BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038053
(231 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LXX|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 4
Length = 239
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 62/92 (67%), Gaps = 1/92 (1%)
Query: 21 NGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDT 80
N + +VL+G+TG GKSATGNSILGRK F + + +TK CE +++ K+ ++V V+DT
Sbjct: 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELV-VVDT 85
Query: 81 PGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVL 112
PG+FD+ + KEI++ I L G HA+L
Sbjct: 86 PGIFDTEVPNAETSKEIIRCILLTSPGPHALL 117
>pdb|2XTM|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 1-234
pdb|2XTM|B Chain B, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 1-234
pdb|2XTN|A Chain A, Crystal Structure Of Gtp-Bound Human Gimap2, Amino Acid
Residues 1-234
Length = 234
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 5/119 (4%)
Query: 14 WKPTS----SSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVL 69
W P + +S + ++L+G+TG GKSA GNSIL ++AF++ S +TKTC
Sbjct: 9 WGPHAKGQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW 68
Query: 70 KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLXXXXXXXXXXQEEEAA 128
+ ++V +IDTP +F E + KE+ + L+ G H +L Q+++AA
Sbjct: 69 GNREIV-IIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAA 126
>pdb|2XTO|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 21-260
pdb|2XTO|B Chain B, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 21-260
Length = 240
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 58/103 (56%), Gaps = 1/103 (0%)
Query: 26 VVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 85
++L+G+TG GKSA GNSIL ++AF++ S +TKTC + ++V +IDTP +F
Sbjct: 5 IILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IIDTPDMFS 63
Query: 86 SSAGSEFVGKEIVKRIGLAKGGIHAVLXXXXXXXXXXQEEEAA 128
E + KE+ + L+ G H +L Q+++AA
Sbjct: 64 WKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAA 106
>pdb|2XTP|A Chain A, Crystal Structure Of Nucleotide-Free Human Gimap2, Amino
Acid Residues 1-260
Length = 260
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 63/119 (52%), Gaps = 5/119 (4%)
Query: 14 WKPTS----SSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVL 69
W P + +S + ++L+G+TG GKSA GNSIL ++AF++ S +TKTC
Sbjct: 9 WGPHAKGQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW 68
Query: 70 KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLXXXXXXXXXXQEEEAA 128
+ ++V +IDTP F E + KE+ + L+ G H +L Q+++AA
Sbjct: 69 GNREIV-IIDTPDXFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAA 126
>pdb|3P1J|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|B Chain B, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|C Chain C, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|D Chain D, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
Length = 209
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 58/103 (56%), Gaps = 1/103 (0%)
Query: 26 VVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 85
++L+G+TG GKSA GNSIL ++AF++ S +TKTC + ++V +IDTP +F
Sbjct: 8 IILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IIDTPDMFS 66
Query: 86 SSAGSEFVGKEIVKRIGLAKGGIHAVLXXXXXXXXXXQEEEAA 128
E + KE+ + L+ G H +L Q+++AA
Sbjct: 67 WKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAA 109
>pdb|3V70|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 1
pdb|3V70|B Chain B, Crystal Structure Of Human Gtpase Imap Family Member 1
Length = 247
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 57/109 (52%), Gaps = 10/109 (9%)
Query: 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 83
R ++L+GRTG GKSATGNSILG++ F + ++ VT+ C + D V V+DTP +
Sbjct: 22 RRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRW-DKCHVEVVDTPDI 80
Query: 84 FDS-----SAGSEFVGKEIVKRIGLAKGGIHAVLXXXXXXXXXXQEEEA 127
F S G E G + L+ G HA+L Q+++A
Sbjct: 81 FSSQVSKTDPGCEERGHCYL----LSAPGPHALLLVTQLGRFTAQDQQA 125
>pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Mg2+ And Gmppnp
Length = 262
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 84
TV++LG+ G GKS+T NS++G + + S + + + T+ G +N+IDTPGL
Sbjct: 38 TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLV 95
Query: 85 DS 86
++
Sbjct: 96 EA 97
>pdb|3DEF|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana,
Dimerization Deficient Mutant R130a
Length = 262
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 84
TV++LG+ G GKS+T NS++G + + S + + + T+ G +N+IDTPGL
Sbjct: 38 TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLV 95
Query: 85 DS 86
++
Sbjct: 96 EA 97
>pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Gdp And Mg2+
Length = 262
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 84
TV++LG+ G GKS+T NS++G + + S + + + T+ G +N+IDTPGL
Sbjct: 38 TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLV 95
Query: 85 DS 86
++
Sbjct: 96 EA 97
>pdb|2J3E|A Chain A, Dimerization Is Important For The Gtpase Activity Of
Chloroplast Translocon Components Attoc33 And Pstoc159
Length = 249
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 84
TV++LG+ G GKS+T NS++G + + S + + + T+ G +N+IDTPGL
Sbjct: 37 TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLV 94
Query: 85 DS 86
++
Sbjct: 95 EA 96
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 26 VVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 85
VV+ GR GKS+ N++ GR+A + D +G T+ ++ + DG +++IDT GL +
Sbjct: 10 VVIAGRPNAGKSSLLNALAGREAAIVT-DIAGTTRDV-LREHIHIDGMPLHIIDTAGLRE 67
Query: 86 SSAGSEFVGKE 96
+S E +G E
Sbjct: 68 ASDEVERIGIE 78
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 26 VVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 85
VV+ GR GKS+ N++ GR+A + D +G T+ ++ + DG +++IDT GL +
Sbjct: 7 VVIAGRPNAGKSSLLNALAGREAAIVT-DIAGTTRDV-LREHIHIDGMPLHIIDTAGLRE 64
Query: 86 SSAGSEFVGKE 96
+S E +G E
Sbjct: 65 ASDEVERIGIE 75
>pdb|3BB1|A Chain A, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|B Chain B, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|C Chain C, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|D Chain D, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|E Chain E, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|F Chain F, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|G Chain G, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|H Chain H, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
Length = 274
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 84
T++++G+ G GKS+T NSI+G + S S + + + + G +N+IDTPGL
Sbjct: 41 TILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRS--RAGFTLNIIDTPGLI 98
Query: 85 D 85
+
Sbjct: 99 E 99
>pdb|2GJ8|A Chain A, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
pdb|2GJ8|B Chain B, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
pdb|2GJ8|C Chain C, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
pdb|2GJ8|D Chain D, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
Length = 172
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 20 SNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVID 79
S+G + VV+ GR GKS+ N++ GR+A + D +G T+ ++ + DG +++ID
Sbjct: 2 SHGXK-VVIAGRPNAGKSSLLNALAGREAAIVT-DIAGTTRDV-LREHIHIDGXPLHIID 58
Query: 80 TPGLFDSSAGSEFVGKE 96
T GL ++S E +G E
Sbjct: 59 TAGLREASDEVERIGIE 75
>pdb|1H65|A Chain A, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|B Chain B, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|C Chain C, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
Length = 270
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 84
T+++ G+ G GKS+T NSI+G + S S + + + + G +N+IDTPGL
Sbjct: 41 TILVXGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVXVSRS--RAGFTLNIIDTPGLI 98
Query: 85 D 85
+
Sbjct: 99 E 99
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|M Chain M, 3-D Structure Of Myosin-V Inhibited State
Length = 1080
Score = 35.8 bits (81), Expect = 0.018, Method: Composition-based stats.
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 24/105 (22%)
Query: 124 EEEAANGGQPYTDEFLA---ELKRGATELRDQQAEVDSLKEYS---KQEISKLMGQMQES 177
EEEA N T+ L+ E+ + EL Q E +++E++ K E +L+ +++E
Sbjct: 976 EEEAKNA----TNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQ 1031
Query: 178 --------------YEDQIKRITEMVESELKETTTRLEQQLAEEQ 208
DQ K ITE +E +L E T +LE L +E+
Sbjct: 1032 NTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDER 1076
>pdb|3QQ5|A Chain A, Crystal Structure Of The [fefe]-Hydrogenase Maturation
Protein Hydf
Length = 423
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPG 82
+R +V+ GR GKS+ N+++G+ S D +G T K+ L V ++DTPG
Sbjct: 34 RRYIVVAGRRNVGKSSFMNALVGQNVSIVS-DYAGTTTDPVYKSMELHPIGPVTLVDTPG 92
Query: 83 LFD 85
L D
Sbjct: 93 LDD 95
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 25 TVVLLGRTGNGKSATGNSILGRKAFKASA-DSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 83
TV+++GR GKS N ++ +K KA D GVT+ ++ TV G+ ++DT G+
Sbjct: 3 TVLIVGRPNVGKSTLFNKLVKKK--KAIVEDEEGVTRD-PVQDTVEWYGKTFKLVDTCGV 59
Query: 84 FDSS 87
FD+
Sbjct: 60 FDNP 63
>pdb|1SUL|A Chain A, Crystal Structure Of The Apo-Ysxc
pdb|1SUL|B Chain B, Crystal Structure Of The Apo-Ysxc
pdb|1SVI|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ysxc
Complexed With Gdp
pdb|1SVW|A Chain A, Crystal Structure Of Ysxc Complexed With Gmppnp
pdb|1SVW|B Chain B, Crystal Structure Of Ysxc Complexed With Gmppnp
Length = 195
Score = 31.2 bits (69), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 26 VVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPG 82
+ L GR+ GKS+ NS++ RK ++ G T+T ++ D ++ +D PG
Sbjct: 26 IALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNF--YIINDE--LHFVDVPG 78
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 30.4 bits (67), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 16 PTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTK 60
P S GK V ++GR GKS N I G + D+ GVT+
Sbjct: 16 PRGSHMGKPVVAIVGRPNVGKSTIFNRIAGER-ISIVEDTPGVTR 59
>pdb|2RCN|A Chain A, Crystal Structure Of The Ribosomal Interacting Gtpase Yjeq
From The Enterobacterial Species Salmonella Typhimurium
Length = 358
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 15 KPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQV 74
KP + R + G++G GKS+ N++LG + + D S V+ + TT +
Sbjct: 207 KPLEEALTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHF 266
Query: 75 VN---VIDTPGL 83
+ VID+PG+
Sbjct: 267 PHGGDVIDSPGV 278
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 26 VVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGL 83
V ++G+ GKS N++LG K S K +L +G Q+V +DTPGL
Sbjct: 10 VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLR---GILTEGRRQIV-FVDTPGL 65
Query: 84 FDS-SAGSEFVGKEI 97
A EF+ +E+
Sbjct: 66 HKPMDALGEFMDQEV 80
>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
Length = 282
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 27 VLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDS 86
+++G GKS N L +K + D G+T + + +K G+ + ++DTPG+
Sbjct: 124 LIIGIPNVGKSTLINR-LAKKNIAKTGDRPGITTSQQW----VKVGKELELLDTPGILWP 178
Query: 87 SAGSEFVG 94
E VG
Sbjct: 179 KFEDELVG 186
>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of
Enga From Thermus Thermophilus Hb8
pdb|2DYK|B Chain B, Crystal Structure Of N-Terminal Gtp-Binding Domain Of
Enga From Thermus Thermophilus Hb8
Length = 161
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 26 VVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 84
VV++GR GKS+ N +L +++ AD GVT+ + G+ + ++DT GL+
Sbjct: 4 VVIVGRPNVGKSSLFNRLLKKRS-AVVADVPGVTRDLKEGVVETDRGRFL-LVDTGGLW 60
>pdb|1NMR|A Chain A, Solution Structure Of C-Terminal Domain From Trypanosoma
Cruzi Poly(A)-Binding Protein
Length = 85
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 8/18 (44%), Positives = 16/18 (88%)
Query: 69 LKDGQVVNVIDTPGLFDS 86
+ +G+++N++DTPGL D+
Sbjct: 53 MDNGEILNLLDTPGLLDA 70
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 26 VVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 85
V ++G+ GKS N++LG K S +G T+ + + + + +DTPG+++
Sbjct: 12 VAIVGKPNVGKSTLLNNLLGTKVSIISP-KAGTTRMRVLGVKNIPNEAQIIFLDTPGIYE 70
Query: 86 SSAGSEFVGKEIV 98
S+ +G +V
Sbjct: 71 PKK-SDVLGHSMV 82
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The
3' End Of 16s Rrna
Length = 308
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 26 VVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 85
V ++G+ GKS N++LG K S +G T+ + + + + +DTPG+++
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTKVSIISP-KAGTTRMRVLGVKNIPNEAQIIFLDTPGIYE 71
Query: 86 SSAGSEFVGKEIV 98
S+ +G +V
Sbjct: 72 PKK-SDVLGHSMV 83
>pdb|4ARZ|A Chain A, The Crystal Structure Of Gtr1p-Gtr2p Complexed With
Gtp-Gdp
Length = 310
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 21/30 (70%)
Query: 19 SSNGKRTVVLLGRTGNGKSATGNSILGRKA 48
SSN ++ ++L+GR+G+GKS+ + I +
Sbjct: 2 SSNNRKKLLLMGRSGSGKSSMRSIIFSNYS 31
>pdb|3H2Y|A Chain A, Crystal Structure Of Yqeh Gtpase From Bacillus Anthracis
With Dgdp Bound
Length = 368
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 9/89 (10%)
Query: 22 GKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVV-----N 76
G + V ++G T GKS + + R + S ++ V T T L + +
Sbjct: 159 GGKDVYVVGCTNVGKS----TFINRXIKEFSDETENVITTSHFPGTTLDLIDIPLDEESS 214
Query: 77 VIDTPGLFDSSAGSEFVGKEIVKRIGLAK 105
+ DTPG+ + + +VGK+ +K I K
Sbjct: 215 LYDTPGIINHHQXAHYVGKQSLKLITPTK 243
>pdb|3NEY|A Chain A, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|B Chain B, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|C Chain C, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|D Chain D, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|F Chain F, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|E Chain E, Crystal Structure Of The Kinase Domain Of Mpp1P55
Length = 197
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 22 GKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTP 81
G++T+VL+G +G G+S N++L + K T+ +DG+ + I T
Sbjct: 18 GRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE---EDGKEYHFISTE 74
Query: 82 GLFDSSAGSEFV 93
+ + + +EF+
Sbjct: 75 EMTRNISANEFL 86
>pdb|1D2M|A Chain A, Uvrb Protein Of Thermus Thermophilus Hb8; A Nucleotide
Excision Repair Enzyme
Length = 665
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 21 NGKRTVVLLGRTGNGKSATGNSI---LGRKAF 49
+G+R V LLG TG GK+ T + LGR A
Sbjct: 27 DGERFVTLLGATGTGKTVTMAKVIEALGRPAL 58
>pdb|1C4O|A Chain A, Crystal Structure Of The Dna Nucleotide Excision Repair
Enzyme Uvrb From Thermus Thermophilus
Length = 664
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 21 NGKRTVVLLGRTGNGKSATGNSI---LGRKAF 49
+G+R V LLG TG GK+ T + LGR A
Sbjct: 26 DGERFVTLLGATGTGKTVTMAKVIEALGRPAL 57
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 18 SSSNGKRTVVLLGRTGNGKSATGNSI 43
+++N KR V+L+G G GKS G ++
Sbjct: 55 TAANQKRHVLLIGEPGTGKSMLGQAM 80
>pdb|1O6Z|A Chain A, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
pdb|1O6Z|B Chain B, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
pdb|1O6Z|C Chain C, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
pdb|1O6Z|D Chain D, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
Length = 303
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 17/68 (25%)
Query: 160 KEYSKQEISKLMGQMQESYEDQIKR-----------ITEMVESELKET------TTRLEQ 202
E+S E +L+G +QES D I+R + MVE+ L +T + +LE
Sbjct: 193 PEFSGDEKEQLLGDLQESAMDVIERKGATEWGPARGVAHMVEAILHDTGEVLPASVKLEG 252
Query: 203 QLAEEQAA 210
+ E A
Sbjct: 253 EFGHEDTA 260
>pdb|2HLP|A Chain A, Crystal Structure Of The E267r Mutant Of A Halophilic
Malate Dehydrogenase In The Apo Form
pdb|2HLP|B Chain B, Crystal Structure Of The E267r Mutant Of A Halophilic
Malate Dehydrogenase In The Apo Form
Length = 303
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 17/68 (25%)
Query: 160 KEYSKQEISKLMGQMQESYEDQIKR-----------ITEMVESELKET------TTRLEQ 202
E+S E +L+G +QES D I+R + MVE+ L +T + +LE
Sbjct: 193 PEFSGDEKEQLLGDLQESAMDVIERKGATEWGPARGVAHMVEAILHDTGRVLPASVKLEG 252
Query: 203 QLAEEQAA 210
+ E A
Sbjct: 253 EFGHEDTA 260
>pdb|2X0R|A Chain A, R207s,R292s Mutant Of Malate Dehydrogenase From The
Halophilic Archaeon Haloarcula Marismortui (Holo Form)
pdb|2X0R|B Chain B, R207s,R292s Mutant Of Malate Dehydrogenase From The
Halophilic Archaeon Haloarcula Marismortui (Holo Form)
Length = 304
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 17/68 (25%)
Query: 160 KEYSKQEISKLMGQMQESYEDQIKR-----------ITEMVESELKET------TTRLEQ 202
E+S E +L+G +QES D I+R + MVE+ L +T + +LE
Sbjct: 194 PEFSGDEKEQLLGDLQESAMDVIERKGATEWGPARGVAHMVEAILHDTGEVLPASVKLEG 253
Query: 203 QLAEEQAA 210
+ E A
Sbjct: 254 EFGHEDTA 261
>pdb|2J5K|A Chain A, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5K|B Chain B, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5K|C Chain C, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5K|D Chain D, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5Q|A Chain A, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5Q|B Chain B, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5Q|C Chain C, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5Q|D Chain D, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5R|A Chain A, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
pdb|2J5R|B Chain B, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
pdb|2J5R|C Chain C, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
pdb|2J5R|D Chain D, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
Length = 304
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 17/68 (25%)
Query: 160 KEYSKQEISKLMGQMQESYEDQIKR-----------ITEMVESELKET------TTRLEQ 202
E+S E +L+G +QES D I+R + MVE+ L +T + +LE
Sbjct: 194 PEFSGDEKEQLLGDLQESAMDVIERKGATEWGPARGVAHMVEAILHDTGEVLPASVKLEG 253
Query: 203 QLAEEQAA 210
+ E A
Sbjct: 254 EFGHEDTA 261
>pdb|1HLP|A Chain A, Structural Features Stabilizing Halophilic Malate
Dehydrogenase From An Archaebacterium
pdb|1HLP|B Chain B, Structural Features Stabilizing Halophilic Malate
Dehydrogenase From An Archaebacterium
pdb|1D3A|A Chain A, Crystal Structure Of The Wild Type Halophilic Malate
Dehydrogenase In The Apo Form
pdb|1D3A|B Chain B, Crystal Structure Of The Wild Type Halophilic Malate
Dehydrogenase In The Apo Form
Length = 303
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 17/68 (25%)
Query: 160 KEYSKQEISKLMGQMQESYEDQIKR-----------ITEMVESELKET------TTRLEQ 202
E+S E +L+G +QES D I+R + MVE+ L +T + +LE
Sbjct: 193 PEFSGDEKEQLLGDLQESAMDVIERKGATEWGPARGVAHMVEAILHDTGEVLPASVKLEG 252
Query: 203 QLAEEQAA 210
+ E A
Sbjct: 253 EFGHEDTA 260
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPG 82
V ++G +GK+ + + RK A+ ++ G+T+ L G+ + +DTPG
Sbjct: 6 VVTIMGHVDHGKTTLLDKL--RKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPG 61
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 22 GKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTK 60
GK V ++GR GKS N I G + D+ GVT+
Sbjct: 2 GKPVVAIVGRPNVGKSTIFNRIAGER-ISIVEDTPGVTR 39
>pdb|1VHV|A Chain A, Crystal Structure Of Diphthine Synthase
pdb|1VHV|B Chain B, Crystal Structure Of Diphthine Synthase
Length = 268
Score = 26.9 bits (58), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 162 YSKQEISKLMGQMQESYEDQIKRITEMVESELKETTTRL 200
Y + SKL+ ++E E KR+ E+ S+L+E + RL
Sbjct: 43 YVEYYTSKLLSSIEEXEEFFGKRVVELERSDLEENSFRL 81
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.308 0.125 0.329
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,809,247
Number of Sequences: 62578
Number of extensions: 213775
Number of successful extensions: 867
Number of sequences better than 100.0: 90
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 813
Number of HSP's gapped (non-prelim): 102
length of query: 231
length of database: 14,973,337
effective HSP length: 96
effective length of query: 135
effective length of database: 8,965,849
effective search space: 1210389615
effective search space used: 1210389615
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 50 (23.9 bits)