ekgi~~e~~~vd~~~---~~~~fl~inP~g~vPvL~~~g~~l~ES~aI~eYL~e~~~~~~~p~l~ 92 (236)
T TIGR00862 16 IGNCPFSQRLFMILWLKGVVFNVTTVDLKR---KPEDLQNLAPGTHPPFLTYNTEVKTDVNKIEEFLEETLCPPRYPKLS 92 (236)
T ss_pred CCCCHhHHHHHHHHHHcCCCcEEEEECCCC---CCHHHHHHCcCCCCCEEEECCEEeecHHHHHHHHHHHcCCCCCCCCC
Confidence 468999999999999999999999999873 47999999999999999999999999999999999999743 12333
Q ss_pred CCC-ccchHHHHHHHHHhhhcchhHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHhhc--------------
Q 038052 88 SAD-KPSSSFLIWKEVEAHQFDPVASKLTWEIVLKPMFGMTIDPTMVEEYKAKLAKVLDVYEARLT-------------- 152 (225)
Q Consensus 88 p~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~-------------- 152 (225)
|.+ ..++... .+...+..++ ....+...+...+.+.+.+..||+.|+
T Consensus 93 p~~~~~~~~~~--------~l~~~~~~~~----------~~~~~~~~~~~~~~l~~~l~~Le~~L~~~~~~~~~~~~~~~ 154 (236)
T TIGR00862 93 PKHPESNTAGL--------DIFAKFSAYI----------KNSNPEANDNLEKGLLKALKKLDDYLNSPLPEEIDEDSAED 154 (236)
T ss_pred CCCHHHHHHHH--------HHHHHHHHHH----------HcCCHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccc
Confidence 433 2222110 0111111111 111233334556668899999999986
Q ss_pred ----CCCccccCCccHhhhhhhhHHHHHHhhh----hhhhhccCchHHHHHHHHhcChhHHHHHhhccC
Q 038052 153 ----KSKYLASDSFTLVDMHHLPTINLLMRTQ----VKQLFNARPRVSAWVADITARPAWTKVLAMQKV 213 (225)
Q Consensus 153 ----~~~~l~G~~~t~aD~~l~~~l~~~~~~~----~~~~~~~~p~L~~~~~~~~~~p~~~~~~~~~~~ 213 (225)
+++|+.|+++|+|||++++.+.++.... ...+.+.+|+|.+|++++.++|+|++++.....
T Consensus 155 ~~~~~~~f~~Gd~~tlaD~~l~p~l~~l~~~~~~~~~~~i~~~~p~l~~w~~~~~~~~sf~~t~p~~~~ 223 (236)
T TIGR00862 155 EKVSRRKFLDGDELTLADCNLLPKLHIVKVVAKKYRNFDIPAEFTGVWRYLSNAYAREEFTNTCPDDKE 223 (236)
T ss_pred ccccCCCcccCCccchhhHHHHHHHHHHHHHHHHHhCcCccccCchHHHHHHHHhccchHHhhCCChHH
Confidence 5799999999999999999999988641 223478999999999999999999998766543
No 16
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.2e-30 Score=192.52 Aligned_cols=198 Identities=21% Similarity=0.237 Sum_probs=161.1
Q ss_pred CcceEEeccCCChhhHHHHHHHHhcCCcceEEeccCCC-CCCCchhHhhhCCCCCCCeEEeCCEEeeehHHHHHHHHHhC
Q 038052 1 MGVIKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMAS-GEHKKEAYLSLNPFGQVPALEHGGQKIFESRAITQYIAMEY 79 (225)
Q Consensus 1 m~~~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~-~~~~~~~~~~~~P~g~vP~L~~~~~~l~eS~aI~~yL~~~~ 79 (225)
|.+++|+|++..+.+..+|++++..|++|++++++... |. ..+...|+|++|+|..||..|.||.||++||++++
T Consensus 1 m~~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~w~----~~K~~~pfgqlP~l~vDg~~i~QS~AI~RyLArk~ 76 (206)
T KOG1695|consen 1 MPPYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDAWE----ELKDKMPFGQLPVLEVDGKKLVQSRAILRYLARKF 76 (206)
T ss_pred CCceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccchh----hhcccCCCCCCCEEeECCEeeccHHHHHHHHHHHh
Confidence 78899999999999999999999999999999999876 43 33344899999999999999999999999999999
Q ss_pred CCCCCCCCCCC-ccchHHHHHHHHHhhhcchhHHHHHHHHHHhccCCCCCCHHHHH-HHHHHHHHHHHHHHHhhc--CCC
Q 038052 80 PEKGTRLASAD-KPSSSFLIWKEVEAHQFDPVASKLTWEIVLKPMFGMTIDPTMVE-EYKAKLAKVLDVYEARLT--KSK 155 (225)
Q Consensus 80 ~~~~~~l~p~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~le~~L~--~~~ 155 (225)
+ +.+.+ .+.+.++.+.+-..+.....+...+. .... ...+...+ .......+.+..+++.|. +++
T Consensus 77 g-----l~Gkt~~E~a~vD~i~d~~~D~~~~~~~~~~~----~~~~--g~~~~~~~~~~~Pa~~~~~~~~~~~L~~~~sg 145 (206)
T KOG1695|consen 77 G-----LAGKTEEEEAWVDMIVDQFKDFRWEIFRQPYT----APEA--GKSEEELDKLYLPAKPKYFKILEKILKKNKSG 145 (206)
T ss_pred C-----cCCCCHHHHHHHHHHHHhhhhHHHHHHHHhhh----hhhh--ccchhhhhhhhccchHHHHHHHHHHHHhCCCC
Confidence 6 77888 99999998887665544442222221 1111 12222222 566777889999999998 458
Q ss_pred ccccCCccHhhhhhhhHHHHHHhhhhhhhhccCchHHHHHHHHhcChhHHHHHhhccC
Q 038052 156 YLASDSFTLVDMHHLPTINLLMRTQVKQLFNARPRVSAWVADITARPAWTKVLAMQKV 213 (225)
Q Consensus 156 ~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~p~L~~~~~~~~~~p~~~~~~~~~~~ 213 (225)
|++||++|+||+.++..+..+......+....+|+|+++.+++.++|+++++++.+..
T Consensus 146 flvGd~lT~aDl~i~e~l~~l~~~~~~~~~~~~P~L~a~~~kv~~~p~ik~~i~~r~~ 203 (206)
T KOG1695|consen 146 FLVGDKLTWADLVIAEHLDTLEELLDPSALDHFPKLKAFKERVSSIPNIKKYLESRPV 203 (206)
T ss_pred eeecCcccHHHHHHHHHHHHHHHhcCchhhccChHHHHHHHHHhcCchHHHHHhcCCC
Confidence 9999999999999999999998853446678899999999999999999999998865
No 17
>PLN02378 glutathione S-transferase DHAR1
Probab=99.97 E-value=7.5e-31 Score=199.03 Aligned_cols=181 Identities=18% Similarity=0.247 Sum_probs=137.0
Q ss_pred ccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCEEeeehHHHHHHHHHhCCCCCCCCC
Q 038052 8 GAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQKIFESRAITQYIAMEYPEKGTRLA 87 (225)
Q Consensus 8 ~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~l~eS~aI~~yL~~~~~~~~~~l~ 87 (225)
.+..||+|+|++++|+++|++|+.+.+++. .++++|.++||.|+||+|+++|.+|+||.+|++||+++++.. .+.
T Consensus 16 ~~~~~p~~~rv~~~L~e~gl~~e~~~v~~~---~~~~~~l~inP~G~VPvL~~~~~~l~ES~aI~~YL~~~~~~~--~l~ 90 (213)
T PLN02378 16 HLGDCPFSQRALLTLEEKSLTYKIHLINLS---DKPQWFLDISPQGKVPVLKIDDKWVTDSDVIVGILEEKYPDP--PLK 90 (213)
T ss_pred CCCCCcchHHHHHHHHHcCCCCeEEEeCcc---cCCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHHhCCCC--CCC
Confidence 455699999999999999999999999986 356799999999999999999999999999999999999853 342
Q ss_pred CCCccchHHHHHHHHHhhhcchhHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHhhc--CCCccccCCccHh
Q 038052 88 SADKPSSSFLIWKEVEAHQFDPVASKLTWEIVLKPMFGMTIDPTMVEEYKAKLAKVLDVYEARLT--KSKYLASDSFTLV 165 (225)
Q Consensus 88 p~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~--~~~~l~G~~~t~a 165 (225)
+. .+++.++..+ ...+.... . +... .+...+.+.+.|+.+|++|+ +++|++|+++|+|
T Consensus 91 ~~-~~~a~i~~~~-------~~~~~~~~-----~---~~~~----~~~~~~~~~~~l~~le~~L~~~~~~fl~Gd~~T~A 150 (213)
T PLN02378 91 TP-AEFASVGSNI-------FGTFGTFL-----K---SKDS----NDGSEHALLVELEALENHLKSHDGPFIAGERVSAV 150 (213)
T ss_pred CH-HHHHHHHHHH-------HHHHHHHH-----h---cCCh----hhHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCchh
Confidence 11 4555444322 11111111 1 1111 12334567788999999998 4689999999999
Q ss_pred hhhhhhHHHHHHhhhh----hhhhccCchHHHHHHHHhcChhHHHHHhhccC
Q 038052 166 DMHHLPTINLLMRTQV----KQLFNARPRVSAWVADITARPAWTKVLAMQKV 213 (225)
Q Consensus 166 D~~l~~~l~~~~~~~~----~~~~~~~p~L~~~~~~~~~~p~~~~~~~~~~~ 213 (225)
|+++++.+.++..... ....+.+|+|.+|++++.++|++++++.....
T Consensus 151 Di~l~~~~~~l~~~~~~~~~~~~~~~~p~l~~w~~~~~~rpa~~~~~~~~~~ 202 (213)
T PLN02378 151 DLSLAPKLYHLQVALGHFKSWSVPESFPHVHNYMKTLFSLDSFEKTKTEEKY 202 (213)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCchhHhHHHHHHHHHHhcCCCeecccCChHH
Confidence 9999999887654311 12357899999999999999999988776543
No 18
>PRK10387 glutaredoxin 2; Provisional
Probab=99.97 E-value=1.1e-30 Score=198.09 Aligned_cols=187 Identities=15% Similarity=0.137 Sum_probs=139.5
Q ss_pred eEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEE-eCCEEeeehHHHHHHHHHhCCCC
Q 038052 4 IKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALE-HGGQKIFESRAITQYIAMEYPEK 82 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~-~~~~~l~eS~aI~~yL~~~~~~~ 82 (225)
|+||+++.||+|+|+|++|+++||+|+.+.++... +.. ....||.|+||+|+ ++|.+++||.||++||+++++..
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~--~~~--~~~~~p~~~VPvL~~~~g~~l~eS~aI~~yL~~~~~~~ 76 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDD--EAT--PIRMIGQKQVPILQKDDGSYMPESLDIVHYIDELDGKP 76 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCc--hhh--HHHhcCCcccceEEecCCeEecCHHHHHHHHHHhCCCc
Confidence 68999999999999999999999999998876432 222 25689999999995 88999999999999999999853
Q ss_pred CCCCCCCCccchHHHHHHHHHhhhcchhHHHHHHHHHH----------------hccCCCCCCH---HHHHHHHHHHHHH
Q 038052 83 GTRLASADKPSSSFLIWKEVEAHQFDPVASKLTWEIVL----------------KPMFGMTIDP---TMVEEYKAKLAKV 143 (225)
Q Consensus 83 ~~~l~p~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~---~~~~~~~~~l~~~ 143 (225)
.+ +. .+++.+++|+.+....+...+...+..... ...++ ..+ ...+...+++.+.
T Consensus 77 --~l-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 150 (210)
T PRK10387 77 --LL-TG-KRSPAIEEWLRKVFGYLNKLLYPRFAKADLPEFATPSARQYFIDKKEASIG--DFDALLAHTPGLIKEINAD 150 (210)
T ss_pred --cC-CC-cccHHHHHHHHHHHHHhhcchhcccccCCCcccCCHHHHHHHHHhHHhccC--CHHHHHhcCHHHHHHHHHH
Confidence 34 32 367788889887765554332221110000 00001 000 0113557789999
Q ss_pred HHHHHHhhcCCCccccCCccHhhhhhhhHHHHHHhhhhhhhhccCchHHHHHHHHhcChhH
Q 038052 144 LDVYEARLTKSKYLASDSFTLVDMHHLPTINLLMRTQVKQLFNARPRVSAWVADITARPAW 204 (225)
Q Consensus 144 l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~p~L~~~~~~~~~~p~~ 204 (225)
|..+|++|++ +|++|+++|+||+++++.+.++..... .+.+|+|.+|++||.+||.+
T Consensus 151 l~~le~~L~~-~~l~G~~~s~ADi~l~~~l~~~~~~~~---~~~~p~l~~w~~r~~~r~~~ 207 (210)
T PRK10387 151 LRALDPLIVK-PNAVNGELSTDDIHLFPILRNLTLVKG---IEWPPRVADYRDNMSKKTQV 207 (210)
T ss_pred HHHHHHHhcC-ccccCCCCCHHHHHHHHHHhcceeecC---CCCCHHHHHHHHHHHHHhCC
Confidence 9999999987 999999999999999999998876422 23469999999999999875
No 19
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=99.97 E-value=6.3e-30 Score=198.54 Aligned_cols=178 Identities=21% Similarity=0.286 Sum_probs=137.5
Q ss_pred cCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCEEeeehHHHHHHHHHhCCCCCCCCCC
Q 038052 9 AAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQKIFESRAITQYIAMEYPEKGTRLAS 88 (225)
Q Consensus 9 ~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~l~eS~aI~~yL~~~~~~~~~~l~p 88 (225)
...||+|++++++|+++||+|+.+.+++. +++++|.++||.|+||+|+++|.+|+||.+|++||+++++.. .+.+
T Consensus 70 ~g~cp~s~rV~i~L~ekgi~ye~~~vdl~---~~~~~fl~iNP~GkVPvL~~d~~~L~ES~aI~~YL~e~~p~~--~L~~ 144 (265)
T PLN02817 70 LGDCPFCQRVLLTLEEKHLPYDMKLVDLT---NKPEWFLKISPEGKVPVVKLDEKWVADSDVITQALEEKYPDP--PLAT 144 (265)
T ss_pred CCCCcHHHHHHHHHHHcCCCCEEEEeCcC---cCCHHHHhhCCCCCCCEEEECCEEEecHHHHHHHHHHHCCCC--CCCC
Confidence 44599999999999999999999999885 457899999999999999999999999999999999999864 4432
Q ss_pred CCccchHHHHHHHHHhhhcchhHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcC-CCccccCCccHhhh
Q 038052 89 ADKPSSSFLIWKEVEAHQFDPVASKLTWEIVLKPMFGMTIDPTMVEEYKAKLAKVLDVYEARLTK-SKYLASDSFTLVDM 167 (225)
Q Consensus 89 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~-~~~l~G~~~t~aD~ 167 (225)
. .+++.+..++.. .+... +.. .... +...+.+.+.|+.||++|++ ++|++|+++|+||+
T Consensus 145 ~-~era~i~~~l~~-------~~~~~-----~~~---~~~~----~~~~~~l~~~l~~LE~~L~~~g~yl~Gd~~SlADi 204 (265)
T PLN02817 145 P-PEKASVGSKIFS-------TFIGF-----LKS---KDPG----DGTEQALLDELTSFDDYIKENGPFINGEKISAADL 204 (265)
T ss_pred H-HHHHHHHHHHHH-------HHHHH-----hcc---CCcc----hHHHHHHHHHHHHHHHHHhcCCCeeCCCCCCHHHH
Confidence 2 666766654321 11111 110 1111 12235677889999999974 69999999999999
Q ss_pred hhhhHHHHHHhhhh----hhhhccCchHHHHHHHHhcChhHHHHHhhc
Q 038052 168 HHLPTINLLMRTQV----KQLFNARPRVSAWVADITARPAWTKVLAMQ 211 (225)
Q Consensus 168 ~l~~~l~~~~~~~~----~~~~~~~p~L~~~~~~~~~~p~~~~~~~~~ 211 (225)
++++.+..+..... ....+.+|+|.+|++++.++|+|++++...
T Consensus 205 ~l~p~L~~l~~~~~~~~~~~i~~~~P~L~~w~~ri~~rps~~~~~~~~ 252 (265)
T PLN02817 205 SLGPKLYHLEIALGHYKNWSVPDSLPFVKSYMKNIFSMESFVKTRALP 252 (265)
T ss_pred HHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHhcchhHhhcCCCH
Confidence 99999987764311 123578999999999999999999987754
No 20
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.96 E-value=7.9e-29 Score=187.36 Aligned_cols=187 Identities=14% Similarity=0.088 Sum_probs=134.1
Q ss_pred EEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEE-eCCEEeeehHHHHHHHHHhCCCCC
Q 038052 5 KVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALE-HGGQKIFESRAITQYIAMEYPEKG 83 (225)
Q Consensus 5 ~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~-~~~~~l~eS~aI~~yL~~~~~~~~ 83 (225)
+||++..||+|+|+|++|+++|++|+.+.+... ++ ....+.||.|++|+|+ ++|.+++||.+|++||+++++.+
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~--~~--~~~~~~np~g~vP~l~~~~g~~l~es~~I~~yL~~~~~~~- 75 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLND--DE--ETPIRMIGAKQVPILQKDDGRAMPESLDIVAYFDKLDGEP- 75 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCC--cc--hhHHHhcCCCCcceEEeeCCeEeccHHHHHHHHHHhCCCc-
Confidence 689999999999999999999999998766543 22 2346889999999998 88999999999999999999743
Q ss_pred CCCCCCCccchHHHHHHHHHhhhcchhHHHHHHH-------------HHHhcc-CCCCCCH---HHHHHHHHHHHHHHHH
Q 038052 84 TRLASADKPSSSFLIWKEVEAHQFDPVASKLTWE-------------IVLKPM-FGMTIDP---TMVEEYKAKLAKVLDV 146 (225)
Q Consensus 84 ~~l~p~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~-~~~~~~~---~~~~~~~~~l~~~l~~ 146 (225)
.+ +. ..++.+++|+.+....+...+...+.. .+.++. .+.+... ...+...+.+.+.|+.
T Consensus 76 -~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~ 152 (209)
T TIGR02182 76 -LL-TG-KVSPEIEAWLRKVTGYANKLLLPRFAKSDLPEFATQSARKYFTDKKEASAGNFSALLNHTPGLLEEINADLEE 152 (209)
T ss_pred -cC-CC-CChHHHHHHHHHHHHHhhhhhccccccCCCcccCCHHHHHHHHHHHHHhcCCHHHHHccCHHHHHHHHHHHHH
Confidence 23 32 356778888876555543332211100 000000 0000000 0013456778999999
Q ss_pred HHHhhcCCCccccCCccHhhhhhhhHHHHHHhhhhhhhhccCc-hHHHHHHHHhcChhH
Q 038052 147 YEARLTKSKYLASDSFTLVDMHHLPTINLLMRTQVKQLFNARP-RVSAWVADITARPAW 204 (225)
Q Consensus 147 le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~p-~L~~~~~~~~~~p~~ 204 (225)
+|++|++++|+.| ++|+||+++++.+.++...+. . .+| +|.+|++||++++++
T Consensus 153 le~~L~~~~~l~g-~~TiADi~l~~~l~~~~~~~~---~-~~p~~l~~w~~Ri~ar~~~ 206 (209)
T TIGR02182 153 LDKLIDGPNAVNG-ELSEDDILVFPLLRNLTLVAG---I-NWPSRVADYLDNMSKKSKV 206 (209)
T ss_pred HHHHHhCccccCC-CCCHHHHHHHHHhcCeeeecC---C-CCChHHHHHHHHHHHHhCC
Confidence 9999999999954 699999999999988765422 1 356 999999999998865
No 21
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=99.96 E-value=6.7e-28 Score=178.16 Aligned_cols=210 Identities=23% Similarity=0.304 Sum_probs=156.5
Q ss_pred ceEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCEEeeehHHHHHHHHHhCCCC
Q 038052 3 VIKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQKIFESRAITQYIAMEYPEK 82 (225)
Q Consensus 3 ~~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~l~eS~aI~~yL~~~~~~~ 82 (225)
.+.||.++.|-.+||||++++++||+|+...|++..++++.+||.++||.|.||||+++..+|+++.-|+.|+++.+..+
T Consensus 26 ~~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~gevPVl~~g~~II~d~tqIIdYvErtf~ge 105 (325)
T KOG4420|consen 26 SLVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPGGEVPVLIHGDNIISDYTQIIDYVERTFTGE 105 (325)
T ss_pred cceeeecCcccccceeeeehhhcccccceeeccCccccccCchheecCCCCCCceEecCCeecccHHHHHHHHHHhhccc
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred CCCCCCCC--ccchHHHHHHHHHhh--------------hcc-----hhHHHHHHH------------------------
Q 038052 83 GTRLASAD--KPSSSFLIWKEVEAH--------------QFD-----PVASKLTWE------------------------ 117 (225)
Q Consensus 83 ~~~l~p~~--~~~a~~~~~~~~~~~--------------~~~-----~~~~~~~~~------------------------ 117 (225)
..|.|+- .+..++...-...+. .+. +....+...
T Consensus 106 -r~l~pe~~S~~~d~~l~~e~~l~~lpm~~~t~g~~lh~eL~~~s~iP~~~~iR~~~~k~~~~v~~l~~~e~pdla~ay~ 184 (325)
T KOG4420|consen 106 -RVLMPEVGSLQHDRVLQYEELLDALPMDAYTHGCILHPELTTDSMIPKYAEIRRHLAKATTDVMKLDHEEEPDLAEAYL 184 (325)
T ss_pred -ccccccccccccHHHHHHHHHHHhcCcchhhccccccchhhccccCcccHHHHHHHHHHHHHHHHHHhhcCchhhHHHH
Confidence 2466643 333333322221110 000 001100000
Q ss_pred ---HHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcC----CCccccCCccHhhhhhhhHHHHHHhhhhhh---hhcc
Q 038052 118 ---IVLKPMFGMTIDPTMVEEYKAKLAKVLDVYEARLTK----SKYLASDSFTLVDMHHLPTINLLMRTQVKQ---LFNA 187 (225)
Q Consensus 118 ---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~----~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~---~~~~ 187 (225)
+-.....-...+....+.....+.+.|+.+|+.|.+ ..|++|+.+|+||+.+.+.|+++...+... ...+
T Consensus 185 akqkkl~~kl~~hdd~s~lkkild~l~~~Ld~VEteLe~r~~~~~wL~G~efslADVsLg~~LhRL~~Lg~e~~yw~~gs 264 (325)
T KOG4420|consen 185 AKQKKLMAKLLEHDDVSYLKKILDELAMVLDQVETELEKRKLCELWLCGCEFSLADVSLGATLHRLKFLGLEKKYWEDGS 264 (325)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhccccceeeccccchHHHHHHHHHHHHHHHcccHHHhcccCC
Confidence 000000001233334556666777888888888886 589999999999999999999999885432 2358
Q ss_pred CchHHHHHHHHhcChhHHHHHhhccC
Q 038052 188 RPRVSAWVADITARPAWTKVLAMQKV 213 (225)
Q Consensus 188 ~p~L~~~~~~~~~~p~~~~~~~~~~~ 213 (225)
.|||.+|+.|++.|++|++++.....
T Consensus 265 rpnle~Yf~rvrrR~sf~kvlg~~fn 290 (325)
T KOG4420|consen 265 RPNLESYFERVRRRFSFRKVLGDIFN 290 (325)
T ss_pred CccHHHHHHHHHhhhHHHHhhhhHHH
Confidence 99999999999999999999887654
No 22
>PLN02907 glutamate-tRNA ligase
Probab=99.91 E-value=2.6e-23 Score=179.87 Aligned_cols=156 Identities=16% Similarity=0.180 Sum_probs=128.4
Q ss_pred CcceEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEE-eCCEEeeehHHHHHHHHHhC
Q 038052 1 MGVIKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALE-HGGQKIFESRAITQYIAMEY 79 (225)
Q Consensus 1 m~~~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~-~~~~~l~eS~aI~~yL~~~~ 79 (225)
|+ ++||+.+.|+ +.++.++|++.|++|+... .+|.|++|+|+ ++|.+++||.||++||++.+
T Consensus 1 ~~-~kLy~~~~S~-~~~v~~~L~~lgv~~e~~~---------------~~p~GkVPvLv~ddG~~L~ES~AIl~YLa~~~ 63 (722)
T PLN02907 1 ME-AKLSFPPDSP-PLAVIAAAKVAGVPLTIDP---------------SLKSGSAPTLLFSSGEKLTGTNVLLRYIARSA 63 (722)
T ss_pred Ce-EEEEECCCCC-hHHHHHHHHHcCCCcEEee---------------cCCCCCCcEEEECCCCEEECHHHHHHHHHHhC
Confidence 67 8999999775 6689999999999999863 26899999999 58899999999999999999
Q ss_pred CCCCCCCCCCC-ccchHHHHHHHHHhhhcchhHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 038052 80 PEKGTRLASAD-KPSSSFLIWKEVEAHQFDPVASKLTWEIVLKPMFGMTIDPTMVEEYKAKLAKVLDVYEARLTKSKYLA 158 (225)
Q Consensus 80 ~~~~~~l~p~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~ 158 (225)
+.. .|+|.+ .+++++++|+.+...... ...+...++.||++|++++|++
T Consensus 64 p~~--~L~p~d~~erAqV~qWL~~~~~~~~----------------------------~~~l~~~L~~LE~~L~~rtYLv 113 (722)
T PLN02907 64 SLP--GFYGQDAFESSQVDEWLDYAPTFSS----------------------------GSEFENACEYVDGYLASRTFLV 113 (722)
T ss_pred CCc--CCCCCCHHHHHHHHHHHHHHhhccc----------------------------HHHHHHHHHHHHHHhccCCeec
Confidence 754 699988 999999999987643110 0134567899999999999999
Q ss_pred cCCccHhhhhhhhHHHHHHhh-hhhhhhccCchHHHHHHHHhcChh
Q 038052 159 SDSFTLVDMHHLPTINLLMRT-QVKQLFNARPRVSAWVADITARPA 203 (225)
Q Consensus 159 G~~~t~aD~~l~~~l~~~~~~-~~~~~~~~~p~L~~~~~~~~~~p~ 203 (225)
|+++|+||+++++.+...... ......+.+|+|.+|++++.++|+
T Consensus 114 Gd~lTLADIaL~~~L~~~~~~~~~~~~~~~yPnL~RW~erI~arPs 159 (722)
T PLN02907 114 GYSLTIADIAIWSGLAGSGQRWESLRKSKKYQNLVRWFNSISAEYS 159 (722)
T ss_pred CCCCCHHHHHHHHHHHhhhhhhhcccccccCHHHHHHHHHHHhCCC
Confidence 999999999999988655211 111235789999999999999999
No 23
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=99.90 E-value=7.8e-23 Score=147.29 Aligned_cols=184 Identities=19% Similarity=0.259 Sum_probs=143.3
Q ss_pred cCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCEEeeehHHHHHHHHHhCCCCCCCCCC
Q 038052 9 AAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQKIFESRAITQYIAMEYPEKGTRLAS 88 (225)
Q Consensus 9 ~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~l~eS~aI~~yL~~~~~~~~~~l~p 88 (225)
...||+||++.+.|+.+|++|.++.|++. .++++|..+.|.|++|+|..|+..++||..|-++|++.++.+ . +|
T Consensus 18 ~Gdcpf~qr~~m~L~~k~~~f~vttVd~~---~kp~~f~~~sp~~~~P~l~~d~~~~tDs~~Ie~~Lee~l~~p--~-~~ 91 (221)
T KOG1422|consen 18 LGDCPFCQRLFMTLELKGVPFKVTTVDLS---RKPEWFLDISPGGKPPVLKFDEKWVTDSDKIEEFLEEKLPPP--K-LP 91 (221)
T ss_pred CCCChhHHHHHHHHHHcCCCceEEEeecC---CCcHHHHhhCCCCCCCeEEeCCceeccHHHHHHHHHHhcCCC--C-Cc
Confidence 34799999999999999999999999996 578999999999999999999999999999999999999865 2 22
Q ss_pred CCccchHHHHHHHHHhhhcchhHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcC---CCccccCCccHh
Q 038052 89 ADKPSSSFLIWKEVEAHQFDPVASKLTWEIVLKPMFGMTIDPTMVEEYKAKLAKVLDVYEARLTK---SKYLASDSFTLV 165 (225)
Q Consensus 89 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~---~~~l~G~~~t~a 165 (225)
. .. ..-.+.....+...+..++ ....++..+...+.+...|..|+.+|+. ++|+.||++|.|
T Consensus 92 ~-~~----~~E~asag~diF~kF~~fi----------~ksk~~~n~~~e~~Ll~~L~~Ld~yL~sp~~~~Fl~Gd~lt~a 156 (221)
T KOG1422|consen 92 T-LA----PPESASAGSDIFAKFSAFI----------KKSKDAANDGLEKALLKELEKLDDYLKSPSRRKFLDGDKLTLA 156 (221)
T ss_pred c-cC----CHHHHhhHHHHHHHHHHHH----------hCchhhccchHHHHHHHHHHHHHHHhcCccCCccccCCeeeee
Confidence 1 00 1111111122222222222 1223334455667788888999999985 699999999999
Q ss_pred hhhhhhHHHHHHhh----hhhhhhccCchHHHHHHHHhcChhHHHHHhhccC
Q 038052 166 DMHHLPTINLLMRT----QVKQLFNARPRVSAWVADITARPAWTKVLAMQKV 213 (225)
Q Consensus 166 D~~l~~~l~~~~~~----~~~~~~~~~p~L~~~~~~~~~~p~~~~~~~~~~~ 213 (225)
|+.+.+-|+.+..+ ....+.+..+.+++|++.+.++.+|..++.+...
T Consensus 157 DcsLlPKL~~i~va~k~yk~~~IP~~lt~V~rYl~~~ya~d~F~~tcp~d~e 208 (221)
T KOG1422|consen 157 DCSLLPKLHHIKVAAKHYKNFEIPASLTGVWRYLKNAYARDEFTNTCPADQE 208 (221)
T ss_pred hhhhchhHHHHHHHHHHhcCCCCchhhhHHHHHHHHHHhHHHhhcCCchHHH
Confidence 99999999999887 2345678899999999999999999888776654
No 24
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.87 E-value=1.1e-21 Score=123.17 Aligned_cols=73 Identities=30% Similarity=0.441 Sum_probs=69.4
Q ss_pred eEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCEEeeehHHHHHHHH
Q 038052 4 IKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQKIFESRAITQYIA 76 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~l~eS~aI~~yL~ 76 (225)
++||+++.|++|+++|++|+++|++|+.+.+++..++++++++.++||.|+||+|+++|.+++||.||++||+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~~g~~l~Es~aI~~yLe 73 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIHGDNIICDPTQIIDYLE 73 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 4899999999999999999999999999999988877888999999999999999999999999999999985
No 25
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.85 E-value=6.7e-21 Score=120.34 Aligned_cols=74 Identities=30% Similarity=0.413 Sum_probs=70.1
Q ss_pred eEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCEEeeehHHHHHHHHH
Q 038052 4 IKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQKIFESRAITQYIAM 77 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~l~eS~aI~~yL~~ 77 (225)
++||+++.||+|++++++|+++|++|+.+.+++..++++.+++.+.||.|++|+|+++|.+++||.||++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVDNGFVLWESHAILIYLVE 74 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEECCEEEEcHHHHHHHHhC
Confidence 68999999999999999999999999999999887777889999999999999999999999999999999974
No 26
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.84 E-value=1.9e-20 Score=118.79 Aligned_cols=76 Identities=33% Similarity=0.580 Sum_probs=71.3
Q ss_pred eEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCEEeeehHHHHHHHHHhC
Q 038052 4 IKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQKIFESRAITQYIAMEY 79 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~l~eS~aI~~yL~~~~ 79 (225)
++||+++.|++|++++++|+++|++|+.+.++...++...+++.+.||.|++|+|+++|.+++||.||++||++++
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVDGDFTLAESVAILRYLARKF 76 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 5899999999999999999999999999999988777777899999999999999999999999999999999864
No 27
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.84 E-value=2.3e-20 Score=118.53 Aligned_cols=75 Identities=57% Similarity=0.945 Sum_probs=70.6
Q ss_pred eEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCEEeeehHHHHHHHHHh
Q 038052 4 IKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQKIFESRAITQYIAME 78 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~l~eS~aI~~yL~~~ 78 (225)
++||+++.||+|+++|++|+++|++|+.+.++...++++++++.+.||.|++|+|+++|.+++||.||++||+++
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~~g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALEDGDLKLFESRAITRYLAEK 76 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHhhC
Confidence 799999999999999999999999999999998777777889999999999999999999999999999999863
No 28
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.83 E-value=3.4e-20 Score=119.16 Aligned_cols=77 Identities=35% Similarity=0.556 Sum_probs=71.4
Q ss_pred ceEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeC---CEEeeehHHHHHHHHHhC
Q 038052 3 VIKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHG---GQKIFESRAITQYIAMEY 79 (225)
Q Consensus 3 ~~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~---~~~l~eS~aI~~yL~~~~ 79 (225)
+++||+++. |+|++++++|+++|++|+.+.+++..++++++++.+.||.|++|+|+++ |.+++||.+|++||++++
T Consensus 1 ~~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~~~~ 79 (81)
T cd03048 1 MITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYLAEKY 79 (81)
T ss_pred CeEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHHHHHh
Confidence 489999985 9999999999999999999999987767788999999999999999986 899999999999999998
Q ss_pred C
Q 038052 80 P 80 (225)
Q Consensus 80 ~ 80 (225)
+
T Consensus 80 ~ 80 (81)
T cd03048 80 D 80 (81)
T ss_pred C
Confidence 6
No 29
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.83 E-value=2.9e-20 Score=117.57 Aligned_cols=74 Identities=38% Similarity=0.604 Sum_probs=69.1
Q ss_pred EeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCEEeeehHHHHHHHHHhCCCC
Q 038052 6 VHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQKIFESRAITQYIAMEYPEK 82 (225)
Q Consensus 6 Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~l~eS~aI~~yL~~~~~~~ 82 (225)
||+++.||+|+|+|++|+++||+|+.+.++... +.+++...||.|+||+|++||.+++||.+|++||++.++..
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~---~~~~~~~~~p~~~vPvL~~~g~~l~dS~~I~~yL~~~~~~~ 74 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEE---KRPEFLKLNPKGKVPVLVDDGEVLTDSAAIIEYLEERYPGP 74 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTS---TSHHHHHHSTTSBSSEEEETTEEEESHHHHHHHHHHHSTSS
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCccc---chhHHHhhcccccceEEEECCEEEeCHHHHHHHHHHHcCCC
Confidence 899999999999999999999999999999753 37899999999999999999999999999999999999853
No 30
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.83 E-value=3.8e-20 Score=117.58 Aligned_cols=75 Identities=28% Similarity=0.355 Sum_probs=66.4
Q ss_pred ceEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEe--CCEEeeehHHHHHHHHHhC
Q 038052 3 VIKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEH--GGQKIFESRAITQYIAMEY 79 (225)
Q Consensus 3 ~~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~--~~~~l~eS~aI~~yL~~~~ 79 (225)
|++||+++.||+|+|++++|+++||+|+.+.++. +++..+++...||.|++|+|++ +|.+++||.+|++||++++
T Consensus 1 ~~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~--~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 1 PLELYEFEGSPFCRLVREVLTELELDVILYPCPK--GSPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred CceEecCCCCchHHHHHHHHHHcCCcEEEEECCC--ChHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 4899999999999999999999999999987753 3345678999999999999996 4689999999999999874
No 31
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.82 E-value=5e-20 Score=116.03 Aligned_cols=73 Identities=37% Similarity=0.570 Sum_probs=68.9
Q ss_pred eEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCEEeeehHHHHHHHH
Q 038052 4 IKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQKIFESRAITQYIA 76 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~l~eS~aI~~yL~ 76 (225)
++||+++.||+|++++++|+++|++|+.+.+++..++++++++.+.||.|++|+|+++|.+++||.||++||+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVLELDGRVLAESNAILVYLA 73 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999999987777788999999999999999999999999999999984
No 32
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.82 E-value=8.6e-20 Score=114.86 Aligned_cols=73 Identities=33% Similarity=0.503 Sum_probs=67.8
Q ss_pred eEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCEEeeehHHHHHHHH
Q 038052 4 IKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQKIFESRAITQYIA 76 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~l~eS~aI~~yL~ 76 (225)
++||+++.|++++++|++|+++|++|+.+.++...++++.+++.+.||.|++|+|+++|..++||.||++||+
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLEDGDFVLWESNAILRYLA 73 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCCCCCEEEECCEEEECHHHHHHHhC
Confidence 5899999999999999999999999999998876656677899999999999999999999999999999984
No 33
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.82 E-value=1.4e-19 Score=113.96 Aligned_cols=73 Identities=29% Similarity=0.476 Sum_probs=67.8
Q ss_pred eEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCEEeeehHHHHHHHHHhC
Q 038052 4 IKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQKIFESRAITQYIAMEY 79 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~l~eS~aI~~yL~~~~ 79 (225)
|+||+.+.||+|++++++|+++|++|+.+.++.. ++.+++++.||.|++|+|+++|..++||.+|++||++++
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPD---NPPEDLAELNPYGTVPTLVDRDLVLYESRIIMEYLDERF 73 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCC---CCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 6899999999999999999999999999998864 456899999999999999999999999999999999874
No 34
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.81 E-value=1.8e-19 Score=114.58 Aligned_cols=76 Identities=38% Similarity=0.488 Sum_probs=69.9
Q ss_pred eEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeC-CEEeeehHHHHHHHHHhCC
Q 038052 4 IKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHG-GQKIFESRAITQYIAMEYP 80 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~-~~~l~eS~aI~~yL~~~~~ 80 (225)
++||+++.| +++++|++|+++|++|+.+.++...++++.+++.+.||.|++|+|+++ |.+++||.+|++||++.+|
T Consensus 1 ~~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI~~yL~~~~p 77 (77)
T cd03057 1 MKLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLDDGEVLTESAAILQYLADLHP 77 (77)
T ss_pred CEEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEECCCcEEEcHHHHHHHHHHhCc
Confidence 589999966 689999999999999999999988777888999999999999999976 8999999999999999875
No 35
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.81 E-value=2.7e-19 Score=113.59 Aligned_cols=76 Identities=34% Similarity=0.510 Sum_probs=70.0
Q ss_pred eEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCEEeeehHHHHHHHHHhCC
Q 038052 4 IKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQKIFESRAITQYIAMEYP 80 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~l~eS~aI~~yL~~~~~ 80 (225)
++||+++. +++++++++|+++|++|+.+.++...++++.+++.+.||.|++|+|+++|.+++||.||++||+++++
T Consensus 1 ~~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 1 ITLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLVDGDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred CEEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHHHHhCc
Confidence 58999885 68999999999999999999999876667789999999999999999999999999999999999874
No 36
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.81 E-value=8.9e-20 Score=114.68 Aligned_cols=72 Identities=18% Similarity=0.228 Sum_probs=65.9
Q ss_pred ceEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCEEeeehHHHHHHHHH
Q 038052 3 VIKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQKIFESRAITQYIAM 77 (225)
Q Consensus 3 ~~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~l~eS~aI~~yL~~ 77 (225)
+++||+++.|++|+++|++|+++|++|+.+.++.. ++.+++...||.|++|+|+++|.+++||.||++||++
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~---~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~ 72 (73)
T cd03076 1 PYTLTYFPVRGRAEAIRLLLADQGISWEEERVTYE---EWQESLKPKMLFGQLPCFKDGDLTLVQSNAILRHLGR 72 (73)
T ss_pred CcEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHH---HhhhhhhccCCCCCCCEEEECCEEEEcHHHHHHHHhc
Confidence 47999999999999999999999999999999873 3345788999999999999999999999999999985
No 37
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.81 E-value=2.6e-19 Score=113.02 Aligned_cols=73 Identities=36% Similarity=0.514 Sum_probs=67.0
Q ss_pred eEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCC-CCCCeEEeCCEEeeehHHHHHHHHHhC
Q 038052 4 IKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPF-GQVPALEHGGQKIFESRAITQYIAMEY 79 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~-g~vP~L~~~~~~l~eS~aI~~yL~~~~ 79 (225)
|+||+++.||+|+++|++|+++|++|+.+.++.. ++++++.+.||. |++|+|+++|.+++||.+|++||++.+
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~---~~~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLG---NKSELLLASNPVHKKIPVLLHNGKPICESLIIVEYIDEAW 74 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcc---cCCHHHHHhCCCCCCCCEEEECCEEeehHHHHHHHHHhhC
Confidence 6899999999999999999999999999988774 456889999995 999999999999999999999999864
No 38
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.81 E-value=2.2e-19 Score=113.65 Aligned_cols=73 Identities=40% Similarity=0.589 Sum_probs=64.4
Q ss_pred EEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCC-CCCCeEEeC-CEEeeehHHHHHHHHH
Q 038052 5 KVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPF-GQVPALEHG-GQKIFESRAITQYIAM 77 (225)
Q Consensus 5 ~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~-g~vP~L~~~-~~~l~eS~aI~~yL~~ 77 (225)
+|++++..+++.++|++|+++|++|+.+.+++..++++++++.+.||. |++|+|+++ |.+++||.||++||++
T Consensus 2 ~l~l~~~~~~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 2 TLTLYNGRGRSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILRYLAR 76 (76)
T ss_dssp EEEEESSSTTTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHHHhCC
Confidence 455555555999999999999999999999998888888999999999 999999998 9999999999999985
No 39
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.80 E-value=2.4e-19 Score=112.86 Aligned_cols=73 Identities=37% Similarity=0.529 Sum_probs=68.8
Q ss_pred eEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCEEeeehHHHHHHHH
Q 038052 4 IKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQKIFESRAITQYIA 76 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~l~eS~aI~~yL~ 76 (225)
|+||++..|++|+++|++|+++|++|+.+.+++..++++.+++.+.||.|++|+|+++|.+++||.||++||+
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVIDGLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999999987777778999999999999999999999999999999985
No 40
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.80 E-value=2.9e-19 Score=115.32 Aligned_cols=71 Identities=25% Similarity=0.318 Sum_probs=65.5
Q ss_pred cCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCEEeeehHHHHHHHHHhCCCC
Q 038052 9 AAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQKIFESRAITQYIAMEYPEK 82 (225)
Q Consensus 9 ~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~l~eS~aI~~yL~~~~~~~ 82 (225)
...||||+++|++|+++||+|+.+.+++. +++++|.++||.|++|+|+++|.+++||.+|++||++.++..
T Consensus 19 ~g~cpf~~rvrl~L~eKgi~ye~~~vd~~---~~p~~~~~~nP~g~vPvL~~~~~~i~eS~~I~eYLde~~~~~ 89 (91)
T cd03061 19 IGNCPFCQRLFMVLWLKGVVFNVTTVDMK---RKPEDLKDLAPGTQPPFLLYNGEVKTDNNKIEEFLEETLCPP 89 (91)
T ss_pred CCCChhHHHHHHHHHHCCCceEEEEeCCC---CCCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHHHccCC
Confidence 35799999999999999999999999986 457999999999999999999999999999999999998743
No 41
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=99.80 E-value=1.6e-18 Score=129.40 Aligned_cols=184 Identities=17% Similarity=0.199 Sum_probs=131.7
Q ss_pred eEEeccC-------CChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCEEeeehHHHHHHHH
Q 038052 4 IKVHGAA-------MSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQKIFESRAITQYIA 76 (225)
Q Consensus 4 ~~Ly~~~-------~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~l~eS~aI~~yL~ 76 (225)
+-||.|+ .||||+|+..+|+..+|||+.+.-.+. ..++.|++|.++-||..+.||.-|..+|.
T Consensus 46 VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~~~----------~rSr~G~lPFIELNGe~iaDS~~I~~~L~ 115 (281)
T KOG4244|consen 46 VYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCSLK----------RRSRNGTLPFIELNGEHIADSDLIEDRLR 115 (281)
T ss_pred EEEEeccccCCCCCCChHHHHHHHHHHHhCCCceeccccce----------eeccCCCcceEEeCCeeccccHHHHHHHH
Confidence 4466665 899999999999999999998765442 35889999999999999999999999999
Q ss_pred HhCCCCCCCCCCCCccchHHHHHHHHHhhhcch----------------------------hHHHHHHHHHH-----hcc
Q 038052 77 MEYPEKGTRLASADKPSSSFLIWKEVEAHQFDP----------------------------VASKLTWEIVL-----KPM 123 (225)
Q Consensus 77 ~~~~~~~~~l~p~~~~~a~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~-----~~~ 123 (225)
+.+.-+ ..+|. .++++........+..+.- .+..+++...+ +..
T Consensus 116 ~hf~~~--~~L~~-e~~a~s~Al~rm~dnhL~~~l~y~k~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~f~~kv~~r~ 192 (281)
T KOG4244|consen 116 KHFKIP--DDLSA-EQRAQSRALSRMADNHLFWILLYYKGADDAWLNTDRKLIGLPGFLFPLLLPLFWKAIFGKKVYKRS 192 (281)
T ss_pred HHcCCC--CCCCH-HHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHHHh
Confidence 998765 32444 4555544444433322211 12222211111 111
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCccHhhhhhhhHHHHHHhh---h-hhhhhccCchHHHHHHHHh
Q 038052 124 FGMTIDPTMVEEYKAKLAKVLDVYEARLTKSKYLASDSFTLVDMHHLPTINLLMRT---Q-VKQLFNARPRVSAWVADIT 199 (225)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~---~-~~~~~~~~p~L~~~~~~~~ 199 (225)
-|. ...-..++..+.+.+.|+.++..|++++|++|+++|-+|+.+|+.|..+.+. . ..-+.+++|||.+|++|++
T Consensus 193 ~g~-IG~f~~~Ei~ell~rDlr~i~~~Lg~KkflfGdkit~~DatvFgqLa~v~YP~~~~i~d~le~d~p~l~eYceRIr 271 (281)
T KOG4244|consen 193 TGA-IGDFESAEIDELLHRDLRAISDYLGDKKFLFGDKITPADATVFGQLAQVYYPFRSHISDLLEGDFPNLLEYCERIR 271 (281)
T ss_pred hcc-ccCcCHHHHHHHHHHHHHHHHHHhCCCccccCCCCCcceeeehhhhhheeccCCCcHHHHHhhhchHHHHHHHHHH
Confidence 111 2222334577888999999999999999999999999999999999988774 1 1124568999999999998
Q ss_pred cC
Q 038052 200 AR 201 (225)
Q Consensus 200 ~~ 201 (225)
+.
T Consensus 272 ~~ 273 (281)
T KOG4244|consen 272 KE 273 (281)
T ss_pred HH
Confidence 64
No 42
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.80 E-value=2.1e-19 Score=113.42 Aligned_cols=73 Identities=37% Similarity=0.594 Sum_probs=67.5
Q ss_pred eEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEE-eCCEEeeehHHHHHHHH
Q 038052 4 IKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALE-HGGQKIFESRAITQYIA 76 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~-~~~~~l~eS~aI~~yL~ 76 (225)
++||+++.||+|+++|++|+++|++|+.+.++...+++..+++.+.||.|++|+|+ ++|..++||.||++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELDDGTVITESVAICRYLE 74 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEEeCCCCEEecHHHHHHHhC
Confidence 58999999999999999999999999999999876666778899999999999998 57889999999999985
No 43
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.80 E-value=3e-19 Score=112.95 Aligned_cols=72 Identities=26% Similarity=0.394 Sum_probs=67.1
Q ss_pred EEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEe-CCEEeeehHHHHHHHHH
Q 038052 5 KVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEH-GGQKIFESRAITQYIAM 77 (225)
Q Consensus 5 ~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~-~~~~l~eS~aI~~yL~~ 77 (225)
+||+++.|++|++++++|+++|++|+.+.++...+ ++++++.++||.|++|+|++ +|.+++||.||++||++
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~-~~~~~~~~~nP~~~vP~L~~~~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKE-NKTPEFLKKFPLGKVPAFEGADGFCLFESNAIAYYVAN 74 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccc-cCCHHHHHhCCCCCCCEEEcCCCCEEeeHHHHHHHHhh
Confidence 79999999999999999999999999999998654 77899999999999999996 58999999999999986
No 44
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.78 E-value=4.8e-19 Score=111.15 Aligned_cols=72 Identities=25% Similarity=0.338 Sum_probs=64.7
Q ss_pred eEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCEEeeehHHHHHHHHH
Q 038052 4 IKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQKIFESRAITQYIAM 77 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~l~eS~aI~~yL~~ 77 (225)
++||+++.|++|+++|++|+++|++|+.+.++...+. .+++...||.|++|+|+++|.+++||.||++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~--~~~~~~~~p~~~vP~L~~~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEWP--ELDLKPTLPFGQLPVLEIDGKKLTQSNAILRYLAR 72 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHhh--hhhhccCCcCCCCCEEEECCEEEEecHHHHHHhhC
Confidence 5899999999999999999999999999998875432 34588899999999999999999999999999974
No 45
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.78 E-value=1.1e-18 Score=112.09 Aligned_cols=76 Identities=20% Similarity=0.173 Sum_probs=65.4
Q ss_pred eEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCC-chhHhh-----hCCCCCCCeEEeCCEEeeehHHHHHHHHH
Q 038052 4 IKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHK-KEAYLS-----LNPFGQVPALEHGGQKIFESRAITQYIAM 77 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~-~~~~~~-----~~P~g~vP~L~~~~~~l~eS~aI~~yL~~ 77 (225)
.+|||+..++.|+++|++|+++||+|+.+.+++..+++. .+++.. .+|+|+||+|++||.+++||.||++||++
T Consensus 1 ~~l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~YLa~ 80 (82)
T cd03075 1 PTLGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILRYIAR 80 (82)
T ss_pred CEEEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHHHHhh
Confidence 379999999999999999999999999999998765543 344442 23999999999999999999999999997
Q ss_pred hC
Q 038052 78 EY 79 (225)
Q Consensus 78 ~~ 79 (225)
++
T Consensus 81 ~~ 82 (82)
T cd03075 81 KH 82 (82)
T ss_pred cC
Confidence 64
No 46
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.78 E-value=1.3e-18 Score=108.80 Aligned_cols=69 Identities=25% Similarity=0.263 Sum_probs=63.4
Q ss_pred eEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEe-CCEEeeehHHHHHHH
Q 038052 4 IKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEH-GGQKIFESRAITQYI 75 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~-~~~~l~eS~aI~~yL 75 (225)
++||+++.||+|+|++++|+++|++|+.+.+++. ++++++.+.||.|++|+|++ ||..++||.+|++|+
T Consensus 1 ~~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~---~~~~~~~~~np~~~vP~L~~~~g~~l~eS~aI~~y~ 70 (71)
T cd03060 1 PILYSFRRCPYAMRARMALLLAGITVELREVELK---NKPAEMLAASPKGTVPVLVLGNGTVIEESLDIMRWA 70 (71)
T ss_pred CEEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCC---CCCHHHHHHCCCCCCCEEEECCCcEEecHHHHHHhh
Confidence 3799999999999999999999999999999885 34588999999999999997 499999999999996
No 47
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.76 E-value=2.2e-18 Score=107.80 Aligned_cols=70 Identities=19% Similarity=0.133 Sum_probs=61.0
Q ss_pred eEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeC-CEEeeehHHHHHHHHH
Q 038052 4 IKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHG-GQKIFESRAITQYIAM 77 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~-~~~l~eS~aI~~yL~~ 77 (225)
|+||+++.||+|+|+|++|+++|++|+.+.++... .....+.+|.+++|+|+++ |.+++||.+|++||++
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~----~~~~~~~~~~~~vP~L~~~~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDD----EATPIRMIGAKQVPILEKDDGSFMAESLDIVAFIDE 71 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCc----hHHHHHhcCCCccCEEEeCCCeEeehHHHHHHHHhC
Confidence 57999999999999999999999999998887532 1344578999999999975 8999999999999974
No 48
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.75 E-value=5.1e-18 Score=109.69 Aligned_cols=70 Identities=29% Similarity=0.405 Sum_probs=61.9
Q ss_pred CCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeC-CEEeeehHHHHHHHHHhCC
Q 038052 10 AMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHG-GQKIFESRAITQYIAMEYP 80 (225)
Q Consensus 10 ~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~-~~~l~eS~aI~~yL~~~~~ 80 (225)
+.||+|+|+|++|+++|++|+.+.+++..++...+++ +.||.|++|+|+++ |.+++||.+|++||+++++
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~~~vP~L~~~~~~~l~eS~aI~~yL~~~~p 84 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGFYTVPVIVDGSGEVIGDSFAIAEYLEEAYP 84 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCCceeCeEEECCCCEEeCHHHHHHHHHHhCc
Confidence 6799999999999999999999999876554444555 78999999999988 8999999999999999874
No 49
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.75 E-value=5.3e-18 Score=106.67 Aligned_cols=70 Identities=30% Similarity=0.486 Sum_probs=63.8
Q ss_pred eEEeccCCChhhHHHHHHHHh--cCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEE-eCCEEeeehHHHHHHHH
Q 038052 4 IKVHGAAMSTAAQRVFTCLYE--KELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALE-HGGQKIFESRAITQYIA 76 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L~~--~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~-~~~~~l~eS~aI~~yL~ 76 (225)
++||+++.||+|+++|++|++ +|++|+.+.++.. .+.+++...||.|++|+|+ ++|.+++||.||++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~---~~~~~~~~~~p~~~vP~l~~~~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPW---SDDESLLAVNPLGKIPALVLDDGEALFDSRVICEYLD 73 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcc---cCChHHHHhCCCCCCCEEEECCCCEEECHHHHHhhhC
Confidence 589999999999999999999 8999999998863 4568899999999999998 58899999999999985
No 50
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.75 E-value=6.6e-18 Score=105.10 Aligned_cols=68 Identities=41% Similarity=0.573 Sum_probs=58.5
Q ss_pred CChhhHHHHHHHHhcCCcceEEeccC-CCCCCCchhHhhhCCCCCCCeEEe-CCEEeeehHHHHHHHHHh
Q 038052 11 MSTAAQRVFTCLYEKELNFEFVPVDM-ASGEHKKEAYLSLNPFGQVPALEH-GGQKIFESRAITQYIAME 78 (225)
Q Consensus 11 ~s~~~~~~r~~L~~~gi~y~~~~v~~-~~~~~~~~~~~~~~P~g~vP~L~~-~~~~l~eS~aI~~yL~~~ 78 (225)
.||||+|++++|+++|++|+...+.. ..+..+++++.+.||.|+||+|++ +|.++.||.+|++||+++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILEYLEEQ 70 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHHHHHHT
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHHHHhcC
Confidence 49999999999999999999988844 334466789999999999999996 899999999999999974
No 51
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.75 E-value=9.7e-18 Score=105.96 Aligned_cols=68 Identities=25% Similarity=0.304 Sum_probs=61.7
Q ss_pred ceEEeccC-------CChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCEEeeehHHHHHHH
Q 038052 3 VIKVHGAA-------MSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQKIFESRAITQYI 75 (225)
Q Consensus 3 ~~~Ly~~~-------~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~l~eS~aI~~yL 75 (225)
+++||+++ .||+|+|++++|+++|++|+.+.++.. ..||.|++|+|+++|.+++||.+|++||
T Consensus 1 m~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~~----------~~~p~g~vPvl~~~g~~l~eS~~I~~yL 70 (75)
T cd03080 1 MITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGLA----------KRSPKGKLPFIELNGEKIADSELIIDHL 70 (75)
T ss_pred CEEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCcc----------cCCCCCCCCEEEECCEEEcCHHHHHHHH
Confidence 47999998 689999999999999999999887652 4799999999999999999999999999
Q ss_pred HHhCC
Q 038052 76 AMEYP 80 (225)
Q Consensus 76 ~~~~~ 80 (225)
+++++
T Consensus 71 ~~~~~ 75 (75)
T cd03080 71 EEKYG 75 (75)
T ss_pred HHHcC
Confidence 99874
No 52
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.75 E-value=1e-17 Score=106.81 Aligned_cols=72 Identities=28% Similarity=0.263 Sum_probs=62.4
Q ss_pred ceEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhh-----hCCCCCCCeEEeCCEEeeehHHHHHHHHH
Q 038052 3 VIKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLS-----LNPFGQVPALEHGGQKIFESRAITQYIAM 77 (225)
Q Consensus 3 ~~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~-----~~P~g~vP~L~~~~~~l~eS~aI~~yL~~ 77 (225)
+++||+++.|++|++++++|+++|++|+.+.++.. +++.+ ..|+|++|+|++||.+++||.||++||++
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~------~~~~~~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~YL~~ 74 (79)
T cd03077 1 KPVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESA------EDLEKLKKDGSLMFQQVPMVEIDGMKLVQTRAILNYIAG 74 (79)
T ss_pred CCEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccH------HHHHhhccccCCCCCCCCEEEECCEEEeeHHHHHHHHHH
Confidence 36899999999999999999999999999988753 22222 24699999999999999999999999999
Q ss_pred hCC
Q 038052 78 EYP 80 (225)
Q Consensus 78 ~~~ 80 (225)
+++
T Consensus 75 ~~~ 77 (79)
T cd03077 75 KYN 77 (79)
T ss_pred HcC
Confidence 875
No 53
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.75 E-value=7.9e-18 Score=109.86 Aligned_cols=71 Identities=31% Similarity=0.531 Sum_probs=65.1
Q ss_pred ceEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeC-CEEeeehHHHHHHHH
Q 038052 3 VIKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHG-GQKIFESRAITQYIA 76 (225)
Q Consensus 3 ~~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~-~~~l~eS~aI~~yL~ 76 (225)
+++||+++.||+|++++++|+++|++|+.+.++... ..+++.+.||.|++|+|+++ |.+++||.||++||+
T Consensus 18 ~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~---~~~~~~~~np~~~vPvL~~~~g~~l~eS~aI~~yLe 89 (89)
T cd03055 18 IIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKD---KPDWFLEKNPQGKVPALEIDEGKVVYESLIICEYLD 89 (89)
T ss_pred cEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCC---CcHHHHhhCCCCCcCEEEECCCCEEECHHHHHHhhC
Confidence 599999999999999999999999999999988753 34778999999999999976 899999999999985
No 54
>cd03187 GST_C_Phi GST_C family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes a
Probab=99.74 E-value=5.9e-17 Score=111.52 Aligned_cols=117 Identities=59% Similarity=0.964 Sum_probs=93.9
Q ss_pred cchHHHHHHHHHhhhcchhHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCccHhhhhhhh
Q 038052 92 PSSSFLIWKEVEAHQFDPVASKLTWEIVLKPMFGMTIDPTMVEEYKAKLAKVLDVYEARLTKSKYLASDSFTLVDMHHLP 171 (225)
Q Consensus 92 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~ 171 (225)
+++++++|+.+....+...+..........+..+...++...+...+++.+.++.||++|++++|++|+++|+|||++++
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~ 81 (118)
T cd03187 2 ERAIVEQWLEVESHQFDPPASALAFELVFKPMLGLPTDEAVVEENEEKLKKVLDVYEARLSKSKYLAGDSFTLADLSHLP 81 (118)
T ss_pred chHHHHHHHHHHHhhcchhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHcccCcccCCCCccHHHHHHHH
Confidence 67889999999888888776655444444443344556666777888999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhccCchHHHHHHHHhcChhHHHHH
Q 038052 172 TINLLMRTQVKQLFNARPRVSAWVADITARPAWTKVL 208 (225)
Q Consensus 172 ~l~~~~~~~~~~~~~~~p~L~~~~~~~~~~p~~~~~~ 208 (225)
.+.++...+.....+.+|+|.+|++++.++|++++++
T Consensus 82 ~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 118 (118)
T cd03187 82 YLQYLMATPFAKLFDSRPHVKAWWEDISARPAWKKVL 118 (118)
T ss_pred HHHHHHHccchhhhhcCchHHHHHHHHHhCHHHHhhC
Confidence 9888764322234678999999999999999998763
No 55
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=99.74 E-value=4.7e-17 Score=122.32 Aligned_cols=194 Identities=13% Similarity=0.191 Sum_probs=131.8
Q ss_pred ceEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCEEeeehHHHHHHHHHhCCCC
Q 038052 3 VIKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQKIFESRAITQYIAMEYPEK 82 (225)
Q Consensus 3 ~~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~l~eS~aI~~yL~~~~~~~ 82 (225)
.++||.+..||||-|||.+|.+.||||++++|++... .-+.-+-..+||+|...|+...||.+|+.-|+.-...+
T Consensus 90 ~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~r-----~eIk~SsykKVPil~~~Geqm~dSsvIIs~laTyLq~~ 164 (370)
T KOG3029|consen 90 DLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVLR-----QEIKWSSYKKVPILLIRGEQMVDSSVIISLLATYLQDK 164 (370)
T ss_pred eEEEEeeccCchHHHHHHHHhhcCCceEEEEecchhh-----hhccccccccccEEEeccceechhHHHHHHHHHHhccC
Confidence 5899999999999999999999999999999998642 22344678999999988888999999998874422100
Q ss_pred C------CCCCC-----------------------------CC-ccchHHHHHHHHHhhhcchhHHHHHHHHHHhcc---
Q 038052 83 G------TRLAS-----------------------------AD-KPSSSFLIWKEVEAHQFDPVASKLTWEIVLKPM--- 123 (225)
Q Consensus 83 ~------~~l~p-----------------------------~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 123 (225)
+ -.++| .+ +.+...+.|..|.++.+.-.+++..+.+.-...
T Consensus 165 ~q~l~eiiq~yPa~~~~ne~GK~v~~~~NKyflM~~e~d~~~~ke~~~eerkWR~WvDn~lVHLiSPNvYrn~~EsletF 244 (370)
T KOG3029|consen 165 RQDLGEIIQMYPATSFFNEDGKEVNDILNKYFLMYREHDPGVSKETDEEERKWRSWVDNHLVHLISPNVYRNMGESLETF 244 (370)
T ss_pred CCCHHHHHHhccccccccccccchhhcchhheeeeeccCCCccccchHHHhHHHHHHhhhhhhhcCcccccChhhHHHHH
Confidence 0 01111 11 233356778888888776665555543221100
Q ss_pred --C---CC-----C----------------------CCHHHHHHHHHHHHHHHHHHHHhh-cCCCccccCCccHhhhhhh
Q 038052 124 --F---GM-----T----------------------IDPTMVEEYKAKLAKVLDVYEARL-TKSKYLASDSFTLVDMHHL 170 (225)
Q Consensus 124 --~---~~-----~----------------------~~~~~~~~~~~~l~~~l~~le~~L-~~~~~l~G~~~t~aD~~l~ 170 (225)
+ |. + ..+......++.+...++.+-..| .+++|+.|++|++||+.+|
T Consensus 245 ewf~q~G~w~~~FpawEr~lavY~GAtAM~lisK~LKkkhni~D~Re~lydA~d~Wvaalgknr~flGG~kPnLaDLsvf 324 (370)
T KOG3029|consen 245 EWFSQAGEWDVHFPAWERDLAVYCGATAMYLISKMLKKKHNISDEREHLYDAADQWVAALGKNRPFLGGKKPNLADLSVF 324 (370)
T ss_pred HHHHHcCCccccCchHHHHHHHHhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhCCCCCccCCCCCchhhhhhh
Confidence 0 00 0 000111223444555555555556 4669999999999999999
Q ss_pred hHHHHHHhhhhhhhhccCchHHHHHHHHhcC
Q 038052 171 PTINLLMRTQVKQLFNARPRVSAWVADITAR 201 (225)
Q Consensus 171 ~~l~~~~~~~~~~~~~~~p~L~~~~~~~~~~ 201 (225)
+++..+..+......-...++..|+-+|++.
T Consensus 325 Gvl~sm~gc~afkd~~q~t~I~eW~~rmeal 355 (370)
T KOG3029|consen 325 GVLRSMEGCQAFKDCLQNTSIGEWYYRMEAL 355 (370)
T ss_pred hhhhHhhhhhHHHHHHhcchHHHHHHHHHHH
Confidence 9999999885544445568999999999863
No 56
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.72 E-value=3.8e-17 Score=103.84 Aligned_cols=72 Identities=19% Similarity=0.270 Sum_probs=62.4
Q ss_pred ceEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeC----CEEeeehHHHHHHHHHh
Q 038052 3 VIKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHG----GQKIFESRAITQYIAME 78 (225)
Q Consensus 3 ~~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~----~~~l~eS~aI~~yL~~~ 78 (225)
+++||+++.||+|++++++|+++||+|+.+.+++.. .++ ...+|.+++|+|+++ |.+++||.+|++||++.
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~----~~~-~~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~ 75 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVS----RKE-IKWSSYKKVPILRVESGGDGQQLVDSSVIISTLKTY 75 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCchh----HHH-HHHhCCCccCEEEECCCCCccEEEcHHHHHHHHHHH
Confidence 489999999999999999999999999999887532 123 356999999999955 78999999999999987
Q ss_pred C
Q 038052 79 Y 79 (225)
Q Consensus 79 ~ 79 (225)
.
T Consensus 76 ~ 76 (77)
T cd03040 76 L 76 (77)
T ss_pred c
Confidence 4
No 57
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=2e-16 Score=111.16 Aligned_cols=186 Identities=14% Similarity=0.131 Sum_probs=133.1
Q ss_pred eEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEE-eCCEEeeehHHHHHHHHHhCCCC
Q 038052 4 IKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALE-HGGQKIFESRAITQYIAMEYPEK 82 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~-~~~~~l~eS~aI~~yL~~~~~~~ 82 (225)
|+||-+.+||||-|+|++.-.+|||++.+....... +.-.++-...+||+|+ +||..+.||.+|++|+++..+.+
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe----~Tp~rmiG~KqVPiL~Kedg~~m~ESlDIV~y~d~~~~~~ 76 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDE----ETPIRMIGQKQVPILQKEDGRAMPESLDIVHYVDELDGKP 76 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCChhhheeccCcc----cChhhhhcccccceEEccccccchhhhHHHHHHHHhcCch
Confidence 689999999999999999999999999998776432 3334567778999998 89999999999999999998753
Q ss_pred CCCCCCCCccchHHHHHHHHHhhhcchhHHHHHHHHHHhccCCCCCCH---------------------HHHHHHHHHHH
Q 038052 83 GTRLASADKPSSSFLIWKEVEAHQFDPVASKLTWEIVLKPMFGMTIDP---------------------TMVEEYKAKLA 141 (225)
Q Consensus 83 ~~~l~p~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~l~ 141 (225)
+... ..+..+..|+.-+.........+.+. +.-+..-..+ ........++.
T Consensus 77 ---~lt~-~~~pai~~wlrkv~~y~nkll~PR~~----k~~l~EF~T~sA~~yf~~KKe~s~g~F~~~l~~t~~~~~~i~ 148 (215)
T COG2999 77 ---LLTG-KVRPAIEAWLRKVNGYLNKLLLPRFA----KSALPEFATPSARKYFTDKKEASEGSFESLLNHTAQYLKRIQ 148 (215)
T ss_pred ---hhcc-CcCHHHHHHHHHhcchHhhhhhhhHh----hcCCccccCHHHHHHHHhhhhhccccHHHHHhchHHHHHHHH
Confidence 3222 56677888887665554443333322 2111110001 12344566677
Q ss_pred HHHHHHHHhhcCCCccccCCccHhhhhhhhHHHHHHhhhhhhhhccCchHHHHHHHHhcChhHH
Q 038052 142 KVLDVYEARLTKSKYLASDSFTLVDMHHLPTINLLMRTQVKQLFNARPRVSAWVADITARPAWT 205 (225)
Q Consensus 142 ~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~p~L~~~~~~~~~~p~~~ 205 (225)
..|+.++.++.+..-+. ..+|+-|+.+|+.|.++-.+.. +.-..++..|..+|.+...+.
T Consensus 149 ~dl~~l~~Li~~~s~~n-~~l~~ddi~vFplLRnlt~v~g---i~wps~v~dy~~~msektqV~ 208 (215)
T COG2999 149 ADLRALDKLIVGPSAVN-GELSEDDILVFPLLRNLTLVAG---IQWPSRVADYRDNMSEKTQVN 208 (215)
T ss_pred HHHHHHHHHhcCcchhc-cccchhhhhhhHHhccceeccc---CCCcHHHHHHHHHHHHhhCcc
Confidence 77888888876655343 4699999999999999877643 344458999999998865543
No 58
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.72 E-value=4.6e-17 Score=102.21 Aligned_cols=68 Identities=28% Similarity=0.451 Sum_probs=61.6
Q ss_pred ccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCEEeeehHHHHHHHH
Q 038052 8 GAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQKIFESRAITQYIA 76 (225)
Q Consensus 8 ~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~l~eS~aI~~yL~ 76 (225)
....|+++++++++|+++|++|+.+.+++..+ .+.+++.+.||+|++|+|+++|.+++||.+|++||+
T Consensus 6 ~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~-~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 6 NKNYSSWSLRPWLLLKAAGIPFEEILVPLYTP-DTRARILEFSPTGKVPVLVDGGIVVWDSLAICEYLA 73 (73)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCc-cccHHHHhhCCCCcCCEEEECCEEEEcHHHHHHHhC
Confidence 45689999999999999999999999998664 356899999999999999999999999999999984
No 59
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.67 E-value=3.5e-16 Score=97.27 Aligned_cols=71 Identities=46% Similarity=0.700 Sum_probs=63.4
Q ss_pred eEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCEEeeehHHHHHHHH
Q 038052 4 IKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQKIFESRAITQYIA 76 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~l~eS~aI~~yL~ 76 (225)
++||+++.||+|++++++|+++|++|+.+.++...+. ..++...+|.+++|+|+++|.+++||.+|++||+
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~P~l~~~~~~~~es~~I~~yl~ 71 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGE--QEEFLALNPLGKVPVLEDGGLVLTESLAILEYLA 71 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCC--CHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999998865432 2257889999999999999999999999999984
No 60
>cd03178 GST_C_Ure2p_like GST_C family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The N-terminal thioredoxin-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of en
Probab=99.66 E-value=1.4e-15 Score=103.93 Aligned_cols=112 Identities=22% Similarity=0.373 Sum_probs=90.7
Q ss_pred cchHHHHHHHHHhhhcchhHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCccHhhhhhhh
Q 038052 92 PSSSFLIWKEVEAHQFDPVASKLTWEIVLKPMFGMTIDPTMVEEYKAKLAKVLDVYEARLTKSKYLASDSFTLVDMHHLP 171 (225)
Q Consensus 92 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~ 171 (225)
+++++++|+.|.+..+...+...+...... ...++...+...+++.+.++.+|+.|++++|++|+++|+|||++++
T Consensus 1 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~ 76 (113)
T cd03178 1 ERYEVLQWLFFQMGGLGPMFGQAGHFSRYA----PEKIPYAIERYTNEAKRLYGVLDKRLAGRDYLAGDEYSIADIAIFP 76 (113)
T ss_pred ChHHHHHHHHHHHccCCCcchHHHHHHHhC----CCCChHHHHHHHHHHHHHHHHHHHHHccCCcccCCCCCeeeeeHHH
Confidence 478899999999999888766543322221 2344556677889999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhccCchHHHHHHHHhcChhHHHHH
Q 038052 172 TINLLMRTQVKQLFNARPRVSAWVADITARPAWTKVL 208 (225)
Q Consensus 172 ~l~~~~~~~~~~~~~~~p~L~~~~~~~~~~p~~~~~~ 208 (225)
.+.+...... .....+|++.+|++++.++|++++++
T Consensus 77 ~~~~~~~~~~-~~~~~~p~l~~w~~~~~~~p~~~~~~ 112 (113)
T cd03178 77 WVRRLEWIGI-DDLDDFPNVKRWLDRIAARPAVQRGL 112 (113)
T ss_pred HHHHHHhccc-cchhhchHHHHHHHHHhhCHHHHHhc
Confidence 9988866532 23678999999999999999999875
No 61
>cd03188 GST_C_Beta GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site for
Probab=99.65 E-value=6.4e-16 Score=105.66 Aligned_cols=113 Identities=19% Similarity=0.296 Sum_probs=87.2
Q ss_pred cchHHHHHHHHHhhhcchhHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCccHhhhhhhh
Q 038052 92 PSSSFLIWKEVEAHQFDPVASKLTWEIVLKPMFGMTIDPTMVEEYKAKLAKVLDVYEARLTKSKYLASDSFTLVDMHHLP 171 (225)
Q Consensus 92 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~ 171 (225)
+++++++|+.+.++.+.+.+..........+ +....+...+...+++.+.++.+|+.|++++|++|+++|+|||++++
T Consensus 2 ~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~aDi~~~~ 79 (114)
T cd03188 2 ERARLLEWLNFLSSELHKAFGPLFYPARWAT--DEAAQEEVKAAARERLAARLAYLDAQLAGGPYLLGDRFSVADAYLFV 79 (114)
T ss_pred cHHHHHHHHHHHhhhhchhhhhccccccccc--ChhhHHHHHHHHHHHHHHHHHHHHHHhcCCCeeeCCCcchHHHHHHH
Confidence 5789999999999888877654432211000 01122445667788899999999999998999999999999999999
Q ss_pred HHHHHHhhhhhhhhccCchHHHHHHHHhcChhHHHHH
Q 038052 172 TINLLMRTQVKQLFNARPRVSAWVADITARPAWTKVL 208 (225)
Q Consensus 172 ~l~~~~~~~~~~~~~~~p~L~~~~~~~~~~p~~~~~~ 208 (225)
.+.++...+. ..+.+|++.+|++++.++|++++++
T Consensus 80 ~~~~~~~~~~--~~~~~p~l~~w~~~~~~~p~~k~~~ 114 (114)
T cd03188 80 VLRWAPGVGL--DLSDWPNLAAYLARVAARPAVQAAL 114 (114)
T ss_pred HHHHHhhcCC--ChhhChHHHHHHHHHHhCHHhHhhC
Confidence 9988755422 2468999999999999999999863
No 62
>cd03190 GST_C_ECM4_like GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4. ECM4, a gene of unknown function, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast.
Probab=99.65 E-value=1.6e-15 Score=107.74 Aligned_cols=111 Identities=16% Similarity=0.169 Sum_probs=88.4
Q ss_pred ccchHHHHHHHHHhhhcchhHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCccHhhhhhh
Q 038052 91 KPSSSFLIWKEVEAHQFDPVASKLTWEIVLKPMFGMTIDPTMVEEYKAKLAKVLDVYEARLTKSKYLASDSFTLVDMHHL 170 (225)
Q Consensus 91 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~l~ 170 (225)
..++++++|++|....+...+.... ...+++..+...+++.+.|+.+|++|++++|++|+++|+||++++
T Consensus 3 ~~~a~i~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~l~~~l~~LE~~L~~~~yl~Gd~~TlADi~l~ 72 (142)
T cd03190 3 ELRSEIDELNEWIYDNINNGVYKAG----------FATTQEAYDEAVDELFEALDRLEELLSDRRYLLGDRLTEADIRLF 72 (142)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHh----------hccCHHHHHHHHHHHHHHHHHHHHHHccCCeeeCCCccHHHHHHH
Confidence 4678899999999988766543211 134456677788899999999999999999999999999999999
Q ss_pred hHHHHHHhhhh------hhhhccCchHHHHHHHHhcChhHHHHHhhc
Q 038052 171 PTINLLMRTQV------KQLFNARPRVSAWVADITARPAWTKVLAMQ 211 (225)
Q Consensus 171 ~~l~~~~~~~~------~~~~~~~p~L~~~~~~~~~~p~~~~~~~~~ 211 (225)
+.+.++..... ....+.+|+|.+|++++.++|+++++....
T Consensus 73 ~~l~~~~~~~~~~~~~~~~~~~~~P~L~~w~~r~~~~P~~k~~~~~~ 119 (142)
T cd03190 73 TTLIRFDAVYVQHFKCNLKRIRDYPNLWNYLRRLYQNPGVAETTNFD 119 (142)
T ss_pred HHHHHHHHHhhhhcccccchhhhCchHHHHHHHHhcCchHhhhcCHH
Confidence 99887643211 123468999999999999999999987753
No 63
>cd03196 GST_C_5 GST_C family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.64 E-value=1.1e-15 Score=104.71 Aligned_cols=110 Identities=20% Similarity=0.309 Sum_probs=87.7
Q ss_pred ccchHHHHHHHHHhhhcchhHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCccHhhhhhh
Q 038052 91 KPSSSFLIWKEVEAHQFDPVASKLTWEIVLKPMFGMTIDPTMVEEYKAKLAKVLDVYEARLTKSKYLASDSFTLVDMHHL 170 (225)
Q Consensus 91 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~l~ 170 (225)
..++++++|+.+.+..+...+....+.... .. ...+...+++.+.++.+|++|++++|++|+++|+||++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~----~~~~~~~~~i~~~l~~le~~L~~~~yl~Gd~~tlADi~l~ 76 (115)
T cd03196 5 AALKEMLALIAENDNEFKHHLDRYKYADRY----PE----ESEEEYRQQAEAFLKDLEARLQQHSYLLGDKPSLADWAIF 76 (115)
T ss_pred HHHHHHHHHHHHcchhhHHHHHhccchhhc----Cc----ccHHHHHHHHHHHHHHHHHHHccCCccCCCCccHHHHHHH
Confidence 688999999999998888777665544221 11 1366778889999999999999999999999999999999
Q ss_pred hHHHHHHhhh-hhhhhccCchHHHHHHHHhcChhHHHHH
Q 038052 171 PTINLLMRTQ-VKQLFNARPRVSAWVADITARPAWTKVL 208 (225)
Q Consensus 171 ~~l~~~~~~~-~~~~~~~~p~L~~~~~~~~~~p~~~~~~ 208 (225)
+.+.++.... .....+.+|+|.+|++++.++|++++++
T Consensus 77 ~~l~~~~~~~~~~~~~~~~P~L~~w~~r~~~rpa~~~~~ 115 (115)
T cd03196 77 PFVRQFAHVDPKWFDQSPYPRLRRWLNGFLASPLFSKIM 115 (115)
T ss_pred HHHHHHHHhhhcccCcccCHHHHHHHHHHHcChHHHhhC
Confidence 9887665331 1122589999999999999999999863
No 64
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=8.1e-16 Score=115.57 Aligned_cols=194 Identities=17% Similarity=0.146 Sum_probs=143.1
Q ss_pred eEEeccCCChhhHHHHHHHHhcCCc--ceEEeccC----CCCCCC-----------------chhHhhh----CCCCCCC
Q 038052 4 IKVHGAAMSTAAQRVFTCLYEKELN--FEFVPVDM----ASGEHK-----------------KEAYLSL----NPFGQVP 56 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L~~~gi~--y~~~~v~~----~~~~~~-----------------~~~~~~~----~P~g~vP 56 (225)
+.||..-.|||+.|..++=+.||+. ..+..+.+ ..|.-. .+-|... +..-+||
T Consensus 52 YhLYvslaCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F~~~~~g~t~dpl~g~~~L~~~Y~~adP~YsgRvTVP 131 (324)
T COG0435 52 YHLYVSLACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTFDPEFPGATGDPLYGIERLSQLYTRADPDYSGRVTVP 131 (324)
T ss_pred EEEEEEecCchHHHHHHHHHHhcccccceEEEecccccCCCceEcCCCCCCCCCcccchhHHHHHHhhcCCCCCCceeEE
Confidence 6799999999999999999999985 11222211 111100 0111122 2334899
Q ss_pred eEEeC---CEEeeehHHHHHHHHHhCCC---CCCCCCCCCccchHHHHHHHHHhhhcchhHHHHHHHHHHhccCCCCCCH
Q 038052 57 ALEHG---GQKIFESRAITQYIAMEYPE---KGTRLASADKPSSSFLIWKEVEAHQFDPVASKLTWEIVLKPMFGMTIDP 130 (225)
Q Consensus 57 ~L~~~---~~~l~eS~aI~~yL~~~~~~---~~~~l~p~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (225)
||-+. ..|-.||..|++-+...++. ....++|+ ..+.+++.+..++.+.+..-+... |-+..+
T Consensus 132 VLwDk~~~tIVnNES~eIirm~N~aFde~~~~~~dlyP~-~Lr~eId~~n~~Iy~~vNNGVYk~----------GFA~tq 200 (324)
T COG0435 132 VLWDKKTQTIVNNESAEIIRMFNSAFDEFGASAVDLYPE-ALRTEIDELNKWIYDTVNNGVYKA----------GFATTQ 200 (324)
T ss_pred EEEecCCCeeecCCcHHHHHHHHHHHHHHhhhccccCCH-HHHHHHHHHHhhhcccccCceeee----------cccchH
Confidence 99863 34455999999998876542 13368998 688889999988877765544322 345667
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCccccCCccHhhhhhhhHHHHHHhh--hh----hhhhccCchHHHHHHHHhcChhH
Q 038052 131 TMVEEYKAKLAKVLDVYEARLTKSKYLASDSFTLVDMHHLPTINLLMRT--QV----KQLFNARPRVSAWVADITARPAW 204 (225)
Q Consensus 131 ~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~--~~----~~~~~~~p~L~~~~~~~~~~p~~ 204 (225)
++.++..+.+-+.|+.||+.|+++.|++||++|-||+-||+.|-++..+ +. ..-+..||||..|+..+.+.|.+
T Consensus 201 ~aYeea~~~lF~~Ld~lE~~L~~~ryl~Gd~lTEAD~RLftTlvRFD~VYvgHFKCN~~rI~dypnL~~yLr~LYq~pg~ 280 (324)
T COG0435 201 EAYEEAVKKLFEALDKLEQILSERRYLTGDQLTEADIRLFTTLVRFDPVYVGHFKCNLRRIRDYPNLWGYLRDLYQLPGF 280 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCeeeccccchHhhhhhhheeEeecceEEeeeecccchhhcCchHHHHHHHHhcCccc
Confidence 7888888899999999999999999999999999999999999998876 21 12356799999999999999999
Q ss_pred HHHH
Q 038052 205 TKVL 208 (225)
Q Consensus 205 ~~~~ 208 (225)
.++.
T Consensus 281 ~~T~ 284 (324)
T COG0435 281 AETV 284 (324)
T ss_pred cccc
Confidence 8773
No 65
>cd03183 GST_C_Theta GST_C family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenatio
Probab=99.64 E-value=4.6e-15 Score=103.31 Aligned_cols=119 Identities=20% Similarity=0.400 Sum_probs=90.9
Q ss_pred cchHHHHHHHHHhhhcchhHHHHHHHHHHhccC-CCCCCHHHHHHHHHHHHHHHHHHHHh-hcCCCccccCCccHhhhhh
Q 038052 92 PSSSFLIWKEVEAHQFDPVASKLTWEIVLKPMF-GMTIDPTMVEEYKAKLAKVLDVYEAR-LTKSKYLASDSFTLVDMHH 169 (225)
Q Consensus 92 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~le~~-L~~~~~l~G~~~t~aD~~l 169 (225)
+++++++|+.|....+...+...+......+.+ +...++...+...+++.+.++.+|++ +++++|++|+++|+||+++
T Consensus 1 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~l~Gd~~t~ADi~l 80 (126)
T cd03183 1 KRARVDEYLAWQHTNLRLGCAKYFWQKVLLPLLGGKPVSPEKVKKAEENLEESLDLLENYFLKDKPFLAGDEISIADLSA 80 (126)
T ss_pred CcccHHHHHHHHHhhhHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHH
Confidence 367789999998888776555443333222222 23345667778889999999999997 5557899999999999999
Q ss_pred hhHHHHHHhhhhhhhhccCchHHHHHHHHhc--ChhHHHHHhhc
Q 038052 170 LPTINLLMRTQVKQLFNARPRVSAWVADITA--RPAWTKVLAMQ 211 (225)
Q Consensus 170 ~~~l~~~~~~~~~~~~~~~p~L~~~~~~~~~--~p~~~~~~~~~ 211 (225)
++.+.+....+. ...+.+|+|.+|++++.+ +|+++++++..
T Consensus 81 ~~~~~~~~~~~~-~~~~~~p~l~~w~~~~~~~~~p~~~~~~~~~ 123 (126)
T cd03183 81 VCEIMQPEAAGY-DVFEGRPKLAAWRKRVKEAGNPLFDEAHKII 123 (126)
T ss_pred HHHHHHHHhcCC-cccccCchHHHHHHHHHHhcchhHHHHHHHH
Confidence 998877765432 235889999999999999 99999987654
No 66
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.64 E-value=1.2e-15 Score=95.52 Aligned_cols=65 Identities=26% Similarity=0.360 Sum_probs=58.3
Q ss_pred eEEeccC-------CChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCEEeeehHHHHHHHH
Q 038052 4 IKVHGAA-------MSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQKIFESRAITQYIA 76 (225)
Q Consensus 4 ~~Ly~~~-------~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~l~eS~aI~~yL~ 76 (225)
++||.++ .||+|++++++|+++||+|+.+.++... .||.|++|+|+++|.+++||.+|++||+
T Consensus 1 ~~L~~~~~~~~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~~----------~~p~g~vP~l~~~g~~l~es~~I~~yL~ 70 (72)
T cd03054 1 LELYQWGRAFGLPSLSPECLKVETYLRMAGIPYEVVFSSNPW----------RSPTGKLPFLELNGEKIADSEKIIEYLK 70 (72)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHhCCCceEEEecCCcc----------cCCCcccCEEEECCEEEcCHHHHHHHHh
Confidence 4677777 8999999999999999999999887531 7899999999999999999999999998
Q ss_pred Hh
Q 038052 77 ME 78 (225)
Q Consensus 77 ~~ 78 (225)
++
T Consensus 71 ~~ 72 (72)
T cd03054 71 KK 72 (72)
T ss_pred hC
Confidence 74
No 67
>cd03180 GST_C_2 GST_C family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.61 E-value=1.2e-14 Score=98.62 Aligned_cols=109 Identities=25% Similarity=0.395 Sum_probs=85.7
Q ss_pred cchHHHHHHHHHhhhcchhHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCccHhhhhhhh
Q 038052 92 PSSSFLIWKEVEAHQFDPVASKLTWEIVLKPMFGMTIDPTMVEEYKAKLAKVLDVYEARLTKSKYLASDSFTLVDMHHLP 171 (225)
Q Consensus 92 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~ 171 (225)
+++++++|+.+..+.+...+...+......+ ....++...+...+++.+.|+.+|++|++++|++|+++|+||+++++
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~lE~~L~~~~~l~g~~~t~aDi~~~~ 79 (110)
T cd03180 2 ARARADRWMDWQTSTLNPAFRYAFWGLVRTP--PEQRDPAAIAASLAAWAKLMAILDAQLAGRPYLAGDRFTLADIPLGC 79 (110)
T ss_pred chhHHHHHHHHHHhhcChHHHHHHHHHHcCC--cccCCHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCCHHHHHHHH
Confidence 5788999999998888888766544322111 12345566777888999999999999999999999999999999998
Q ss_pred HHHHHHhhhhhhhhccCchHHHHHHHHhcChhH
Q 038052 172 TINLLMRTQVKQLFNARPRVSAWVADITARPAW 204 (225)
Q Consensus 172 ~l~~~~~~~~~~~~~~~p~L~~~~~~~~~~p~~ 204 (225)
.+....... ...+++|+|.+|++++.++|++
T Consensus 80 ~~~~~~~~~--~~~~~~p~l~~~~~~~~~~p~~ 110 (110)
T cd03180 80 SAYRWFELP--IERPPLPHLERWYARLRARPAF 110 (110)
T ss_pred HHHHHHHcc--cccccCchHHHHHHHHHhCCCC
Confidence 886543332 2368899999999999999975
No 68
>cd03209 GST_C_Mu GST_C family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the m
Probab=99.61 E-value=1.2e-14 Score=100.50 Aligned_cols=115 Identities=14% Similarity=0.199 Sum_probs=86.5
Q ss_pred cchHHHHHHHHHhhhcchhHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCccHhhhhhhh
Q 038052 92 PSSSFLIWKEVEAHQFDPVASKLTWEIVLKPMFGMTIDPTMVEEYKAKLAKVLDVYEARLTKSKYLASDSFTLVDMHHLP 171 (225)
Q Consensus 92 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~ 171 (225)
+++.+++..+.+.+.... +...+. ....+...+...+.+.+.+..||++|++++|++|+++|+||+++++
T Consensus 2 e~~~id~~~~~~~d~~~~-~~~~~~---------~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~T~aDi~l~~ 71 (121)
T cd03209 2 ERIRVDMLEQQAMDLRMG-LARICY---------SPDFEKLKPDYLAKLPDKLKLFSDFLGDRPWFAGDKITYVDFLLYE 71 (121)
T ss_pred chHHHHHHHHHHHHHHHH-HHHhhc---------CcchHHHHHHHHHHHHHHHHHHHHHhCCCCCcCCCCccHHHHHHHH
Confidence 567777777665543322 222211 1122345566788899999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhccCchHHHHHHHHhcChhHHHHHhhccCCccc
Q 038052 172 TINLLMRTQVKQLFNARPRVSAWVADITARPAWTKVLAMQKVNFYP 217 (225)
Q Consensus 172 ~l~~~~~~~~~~~~~~~p~L~~~~~~~~~~p~~~~~~~~~~~~~~p 217 (225)
.+.++.... ....+.+|+|.+|++++.++|++++++++.+..-.|
T Consensus 72 ~~~~~~~~~-~~~~~~~P~l~~~~~rv~~~p~vk~~~~~~~~~~~~ 116 (121)
T cd03209 72 ALDQHRIFE-PDCLDAFPNLKDFLERFEALPKISAYMKSDRFIKWP 116 (121)
T ss_pred HHHHHHHhC-ccccccChHHHHHHHHHHHCHHHHHHHhcccCcCCC
Confidence 998886532 234678999999999999999999999998763333
No 69
>cd03186 GST_C_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.61 E-value=7.8e-15 Score=99.21 Aligned_cols=105 Identities=15% Similarity=0.213 Sum_probs=83.7
Q ss_pred ccchHHHHHHHHHhhhcchhHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCccHhhhhhh
Q 038052 91 KPSSSFLIWKEVEAHQFDPVASKLTWEIVLKPMFGMTIDPTMVEEYKAKLAKVLDVYEARLTKSKYLASDSFTLVDMHHL 170 (225)
Q Consensus 91 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~l~ 170 (225)
.++++++.|+.+++..+...+..... + .++..+...+.+.+.|..+|++|++++|++|+++|+|||+++
T Consensus 2 ~~ra~~r~w~~~~~~~~~~~~~~~~~----------~-~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~~~ 70 (107)
T cd03186 2 VARARSRLLMHRIEQDWYPLVDTIEK----------G-RKKEAEKARKELRESLLALAPVFAHKPYFMSEEFSLVDCALA 70 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh----------C-cHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCcHHHHHHH
Confidence 36889999999998877666543321 1 144456788889999999999999999999999999999999
Q ss_pred hHHHHHHhhhhhhhhccCchHHHHHHHHhcChhHHHH
Q 038052 171 PTINLLMRTQVKQLFNARPRVSAWVADITARPAWTKV 207 (225)
Q Consensus 171 ~~l~~~~~~~~~~~~~~~p~L~~~~~~~~~~p~~~~~ 207 (225)
+.+.++...+. .....+|+|.+|++++.+||+++++
T Consensus 71 ~~~~~~~~~~~-~~~~~~p~l~~w~~~~~~rpa~~~~ 106 (107)
T cd03186 71 PLLWRLPALGI-ELPKQAKPLKDYMERVFARDSFQKS 106 (107)
T ss_pred HHHHHHHHcCC-CCcccchHHHHHHHHHHCCHHHHHh
Confidence 99866543332 2335899999999999999999875
No 70
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=4.8e-14 Score=101.61 Aligned_cols=178 Identities=15% Similarity=0.218 Sum_probs=131.2
Q ss_pred ChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCEEeeehHHHHHHHHHhCCCCCCCCCCCCc
Q 038052 12 STAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQKIFESRAITQYIAMEYPEKGTRLASADK 91 (225)
Q Consensus 12 s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~l~eS~aI~~yL~~~~~~~~~~l~p~~~ 91 (225)
...|.+|..+|+.+++||.++.-+- .+| ++|.|+||.|..+..++.|-.+|..+...+.-.-+ +...+ .
T Consensus 34 ~ascLAVqtfLrMcnLPf~v~~~~N-------aef--mSP~G~vPllr~g~~~~aef~pIV~fVeak~~~l~-s~lsE-~ 102 (257)
T KOG3027|consen 34 NASCLAVQTFLRMCNLPFNVRQRAN-------AEF--MSPGGKVPLLRIGKTLFAEFEPIVDFVEAKGVTLT-SWLSE-D 102 (257)
T ss_pred chhHHHHHHHHHHcCCCceeeecCC-------ccc--cCCCCCCceeeecchhhhhhhHHHHHHHHhccchh-hhhhh-H
Confidence 4468999999999999999986542 333 78999999999999999999999999999864332 12222 5
Q ss_pred cchHHHHHHHHHhhhcchhHHHHHH-------------------------------HHHHhccCCCCCCHHHHHHHHHHH
Q 038052 92 PSSSFLIWKEVEAHQFDPVASKLTW-------------------------------EIVLKPMFGMTIDPTMVEEYKAKL 140 (225)
Q Consensus 92 ~~a~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~l 140 (225)
+++.++..+..++..+..+=....+ ....+.+.....+....+...++.
T Consensus 103 qkadmra~vslVen~~t~aEl~~s~~de~ty~~vT~~R~gs~ypWPLs~i~~f~Krr~~~r~lk~~~W~~~~~DqVie~v 182 (257)
T KOG3027|consen 103 QKADMRAYVSLVENLLTTAELYVSWNDEETYDEVTALRYGSVYPWPLSHILPFVKRRKALRELKVYDWDDKTMDQVIEQV 182 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHhhcCcccccHHHHHHHH
Confidence 6777777777666554321111111 001111111234444566778888
Q ss_pred HHHHHHHHHhhcCCCccccCCccHhhhhhhhHHHHHHhhhh-----hhhhccCchHHHHHHHHhc
Q 038052 141 AKVLDVYEARLTKSKYLASDSFTLVDMHHLPTINLLMRTQV-----KQLFNARPRVSAWVADITA 200 (225)
Q Consensus 141 ~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~-----~~~~~~~p~L~~~~~~~~~ 200 (225)
...++.|+..|+.++||.|++||-+|..+|+.+..+..+.. ....++|+||-+++.|+++
T Consensus 183 dkc~~aLsa~L~~q~yf~g~~P~elDAlvFGHlytilTt~Lpn~ela~~lkkys~LlefcrrIeq 247 (257)
T KOG3027|consen 183 DKCCRALSAQLGSQPYFTGDQPTELDALVFGHLYTILTTRLPNMELANILKKYSNLLEFCRRIEQ 247 (257)
T ss_pred HHHHHHHHHHhcCCCccCCCCccHHHHHHHhhhHHhhhhcCCcHHHHHHHHHhHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999988732 3467899999999999986
No 71
>cd03181 GST_C_EFB1gamma GST_C family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role
Probab=99.60 E-value=2.7e-14 Score=98.94 Aligned_cols=117 Identities=22% Similarity=0.338 Sum_probs=93.5
Q ss_pred cchHHHHHHHHHhhhcchhHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCccHhhhhhhh
Q 038052 92 PSSSFLIWKEVEAHQFDPVASKLTWEIVLKPMFGMTIDPTMVEEYKAKLAKVLDVYEARLTKSKYLASDSFTLVDMHHLP 171 (225)
Q Consensus 92 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~ 171 (225)
++++++.|+.+.+..+...+...+.... . ..+.+....+...+++.+.|+.+|+.|++++|++|+++|+||+++++
T Consensus 1 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~siaDi~l~~ 76 (123)
T cd03181 1 EEAQVLQWVSFANTELLPAVAAWFLPLL-G---IAPYNKKSVEAALEELDRVLGVLEERLLKRTYLVGERLTLADIFVAG 76 (123)
T ss_pred ChHHHHHHHHHHHhhhHHHHHHHHHHHc-C---ccCCCHHHHHHHHHHHHHHHHHHHHHHccCceeccCCccHHHHHHHH
Confidence 4688999999999888887765544321 1 12345566778889999999999999999999999999999999999
Q ss_pred HHHHHHhhh-hhhhhccCchHHHHHHHHhcChhHHHHHhhcc
Q 038052 172 TINLLMRTQ-VKQLFNARPRVSAWVADITARPAWTKVLAMQK 212 (225)
Q Consensus 172 ~l~~~~~~~-~~~~~~~~p~L~~~~~~~~~~p~~~~~~~~~~ 212 (225)
.+.+..... .....+.+|++.+|++++.++|++++++++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~ 118 (123)
T cd03181 77 ALLLGFTYVFDKEWRAKYPNVTRWFNTVVNQPIFKAVFGEVK 118 (123)
T ss_pred HHHHHHHHHcCHHHHHhChHHHHHHHHHHcCHHHHHHcCCCC
Confidence 998875431 12235789999999999999999999987764
No 72
>cd03185 GST_C_Tau GST_C family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropi
Probab=99.59 E-value=1e-14 Score=101.53 Aligned_cols=109 Identities=17% Similarity=0.197 Sum_probs=87.3
Q ss_pred cchHHHHHHHHHhhhcchhHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCccHhhhhhhh
Q 038052 92 PSSSFLIWKEVEAHQFDPVASKLTWEIVLKPMFGMTIDPTMVEEYKAKLAKVLDVYEARLTKSKYLASDSFTLVDMHHLP 171 (225)
Q Consensus 92 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~ 171 (225)
++++++.|+.+.++.+...+...+.. .+...+....++.+.++.+|+.|++++|++|+++|+||+++++
T Consensus 3 ~ra~~~~w~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi~l~~ 71 (126)
T cd03185 3 ERAVARFWAAFIDDKLFPAGRKVLAA-----------KGEEREKAKEEALEALKVLEEELGGKPFFGGDTIGYVDIALGS 71 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcc-----------chHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHH
Confidence 67889999999888777665443211 1344566788899999999999998999999999999999999
Q ss_pred HHHHHHhhh---hhh--hhccCchHHHHHHHHhcChhHHHHHhhc
Q 038052 172 TINLLMRTQ---VKQ--LFNARPRVSAWVADITARPAWTKVLAMQ 211 (225)
Q Consensus 172 ~l~~~~~~~---~~~--~~~~~p~L~~~~~~~~~~p~~~~~~~~~ 211 (225)
.+.++.... ... ..+.+|++.+|++++.++|+++++++..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 116 (126)
T cd03185 72 FLGWFRAYEEVGGVKLLDEEKTPLLAAWAERFLELEAVKEVLPDR 116 (126)
T ss_pred HHHHHHHHHHHcCccccCcccCchHHHHHHHHHhccHHHHhCCCH
Confidence 998875431 112 2467999999999999999999998775
No 73
>cd03177 GST_C_Delta_Epsilon GST_C family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites th
Probab=99.58 E-value=1.9e-14 Score=99.01 Aligned_cols=111 Identities=21% Similarity=0.264 Sum_probs=86.2
Q ss_pred cchHHHHHHHHHhhhcchhHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCccHhhhhhhh
Q 038052 92 PSSSFLIWKEVEAHQFDPVASKLTWEIVLKPMFGMTIDPTMVEEYKAKLAKVLDVYEARLTKSKYLASDSFTLVDMHHLP 171 (225)
Q Consensus 92 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~ 171 (225)
+++++++|+.+....+.......+...... .. ...+...+++.+.|+.+|++|++++|++|+++|+||+++++
T Consensus 2 ~~a~~~~wl~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~s~aDi~l~~ 74 (118)
T cd03177 2 KRAIVNQRLHFDSGTLYQRLRDYYYPILFG----GA---EPPEEKLDKLEEALDFLETFLEGSDYVAGDQLTIADLSLVA 74 (118)
T ss_pred hHHHHHHHHHhhhchHHHHHHHHHHHHHHc----CC---CCCHHHHHHHHHHHHHHHHHHccCCeeCCCCcCHHHHHHHH
Confidence 578899999988777776665554443321 11 22345677899999999999998899999999999999999
Q ss_pred HHHHHHhhhhhhhhccCchHHHHHHHHhcChhHHHHHhh
Q 038052 172 TINLLMRTQVKQLFNARPRVSAWVADITARPAWTKVLAM 210 (225)
Q Consensus 172 ~l~~~~~~~~~~~~~~~p~L~~~~~~~~~~p~~~~~~~~ 210 (225)
.+.++..... .....+|+|.+|+++|.++|++++....
T Consensus 75 ~~~~~~~~~~-~~~~~~p~l~~w~~~~~~~p~~~~~~~~ 112 (118)
T cd03177 75 TVSTLEALLP-LDLSKYPNVRAWLERLKALPPYEEANGK 112 (118)
T ss_pred HHHHHHHhcC-CChhhCchHHHHHHHHHcccchHHHHHH
Confidence 9998865211 1246799999999999999999987643
No 74
>cd03189 GST_C_GTT1_like GST_C family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endopl
Probab=99.58 E-value=1.9e-14 Score=99.15 Aligned_cols=113 Identities=21% Similarity=0.295 Sum_probs=84.9
Q ss_pred CCC-ccchHHHHHHHHHhhhcchhHHHHHHHHHHhccC----CCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCc
Q 038052 88 SAD-KPSSSFLIWKEVEAHQFDPVASKLTWEIVLKPMF----GMTIDPTMVEEYKAKLAKVLDVYEARLTKSKYLASDSF 162 (225)
Q Consensus 88 p~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~ 162 (225)
|.+ .+++++++|+.+....+...+..........+.. +...++...+....++.+.|+.+|++|++++|++|+++
T Consensus 2 ~~~~~~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd~~ 81 (119)
T cd03189 2 PPDTAEYADYLYWLHFAEGSLMPPLLLKLVLSRIGSAPPPIANKIADKVLAGFINPELKKHLDFLEDRLAKKGYFVGDKL 81 (119)
T ss_pred CCCHHHHHHHHHHHHHHhHhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHhHHHHHHHHHHHHHHccCCCCCCCCC
Confidence 346 8899999999999888877655332221111100 00123445556777899999999999999999999999
Q ss_pred cHhhhhhhhHHHHHHhhhhhhhhccCchHHHHHHHHhcCh
Q 038052 163 TLVDMHHLPTINLLMRTQVKQLFNARPRVSAWVADITARP 202 (225)
Q Consensus 163 t~aD~~l~~~l~~~~~~~~~~~~~~~p~L~~~~~~~~~~p 202 (225)
|+||+++++.+.++..... ....+|+|.+|++++.++|
T Consensus 82 t~ADi~l~~~~~~~~~~~~--~~~~~p~l~~w~~~~~~~p 119 (119)
T cd03189 82 TAADIMMSFPLEAALARGP--LLEKYPNIAAYLERIEARP 119 (119)
T ss_pred CHHHHHHHHHHHHHHHcCc--ccccCchHHHHHHHHhcCC
Confidence 9999999999888765432 4678999999999999987
No 75
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=4.3e-15 Score=110.70 Aligned_cols=193 Identities=19% Similarity=0.162 Sum_probs=138.4
Q ss_pred eEEeccCCChhhHHHHHHHHhcCCc----ceEEec--cCCCCCCC-------------------------chhHhhhCCC
Q 038052 4 IKVHGAAMSTAAQRVFTCLYEKELN----FEFVPV--DMASGEHK-------------------------KEAYLSLNPF 52 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L~~~gi~----y~~~~v--~~~~~~~~-------------------------~~~~~~~~P~ 52 (225)
+-||..-.|||+.|..+.++.||+. +....- +-..|.-. ++-|...+|.
T Consensus 38 yhLYvslaCPWAhRtLi~r~LKGL~~~i~~s~v~~~~d~~gW~F~~~~~~~nDs~~l~~~~d~~~g~k~l~elY~~~~p~ 117 (319)
T KOG2903|consen 38 YHLYVSLACPWAHRTLIVRALKGLEPAIGVSVVHWHLDDKGWRFLDEHIIINDSERLGVTPDPLNGAKRLRELYYIASPN 117 (319)
T ss_pred EEEEEeccCcHHHHHHHHHHHcCccccceeEEeccccCCCcccCCCcccCCCchhcccCCCcccccchhHHHHHhhcCCC
Confidence 5688888899999999999999995 222111 11111100 0111122332
Q ss_pred ----CCCCeEEe---CCEEeeehHHHHHHHHHhC---CC----CCCCCCCCCccchHHHHHHHHHhhhcchhHHHHHHHH
Q 038052 53 ----GQVPALEH---GGQKIFESRAITQYIAMEY---PE----KGTRLASADKPSSSFLIWKEVEAHQFDPVASKLTWEI 118 (225)
Q Consensus 53 ----g~vP~L~~---~~~~l~eS~aI~~yL~~~~---~~----~~~~l~p~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 118 (225)
-+||||-| ...|--||..|++.+...+ .. ..-.|+|. ..+++++++..|+.+.+..-+...
T Consensus 118 Y~grfTVPVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~lDL~P~-~L~~~Ide~N~wvy~~INNGVYk~---- 192 (319)
T KOG2903|consen 118 YTGRFTVPVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVLDLYPS-SLRAQIDETNSWVYDKINNGVYKC---- 192 (319)
T ss_pred CCceEEEEEEEccccceeecCchHHHHHHHhhhhhhhhccccCCccccCCH-HHHHHHhhhhceecccccCceeee----
Confidence 48999986 3455679999999999322 11 11268888 588899999998887776544332
Q ss_pred HHhccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCC--ccccCCccHhhhhhhhHHHHHHhhh-------hhhhhccCc
Q 038052 119 VLKPMFGMTIDPTMVEEYKAKLAKVLDVYEARLTKSK--YLASDSFTLVDMHHLPTINLLMRTQ-------VKQLFNARP 189 (225)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~--~l~G~~~t~aD~~l~~~l~~~~~~~-------~~~~~~~~p 189 (225)
|-+..++..+...+++-+.|+.+|+.|+++. |++|+++|.||+.|++.+-++..+- ...+...||
T Consensus 193 ------GFA~~~e~Ye~~V~~lfe~LDr~E~vL~~~~~~f~~G~~LTeaDirLy~TiIRFD~VY~~hFKCn~~~ir~~Yp 266 (319)
T KOG2903|consen 193 ------GFAEKQEAYEEEVNQLFEALDRCEDVLGKNRKYFLCGDTLTEADIRLYTTIIRFDEVYVQHFKCNKKTIRDEYP 266 (319)
T ss_pred ------ccccccchHHHHHHHHHHHHHHHHHHHhcccceEeeccccchhheeeeeeEEeehhhhheeeecchhhhhccCc
Confidence 2345667778888889999999999999886 9999999999999999998887661 112345899
Q ss_pred hHHHHHHHHhc-ChhHHHH
Q 038052 190 RVSAWVADITA-RPAWTKV 207 (225)
Q Consensus 190 ~L~~~~~~~~~-~p~~~~~ 207 (225)
+|..|.+++.. .|.++.+
T Consensus 267 ~l~~~lk~iY~~~~~~~~T 285 (319)
T KOG2903|consen 267 NLHNWLKNIYWNIPGFSST 285 (319)
T ss_pred HHHHHHHHHHhhccchhhc
Confidence 99999999999 7888765
No 76
>cd03191 GST_C_Zeta GST_C family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates, but display modest GSH peroxidase activity. They are also implicated in the detoxification of th
Probab=99.57 E-value=3.4e-14 Score=98.21 Aligned_cols=116 Identities=16% Similarity=0.182 Sum_probs=85.6
Q ss_pred ccchHHHHHHHHHhhhcchhHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHhhc--CCCccccCCccHhhhh
Q 038052 91 KPSSSFLIWKEVEAHQFDPVASKLTWEIVLKPMFGMTIDPTMVEEYKAKLAKVLDVYEARLT--KSKYLASDSFTLVDMH 168 (225)
Q Consensus 91 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~--~~~~l~G~~~t~aD~~ 168 (225)
.+++++++|+.+.++.+...+........... .+. ..+...+...+.+.+.|..+|++|+ +++|++|+++|+|||+
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ADi~ 79 (121)
T cd03191 2 KKRARVRALALIIACDIHPLNNLRVLKYLTEE-LGL-DEEAKNAWYRHWIARGFAALEKLLAQTAGKFCFGDEPTLADIC 79 (121)
T ss_pred hhHHHHHHHHHHHHccCCccccHHHHHHHHHh-cCC-CHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecCCcCCHHHHH
Confidence 36889999999999888876433332221110 011 1233344556778999999999998 4579999999999999
Q ss_pred hhhHHHHHHhhhhhhhhccCchHHHHHHHHhcChhHHHHHhh
Q 038052 169 HLPTINLLMRTQVKQLFNARPRVSAWVADITARPAWTKVLAM 210 (225)
Q Consensus 169 l~~~l~~~~~~~~~~~~~~~p~L~~~~~~~~~~p~~~~~~~~ 210 (225)
+++.+.+....+. ..+.+|+|.+|++++.++|+++++++.
T Consensus 80 ~~~~~~~~~~~~~--~~~~~p~l~~w~~~~~~~p~~~~~~~~ 119 (121)
T cd03191 80 LVPQVYNARRFGV--DLSPYPTIARINEACLELPAFQAAHPD 119 (121)
T ss_pred HHHHHHHHHHhCC--CcccCcHHHHHHHHHHhChhHHHhCcC
Confidence 9999887654322 257899999999999999999998764
No 77
>cd03182 GST_C_GTT2_like GST_C family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensiti
Probab=99.56 E-value=3.2e-14 Score=97.75 Aligned_cols=113 Identities=19% Similarity=0.234 Sum_probs=87.0
Q ss_pred ccchHHHHHHHHHhhhcchhHHHHHHHHHH-hccC-CCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCccHhhhh
Q 038052 91 KPSSSFLIWKEVEAHQFDPVASKLTWEIVL-KPMF-GMTIDPTMVEEYKAKLAKVLDVYEARLTKSKYLASDSFTLVDMH 168 (225)
Q Consensus 91 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~ 168 (225)
.+++.+++|+.+.+..+...+...+..... .+.. ....++...+....++.+.|..+|+.|++++|++|+++|+||++
T Consensus 3 ~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~gd~~t~aDi~ 82 (117)
T cd03182 3 LERAQIEMWQRRAELQGLYPIGQAFRHATPGLKPPDREEQVPEWGERSKARAADFLAYLDTRLAGSPYVAGDRFTIADIT 82 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCccccccCHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHH
Confidence 468899999999888877665544322110 0000 12345667788889999999999999998899999999999999
Q ss_pred hhhHHHHHHhhhhhhhhccCchHHHHHHHHhcChhH
Q 038052 169 HLPTINLLMRTQVKQLFNARPRVSAWVADITARPAW 204 (225)
Q Consensus 169 l~~~l~~~~~~~~~~~~~~~p~L~~~~~~~~~~p~~ 204 (225)
+++.+.++...+. .....+|+|.+|++++.++|++
T Consensus 83 l~~~~~~~~~~~~-~~~~~~p~l~~w~~~~~~~p~~ 117 (117)
T cd03182 83 AFVGLDFAKVVKL-RVPEELTHLRAWYDRMAARPSA 117 (117)
T ss_pred HHHHhHHHHhcCC-CCccccHHHHHHHHHHHhccCC
Confidence 9999988766532 2346899999999999999974
No 78
>cd03210 GST_C_Pi GST_C family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an incre
Probab=99.54 E-value=1e-13 Score=96.53 Aligned_cols=86 Identities=20% Similarity=0.365 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcC---CCccccCCccHhhhhhhhHHHHHHhhhhhhhhccCchHHHHHHHHhcChhHHHH
Q 038052 131 TMVEEYKAKLAKVLDVYEARLTK---SKYLASDSFTLVDMHHLPTINLLMRTQVKQLFNARPRVSAWVADITARPAWTKV 207 (225)
Q Consensus 131 ~~~~~~~~~l~~~l~~le~~L~~---~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~p~L~~~~~~~~~~p~~~~~ 207 (225)
...+...+.+.+.|..||+.|++ ++|++|+++|+||+++++.+.++.... ....+.+|+|.+|++++.++|+++++
T Consensus 31 ~~~~~~~~~~~~~l~~le~~L~~~~~~~~l~G~~~T~ADi~l~~~~~~~~~~~-~~~~~~~P~l~~~~~rv~~~p~v~~~ 109 (126)
T cd03210 31 AGKDDYIKDLPEQLKPFEKLLSKNNGKGFIVGDKISFADYNLFDLLDIHLVLA-PGCLDAFPLLKAFVERLSARPKLKAY 109 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCeeeCCCccHHHHHHHHHHHHHHHhC-hHhhhcChHHHHHHHHHHhCcHHHHH
Confidence 34456677789999999999974 589999999999999999998876542 23468999999999999999999999
Q ss_pred HhhccCCccc
Q 038052 208 LAMQKVNFYP 217 (225)
Q Consensus 208 ~~~~~~~~~p 217 (225)
++.....-.|
T Consensus 110 ~~~~~~~~~~ 119 (126)
T cd03210 110 LESDAFKNRP 119 (126)
T ss_pred HhCcCCCCCC
Confidence 9988764443
No 79
>cd03208 GST_C_Alpha GST_C family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Alpha subfamily is composed of vertebrate GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GS
Probab=99.53 E-value=6.2e-14 Score=98.87 Aligned_cols=79 Identities=19% Similarity=0.278 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHhhc--CCCccccCCccHhhhhhhhHHHHHHhhhhhhhhccCchHHHHHHHHhcChhHHHHHhhc
Q 038052 134 EEYKAKLAKVLDVYEARLT--KSKYLASDSFTLVDMHHLPTINLLMRTQVKQLFNARPRVSAWVADITARPAWTKVLAMQ 211 (225)
Q Consensus 134 ~~~~~~l~~~l~~le~~L~--~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~p~L~~~~~~~~~~p~~~~~~~~~ 211 (225)
+...+.+.+.|..||+.|+ +++|++|+++|+||+++++.+.++.... ...+..+|+|.+|++++.++|+++++++..
T Consensus 38 ~~~~~~~~~~l~~lE~~L~~~~~~~l~G~~~T~ADi~l~~~l~~~~~~~-~~~l~~~P~l~~~~~rv~~~P~vk~~~~~~ 116 (137)
T cd03208 38 LIKEKAKNRYFPVFEKVLKSHGQDFLVGNKLSRADIHLLEAILMVEELD-PSLLSDFPLLQAFKTRISNLPTIKKFLQPG 116 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCeeeCCCCCHHHHHHHHHHHHHHHhc-hhhhccChHHHHHHHHHHcCHHHHHHHhcC
Confidence 4444567899999999998 6789999999999999999998876542 235689999999999999999999999976
Q ss_pred cC
Q 038052 212 KV 213 (225)
Q Consensus 212 ~~ 213 (225)
..
T Consensus 117 ~~ 118 (137)
T cd03208 117 SP 118 (137)
T ss_pred CC
Confidence 64
No 80
>cd03184 GST_C_Omega GST_C family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a re
Probab=99.53 E-value=5.8e-14 Score=97.48 Aligned_cols=108 Identities=22% Similarity=0.258 Sum_probs=82.4
Q ss_pred cchHHHHHHHHHhhhcchhHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcC--CCccccCCccHhhhhh
Q 038052 92 PSSSFLIWKEVEAHQFDPVASKLTWEIVLKPMFGMTIDPTMVEEYKAKLAKVLDVYEARLTK--SKYLASDSFTLVDMHH 169 (225)
Q Consensus 92 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~--~~~l~G~~~t~aD~~l 169 (225)
++|+.+.|+++++..+.. +...+. . ++..+...+.+.+.|+.+|+.|++ ++|++|+++|+||+++
T Consensus 2 ~ra~~r~~~~~~~~~~~~-~~~~~~---------~---~~~~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~ 68 (124)
T cd03184 2 EKAQQKLLLERFSKVVSA-FYKLLG---------A---PSDREEKKAELRSALENLEEELTKRGTPFFGGDSPGMVDYMI 68 (124)
T ss_pred hHHHHHHHHHHHhhhhHH-HHHHHh---------c---cccchhhHHHHHHHHHHHHHHHHhcCCCCcCCCCccHHHHHh
Confidence 578888999887633322 222221 1 233356777889999999999985 7999999999999999
Q ss_pred hhHHHHHHhhhhh----hhhccCchHHHHHHHHhcChhHHHHHhhcc
Q 038052 170 LPTINLLMRTQVK----QLFNARPRVSAWVADITARPAWTKVLAMQK 212 (225)
Q Consensus 170 ~~~l~~~~~~~~~----~~~~~~p~L~~~~~~~~~~p~~~~~~~~~~ 212 (225)
++.+.++...+.. ...+.+|+|.+|+++|.++|++++++....
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~r~~~~p~v~~~~~~~~ 115 (124)
T cd03184 69 WPWFERLEALKLLLGYEFPLDRFPKLKKWMDAMKEDPAVQAFYTDTE 115 (124)
T ss_pred hHHHHHHHHHHhhccccCCcccChHHHHHHHHhccChHHHHHhCCHH
Confidence 9999887655321 236789999999999999999999988754
No 81
>cd03207 GST_C_8 GST_C family, unknown subfamily 8; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.51 E-value=4.5e-14 Score=94.77 Aligned_cols=76 Identities=28% Similarity=0.379 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccccCCccHhhhhhhhHHHHHHhhhhhhhhccCchHHHHHHHHhcChhHHHHHhh
Q 038052 132 MVEEYKAKLAKVLDVYEARLTKSKYLASDSFTLVDMHHLPTINLLMRTQVKQLFNARPRVSAWVADITARPAWTKVLAM 210 (225)
Q Consensus 132 ~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~p~L~~~~~~~~~~p~~~~~~~~ 210 (225)
..+...+++.+.++.+|++|++++|++|+++|+|||++++.+.+....+ ..+.+|+|.+|++++.++|+++++++.
T Consensus 27 ~~~~~~~~~~~~l~~le~~l~~~~~l~g~~~t~aDi~~~~~~~~~~~~~---~~~~~p~l~~w~~~~~~~p~~~~~~~~ 102 (103)
T cd03207 27 ARMAGFGSYDDVLAALEQALAKGPYLLGERFTAADVLVGSPLGWGLQFG---LLPERPAFDAYIARITDRPAFQRAAAI 102 (103)
T ss_pred hhhhhhhhHHHHHHHHHHHHccCCcccCCccCHHHHHHHHHHHHHHHcC---CCCCChHHHHHHHHHHcCHHHHHHhcc
Confidence 3566678899999999999999999999999999999999998876542 357899999999999999999998764
No 82
>cd03198 GST_C_CLIC GST_C family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin, and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. T
Probab=99.50 E-value=1.7e-13 Score=95.11 Aligned_cols=86 Identities=19% Similarity=0.309 Sum_probs=71.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhcC----------------CCccccCCccHhhhhhhhHHHHHHhhh----hhhhhc
Q 038052 127 TIDPTMVEEYKAKLAKVLDVYEARLTK----------------SKYLASDSFTLVDMHHLPTINLLMRTQ----VKQLFN 186 (225)
Q Consensus 127 ~~~~~~~~~~~~~l~~~l~~le~~L~~----------------~~~l~G~~~t~aD~~l~~~l~~~~~~~----~~~~~~ 186 (225)
..+++..+...+++...|..||.+|++ ++|++|+++|+|||++++.+.++..+. .....+
T Consensus 21 ~~~~~~~e~~~~~l~~~L~~ld~~L~~~~~~~~~~~~~~~~~~~~fL~Gd~fTlADi~l~p~L~~~~~~~~~~~g~~i~~ 100 (134)
T cd03198 21 NSNPALNENLEKGLLKALKKLDDYLNSPLPDEIDSAEDEGVSQRKFLDGDELTLADCNLLPKLHIVKVVAKKYRNFEIPA 100 (134)
T ss_pred CCChhhhHHHHHHHHHHHHHHHHHHccCccccccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCccc
Confidence 345566788889999999999999986 679999999999999999998775431 112247
Q ss_pred cCchHHHHHHHHhcChhHHHHHhhcc
Q 038052 187 ARPRVSAWVADITARPAWTKVLAMQK 212 (225)
Q Consensus 187 ~~p~L~~~~~~~~~~p~~~~~~~~~~ 212 (225)
.+|+|.+|++++.+||+|++++....
T Consensus 101 ~~P~L~aw~~ri~aRPsfk~t~~~~~ 126 (134)
T cd03198 101 DLTGLWRYLKNAYQREEFTNTCPADQ 126 (134)
T ss_pred cCHHHHHHHHHHHCCHHHHHHcCCHH
Confidence 89999999999999999999877653
No 83
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=99.48 E-value=2.1e-13 Score=90.07 Aligned_cols=73 Identities=34% Similarity=0.623 Sum_probs=64.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCccHhhhhhhhHHHHHHhhhhhhhh-ccCchHHHHHHHHhcCh
Q 038052 129 DPTMVEEYKAKLAKVLDVYEARLTKSKYLASDSFTLVDMHHLPTINLLMRTQVKQLF-NARPRVSAWVADITARP 202 (225)
Q Consensus 129 ~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~-~~~p~L~~~~~~~~~~p 202 (225)
.++..+...+.+.+.|+.+|+.|++++|++|+++|+||+++++.+.++..... ... +++|+|.+|++++.+||
T Consensus 22 ~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~ADi~~~~~~~~~~~~~~-~~~~~~~P~l~~w~~~~~~~P 95 (95)
T PF00043_consen 22 DEEMVEEARAKVPRYLEVLEKRLKGGPYLVGDKLTIADIALFPMLDWLERLGP-DFLFEKFPKLKKWYERMFARP 95 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSSSSBSS-CHHHHHHHHHHHHHHHHTT-TTTHTTSHHHHHHHHHHHTSH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHcCCCeeeccCCchhHHHHHHHHHHHHHhCC-CcccccCHHHHHHHHHHHcCC
Confidence 34567788889999999999999999999999999999999999999888743 334 89999999999999998
No 84
>cd03179 GST_C_1 GST_C family, unknown subfamily 1; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.44 E-value=2.2e-13 Score=91.62 Aligned_cols=104 Identities=20% Similarity=0.296 Sum_probs=80.8
Q ss_pred cchHHHHHHHHHhhhcchhHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCccHhhhhhhh
Q 038052 92 PSSSFLIWKEVEAHQFDPVASKLTWEIVLKPMFGMTIDPTMVEEYKAKLAKVLDVYEARLTKSKYLASDSFTLVDMHHLP 171 (225)
Q Consensus 92 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~ 171 (225)
+++++++|+.+.++.+...+........+.+ ....+++..+...+++.+.++.+|+.|++++|++|+++|+||+++++
T Consensus 2 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~g~~~slaDi~~~~ 79 (105)
T cd03179 2 ERAQVLRWLFFEQYSHEPYIATLRFLRVYLG--LGEADAEVLAFLRERGHAALAVLEAHLAGRDFLVGDALTIADIALAA 79 (105)
T ss_pred cHHHHHHHHHHhhcccCccceeeeeeEeecc--CCCCCHHHHHHHHHHHHHHHHHHHHHHccCccccCCCCCHHHHHHHH
Confidence 6789999999988887766544332211111 23455667778899999999999999998899999999999999999
Q ss_pred HHHHHHhhhhhhhhccCchHHHHHHHHh
Q 038052 172 TINLLMRTQVKQLFNARPRVSAWVADIT 199 (225)
Q Consensus 172 ~l~~~~~~~~~~~~~~~p~L~~~~~~~~ 199 (225)
.+.++...+.. ..++|+|.+|++++.
T Consensus 80 ~~~~~~~~~~~--~~~~p~l~~~~~~~~ 105 (105)
T cd03179 80 YTHVADEGGFD--LADYPAIRAWLARIE 105 (105)
T ss_pred HHHhccccCCC--hHhCccHHHHHHhhC
Confidence 99987654322 578999999999873
No 85
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.43 E-value=6.5e-13 Score=82.39 Aligned_cols=60 Identities=25% Similarity=0.287 Sum_probs=49.7
Q ss_pred CCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCEEeeehHHHHHHHHHh
Q 038052 10 AMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQKIFESRAITQYIAME 78 (225)
Q Consensus 10 ~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~l~eS~aI~~yL~~~ 78 (225)
+.+++|.|++++|++.|+||+.+.... ++ ..+|.|+||+|++||.+++||.||+.||.++
T Consensus 15 ~~~~~~~kv~~~L~elglpye~~~~~~--~~-------~~~P~GkVP~L~~dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFNVRCRAN--AE-------FMSPSGKVPFIRVGNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcEEEecCC--cc-------ccCCCCcccEEEECCEEEeCHHHHHHHHhcC
Confidence 356789999999999999999873221 11 1578899999999999999999999999863
No 86
>cd03204 GST_C_GDAP1 GST_C family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal thioredoxin-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.42 E-value=8.3e-13 Score=88.90 Aligned_cols=79 Identities=23% Similarity=0.315 Sum_probs=67.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhcCC----------CccccCCccHhhhhhhhHHHHHHhhhhhhh---hccCchHH
Q 038052 126 MTIDPTMVEEYKAKLAKVLDVYEARLTKS----------KYLASDSFTLVDMHHLPTINLLMRTQVKQL---FNARPRVS 192 (225)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~l~~le~~L~~~----------~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~---~~~~p~L~ 192 (225)
.+.+.+..+....++.+.|+.+|++|+++ +|++|+++|+|||++++.+.++...+.... ...+|+|.
T Consensus 20 ~~~~~~~i~~~~~~l~~~l~~LE~~L~~~~~~~~~~~~~~yL~Gd~~TlADi~l~~~l~~~~~~~~~~~~~~~~~~P~l~ 99 (111)
T cd03204 20 DHDNVEYLKKILDELEMVLDQVEQELQRRKEETEEQKCQLWLCGDTFTLADISLGVTLHRLKFLGLSRRYWGNGKRPNLE 99 (111)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCCCccCCCCCCHHHHHHHHHHHHHHHcCccccccccccChHHH
Confidence 46677888899999999999999999765 499999999999999999999876532211 36899999
Q ss_pred HHHHHHhcChhH
Q 038052 193 AWVADITARPAW 204 (225)
Q Consensus 193 ~~~~~~~~~p~~ 204 (225)
+|++++.+||+|
T Consensus 100 ~w~~rv~aRpsf 111 (111)
T cd03204 100 AYFERVLQRESF 111 (111)
T ss_pred HHHHHHHcCCCC
Confidence 999999999975
No 87
>cd03206 GST_C_7 GST_C family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.42 E-value=1.1e-12 Score=87.56 Aligned_cols=99 Identities=22% Similarity=0.320 Sum_probs=72.7
Q ss_pred HHHHHHHhhhcchhHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCccHhhhhhhhHHHHH
Q 038052 97 LIWKEVEAHQFDPVASKLTWEIVLKPMFGMTIDPTMVEEYKAKLAKVLDVYEARLTKSKYLASDSFTLVDMHHLPTINLL 176 (225)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~ 176 (225)
++|+.+..+.+............. . .....+....++.+.++.+|++|++++|++|+++|+||+++++.+.+.
T Consensus 2 ~~w~~~~~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~~~~~~~~~ 74 (100)
T cd03206 2 QRWLSVAAGEIANGPAAARLITLF-----G--APLDKETAIARAHRLLRLLEEHLAGRDWLAGDRPTIADVAVYPYVALA 74 (100)
T ss_pred ceehhhhhhhcccchhHHHHHHHh-----C--CHhHHHHHHHHHHHHHHHHHHHHccCCccCCCCCCHHHHHHHHHHHHH
Confidence 467777777776443333222111 1 112345678889999999999999999999999999999999988764
Q ss_pred HhhhhhhhhccCchHHHHHHHHhcChhH
Q 038052 177 MRTQVKQLFNARPRVSAWVADITARPAW 204 (225)
Q Consensus 177 ~~~~~~~~~~~~p~L~~~~~~~~~~p~~ 204 (225)
.... ...+.+|+|.+|++++.++|++
T Consensus 75 ~~~~--~~~~~~p~l~~~~~~~~~~p~~ 100 (100)
T cd03206 75 PEGG--VDLEDYPAIRRWLARIEALPGF 100 (100)
T ss_pred hccC--CChhhCcHHHHHHHHHHhCcCC
Confidence 4322 2357899999999999999975
No 88
>cd03195 GST_C_4 GST_C family, unknown subfamily 4; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.42 E-value=1.2e-12 Score=89.43 Aligned_cols=111 Identities=17% Similarity=0.152 Sum_probs=81.5
Q ss_pred ccchHHHHHHHHHhhhcchhHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHhhc-CCCccccCCccHhhhhh
Q 038052 91 KPSSSFLIWKEVEAHQFDPVASKLTWEIVLKPMFGMTIDPTMVEEYKAKLAKVLDVYEARLT-KSKYLASDSFTLVDMHH 169 (225)
Q Consensus 91 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~-~~~~l~G~~~t~aD~~l 169 (225)
.++++++.|+.++.+.+.......... ..+.....+...+...+.+.+.+..+|.+|+ +++|++| ++|+||+++
T Consensus 2 ~~ra~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~l~G-~fSiAD~~l 76 (114)
T cd03195 2 RQRARARQVQAWLRSDLLPIRVERSTE----VVFAGAKAEPLSEAAQAAAEKLIAVAEALLPPGAANLFG-EWCIADTDL 76 (114)
T ss_pred HhhHHHHHHHHHHHhhHHHHHHhCCcc----ceecCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCcccC-CccHHHHHH
Confidence 368899999999998887652111101 1011111113345667778899999999995 5489999 599999999
Q ss_pred hhHHHHHHhhhhhhhhccCchHHHHHHHHhcChhHHHHHhh
Q 038052 170 LPTINLLMRTQVKQLFNARPRVSAWVADITARPAWTKVLAM 210 (225)
Q Consensus 170 ~~~l~~~~~~~~~~~~~~~p~L~~~~~~~~~~p~~~~~~~~ 210 (225)
++.+.+....+.. ++ |++.+|.+++.+||+++++++.
T Consensus 77 ~~~~~~~~~~g~~--l~--p~l~ay~~r~~~rPa~~~~~~~ 113 (114)
T cd03195 77 ALMLNRLVLNGDP--VP--ERLRDYARRQWQRPSVQAWLAL 113 (114)
T ss_pred HHHHHHHHHcCCC--CC--HHHHHHHHHHHCCHHHHHHHhc
Confidence 9999998877542 23 9999999999999999998864
No 89
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=99.41 E-value=1.1e-12 Score=81.26 Aligned_cols=67 Identities=28% Similarity=0.391 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCccccCCccHhhhhhhhHHHHHHhhhh-hhhhccCchHHHHHHH
Q 038052 131 TMVEEYKAKLAKVLDVYEARLTKSKYLASDSFTLVDMHHLPTINLLMRTQV-KQLFNARPRVSAWVAD 197 (225)
Q Consensus 131 ~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~-~~~~~~~p~L~~~~~~ 197 (225)
...+...+++.+.|+.||++|++++|++|+++|+||+++++.+.++..... ....+.+|+|.+|++|
T Consensus 2 ~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~~~p~l~~w~~r 69 (69)
T PF13410_consen 2 AAVERARAQLEAALDALEDHLADGPFLFGDRPSLADIALAPFLWRLRFVGPDFDLLEAYPNLRAWYER 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSBTTBSS--HHHHHHHHHHHHHHHCTHTCCHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhCcCcCccccCHHHHHHHhC
Confidence 456788999999999999999999999999999999999999999998843 2356899999999986
No 90
>cd03203 GST_C_Lambda GST_C family, Class Lambda subfamily; composed of plant-specific class Lambda GSTs. GSTs are cytosolic, usually dimeric, proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Lambda subfamily was recently discovered, together with dehydroascorbate reductases (DHARs), as two outlying groups of the GST superfamily in Arabidopsis thaliana, which contain conserved active site cysteines. Characterization of recombinant A. thaliana proteins show that Lambda class GSTs are monomeric, similar
Probab=99.40 E-value=1.8e-12 Score=89.36 Aligned_cols=71 Identities=24% Similarity=0.413 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhhc---CCCccccCCccHhhhhhhhHHHHHHhh----hhhhhhccCchHHHHHHHHhcChhHHHHHhhc
Q 038052 140 LAKVLDVYEARLT---KSKYLASDSFTLVDMHHLPTINLLMRT----QVKQLFNARPRVSAWVADITARPAWTKVLAMQ 211 (225)
Q Consensus 140 l~~~l~~le~~L~---~~~~l~G~~~t~aD~~l~~~l~~~~~~----~~~~~~~~~p~L~~~~~~~~~~p~~~~~~~~~ 211 (225)
+.+.++.||+.|+ +++|++| ++|+||+++++.+.++... ......+++|+|.+|+++|.++|+++++....
T Consensus 35 ~~~~l~~Le~~L~~~~~~~fl~G-~~tlADi~l~~~~~~~~~~~~~~~~~~~~~~~P~l~~W~~~~~~rp~~~~~~~~~ 112 (120)
T cd03203 35 AAAALDYIENALSKFDDGPFFLG-QFSLVDIAYVPFIERFQIFLSELFNYDITEGRPNLAAWIEEMNKIEAYTQTKQDP 112 (120)
T ss_pred HHHHHHHHHHHHHhcCCCCCcCC-CccHHHHHHHHHHHHHHHHHHHhcCccccccCcHHHHHHHHHhcchHHHhHcCCH
Confidence 3556777777776 4799999 9999999999999876531 11223468999999999999999999998754
No 91
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=4.7e-11 Score=91.98 Aligned_cols=179 Identities=15% Similarity=0.190 Sum_probs=128.1
Q ss_pred CChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEe-CCEEeeehHHHHHHHHHhCCCCCCCCCCC
Q 038052 11 MSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEH-GGQKIFESRAITQYIAMEYPEKGTRLASA 89 (225)
Q Consensus 11 ~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~-~~~~l~eS~aI~~yL~~~~~~~~~~l~p~ 89 (225)
.++-|.++.++++.++-|.++...+.. + .+|.|++|+|+. +|..+.+-.-|..||......- .+-+.
T Consensus 16 id~~sL~~l~y~kl~~~~l~v~~ssN~-------~---~s~sg~LP~l~~~ng~~va~~~~iv~~L~k~~~ky--~~d~d 83 (313)
T KOG3028|consen 16 IDPDSLAALIYLKLAGAPLKVVVSSNP-------W---RSPSGKLPYLITDNGTKVAGPVKIVQFLKKNTKKY--NLDAD 83 (313)
T ss_pred cChhHHHHHHHHHHhCCCceeEeecCC-------C---CCCCCCCCeEEecCCceeccHHHHHHHHHHhcccC--CcCcc
Confidence 568899999999999977666654432 2 578999999995 5699999999999999842210 11111
Q ss_pred -C-ccchHHHHHHHHHhhhcchhHHHHHHHH----------HHhcc--C--------------------CCCCCHHHHHH
Q 038052 90 -D-KPSSSFLIWKEVEAHQFDPVASKLTWEI----------VLKPM--F--------------------GMTIDPTMVEE 135 (225)
Q Consensus 90 -~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~--~--------------------~~~~~~~~~~~ 135 (225)
. .+.+....|+.++...+..++...++-. |+... + ..+...+..+.
T Consensus 84 l~~kq~a~~~a~~sll~~~l~~a~~~t~~v~~~Ny~e~Tkk~yak~l~fP~n~~~p~~l~~qAk~rl~l~~g~~~~~e~~ 163 (313)
T KOG3028|consen 84 LSAKQLADTLAFMSLLEENLEPALLYTFWVDTENYNEVTKKWYAKALPFPLNYILPGKLQRQAKERLQLTLGELTEREDQ 163 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHhHHHHHhcCCCchhhcchhhhHHHHHHHHHHHhCCchhhHHH
Confidence 2 6778888899988888877766555511 11100 0 01122233455
Q ss_pred HHHHHHHHHHHHHHhhcCCCccccCCccHhhhhhhhHHHHHHhhhhh-----hhhccCchHHHHHHHHhcC
Q 038052 136 YKAKLAKVLDVYEARLTKSKYLASDSFTLVDMHHLPTINLLMRTQVK-----QLFNARPRVSAWVADITAR 201 (225)
Q Consensus 136 ~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~-----~~~~~~p~L~~~~~~~~~~ 201 (225)
......+.++.|+++|++++|++||+||--|+.++..+..+.....+ ..+..++||.++.+++.+.
T Consensus 164 i~~~Aska~~~LS~~Lgs~kffFgd~psslDa~lfs~la~~~~~~Lp~~~Lq~~l~~~~NL~~~~~~i~s~ 234 (313)
T KOG3028|consen 164 IYKDASKALNLLSTLLGSKKFFFGDKPSSLDALLFSYLAILLQVALPNDSLQVHLLAHKNLVRYVERIRSL 234 (313)
T ss_pred HHHHHHHHHHHHHHHhcCceEeeCCCCchHHHHHHHHHHHHHhccCCchhHHHHHHhcchHHHHHHHHHHH
Confidence 56667899999999999999999999999999999999996554211 2344599999999998863
No 92
>cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene. Human JTV-1, a gene of unknown function, initiates within the human PMS2 gene promoter, but is transcribed from the opposite strand. PMS2 encodes a protein involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer. It is unknown whether the expression of JTV-1 affects that of PMS2, or vice versa, as a result of their juxtaposition. JTV-1 is up-regulated while PMS2 is down-regulated in tumor cell spheroids that show increased resistance to anticancer cytotoxic drugs compared with tumor cell monolayers indicating that suppressed DNA mismatch repair may be a mechanism for multicellular resistance to alkylating agents.
Probab=99.40 E-value=1.3e-12 Score=86.29 Aligned_cols=94 Identities=16% Similarity=0.237 Sum_probs=73.0
Q ss_pred HHHHHHhCCCCCCCCCCCC-ccchHHHHHHHHHhhhcchhHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 038052 72 TQYIAMEYPEKGTRLASAD-KPSSSFLIWKEVEAHQFDPVASKLTWEIVLKPMFGMTIDPTMVEEYKAKLAKVLDVYEAR 150 (225)
Q Consensus 72 ~~yL~~~~~~~~~~l~p~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~ 150 (225)
++||++.. .++|++ .+.+.+++|++.....+.. ...+.+.+.++.+|++
T Consensus 1 ~r~~~~~~-----~~~~~~~~~~~~vd~~~d~~~~~l~~-------------------------~~~~~~~~~l~~le~~ 50 (96)
T cd03200 1 ARFLYRLL-----GPAPNAPNAATNIDSWVDTAIFQLAE-------------------------GSSKEKAAVLRALNSA 50 (96)
T ss_pred CchHHHHh-----cccCCCchHHHHHHHHHHHHHHHHhc-------------------------CCHHHHHHHHHHHHHH
Confidence 47888882 488989 9999999999865433310 1234455788899999
Q ss_pred hcCCCccccCCccHhhhhhhhHHHHHHhhhhhhhhccCchHHHHHHHHhc
Q 038052 151 LTKSKYLASDSFTLVDMHHLPTINLLMRTQVKQLFNARPRVSAWVADITA 200 (225)
Q Consensus 151 L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~p~L~~~~~~~~~ 200 (225)
|++++|++|+++|+|||++++.+.+. + ...+.+|+|.+|++++.+
T Consensus 51 L~~~~fl~Gd~~tiADi~l~~~l~~~---~--~~~~~~p~l~~w~~r~~~ 95 (96)
T cd03200 51 LGRSPWLVGSEFTVADIVSWCALLQT---G--LASAAPANVQRWLKSCEN 95 (96)
T ss_pred HcCCCccCCCCCCHHHHHHHHHHHHc---c--cccccChHHHHHHHHHHh
Confidence 99999999999999999999887643 1 124689999999999975
No 93
>cd03194 GST_C_3 GST_C family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.38 E-value=5.8e-12 Score=86.00 Aligned_cols=107 Identities=19% Similarity=0.288 Sum_probs=68.0
Q ss_pred HHHHHHHhhhcchhHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHhh---cCCCccccCCccHhhhhhhhHH
Q 038052 97 LIWKEVEAHQFDPVASKLTWEIVLKPMFGMTIDPTMVEEYKAKLAKVLDVYEARL---TKSKYLASDSFTLVDMHHLPTI 173 (225)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L---~~~~~l~G~~~t~aD~~l~~~l 173 (225)
+.|..+.++.+...+...+.........+ ...+...+...+.+.+.+..+|..+ ++++|++|+ +|+||+++++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~yl~Gd-~T~ADi~l~~~~ 81 (114)
T cd03194 4 RAWARSAAAEMHSGFAALRSECPMNLRAR-VPGFELSEAVQADIARIEAIWAECLARFQGGPFLFGD-FSIADAFFAPVV 81 (114)
T ss_pred hHHHHHHHHHHHCcHHHHHHhCCCCcccC-CCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CcHHHHHHHHHH
Confidence 44445555666655555544322221111 1111222344444455555555554 567899999 999999999999
Q ss_pred HHHHhhhhhhhhccCchHHHHHHHHhcChhHHHHHh
Q 038052 174 NLLMRTQVKQLFNARPRVSAWVADITARPAWTKVLA 209 (225)
Q Consensus 174 ~~~~~~~~~~~~~~~p~L~~~~~~~~~~p~~~~~~~ 209 (225)
.+....+. +..|+|.+|++++.++|+++++++
T Consensus 82 ~~~~~~~~----~~~P~l~~~~~rv~~rPsv~~~~~ 113 (114)
T cd03194 82 TRFRTYGL----PLSPAAQAYVDALLAHPAMQEWIA 113 (114)
T ss_pred HHHHHcCC----CCCHHHHHHHHHHHCCHHHHHHHh
Confidence 88865432 223999999999999999999876
No 94
>cd03201 GST_C_DHAR GST_C family, Dehydroascorbate Reductase (DHAR) subfamily; composed of plant-specific DHARs, monomeric enzymes catalyzing the reduction of DHA into ascorbic acid (AsA) using glutathione as the reductant. DHAR allows plants to recycle oxidized AsA before it is lost. AsA serves as a cofactor of violaxanthin de-epoxidase in the xanthophyll cycle and as an antioxidant in the detoxification of reactive oxygen species. Because AsA is the major reductant in plants, DHAR serves to regulate their redox state. It has been suggested that a significant portion of DHAR activity is plastidic, acting to reduce the large amounts of ascorbate oxidized during hydrogen peroxide scavenging by ascorbate peroxidase. DHAR contains a conserved cysteine in its active site and in addition to its reductase activity, shows thiol transferase activity similar to glutaredoxins.
Probab=99.36 E-value=4.1e-12 Score=87.58 Aligned_cols=79 Identities=15% Similarity=0.257 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHhhcC-CCccccCCccHhhhhhhhHHHHHHhh-h---hhhhhccCchHHHHHHHHhcChhHHHHH
Q 038052 134 EEYKAKLAKVLDVYEARLTK-SKYLASDSFTLVDMHHLPTINLLMRT-Q---VKQLFNARPRVSAWVADITARPAWTKVL 208 (225)
Q Consensus 134 ~~~~~~l~~~l~~le~~L~~-~~~l~G~~~t~aD~~l~~~l~~~~~~-~---~~~~~~~~p~L~~~~~~~~~~p~~~~~~ 208 (225)
+...+.+.+.|..||+.|++ ++|++||++|+||+++++.+.++... + .....+.+|+|.+|++++.+||++++++
T Consensus 29 ~~~~~~l~~~l~~Le~~L~~~~~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~~~~~P~l~~w~~rl~~rps~~~t~ 108 (121)
T cd03201 29 DGTEQALLDELEALEDHLKENGPFINGEKISAVDLSLAPKLYHLEIALGHYKNWSVPESLTSVKSYMKALFSRESFVKTK 108 (121)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCccCCCCCCHHhHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHCCchhhhcC
Confidence 44566788999999999985 79999999999999999988777643 1 1113479999999999999999999987
Q ss_pred hhcc
Q 038052 209 AMQK 212 (225)
Q Consensus 209 ~~~~ 212 (225)
....
T Consensus 109 ~~~~ 112 (121)
T cd03201 109 AEKE 112 (121)
T ss_pred CCHH
Confidence 7543
No 95
>PRK10638 glutaredoxin 3; Provisional
Probab=99.28 E-value=2.3e-11 Score=78.14 Aligned_cols=75 Identities=20% Similarity=0.213 Sum_probs=65.0
Q ss_pred CcceEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCEEeeehHHHHHHHHH
Q 038052 1 MGVIKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQKIFESRAITQYIAM 77 (225)
Q Consensus 1 m~~~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~l~eS~aI~~yL~~ 77 (225)
|+++++|..+.||+|.+++.+|+.+|++|+.+.++... ...+++.+.+|.+++|++..+|..+.+...+..+-.+
T Consensus 1 m~~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~--~~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~~ 75 (83)
T PRK10638 1 MANVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDA--AKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDAR 75 (83)
T ss_pred CCcEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCH--HHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHHc
Confidence 88899999999999999999999999999999887532 2346788899999999999999999999888776543
No 96
>cd00299 GST_C_family Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an activ
Probab=99.28 E-value=1.5e-11 Score=81.54 Aligned_cols=98 Identities=29% Similarity=0.471 Sum_probs=74.4
Q ss_pred HHHHHHHhhhcchhHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCccHhhhhhhhHHHHH
Q 038052 97 LIWKEVEAHQFDPVASKLTWEIVLKPMFGMTIDPTMVEEYKAKLAKVLDVYEARLTKSKYLASDSFTLVDMHHLPTINLL 176 (225)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~ 176 (225)
+.|+.+.+..+...+........ ......++..+...+++.+.++.||++|++++|++|+++|+||+++++.+.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~t~aDi~~~~~l~~~ 77 (100)
T cd00299 2 RAWEEWADTTLEPAARRLLLLAF----VGPEVDEAALEEAREELAAALAALEKLLAGRPYLAGDRFSLADIALAPVLARL 77 (100)
T ss_pred hHHHHHHHhhcCCcccceeeeec----cCCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCcCHHHHHHHHHHHHH
Confidence 46777777767665555443211 11123466677888899999999999999999999999999999999999998
Q ss_pred Hhhhhh-hhhccCchHHHHHHHH
Q 038052 177 MRTQVK-QLFNARPRVSAWVADI 198 (225)
Q Consensus 177 ~~~~~~-~~~~~~p~L~~~~~~~ 198 (225)
...... ...+.+|+|.+|++++
T Consensus 78 ~~~~~~~~~~~~~p~l~~~~~~~ 100 (100)
T cd00299 78 DLLGPLLGLLDEYPRLAAWYDRL 100 (100)
T ss_pred HHhhhhhhhhccCccHHHHHHhC
Confidence 876331 1357899999999875
No 97
>cd03202 GST_C_etherase_LigE GST_C family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.26 E-value=3.2e-11 Score=83.56 Aligned_cols=68 Identities=15% Similarity=0.134 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCccccCCccHhhhhhhhHHHHHHhhhhhhhhccCchHHHHHHHHhc
Q 038052 133 VEEYKAKLAKVLDVYEARLTKSKYLASDSFTLVDMHHLPTINLLMRTQVKQLFNARPRVSAWVADITA 200 (225)
Q Consensus 133 ~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~p~L~~~~~~~~~ 200 (225)
.+...+.+.+.|+.+|++|++++|+.|+++|+||+++++.+.+..........+.+|++.+|++||.+
T Consensus 56 ~~~~~~~~~~~l~~l~~~L~~~~fl~Gd~~t~AD~~l~~~l~~~~~~~~~~~~~~~p~l~~W~~r~~~ 123 (124)
T cd03202 56 REAALANFRAALEPLRATLKGQPFLGGAAPNYADYIVFGGFQWARIVSPFPLLEEDDPVYDWFERCLD 123 (124)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCccCCCCCchhHHHHHHHHHHHHHcCcccccccCChHHHHHHHHhc
Confidence 45777889999999999999999999999999999999999998765333346789999999999976
No 98
>cd03192 GST_C_Sigma_like GST_C family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi, and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition
Probab=99.25 E-value=4.6e-11 Score=80.16 Aligned_cols=100 Identities=19% Similarity=0.228 Sum_probs=72.3
Q ss_pred cchHHHHHHHHHhhhcchhHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcC--CCccccCCccHhhhhh
Q 038052 92 PSSSFLIWKEVEAHQFDPVASKLTWEIVLKPMFGMTIDPTMVEEYKAKLAKVLDVYEARLTK--SKYLASDSFTLVDMHH 169 (225)
Q Consensus 92 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~--~~~l~G~~~t~aD~~l 169 (225)
++++++.+++...+ +...+...++.. .+....+...+...+.+.+.++.+|++|++ ++|++|+++|+||+++
T Consensus 2 e~~~v~~~~~~~~d-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~G~~~s~aDi~l 75 (104)
T cd03192 2 EAARVDALVDTIAD-LRAEFAKYFYEK-----DGEEKKEKKKEFLKEAIPKYLKKLEKILKENGGGYLVGDKLTWADLVV 75 (104)
T ss_pred hHHHHHHHHHHHHH-HHHHHHHHhhcC-----chHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCeeeCCCccHHHHHH
Confidence 56778888877544 333333332210 011123556677888899999999999987 8999999999999999
Q ss_pred hhHHHHHHhhhhhhh-hccCchHHHHHHHH
Q 038052 170 LPTINLLMRTQVKQL-FNARPRVSAWVADI 198 (225)
Q Consensus 170 ~~~l~~~~~~~~~~~-~~~~p~L~~~~~~~ 198 (225)
++.+.++..... .. ...+|+|.+|++++
T Consensus 76 ~~~~~~~~~~~~-~~~~~~~p~l~~~~~~~ 104 (104)
T cd03192 76 FDVLDYLLYLDP-KLLLKKYPKLKALRERV 104 (104)
T ss_pred HHHHHHHHhhCc-hhhHHhChhHHHHHHhC
Confidence 999988876532 23 67899999999875
No 99
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=99.23 E-value=7.3e-11 Score=73.61 Aligned_cols=59 Identities=24% Similarity=0.355 Sum_probs=50.7
Q ss_pred CCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCEEeeehHHHHHHHHHh
Q 038052 10 AMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQKIFESRAITQYIAME 78 (225)
Q Consensus 10 ~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~l~eS~aI~~yL~~~ 78 (225)
+.||+|.++.++|+.+|++|+.+...- + ..+|.|++|+|+++|+.+.+|..|++||.++
T Consensus 14 s~sp~clk~~~~Lr~~~~~~~v~~~~n-------~---~~sp~gkLP~l~~~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 14 SVDPECLAVLAYLKFAGAPLKVVPSNN-------P---WRSPTGKLPALLTSGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred cCCHHHHHHHHHHHcCCCCEEEEecCC-------C---CCCCCCccCEEEECCEEecChHHHHHHHHHc
Confidence 367999999999999999998874331 1 2579999999999999999999999999875
No 100
>cd03211 GST_C_Metaxin2 GST_C family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.23 E-value=4e-11 Score=83.22 Aligned_cols=72 Identities=14% Similarity=0.203 Sum_probs=60.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCccHhhhhhhhHHHHHHhh-----hhhhhhccCchHHHHHHHHh
Q 038052 128 IDPTMVEEYKAKLAKVLDVYEARLTKSKYLASDSFTLVDMHHLPTINLLMRT-----QVKQLFNARPRVSAWVADIT 199 (225)
Q Consensus 128 ~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~-----~~~~~~~~~p~L~~~~~~~~ 199 (225)
......++......+.|+.|++.|++++|++|++||.+|+++++.+..+... ........+|||.+|++||.
T Consensus 50 ~gr~~~ee~~~~~~~~l~aLs~~Lg~~~~l~Gd~pT~~Da~vf~~la~~~~~~~~~~~l~~~~~~~pnL~~y~~Ri~ 126 (126)
T cd03211 50 WDDKTLDQVIEEVDQCCQALSQRLGTQPYFFGDQPTELDALVFGHLFTILTTQLPNDELAEKVKKYSNLLAFCRRIE 126 (126)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCcHHHHHHHHHHHHHHhcCCCChHHHHHHHhCcHHHHHHHhcC
Confidence 3344557788889999999999999999999999999999999999888744 22234778999999999974
No 101
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.21 E-value=8.5e-11 Score=74.75 Aligned_cols=71 Identities=21% Similarity=0.268 Sum_probs=62.1
Q ss_pred ceEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCEEeeehHHHHHHHH
Q 038052 3 VIKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQKIFESRAITQYIA 76 (225)
Q Consensus 3 ~~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~l~eS~aI~~yL~ 76 (225)
+++||+.+.||+|.+++.+|+..||+|+.+.++-. ....++...++..++|++..+|..+.++.+|.+||+
T Consensus 9 ~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~---~~~~~~~~~~g~~~vP~i~i~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 9 SVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGND---ARGRSLRAVTGATTVPQVFIGGKLIGGSDELEAYLA 79 (79)
T ss_pred CEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCC---hHHHHHHHHHCCCCcCeEEECCEEEcCHHHHHHHhC
Confidence 58999999999999999999999999999877642 223456677888999999999999999999999984
No 102
>PF14497 GST_C_3: Glutathione S-transferase, C-terminal domain; PDB: 3AY8_A 2UZ8_B 1V2A_C 2HNL_A 2YV9_B 3H1N_A 3FR6_A 1Q4J_B 1PA3_B 1OKT_B ....
Probab=99.18 E-value=8.3e-11 Score=78.24 Aligned_cols=67 Identities=21% Similarity=0.303 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCC--ccccCCccHhhhhhhhHHHHHHhhhhhhhhccCchHHHHHHHHhc
Q 038052 131 TMVEEYKAKLAKVLDVYEARLTKSK--YLASDSFTLVDMHHLPTINLLMRTQVKQLFNARPRVSAWVADITA 200 (225)
Q Consensus 131 ~~~~~~~~~l~~~l~~le~~L~~~~--~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~p~L~~~~~~~~~ 200 (225)
...+...+.+.+.+..++++|++++ |++|++||+||+++++.+..+... . ..+.+|+|.+|++||++
T Consensus 31 ~~~~~~~~~~~~~l~~l~~~L~~~~~~~l~G~~~T~AD~~v~~~l~~~~~~-~--~~~~~p~L~~w~~ri~~ 99 (99)
T PF14497_consen 31 ASGDFSREELPKALKILEKHLAERGGDFLVGDKPTLADIAVFGFLASLRWA-D--FPKDYPNLVRWYERIEE 99 (99)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTSSSSSSSSS--HHHHHHHHHHHHHHCC-H--HTTTCHHHHHHHHHHHT
T ss_pred hhHHhhHHHHHHHHHHHHHHHHcCCCeeecCCCCCHHHHHHHHHHHHHhhc-c--cccccHHHHHHHHhhcC
Confidence 3456778889999999999999877 999999999999999999777643 1 22699999999999974
No 103
>cd03193 GST_C_Metaxin GST_C family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities. Other members are the cadmium-inducible
Probab=99.17 E-value=1.2e-10 Score=75.65 Aligned_cols=66 Identities=15% Similarity=0.226 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccccCCccHhhhhhhhHHHHHHhhhh-----hhhhccCchHHHHHHHHh
Q 038052 134 EEYKAKLAKVLDVYEARLTKSKYLASDSFTLVDMHHLPTINLLMRTQV-----KQLFNARPRVSAWVADIT 199 (225)
Q Consensus 134 ~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~-----~~~~~~~p~L~~~~~~~~ 199 (225)
....+++.+.++.+|+.|++++|++|+++|+||+++++.+.++..... ....+.+|+|.+|++++.
T Consensus 18 ~~~~~~~~~~l~~le~~L~~~~yl~Gd~~t~aDi~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~r~~ 88 (88)
T cd03193 18 REIYSLAKKDLKALSDLLGDKKFFFGDKPTSLDATVFGHLASILYAPLPNSALQLILKEYPNLVEYCERIR 88 (88)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHHHHHHHhcCCCChHHHHHHHhCcHHHHHHHHhC
Confidence 366778899999999999999999999999999999999988865311 123578999999999873
No 104
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.07 E-value=1.1e-09 Score=68.28 Aligned_cols=71 Identities=17% Similarity=0.216 Sum_probs=60.9
Q ss_pred ceEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCEEeeehHHHHHHHH
Q 038052 3 VIKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQKIFESRAITQYIA 76 (225)
Q Consensus 3 ~~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~l~eS~aI~~yL~ 76 (225)
++++|..+.||+|.+++-+|...|++|+.+.++... ....+....+..++|++..+|..+.++..|.+||+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~---~~~~~~~~~g~~~vP~ifi~g~~igg~~~l~~~l~ 72 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDI---TGRSLRAVTGAMTVPQVFIDGELIGGSDDLEKYFA 72 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCCh---hHHHHHHHhCCCCcCeEEECCEEEeCHHHHHHHhC
Confidence 589999999999999999999999999998876432 22345566788899999999999999999999974
No 105
>cd03212 GST_C_Metaxin1_3 GST_C family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins. Mammalian metaxin (or metaxin 1) is a component of the preprotein import complex of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals.
Probab=99.06 E-value=6.3e-10 Score=78.27 Aligned_cols=72 Identities=15% Similarity=0.271 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCccHhhhhhhhHHHHHHhhhhh-----hhhccCchHHHHHHHHhc
Q 038052 129 DPTMVEEYKAKLAKVLDVYEARLTKSKYLASDSFTLVDMHHLPTINLLMRTQVK-----QLFNARPRVSAWVADITA 200 (225)
Q Consensus 129 ~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~-----~~~~~~p~L~~~~~~~~~ 200 (225)
++...++......+.++.|++.|++++|++|+++|.+|+++++.+..+...... ....++|||.+|++||.+
T Consensus 58 ~~~~~~~~~~~a~~~l~~l~~~L~~~~~~~Gd~~t~~D~~~~~~l~~~~~~~~~~~~l~~~~~~~pnL~~~~~ri~~ 134 (137)
T cd03212 58 ETEVEAEIYRDAKECLNLLSQRLGESQFFFGDTPTSLDALVFGYLAPLLKAPLPNNKLQNHLKQCPNLCRFCDRILS 134 (137)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcHHHHHHHHHHHHHHhccCCChHHHHHHHHCcHHHHHHHHHHH
Confidence 344567788888999999999999999999999999999999998887753221 346789999999999985
No 106
>cd03205 GST_C_6 GST_C family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.04 E-value=1.4e-09 Score=72.15 Aligned_cols=70 Identities=24% Similarity=0.328 Sum_probs=58.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCccHhhhhhhhHHHHHHhhh-hhhhhccCchHHHHHHHH
Q 038052 126 MTIDPTMVEEYKAKLAKVLDVYEARLTKSKYLASDSFTLVDMHHLPTINLLMRTQ-VKQLFNARPRVSAWVADI 198 (225)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~-~~~~~~~~p~L~~~~~~~ 198 (225)
...++...+...+++.+.|..+|++|++++| +++|+||+++++.+.+..... .....+.+|+|.+|+++|
T Consensus 28 ~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~---d~~TlADi~l~~~l~~~~~~~~~~~~~~~~p~l~~w~~rm 98 (98)
T cd03205 28 EKRSQPWLERQRGKIERALDALEAELAKLPL---DPLDLADIAVACALGYLDFRHPDLDWRAAHPALAAWYARF 98 (98)
T ss_pred hhhChHHHHHHHHHHHHHHHHHHHhhhhCCC---CCCCHHHHHHHHHHHHHHhHccCcchhhhChHHHHHHHhC
Confidence 4566678889999999999999999998888 899999999999999887542 222357899999999985
No 107
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.93 E-value=5.3e-09 Score=65.38 Aligned_cols=69 Identities=13% Similarity=0.089 Sum_probs=58.4
Q ss_pred ceEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCEEeeehHHHHH
Q 038052 3 VIKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQKIFESRAITQ 73 (225)
Q Consensus 3 ~~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~l~eS~aI~~ 73 (225)
.++||+.+.||+|++++.+|+.+||+|+.+.++.. ....+++.+.+|.+++|++..+|..+.+-.....
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~--~~~~~el~~~~g~~~vP~v~i~~~~iGg~~~~~~ 70 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIF--PERKAELEERTGSSVVPQIFFNEKLVGGLTDLKS 70 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCC--HHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHh
Confidence 48999999999999999999999999999977643 2334678888999999999999999887766544
No 108
>cd03197 GST_C_mPGES2 GST_C family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH, or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature, and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated and a C-terminal soluble domain with a GST-like structure. The C-terminus contains two structural domains a N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST active site is located in a cleft between t
Probab=98.93 E-value=3.5e-09 Score=74.37 Aligned_cols=64 Identities=13% Similarity=0.229 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHhh-cCCCccccCCccHhhhhhhhHHHHHHhhhhhhhhccCchHHHHHHHHhc
Q 038052 137 KAKLAKVLDVYEARL-TKSKYLASDSFTLVDMHHLPTINLLMRTQVKQLFNARPRVSAWVADITA 200 (225)
Q Consensus 137 ~~~l~~~l~~le~~L-~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~p~L~~~~~~~~~ 200 (225)
++.+...++.+-+.+ ++++|+.|++||+||+++++.+..+........+.++|++.+|++||.+
T Consensus 81 r~~L~~a~~~w~~~~~~~~~FlaGd~ptIADisvyg~l~s~e~~~~~~Dl~~~p~I~~W~eRm~~ 145 (149)
T cd03197 81 REWLYDALNTWVAALGKDRQFHGGSKPNLADLAVYGVLRSVEGHPAFKDMVEETKIGEWYERMDA 145 (149)
T ss_pred HHHHHHHHHHHHHHhcCCCCccCCCCCCHHHHHHHHHHHHHHHhccccchhhCcCHHHHHHHHHH
Confidence 444445555444444 4568999999999999999999888776333246689999999999986
No 109
>PF14834 GST_C_4: Glutathione S-transferase, C-terminal domain; PDB: 3BBY_A.
Probab=98.88 E-value=2.4e-08 Score=66.08 Aligned_cols=112 Identities=16% Similarity=0.177 Sum_probs=76.3
Q ss_pred ccchHHHHHHHHHhhhcchhHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcC-CCccccCCccHhhhhh
Q 038052 91 KPSSSFLIWKEVEAHQFDPVASKLTWEIVLKPMFGMTIDPTMVEEYKAKLAKVLDVYEARLTK-SKYLASDSFTLVDMHH 169 (225)
Q Consensus 91 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~-~~~l~G~~~t~aD~~l 169 (225)
.++++.+++..|..+.|.......--...+ .........+.....+.+.+...+++|.+ ++||+|+ .|+||..+
T Consensus 3 ~~RArAR~vqAwlrSdf~~lR~Erpt~vvf----~~~~~~pLs~~a~~~a~kL~~~a~~ll~~g~~~LFGe-wsIAD~dl 77 (117)
T PF14834_consen 3 QERARARQVQAWLRSDFMALRQERPTNVVF----RGARKPPLSEAAQAAAQKLIAVAERLLADGGPNLFGE-WSIADADL 77 (117)
T ss_dssp HHHHHHHHHHHHHHHS-HHHHHHS-THHHH----S--------HHHHHHHHHHHHHHHHHTTT--SSTTSS---HHHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHhhCChhhhh----cCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCcccc-chHHHHHH
Confidence 578899999999988887654433222221 12222344566677778888899999885 5899996 99999999
Q ss_pred hhHHHHHHhhhhhhhhccCchHHHHHHHHhcChhHHHHHhhc
Q 038052 170 LPTINLLMRTQVKQLFNARPRVSAWVADITARPAWTKVLAMQ 211 (225)
Q Consensus 170 ~~~l~~~~~~~~~~~~~~~p~L~~~~~~~~~~p~~~~~~~~~ 211 (225)
++++.++...+. .-.+++.+|.++.-++|+++++++..
T Consensus 78 A~ml~Rl~~~gd----~vP~~l~~Ya~~qwqrpsVQ~Wla~~ 115 (117)
T PF14834_consen 78 ALMLNRLVTYGD----PVPERLADYAERQWQRPSVQRWLALS 115 (117)
T ss_dssp HHHHHHHHTTT--------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCC----CCCHHHHHHHHHHHCCHHHHHHHHHh
Confidence 999999988764 34468999999999999999998754
No 110
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.86 E-value=1.2e-08 Score=63.55 Aligned_cols=71 Identities=21% Similarity=0.304 Sum_probs=57.0
Q ss_pred ceEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCEEe--eehHHHHHHH
Q 038052 3 VIKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQKI--FESRAITQYI 75 (225)
Q Consensus 3 ~~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~l--~eS~aI~~yL 75 (225)
+++||+.+.||+|++++.+|+..|++|..+.++-. ....+++...++.+.+|++..+|..+ ++..+|.++|
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~--~~~~~~~~~~~~~~~vP~~~~~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKD--SAAREEVLKVLGQRGVPVIVIGHKIIVGFDPEKLDQLL 73 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCC--HHHHHHHHHHhCCCcccEEEECCEEEeeCCHHHHHHHh
Confidence 48999999999999999999999999998766532 12234567788999999999888887 5666666654
No 111
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.84 E-value=1.9e-08 Score=62.31 Aligned_cols=70 Identities=16% Similarity=0.144 Sum_probs=59.4
Q ss_pred ceEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCEEeeehHHHHHH
Q 038052 3 VIKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQKIFESRAITQY 74 (225)
Q Consensus 3 ~~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~l~eS~aI~~y 74 (225)
++++|+.+.||+|++++.+|+.+|++|+...+... ....+++.+.++..++|++..+|..+.++..|.+.
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~--~~~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~ 70 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILED--GELREELKELSGWPTVPQIFINGEFIGGYDDLKAL 70 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCC--HHHHHHHHHHhCCCCcCEEEECCEEEecHHHHHHh
Confidence 47899999999999999999999999998776543 22346777889999999999999999999887653
No 112
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.79 E-value=2.1e-08 Score=62.37 Aligned_cols=64 Identities=22% Similarity=0.215 Sum_probs=53.8
Q ss_pred ceEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCEEeeeh
Q 038052 3 VIKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQKIFES 68 (225)
Q Consensus 3 ~~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~l~eS 68 (225)
++++|+.+.||+|.+++.+|.++|++|..+.++.. ....+++...+|.+++|++.++|..+.+.
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~--~~~~~~~~~~~~~~~vP~i~~~~~~i~g~ 64 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDED--PEALEELKKLNGYRSVPVVVIGDEHLSGF 64 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCC--HHHHHHHHHHcCCcccCEEEECCEEEecC
Confidence 47999999999999999999999999998877653 23346777889999999999988777654
No 113
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.75 E-value=5.3e-08 Score=61.09 Aligned_cols=72 Identities=15% Similarity=0.111 Sum_probs=57.8
Q ss_pred ceEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCC-CCCeEEeCCEEeeehHHHHHHHH
Q 038052 3 VIKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFG-QVPALEHGGQKIFESRAITQYIA 76 (225)
Q Consensus 3 ~~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g-~vP~L~~~~~~l~eS~aI~~yL~ 76 (225)
+++||+.+.||+|.+++-+|+.+||+|+.+.++.. ....+++....+.. ++|++..+|..+.+...+.++-.
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~--~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~ 73 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGD--PALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALER 73 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCC--HHHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHh
Confidence 47899999999999999999999999999888753 11223444455555 89999999999999998887643
No 114
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.74 E-value=5.4e-08 Score=61.94 Aligned_cols=62 Identities=16% Similarity=0.220 Sum_probs=49.0
Q ss_pred ceEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCEEeee
Q 038052 3 VIKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQKIFE 67 (225)
Q Consensus 3 ~~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~l~e 67 (225)
++++|..+.||+|.+++-+|.++||+|+.+.++-.. ...+....++..++|+++.++..+.+
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~---~~~~~~~~~g~~~vPvv~i~~~~~~G 63 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVP---EAAETLRAQGFRQLPVVIAGDLSWSG 63 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCH---HHHHHHHHcCCCCcCEEEECCEEEec
Confidence 489999999999999999999999999999887421 11222334688999999988866553
No 115
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=6.4e-08 Score=61.42 Aligned_cols=74 Identities=18% Similarity=0.156 Sum_probs=57.7
Q ss_pred ceEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCEEeeehHHHHHHHH
Q 038052 3 VIKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQKIFESRAITQYIA 76 (225)
Q Consensus 3 ~~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~l~eS~aI~~yL~ 76 (225)
++++|..+.||||.++.-+|..+|++|+.+.++....+...+.....++..++|++..+|..+..+..+.++..
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~~~~ 75 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDALEA 75 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEEeCcccHHHHHh
Confidence 48999999999999999999999999999988876432222333345699999999999988876655554443
No 116
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.65 E-value=1.2e-07 Score=59.71 Aligned_cols=72 Identities=17% Similarity=0.260 Sum_probs=55.0
Q ss_pred ceEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhC-CCCCCCeEE-eCCEEeeeh--HHHHHHHH
Q 038052 3 VIKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLN-PFGQVPALE-HGGQKIFES--RAITQYIA 76 (225)
Q Consensus 3 ~~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~-P~g~vP~L~-~~~~~l~eS--~aI~~yL~ 76 (225)
+++||+.+.||+|++++-+|...|++|+.+.++-. ....+.+...+ +...+|+++ ++|.++.++ ..|..+|.
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~--~~~~~~~~~~~~~~~~vP~i~~~~g~~l~~~~~~~~~~~l~ 76 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEED--EGAADRVVSVNNGNMTVPTVKFADGSFLTNPSAAQVKAKLQ 76 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcCC--HhHHHHHHHHhCCCceeCEEEECCCeEecCCCHHHHHHHhh
Confidence 47999999999999999999999999998765532 23345666776 899999997 577777654 44555553
No 117
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.62 E-value=3.3e-07 Score=59.00 Aligned_cols=76 Identities=11% Similarity=0.121 Sum_probs=61.7
Q ss_pred ceEEeccCCChhhHHHHHHHHh-----cCCcceEEeccCCCCCCCchhHhhhCCC--CCCCeEEeCCEEeeehHHHHHHH
Q 038052 3 VIKVHGAAMSTAAQRVFTCLYE-----KELNFEFVPVDMASGEHKKEAYLSLNPF--GQVPALEHGGQKIFESRAITQYI 75 (225)
Q Consensus 3 ~~~Ly~~~~s~~~~~~r~~L~~-----~gi~y~~~~v~~~~~~~~~~~~~~~~P~--g~vP~L~~~~~~l~eS~aI~~yL 75 (225)
.+++|+.+.||+|.+++-+|+. .|++|+.+.++-... ..+++...... .++|++..||..+.+...|..++
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~--~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~~~~ 79 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGI--SKADLEKTVGKPVETVPQIFVDQKHIGGCTDFEAYV 79 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChH--HHHHHHHHHCCCCCcCCEEEECCEEEcCHHHHHHHH
Confidence 4999999999999999999999 899999988874311 12344444333 68999999999999999999999
Q ss_pred HHhCC
Q 038052 76 AMEYP 80 (225)
Q Consensus 76 ~~~~~ 80 (225)
.+.++
T Consensus 80 ~~~~~ 84 (85)
T PRK11200 80 KENLG 84 (85)
T ss_pred HHhcc
Confidence 98764
No 118
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.61 E-value=2e-07 Score=59.08 Aligned_cols=72 Identities=13% Similarity=0.100 Sum_probs=60.1
Q ss_pred eEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCEEeeehHHHHHHHHH
Q 038052 4 IKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQKIFESRAITQYIAM 77 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~l~eS~aI~~yL~~ 77 (225)
+++|+.+.||+|.+++-+|+.+|++|+.+.++... ...+++...++...+|++..+|..+.+...+..+-.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~--~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDP--ALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDRE 72 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCH--HHHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHHc
Confidence 58999999999999999999999999999887532 1234566667789999999999999998888777654
No 119
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.50 E-value=7.6e-07 Score=56.76 Aligned_cols=76 Identities=16% Similarity=0.110 Sum_probs=62.2
Q ss_pred ceEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCC-CCchhHhhhCCCCCCCeEEeCCEEeeehHHHHHHHHHh
Q 038052 3 VIKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGE-HKKEAYLSLNPFGQVPALEHGGQKIFESRAITQYIAME 78 (225)
Q Consensus 3 ~~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~-~~~~~~~~~~P~g~vP~L~~~~~~l~eS~aI~~yL~~~ 78 (225)
++++|+.+.||+|.+++-+|...+++|+...++..... .....+.+.+...++|++..+|..+.++..|..+..+-
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~~g 77 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHKSG 77 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHcC
Confidence 47899999999999999999999999999888865321 11234556777889999999999999999999887653
No 120
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.49 E-value=3e-07 Score=55.01 Aligned_cols=60 Identities=23% Similarity=0.231 Sum_probs=50.3
Q ss_pred eEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCEEe
Q 038052 4 IKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQKI 65 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~l 65 (225)
+++|+.+.||+|.+++-+|+.+|++|+...++... ...+++.+.+...++|++..||..|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~--~~~~~l~~~~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDE--EAREELKELSGVRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSH--HHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccch--hHHHHHHHHcCCCccCEEEECCEEC
Confidence 58999999999999999999999999999888642 2345566667889999999988764
No 121
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.48 E-value=4.9e-07 Score=56.24 Aligned_cols=57 Identities=21% Similarity=0.266 Sum_probs=44.6
Q ss_pred eEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCE
Q 038052 4 IKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQ 63 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~ 63 (225)
+++|+.+.||+|.+++-+|+.+||+|+.+.++-.. ...+++ ...+..++|+++.+|.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~--~~~~~~-~~~g~~~vP~v~~~g~ 57 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQP--EAIDYV-KAQGFRQVPVIVADGD 57 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCH--HHHHHH-HHcCCcccCEEEECCC
Confidence 58999999999999999999999999998876421 112333 3457789999998654
No 122
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.45 E-value=1.1e-06 Score=58.18 Aligned_cols=72 Identities=15% Similarity=0.115 Sum_probs=58.0
Q ss_pred ceEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCC-CCchhHhhhCCCCCCCeEEeCCEEeeehHHHHHH
Q 038052 3 VIKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGE-HKKEAYLSLNPFGQVPALEHGGQKIFESRAITQY 74 (225)
Q Consensus 3 ~~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~-~~~~~~~~~~P~g~vP~L~~~~~~l~eS~aI~~y 74 (225)
++++|.-+.||+|.+++-+|...|++|+.+.++..... ..-+.+...++..++|++..+|..+.+...+...
T Consensus 9 ~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~~l 81 (99)
T TIGR02189 9 AVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENVMAL 81 (99)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHHHHH
Confidence 68999999999999999999999999999888743211 0112345567888999999999999998887764
No 123
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.44 E-value=1.5e-06 Score=56.02 Aligned_cols=75 Identities=9% Similarity=0.112 Sum_probs=58.5
Q ss_pred eEEeccCCChhhHHHHHHHHhcC-----CcceEEeccCCCCCCCchhHhhhCCC--CCCCeEEeCCEEeeehHHHHHHHH
Q 038052 4 IKVHGAAMSTAAQRVFTCLYEKE-----LNFEFVPVDMASGEHKKEAYLSLNPF--GQVPALEHGGQKIFESRAITQYIA 76 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L~~~g-----i~y~~~~v~~~~~~~~~~~~~~~~P~--g~vP~L~~~~~~l~eS~aI~~yL~ 76 (225)
+++|+.+.||+|.+++-+|...+ ++|+.+.++-.. ....++...... .+||++..+|..+.++..|..++.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~--~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~~ 79 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEG--ISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLVK 79 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCH--HHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHHH
Confidence 68999999999999999999985 567776665321 112345544443 689999999999999999999998
Q ss_pred HhCC
Q 038052 77 MEYP 80 (225)
Q Consensus 77 ~~~~ 80 (225)
+.++
T Consensus 80 ~~~~ 83 (86)
T TIGR02183 80 ENFD 83 (86)
T ss_pred hccc
Confidence 8764
No 124
>PHA03050 glutaredoxin; Provisional
Probab=98.43 E-value=1.4e-06 Score=58.56 Aligned_cols=71 Identities=10% Similarity=0.126 Sum_probs=58.0
Q ss_pred ceEEeccCCChhhHHHHHHHHhcCC---cceEEeccCCC-CCCCchhHhhhCCCCCCCeEEeCCEEeeehHHHHH
Q 038052 3 VIKVHGAAMSTAAQRVFTCLYEKEL---NFEFVPVDMAS-GEHKKEAYLSLNPFGQVPALEHGGQKIFESRAITQ 73 (225)
Q Consensus 3 ~~~Ly~~~~s~~~~~~r~~L~~~gi---~y~~~~v~~~~-~~~~~~~~~~~~P~g~vP~L~~~~~~l~eS~aI~~ 73 (225)
++++|..+.||||.+++-+|...|+ +|+.+.++-.. +.....++.+.+...+||.+..+|..+.+...+..
T Consensus 14 ~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g~~iGG~ddl~~ 88 (108)
T PHA03050 14 KVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGKTSIGGYSDLLE 88 (108)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECCEEEeChHHHHH
Confidence 6899999999999999999999999 78888777321 11123566677888999999999999988887766
No 125
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=98.35 E-value=3.2e-06 Score=52.25 Aligned_cols=55 Identities=29% Similarity=0.451 Sum_probs=47.8
Q ss_pred CChhhHHHHHHHHhcCCc---ceEEeccCCCCCCCchhHhhhCCCCCCCeEEe-CCEEeeehHHHHHHH
Q 038052 11 MSTAAQRVFTCLYEKELN---FEFVPVDMASGEHKKEAYLSLNPFGQVPALEH-GGQKIFESRAITQYI 75 (225)
Q Consensus 11 ~s~~~~~~r~~L~~~gi~---y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~-~~~~l~eS~aI~~yL 75 (225)
.+|-|.++.++|+.++.+ |+++..+- + ..+|.|++|+|.+ ++..+.+-..|++||
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~n-------~---~~Sptg~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSNN-------P---WLSPTGELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcCC-------C---CcCCCCCCCEEEECCCcEEECHHHHHHhh
Confidence 679999999999999999 77765442 1 2689999999998 999999999999998
No 126
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.17 E-value=1.2e-05 Score=53.06 Aligned_cols=71 Identities=13% Similarity=0.110 Sum_probs=55.4
Q ss_pred ceEEecc-----CCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCEEeeehHHHHHHH
Q 038052 3 VIKVHGA-----AMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQKIFESRAITQYI 75 (225)
Q Consensus 3 ~~~Ly~~-----~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~l~eS~aI~~yL 75 (225)
++.+|.. +.||||.+++-+|..+|++|+...++-. .....++...+...++|.+..+|..+.+...+....
T Consensus 13 ~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~--~~~~~~l~~~tg~~tvP~vfi~g~~iGG~ddl~~l~ 88 (97)
T TIGR00365 13 PVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLED--PEIRQGIKEYSNWPTIPQLYVKGEFVGGCDIIMEMY 88 (97)
T ss_pred CEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCC--HHHHHHHHHHhCCCCCCEEEECCEEEeChHHHHHHH
Confidence 5777854 7899999999999999999998877422 122234556677889999999999988888877644
No 127
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.17 E-value=1.1e-05 Score=51.50 Aligned_cols=74 Identities=14% Similarity=0.141 Sum_probs=58.8
Q ss_pred eEEeccCCChhhHHHHHHHHhcCCc--ceEEeccCCCCC-CCchhHhhhCCCCCCCeEEeCCEEeeehHHHHHHHHH
Q 038052 4 IKVHGAAMSTAAQRVFTCLYEKELN--FEFVPVDMASGE-HKKEAYLSLNPFGQVPALEHGGQKIFESRAITQYIAM 77 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L~~~gi~--y~~~~v~~~~~~-~~~~~~~~~~P~g~vP~L~~~~~~l~eS~aI~~yL~~ 77 (225)
+++|+.+.||+|.+++-+|...+++ |+...++..... ...+.+.+.....++|++..+|..+.++..+.+...+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALYKS 77 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHc
Confidence 4789999999999999999999999 888887754211 1112345667778999999999999999988887664
No 128
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=98.07 E-value=2.5e-05 Score=50.77 Aligned_cols=71 Identities=10% Similarity=0.121 Sum_probs=56.6
Q ss_pred ceEEecc-----CCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCEEeeehHHHHHHH
Q 038052 3 VIKVHGA-----AMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQKIFESRAITQYI 75 (225)
Q Consensus 3 ~~~Ly~~-----~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~l~eS~aI~~yL 75 (225)
++.+|.. +.||+|.+++-+|...|++|+.+.++-. .....++.+.+...++|++..+|..+.+...+....
T Consensus 9 ~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~--~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~~l~~l~ 84 (90)
T cd03028 9 PVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILED--EEVRQGLKEYSNWPTFPQLYVNGELVGGCDIVKEMH 84 (90)
T ss_pred CEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCC--HHHHHHHHHHhCCCCCCEEEECCEEEeCHHHHHHHH
Confidence 5677765 6899999999999999999999987632 122345556778889999999999999988887744
No 129
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.87 E-value=6.1e-05 Score=62.73 Aligned_cols=70 Identities=11% Similarity=0.133 Sum_probs=55.9
Q ss_pred CcceEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHh---------hhCCCCCCCeEEeCCEEeeehHHH
Q 038052 1 MGVIKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYL---------SLNPFGQVPALEHGGQKIFESRAI 71 (225)
Q Consensus 1 m~~~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~---------~~~P~g~vP~L~~~~~~l~eS~aI 71 (225)
|+.+++|+.+.||+|.++.-+|...||+|+.+.++-. . ...++. ...+..+||++..+|..+.+-...
T Consensus 1 m~~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~--~-~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l 77 (410)
T PRK12759 1 MVEVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDD--V-KRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNL 77 (410)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCC--h-hHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchHH
Confidence 7889999999999999999999999999999888722 1 111221 124677899999999999988877
Q ss_pred HH
Q 038052 72 TQ 73 (225)
Q Consensus 72 ~~ 73 (225)
..
T Consensus 78 ~~ 79 (410)
T PRK12759 78 MA 79 (410)
T ss_pred HH
Confidence 65
No 130
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=97.67 E-value=0.00025 Score=50.26 Aligned_cols=69 Identities=14% Similarity=0.096 Sum_probs=55.4
Q ss_pred eEEeccC------CChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCC----CCCCCeEEeCCEEeeehHHHHH
Q 038052 4 IKVHGAA------MSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNP----FGQVPALEHGGQKIFESRAITQ 73 (225)
Q Consensus 4 ~~Ly~~~------~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P----~g~vP~L~~~~~~l~eS~aI~~ 73 (225)
++||..+ .+|+|.+++-+|+.++|+|+.+.|++.. ...+++.+... ..++|.+..+|..|.+...+.+
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~--~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del~~ 79 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDS--GFREELRELLGAELKAVSLPRVFVDGRYLGGAEEVLR 79 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCH--HHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHHHH
Confidence 6899999 8999999999999999999998887642 22344555443 3799999999999999888777
Q ss_pred H
Q 038052 74 Y 74 (225)
Q Consensus 74 y 74 (225)
-
T Consensus 80 L 80 (147)
T cd03031 80 L 80 (147)
T ss_pred H
Confidence 4
No 131
>PF04399 Glutaredoxin2_C: Glutaredoxin 2, C terminal domain; InterPro: IPR007494 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. Unlike other glutaredoxins, glutaredoxin 2 (Grx2) cannot reduce ribonucleotide reductase. Grx2 has significantly higher catalytic activity in the reduction of mixed disulphides with glutathione (GSH) compared with other glutaredoxins. The active site residues (Cys9-Pro10-Tyr11-Cys12, in Escherichia coli Grx2, P39811 from SWISSPROT), which are found at the interface between the N- and C-terminal domains are identical to other glutaredoxins, but there is no other similarity between glutaredoxin 2 and other glutaredoxins. Grx2 is structurally similar to glutathione-S-transferases (GST), but there is no obvious sequence similarity. The inter-domain contacts are mainly hydrophobic, suggesting that the two domains are unlikely to be stable on their own. Both domains are needed for correct folding and activity of Grx2. It is thought that the primary function of Grx2 is to catalyse reversible glutathionylation of proteins with GSH in cellular redox regulation including the response to oxidative stress. The N-terminal domain is IPR004045 from INTERPRO.; PDB: 1G7O_A 3IR4_A.
Probab=97.53 E-value=0.00029 Score=48.84 Aligned_cols=68 Identities=18% Similarity=0.258 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCccccCCccHhhhhhhhHHHHHHhhhhhhhhccCchHHHHHHHHhcChhH
Q 038052 133 VEEYKAKLAKVLDVYEARLTKSKYLASDSFTLVDMHHLPTINLLMRTQVKQLFNARPRVSAWVADITARPAW 204 (225)
Q Consensus 133 ~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~p~L~~~~~~~~~~p~~ 204 (225)
......++...|..||.++.......| ++|+.||.+|+.|..+-.+.. +.-.|++.+|+++|.+...+
T Consensus 57 t~~~i~~l~~~L~~Le~ll~~~~~~n~-~LS~dDi~lFp~LR~Ltivkg---i~~P~~V~~Y~~~~s~~t~V 124 (132)
T PF04399_consen 57 TPELIAELNADLEELEPLLASPNAVNG-ELSIDDIILFPILRSLTIVKG---IQWPPKVRAYMDRMSKATGV 124 (132)
T ss_dssp HHHHHHHHHHHHHHHHHH-SCTTBTTS-S--HHHHHHHHHHHHHCTCTT---S---HHHHHHHHHHHHHHT-
T ss_pred CHHHHHHHHHHHHHHHHHhccccccCC-CCCHHHHHHHHHHhhhhhccC---CcCCHHHHHHHHHHHHHcCC
Confidence 356778888999999999986666656 899999999999999987744 34557999999999886554
No 132
>cd03199 GST_C_GRX2 GST_C family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD (most GRXs range from 9-12kD). GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain, but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=97.52 E-value=0.00042 Score=47.62 Aligned_cols=67 Identities=18% Similarity=0.272 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccccCCccHhhhhhhhHHHHHHhhhhhhhhccCchHHHHHHHHhcChhH
Q 038052 134 EEYKAKLAKVLDVYEARLTKSKYLASDSFTLVDMHHLPTINLLMRTQVKQLFNARPRVSAWVADITARPAW 204 (225)
Q Consensus 134 ~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~p~L~~~~~~~~~~p~~ 204 (225)
....+++...|..++..+..... .++++|+.|+.+|++|..+-.+.. +.-.|++.+|+++|.+...+
T Consensus 59 ~~~i~~l~~~L~~l~~ll~~~~~-~n~~ls~DDi~lFp~LR~Lt~vkg---i~~P~~V~~Y~~~~s~~t~V 125 (128)
T cd03199 59 PQYIAALNALLEELDPLILSSEA-VNGQLSTDDIILFPILRNLTLVKG---LVFPPKVKAYLERMSALTKV 125 (128)
T ss_pred HHHHHHHHHHHHHHHHHHcCccc-cCCcCCHHHHHHHHHHhhhhhhcC---CCCCHHHHHHHHHHHHHhCC
Confidence 46677788889999998854444 455799999999999999988743 34557899999999886543
No 133
>PRK10824 glutaredoxin-4; Provisional
Probab=97.44 E-value=0.00083 Score=45.48 Aligned_cols=71 Identities=10% Similarity=0.064 Sum_probs=56.1
Q ss_pred ceEEecc-----CCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCEEeeehHHHHHHH
Q 038052 3 VIKVHGA-----AMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQKIFESRAITQYI 75 (225)
Q Consensus 3 ~~~Ly~~-----~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~l~eS~aI~~yL 75 (225)
++.+|.- +.||||.++.-+|...|++|....++-. ......+.+.+...++|-+-.+|.-|.++..+....
T Consensus 16 ~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d--~~~~~~l~~~sg~~TVPQIFI~G~~IGG~ddl~~l~ 91 (115)
T PRK10824 16 PILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQN--PDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMY 91 (115)
T ss_pred CEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCC--HHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHHHH
Confidence 4666765 4899999999999999999998776532 122345667788899999999999999998877743
No 134
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.34 E-value=0.0002 Score=59.85 Aligned_cols=119 Identities=16% Similarity=0.144 Sum_probs=81.7
Q ss_pred eCCEEeeehHHHHHHHHHhCCCCCCCCCCCCccchHHHHHHHHHhhhcchhHHHHHHHHHHhccCCCCCCHHHHHHHHHH
Q 038052 60 HGGQKIFESRAITQYIAMEYPEKGTRLASADKPSSSFLIWKEVEAHQFDPVASKLTWEIVLKPMFGMTIDPTMVEEYKAK 139 (225)
Q Consensus 60 ~~~~~l~eS~aI~~yL~~~~~~~~~~l~p~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (225)
.+|..+.++..+..|....... .+.+++.+.++++++.|+++... .....
T Consensus 43 ~d~~~l~~a~~~~~~~~~~~~~-~~~lf~~~~d~~~vd~w~~~s~~-----------------------------~~~~~ 92 (712)
T KOG1147|consen 43 LDGRKLNGATEPVVYSAALAKA-DPKLFGNNIDRSQVDHWVSFSST-----------------------------FSFDE 92 (712)
T ss_pred cccccccCCccchhhhhhhccc-CHhHcCCcccHHHHHHHHHHhhh-----------------------------cchHH
Confidence 3566777777777776643322 23577765899999999986543 11233
Q ss_pred HHHHHHHHHHhhcCCCccccCCccHhhhhhhhHHHHHHhhh-hhhhhccCchHHHHHHHHhcChhHHHHH
Q 038052 140 LAKVLDVYEARLTKSKYLASDSFTLVDMHHLPTINLLMRTQ-VKQLFNARPRVSAWVADITARPAWTKVL 208 (225)
Q Consensus 140 l~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~-~~~~~~~~p~L~~~~~~~~~~p~~~~~~ 208 (225)
+...+..++..|.-..|++|.++|.||+++|+.++.-.... .......+-++.+|++-....++.+++.
T Consensus 93 ~s~~~~~ld~~l~~~t~lvg~sls~Ad~aiw~~l~~n~~~~~~lk~~k~~~~v~Rw~~~~~~~~a~~~v~ 162 (712)
T KOG1147|consen 93 ISSSLSELDKFLVLRTFLVGNSLSIADFAIWGALHSNGMRQEQLKAKKDYQNVERWYDLPEFQEAHNKVL 162 (712)
T ss_pred HHHHHHHHHhhhhHHHHhhccchhHHHHHHHHHHhcccchHHHHHhhCCchhhhhhcCcHhHHHHHHHHH
Confidence 55667777888888889999999999999999998754431 1122456789999999555555555555
No 135
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.0022 Score=42.61 Aligned_cols=74 Identities=16% Similarity=0.142 Sum_probs=59.3
Q ss_pred ceEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCC-CCCchhHhhhCCCCCCCeEEeCCEEeeehHHHHHHHH
Q 038052 3 VIKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASG-EHKKEAYLSLNPFGQVPALEHGGQKIFESRAITQYIA 76 (225)
Q Consensus 3 ~~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~-~~~~~~~~~~~P~g~vP~L~~~~~~l~eS~aI~~yL~ 76 (225)
++..|.-+.||+|.++.-+|...|+++.++++|-... ..-...+.+.....++|.+..+|.-+.++..+..+-.
T Consensus 15 ~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~iGG~~dl~~lh~ 89 (104)
T KOG1752|consen 15 PVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKFIGGASDLMALHK 89 (104)
T ss_pred CEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEEEcCHHHHHHHHH
Confidence 5788999999999999999999999999999885432 1223344456667799999999999999888877644
No 136
>PRK10026 arsenate reductase; Provisional
Probab=97.26 E-value=0.00048 Score=48.36 Aligned_cols=35 Identities=6% Similarity=0.038 Sum_probs=32.9
Q ss_pred CcceEEeccCCChhhHHHHHHHHhcCCcceEEecc
Q 038052 1 MGVIKVHGAAMSTAAQRVFTCLYEKELNFEFVPVD 35 (225)
Q Consensus 1 m~~~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~ 35 (225)
|+++++|+.+.|.-|++++-.|+.+|++|+.+.+.
T Consensus 1 m~~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~ 35 (141)
T PRK10026 1 MSNITIYHNPACGTSRNTLEMIRNSGTEPTIIHYL 35 (141)
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeee
Confidence 88999999999999999999999999999998753
No 137
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.19 E-value=0.0021 Score=38.97 Aligned_cols=59 Identities=14% Similarity=0.078 Sum_probs=42.0
Q ss_pred ceEEeccCCChhhHHHHHHHHhc-----CCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCEEeee
Q 038052 3 VIKVHGAAMSTAAQRVFTCLYEK-----ELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQKIFE 67 (225)
Q Consensus 3 ~~~Ly~~~~s~~~~~~r~~L~~~-----gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~l~e 67 (225)
.+++|+.+.||+|.++.-+|++. +++|....++- .++.........+|++..+|..++.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~------~~~l~~~~~i~~vPti~i~~~~~~~ 65 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAE------FPDLADEYGVMSVPAIVINGKVEFV 65 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEccc------CHhHHHHcCCcccCEEEECCEEEEe
Confidence 47899999999999999888865 45555544332 2344445555679999988877653
No 138
>PTZ00062 glutaredoxin; Provisional
Probab=97.16 E-value=0.0023 Score=48.04 Aligned_cols=69 Identities=14% Similarity=0.123 Sum_probs=54.0
Q ss_pred ceEEecc-----CCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCEEeeehHHHHH
Q 038052 3 VIKVHGA-----AMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQKIFESRAITQ 73 (225)
Q Consensus 3 ~~~Ly~~-----~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~l~eS~aI~~ 73 (225)
++.||.- +.||+|.++.-+|...||+|....++-. +.....+.+.+...++|.+..+|..+.+...+.+
T Consensus 114 ~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d--~~~~~~l~~~sg~~TvPqVfI~G~~IGG~d~l~~ 187 (204)
T PTZ00062 114 KILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFED--PDLREELKVYSNWPTYPQLYVNGELIGGHDIIKE 187 (204)
T ss_pred CEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCC--HHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHH
Confidence 5667755 6899999999999999999998776522 2223455567778899999999999988877766
No 139
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=97.04 E-value=0.001 Score=46.36 Aligned_cols=33 Identities=12% Similarity=0.194 Sum_probs=30.9
Q ss_pred ceEEeccCCChhhHHHHHHHHhcCCcceEEecc
Q 038052 3 VIKVHGAAMSTAAQRVFTCLYEKELNFEFVPVD 35 (225)
Q Consensus 3 ~~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~ 35 (225)
|+++|+.+.|++|++++-+|..+||+|+.+.+.
T Consensus 1 mi~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~ 33 (131)
T PRK01655 1 MVTLFTSPSCTSCRKAKAWLEEHDIPFTERNIF 33 (131)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCCcEEeecc
Confidence 389999999999999999999999999998875
No 140
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.0029 Score=38.55 Aligned_cols=66 Identities=17% Similarity=0.346 Sum_probs=49.6
Q ss_pred CcceEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCC--------CCCchhHhh--hCCCCCCCeEE-eCCEEee
Q 038052 1 MGVIKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASG--------EHKKEAYLS--LNPFGQVPALE-HGGQKIF 66 (225)
Q Consensus 1 m~~~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~--------~~~~~~~~~--~~P~g~vP~L~-~~~~~l~ 66 (225)
|++.+||+...||-|.-..-.|+..+++|+.+.+.-.-. -+..++|-+ .|..-.+|+|. +||.++.
T Consensus 1 mskp~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl 77 (85)
T COG4545 1 MSKPKLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVL 77 (85)
T ss_pred CCCceeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEE
Confidence 888899999999999999999999999999998753221 112344443 35556799997 6777766
No 141
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=96.97 E-value=0.0011 Score=44.75 Aligned_cols=33 Identities=9% Similarity=0.148 Sum_probs=30.5
Q ss_pred eEEeccCCChhhHHHHHHHHhcCCcceEEeccC
Q 038052 4 IKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDM 36 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~ 36 (225)
+++|+.+.||+|++++-+|+.+|++|+.+.+.-
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~ 33 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVE 33 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccC
Confidence 589999999999999999999999999987753
No 142
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=96.95 E-value=0.0014 Score=44.55 Aligned_cols=33 Identities=18% Similarity=0.211 Sum_probs=30.7
Q ss_pred ceEEeccCCChhhHHHHHHHHhcCCcceEEecc
Q 038052 3 VIKVHGAAMSTAAQRVFTCLYEKELNFEFVPVD 35 (225)
Q Consensus 3 ~~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~ 35 (225)
|+++|+.+.|+.|++++-+|+.+||+|+.+.+.
T Consensus 1 mi~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~ 33 (115)
T cd03032 1 MIKLYTSPSCSSCRKAKQWLEEHQIPFEERNLF 33 (115)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCceEEEecC
Confidence 389999999999999999999999999998774
No 143
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=96.86 E-value=0.0017 Score=43.41 Aligned_cols=32 Identities=19% Similarity=0.418 Sum_probs=30.1
Q ss_pred eEEeccCCChhhHHHHHHHHhcCCcceEEecc
Q 038052 4 IKVHGAAMSTAAQRVFTCLYEKELNFEFVPVD 35 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~ 35 (225)
+++|+.+.|++|++++-+|+.+|++|+.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYL 32 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeec
Confidence 58999999999999999999999999998875
No 144
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=96.77 E-value=0.0096 Score=38.69 Aligned_cols=68 Identities=25% Similarity=0.222 Sum_probs=52.0
Q ss_pred eEEeccCCCh------hhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCC----CCCCCeEEeCCEEeeehHHHHH
Q 038052 4 IKVHGAAMST------AAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNP----FGQVPALEHGGQKIFESRAITQ 73 (225)
Q Consensus 4 ~~Ly~~~~s~------~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P----~g~vP~L~~~~~~l~eS~aI~~ 73 (225)
+++|+.+.|+ .|++++.+|.-+||+|+.+.|+... ....+..+..+ ..++|-+..++..+.+...+..
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~--~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~~ 79 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNE--ENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFFE 79 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCH--HHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHHH
Confidence 6788888765 4668899999999999999998643 22345555543 4799999999999998877665
No 145
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=96.70 E-value=0.0029 Score=44.13 Aligned_cols=33 Identities=18% Similarity=0.263 Sum_probs=31.0
Q ss_pred ceEEeccCCChhhHHHHHHHHhcCCcceEEecc
Q 038052 3 VIKVHGAAMSTAAQRVFTCLYEKELNFEFVPVD 35 (225)
Q Consensus 3 ~~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~ 35 (225)
|+++|+.+.|+.|++++-+|..+||+|+.+.+.
T Consensus 1 Mi~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~ 33 (132)
T PRK13344 1 MIKIYTISSCTSCKKAKTWLNAHQLSYKEQNLG 33 (132)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 389999999999999999999999999999875
No 146
>PRK12559 transcriptional regulator Spx; Provisional
Probab=96.65 E-value=0.0032 Score=43.88 Aligned_cols=34 Identities=9% Similarity=0.156 Sum_probs=31.2
Q ss_pred ceEEeccCCChhhHHHHHHHHhcCCcceEEeccC
Q 038052 3 VIKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDM 36 (225)
Q Consensus 3 ~~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~ 36 (225)
|+++|+.+.|+.|+++.-+|+.+||+|+.+.+.-
T Consensus 1 mi~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~ 34 (131)
T PRK12559 1 MVVLYTTASCASCRKAKAWLEENQIDYTEKNIVS 34 (131)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeC
Confidence 3899999999999999999999999999998753
No 147
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=96.54 E-value=0.0039 Score=42.54 Aligned_cols=32 Identities=22% Similarity=0.441 Sum_probs=29.8
Q ss_pred eEEeccCCChhhHHHHHHHHhcCCcceEEecc
Q 038052 4 IKVHGAAMSTAAQRVFTCLYEKELNFEFVPVD 35 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~ 35 (225)
+++|+.+.||+|++++-+|+.+||+|+.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIG 32 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecC
Confidence 58999999999999999999999999988764
No 148
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=96.45 E-value=0.0053 Score=41.79 Aligned_cols=33 Identities=15% Similarity=0.378 Sum_probs=30.8
Q ss_pred ceEEeccCCChhhHHHHHHHHhcCCcceEEecc
Q 038052 3 VIKVHGAAMSTAAQRVFTCLYEKELNFEFVPVD 35 (225)
Q Consensus 3 ~~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~ 35 (225)
++++|+.+.|.-|++++-.|+..||+|+.+.+.
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~ 34 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDYL 34 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEee
Confidence 599999999999999999999999999988664
No 149
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=96.29 E-value=0.0071 Score=40.96 Aligned_cols=32 Identities=13% Similarity=-0.077 Sum_probs=30.1
Q ss_pred eEEeccCCChhhHHHHHHHHhcCCcceEEecc
Q 038052 4 IKVHGAAMSTAAQRVFTCLYEKELNFEFVPVD 35 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~ 35 (225)
++||+.+.|+.|++++-+|+.+|++|+.+.+.
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~ 33 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAAGHEVEVRDLL 33 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCcEEeehh
Confidence 78999999999999999999999999998764
No 150
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=96.27 E-value=0.007 Score=40.43 Aligned_cols=32 Identities=13% Similarity=0.215 Sum_probs=30.0
Q ss_pred eEEeccCCChhhHHHHHHHHhcCCcceEEecc
Q 038052 4 IKVHGAAMSTAAQRVFTCLYEKELNFEFVPVD 35 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~ 35 (225)
+++|+.+.|+.|++++-+|+.+|++|+.+.+.
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~ 32 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYR 32 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecc
Confidence 58999999999999999999999999998765
No 151
>PRK10853 putative reductase; Provisional
Probab=96.17 E-value=0.009 Score=40.78 Aligned_cols=32 Identities=9% Similarity=0.222 Sum_probs=30.1
Q ss_pred eEEeccCCChhhHHHHHHHHhcCCcceEEecc
Q 038052 4 IKVHGAAMSTAAQRVFTCLYEKELNFEFVPVD 35 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~ 35 (225)
+++|+.+.|.-|++++-+|+.+|++|+.+.+.
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~ 33 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDYR 33 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeehc
Confidence 89999999999999999999999999998764
No 152
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=96.11 E-value=0.01 Score=40.93 Aligned_cols=33 Identities=12% Similarity=-0.013 Sum_probs=30.8
Q ss_pred ceEEeccCCChhhHHHHHHHHhcCCcceEEecc
Q 038052 3 VIKVHGAAMSTAAQRVFTCLYEKELNFEFVPVD 35 (225)
Q Consensus 3 ~~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~ 35 (225)
.+++|+.+.|.-|++++-.|+.+||+|+.+.+.
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~ 34 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDIL 34 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEecc
Confidence 589999999999999999999999999998764
No 153
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=95.68 E-value=0.12 Score=32.10 Aligned_cols=55 Identities=16% Similarity=0.201 Sum_probs=40.9
Q ss_pred eEEeccCCChhhHHH----HHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCEEee
Q 038052 4 IKVHGAAMSTAAQRV----FTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQKIF 66 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~----r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~l~ 66 (225)
+++|. ++||.|..+ .-++++.|++++...++- .++ ........+|++..||..+.
T Consensus 3 i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~------~~~-a~~~~v~~vPti~i~G~~~~ 61 (76)
T TIGR00412 3 IQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTD------MNE-ILEAGVTATPGVAVDGELVI 61 (76)
T ss_pred EEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCC------HHH-HHHcCCCcCCEEEECCEEEE
Confidence 67776 999999987 668888999988888871 122 22345678999998886664
No 154
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=95.29 E-value=0.03 Score=37.85 Aligned_cols=32 Identities=16% Similarity=0.140 Sum_probs=29.5
Q ss_pred eEEeccCCChhhHHHHHHHHhcCCcceEEecc
Q 038052 4 IKVHGAAMSTAAQRVFTCLYEKELNFEFVPVD 35 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~ 35 (225)
+++|+.+.|.-|++++-.|+.+|++|+.+.+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~ 32 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYL 32 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecc
Confidence 58999999999999999999999999998653
No 155
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=95.23 E-value=0.032 Score=37.86 Aligned_cols=32 Identities=13% Similarity=0.147 Sum_probs=29.5
Q ss_pred eEEeccCCChhhHHHHHHHHhcCCcceEEecc
Q 038052 4 IKVHGAAMSTAAQRVFTCLYEKELNFEFVPVD 35 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~ 35 (225)
+++|+.+.|+-|++++-.|+.+|++|+.+.+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~ 32 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYL 32 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecc
Confidence 58999999999999999999999999988654
No 156
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=94.71 E-value=0.2 Score=31.23 Aligned_cols=57 Identities=12% Similarity=0.046 Sum_probs=39.7
Q ss_pred ceEEeccCCChhhHHHHHHHHh----cCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCE
Q 038052 3 VIKVHGAAMSTAAQRVFTCLYE----KELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQ 63 (225)
Q Consensus 3 ~~~Ly~~~~s~~~~~~r~~L~~----~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~ 63 (225)
++++|+.++|++|..+.-.|+. .+..+....++... .++.........+|++..+|.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~----~~~~~~~~~v~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVME----NPQKAMEYGIMAVPAIVINGD 62 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCcc----CHHHHHHcCCccCCEEEECCE
Confidence 4789999999999988877754 34445556666532 234444555668999997775
No 157
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=94.66 E-value=0.18 Score=32.47 Aligned_cols=58 Identities=12% Similarity=0.060 Sum_probs=40.0
Q ss_pred ceEEeccCCChhhHHHHHHHHhc-----CCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCEEee
Q 038052 3 VIKVHGAAMSTAAQRVFTCLYEK-----ELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQKIF 66 (225)
Q Consensus 3 ~~~Ly~~~~s~~~~~~r~~L~~~-----gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~l~ 66 (225)
.+.+|..++|++|..+.-+++.. ++.+..+.++- .++......-..+|+++.||..+.
T Consensus 15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~------~~e~a~~~~V~~vPt~vidG~~~~ 77 (89)
T cd03026 15 NFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGAL------FQDEVEERGIMSVPAIFLNGELFG 77 (89)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHh------CHHHHHHcCCccCCEEEECCEEEE
Confidence 47899999999999877766655 45555554442 244445555667999998887655
No 158
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=94.63 E-value=0.3 Score=30.76 Aligned_cols=55 Identities=16% Similarity=0.202 Sum_probs=39.7
Q ss_pred ceEEeccCCChhhHHHHHHHHhcC--CcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCC
Q 038052 3 VIKVHGAAMSTAAQRVFTCLYEKE--LNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGG 62 (225)
Q Consensus 3 ~~~Ly~~~~s~~~~~~r~~L~~~g--i~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~ 62 (225)
+++||+-+.|+-|..+.-.|+... .+++...+|..+ ++++...-. -.+|||..+|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~----d~~l~~~Y~-~~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDE----DPELFEKYG-YRIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTT----THHHHHHSC-TSTSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCC----CHHHHHHhc-CCCCEEEEcC
Confidence 479999999999999999999654 467777788763 244444333 3899999776
No 159
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=94.46 E-value=0.16 Score=33.37 Aligned_cols=69 Identities=23% Similarity=0.211 Sum_probs=42.6
Q ss_pred eEEeccCCChh------hHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhC---------CCCCCCeEEeCCEEeeeh
Q 038052 4 IKVHGAAMSTA------AQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLN---------PFGQVPALEHGGQKIFES 68 (225)
Q Consensus 4 ~~Ly~~~~s~~------~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~---------P~g~vP~L~~~~~~l~eS 68 (225)
+++|....|+. .+++..+|+-++|+|+.+.+... +....+.++.. +....|-+..++..+.+-
T Consensus 3 I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~--e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gdy 80 (99)
T PF04908_consen 3 IKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMD--EEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGDY 80 (99)
T ss_dssp EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT---HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEEH
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCC--HHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEeeH
Confidence 88999887764 45899999999999998877763 22234444333 334557888888887776
Q ss_pred HHHHHH
Q 038052 69 RAITQY 74 (225)
Q Consensus 69 ~aI~~y 74 (225)
..+-+.
T Consensus 81 e~f~ea 86 (99)
T PF04908_consen 81 EDFEEA 86 (99)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665443
No 160
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.16 E-value=0.2 Score=32.65 Aligned_cols=65 Identities=11% Similarity=0.155 Sum_probs=46.6
Q ss_pred cCCChhhHHHHHHHHhcC-CcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCEEeeehHHHHHHH
Q 038052 9 AAMSTAAQRVFTCLYEKE-LNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQKIFESRAITQYI 75 (225)
Q Consensus 9 ~~~s~~~~~~r~~L~~~g-i~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~l~eS~aI~~yL 75 (225)
+|.|+|+.++-=+|..+| ++|....| .....-.......+-..++|-|-.+|..+.+|.-|.+-.
T Consensus 27 ~P~CGFS~~~vqiL~~~g~v~~~~vnV--L~d~eiR~~lk~~s~WPT~PQLyi~GEfvGG~DIv~Em~ 92 (105)
T COG0278 27 FPQCGFSAQAVQILSACGVVDFAYVDV--LQDPEIRQGLKEYSNWPTFPQLYVNGEFVGGCDIVREMY 92 (105)
T ss_pred CCCCCccHHHHHHHHHcCCcceeEEee--ccCHHHHhccHhhcCCCCCceeeECCEEeccHHHHHHHH
Confidence 678999999999999999 56655544 322222334445577789999999999999887665533
No 161
>PHA02125 thioredoxin-like protein
Probab=93.82 E-value=0.37 Score=29.79 Aligned_cols=52 Identities=19% Similarity=0.303 Sum_probs=37.5
Q ss_pred ceEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEe
Q 038052 3 VIKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEH 60 (225)
Q Consensus 3 ~~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~ 60 (225)
|+.+|+.++|+.|+++.-.|+. +.++...++... .++......-..+|++..
T Consensus 1 ~iv~f~a~wC~~Ck~~~~~l~~--~~~~~~~vd~~~----~~~l~~~~~v~~~PT~~~ 52 (75)
T PHA02125 1 MIYLFGAEWCANCKMVKPMLAN--VEYTYVDVDTDE----GVELTAKHHIRSLPTLVN 52 (75)
T ss_pred CEEEEECCCCHhHHHHHHHHHH--HhheEEeeeCCC----CHHHHHHcCCceeCeEEC
Confidence 3789999999999988887763 566666666432 345555566678999983
No 162
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=93.80 E-value=0.6 Score=28.94 Aligned_cols=57 Identities=21% Similarity=0.206 Sum_probs=37.8
Q ss_pred eEEeccCCChhhHHHHH----HHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCEEeeeh
Q 038052 4 IKVHGAAMSTAAQRVFT----CLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQKIFES 68 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~----~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~l~eS 68 (225)
+++ ..+.||+|.++.- ++...|+.++...+.- .++. ....-..+|++..||.+.+..
T Consensus 3 I~v-~~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~~~------~~~~-~~ygv~~vPalvIng~~~~~G 63 (76)
T PF13192_consen 3 IKV-FSPGCPYCPELVQLLKEAAEELGIEVEIIDIED------FEEI-EKYGVMSVPALVINGKVVFVG 63 (76)
T ss_dssp EEE-ECSSCTTHHHHHHHHHHHHHHTTEEEEEEETTT------HHHH-HHTT-SSSSEEEETTEEEEES
T ss_pred EEE-eCCCCCCcHHHHHHHHHHHHhcCCeEEEEEccC------HHHH-HHcCCCCCCEEEECCEEEEEe
Confidence 677 4566999995554 5666777776655421 2333 566778999999998876654
No 163
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=92.99 E-value=0.33 Score=27.71 Aligned_cols=54 Identities=28% Similarity=0.247 Sum_probs=37.0
Q ss_pred eEEeccCCChhhHHHHHHHH-----hcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEe
Q 038052 4 IKVHGAAMSTAAQRVFTCLY-----EKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEH 60 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L~-----~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~ 60 (225)
+.+|+...|+.|++.+..+. ..++.+....++-... ........+...+|+++.
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~P~~~~ 59 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPA---LEKELKRYGVGGVPTLVV 59 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChH---HhhHHHhCCCccccEEEE
Confidence 46788889999999999999 5566666665553321 111124577889999983
No 164
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=89.93 E-value=0.41 Score=32.09 Aligned_cols=29 Identities=17% Similarity=0.419 Sum_probs=22.8
Q ss_pred eccCCChhhHHHHHHHHhcCCcceEEecc
Q 038052 7 HGAAMSTAAQRVFTCLYEKELNFEFVPVD 35 (225)
Q Consensus 7 y~~~~s~~~~~~r~~L~~~gi~y~~~~v~ 35 (225)
|+.+.|.-|++++-+|+.+|++|+.+.+.
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~ 29 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYK 29 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETT
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhh
Confidence 78899999999999999999999997664
No 165
>PF11801 Tom37_C: Tom37 C-terminal domain; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=89.52 E-value=1.2 Score=32.48 Aligned_cols=40 Identities=23% Similarity=0.298 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhhcCC---CccccCC-ccHhhhhhhhHHHHHHhh
Q 038052 140 LAKVLDVYEARLTKS---KYLASDS-FTLVDMHHLPTINLLMRT 179 (225)
Q Consensus 140 l~~~l~~le~~L~~~---~~l~G~~-~t~aD~~l~~~l~~~~~~ 179 (225)
..+.+..|++.|++. +|++|+. +|-+||.+++.+.-+...
T Consensus 113 a~~~l~~L~~~L~~~~~~~~~f~~~~psslD~L~~ayL~l~l~p 156 (168)
T PF11801_consen 113 AMECLSLLEELLGEWEEARYFFGDSKPSSLDCLAFAYLALLLVP 156 (168)
T ss_pred HHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHhcc
Confidence 467888999999988 9999987 999999999888876643
No 166
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=84.65 E-value=1.6 Score=29.21 Aligned_cols=69 Identities=19% Similarity=0.208 Sum_probs=41.4
Q ss_pred CChhhHHHHHHHHhc---CCcceEEeccCCCCCCCchhHhhh--CCCCCCCeEEe-CC-------------EEeeehHHH
Q 038052 11 MSTAAQRVFTCLYEK---ELNFEFVPVDMASGEHKKEAYLSL--NPFGQVPALEH-GG-------------QKIFESRAI 71 (225)
Q Consensus 11 ~s~~~~~~r~~L~~~---gi~y~~~~v~~~~~~~~~~~~~~~--~P~g~vP~L~~-~~-------------~~l~eS~aI 71 (225)
.||.|..+.=+|... .-..+++.|+... ...+..+. --...+|+|+- +| ..|.++..|
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~R---PR~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I 99 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPR---PRQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRI 99 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCC---chHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHH
Confidence 366666665555432 2235555566532 22333332 22357899983 33 368899999
Q ss_pred HHHHHHhCCCC
Q 038052 72 TQYIAMEYPEK 82 (225)
Q Consensus 72 ~~yL~~~~~~~ 82 (225)
++||.++|+.+
T Consensus 100 ~~~La~r~g~p 110 (112)
T PF11287_consen 100 LRYLAERHGFP 110 (112)
T ss_pred HHHHHHHcCCC
Confidence 99999999743
No 167
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=79.16 E-value=7.5 Score=34.12 Aligned_cols=59 Identities=17% Similarity=0.109 Sum_probs=40.5
Q ss_pred ceEEeccCCChhhHHHHH----HHHhc-CCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCEEeee
Q 038052 3 VIKVHGAAMSTAAQRVFT----CLYEK-ELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQKIFE 67 (225)
Q Consensus 3 ~~~Ly~~~~s~~~~~~r~----~L~~~-gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~l~e 67 (225)
.+++|..+.||+|..+.- ++.+. +|..+.+.+... ++......-..||.+..||.++..
T Consensus 479 ~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~------~~~~~~~~v~~vP~~~i~~~~~~~ 542 (555)
T TIGR03143 479 NIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHF------PDLKDEYGIMSVPAIVVDDQQVYF 542 (555)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECccc------HHHHHhCCceecCEEEECCEEEEe
Confidence 378888999999986544 44444 677766655532 455555667889999988866543
No 168
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=77.91 E-value=6.3 Score=29.96 Aligned_cols=65 Identities=12% Similarity=0.154 Sum_probs=49.2
Q ss_pred cCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCEEeeehHHHHHHH
Q 038052 9 AAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQKIFESRAITQYI 75 (225)
Q Consensus 9 ~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~l~eS~aI~~yL 75 (225)
.|-|++++++--.|...|++|....|--. +.-....+..+-..+.|-|-.+|.-+.++.-|..-+
T Consensus 151 ~P~CGFS~~~v~iL~~~nV~~~~fdIL~D--eelRqglK~fSdWPTfPQlyI~GEFiGGlDIl~~m~ 215 (227)
T KOG0911|consen 151 EPKCGFSRQLVGILQSHNVNYTIFDVLTD--EELRQGLKEFSDWPTFPQLYVKGEFIGGLDILKEMH 215 (227)
T ss_pred cccccccHHHHHHHHHcCCCeeEEeccCC--HHHHHHhhhhcCCCCccceeECCEeccCcHHHHHHh
Confidence 57899999999999999999988766432 222334445677789999999999888877665443
No 169
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=77.65 E-value=1.3 Score=30.12 Aligned_cols=26 Identities=35% Similarity=0.700 Sum_probs=13.5
Q ss_pred CCeEE--eCCEEeeehHHHHHHHHHhCC
Q 038052 55 VPALE--HGGQKIFESRAITQYIAMEYP 80 (225)
Q Consensus 55 vP~L~--~~~~~l~eS~aI~~yL~~~~~ 80 (225)
-|-|. -+|+.++|+.||++|+..-|.
T Consensus 36 ~~~L~~~~~gF~L~e~NAIvrYl~nDF~ 63 (122)
T PF09635_consen 36 GPLLKDKKSGFELFEPNAIVRYLANDFE 63 (122)
T ss_dssp S--EEE-S--S----HHHHHHHHTT--T
T ss_pred cceeeecCCceEEecccHHHHHHHhhcC
Confidence 48885 378999999999999998775
No 170
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=77.51 E-value=3.1 Score=36.08 Aligned_cols=75 Identities=11% Similarity=0.030 Sum_probs=46.2
Q ss_pred ceEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCEEeeeh----HHHHHHHHHh
Q 038052 3 VIKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQKIFES----RAITQYIAME 78 (225)
Q Consensus 3 ~~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~l~eS----~aI~~yL~~~ 78 (225)
.+++|..+.||+|..+.-+++..-+....+..++.++ ..-+++.....-..||.+..++..+.+. ..+++.+.+.
T Consensus 119 ~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~-~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~~~~ 197 (517)
T PRK15317 119 HFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDG-ALFQDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAKLDTG 197 (517)
T ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEc-hhCHhHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhcc
Confidence 3789999999999977666655444322222222222 2235566666677999999887766652 3455555543
No 171
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=77.24 E-value=2.9 Score=36.29 Aligned_cols=75 Identities=12% Similarity=0.085 Sum_probs=46.2
Q ss_pred ceEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCEEeeeh----HHHHHHHHHh
Q 038052 3 VIKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQKIFES----RAITQYIAME 78 (225)
Q Consensus 3 ~~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~l~eS----~aI~~yL~~~ 78 (225)
.+++|..+.||+|-.+.-+++...+....+..++.++.. -+++.....-..||.+..++..+.+. ..+++.+.+.
T Consensus 120 ~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~-~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~l~~~ 198 (515)
T TIGR03140 120 HFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGAL-FQDEVEALGIQGVPAVFLNGEEFHNGRMDLAELLEKLEET 198 (515)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchh-CHHHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhhc
Confidence 378999999999998777766655542222233332222 24555556667999999887766653 3344444433
No 172
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=77.07 E-value=17 Score=23.35 Aligned_cols=58 Identities=9% Similarity=0.151 Sum_probs=34.4
Q ss_pred eEEeccCCChhhHHHHHHHHh----cCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEE--eCCEEe
Q 038052 4 IKVHGAAMSTAAQRVFTCLYE----KELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALE--HGGQKI 65 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L~~----~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~--~~~~~l 65 (225)
+.+|+.+.|+.|....-.++. .+-.+....++... .+++....--..+|++. .+|.++
T Consensus 17 lv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~----~~~l~~~~~v~~vPt~~i~~~g~~v 80 (97)
T cd02949 17 LVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDE----DQEIAEAAGIMGTPTVQFFKDKELV 80 (97)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCC----CHHHHHHCCCeeccEEEEEECCeEE
Confidence 567778899999987766654 11123344455432 24444444446889886 466554
No 173
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=73.77 E-value=13 Score=24.66 Aligned_cols=72 Identities=14% Similarity=0.072 Sum_probs=42.1
Q ss_pred EeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCc-hhHhhh---CCCCCCCeEEeCCE-EeeehHHHHHHHHHh
Q 038052 6 VHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKK-EAYLSL---NPFGQVPALEHGGQ-KIFESRAITQYIAME 78 (225)
Q Consensus 6 Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~-~~~~~~---~P~g~vP~L~~~~~-~l~eS~aI~~yL~~~ 78 (225)
|+|...||+|.+..-.+...+-.-....++........ .....+ +....+-+ ..+|. +..++.|+..-+...
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~g~~~~~G~~A~~~l~~~~ 77 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQALLASYGISPEDADSRLHL-IDDGERVYRGSDAVLRLLRRL 77 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEE-ecCCCEEEEcHHHHHHHHHHc
Confidence 46778899999888888777654444444442211110 011112 22234444 55665 999999999886654
No 174
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=72.46 E-value=28 Score=23.73 Aligned_cols=62 Identities=10% Similarity=0.154 Sum_probs=33.6
Q ss_pred eEEeccCCChhhHHHHHH----HHhcCCcceEEeccCCCCCCCc-----hhHhhh----CCCCCCCeEE--eCCEEe
Q 038052 4 IKVHGAAMSTAAQRVFTC----LYEKELNFEFVPVDMASGEHKK-----EAYLSL----NPFGQVPALE--HGGQKI 65 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~----L~~~gi~y~~~~v~~~~~~~~~-----~~~~~~----~P~g~vP~L~--~~~~~l 65 (225)
+..++.++||+|+.+.=. .+..++++-...++-....... .++... .....+|+++ .+|..+
T Consensus 27 iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~Gk~v 103 (122)
T TIGR01295 27 TFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDGKQV 103 (122)
T ss_pred EEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCCeEE
Confidence 566888999999974443 4444455555544432110111 133332 2345599998 466543
No 175
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=70.45 E-value=14 Score=24.01 Aligned_cols=55 Identities=11% Similarity=-0.009 Sum_probs=32.1
Q ss_pred eEEeccCCChhhHHHHHHH--------HhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEE
Q 038052 4 IKVHGAAMSTAAQRVFTCL--------YEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALE 59 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L--------~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~ 59 (225)
+..|+.++|+.|++..-.+ ...+ .+....++....+...+++.+...-..+|++.
T Consensus 15 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~ 77 (104)
T cd02953 15 FVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGVFGPPTYL 77 (104)
T ss_pred EEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEE
Confidence 5577888999999775332 1222 45555556543222234455555566799886
No 176
>PHA03075 glutaredoxin-like protein; Provisional
Probab=68.55 E-value=10 Score=25.63 Aligned_cols=68 Identities=19% Similarity=0.284 Sum_probs=47.6
Q ss_pred Cc-ceEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCC-EEeeehHHHHHHHHHh
Q 038052 1 MG-VIKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGG-QKIFESRAITQYIAME 78 (225)
Q Consensus 1 m~-~~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~-~~l~eS~aI~~yL~~~ 78 (225)
|. .+.|++-|.|+-|..+.-+|.+..=+|+..+|+..+= .+-.|.+=+|..|+ ..+ -..+..||...
T Consensus 1 mK~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVNIlSf---------FsK~g~v~~lg~d~~y~l--Inn~~~~lgne 69 (123)
T PHA03075 1 MKKTLILFGKPLCSVCESISEALKELEDEYDILRVNILSF---------FSKDGQVKVLGMDKGYTL--INNFFKHLGNE 69 (123)
T ss_pred CCceEEEeCCcccHHHHHHHHHHHHhhccccEEEEEeeee---------eccCCceEEEecccceeh--HHHHHHhhccc
Confidence 55 6899999999999999999999999999999987531 12235666666433 222 23456666644
Q ss_pred C
Q 038052 79 Y 79 (225)
Q Consensus 79 ~ 79 (225)
+
T Consensus 70 ~ 70 (123)
T PHA03075 70 Y 70 (123)
T ss_pred E
Confidence 3
No 177
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=68.23 E-value=25 Score=21.46 Aligned_cols=55 Identities=16% Similarity=0.184 Sum_probs=34.7
Q ss_pred eEEeccCCChhhHHHHHHHHh-----cCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEE--eCCEE
Q 038052 4 IKVHGAAMSTAAQRVFTCLYE-----KELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALE--HGGQK 64 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L~~-----~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~--~~~~~ 64 (225)
+.+++.+.|+.|+...-.++. .++.+-...++- ...+...-....+|++. .+|..
T Consensus 14 ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~------~~~~~~~~~v~~~P~~~~~~~g~~ 75 (93)
T cd02947 14 VVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDE------NPELAEEYGVRSIPTFLFFKNGKE 75 (93)
T ss_pred EEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCC------ChhHHHhcCcccccEEEEEECCEE
Confidence 567788889999988877766 555555443332 23344444456789987 35553
No 178
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=64.64 E-value=29 Score=23.12 Aligned_cols=53 Identities=11% Similarity=-0.028 Sum_probs=33.6
Q ss_pred eEEe-ccCCChhhHHHHHHHHhcCCcc---eEEeccCCCCCCCchhHhhhCCCCCCCeEEe
Q 038052 4 IKVH-GAAMSTAAQRVFTCLYEKELNF---EFVPVDMASGEHKKEAYLSLNPFGQVPALEH 60 (225)
Q Consensus 4 ~~Ly-~~~~s~~~~~~r~~L~~~gi~y---~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~ 60 (225)
+.++ +.++|++|+.++-+++...-.+ +...++.. ..++....-.-..+|++..
T Consensus 25 vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d----~~~~l~~~~~v~~vPt~~i 81 (113)
T cd02975 25 LVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFD----EDKEKAEKYGVERVPTTIF 81 (113)
T ss_pred EEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCC----cCHHHHHHcCCCcCCEEEE
Confidence 4444 5679999998877776544322 33444443 2356666666778999983
No 179
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=62.48 E-value=5.2 Score=30.51 Aligned_cols=60 Identities=10% Similarity=0.134 Sum_probs=46.2
Q ss_pred HHHHHHHHHhhcCCCccccCCccHhhhhhhhHHHHHHhhhhhhhhccCchHHHHHHHHhcChhHHH
Q 038052 141 AKVLDVYEARLTKSKYLASDSFTLVDMHHLPTINLLMRTQVKQLFNARPRVSAWVADITARPAWTK 206 (225)
Q Consensus 141 ~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~p~L~~~~~~~~~~p~~~~ 206 (225)
.+.+..++..|.++.|.-|.+++-+|+.+|..+.-- ..-..+++..+|+..+.+..+...
T Consensus 10 ~~glk~l~~sLA~ks~~~g~~~s~edv~vf~al~~e------p~s~~~v~~~~w~~~l~a~~~~~~ 69 (231)
T KOG1668|consen 10 PAGLKKLNKSLAEKSYIEGYQLSKEDVVVFAALGVE------PQSARLVNAERWYSKLEALLRLLA 69 (231)
T ss_pred hhhhhhhhHhhhcccCCCCCCcccccceeehhcccC------cchhhhhHHHHHHHHHHHHHHHHh
Confidence 567889999999999999999999999988655321 123456777888888887766654
No 180
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=61.61 E-value=39 Score=25.50 Aligned_cols=53 Identities=9% Similarity=-0.035 Sum_probs=34.2
Q ss_pred eEEeccCCChhhHHHHHHHHhcCC---cceEEeccCCCCCCCchhHhhhCCCCCCCeEEe
Q 038052 4 IKVHGAAMSTAAQRVFTCLYEKEL---NFEFVPVDMASGEHKKEAYLSLNPFGQVPALEH 60 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L~~~gi---~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~ 60 (225)
+++|+.++||+|..+.-+++..-- ......++.. ..++......-..+|++..
T Consensus 137 I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~----~~~~~~~~~~V~~vPtl~i 192 (215)
T TIGR02187 137 IEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEAN----ENPDLAEKYGVMSVPKIVI 192 (215)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCC----CCHHHHHHhCCccCCEEEE
Confidence 567899999999988877765322 1223334543 2355555566668999984
No 181
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=60.24 E-value=41 Score=21.27 Aligned_cols=69 Identities=16% Similarity=0.245 Sum_probs=44.0
Q ss_pred eEEeccCCChhhHHHHHHHH-----hcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEE--eCCEEee------ehHH
Q 038052 4 IKVHGAAMSTAAQRVFTCLY-----EKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALE--HGGQKIF------ESRA 70 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L~-----~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~--~~~~~l~------eS~a 70 (225)
+..++.+.|+.|+...=.++ ..+ ++....++... .+.+.+.-.-..+|++. .+|.... +...
T Consensus 21 vv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~----~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~ 95 (103)
T PF00085_consen 21 VVYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDE----NKELCKKYGVKSVPTIIFFKNGKEVKRYNGPRNAES 95 (103)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTT----SHHHHHHTTCSSSSEEEEEETTEEEEEEESSSSHHH
T ss_pred EEEEeCCCCCccccccceeccccccccc-ccccchhhhhc----cchhhhccCCCCCCEEEEEECCcEEEEEECCCCHHH
Confidence 56778889999998774442 332 55555566542 35566666678899998 4665432 4456
Q ss_pred HHHHHHH
Q 038052 71 ITQYIAM 77 (225)
Q Consensus 71 I~~yL~~ 77 (225)
|..+|.+
T Consensus 96 l~~~i~~ 102 (103)
T PF00085_consen 96 LIEFIEK 102 (103)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 7776654
No 182
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=58.35 E-value=19 Score=25.27 Aligned_cols=72 Identities=11% Similarity=0.007 Sum_probs=48.5
Q ss_pred ceEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhh----CCCCCCCeEEeCCEEeee---hHHHHHHH
Q 038052 3 VIKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSL----NPFGQVPALEHGGQKIFE---SRAITQYI 75 (225)
Q Consensus 3 ~~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~----~P~g~vP~L~~~~~~l~e---S~aI~~yL 75 (225)
.+..|+.|.|++|..-.=.|+.+|...+.+..+-. ...++. .-+...=+.+.+|..+-+ -.+|.+.|
T Consensus 27 ~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d~------~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI~~ll 100 (149)
T COG3019 27 EMVVYKSPNCGCCDEWAQHMKANGFEVKVVETDDF------LALKRRLGIPYEMQSCHTAVINGYYVEGHVPAEAIARLL 100 (149)
T ss_pred eEEEEeCCCCccHHHHHHHHHhCCcEEEEeecCcH------HHHHHhcCCChhhccccEEEEcCEEEeccCCHHHHHHHH
Confidence 58899999999999888889888888777755422 111110 111233355667776654 47899999
Q ss_pred HHhCC
Q 038052 76 AMEYP 80 (225)
Q Consensus 76 ~~~~~ 80 (225)
++..+
T Consensus 101 ~~~pd 105 (149)
T COG3019 101 AEKPD 105 (149)
T ss_pred hCCCC
Confidence 98873
No 183
>PF10022 DUF2264: Uncharacterized protein conserved in bacteria (DUF2264); InterPro: IPR016624 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=58.02 E-value=1.1e+02 Score=25.45 Aligned_cols=141 Identities=11% Similarity=0.067 Sum_probs=79.3
Q ss_pred CCeEEeCCEEeeehHHHHHHHHHhCCCCCCCCC-CCC-ccchHHHHHHHHHhhhcch----hHHHHHHHHHHhccCCCCC
Q 038052 55 VPALEHGGQKIFESRAITQYIAMEYPEKGTRLA-SAD-KPSSSFLIWKEVEAHQFDP----VASKLTWEIVLKPMFGMTI 128 (225)
Q Consensus 55 vP~L~~~~~~l~eS~aI~~yL~~~~~~~~~~l~-p~~-~~~a~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 128 (225)
.+.+.+.+..+.|+.+|..-|...-. .++ |-+ .++.++-.|+.-+...-.. .+...+....+... |.+.
T Consensus 98 w~~~~~~dQ~~VEaa~la~aL~~a~~----~lW~~L~~~~k~~l~~wL~~~~~~~~~~nNW~lF~v~v~~~L~~~-G~~~ 172 (361)
T PF10022_consen 98 WGFIGDYDQRLVEAASLALALLRAPE----WLWDPLDEEEKENLVDWLKQIRGIKPPDNNWLLFRVMVEAFLKKV-GEEY 172 (361)
T ss_pred cCCcccchhhHhHHHHHHHHHHHCHH----HHHhhCCHHHHHHHHHHHHhcCcCCCccchhHHHHHHHHHHHHHc-CCCC
Confidence 44445566889999999999987533 333 234 6777777777654432211 12223333333332 4444
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCccHhhhhhhhHHHHHHhhhhhhhhccC-chHHHHHHHHhcChhHHHH
Q 038052 129 DPTMVEEYKAKLAKVLDVYEARLTKSKYLASDSFTLVDMHHLPTINLLMRTQVKQLFNAR-PRVSAWVADITARPAWTKV 207 (225)
Q Consensus 129 ~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~-p~L~~~~~~~~~~p~~~~~ 207 (225)
++ .+++..++.+|+.-.+.+|+....-.-.|.+..-+++.....-....-+.. +...++.+|...-...-+.
T Consensus 173 d~-------~~i~~~l~~~e~~Y~GdGWY~DG~~~~~DYYns~aih~y~l~~~~~~~~~~~~~~~~~~~Ra~~fa~~~~~ 245 (361)
T PF10022_consen 173 DE-------ERIDYDLERIEEWYLGDGWYSDGPEFQFDYYNSWAIHPYLLLYARLMGDEDPERAARYRQRAQRFAEDYER 245 (361)
T ss_pred cH-------HHHHHHHHHHHHHhccCCccccCCccCCcchHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH
Confidence 43 667778888888766666776555567888874444444333111111222 2466677766654443333
No 184
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=56.91 E-value=56 Score=21.77 Aligned_cols=61 Identities=8% Similarity=-0.013 Sum_probs=38.6
Q ss_pred eEEeccCCChhhHHHHHHHHhcCC---cceEEeccCCCCCCCchhHhhhCCCCCCCeEE--eCCEEeeeh
Q 038052 4 IKVHGAAMSTAAQRVFTCLYEKEL---NFEFVPVDMASGEHKKEAYLSLNPFGQVPALE--HGGQKIFES 68 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L~~~gi---~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~--~~~~~l~eS 68 (225)
+..++.+.|+.|+.+.-.++...- ......++... .++..+...-..+|++. .+|..+...
T Consensus 26 vV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~----~~~l~~~~~v~~vPt~l~fk~G~~v~~~ 91 (113)
T cd02989 26 VCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEK----APFLVEKLNIKVLPTVILFKNGKTVDRI 91 (113)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEccc----CHHHHHHCCCccCCEEEEEECCEEEEEE
Confidence 456778899999977766644221 13455566532 34455556677899998 478776543
No 185
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=55.74 E-value=18 Score=26.34 Aligned_cols=35 Identities=14% Similarity=0.146 Sum_probs=27.1
Q ss_pred ceEEeccCCChhhH----HHHHHHHhc-CCcceEEeccCC
Q 038052 3 VIKVHGAAMSTAAQ----RVFTCLYEK-ELNFEFVPVDMA 37 (225)
Q Consensus 3 ~~~Ly~~~~s~~~~----~~r~~L~~~-gi~y~~~~v~~~ 37 (225)
++++|+...||||. +++-+++.. ++.++.+++.+.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~ 40 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLR 40 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSS
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccc
Confidence 47899999999998 445555566 888888888764
No 186
>PTZ00051 thioredoxin; Provisional
Probab=52.80 E-value=57 Score=20.60 Aligned_cols=58 Identities=17% Similarity=0.214 Sum_probs=33.2
Q ss_pred eEEeccCCChhhHHHHHHHHhcC---CcceEEeccCCCCCCCchhHhhhCCCCCCCeEE--eCCEEe
Q 038052 4 IKVHGAAMSTAAQRVFTCLYEKE---LNFEFVPVDMASGEHKKEAYLSLNPFGQVPALE--HGGQKI 65 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L~~~g---i~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~--~~~~~l 65 (225)
+..++.++|+.|++..-.++... -.+....++.. ....+.+.-.-..+|++. .+|..+
T Consensus 22 li~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~----~~~~~~~~~~v~~~Pt~~~~~~g~~~ 84 (98)
T PTZ00051 22 IVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVD----ELSEVAEKENITSMPTFKVFKNGSVV 84 (98)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECc----chHHHHHHCCCceeeEEEEEeCCeEE
Confidence 55778889999997765554421 12333344432 124444445557889887 355443
No 187
>TIGR02681 phage_pRha phage regulatory protein, rha family. Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that pRha is a phage regulatory protein.
Probab=49.21 E-value=22 Score=23.80 Aligned_cols=26 Identities=15% Similarity=0.176 Sum_probs=21.7
Q ss_pred CCeEE-eCCEEeeehHHHHHHHHHhCC
Q 038052 55 VPALE-HGGQKIFESRAITQYIAMEYP 80 (225)
Q Consensus 55 vP~L~-~~~~~l~eS~aI~~yL~~~~~ 80 (225)
+|.+. .+|.+++.|..|+++....+.
T Consensus 2 ~~~v~~~~~~~~ttS~~IAe~fgK~H~ 28 (108)
T TIGR02681 2 FPKVFTKRNQVVTDSLTMAQMFGKRHD 28 (108)
T ss_pred CceEEEECCEEEEeHHHHHHHHCcchH
Confidence 35555 799999999999999998865
No 188
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=48.21 E-value=36 Score=26.85 Aligned_cols=59 Identities=17% Similarity=0.098 Sum_probs=44.6
Q ss_pred hhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhC----CCCCCCeEEeCCEEeeehHHHHHH
Q 038052 14 AAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLN----PFGQVPALEHGGQKIFESRAITQY 74 (225)
Q Consensus 14 ~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~----P~g~vP~L~~~~~~l~eS~aI~~y 74 (225)
.|..||.+|+-.+|.|+.+.|.|... ..+++..+- -.-.+|.+-.+|..|.+...|.+-
T Consensus 149 ~C~~VR~ilesf~V~v~ERDVSMd~~--fr~EL~~~lg~~~~~~~LPrVFV~GryIGgaeeV~~L 211 (281)
T KOG2824|consen 149 DCNAVRAILESFRVKVDERDVSMDSE--FREELQELLGEDEKAVSLPRVFVKGRYIGGAEEVVRL 211 (281)
T ss_pred HHHHHHHHHHhCceEEEEecccccHH--HHHHHHHHHhcccccCccCeEEEccEEeccHHHhhhh
Confidence 47799999999999999999998642 334444332 235789777899999988877653
No 189
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=47.85 E-value=20 Score=22.30 Aligned_cols=21 Identities=14% Similarity=0.493 Sum_probs=19.3
Q ss_pred hhhHHHHHHHHhcCCcceEEe
Q 038052 13 TAAQRVFTCLYEKELNFEFVP 33 (225)
Q Consensus 13 ~~~~~~r~~L~~~gi~y~~~~ 33 (225)
+|++|+.-.++..||+|+..+
T Consensus 16 GF~rk~L~I~E~~~is~Eh~P 36 (76)
T cd04911 16 GFGRKLLSILEDNGISYEHMP 36 (76)
T ss_pred cHHHHHHHHHHHcCCCEeeec
Confidence 699999999999999999875
No 190
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=46.84 E-value=87 Score=21.02 Aligned_cols=58 Identities=17% Similarity=0.216 Sum_probs=30.7
Q ss_pred eEEeccCCChhhHHHHHHHHh------cCCcceEEeccCCCCCCCchhHhhhCCCC-CCCeEE--e-CCEEe
Q 038052 4 IKVHGAAMSTAAQRVFTCLYE------KELNFEFVPVDMASGEHKKEAYLSLNPFG-QVPALE--H-GGQKI 65 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L~~------~gi~y~~~~v~~~~~~~~~~~~~~~~P~g-~vP~L~--~-~~~~l 65 (225)
+..++.+.|+.|++..-.+.. .+..|....++ .... +.....+..| .+|++. + +|.++
T Consensus 23 lV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd--~~~~--~~~~~~~~~g~~vPt~~f~~~~Gk~~ 90 (117)
T cd02959 23 MLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLE--DDEE--PKDEEFSPDGGYIPRILFLDPSGDVH 90 (117)
T ss_pred EEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEec--CCCC--chhhhcccCCCccceEEEECCCCCCc
Confidence 445677889999977555544 22234443333 2111 1112345554 499987 2 55543
No 191
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=46.84 E-value=47 Score=20.91 Aligned_cols=57 Identities=14% Similarity=0.132 Sum_probs=34.2
Q ss_pred eEEeccCCChhhHHHHHHHHhcCC----cceEEeccCCCCCCCchhHhhhCCCCCCCeEE--eCCEE
Q 038052 4 IKVHGAAMSTAAQRVFTCLYEKEL----NFEFVPVDMASGEHKKEAYLSLNPFGQVPALE--HGGQK 64 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L~~~gi----~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~--~~~~~ 64 (225)
+..++.++|+.|++..-.++...- .+....++... .+.+.+.-.-..+|++. .+|..
T Consensus 16 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~----~~~l~~~~~i~~~Pt~~~~~~g~~ 78 (96)
T cd02956 16 VVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDA----QPQIAQQFGVQALPTVYLFAAGQP 78 (96)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccC----CHHHHHHcCCCCCCEEEEEeCCEE
Confidence 456677889999877655543222 24444555432 34555545556899997 56654
No 192
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=45.94 E-value=14 Score=28.23 Aligned_cols=58 Identities=21% Similarity=0.243 Sum_probs=34.2
Q ss_pred ceEEeccCCChhhHH----HHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCEEeeehHHHHHHHHHh
Q 038052 3 VIKVHGAAMSTAAQR----VFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQKIFESRAITQYIAME 78 (225)
Q Consensus 3 ~~~Ly~~~~s~~~~~----~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~l~eS~aI~~yL~~~ 78 (225)
.+.+|....||||.. +.-++...+-.+. ..+. -+|+-..|.+... ...+-+||..+
T Consensus 7 ~I~v~sD~vCPwC~ig~~rL~ka~~~~~~~~~-v~i~-------------w~pf~l~p~~~~~------g~~~~~~l~~k 66 (225)
T COG2761 7 EIDVFSDVVCPWCYIGKRRLEKALAEYPQEVR-VEIR-------------WRPFELDPDLPPE------GLDRKEYLAQK 66 (225)
T ss_pred EEEEEeCCcCchhhcCHHHHHHHHHhcCccee-EEEE-------------ecccccCCCCCcc------cccHHHHHHHH
Confidence 588899999999984 3444444443332 2222 2455566666543 34556677777
Q ss_pred CC
Q 038052 79 YP 80 (225)
Q Consensus 79 ~~ 80 (225)
++
T Consensus 67 ~g 68 (225)
T COG2761 67 YG 68 (225)
T ss_pred hC
Confidence 76
No 193
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=45.24 E-value=98 Score=21.17 Aligned_cols=64 Identities=14% Similarity=0.089 Sum_probs=36.2
Q ss_pred EEeccCCChhhHHHHH-HH------HhcCCcceEEeccCCCCCCCchhHhh----hCCCCCCCeEE---eCCEEeeeh
Q 038052 5 KVHGAAMSTAAQRVFT-CL------YEKELNFEFVPVDMASGEHKKEAYLS----LNPFGQVPALE---HGGQKIFES 68 (225)
Q Consensus 5 ~Ly~~~~s~~~~~~r~-~L------~~~gi~y~~~~v~~~~~~~~~~~~~~----~~P~g~vP~L~---~~~~~l~eS 68 (225)
..++.+.|++|++.-- .+ ...+-.|..+.++..........+.+ ....+.+|+++ .+|..+..+
T Consensus 20 l~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~~~~~~ 97 (124)
T cd02955 20 LSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDLKPFFGG 97 (124)
T ss_pred EEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEeee
Confidence 3467788999987642 22 22233577777776532111111211 23456789987 367777765
No 194
>PF11732 Thoc2: Transcription- and export-related complex subunit; InterPro: IPR021726 The THO/TREX complex is the transcription- and export-related complex associated with spliceosomes that preferentially deal with spliced mRNAs as opposed to unspliced mRNAs. Thoc2 plays a role in RNA polymerase II (RNA pol II)-dependent transcription and is required for the stability of DNA repeats []. In humans, the TRE complex is comprised of the exon-junction-associated proteins Aly/REF and UAP56 together with the THO proteins THOC1 (hHpr1/p84), Thoc2 (hRlr1), THOC3 (hTex1), THOC5 (fSAP79), THOC6 (fSAP35), and THOC7 (fSAP24). Although much evidence indicates that the function of the TREX complex as an adaptor between the mRNA and components of the export machinery is conserved among eukaryotes, in Drosophila the majority of mRNAs can be exported from the nucleus independently of the THO complex []. This entry represents a conserved domain found towards the N terminus of these proteins.
Probab=44.53 E-value=36 Score=21.26 Aligned_cols=42 Identities=17% Similarity=0.371 Sum_probs=29.2
Q ss_pred CccccCCccHhhhhhhhHHHHHHhhhhhhhhccCchHHHHHHHHh
Q 038052 155 KYLASDSFTLVDMHHLPTINLLMRTQVKQLFNARPRVSAWVADIT 199 (225)
Q Consensus 155 ~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~p~L~~~~~~~~ 199 (225)
+|+. .+++ |+..|+++.++...+.....+.--++..|.+++.
T Consensus 35 ky~t--~l~~-DvL~~~ll~~L~~~~r~~~k~dg~~~s~Wlq~La 76 (77)
T PF11732_consen 35 KYFT--DLGY-DVLTFCLLERLSNPGRSRLKDDGTNISQWLQSLA 76 (77)
T ss_pred hhcc--hhhH-HHHHHHHHHHHhcccchhcCcCCCCHHHHHHHHh
Confidence 5552 2333 8888899888886544445556678999999875
No 195
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=44.25 E-value=1.1e+02 Score=21.49 Aligned_cols=75 Identities=13% Similarity=0.061 Sum_probs=44.4
Q ss_pred ceEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCC----CCCeEEeCCEEeeehHHHHHHHHHh
Q 038052 3 VIKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFG----QVPALEHGGQKIFESRAITQYIAME 78 (225)
Q Consensus 3 ~~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g----~vP~L~~~~~~l~eS~aI~~yL~~~ 78 (225)
+++++|...|+.|-..--+|..+.-.=.....++... .........+.. ..=+++.+|..+.+|.|+++-+...
T Consensus 9 ~~vvlyDG~C~lC~~~vrfLi~~D~~~~i~f~~~q~e--~g~~~l~~~~l~~~~~~s~~~~~~g~~~~~sdA~~~i~~~L 86 (137)
T COG3011 9 DLVVLYDGVCPLCDGWVRFLIRRDQGGRIRFAALQSE--PGQALLEAAGLDPEDVDSVLLVEAGQLLVGSDAAIRILRLL 86 (137)
T ss_pred CEEEEECCcchhHHHHHHHHHHhccCCcEEEEeccCc--hhhhHHhhcCCChhhhheeeEecCCceEeccHHHHHHHHHC
Confidence 4788888889988765555555555444444444321 112222222221 1223346899999999999988766
Q ss_pred C
Q 038052 79 Y 79 (225)
Q Consensus 79 ~ 79 (225)
-
T Consensus 87 ~ 87 (137)
T COG3011 87 P 87 (137)
T ss_pred C
Confidence 4
No 196
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=44.02 E-value=48 Score=21.09 Aligned_cols=54 Identities=11% Similarity=0.060 Sum_probs=28.1
Q ss_pred eEEeccCCChhhHHHHHHH----HhcC--CcceEEeccCCCCCCCchhHhhhCCCCCCCeEE
Q 038052 4 IKVHGAAMSTAAQRVFTCL----YEKE--LNFEFVPVDMASGEHKKEAYLSLNPFGQVPALE 59 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L----~~~g--i~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~ 59 (225)
+.+++.++|+.|++..-.+ +... -.+....++... +..+.+.....-..+|+++
T Consensus 21 ~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~--~~~~~~~~~~~i~~~Pt~~ 80 (104)
T cd02997 21 LVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTK--PEHDALKEEYNVKGFPTFK 80 (104)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCC--CccHHHHHhCCCccccEEE
Confidence 5677788899998764222 2211 122333334332 1234444444455789886
No 197
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=42.59 E-value=37 Score=25.42 Aligned_cols=34 Identities=15% Similarity=0.146 Sum_probs=25.3
Q ss_pred ceEEeccCCChhhHH----HHHHHHhcCCcceEEeccC
Q 038052 3 VIKVHGAAMSTAAQR----VFTCLYEKELNFEFVPVDM 36 (225)
Q Consensus 3 ~~~Ly~~~~s~~~~~----~r~~L~~~gi~y~~~~v~~ 36 (225)
+|.+|+...||||.- ++-++...+++.+.+++.+
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~~L 39 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPVFL 39 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEeeeh
Confidence 588999999999984 4445556777777777655
No 198
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=42.20 E-value=25 Score=20.79 Aligned_cols=32 Identities=16% Similarity=-0.049 Sum_probs=20.9
Q ss_pred eEEeccCCChhhHHHHHHHHhcCCcceEEecc
Q 038052 4 IKVHGAAMSTAAQRVFTCLYEKELNFEFVPVD 35 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~ 35 (225)
.++|......-+..++-+|+..||++......
T Consensus 1 ~~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~ 32 (67)
T PF09413_consen 1 KKLYTAGDPIEAELIKGLLEENGIPAFVKNEH 32 (67)
T ss_dssp EEEEEE--HHHHHHHHHHHHHTT--EE--S--
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcEEEECCc
Confidence 36788887778999999999999999987544
No 199
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=41.68 E-value=88 Score=19.59 Aligned_cols=58 Identities=10% Similarity=0.096 Sum_probs=34.8
Q ss_pred eEEeccCCChhhHHHHHHHHhc----CCcceEEeccCCCCCCCchhHhhhCCCCCCCeEE--eCCEEe
Q 038052 4 IKVHGAAMSTAAQRVFTCLYEK----ELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALE--HGGQKI 65 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L~~~----gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~--~~~~~l 65 (225)
+..++.+.|+.|++..-.|+.. +-.+....++... .+++...-.-..+|++. .+|..+
T Consensus 18 ~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~----~~~~~~~~~i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 18 VLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEE----LPEISEKFEITAVPTFVFFRNGTIV 81 (97)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEcccc----CHHHHHhcCCccccEEEEEECCEEE
Confidence 4667788999999887666542 3345555555432 23343333345699887 466553
No 200
>PRK10996 thioredoxin 2; Provisional
Probab=40.74 E-value=1.2e+02 Score=20.97 Aligned_cols=58 Identities=12% Similarity=0.175 Sum_probs=34.4
Q ss_pred eEEeccCCChhhHHHHHHHHh----cCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEE--eCCEEe
Q 038052 4 IKVHGAAMSTAAQRVFTCLYE----KELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALE--HGGQKI 65 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L~~----~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~--~~~~~l 65 (225)
+..++.++|+.|+...-.+.. .+-.+....++... .+++.+...-..+|++. .+|..+
T Consensus 56 vv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~----~~~l~~~~~V~~~Ptlii~~~G~~v 119 (139)
T PRK10996 56 VIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEA----ERELSARFRIRSIPTIMIFKNGQVV 119 (139)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCC----CHHHHHhcCCCccCEEEEEECCEEE
Confidence 556778899999875444433 23234445555532 34555445557899987 466654
No 201
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=39.94 E-value=92 Score=20.06 Aligned_cols=57 Identities=9% Similarity=0.003 Sum_probs=30.7
Q ss_pred eEEeccCCChhhHHHHHHHHhc----C-CcceEEeccCCCCCCCchhHhhhCCCCCCCeEE--eCCEEe
Q 038052 4 IKVHGAAMSTAAQRVFTCLYEK----E-LNFEFVPVDMASGEHKKEAYLSLNPFGQVPALE--HGGQKI 65 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L~~~----g-i~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~--~~~~~l 65 (225)
+..++.++|+.|+...-.++.. + -......++.. .++..+..--..+|++. .+|..+
T Consensus 21 vv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-----~~~~~~~~~v~~~Pt~~~~~~g~~~ 84 (102)
T cd02948 21 VVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-----TIDTLKRYRGKCEPTFLFYKNGELV 84 (102)
T ss_pred EEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-----CHHHHHHcCCCcCcEEEEEECCEEE
Confidence 4567888999998665444332 1 11233333332 13334444456788876 466543
No 202
>PRK09266 hypothetical protein; Provisional
Probab=39.28 E-value=35 Score=26.69 Aligned_cols=60 Identities=17% Similarity=0.082 Sum_probs=42.1
Q ss_pred HHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCEEeeehHHHHHHHHHhCC
Q 038052 21 CLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQKIFESRAITQYIAMEYP 80 (225)
Q Consensus 21 ~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~l~eS~aI~~yL~~~~~ 80 (225)
.++..|++.+...+++.+-..-.+-|..-+-.|-+||-..|+..+.....|.+.|.+.+.
T Consensus 200 ~~~~~g~~v~e~~i~~~eL~~adevfltnSl~gi~pV~~i~~~~~~~~~~~~~~l~~~~~ 259 (266)
T PRK09266 200 GLERLGIPQRTRPVTLADLGRFAGAFACNAWRGQRAVSAIDDVALPDSHALLELLRRAYE 259 (266)
T ss_pred HHHHcCCeeEEEECCHHHHHHhhHhhhhcCccceEEEEEECCEECCCCchHHHHHHHHHH
Confidence 556779999999887653222223444556679999999888887655678888877764
No 203
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=38.47 E-value=64 Score=17.09 Aligned_cols=26 Identities=19% Similarity=0.406 Sum_probs=21.1
Q ss_pred CCCCCCeEEeCCEEeeehHHHHHHHH
Q 038052 51 PFGQVPALEHGGQKIFESRAITQYIA 76 (225)
Q Consensus 51 P~g~vP~L~~~~~~l~eS~aI~~yL~ 76 (225)
-.|.+|....++..++....|.+|+.
T Consensus 23 ~~g~i~~~~~g~~~~~~~~~l~~~~~ 48 (49)
T TIGR01764 23 HEGELPAYRVGRHYRIPREDVDEYLE 48 (49)
T ss_pred HcCCCCeEEeCCeEEEeHHHHHHHHh
Confidence 35778887778888999999988875
No 204
>PRK13947 shikimate kinase; Provisional
Probab=36.83 E-value=48 Score=23.64 Aligned_cols=33 Identities=12% Similarity=-0.086 Sum_probs=29.2
Q ss_pred CcceEEeccCCChhhHHHHHHHHhcCCcceEEe
Q 038052 1 MGVIKVHGAAMSTAAQRVFTCLYEKELNFEFVP 33 (225)
Q Consensus 1 m~~~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~ 33 (225)
|.++.|.+.+.|+-+...+.+.+..|.+|-...
T Consensus 1 m~~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 1 MKNIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 778999999999999999999999999886543
No 205
>PRK13949 shikimate kinase; Provisional
Probab=36.75 E-value=51 Score=23.84 Aligned_cols=33 Identities=18% Similarity=-0.023 Sum_probs=29.3
Q ss_pred CcceEEeccCCChhhHHHHHHHHhcCCcceEEe
Q 038052 1 MGVIKVHGAAMSTAAQRVFTCLYEKELNFEFVP 33 (225)
Q Consensus 1 m~~~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~ 33 (225)
|..+.|++.+.|+-+--.+++.+..|++|....
T Consensus 1 m~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 1 MARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 778999999999999999999999998877654
No 206
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=35.72 E-value=1.9e+02 Score=21.78 Aligned_cols=52 Identities=17% Similarity=0.100 Sum_probs=31.7
Q ss_pred eEEecc---CCChhhHHHHHHHHhcC-----CcceEEeccCCCCCCCchhHhhhCCCCCCCeEE
Q 038052 4 IKVHGA---AMSTAAQRVFTCLYEKE-----LNFEFVPVDMASGEHKKEAYLSLNPFGQVPALE 59 (225)
Q Consensus 4 ~~Ly~~---~~s~~~~~~r~~L~~~g-----i~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~ 59 (225)
+.+|+. ++|+.|+.+.=.+++.. +.+....++.. ..++.....--..+|++.
T Consensus 23 i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~----~~~~l~~~~~V~~~Pt~~ 82 (215)
T TIGR02187 23 IVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTP----EDKEEAEKYGVERVPTTI 82 (215)
T ss_pred EEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCc----ccHHHHHHcCCCccCEEE
Confidence 566777 78999997777665543 23333333322 234555555567899997
No 207
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=35.45 E-value=1.6e+02 Score=22.51 Aligned_cols=60 Identities=15% Similarity=0.119 Sum_probs=43.6
Q ss_pred ceEEeccCCChhhHHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCEEee
Q 038052 3 VIKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQKIF 66 (225)
Q Consensus 3 ~~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~l~ 66 (225)
++++|.+..|..|-.+.=.|+.+|+-=.+..++.+. ++...-.+---.+|.+..||..+.
T Consensus 12 ~VkI~~HktC~ssy~Lf~~L~nkgll~~Vkii~a~~----p~f~~~~~~V~SvP~Vf~DGel~~ 71 (265)
T COG5494 12 EVKIFTHKTCVSSYMLFEYLENKGLLGKVKIIDAEL----PPFLAFEKGVISVPSVFIDGELVY 71 (265)
T ss_pred EEEEEEecchHHHHHHHHHHHhcCCCCCceEEEcCC----ChHHHhhcceeecceEEEcCeEEE
Confidence 478999999999999999999999987777666542 122222344457899887777654
No 208
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=34.52 E-value=1.2e+02 Score=21.81 Aligned_cols=30 Identities=20% Similarity=0.230 Sum_probs=20.5
Q ss_pred cCCChhhH-------HHHHHHHhcCCcceEEeccCCC
Q 038052 9 AAMSTAAQ-------RVFTCLYEKELNFEFVPVDMAS 38 (225)
Q Consensus 9 ~~~s~~~~-------~~r~~L~~~gi~y~~~~v~~~~ 38 (225)
...||.|+ ...-.+...+-+++++.|+-..
T Consensus 42 A~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~ 78 (157)
T KOG2501|consen 42 AHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDR 78 (157)
T ss_pred EEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCC
Confidence 45677666 4556667777788888886543
No 209
>PF12728 HTH_17: Helix-turn-helix domain
Probab=33.86 E-value=85 Score=17.18 Aligned_cols=30 Identities=10% Similarity=0.272 Sum_probs=24.1
Q ss_pred hCCCCCCCeEEeCCEEeeehHHHHHHHHHh
Q 038052 49 LNPFGQVPALEHGGQKIFESRAITQYIAME 78 (225)
Q Consensus 49 ~~P~g~vP~L~~~~~~l~eS~aI~~yL~~~ 78 (225)
..-.|.+|....++...+.-.+|.+|+.+.
T Consensus 21 ~~~~g~i~~~~~g~~~~~~~~~l~~~~~~~ 50 (51)
T PF12728_consen 21 WIRQGKIPPFKIGRKWRIPKSDLDRWLERR 50 (51)
T ss_pred HHHcCCCCeEEeCCEEEEeHHHHHHHHHhC
Confidence 334578888888888999999999998764
No 210
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=33.77 E-value=1.4e+02 Score=19.61 Aligned_cols=57 Identities=12% Similarity=0.044 Sum_probs=32.3
Q ss_pred eEEeccCCChhhHHHHHHH-----HhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEE--eCCEE
Q 038052 4 IKVHGAAMSTAAQRVFTCL-----YEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALE--HGGQK 64 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L-----~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~--~~~~~ 64 (225)
+..++.++|+.|+...-.+ +..+.......++... .+.......-..+|++. .+|..
T Consensus 28 lV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~----~~~l~~~~~V~~~Pt~~i~~~g~~ 91 (111)
T cd02963 28 LIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH----ERRLARKLGAHSVPAIVGIINGQV 91 (111)
T ss_pred EEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc----cHHHHHHcCCccCCEEEEEECCEE
Confidence 5567888999997654333 2222234444455432 23444445567899887 46654
No 211
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=33.58 E-value=83 Score=19.05 Aligned_cols=33 Identities=9% Similarity=0.082 Sum_probs=27.2
Q ss_pred eEEeccCCChhhHHHHHHHHhcCCcceEEeccC
Q 038052 4 IKVHGAAMSTAAQRVFTCLYEKELNFEFVPVDM 36 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~~ 36 (225)
.-+..|+....+++..-+|+..|++++..++..
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~~liP~P~ 35 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPVRLIPTPR 35 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcEEEeCCCh
Confidence 346667778899999999999999999887653
No 212
>PF12290 DUF3802: Protein of unknown function (DUF3802); InterPro: IPR020979 This family of proteins is found in bacteria and are typically between 114 and 143 amino acids in length. There is a conserved KNLFD sequence motif. The annotation with this family suggests that it may be the B subunit of bacterial type IIA DNA topoisomerase but there is no evidence to support this annotation.
Probab=33.13 E-value=1.5e+02 Score=19.91 Aligned_cols=86 Identities=9% Similarity=0.023 Sum_probs=43.7
Q ss_pred hHHHHHHHHHhCCCCCCCCCCCC-ccchHHHHHHHHHhhhcchhHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHH
Q 038052 68 SRAITQYIAMEYPEKGTRLASAD-KPSSSFLIWKEVEAHQFDPVASKLTWEIVLKPMFGMTIDPTMVEEYKAKLAKVLDV 146 (225)
Q Consensus 68 S~aI~~yL~~~~~~~~~~l~p~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 146 (225)
-.+.++||.+..+ ++... .....-....+.+.+.+...+.....+ ....+....-...+....+...
T Consensus 8 Y~~LI~yLte~L~-----lFe~~~~~~~~~~Tv~d~vee~ia~~im~vc~Q-------np~L~~~~R~~iirE~Daiv~D 75 (113)
T PF12290_consen 8 YDALIEYLTENLS-----LFESSQSGDTGDETVEDVVEEQIASQIMAVCEQ-------NPELEFSQRFQIIREADAIVYD 75 (113)
T ss_pred HHHHHHHHHHhHH-----HhcCCCCCCcccchHHHHHHHHHHHHHHHHHcc-------CCCCCHHHHHHHHHHHHHHHHH
Confidence 4678999998864 33311 222222222333333333333333211 1234445555667778888899
Q ss_pred HHHhhcCCCccccCCccHhhhh
Q 038052 147 YEARLTKSKYLASDSFTLVDMH 168 (225)
Q Consensus 147 le~~L~~~~~l~G~~~t~aD~~ 168 (225)
|++.|++- .+.++|..-+.
T Consensus 76 LeEVLa~V---~~~~aT~eQ~~ 94 (113)
T PF12290_consen 76 LEEVLASV---WNQKATNEQIA 94 (113)
T ss_pred HHHHHHHH---HcCCCCHHHHH
Confidence 99988642 12344544443
No 213
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=32.42 E-value=56 Score=23.72 Aligned_cols=33 Identities=9% Similarity=-0.047 Sum_probs=22.6
Q ss_pred eEEeccCCChhhHHH----HHHHHhcCCcceEEeccC
Q 038052 4 IKVHGAAMSTAAQRV----FTCLYEKELNFEFVPVDM 36 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~----r~~L~~~gi~y~~~~v~~ 36 (225)
+++|+...||||... +-+....++.++.+++.+
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~p~~l 37 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARHGATVRYRPILL 37 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHHHHhCCeeEEeeeeH
Confidence 468899999999854 444445567666666544
No 214
>PHA02278 thioredoxin-like protein
Probab=31.42 E-value=1.5e+02 Score=19.36 Aligned_cols=62 Identities=11% Similarity=0.150 Sum_probs=33.4
Q ss_pred eEEeccCCChhhHHHHHHHHhc----CCcceEEeccCCCCCCCchhHhhhCCCCCCCeEE--eCCEEe
Q 038052 4 IKVHGAAMSTAAQRVFTCLYEK----ELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALE--HGGQKI 65 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L~~~----gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~--~~~~~l 65 (225)
+.-++.++|+.|+.+.=.++.. +.......++....+...++.....--..+|++. .+|..+
T Consensus 18 vV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~~v 85 (103)
T PHA02278 18 IVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQLV 85 (103)
T ss_pred EEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECCEEE
Confidence 4456788999998666444332 2222344444432111123444445556789997 477655
No 215
>PRK15371 effector protein YopJ; Provisional
Probab=29.91 E-value=1.8e+02 Score=23.26 Aligned_cols=48 Identities=10% Similarity=0.300 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCccccCCccHhhhhhhhHHHHHHhhhh
Q 038052 133 VEEYKAKLAKVLDVYEARLTKSKYLASDSFTLVDMHHLPTINLLMRTQV 181 (225)
Q Consensus 133 ~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~ 181 (225)
.+...+++..+++.||..+.++.|+ -...+..|+-+.+.+........
T Consensus 21 ~~~~~~~L~~~i~~le~~~~~G~~~-~~~~~~~Di~~lp~lv~~~N~r~ 68 (287)
T PRK15371 21 SEISNEELKNIITQLEDDIADGSWI-HKNYARTDLEVMPALVAQANNKY 68 (287)
T ss_pred chhhHHHHHHHHHHHHHHHHcCCCC-CchhHHhhHHhhHHHHHHHhccC
Confidence 3456788999999999999998888 44589999999998888776533
No 216
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=29.62 E-value=63 Score=23.71 Aligned_cols=33 Identities=18% Similarity=0.358 Sum_probs=21.0
Q ss_pred eEEeccCCChhhH----HHHHHHHhc----CCcceEEeccC
Q 038052 4 IKVHGAAMSTAAQ----RVFTCLYEK----ELNFEFVPVDM 36 (225)
Q Consensus 4 ~~Ly~~~~s~~~~----~~r~~L~~~----gi~y~~~~v~~ 36 (225)
+++|+...||||. +++-+++.. ++.++.+.+.+
T Consensus 1 I~~~~D~~cP~cyl~~~~l~~~~~~~~~~~~~~v~~~p~~L 41 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRLEKALAELGDEVDVEIEWRPFEL 41 (201)
T ss_pred CeEEecCcCccHHHHHHHHHHHHHhCCCCCceEEEEeeeee
Confidence 5789999999998 344444444 45555555443
No 217
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=29.22 E-value=1.2e+02 Score=19.95 Aligned_cols=60 Identities=13% Similarity=0.077 Sum_probs=33.5
Q ss_pred eEEeccCCChhhHHHHHHHHhcCCc---ceEEeccCCCCCCCchhHhhhCCCCCCCeEE--eCCEEeeeh
Q 038052 4 IKVHGAAMSTAAQRVFTCLYEKELN---FEFVPVDMASGEHKKEAYLSLNPFGQVPALE--HGGQKIFES 68 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L~~~gi~---y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~--~~~~~l~eS 68 (225)
+..++.+.|+.|+.+.-.++...-. .....++... . ...+...-..+|++. .+|..+...
T Consensus 28 vv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~----~-~l~~~~~i~~~Pt~~~f~~G~~v~~~ 92 (113)
T cd02957 28 VVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEK----A-FLVNYLDIKVLPTLLVYKNGELIDNI 92 (113)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchh----h-HHHHhcCCCcCCEEEEEECCEEEEEE
Confidence 4467778999898776555432222 2333444431 1 333333446899997 477665543
No 218
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=28.90 E-value=67 Score=19.76 Aligned_cols=22 Identities=9% Similarity=-0.206 Sum_probs=17.1
Q ss_pred eEEeccCCChhhHHHHHHHHhc
Q 038052 4 IKVHGAAMSTAAQRVFTCLYEK 25 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L~~~ 25 (225)
+.+|....||+|....-.+...
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~ 22 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKL 22 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHH
Confidence 4678889999999777777653
No 219
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=28.31 E-value=85 Score=23.20 Aligned_cols=22 Identities=14% Similarity=0.043 Sum_probs=18.4
Q ss_pred ceEEeccCCChhhHHHHHHHHh
Q 038052 3 VIKVHGAAMSTAAQRVFTCLYE 24 (225)
Q Consensus 3 ~~~Ly~~~~s~~~~~~r~~L~~ 24 (225)
.+.+|..+.||+|++..-.+..
T Consensus 80 ~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 80 VVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred EEEEEECCCCccHHHHHHHHhh
Confidence 3678888999999999888874
No 220
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=27.79 E-value=98 Score=22.48 Aligned_cols=34 Identities=6% Similarity=-0.144 Sum_probs=22.3
Q ss_pred ceEEeccCCChhhH----HHHHHHHhc--CCcceEEeccC
Q 038052 3 VIKVHGAAMSTAAQ----RVFTCLYEK--ELNFEFVPVDM 36 (225)
Q Consensus 3 ~~~Ly~~~~s~~~~----~~r~~L~~~--gi~y~~~~v~~ 36 (225)
++.+|..+.||||. +++-+.+.. +++++.+...+
T Consensus 2 ~i~~~~D~~cp~c~~~~~~l~~l~~~~~~~~~v~~~~~~L 41 (193)
T cd03025 2 ELYYFIDPLCGWCYGFEPLLEKLKEEYGGGIEVELHLGGL 41 (193)
T ss_pred eEEEEECCCCchhhCchHHHHHHHHHhCCCceEEEEeccc
Confidence 38899999999998 444444444 56666554433
No 221
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=27.62 E-value=3.6e+02 Score=22.47 Aligned_cols=156 Identities=17% Similarity=0.182 Sum_probs=73.7
Q ss_pred HHHHHHHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCEEeeehHHHHHHHHHhCCCCCCCCCCCCccchH
Q 038052 16 QRVFTCLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQKIFESRAITQYIAMEYPEKGTRLASADKPSSS 95 (225)
Q Consensus 16 ~~~r~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~l~eS~aI~~yL~~~~~~~~~~l~p~~~~~a~ 95 (225)
+++.-+.+..||||+.+.+-...++...++-+...+ |..++..+.--+.+|.+..... . . .
T Consensus 163 ~rL~~fA~~lgv~fef~~v~~~~~e~l~~~~l~~~~---------~E~laVn~~~~Lh~l~~~~~~~------~-~---~ 223 (374)
T PF03514_consen 163 RRLAEFARSLGVPFEFHPVVVESLEDLDPSMLRLRP---------GEALAVNCMFQLHHLLDESGAL------E-N---P 223 (374)
T ss_pred HHHHHHHHHcCccEEEEecccCchhhCCHHHhCccC---------CcEEEEEeehhhhhhccccccc------c-c---h
Confidence 467778888999999999755555544444333332 4455555555555555332210 0 1 2
Q ss_pred HHHHHHHHhhhcchhHHHHHHHHHHhccCCCCCCHHHHH---HHHHHHHHHHHHHHHhhcCCCccccCCccHhhhhhhhH
Q 038052 96 FLIWKEVEAHQFDPVASKLTWEIVLKPMFGMTIDPTMVE---EYKAKLAKVLDVYEARLTKSKYLASDSFTLVDMHHLPT 172 (225)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~ 172 (225)
.+.++..+. .+.+.+..... .. .........+ +.....-..|+.+|..+.... .+...+--.++-.-
T Consensus 224 ~~~~L~~ir-~L~P~vvv~~E-----~e-a~~n~~~F~~RF~eal~yYsalfdsle~~~~~~~---~~r~~~E~~~~~~e 293 (374)
T PF03514_consen 224 RDAFLRVIR-SLNPKVVVLVE-----QE-ADHNSPSFLERFREALHYYSALFDSLEACLPRDS---EERLAVERLFFGRE 293 (374)
T ss_pred HHHHHHHHH-hcCCCEEEEEe-----ec-CCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCC---HHHHHHHHHHhhhH
Confidence 233333222 12221111100 00 0111122222 233333445555555443322 23333333345555
Q ss_pred HHHHHhhhhhhhhccCchHHHHHHHHhc
Q 038052 173 INLLMRTQVKQLFNARPRVSAWVADITA 200 (225)
Q Consensus 173 l~~~~~~~~~~~~~~~p~L~~~~~~~~~ 200 (225)
+..+.......-.+.+..+..|..+|..
T Consensus 294 I~niVa~eg~~R~eR~e~~~~W~~r~~~ 321 (374)
T PF03514_consen 294 IMNIVACEGEERVERHERLEQWRRRMRR 321 (374)
T ss_pred HHHhhhcccccccccccchhHHHHHHHh
Confidence 5555555443445667789999988875
No 222
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=27.60 E-value=1.7e+02 Score=19.81 Aligned_cols=57 Identities=9% Similarity=0.092 Sum_probs=33.6
Q ss_pred EEeccCCChhhHHHHHHHHhcCCcc----eEEeccCCCCCCCchhHhhhCCCCCCCeEE--eCCEEe
Q 038052 5 KVHGAAMSTAAQRVFTCLYEKELNF----EFVPVDMASGEHKKEAYLSLNPFGQVPALE--HGGQKI 65 (225)
Q Consensus 5 ~Ly~~~~s~~~~~~r~~L~~~gi~y----~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~--~~~~~l 65 (225)
.-++.++|+.|+.+.=.++..--.| ....|+... .+++....--..+|++. -+|..+
T Consensus 19 V~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~----~~~la~~~~V~~iPTf~~fk~G~~v 81 (114)
T cd02954 19 IRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDE----VPDFNKMYELYDPPTVMFFFRNKHM 81 (114)
T ss_pred EEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCC----CHHHHHHcCCCCCCEEEEEECCEEE
Confidence 3477889999987765554333222 334455432 35555555556799997 466554
No 223
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=26.76 E-value=95 Score=22.76 Aligned_cols=32 Identities=13% Similarity=-0.154 Sum_probs=29.1
Q ss_pred cceEEeccCCChhhHHHHHHHHhcCCcceEEe
Q 038052 2 GVIKVHGAAMSTAAQRVFTCLYEKELNFEFVP 33 (225)
Q Consensus 2 ~~~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~ 33 (225)
.++.|.++.+++-+--.+.+.+..|.+|-+..
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 36899999999999999999999999998764
No 224
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=26.18 E-value=75 Score=23.58 Aligned_cols=20 Identities=30% Similarity=0.512 Sum_probs=18.6
Q ss_pred CCEEeeehHHHHHHHHHhCC
Q 038052 61 GGQKIFESRAITQYIAMEYP 80 (225)
Q Consensus 61 ~~~~l~eS~aI~~yL~~~~~ 80 (225)
.+.+|+||..|-+|+.++|+
T Consensus 154 ad~lIaDs~~I~~y~~~~y~ 173 (185)
T PF09314_consen 154 ADRLIADSKGIQDYIKERYG 173 (185)
T ss_pred CCEEEEcCHHHHHHHHHHcC
Confidence 55899999999999999998
No 225
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=26.08 E-value=1e+02 Score=24.03 Aligned_cols=21 Identities=5% Similarity=0.089 Sum_probs=16.8
Q ss_pred ceEEeccCCChhhHHHHHHHH
Q 038052 3 VIKVHGAAMSTAAQRVFTCLY 23 (225)
Q Consensus 3 ~~~Ly~~~~s~~~~~~r~~L~ 23 (225)
.+..|..+.||||++..--+.
T Consensus 120 ~I~vFtDp~CpyC~kl~~~l~ 140 (251)
T PRK11657 120 IVYVFADPNCPYCKQFWQQAR 140 (251)
T ss_pred EEEEEECCCChhHHHHHHHHH
Confidence 367788999999999876654
No 226
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=24.52 E-value=86 Score=20.34 Aligned_cols=34 Identities=12% Similarity=0.218 Sum_probs=19.7
Q ss_pred eEEeccCCChhhHHHHHHHHh-------cCCcceEEeccCC
Q 038052 4 IKVHGAAMSTAAQRVFTCLYE-------KELNFEFVPVDMA 37 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L~~-------~gi~y~~~~v~~~ 37 (225)
+.+++.+.||+|++..-.+.. ..-.+....++..
T Consensus 9 v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (112)
T PF13098_consen 9 VVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNID 49 (112)
T ss_dssp EEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESH
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecC
Confidence 567778999999987555542 1113555555554
No 227
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=24.09 E-value=2.3e+02 Score=18.88 Aligned_cols=16 Identities=0% Similarity=0.002 Sum_probs=12.8
Q ss_pred eEEeccCCChhhHHHH
Q 038052 4 IKVHGAAMSTAAQRVF 19 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r 19 (225)
+..++.+.|++|++..
T Consensus 18 lv~f~a~wC~~C~~~~ 33 (125)
T cd02951 18 LLLFSQPGCPYCDKLK 33 (125)
T ss_pred EEEEeCCCCHHHHHHH
Confidence 5667788999999875
No 228
>PF03421 YopJ: YopJ Serine/Threonine acetyltransferase; InterPro: IPR005083 The infection of mammalian host cells by Yersinia sp. causes a rapid induction of the mitogen-activated protein kinase (MAPK; including the ERK, JNK and p38 pathways) and nuclear factor kappaB (NF-kappaB) signalling pathways that would typically result in cytokine production and initiation of the innate immune response. However, these pathways are rapidly inhibited promoting apoptosis. YopJ has been shown to block phosphorylation of active site residues []. It has also been shown that YopJ acetyltransferase is activated by eukaryotic host cell inositol hexakisphosphate []. Serine and threonine acetylation is yet another complication to the control of signalling pathways and may be a may be a widespread mode of biochemical regulation of endogenous processes in eukaryotic cells. It has been shown that YopJ is a serine/threonine acetyltransferase []. It acetylates the serine and threonine residues in the phosphorylation sites of MAPK kinases and nuclear factor kappaB, preventing their activation by phosphorylation and the inhibition of these signalling pathways []. This entry contains YopJ and related proteins.
Probab=24.04 E-value=2.3e+02 Score=20.87 Aligned_cols=60 Identities=15% Similarity=0.284 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhhcCCCccccCCccHhhhhhhhHHHHHHhhhhhhh-hccCchHHHHHHHH
Q 038052 138 AKLAKVLDVYEARLTKSKYLASDSFTLVDMHHLPTINLLMRTQVKQL-FNARPRVSAWVADI 198 (225)
Q Consensus 138 ~~l~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~-~~~~p~L~~~~~~~ 198 (225)
+.+..+.+.+++.+..+.|. ...++..|+-+.+.+........+.+ +.-+..-.+..+.+
T Consensus 2 ~~L~~y~~~~~~~~~~g~~~-~~~~~~~D~~~lp~lv~~~N~r~P~LnL~~~~~~~~~~~~i 62 (177)
T PF03421_consen 2 ESLKEYIERLEDDIKNGSWP-NESYAELDIKMLPALVAAENARYPGLNLHFFDSPEDFVQAI 62 (177)
T ss_pred hHHHHHHHHHHHHHHhCCCC-CcchhhhhHHHHHHHHHHHhhcCCCCceEEcCCcHHHHHHH
Confidence 45778888999999999888 77799999999998888776544332 22233334444444
No 229
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=24.04 E-value=2.4e+02 Score=19.16 Aligned_cols=58 Identities=14% Similarity=0.175 Sum_probs=28.7
Q ss_pred CCChhhHHHHH----HHHhcCCcceEEeccCCC---CCCCchhHhhhCCCC-CCCeEE--eCCEEeee
Q 038052 10 AMSTAAQRVFT----CLYEKELNFEFVPVDMAS---GEHKKEAYLSLNPFG-QVPALE--HGGQKIFE 67 (225)
Q Consensus 10 ~~s~~~~~~r~----~L~~~gi~y~~~~v~~~~---~~~~~~~~~~~~P~g-~vP~L~--~~~~~l~e 67 (225)
++||.|+++.- +.+...-.+....|+... |...+.++...---. .+|++. .++..+.|
T Consensus 38 ~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~~~~~~l~~ 105 (119)
T cd02952 38 SWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRWKTPQRLVE 105 (119)
T ss_pred CCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEEcCCceecc
Confidence 68999986543 333333234455555432 122233443322223 799997 34444443
No 230
>COG3150 Predicted esterase [General function prediction only]
Probab=23.75 E-value=77 Score=23.32 Aligned_cols=32 Identities=13% Similarity=0.134 Sum_probs=26.5
Q ss_pred eEEeccCCChhhHHHHHHHHhcCCcceEEecc
Q 038052 4 IKVHGAAMSTAAQRVFTCLYEKELNFEFVPVD 35 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~v~ 35 (225)
+=|++|+.||.+.+..++++..+-....+.+.
T Consensus 3 lYlHGFnSSP~shka~l~~q~~~~~~~~i~y~ 34 (191)
T COG3150 3 LYLHGFNSSPGSHKAVLLLQFIDEDVRDIEYS 34 (191)
T ss_pred EEEecCCCCcccHHHHHHHHHHhccccceeee
Confidence 45789999999999999999988877666544
No 231
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=23.33 E-value=2.2e+02 Score=20.76 Aligned_cols=63 Identities=13% Similarity=0.049 Sum_probs=34.2
Q ss_pred eEEeccCCChhhHHHHHHHHhcC---CcceEEeccCCCCCCCchhHhhhCCCCCCCeEE--eCCEEeeehHHH
Q 038052 4 IKVHGAAMSTAAQRVFTCLYEKE---LNFEFVPVDMASGEHKKEAYLSLNPFGQVPALE--HGGQKIFESRAI 71 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L~~~g---i~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~--~~~~~l~eS~aI 71 (225)
+..+|.++|+.|+.+--.|+..- -......|+... . ......+-..+|++. -+|..+..-...
T Consensus 87 VV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~----~-~l~~~f~v~~vPTlllyk~G~~v~~~vG~ 154 (175)
T cd02987 87 VVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASA----T-GASDEFDTDALPALLVYKGGELIGNFVRV 154 (175)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccc----h-hhHHhCCCCCCCEEEEEECCEEEEEEech
Confidence 34566788998885543332211 124444555432 1 333445667899997 477766544333
No 232
>PF12123 Amidase02_C: N-acetylmuramoyl-l-alanine amidase; InterPro: IPR021976 This domain is found in bacteria and viruses. This domain is about 50 amino acids in length. This domain is classified with the enzyme classification code 3.5.1.28 from EC. This domain is the C-terminal of the enzyme which hydrolyses the link between N-acetylmuramoyl residues and L-amino acid residues in certain cell-wall glycopeptides. ; PDB: 2L48_B.
Probab=23.11 E-value=54 Score=18.09 Aligned_cols=30 Identities=10% Similarity=0.068 Sum_probs=18.5
Q ss_pred hCCCCCCCeEEeCCEEeeehHHHHHHHHHh
Q 038052 49 LNPFGQVPALEHGGQKIFESRAITQYIAME 78 (225)
Q Consensus 49 ~~P~g~vP~L~~~~~~l~eS~aI~~yL~~~ 78 (225)
.+|...+|.+++++..=.+=.++-.||+++
T Consensus 10 ~~~~~Gl~y~vT~~~s~~~L~k~~~wld~r 39 (45)
T PF12123_consen 10 FQSKDGLPYFVTDPLSDAELDKFTAWLDER 39 (45)
T ss_dssp E-T-TS-EEEEE----HHHHHHHHHHHHHT
T ss_pred EecCCCcEEEEeCCCCHHHHHHHHHHHHhc
Confidence 355567888888887777888888888876
No 233
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.81 E-value=2.6e+02 Score=19.22 Aligned_cols=69 Identities=13% Similarity=0.123 Sum_probs=40.2
Q ss_pred CCChhhHH----HHHHHHhcCCcceEEeccCC---CCCCCchhHhhhCCC--CCCCeEE-eC--CEEeeehHHHHHHHHH
Q 038052 10 AMSTAAQR----VFTCLYEKELNFEFVPVDMA---SGEHKKEAYLSLNPF--GQVPALE-HG--GQKIFESRAITQYIAM 77 (225)
Q Consensus 10 ~~s~~~~~----~r~~L~~~gi~y~~~~v~~~---~~~~~~~~~~~~~P~--g~vP~L~-~~--~~~l~eS~aI~~yL~~ 77 (225)
++||.|.+ ++=+|++..-+...+.+... .|....-.|+ .+|. .-||+|. -+ ...+.+...-..+|.+
T Consensus 43 SWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR-~d~~~lt~vPTLlrw~~~~~rL~~~q~~~~~Lve 121 (128)
T KOG3425|consen 43 SWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFR-KDPGILTAVPTLLRWKRQPQRLDGLQCLNDHLVE 121 (128)
T ss_pred cCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccc-cCCCceeecceeeEEcCccccchHhHhhHHHHHH
Confidence 47888874 56677777777777776543 2332222222 1222 3578887 33 4557777777777776
Q ss_pred hC
Q 038052 78 EY 79 (225)
Q Consensus 78 ~~ 79 (225)
..
T Consensus 122 ~~ 123 (128)
T KOG3425|consen 122 ML 123 (128)
T ss_pred Hh
Confidence 53
No 234
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=22.80 E-value=1.1e+02 Score=16.79 Aligned_cols=22 Identities=14% Similarity=0.318 Sum_probs=16.1
Q ss_pred hHHHHHHHHhcChhHHHHHhhc
Q 038052 190 RVSAWVADITARPAWTKVLAMQ 211 (225)
Q Consensus 190 ~L~~~~~~~~~~p~~~~~~~~~ 211 (225)
.+.++++++.++|.++.-+...
T Consensus 5 ~l~~Fl~~~~~d~~l~~~l~~~ 26 (49)
T PF07862_consen 5 SLKAFLEKVKSDPELREQLKAC 26 (49)
T ss_pred HHHHHHHHHhcCHHHHHHHHhc
Confidence 5777888888888887766653
No 235
>COG5515 Uncharacterized conserved small protein [Function unknown]
Probab=22.78 E-value=73 Score=18.79 Aligned_cols=21 Identities=24% Similarity=0.194 Sum_probs=15.7
Q ss_pred eEEeccC----CChhhHHHHHHHHh
Q 038052 4 IKVHGAA----MSTAAQRVFTCLYE 24 (225)
Q Consensus 4 ~~Ly~~~----~s~~~~~~r~~L~~ 24 (225)
++||.+- -|.||.|+-.+|++
T Consensus 3 mKLYRfiTGpDDssFChrvta~LN~ 27 (70)
T COG5515 3 MKLYRFITGPDDSSFCHRVTAALNK 27 (70)
T ss_pred ceeeEeecCCchHHHHHHHHHHHhC
Confidence 6666653 57799999998864
No 236
>cd00449 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV). This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate lyases (ADCL). BCAT catalyzes the reversible transamination reaction between the L-branched-chain amino and alpha-keto acids. DAAT catalyzes the synthesis of D-glutamic acid and D-alanine, and ADCL converts 4-amino-4-deoxychorismate to p-aminobenzoate and pyruvate. Except for a few enzymes, i. e., Escherichia coli and Salmonella BCATs, which are homohexamers arranged as a double trimer, the class IV PLPDEs are homodimers. Homodimer formation is required for catalytic activity.
Probab=22.36 E-value=67 Score=24.79 Aligned_cols=58 Identities=17% Similarity=0.154 Sum_probs=37.6
Q ss_pred HHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCEEe--eehHHHHHHHHHh
Q 038052 21 CLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQKI--FESRAITQYIAME 78 (225)
Q Consensus 21 ~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~l--~eS~aI~~yL~~~ 78 (225)
.++..|++++...+.+.+-..-.+-|..-+-.|-+|+-..++..+ .....|.+.|.+.
T Consensus 196 ~~~~~g~~v~e~~i~~~dL~~adevfl~ns~~gv~pV~~i~~~~~~~~~~~~~~~~l~~~ 255 (256)
T cd00449 196 LAKELGIKVEERPISLDELYAADEVFLTGTAAEVTPVTEIDGRGIGDGKPGPVTRKLREL 255 (256)
T ss_pred HHHHcCCeEEEEecCHHHHhhCCEEEEccccceEEEEEEECCeecCCCCCCHHHHHHHHh
Confidence 567789999998887643222223344445668899998887776 3445666666543
No 237
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=22.08 E-value=2e+02 Score=18.33 Aligned_cols=54 Identities=11% Similarity=0.049 Sum_probs=29.2
Q ss_pred eEEeccCCChhhHHHHHHHHhc----CCcceEEeccCCCCCCCchhHhhhCCCCCCCeEE
Q 038052 4 IKVHGAAMSTAAQRVFTCLYEK----ELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALE 59 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L~~~----gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~ 59 (225)
+..++.++|+.|+...-.++.. +-......++... ...+++.....-..+|++.
T Consensus 22 lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~--~~~~~~~~~~~i~~~Pt~~ 79 (109)
T cd03002 22 LVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDE--DKNKPLCGKYGVQGFPTLK 79 (109)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCc--cccHHHHHHcCCCcCCEEE
Confidence 5677888999998664433332 2123333344332 1123444444456789887
No 238
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=21.77 E-value=1.7e+02 Score=19.35 Aligned_cols=29 Identities=14% Similarity=0.093 Sum_probs=22.2
Q ss_pred EEeccCCChhhHHHHHHHHhcCCcceEEe
Q 038052 5 KVHGAAMSTAAQRVFTCLYEKELNFEFVP 33 (225)
Q Consensus 5 ~Ly~~~~s~~~~~~r~~L~~~gi~y~~~~ 33 (225)
.|......|...-++.+.+++|||.+...
T Consensus 59 vLVr~~~~pd~~Hl~~LA~ekgVpVe~~~ 87 (100)
T PF15608_consen 59 VLVRDPDDPDLAHLLLLAEEKGVPVEVYP 87 (100)
T ss_pred EEECCCCCccHHHHHHHHHHcCCcEEEeC
Confidence 45555667888888889999999888763
No 239
>PRK06092 4-amino-4-deoxychorismate lyase; Reviewed
Probab=21.69 E-value=95 Score=24.26 Aligned_cols=58 Identities=14% Similarity=0.102 Sum_probs=37.7
Q ss_pred HHHhcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEEeCCEEeeehHHHHHHHHHhC
Q 038052 21 CLYEKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALEHGGQKIFESRAITQYIAMEY 79 (225)
Q Consensus 21 ~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~l~eS~aI~~yL~~~~ 79 (225)
.++..|++++...+.+.+-..-.+-|..-+-.|-+||-..|+..+. +..+.+.|.+.+
T Consensus 208 ~~~~~g~~v~e~~i~~~dL~~adevfltns~~gi~pV~~id~~~~~-~g~~~~~l~~~~ 265 (268)
T PRK06092 208 LLAQSGYPVVEVDASLEELLQADEVFICNSLMPVWPVRAIGETSYS-SGTLTRYLQPLC 265 (268)
T ss_pred HHHHcCCeEEEEECCHHHHhhCCEEEEeCCcceEEEEEEECCEEcc-chHHHHHHHHHH
Confidence 4677899999998876432222233444466688999998887663 356666665543
No 240
>PF13728 TraF: F plasmid transfer operon protein
Probab=21.23 E-value=1.5e+02 Score=22.53 Aligned_cols=32 Identities=9% Similarity=-0.088 Sum_probs=25.5
Q ss_pred eEEeccCCChhhH----HHHHHHHhcCCcceEEecc
Q 038052 4 IKVHGAAMSTAAQ----RVFTCLYEKELNFEFVPVD 35 (225)
Q Consensus 4 ~~Ly~~~~s~~~~----~~r~~L~~~gi~y~~~~v~ 35 (225)
+.+++-+.|++|+ .++.+....|++...+.+|
T Consensus 124 L~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~D 159 (215)
T PF13728_consen 124 LFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLD 159 (215)
T ss_pred EEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecC
Confidence 5677778899997 6778888888887777766
No 241
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=21.15 E-value=1.7e+02 Score=19.33 Aligned_cols=21 Identities=5% Similarity=-0.108 Sum_probs=14.3
Q ss_pred eEEeccCCChhhHHHHHHHHh
Q 038052 4 IKVHGAAMSTAAQRVFTCLYE 24 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L~~ 24 (225)
+..||.++|+.|+...-.++.
T Consensus 23 vV~f~a~wC~~C~~~~~~~~~ 43 (114)
T cd02992 23 LVEFYASWCGHCRAFAPTWKK 43 (114)
T ss_pred EEEEECCCCHHHHHHhHHHHH
Confidence 456778889999866554433
No 242
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=20.85 E-value=3.9e+02 Score=20.47 Aligned_cols=73 Identities=7% Similarity=0.056 Sum_probs=41.7
Q ss_pred eEEeccCCChhhHHHHHHHHhc----CCcceEEeccCCCCCCCchhHhhhCCCCCCCeEE--eCCEEee------ehHHH
Q 038052 4 IKVHGAAMSTAAQRVFTCLYEK----ELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALE--HGGQKIF------ESRAI 71 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L~~~----gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~--~~~~~l~------eS~aI 71 (225)
+..+|.++|+.|++..=.++.. +-......++... .++..+...-..+|++. .+|..+. ....|
T Consensus 56 lV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~----~~~l~~~~~I~~~PTl~~f~~G~~v~~~~G~~s~e~L 131 (224)
T PTZ00443 56 FVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATR----ALNLAKRFAIKGYPTLLLFDKGKMYQYEGGDRSTEKL 131 (224)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcc----cHHHHHHcCCCcCCEEEEEECCEEEEeeCCCCCHHHH
Confidence 4567888999998665444332 1123333344322 24444444556889887 4665542 34567
Q ss_pred HHHHHHhCC
Q 038052 72 TQYIAMEYP 80 (225)
Q Consensus 72 ~~yL~~~~~ 80 (225)
.+|+.+.+.
T Consensus 132 ~~fi~~~~~ 140 (224)
T PTZ00443 132 AAFALGDFK 140 (224)
T ss_pred HHHHHHHHH
Confidence 777777664
No 243
>PRK09381 trxA thioredoxin; Provisional
Probab=20.60 E-value=2.5e+02 Score=18.04 Aligned_cols=58 Identities=10% Similarity=0.086 Sum_probs=33.1
Q ss_pred eEEeccCCChhhHHHHHHHH----hcCCcceEEeccCCCCCCCchhHhhhCCCCCCCeEE--eCCEEe
Q 038052 4 IKVHGAAMSTAAQRVFTCLY----EKELNFEFVPVDMASGEHKKEAYLSLNPFGQVPALE--HGGQKI 65 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L~----~~gi~y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~--~~~~~l 65 (225)
+..++.+.||.|+...-.++ ..+-.+....++.... +.....-.-..+|++. .+|..+
T Consensus 25 vv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~----~~~~~~~~v~~~Pt~~~~~~G~~~ 88 (109)
T PRK09381 25 LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN----PGTAPKYGIRGIPTLLLFKNGEVA 88 (109)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCC----hhHHHhCCCCcCCEEEEEeCCeEE
Confidence 45677788999987754443 2222345555555422 3333334456799887 466554
No 244
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=20.43 E-value=1.4e+02 Score=18.99 Aligned_cols=52 Identities=8% Similarity=0.008 Sum_probs=29.6
Q ss_pred eEEeccCCChhhHHHHHHHHhcCCc----ceEEeccCCCCCCCchhHhhhCCCCCCCeEE
Q 038052 4 IKVHGAAMSTAAQRVFTCLYEKELN----FEFVPVDMASGEHKKEAYLSLNPFGQVPALE 59 (225)
Q Consensus 4 ~~Ly~~~~s~~~~~~r~~L~~~gi~----y~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~ 59 (225)
+..++.++|+.|+...-.++...-. +....++... .+...+...-..+|++.
T Consensus 22 ~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~----~~~~~~~~~v~~~Pt~~ 77 (101)
T cd03003 22 FVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGD----DRMLCRSQGVNSYPSLY 77 (101)
T ss_pred EEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCc----cHHHHHHcCCCccCEEE
Confidence 4567788899998765554333222 3344455432 23443344456889886
Done!