BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038053
(231 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P54120|AIG1_ARATH Protein AIG1 OS=Arabidopsis thaliana GN=AIG1 PE=2 SV=1
Length = 353
Score = 137 bits (345), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 65/109 (59%), Positives = 79/109 (72%)
Query: 18 SSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNV 77
S + +VL+GRTGNGKSATGNSI+ K FK+ SSGVT C V +G ++NV
Sbjct: 37 SQPHPVENIVLVGRTGNGKSATGNSIVRSKVFKSKTKSSGVTMECHAVKAVTPEGPILNV 96
Query: 78 IDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEE 126
IDTPGLFD S +EF+GKEIVK + LA GG+HAVL+V SVR+R SQEEE
Sbjct: 97 IDTPGLFDLSVSAEFIGKEIVKCLTLADGGLHAVLLVLSVRTRISQEEE 145
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 129 NGGQPYTDEFLAELKRGATELRDQQAEVDSLKEYSKQEISKLMGQMQESYEDQIKRITEM 188
N PYTDE +K + +Q E++S K +S+++++ LM ++Q E +K + EM
Sbjct: 234 NNNIPYTDEMYHMIKEENERHKKEQEELES-KGHSEEQLAALMKELQIMNERNLKAMAEM 292
Query: 189 VESELK 194
+E +K
Sbjct: 293 MEKNMK 298
>sp|O81025|P2A03_ARATH Putative protein PHLOEM PROTEIN 2-LIKE A3 OS=Arabidopsis thaliana
GN=PP2A3 PE=4 SV=1
Length = 463
Score = 117 bits (294), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 74/104 (71%)
Query: 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 83
+ +VL+GRTGNGKS+TGN++LG K FK+ + GVT CEM ++DG ++NVIDTPGL
Sbjct: 6 KNIVLVGRTGNGKSSTGNTLLGTKQFKSKNQAKGVTMICEMYRAAIQDGPIINVIDTPGL 65
Query: 84 FDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA 127
DS + + EI+ + +A+ GIHAVL+V S R R S+EEE+
Sbjct: 66 CDSFVPGDDISNEIINCLTMAEEGIHAVLLVLSARGRISKEEES 109
>sp|Q9NUV9|GIMA4_HUMAN GTPase IMAP family member 4 OS=Homo sapiens GN=GIMAP4 PE=1 SV=1
Length = 329
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 72/108 (66%), Gaps = 2/108 (1%)
Query: 21 NGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDT 80
N + +VL+G+TG GKSATGNSILGRK F + + +TK CE +++ K+ ++V V+DT
Sbjct: 28 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELV-VVDT 86
Query: 81 PGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEAA 128
PG+FD+ + KEI++ I L G HA+L+V + R+++EE A
Sbjct: 87 PGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPL-GRYTEEEHKA 133
>sp|Q8K3K9|GIMA4_RAT GTPase IMAP family member 4 OS=Rattus norvegicus GN=Gimap4 PE=2
SV=1
Length = 310
Score = 87.8 bits (216), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 45/102 (44%), Positives = 64/102 (62%), Gaps = 1/102 (0%)
Query: 26 VVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 85
+VLLG+TG GKS+TGNSILGRKAF + + +TK CE K + DG+ + V+DTPG+FD
Sbjct: 33 IVLLGKTGAGKSSTGNSILGRKAFLSGICAKSITKVCE-KGVSIWDGKELVVVDTPGIFD 91
Query: 86 SSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA 127
+ KEI + + L G HA+L+V + +E +A
Sbjct: 92 TEVPDADTQKEITRCVALTSPGPHALLLVIPLGCYTVEEHKA 133
>sp|Q99JY3|GIMA4_MOUSE GTPase IMAP family member 4 OS=Mus musculus GN=Gimap4 PE=1 SV=1
Length = 219
Score = 87.4 bits (215), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 84/158 (53%), Gaps = 9/158 (5%)
Query: 26 VVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 85
+VLLG+TG GKS+TGNSILG K F + + +TK CE + + DG+ + V+DTPG+FD
Sbjct: 33 IVLLGKTGAGKSSTGNSILGEKVFNSGICAKSITKVCEKRVSTW-DGKELVVVDTPGIFD 91
Query: 86 SSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEAANGGQPYTDEFLAELKRG 145
+ +EI + + L G HA+L+V + R++ EE A Q D F + +R
Sbjct: 92 TEVPDADTQREITRYVALTSPGPHALLLVVPL-GRYTVEEHKAT--QKILDMFGKQARRF 148
Query: 146 ATEL--RDQQAEVDSLKEY---SKQEISKLMGQMQESY 178
L R E + EY + + ++M + Q Y
Sbjct: 149 MILLLTRKDDLEDTDIHEYLEKAPKFFQEVMHEFQNRY 186
>sp|Q8ND71|GIMA8_HUMAN GTPase IMAP family member 8 OS=Homo sapiens GN=GIMAP8 PE=1 SV=2
Length = 665
Score = 77.8 bits (190), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 4/176 (2%)
Query: 26 VVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 85
++LLG+ +GKSATGN+ILG+ FK+ V K C+ ++ VL++ +VV VIDTP LF
Sbjct: 13 LLLLGKCRSGKSATGNAILGKHVFKSKFSDQTVIKMCQRESWVLRERKVV-VIDTPDLFS 71
Query: 86 SSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEAANGGQPYTDEFLAELKRG 145
S A +E + I + L+ +HA+L+V ++ ++EE A G Q F AE +R
Sbjct: 72 SIACAEDKQRNIQHCLELSAPSLHALLLVIAIGHFTREDEETAKGIQQV---FGAEARRH 128
Query: 146 ATELRDQQAEVDSLKEYSKQEISKLMGQMQESYEDQIKRITEMVESELKETTTRLE 201
+ ++ ++ E +K + Q+ + YE + S+ ++ T LE
Sbjct: 129 IIIVFTRKDDLGDDLLQDFIEKNKPLKQLVQDYEGRYCIFNNKTNSKDEQITQVLE 184
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 59/107 (55%), Gaps = 5/107 (4%)
Query: 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPG-- 82
+VL+GR+G GKSATGNSILG F + + VTKT + DGQ V V+DTP
Sbjct: 440 NIVLVGRSGTGKSATGNSILGSLVFTSRLRAQPVTKTSQSGRRTW-DGQEVVVVDTPSFN 498
Query: 83 -LFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEAA 128
+ D + +E+ + + + G ++VF + RF++E++ A
Sbjct: 499 QMLDVEKDPSRLEEEVKRCLSCCEKGDTFFVLVFQL-GRFTEEDKTA 544
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 82/160 (51%), Gaps = 18/160 (11%)
Query: 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 84
TV+L+G+ G GKSA GNSILGR+AF+ VT++ ++ + + V++ID P +
Sbjct: 249 TVLLVGKRGAGKSAAGNSILGRQAFQTGFSEQSVTQSFLSESRSWRKKK-VSIIDAPDI- 306
Query: 85 DSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEAA------NGGQPYTDEF 138
+ + + E+ K I G HA L+V + +++ +EA N G+ + +
Sbjct: 307 ---SSLKNIDSEVRKHIC---TGPHAFLLVTPL-GFYTKNDEAVLSTIQNNFGEKFFEYM 359
Query: 139 LAELKRGATELRDQQAEVDSLKEYSKQEISKLMGQMQESY 178
+ L R +L DQ ++D+ S + + L+ + + Y
Sbjct: 360 IILLTR-KEDLGDQ--DLDTFLRNSNKALYGLIQKCKNRY 396
>sp|Q96F15|GIMA5_HUMAN GTPase IMAP family member 5 OS=Homo sapiens GN=GIMAP5 PE=1 SV=1
Length = 307
Score = 77.4 bits (189), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 67/103 (65%), Gaps = 2/103 (1%)
Query: 26 VVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 85
++L+G+TG GKSATGNSILG+ F++ + VT+TC++KT +G+ V V+DTP +F+
Sbjct: 30 IILVGKTGCGKSATGNSILGQPVFESKLRAQSVTRTCQVKTGTW-NGRKVLVVDTPSIFE 88
Query: 86 SSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEAA 128
S A ++ + K I L+ G H +L+V + RF+ ++ A
Sbjct: 89 SQADTQELYKNIGDCYLLSAPGPHVLLLVIQL-GRFTAQDTVA 130
>sp|Q8K349|GIMA6_MOUSE GTPase IMAP family member 6 OS=Mus musculus GN=Gimap6 PE=2 SV=1
Length = 305
Score = 73.9 bits (180), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 45/102 (44%), Positives = 65/102 (63%), Gaps = 4/102 (3%)
Query: 26 VVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 85
++L+G+TG+GKSATGNSILGR+AF++ + VT T + K T +G+ + VIDTP +F
Sbjct: 106 LLLVGKTGSGKSATGNSILGRQAFESKISARPVTTTFQ-KGTREFEGKELEVIDTPDIFS 164
Query: 86 SSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA 127
E K+I LA G HAVL+V V R++ E++A
Sbjct: 165 PQNQPEATAKKICDL--LASPGPHAVLLVIQV-GRYTAEDQA 203
>sp|Q8NHV1|GIMA7_HUMAN GTPase IMAP family member 7 OS=Homo sapiens GN=GIMAP7 PE=2 SV=1
Length = 300
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 65/101 (64%), Gaps = 2/101 (1%)
Query: 26 VVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 85
+VL+G+TG+GKSAT N+ILG + F + + VTK C+ K + G+ + V+DTPGLFD
Sbjct: 11 IVLVGKTGSGKSATANTILGEEIFDSRIAAQAVTKNCQ-KASREWQGRDLLVVDTPGLFD 69
Query: 86 SSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEE 126
+ + KEI + I + G HA+++V + R+++EE+
Sbjct: 70 TKESLDTTCKEISRCIISSCPGPHAIVLVL-LLGRYTEEEQ 109
>sp|Q6P9H5|GIMA6_HUMAN GTPase IMAP family member 6 OS=Homo sapiens GN=GIMAP6 PE=2 SV=1
Length = 292
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 62/101 (61%), Gaps = 3/101 (2%)
Query: 26 VVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 85
++L+G+TG+GKSATGNSILGR F++ + VTKT + ++ G+ + VIDTP +
Sbjct: 43 LILMGKTGSGKSATGNSILGRDVFESKLSTRPVTKTSQRRSREWA-GKELEVIDTPNILS 101
Query: 86 SSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEE 126
E V I + I L+ G HAVL+V + RF+ E++
Sbjct: 102 PQVSPE-VADAICQAIVLSAPGPHAVLLVTQL-GRFTDEDQ 140
>sp|Q9UG22|GIMA2_HUMAN GTPase IMAP family member 2 OS=Homo sapiens GN=GIMAP2 PE=1 SV=2
Length = 337
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 68/119 (57%), Gaps = 5/119 (4%)
Query: 14 WKPTS----SSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVL 69
W P + +S + ++L+G+TG GKSA GNSIL ++AF++ S +TKTC
Sbjct: 9 WGPHAKGQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW 68
Query: 70 KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEAA 128
+ ++V +IDTP +F E + KE+ + L+ G H +L+V + SQ+++AA
Sbjct: 69 GNREIV-IIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAA 126
>sp|Q5FVN6|GIMA6_RAT GTPase IMAP family member 6 OS=Rattus norvegicus GN=Gimap6 PE=2
SV=1
Length = 304
Score = 68.2 bits (165), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 62/103 (60%), Gaps = 3/103 (2%)
Query: 26 VVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 85
++L+G+TG+GKSATGNSILGR+ F++ + VT + + L +G+ + VIDTP +
Sbjct: 105 LLLVGKTGSGKSATGNSILGRQVFESKISARPVTMAFQKGSREL-EGKELEVIDTPDILS 163
Query: 86 SSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEAA 128
E K+I LA G HAVL+V V ++++EAA
Sbjct: 164 PQNQPEATAKKICDI--LASPGPHAVLLVIQVGRYTTEDQEAA 204
>sp|Q8BWF2|GIMA5_MOUSE GTPase IMAP family member 5 OS=Mus musculus GN=Gimap5 PE=2 SV=1
Length = 308
Score = 67.4 bits (163), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 64/103 (62%), Gaps = 2/103 (1%)
Query: 26 VVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 85
++L+G++G GKSATGNSIL R AF++ VT+T + +T +G+ + V+DTP +F+
Sbjct: 29 ILLVGKSGCGKSATGNSILRRPAFQSRLRGQSVTRTSQAETGTW-EGRSILVVDTPPIFE 87
Query: 86 SSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEAA 128
S A ++ + K+I L G H +L+V + RF+ E+ A
Sbjct: 88 SKAQNQDMDKDIGDCYLLCAPGPHVLLLVTQL-GRFTAEDAMA 129
>sp|P70224|GIMA1_MOUSE GTPase IMAP family member 1 OS=Mus musculus GN=Gimap1 PE=1 SV=3
Length = 277
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 76/142 (53%), Gaps = 17/142 (11%)
Query: 26 VVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 85
++L+GRTG GKSATGNSILG+K F + + VT++C + + + Q V V+DTP +F
Sbjct: 6 LILVGRTGTGKSATGNSILGQKCFLSRLGAVPVTRSCTLASRMWAGWQ-VEVVDTPDIFS 64
Query: 86 SSAGSEFVGK-EIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEAANGGQPYTDEFLAELKR 144
S G E + L+ G HA+L+V + RF+ ++ A LA +KR
Sbjct: 65 SEIPRTDPGCVETARCFVLSAPGPHALLLVTQL-GRFTMQDSQA----------LAAVKR 113
Query: 145 GATELRDQQAEVDSLKEYSKQE 166
L +Q ++ +++QE
Sbjct: 114 ----LFGKQVMARTVVVFTRQE 131
>sp|Q99MI6|GIMA3_MOUSE GTPase IMAP family member 3 OS=Mus musculus GN=Gimap3 PE=1 SV=2
Length = 301
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 68/112 (60%), Gaps = 3/112 (2%)
Query: 17 TSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVN 76
TS S R ++L+G++G GKSATGNS+L R AF++ VT+T + +T +G+ +
Sbjct: 17 TSGSRPLR-ILLVGKSGCGKSATGNSLLRRPAFESRLRGQSVTRTSQAETGTW-EGRSIL 74
Query: 77 VIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEAA 128
V+DTP +F+S A ++ + K+I L G H +L+V + RF+ E+ A
Sbjct: 75 VVDTPPIFESKAQNQDMDKDIGDCYLLCAPGPHVLLLVTQL-GRFTAEDVMA 125
>sp|Q75N62|GIMA8_MOUSE GTPase IMAP family member 8 OS=Mus musculus GN=Gimap8 PE=2 SV=1
Length = 688
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 74/129 (57%), Gaps = 8/129 (6%)
Query: 2 SSGMGERVI-----DGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSS 56
S G GER +G++K ++ R ++LLG+ G GKSATGN+ILG+ F++
Sbjct: 23 SVGQGERPSASQGQEGNFKQNQGTSTLR-LLLLGKQGAGKSATGNTILGKAVFESKFSDH 81
Query: 57 GVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFS 116
VT C+ ++ ++ QV+ VIDTP LF S + SE V ++ +K+ H VL++ +
Sbjct: 82 MVTDRCQSESVSVRGKQVI-VIDTPDLFSSLSCSE-VRQQNLKQCLELLADDHCVLLLVT 139
Query: 117 VRSRFSQEE 125
+++E+
Sbjct: 140 PIGHYTEED 148
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 62/108 (57%), Gaps = 7/108 (6%)
Query: 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 84
++LLGR+G GKSATGN+ILGR AF + + VT + + L D Q V V+DTP F
Sbjct: 477 NIILLGRSGAGKSATGNTILGRSAFFSQLRAQPVTSSSQSGKRTL-DWQDVVVVDTPS-F 534
Query: 85 DSSAGSE----FVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEAA 128
+ G+E + +EI + L + G+ ++V + RF+QE+E
Sbjct: 535 IQTPGTEKDPSRLKEEIHHCLSLCEEGMKIFVLVLQL-GRFTQEDEVV 581
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 26 VVLLGRTGNGKSATGNSILGRKAFKAS-ADSSGVTKTCEMKTTVLKDGQVVNVIDTP 81
V+L+G+ G GKSA GNSILG++ FK ++ VTK + V + G+ V +ID+P
Sbjct: 287 VLLMGKRGVGKSAAGNSILGKQVFKTQFSEKQRVTKAFASHSRVWQ-GKKVLIIDSP 342
>sp|Q8WWP7|GIMA1_HUMAN GTPase IMAP family member 1 OS=Homo sapiens GN=GIMAP1 PE=1 SV=1
Length = 306
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 62/110 (56%), Gaps = 11/110 (10%)
Query: 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 83
R ++L+GRTG GKSATGNSILG++ F + ++ VT+ C + D V V+DTP +
Sbjct: 28 RRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRW-DKCHVEVVDTPDI 86
Query: 84 FDS-----SAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEAA 128
F S G E G + L+ G HA+L+V + RF+ +++ A
Sbjct: 87 FSSQVSKTDPGCEERGHCYL----LSAPGPHALLLVTQL-GRFTAQDQQA 131
>sp|Q8K3L6|GIMA5_RAT GTPase IMAP family member 5 OS=Rattus norvegicus GN=Gimap5 PE=2
SV=1
Length = 326
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 26 VVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKT--CEMKTTVLKDGQVVNVIDTPGL 83
++L+G++G GKSATGNSIL R AF++ VT+T EM T +G+ V+DTP +
Sbjct: 47 ILLVGKSGCGKSATGNSILRRPAFESRLRGQSVTRTSQAEMGTW---EGRSFLVVDTPPI 103
Query: 84 FDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEAA 128
F+S ++ + K+I + G H +L+V + R++ E+ A
Sbjct: 104 FESKIQNQDMDKDIGNCYLMCAPGPHVLLLVTQL-GRYTVEDAMA 147
>sp|Q4KLG2|GIMA8_RAT GTPase IMAP family member 8 OS=Rattus norvegicus GN=Gimap8 PE=2
SV=1
Length = 688
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 62/109 (56%), Gaps = 8/109 (7%)
Query: 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 84
++LLGR+G GKSATGN+ILGR AF + + VT + L D Q + V+DTP L
Sbjct: 476 NIILLGRSGVGKSATGNTILGRPAFVSQLRAQPVTSRSQSGRRTL-DWQDIVVVDTPSL- 533
Query: 85 DSSAGSEFVGKEIVKRIGL-----AKGGIHAVLVVFSVRSRFSQEEEAA 128
+ +G+E ++ K I + G+ ++VF + RF+QE+EA
Sbjct: 534 NQMSGTEKNPAQLKKEIKQCLLQNCEEGMKVFVLVFQL-GRFTQEDEAV 581
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 26 VVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 85
++LLG+ G GKSATGN+ILG+ F++ VTK C+ ++ ++ QV+ VIDTP LF
Sbjct: 51 LLLLGKQGAGKSATGNTILGKAVFESRFSHHMVTKRCQSESVSVRGKQVI-VIDTPDLFS 109
Query: 86 SSAGSE 91
S E
Sbjct: 110 SLGCPE 115
Score = 37.4 bits (85), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 21/25 (84%)
Query: 26 VVLLGRTGNGKSATGNSILGRKAFK 50
V+L+G+ G GKSA GNSILG++ FK
Sbjct: 286 VLLMGKRGVGKSAAGNSILGKQVFK 310
>sp|A5PKB7|GIMA6_BOVIN GTPase IMAP family member 6 OS=Bos taurus GN=GIMAP6 PE=2 SV=1
Length = 341
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 62/109 (56%), Gaps = 10/109 (9%)
Query: 26 VVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 85
++L+G++G+GKSATGNSILGR+ F++ + VT+ + +G+ + VIDTP +
Sbjct: 96 LILVGKSGSGKSATGNSILGRRVFESKLSARPVTQAFQQGCRAW-EGRELQVIDTPDILS 154
Query: 86 SSAGSEFVGKEIVKRIGLAKGGI----HAVLVVFSVRSRFSQEEEAANG 130
A G + +G A G +AVL+V + RF++E++ G
Sbjct: 155 PWA----AGWATAQGVGEAGTGSLPKQYAVLLVTQL-GRFTEEDQQVAG 198
>sp|Q9LVT3|DRL38_ARATH Probable disease resistance protein At5g47260 OS=Arabidopsis
thaliana GN=At5g47260 PE=3 SV=2
Length = 948
Score = 51.2 bits (121), Expect = 6e-06, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 41/66 (62%)
Query: 17 TSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVN 76
TS S+ +T+ L+G TG+G++AT N+I G+K ++ ++ VT C+ D + N
Sbjct: 875 TSESHPIQTIDLVGTTGSGETATANNIQGKKVVQSGTHATVVTMECQTYKVFTPDCPINN 934
Query: 77 VIDTPG 82
+IDTPG
Sbjct: 935 MIDTPG 940
>sp|G3MZQ6|GIMD1_BOVIN GTPase IMAP family member GIMD1 OS=Bos taurus GN=GIMD1 PE=3 SV=1
Length = 216
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 82/189 (43%), Gaps = 20/189 (10%)
Query: 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVT------KTCEMKTTVLKDGQ----V 74
+ L G T +GKS+ GN ILG F +S VT ++C ++ + + GQ
Sbjct: 9 NLALFGMTQSGKSSAGNIILGSTDFHSSFAPCSVTRDCSLGRSCHFRSFMRRGGQEVTLQ 68
Query: 75 VNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKG--GIHAVLVVFSVRSRFSQEEEAANG-- 130
V V+DTPG S + V +E+ + + G G+H L+V +EE++
Sbjct: 69 VQVLDTPGYPHSRLSKKHVRQEVREALAHHFGQEGLHLALLVQRADVPLCGQEESSPVQM 128
Query: 131 -----GQPYTDEFLAELKRGATELRDQQAEVDSLKEYSKQEISKLMGQMQESYEDQIKRI 185
G + + + A L A ++ + D + + + KL+ +Q Y Q K+
Sbjct: 129 IQELLGHTWMN-YTAILFTHAEKIEEAGFNEDEYLREASETLLKLLNSIQHRYIFQYKKG 187
Query: 186 TEMVESELK 194
+ E LK
Sbjct: 188 NSLSEQRLK 196
>sp|P0DJR0|GIMD1_HUMAN GTPase IMAP family member GIMD1 OS=Homo sapiens GN=GIMD1 PE=2 SV=1
Length = 217
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 20/123 (16%)
Query: 26 VVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTV----------LKDGQVV 75
+ L G T +GKS+ GN +LG F +S VT C + + L+ V
Sbjct: 11 LALFGMTQSGKSSAGNILLGSTDFHSSFAPCSVTTCCSLGRSCHLHSFMRRGGLEVALQV 70
Query: 76 NVIDTPGLFDSSAGSEFVGKEIVKRIG--LAKGGIHAVLVVFSVRSRFSQEEEAANGGQP 133
V+DTPG S ++V +E+ + + +GG+H L+V Q + GQ
Sbjct: 71 QVLDTPGYPHSRLSKKYVKQEVKEALAHHFGQGGLHLALLV--------QRADVPFCGQE 122
Query: 134 YTD 136
TD
Sbjct: 123 VTD 125
>sp|E9PW74|GIMD1_MOUSE GTPase IMAP family member GIMD1 OS=Mus musculus GN=Gimd1 PE=3 SV=1
Length = 217
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 12/102 (11%)
Query: 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQV---------- 74
+ + GRT +GKS+ GN +LG F +S VTK C + + G +
Sbjct: 10 NLAVFGRTQSGKSSAGNVLLGSADFYSSFAPGSVTKECSLGRSCHLHGFMRRGGQEISLQ 69
Query: 75 VNVIDTPGLFDSSAGSEFVGKEIVKRI--GLAKGGIHAVLVV 114
+ V+DTPG S + V +E+ K + + G+H L+V
Sbjct: 70 IQVLDTPGYPHSKLSTRCVKQEVKKALLHHFGQEGLHLALLV 111
>sp|B0BMZ3|GIMD1_RAT GTPase IMAP family member GIMD1 OS=Rattus norvegicus GN=Gimd1 PE=2
SV=1
Length = 216
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 12/113 (10%)
Query: 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQV---------- 74
+ +LG+T +GKS+ GN +LG F + VTK C + + G +
Sbjct: 9 NLAVLGKTQSGKSSAGNVLLGSADFYSRFAPGSVTKDCSLGRSCHIHGFMRRGGHEISLQ 68
Query: 75 VNVIDTPGLFDSSAGSEFVGKEIVKRI--GLAKGGIHAVLVVFSVRSRFSQEE 125
+ V+DTPG S + V +E+ K + + G+H L+V F +E
Sbjct: 69 IQVLDTPGYPHSKLSTRCVKQEVKKALEHHFGQEGLHLALLVHRADMPFFGQE 121
>sp|Q552Z6|GTPA_DICDI GTP-binding protein A OS=Dictyostelium discoideum GN=gtpA PE=3 SV=1
Length = 449
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 50/92 (54%), Gaps = 7/92 (7%)
Query: 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 84
V+LLGRTG GKS+T N++ G S++S T+ + V+ +G +N+IDTPG
Sbjct: 153 NVLLLGRTGVGKSSTLNTVFGIDIPVHSSES--CTQDPFTYSRVV-NGFKLNIIDTPGFL 209
Query: 85 DSSAGSEFVGKEIVKRI--GLAKGGIHAVLVV 114
DS E V + +I L+ IH VL V
Sbjct: 210 DSQG--ELVDSNNMIKIQRYLSGKTIHCVLFV 239
>sp|Q38906|TOC34_ARATH Translocase of chloroplast 34, chloroplastic OS=Arabidopsis
thaliana GN=TOC34 PE=1 SV=2
Length = 313
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 4/62 (6%)
Query: 25 TVVLLGRTGNGKSATGNSILGRKAFKASA-DSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 83
TV+++G+ G GKS+T NS++G KA S S G+ T +T + G +N+IDTPGL
Sbjct: 40 TVLVMGKGGVGKSSTVNSVIGEKAAAVSTFQSEGLRPTLVSRT---RSGFTLNIIDTPGL 96
Query: 84 FD 85
+
Sbjct: 97 IE 98
>sp|Q6S5G3|TOC90_ARATH Translocase of chloroplast 90, chloroplastic OS=Arabidopsis
thaliana GN=TOC90 PE=1 SV=1
Length = 793
Score = 43.9 bits (102), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 26 VVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 85
+++LG+TG GKSAT NSI G+ + A G + E+ TV G V IDTPG
Sbjct: 169 ILVLGKTGVGKSATINSIFGQPKSETDAFRPGTDRIEEVMGTV--SGVKVTFIDTPGFHP 226
Query: 86 SSAGSEFVGKEIVKRI 101
S+ S ++I+ I
Sbjct: 227 LSSSSTRKNRKILLSI 242
>sp|Q8Y7F0|RSGA1_LISMO Putative ribosome biogenesis GTPase RsgA 1 OS=Listeria
monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
GN=rsgA1 PE=3 SV=1
Length = 346
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 12/85 (14%)
Query: 3 SGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASA----DSSGV 58
S G ++ D KP S T++LLG +G GKS+ NS+ G K + DS G
Sbjct: 169 SHHGFEALESDLKPNS------TLILLGSSGVGKSSFINSLAGTDLMKTAGIREDDSKGK 222
Query: 59 TKTCEMKTTVLKDGQVVNVIDTPGL 83
T + +L +G + VIDTPG+
Sbjct: 223 HTTTHREMHLLSNGWI--VIDTPGM 245
>sp|Q92C22|RSGA1_LISIN Putative ribosome biogenesis GTPase RsgA 1 OS=Listeria innocua
serovar 6a (strain CLIP 11262) GN=rsgA1 PE=3 SV=1
Length = 346
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 12/85 (14%)
Query: 3 SGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASA----DSSGV 58
S G ++ D KP S T+VLLG +G GKS+ NS+ G K S DS G
Sbjct: 169 SHRGFEALEADLKPNS------TLVLLGSSGVGKSSFINSLAGADLMKTSEIREDDSKGK 222
Query: 59 TKTCEMKTTVLKDGQVVNVIDTPGL 83
T + +L +G + +IDTPG+
Sbjct: 223 HTTTHREMHLLANGWI--IIDTPGM 245
>sp|Q71ZZ0|RSGA2_LISMF Putative ribosome biogenesis GTPase RsgA 2 OS=Listeria
monocytogenes serotype 4b (strain F2365) GN=rsgA2 PE=3
SV=1
Length = 346
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 12/98 (12%)
Query: 3 SGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASA----DSSGV 58
S G ++ D KP S T+VLLG +G GKS+ NS+ G K + DS G
Sbjct: 169 SHHGFEALERDLKPNS------TLVLLGSSGVGKSSFINSLAGTDLMKTAGIREDDSKGK 222
Query: 59 TKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKE 96
T + +L +G + VIDTPG+ + G G E
Sbjct: 223 HTTTHREMHLLTNGWI--VIDTPGMREFGVGFNQAGLE 258
>sp|O81283|TC159_ARATH Translocase of chloroplast 159, chloroplastic OS=Arabidopsis
thaliana GN=TOC159 PE=1 SV=1
Length = 1503
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 83
+++LG+ G GKSAT NSILG + AS D+ G++ T + + +G + IDTPGL
Sbjct: 857 NILVLGKAGVGKSATINSILGNQI--ASIDAFGLSTTSVREISGTVNGVKITFIDTPGL 913
>sp|A4VS81|MNME_PSEU5 tRNA modification GTPase MnmE OS=Pseudomonas stutzeri (strain
A1501) GN=mnmE PE=3 SV=1
Length = 455
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 84
TVV+ GR GKS+ N++ GR+A + D +G T+ ++ +L DG ++V+DT GL
Sbjct: 218 TVVIAGRPNAGKSSLLNALAGREAAIVT-DIAGTTRDV-LREHILIDGMPLHVVDTAGLR 275
Query: 85 DSSAGSEFVG 94
D+ E +G
Sbjct: 276 DTEDQVERIG 285
>sp|Q15MS9|MNME_PSEA6 tRNA modification GTPase MnmE OS=Pseudoalteromonas atlantica
(strain T6c / ATCC BAA-1087) GN=mnmE PE=3 SV=1
Length = 460
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 26 VVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 85
VV+ GR GKS+ N++ GR A +A +G T+ +K + DG +++IDT GL D
Sbjct: 225 VVIAGRPNAGKSSLLNALAGRDAAIVTA-IAGTTRDV-LKEHIHIDGMPLHIIDTAGLRD 282
Query: 86 SSAGSEFVGKE 96
SS E +G E
Sbjct: 283 SSDEVERIGIE 293
>sp|A4Y199|MNME_PSEMY tRNA modification GTPase MnmE OS=Pseudomonas mendocina (strain ymp)
GN=mnmE PE=3 SV=1
Length = 455
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Query: 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 84
TVV+ GR GKS+ N++ GR+A + D +G T+ ++ + DG ++V+DT GL
Sbjct: 218 TVVIAGRPNAGKSSLLNALAGREAAIVT-DIAGTTRDV-LREHIHIDGMPLHVVDTAGLR 275
Query: 85 DSSAGSEFVGKE-IVKRIG 102
D+ E +G E +K IG
Sbjct: 276 DTDDQVERIGVERALKAIG 294
>sp|Q7MAX1|MNME_PHOLL tRNA modification GTPase MnmE OS=Photorhabdus luminescens subsp.
laumondii (strain TT01) GN=mnmE PE=3 SV=1
Length = 454
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 78/169 (46%), Gaps = 25/169 (14%)
Query: 26 VVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 85
VV+ GR GKS+ N++ GR+A + D +G T+ ++ + DG +++IDT GL +
Sbjct: 219 VVIAGRPNAGKSSLLNALAGREAAIVT-DIAGTTRDV-LREHIHIDGMPLHIIDTAGLRE 276
Query: 86 SSAGSEFVGKEIVKRIGLAKGGI---HAVLVVFSVRSRFSQEEEAANGGQPYTDEFLAEL 142
+S + V+RIG+ + A V+F V S + E EF+A L
Sbjct: 277 AS--------DEVERIGIERAWQEIEQADRVLFMVDSTTTNAVEPVE----IWPEFMARL 324
Query: 143 K--------RGATELRDQQAEVDSLKEYSKQEISKLMGQMQESYEDQIK 183
R T++ D++ + + YS +S G+ + D +K
Sbjct: 325 PKSLPITVVRNKTDMTDEETSIAEVSGYSLIRLSARSGEGIDLLRDHLK 373
>sp|Q9HT07|MNME_PSEAE tRNA modification GTPase MnmE OS=Pseudomonas aeruginosa (strain
ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=mnmE
PE=3 SV=1
Length = 455
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Query: 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 84
TVV+ GR GKS+ N++ GR+A + D +G T+ ++ + DG ++V+DT GL
Sbjct: 218 TVVIAGRPNAGKSSLLNALAGREAAIVT-DIAGTTRDV-LREHIHIDGMPLHVVDTAGLR 275
Query: 85 DSSAGSEFVGKE-IVKRIG 102
D+ E +G E +K IG
Sbjct: 276 DTEDHVEKIGVERALKAIG 294
>sp|Q02DE1|MNME_PSEAB tRNA modification GTPase MnmE OS=Pseudomonas aeruginosa (strain
UCBPP-PA14) GN=mnmE PE=3 SV=1
Length = 455
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Query: 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 84
TVV+ GR GKS+ N++ GR+A + D +G T+ ++ + DG ++V+DT GL
Sbjct: 218 TVVIAGRPNAGKSSLLNALAGREAAIVT-DIAGTTRDV-LREHIHIDGMPLHVVDTAGLR 275
Query: 85 DSSAGSEFVGKE-IVKRIG 102
D+ E +G E +K IG
Sbjct: 276 DTEDHVEKIGVERALKAIG 294
>sp|Q31DJ0|MNME_THICR tRNA modification GTPase MnmE OS=Thiomicrospira crunogena (strain
XCL-2) GN=mnmE PE=3 SV=2
Length = 451
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 97/218 (44%), Gaps = 25/218 (11%)
Query: 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 84
+VV+LGR GKS+ N++ GR++ + D +G T+ +K + DG ++V+DT GL
Sbjct: 219 SVVILGRPNAGKSSLLNALSGRESAIVT-DIAGTTRDI-VKEEIQIDGMPLHVLDTAGLR 276
Query: 85 DSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEAANGGQPYTDEFL----- 139
+++ E +G ++R A +LV+ E++A P
Sbjct: 277 EATDAVEQIG---IQRAWAAIEEADRILVMVQANEAIHPEDQAILEKMPSHIPVTLIHNK 333
Query: 140 AELKRGATELRDQQAE------------VDSLKEYSKQEISKLMGQMQESYEDQIKRITE 187
+L + EL + E +D LK++ K E+ Q +E KR E
Sbjct: 334 IDLIEKSPELSENDGETEIWLSAKHHLGLDLLKQHLKTEMG--YAQTEEGVFMARKRHLE 391
Query: 188 MVESELKETTTRLEQQLAEEQAARLMAEEVAQLAQMKS 225
+E+ L T +QQL A L+AE++ Q Q S
Sbjct: 392 ALETALHFVETG-QQQLEHFAAGELLAEDLRQAQQALS 428
>sp|A6VF44|MNME_PSEA7 tRNA modification GTPase MnmE OS=Pseudomonas aeruginosa (strain
PA7) GN=mnmE PE=3 SV=1
Length = 455
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Query: 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 84
TVV+ GR GKS+ N++ GR+A + D +G T+ ++ + DG ++V+DT GL
Sbjct: 218 TVVIAGRPNAGKSSLLNALAGREAAIVT-DIAGTTRDV-LREHIHIDGMPLHVVDTAGLR 275
Query: 85 DSSAGSEFVGKE-IVKRIG 102
D+ E +G E +K IG
Sbjct: 276 DTEDHVEKIGVERALKAIG 294
>sp|Q9SLF3|TC132_ARATH Translocase of chloroplast 132, chloroplastic OS=Arabidopsis
thaliana GN=TOC132 PE=1 SV=1
Length = 1206
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 84
T+++LG++G GKSAT NSI F A G + +++ V G V VIDTPGL
Sbjct: 576 TIMVLGKSGVGKSATINSIFDEVKFCTDAFQMGTKRVQDVEGLV--QGIKVRVIDTPGLL 633
Query: 85 DS 86
S
Sbjct: 634 PS 635
>sp|B2VCE7|MNME_ERWT9 tRNA modification GTPase MnmE OS=Erwinia tasmaniensis (strain DSM
17950 / Et1/99) GN=mnmE PE=3 SV=1
Length = 454
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 102/227 (44%), Gaps = 48/227 (21%)
Query: 26 VVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 85
VV+ GR GKS+ N++ GR+A + D +G T+ ++ + DG +++IDT GL +
Sbjct: 219 VVIAGRPNAGKSSLLNALAGREAAIVT-DIAGTTRDV-LREHIHIDGMPLHIIDTAGLRE 276
Query: 86 SSAGSEFVGKEIVKRIGLAKGGIHAV----LVVFSVRSRFSQEEEAANGGQPYTDEFLAE 141
+S + V+RIG+ + H + V+F V + EA N + + D F+A
Sbjct: 277 AS--------DEVERIGIERAW-HEIEQADHVLFMVDGTTT---EATNPAEIWPD-FIAR 323
Query: 142 LK--------RGATELRDQQAEVDSLKEYSKQEISKLMGQMQESYEDQIK---------- 183
L R ++ + V+ + +S +S G+ E+ D +K
Sbjct: 324 LPESLPVTVVRNKADITGETRGVEEVNGHSLIRLSARTGEGIENLRDHLKSSMGFSGNME 383
Query: 184 -----RITEMVESELKETTTRLEQ---QLAEEQAARLMAEEVAQLAQ 222
R + EL T LEQ QL A L+AEE+ +LAQ
Sbjct: 384 GGFLARRRHLQALEL--AATHLEQGKHQLLAAWAGELLAEEL-RLAQ 427
>sp|A9MJT6|MNME_SALAR tRNA modification GTPase MnmE OS=Salmonella arizonae (strain ATCC
BAA-731 / CDC346-86 / RSK2980) GN=mnmE PE=3 SV=2
Length = 454
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 26 VVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 85
VV+ GR GKS+ N++ GR+A + D +G T+ ++ + DG ++VIDT GL D
Sbjct: 219 VVIAGRPNAGKSSLLNALAGREAAIVT-DIAGTTRDV-LREHIHIDGMPLHVIDTAGLRD 276
Query: 86 SSAGSEFVGKE 96
+S E +G E
Sbjct: 277 ASDEVERIGIE 287
>sp|Q1I2H5|MNME_PSEE4 tRNA modification GTPase MnmE OS=Pseudomonas entomophila (strain
L48) GN=mnmE PE=3 SV=1
Length = 456
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 84
TVV+ GR GKS+ N + GR+A + D +G T+ ++ + DG ++V+DT GL
Sbjct: 218 TVVIAGRPNAGKSSLLNQLAGREAAIVT-DIAGTTRDV-LREHIHIDGMPLHVVDTAGLR 275
Query: 85 DSSAGSEFVGKE-IVKRIG 102
D+ E +G E +K IG
Sbjct: 276 DTDDHVEKIGVERALKAIG 294
>sp|C6DK97|MNME_PECCP tRNA modification GTPase MnmE OS=Pectobacterium carotovorum subsp.
carotovorum (strain PC1) GN=mnmE PE=3 SV=1
Length = 454
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 26 VVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 85
VV+ GR GKS+ N++ GR+A + D +G T+ ++ + DG +++IDT GL D
Sbjct: 219 VVIAGRPNAGKSSLLNALAGREAAIVT-DIAGTTRDV-LREHIHIDGMPLHIIDTAGLRD 276
Query: 86 SSAGSEFVGKE 96
+S E +G E
Sbjct: 277 ASDEVERIGIE 287
>sp|A8ACL8|MNME_CITK8 tRNA modification GTPase MnmE OS=Citrobacter koseri (strain ATCC
BAA-895 / CDC 4225-83 / SGSC4696) GN=mnmE PE=3 SV=2
Length = 454
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 26 VVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 85
VV+ GR GKS+ N++ GR+A + D +G T+ ++ + DG +++IDT GL D
Sbjct: 219 VVIAGRPNAGKSSLLNALAGREAAIVT-DIAGTTRDV-LREHIHIDGMPLHIIDTAGLRD 276
Query: 86 SSAGSEFVGKE 96
+S E +G E
Sbjct: 277 ASDEVERIGIE 287
>sp|B5XZP4|MNME_KLEP3 tRNA modification GTPase MnmE OS=Klebsiella pneumoniae (strain 342)
GN=mnmE PE=3 SV=1
Length = 454
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 26 VVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 85
VV+ GR GKS+ N++ GR+A + D +G T+ ++ + DG +++IDT GL D
Sbjct: 219 VVIAGRPNAGKSSLLNALAGREAAIVT-DIAGTTRDV-LREHIHIDGMPLHIIDTAGLRD 276
Query: 86 SSAGSEFVGKE 96
+S E +G E
Sbjct: 277 ASDEVERIGIE 287
>sp|A4WGH1|MNME_ENT38 tRNA modification GTPase MnmE OS=Enterobacter sp. (strain 638)
GN=mnmE PE=3 SV=1
Length = 454
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 26 VVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 85
VV+ GR GKS+ N++ GR+A + D +G T+ ++ + DG +++IDT GL D
Sbjct: 219 VVIAGRPNAGKSSLLNALAGREAAIVT-DIAGTTRDV-LREHIHIDGMPLHIIDTAGLRD 276
Query: 86 SSAGSEFVGKE 96
+S E +G E
Sbjct: 277 ASDEVERIGIE 287
>sp|Q8ZKY3|MNME_SALTY tRNA modification GTPase MnmE OS=Salmonella typhimurium (strain LT2
/ SGSC1412 / ATCC 700720) GN=mnmE PE=3 SV=1
Length = 454
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 26 VVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 85
VV+ GR GKS+ N++ GR+A + D +G T+ ++ + DG +++IDT GL D
Sbjct: 219 VVIAGRPNAGKSSLLNALAGREAAIVT-DIAGTTRDV-LREHIHIDGMPLHIIDTAGLRD 276
Query: 86 SSAGSEFVGKE 96
+S E +G E
Sbjct: 277 ASDEVERIGIE 287
>sp|B5RFY2|MNME_SALG2 tRNA modification GTPase MnmE OS=Salmonella gallinarum (strain
287/91 / NCTC 13346) GN=mnmE PE=3 SV=1
Length = 454
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 26 VVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 85
VV+ GR GKS+ N++ GR+A + D +G T+ ++ + DG +++IDT GL D
Sbjct: 219 VVIAGRPNAGKSSLLNALAGREAAIVT-DIAGTTRDV-LREHIHIDGMPLHIIDTAGLRD 276
Query: 86 SSAGSEFVGKE 96
+S E +G E
Sbjct: 277 ASDEVERIGIE 287
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.126 0.331
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,387,942
Number of Sequences: 539616
Number of extensions: 3083092
Number of successful extensions: 21115
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 1060
Number of HSP's that attempted gapping in prelim test: 20036
Number of HSP's gapped (non-prelim): 1984
length of query: 231
length of database: 191,569,459
effective HSP length: 114
effective length of query: 117
effective length of database: 130,053,235
effective search space: 15216228495
effective search space used: 15216228495
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 59 (27.3 bits)