Query 038053
Match_columns 231
No_of_seqs 204 out of 3194
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 07:06:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038053.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038053hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02421 FeoB_N: Ferrous iron 99.9 2.9E-21 6.3E-26 144.5 9.7 142 25-174 2-156 (156)
2 COG1160 Predicted GTPases [Gen 99.8 7.1E-21 1.5E-25 161.0 10.5 150 24-178 4-164 (444)
3 COG1159 Era GTPase [General fu 99.8 1.2E-19 2.6E-24 146.1 13.1 150 25-180 8-173 (298)
4 COG1160 Predicted GTPases [Gen 99.8 4.5E-20 9.7E-25 156.2 10.2 173 23-197 178-370 (444)
5 cd01852 AIG1 AIG1 (avrRpt2-ind 99.8 6.8E-19 1.5E-23 138.0 11.0 102 24-127 1-102 (196)
6 PF04548 AIG1: AIG1 family; I 99.8 2.5E-18 5.4E-23 136.4 13.2 102 24-127 1-102 (212)
7 COG0486 ThdF Predicted GTPase 99.8 2.2E-18 4.8E-23 146.4 12.6 156 18-181 214-378 (454)
8 COG0370 FeoB Fe2+ transport sy 99.8 3E-18 6.5E-23 151.3 11.8 151 24-181 4-166 (653)
9 TIGR00436 era GTP-binding prot 99.7 7.3E-16 1.6E-20 126.7 15.0 148 25-178 2-163 (270)
10 PRK15494 era GTPase Era; Provi 99.7 2.5E-16 5.5E-21 133.1 12.4 164 7-178 31-215 (339)
11 PRK00093 GTP-binding protein D 99.7 1.1E-15 2.5E-20 133.6 15.3 162 23-187 173-352 (435)
12 TIGR03594 GTPase_EngA ribosome 99.7 3.2E-15 6.8E-20 130.6 15.2 161 24-187 173-352 (429)
13 COG2262 HflX GTPases [General 99.6 6.9E-16 1.5E-20 129.2 9.8 153 23-181 192-358 (411)
14 PRK03003 GTP-binding protein D 99.6 4.2E-15 9.2E-20 131.1 15.0 169 23-196 211-400 (472)
15 PRK00089 era GTPase Era; Revie 99.6 6.4E-15 1.4E-19 122.4 15.1 149 24-178 6-170 (292)
16 PRK12298 obgE GTPase CgtA; Rev 99.6 1E-14 2.2E-19 125.1 15.1 148 25-180 161-334 (390)
17 KOG1191 Mitochondrial GTPase [ 99.6 1.6E-15 3.4E-20 129.1 9.0 159 18-182 265-453 (531)
18 PRK12299 obgE GTPase CgtA; Rev 99.6 9.6E-15 2.1E-19 122.9 13.6 149 24-179 159-328 (335)
19 PF01926 MMR_HSR1: 50S ribosom 99.6 1E-14 2.2E-19 104.7 11.9 90 25-118 1-90 (116)
20 COG0218 Predicted GTPase [Gene 99.6 3.4E-14 7.5E-19 108.9 15.3 150 23-179 24-197 (200)
21 KOG1489 Predicted GTP-binding 99.6 8E-16 1.7E-20 124.5 6.7 154 14-176 189-364 (366)
22 TIGR03594 GTPase_EngA ribosome 99.6 3.6E-15 7.7E-20 130.3 10.8 148 25-178 1-159 (429)
23 TIGR03156 GTP_HflX GTP-binding 99.6 4.4E-15 9.6E-20 125.9 10.5 147 24-176 190-349 (351)
24 COG0488 Uup ATPase components 99.6 9.3E-15 2E-19 129.2 12.8 72 1-86 9-80 (530)
25 cd04164 trmE TrmE (MnmE, ThdF, 99.6 8.5E-15 1.8E-19 109.8 10.9 148 24-177 2-155 (157)
26 PRK09518 bifunctional cytidyla 99.6 2.3E-14 5.1E-19 132.0 15.8 166 24-194 451-637 (712)
27 PRK12296 obgE GTPase CgtA; Rev 99.6 4.2E-15 9.1E-20 130.0 9.8 159 14-182 152-343 (500)
28 PRK03003 GTP-binding protein D 99.6 8.3E-15 1.8E-19 129.2 11.1 149 24-178 39-198 (472)
29 PRK12297 obgE GTPase CgtA; Rev 99.6 1.1E-14 2.3E-19 125.8 11.3 149 25-180 160-328 (424)
30 PRK09554 feoB ferrous iron tra 99.6 1.1E-14 2.3E-19 134.3 12.0 149 24-178 4-167 (772)
31 PRK05291 trmE tRNA modificatio 99.6 2.6E-14 5.6E-19 125.1 13.3 154 19-180 213-371 (449)
32 cd01895 EngA2 EngA2 subfamily. 99.6 4.9E-14 1.1E-18 107.3 12.5 152 23-177 2-173 (174)
33 PRK11058 GTPase HflX; Provisio 99.6 1.3E-14 2.9E-19 125.7 10.0 150 24-179 198-362 (426)
34 cd01894 EngA1 EngA1 subfamily. 99.6 1.1E-14 2.5E-19 109.2 7.6 144 27-176 1-155 (157)
35 PRK00093 GTP-binding protein D 99.6 1.8E-14 3.9E-19 126.1 9.9 147 24-176 2-159 (435)
36 COG1116 TauB ABC-type nitrate/ 99.5 5.2E-15 1.1E-19 117.0 4.6 85 1-93 9-93 (248)
37 TIGR02729 Obg_CgtA Obg family 99.5 2.5E-13 5.4E-18 114.3 14.6 147 24-177 158-327 (329)
38 PRK09518 bifunctional cytidyla 99.5 9.1E-14 2E-18 128.2 12.8 149 24-178 276-435 (712)
39 cd04163 Era Era subfamily. Er 99.5 4.7E-13 1E-17 100.9 14.5 147 24-176 4-166 (168)
40 TIGR00450 mnmE_trmE_thdF tRNA 99.5 3.2E-13 6.9E-18 117.8 15.1 153 19-180 201-361 (442)
41 COG0536 Obg Predicted GTPase [ 99.5 1.6E-13 3.5E-18 112.5 11.6 150 25-182 161-336 (369)
42 cd01878 HflX HflX subfamily. 99.5 1.4E-13 3.1E-18 108.4 9.8 147 24-176 42-202 (204)
43 COG1084 Predicted GTPase [Gene 99.5 2.6E-13 5.7E-18 110.7 10.5 99 24-127 169-269 (346)
44 cd01898 Obg Obg subfamily. Th 99.5 7.2E-13 1.6E-17 100.9 12.5 144 25-176 2-168 (170)
45 COG1131 CcmA ABC-type multidru 99.5 3.8E-14 8.2E-19 117.5 5.3 86 1-92 10-98 (293)
46 cd01879 FeoB Ferrous iron tran 99.5 3E-13 6.5E-18 101.7 9.7 143 28-177 1-155 (158)
47 TIGR00991 3a0901s02IAP34 GTP-b 99.5 2.4E-13 5.1E-18 112.0 9.5 99 24-126 39-138 (313)
48 PRK15467 ethanolamine utilizat 99.5 8.1E-14 1.8E-18 105.5 6.1 133 24-178 2-146 (158)
49 COG1126 GlnQ ABC-type polar am 99.5 1.5E-14 3.2E-19 111.8 1.9 88 1-94 8-99 (240)
50 PF10662 PduV-EutP: Ethanolami 99.5 4.4E-13 9.5E-18 98.4 9.3 129 24-175 2-142 (143)
51 COG4152 ABC-type uncharacteriz 99.5 7.1E-14 1.5E-18 109.8 5.4 84 1-91 8-91 (300)
52 cd04171 SelB SelB subfamily. 99.4 3.6E-12 7.9E-17 96.3 13.8 139 25-175 2-162 (164)
53 KOG1423 Ras-like GTPase ERA [C 99.4 6.6E-13 1.4E-17 107.3 9.7 93 24-118 73-166 (379)
54 cd01900 YchF YchF subfamily. 99.4 7.6E-13 1.6E-17 108.2 10.1 87 26-118 1-103 (274)
55 cd01881 Obg_like The Obg-like 99.4 2.4E-13 5.2E-18 104.0 6.4 141 28-176 1-174 (176)
56 cd01853 Toc34_like Toc34-like 99.4 3.1E-12 6.7E-17 103.6 13.1 99 24-125 32-133 (249)
57 TIGR03598 GTPase_YsxC ribosome 99.4 1.6E-12 3.4E-17 100.4 10.9 99 23-127 18-120 (179)
58 cd01897 NOG NOG1 is a nucleola 99.4 4.4E-12 9.5E-17 96.5 13.2 147 24-177 1-166 (168)
59 cd01896 DRG The developmentall 99.4 7.8E-13 1.7E-17 106.3 9.3 88 25-119 2-89 (233)
60 COG1163 DRG Predicted GTPase [ 99.4 1.5E-13 3.3E-18 111.8 5.1 101 14-121 54-154 (365)
61 PRK04213 GTP-binding protein; 99.4 3.3E-12 7.1E-17 100.3 12.0 147 23-178 9-191 (201)
62 TIGR00993 3a0901s04IAP86 chlor 99.4 7.9E-13 1.7E-17 117.4 9.3 92 24-118 119-212 (763)
63 PRK00454 engB GTP-binding prot 99.4 1.5E-11 3.2E-16 96.1 15.6 148 24-177 25-192 (196)
64 COG0411 LivG ABC-type branched 99.4 1.8E-14 3.9E-19 113.3 -1.0 88 1-94 10-101 (250)
65 PTZ00258 GTP-binding protein; 99.4 2.1E-12 4.6E-17 110.1 11.2 89 24-118 22-126 (390)
66 COG3839 MalK ABC-type sugar tr 99.4 2.1E-13 4.7E-18 113.6 5.0 90 1-96 9-99 (338)
67 PRK09601 GTP-binding protein Y 99.4 2.2E-12 4.8E-17 108.8 11.0 89 24-118 3-107 (364)
68 cd04160 Arfrp1 Arfrp1 subfamil 99.4 8.9E-13 1.9E-17 100.2 7.5 138 25-175 1-165 (167)
69 cd01887 IF2_eIF5B IF2/eIF5B (i 99.4 2.4E-12 5.3E-17 97.7 9.0 139 25-177 2-164 (168)
70 cd04166 CysN_ATPS CysN_ATPS su 99.4 4.2E-13 9.1E-18 106.2 4.9 135 25-171 1-186 (208)
71 COG3842 PotA ABC-type spermidi 99.4 4.4E-13 9.5E-18 112.3 4.7 90 1-96 11-101 (352)
72 cd04154 Arl2 Arl2 subfamily. 99.4 2.3E-12 5E-17 98.8 8.4 134 24-175 15-171 (173)
73 cd01884 EF_Tu EF-Tu subfamily. 99.4 1.4E-12 3E-17 102.1 6.9 133 24-168 3-172 (195)
74 TIGR00437 feoB ferrous iron tr 99.4 3.2E-11 6.9E-16 108.9 16.3 140 30-177 1-153 (591)
75 cd03230 ABC_DR_subfamily_A Thi 99.4 2.7E-12 5.9E-17 98.6 8.0 118 2-125 7-130 (173)
76 PF00009 GTP_EFTU: Elongation 99.4 8.4E-12 1.8E-16 97.1 10.7 142 24-177 4-185 (188)
77 cd03229 ABC_Class3 This class 99.4 1.7E-12 3.7E-17 100.2 6.6 118 2-125 7-135 (178)
78 cd00879 Sar1 Sar1 subfamily. 99.3 2.5E-12 5.4E-17 100.0 7.5 146 10-176 9-188 (190)
79 COG1125 OpuBA ABC-type proline 99.3 1.9E-13 4.1E-18 108.1 1.1 86 1-93 7-96 (309)
80 cd04159 Arl10_like Arl10-like 99.3 4E-12 8.6E-17 95.1 8.2 134 26-176 2-158 (159)
81 cd04155 Arl3 Arl3 subfamily. 99.3 3.9E-12 8.5E-17 97.3 8.0 135 23-175 14-171 (173)
82 cd00881 GTP_translation_factor 99.3 1.1E-11 2.4E-16 95.8 10.5 140 25-177 1-185 (189)
83 COG1120 FepC ABC-type cobalami 99.3 3.3E-13 7.1E-18 108.5 2.0 47 1-49 8-54 (258)
84 PRK13536 nodulation factor exp 99.3 6.4E-13 1.4E-17 112.4 3.9 87 1-93 47-135 (340)
85 KOG0410 Predicted GTP binding 99.3 2.7E-12 5.8E-17 104.5 7.2 150 24-178 179-340 (410)
86 cd01888 eIF2_gamma eIF2-gamma 99.3 4.7E-12 1E-16 99.8 8.5 140 25-176 2-196 (203)
87 cd04124 RabL2 RabL2 subfamily. 99.3 1.5E-11 3.3E-16 93.1 11.0 138 25-178 2-157 (161)
88 COG0410 LivF ABC-type branched 99.3 3.8E-13 8.2E-18 105.1 2.0 87 1-93 9-99 (237)
89 cd04157 Arl6 Arl6 subfamily. 99.3 4.1E-12 9E-17 95.9 7.6 135 25-175 1-160 (162)
90 cd01861 Rab6 Rab6 subfamily. 99.3 1E-11 2.2E-16 93.7 9.5 137 25-176 2-159 (161)
91 COG3596 Predicted GTPase [Gene 99.3 1.4E-11 3E-16 98.6 10.6 94 22-121 38-131 (296)
92 PRK13537 nodulation ABC transp 99.3 8.6E-13 1.9E-17 110.3 3.9 87 1-93 13-101 (306)
93 cd04158 ARD1 ARD1 subfamily. 99.3 7.8E-12 1.7E-16 95.5 8.8 135 25-177 1-159 (169)
94 cd01889 SelB_euk SelB subfamil 99.3 2.1E-11 4.5E-16 95.2 11.1 140 25-177 2-184 (192)
95 TIGR02528 EutP ethanolamine ut 99.3 2.3E-12 4.9E-17 95.5 5.4 127 25-174 2-140 (142)
96 cd03261 ABC_Org_Solvent_Resist 99.3 9E-13 2E-17 106.2 3.3 85 2-92 7-97 (235)
97 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.3 1.4E-11 3.1E-16 95.4 9.7 140 24-178 4-169 (183)
98 COG1121 ZnuC ABC-type Mn/Zn tr 99.3 1.3E-12 2.9E-17 104.5 4.0 74 2-81 11-84 (254)
99 cd01890 LepA LepA subfamily. 99.3 3.9E-12 8.5E-17 97.8 6.4 141 25-177 2-175 (179)
100 cd03293 ABC_NrtD_SsuB_transpor 99.3 2E-12 4.4E-17 103.1 4.7 83 2-92 7-93 (220)
101 cd03269 ABC_putative_ATPase Th 99.3 9.4E-13 2E-17 104.2 2.8 83 2-91 7-89 (210)
102 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.3 9.7E-12 2.1E-16 95.5 8.3 134 24-175 16-172 (174)
103 COG1136 SalX ABC-type antimicr 99.3 2.2E-12 4.7E-17 101.8 4.5 81 8-94 18-105 (226)
104 cd03224 ABC_TM1139_LivF_branch 99.3 2.2E-12 4.7E-17 103.0 4.5 85 1-91 6-94 (222)
105 cd04156 ARLTS1 ARLTS1 subfamil 99.3 8.2E-12 1.8E-16 94.2 7.5 134 25-175 1-158 (160)
106 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.3 2E-12 4.2E-17 103.0 4.2 84 2-91 7-101 (218)
107 cd03259 ABC_Carb_Solutes_like 99.3 2E-12 4.4E-17 102.6 4.3 86 1-92 6-92 (213)
108 cd04138 H_N_K_Ras_like H-Ras/N 99.3 1.8E-11 3.8E-16 92.2 9.2 137 24-176 2-159 (162)
109 cd04145 M_R_Ras_like M-Ras/R-R 99.3 1.7E-11 3.7E-16 92.7 9.2 138 24-177 3-162 (164)
110 COG1127 Ttg2A ABC-type transpo 99.3 1.5E-12 3.3E-17 102.2 3.3 92 1-98 14-111 (263)
111 PRK13543 cytochrome c biogenes 99.3 2.8E-12 6.1E-17 101.9 4.9 82 2-89 18-99 (214)
112 COG4525 TauB ABC-type taurine 99.3 4.4E-12 9.6E-17 96.8 5.6 85 2-94 10-96 (259)
113 cd03213 ABCG_EPDR ABCG transpo 99.3 8.4E-12 1.8E-16 97.7 7.4 85 2-92 10-102 (194)
114 smart00175 RAB Rab subfamily o 99.3 1.4E-11 3.1E-16 93.1 8.5 138 25-177 2-160 (164)
115 TIGR01288 nodI ATP-binding ABC 99.3 2.5E-12 5.3E-17 107.5 4.4 87 1-93 10-98 (303)
116 PRK11248 tauB taurine transpor 99.3 3.3E-12 7.2E-17 104.1 4.8 83 2-92 8-90 (255)
117 cd03265 ABC_DrrA DrrA is the A 99.3 2.2E-12 4.8E-17 102.8 3.7 82 2-90 7-91 (220)
118 cd00878 Arf_Arl Arf (ADP-ribos 99.3 2.1E-11 4.5E-16 91.8 8.8 134 25-176 1-157 (158)
119 cd01866 Rab2 Rab2 subfamily. 99.3 2E-11 4.2E-16 93.2 8.7 140 24-177 5-164 (168)
120 cd03263 ABC_subfamily_A The AB 99.3 3.3E-12 7.2E-17 101.8 4.6 85 2-92 7-95 (220)
121 cd03296 ABC_CysA_sulfate_impor 99.3 2.9E-12 6.4E-17 103.4 4.3 84 2-91 9-93 (239)
122 smart00178 SAR Sar1p-like memb 99.3 1.8E-11 3.8E-16 95.0 8.4 135 24-176 18-182 (184)
123 cd04142 RRP22 RRP22 subfamily. 99.3 3E-11 6.5E-16 94.8 9.7 148 25-179 2-174 (198)
124 PRK11247 ssuB aliphatic sulfon 99.3 3E-12 6.6E-17 104.4 4.2 83 2-92 19-101 (257)
125 COG3638 ABC-type phosphate/pho 99.3 1.4E-12 3E-17 102.2 2.0 87 1-93 9-102 (258)
126 cd04119 RJL RJL (RabJ-Like) su 99.3 2.1E-11 4.6E-16 92.3 8.5 139 25-177 2-165 (168)
127 cd01865 Rab3 Rab3 subfamily. 99.3 2.6E-11 5.6E-16 92.2 9.0 140 24-177 2-161 (165)
128 cd03262 ABC_HisP_GlnQ_permease 99.3 2.4E-12 5.1E-17 102.1 3.3 84 2-91 7-95 (213)
129 cd03218 ABC_YhbG The ABC trans 99.3 4.3E-12 9.2E-17 102.0 4.8 85 2-92 7-95 (232)
130 TIGR01188 drrA daunorubicin re 99.3 3E-12 6.5E-17 106.9 4.1 85 3-93 1-87 (302)
131 cd03258 ABC_MetN_methionine_tr 99.3 4.9E-12 1.1E-16 101.7 5.1 86 1-92 7-102 (233)
132 cd04151 Arl1 Arl1 subfamily. 99.3 1.8E-11 3.9E-16 92.3 7.9 133 25-175 1-156 (158)
133 TIGR02673 FtsE cell division A 99.3 3.9E-12 8.4E-17 101.0 4.4 85 2-92 8-99 (214)
134 TIGR01186 proV glycine betaine 99.3 4.7E-12 1E-16 107.8 5.1 85 3-93 1-92 (363)
135 TIGR03410 urea_trans_UrtE urea 99.3 3.4E-12 7.5E-17 102.4 4.1 84 2-91 7-94 (230)
136 cd01876 YihA_EngB The YihA (En 99.3 2.3E-10 5.1E-15 86.3 14.0 144 26-176 2-168 (170)
137 cd03266 ABC_NatA_sodium_export 99.3 4.5E-12 9.8E-17 100.9 4.7 85 2-92 8-98 (218)
138 cd03294 ABC_Pro_Gly_Bertaine T 99.3 6.1E-12 1.3E-16 103.4 5.5 85 2-92 31-122 (269)
139 cd01868 Rab11_like Rab11-like. 99.3 2.3E-11 5.1E-16 92.2 8.4 138 24-176 4-162 (165)
140 cd01863 Rab18 Rab18 subfamily. 99.3 5.9E-11 1.3E-15 89.6 10.5 138 25-176 2-159 (161)
141 cd04113 Rab4 Rab4 subfamily. 99.3 2.4E-11 5.3E-16 91.8 8.4 138 25-176 2-159 (161)
142 cd03301 ABC_MalK_N The N-termi 99.3 4.3E-12 9.4E-17 100.7 4.4 84 2-91 7-91 (213)
143 cd01867 Rab8_Rab10_Rab13_like 99.3 4.9E-11 1.1E-15 90.8 10.1 140 24-178 4-164 (167)
144 cd00154 Rab Rab family. Rab G 99.3 1.6E-11 3.5E-16 91.7 7.2 135 25-175 2-158 (159)
145 cd00880 Era_like Era (E. coli 99.3 1.6E-10 3.4E-15 86.1 12.6 143 28-176 1-161 (163)
146 cd01864 Rab19 Rab19 subfamily. 99.3 2.6E-11 5.7E-16 92.0 8.4 138 24-176 4-163 (165)
147 cd03231 ABC_CcmA_heme_exporter 99.3 4.7E-12 1E-16 99.6 4.3 83 2-90 7-91 (201)
148 TIGR03522 GldA_ABC_ATP gliding 99.3 2.9E-12 6.3E-17 106.9 3.1 87 1-93 8-96 (301)
149 PRK11432 fbpC ferric transport 99.3 3E-12 6.5E-17 108.7 3.2 88 1-94 12-100 (351)
150 cd03219 ABC_Mj1267_LivG_branch 99.3 5.3E-12 1.2E-16 101.7 4.5 85 2-92 7-95 (236)
151 COG1118 CysA ABC-type sulfate/ 99.2 5.6E-12 1.2E-16 102.3 4.5 87 2-94 9-99 (345)
152 cd01862 Rab7 Rab7 subfamily. 99.2 3.8E-11 8.3E-16 91.5 9.0 139 25-178 2-166 (172)
153 TIGR02315 ABC_phnC phosphonate 99.2 5.6E-12 1.2E-16 102.0 4.5 83 1-89 7-96 (243)
154 cd03256 ABC_PhnC_transporter A 99.2 3.6E-12 7.8E-17 103.0 3.4 85 2-92 7-98 (241)
155 cd04149 Arf6 Arf6 subfamily. 99.2 2.9E-11 6.2E-16 92.4 8.2 134 24-175 10-166 (168)
156 PRK10512 selenocysteinyl-tRNA- 99.2 3.3E-11 7.2E-16 109.1 9.7 142 25-177 2-164 (614)
157 PRK09602 translation-associate 99.2 7.5E-11 1.6E-15 101.5 11.4 89 24-118 2-113 (396)
158 PF00735 Septin: Septin; Inte 99.2 1.6E-10 3.5E-15 95.1 12.8 143 23-182 4-175 (281)
159 PRK11264 putative amino-acid A 99.2 5.7E-12 1.2E-16 102.4 4.2 86 2-93 10-106 (250)
160 cd03257 ABC_NikE_OppD_transpor 99.2 9.1E-12 2E-16 99.8 5.3 82 2-89 8-101 (228)
161 cd04122 Rab14 Rab14 subfamily. 99.2 4.3E-11 9.4E-16 91.0 8.7 136 24-176 3-161 (166)
162 PRK10895 lipopolysaccharide AB 99.2 4.6E-12 1E-16 102.4 3.4 84 1-90 9-96 (241)
163 cd03216 ABC_Carb_Monos_I This 99.2 1.9E-11 4.2E-16 93.0 6.6 46 2-49 7-52 (163)
164 cd03222 ABC_RNaseL_inhibitor T 99.2 2.8E-11 6E-16 93.1 7.5 45 1-48 6-50 (177)
165 COG5019 CDC3 Septin family pro 99.2 2E-10 4.3E-15 95.5 12.9 147 18-181 18-194 (373)
166 PRK11650 ugpC glycerol-3-phosp 99.2 4.2E-12 9E-17 108.1 3.2 87 2-94 10-98 (356)
167 TIGR03608 L_ocin_972_ABC putat 99.2 6.9E-12 1.5E-16 99.0 4.2 84 2-91 5-95 (206)
168 cd04127 Rab27A Rab27a subfamil 99.2 1.1E-10 2.3E-15 89.9 10.7 140 24-177 5-175 (180)
169 cd03295 ABC_OpuCA_Osmoprotecti 99.2 7E-12 1.5E-16 101.4 4.2 86 2-93 7-96 (242)
170 PRK13540 cytochrome c biogenes 99.2 4.3E-12 9.4E-17 99.7 2.9 85 2-92 8-94 (200)
171 cd03235 ABC_Metallic_Cations A 99.2 5.2E-12 1.1E-16 100.2 3.3 75 1-83 5-79 (213)
172 COG1134 TagH ABC-type polysacc 99.2 8.9E-12 1.9E-16 98.3 4.5 50 5-60 37-86 (249)
173 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.2 2E-10 4.3E-15 87.2 11.9 139 24-177 3-162 (166)
174 TIGR03740 galliderm_ABC gallid 99.2 9.3E-12 2E-16 99.5 4.6 83 2-91 7-89 (223)
175 PRK09493 glnQ glutamine ABC tr 99.2 5.9E-12 1.3E-16 101.7 3.5 85 2-92 8-97 (240)
176 PRK13539 cytochrome c biogenes 99.2 5.7E-12 1.2E-16 99.6 3.3 82 2-89 9-90 (207)
177 TIGR03265 PhnT2 putative 2-ami 99.2 4.5E-12 9.8E-17 107.8 2.8 88 1-94 10-98 (353)
178 TIGR03411 urea_trans_UrtD urea 99.2 9.2E-12 2E-16 100.7 4.5 86 1-92 8-97 (242)
179 TIGR01189 ccmA heme ABC export 99.2 7.3E-12 1.6E-16 98.3 3.7 84 2-91 7-92 (198)
180 cd03226 ABC_cobalt_CbiO_domain 99.2 6.4E-12 1.4E-16 99.1 3.3 75 2-82 6-81 (205)
181 PRK13538 cytochrome c biogenes 99.2 7.3E-12 1.6E-16 98.8 3.6 84 2-91 8-93 (204)
182 PRK10908 cell division protein 99.2 9.2E-12 2E-16 99.4 4.2 82 2-89 8-96 (222)
183 cd03292 ABC_FtsE_transporter F 99.2 7.1E-12 1.5E-16 99.4 3.5 85 2-92 7-98 (214)
184 KOG2655 Septin family protein 99.2 2E-10 4.4E-15 96.0 12.2 150 16-181 14-190 (366)
185 cd03228 ABCC_MRP_Like The MRP 99.2 1.6E-11 3.6E-16 94.1 5.4 116 2-125 7-131 (171)
186 TIGR00487 IF-2 translation ini 99.2 5.8E-11 1.3E-15 106.8 9.7 138 24-175 88-246 (587)
187 PRK11831 putative ABC transpor 99.2 9.2E-12 2E-16 102.3 4.2 86 2-93 14-105 (269)
188 cd04132 Rho4_like Rho4-like su 99.2 5.3E-10 1.2E-14 86.6 13.9 138 25-178 2-166 (187)
189 cd03246 ABCC_Protease_Secretio 99.2 3.4E-11 7.4E-16 92.5 7.1 117 2-125 7-131 (173)
190 cd01860 Rab5_related Rab5-rela 99.2 1.3E-10 2.8E-15 87.8 10.2 140 24-177 2-161 (163)
191 PRK10851 sulfate/thiosulfate t 99.2 6.4E-12 1.4E-16 106.9 3.2 86 2-93 9-95 (353)
192 cd03268 ABC_BcrA_bacitracin_re 99.2 6.4E-12 1.4E-16 99.3 3.0 84 2-91 7-91 (208)
193 TIGR03005 ectoine_ehuA ectoine 99.2 9.6E-12 2.1E-16 101.2 4.1 85 2-92 7-107 (252)
194 TIGR00960 3a0501s02 Type II (G 99.2 6.1E-12 1.3E-16 100.0 2.8 85 2-92 8-100 (216)
195 cd01858 NGP_1 NGP-1. Autoanti 99.2 3.5E-11 7.5E-16 91.0 6.8 55 24-83 103-157 (157)
196 cd04139 RalA_RalB RalA/RalB su 99.2 7.6E-11 1.6E-15 89.0 8.7 140 24-178 1-161 (164)
197 PRK11124 artP arginine transpo 99.2 6.1E-12 1.3E-16 101.8 2.8 85 2-92 9-102 (242)
198 cd04175 Rap1 Rap1 subgroup. T 99.2 7.7E-11 1.7E-15 89.3 8.7 137 24-176 2-160 (164)
199 COG1135 AbcC ABC-type metal io 99.2 1.1E-11 2.4E-16 100.7 4.2 87 1-93 7-104 (339)
200 PRK11000 maltose/maltodextrin 99.2 7.7E-12 1.7E-16 107.1 3.6 86 2-93 10-96 (369)
201 cd03260 ABC_PstB_phosphate_tra 99.2 4.6E-12 1E-16 101.5 2.0 44 2-47 7-50 (227)
202 smart00173 RAS Ras subfamily o 99.2 2.7E-10 5.9E-15 86.2 11.6 137 25-177 2-160 (164)
203 PRK05306 infB translation init 99.2 5.8E-11 1.3E-15 109.5 9.3 138 24-176 291-449 (787)
204 PRK10247 putative ABC transpor 99.2 1.2E-11 2.5E-16 99.1 4.2 79 1-85 13-94 (225)
205 cd04109 Rab28 Rab28 subfamily. 99.2 8.7E-11 1.9E-15 93.3 9.2 142 25-179 2-166 (215)
206 PRK11629 lolD lipoprotein tran 99.2 1.2E-11 2.6E-16 99.5 4.3 86 2-93 12-108 (233)
207 TIGR02211 LolD_lipo_ex lipopro 99.2 1.3E-11 2.8E-16 98.5 4.4 85 2-92 8-103 (221)
208 CHL00071 tufA elongation facto 99.2 6.8E-11 1.5E-15 102.7 9.2 93 23-127 12-118 (409)
209 TIGR00475 selB selenocysteine- 99.2 4.5E-10 9.7E-15 101.4 14.7 141 25-177 2-164 (581)
210 COG1137 YhbG ABC-type (unclass 99.2 4.8E-13 1E-17 102.3 -3.7 86 1-93 10-100 (243)
211 cd01899 Ygr210 Ygr210 subfamil 99.2 1.6E-10 3.4E-15 96.8 10.8 87 26-118 1-110 (318)
212 smart00177 ARF ARF-like small 99.2 1E-10 2.2E-15 90.0 9.0 135 24-176 14-171 (175)
213 cd03250 ABCC_MRP_domain1 Domai 99.2 1.9E-11 4.1E-16 96.3 5.1 68 2-85 7-79 (204)
214 PRK10584 putative ABC transpor 99.2 1.5E-11 3.2E-16 98.6 4.5 85 2-92 13-108 (228)
215 TIGR01978 sufC FeS assembly AT 99.2 1.3E-11 2.7E-16 99.9 4.1 83 2-90 7-95 (243)
216 TIGR03864 PQQ_ABC_ATP ABC tran 99.2 1.3E-11 2.7E-16 99.6 4.1 84 2-91 8-93 (236)
217 PRK13548 hmuV hemin importer A 99.2 1.4E-11 2.9E-16 100.7 4.3 82 2-89 9-93 (258)
218 cd04123 Rab21 Rab21 subfamily. 99.2 7.8E-11 1.7E-15 88.7 8.2 138 25-176 2-159 (162)
219 PRK11300 livG leucine/isoleuci 99.2 9.6E-12 2.1E-16 101.4 3.3 85 2-92 12-100 (255)
220 cd04106 Rab23_lke Rab23-like s 99.2 1.7E-10 3.6E-15 87.1 9.9 138 25-176 2-160 (162)
221 cd03232 ABC_PDR_domain2 The pl 99.2 4.2E-11 9.2E-16 93.5 6.8 87 2-93 10-100 (192)
222 CHL00189 infB translation init 99.2 7.9E-11 1.7E-15 107.8 9.5 139 24-176 245-407 (742)
223 cd04104 p47_IIGP_like p47 (47- 99.2 2.1E-10 4.5E-15 90.0 10.7 95 23-127 1-98 (197)
224 COG1129 MglA ABC-type sugar tr 99.2 1.5E-11 3.3E-16 106.9 4.6 86 1-92 14-103 (500)
225 PRK14246 phosphate ABC transpo 99.2 2.5E-11 5.5E-16 99.1 5.7 85 2-92 17-110 (257)
226 PRK10619 histidine/lysine/argi 99.2 1.3E-11 2.9E-16 100.7 4.1 86 2-93 12-113 (257)
227 TIGR00972 3a0107s01c2 phosphat 99.2 1.1E-11 2.4E-16 100.6 3.5 88 2-92 8-101 (247)
228 cd04112 Rab26 Rab26 subfamily. 99.2 1.3E-10 2.9E-15 90.5 9.5 140 25-178 2-162 (191)
229 TIGR03719 ABC_ABC_ChvD ATP-bin 99.2 2.4E-11 5.1E-16 109.5 5.9 79 1-93 10-89 (552)
230 cd03223 ABCD_peroxisomal_ALDP 99.2 9.9E-11 2.1E-15 89.3 8.4 45 2-48 7-52 (166)
231 cd04150 Arf1_5_like Arf1-Arf5- 99.2 7.2E-11 1.6E-15 89.3 7.5 133 25-175 2-157 (159)
232 cd04137 RheB Rheb (Ras Homolog 99.2 1.8E-10 3.9E-15 88.7 9.9 139 24-178 2-162 (180)
233 PRK11819 putative ABC transpor 99.2 2.3E-11 4.9E-16 109.7 5.5 79 1-93 12-91 (556)
234 cd04144 Ras2 Ras2 subfamily. 99.2 1E-10 2.2E-15 91.1 8.6 138 25-178 1-162 (190)
235 PRK09452 potA putrescine/sperm 99.2 9.8E-12 2.1E-16 106.4 3.0 87 2-94 21-108 (375)
236 PTZ00133 ADP-ribosylation fact 99.2 1.4E-10 3E-15 89.8 9.2 137 24-178 18-177 (182)
237 PRK11614 livF leucine/isoleuci 99.2 1.6E-11 3.5E-16 99.0 4.0 82 2-89 12-97 (237)
238 PRK14267 phosphate ABC transpo 99.2 1.5E-11 3.2E-16 100.1 3.9 88 2-92 11-105 (253)
239 cd04111 Rab39 Rab39 subfamily. 99.2 1.3E-10 2.8E-15 92.1 9.1 142 24-178 3-165 (211)
240 PRK11153 metN DL-methionine tr 99.2 1.5E-11 3.2E-16 104.4 3.9 86 2-93 8-103 (343)
241 TIGR03258 PhnT 2-aminoethylpho 99.2 1.1E-11 2.3E-16 105.8 3.0 90 1-94 11-101 (362)
242 PRK10575 iron-hydroxamate tran 99.2 1.3E-11 2.7E-16 101.3 3.3 82 2-89 18-102 (265)
243 cd03217 ABC_FeS_Assembly ABC-t 99.2 5.9E-11 1.3E-15 93.3 7.0 81 2-88 7-93 (200)
244 cd03300 ABC_PotA_N PotA is an 99.2 2E-11 4.4E-16 98.1 4.3 85 2-92 7-92 (232)
245 PLN00223 ADP-ribosylation fact 99.2 1.8E-10 3.8E-15 89.2 9.4 136 24-177 18-176 (181)
246 cd04136 Rap_like Rap-like subf 99.2 5.2E-10 1.1E-14 84.4 11.8 137 24-176 2-160 (163)
247 TIGR03873 F420-0_ABC_ATP propo 99.2 1.8E-11 3.8E-16 99.9 3.8 82 2-89 8-92 (256)
248 cd01850 CDC_Septin CDC/Septin. 99.2 1.4E-09 3E-14 89.6 15.0 96 21-118 2-125 (276)
249 TIGR00231 small_GTP small GTP- 99.2 3.7E-10 8E-15 84.0 10.7 59 24-85 2-62 (161)
250 PRK10253 iron-enterobactin tra 99.2 1.3E-11 2.7E-16 101.3 2.9 80 2-87 14-96 (265)
251 PRK09536 btuD corrinoid ABC tr 99.2 1.3E-11 2.8E-16 106.4 3.1 83 1-89 9-94 (402)
252 TIGR00968 3a0106s01 sulfate AB 99.2 2.1E-11 4.7E-16 98.3 4.2 84 2-91 7-91 (237)
253 cd04101 RabL4 RabL4 (Rab-like4 99.2 1.5E-10 3.2E-15 87.6 8.6 138 25-177 2-162 (164)
254 PRK13541 cytochrome c biogenes 99.2 1.6E-11 3.4E-16 96.2 3.2 83 2-92 8-90 (195)
255 KOG1547 Septin CDC10 and relat 99.2 6E-10 1.3E-14 87.5 11.8 151 18-182 41-217 (336)
256 cd04114 Rab30 Rab30 subfamily. 99.2 1.4E-10 3E-15 88.2 8.3 137 24-177 8-167 (169)
257 cd01891 TypA_BipA TypA (tyrosi 99.2 2.9E-10 6.2E-15 88.9 10.2 135 24-171 3-174 (194)
258 COG2884 FtsE Predicted ATPase 99.2 3.8E-11 8.2E-16 91.2 4.9 87 1-93 7-100 (223)
259 PRK14272 phosphate ABC transpo 99.2 2.9E-11 6.3E-16 98.4 4.7 89 2-92 11-105 (252)
260 cd03215 ABC_Carb_Monos_II This 99.2 1.3E-10 2.8E-15 90.0 8.1 78 10-93 15-99 (182)
261 PRK14247 phosphate ABC transpo 99.2 2.3E-11 5.1E-16 98.8 4.1 90 2-93 10-103 (250)
262 COG4555 NatA ABC-type Na+ tran 99.2 2.3E-11 5E-16 93.2 3.8 84 1-91 7-94 (245)
263 PRK12317 elongation factor 1-a 99.2 3.9E-11 8.4E-16 104.8 5.7 137 24-172 7-198 (425)
264 cd03264 ABC_drug_resistance_li 99.2 1.4E-11 3E-16 97.6 2.7 83 2-92 7-92 (211)
265 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.2 7.9E-11 1.7E-15 87.8 6.6 45 2-48 7-51 (144)
266 cd04125 RabA_like RabA-like su 99.2 1.6E-10 3.5E-15 89.7 8.6 139 25-178 2-161 (188)
267 PLN03110 Rab GTPase; Provision 99.2 2.7E-10 5.8E-15 90.7 10.0 140 24-178 13-173 (216)
268 PRK11607 potG putrescine trans 99.2 1.6E-11 3.4E-16 105.3 3.1 87 2-94 26-113 (377)
269 PRK11231 fecE iron-dicitrate t 99.2 1.5E-11 3.3E-16 100.2 2.9 80 2-87 9-91 (255)
270 PRK15064 ABC transporter ATP-b 99.2 3.7E-11 8E-16 107.8 5.5 77 1-91 7-83 (530)
271 PRK14250 phosphate ABC transpo 99.2 2.5E-11 5.5E-16 98.1 3.9 78 2-85 10-90 (241)
272 TIGR02314 ABC_MetN D-methionin 99.2 2.5E-11 5.4E-16 102.7 4.0 86 2-93 8-103 (343)
273 cd03225 ABC_cobalt_CbiO_domain 99.1 2.5E-11 5.5E-16 96.1 3.7 75 2-82 6-85 (211)
274 PRK09984 phosphonate/organopho 99.1 2.3E-11 4.9E-16 99.6 3.4 87 2-91 11-105 (262)
275 PRK09544 znuC high-affinity zi 99.1 2.8E-11 6.2E-16 98.4 4.0 45 2-48 11-55 (251)
276 COG0012 Predicted GTPase, prob 99.1 1.2E-09 2.6E-14 91.3 13.6 89 24-118 3-108 (372)
277 PRK14256 phosphate ABC transpo 99.1 3.6E-11 7.8E-16 97.9 4.5 89 2-92 11-105 (252)
278 cd00157 Rho Rho (Ras homology) 99.1 9.4E-10 2E-14 83.7 12.1 137 25-176 2-170 (171)
279 PRK14235 phosphate transporter 99.1 2.2E-11 4.8E-16 100.0 3.1 83 2-86 26-114 (267)
280 PRK14241 phosphate transporter 99.1 2.8E-11 6.2E-16 98.8 3.7 89 2-92 11-105 (258)
281 cd04110 Rab35 Rab35 subfamily. 99.1 1E-09 2.2E-14 86.2 12.4 140 24-178 7-166 (199)
282 PTZ00369 Ras-like protein; Pro 99.1 1.4E-09 3E-14 84.6 13.1 138 24-177 6-165 (189)
283 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.1 3.6E-11 7.8E-16 96.2 4.2 45 2-48 29-73 (224)
284 PRK15056 manganese/iron transp 99.1 2.4E-11 5.1E-16 100.0 3.2 46 2-49 13-59 (272)
285 PRK10762 D-ribose transporter 99.1 3.3E-11 7.1E-16 107.4 4.3 84 1-90 10-97 (501)
286 cd03247 ABCC_cytochrome_bd The 99.1 6.8E-11 1.5E-15 91.2 5.5 78 2-85 7-88 (178)
287 cd03267 ABC_NatA_like Similar 99.1 6.7E-11 1.4E-15 95.4 5.6 45 3-49 29-73 (236)
288 cd04162 Arl9_Arfrp2_like Arl9/ 99.1 2.3E-10 4.9E-15 87.1 8.2 80 26-121 2-81 (164)
289 PLN03118 Rab family protein; P 99.1 9.3E-10 2E-14 87.2 12.0 141 24-179 15-177 (211)
290 cd04107 Rab32_Rab38 Rab38/Rab3 99.1 8.7E-10 1.9E-14 86.6 11.8 138 25-178 2-167 (201)
291 cd04140 ARHI_like ARHI subfami 99.1 9.3E-10 2E-14 83.6 11.4 139 24-176 2-162 (165)
292 TIGR03415 ABC_choXWV_ATP choli 99.1 4.5E-11 9.7E-16 102.3 4.5 86 2-93 31-127 (382)
293 PRK14262 phosphate ABC transpo 99.1 4.4E-11 9.5E-16 97.2 4.3 82 2-85 10-97 (250)
294 cd04177 RSR1 RSR1 subgroup. R 99.1 3.4E-10 7.5E-15 86.2 8.9 138 24-176 2-161 (168)
295 cd00876 Ras Ras family. The R 99.1 2.4E-10 5.2E-15 85.8 8.0 136 25-176 1-158 (160)
296 PRK14249 phosphate ABC transpo 99.1 4.8E-11 1E-15 97.1 4.4 83 2-86 11-99 (251)
297 COG1117 PstB ABC-type phosphat 99.1 4.7E-11 1E-15 92.4 4.0 76 2-85 14-101 (253)
298 cd00877 Ran Ran (Ras-related n 99.1 4E-10 8.8E-15 85.8 9.2 138 25-178 2-158 (166)
299 cd04178 Nucleostemin_like Nucl 99.1 1.4E-10 3E-15 88.9 6.6 55 24-83 118-172 (172)
300 cd04116 Rab9 Rab9 subfamily. 99.1 2.2E-10 4.8E-15 87.3 7.7 139 24-176 6-168 (170)
301 PRK14268 phosphate ABC transpo 99.1 4.6E-11 1E-15 97.6 4.2 88 2-92 19-112 (258)
302 cd04108 Rab36_Rab34 Rab34/Rab3 99.1 4.4E-10 9.5E-15 86.0 9.3 139 25-178 2-164 (170)
303 PRK14240 phosphate transporter 99.1 4.5E-11 9.8E-16 97.2 4.0 82 2-85 10-97 (250)
304 PRK10070 glycine betaine trans 99.1 5E-11 1.1E-15 102.7 4.4 85 3-93 36-127 (400)
305 PRK12736 elongation factor Tu; 99.1 3.3E-10 7.1E-15 97.9 9.5 93 23-127 12-118 (394)
306 PRK14273 phosphate ABC transpo 99.1 4.8E-11 1E-15 97.2 4.0 87 2-91 14-106 (254)
307 cd04115 Rab33B_Rab33A Rab33B/R 99.1 4.6E-10 1E-14 85.7 9.2 140 24-176 3-166 (170)
308 PRK14269 phosphate ABC transpo 99.1 4.5E-11 9.8E-16 96.9 3.8 81 2-85 9-92 (246)
309 COG1124 DppF ABC-type dipeptid 99.1 8.5E-11 1.8E-15 92.7 5.1 56 1-62 9-68 (252)
310 smart00174 RHO Rho (Ras homolo 99.1 7.6E-10 1.6E-14 84.6 10.3 135 26-177 1-170 (174)
311 cd04176 Rap2 Rap2 subgroup. T 99.1 3.4E-10 7.4E-15 85.6 8.3 137 24-176 2-160 (163)
312 cd03298 ABC_ThiQ_thiamine_tran 99.1 5.6E-11 1.2E-15 94.2 4.1 80 2-89 7-87 (211)
313 COG4604 CeuD ABC-type enteroch 99.1 5.4E-11 1.2E-15 91.0 3.7 55 1-61 7-61 (252)
314 PRK09700 D-allose transporter 99.1 4.8E-11 1E-15 106.6 4.1 82 1-88 11-96 (510)
315 PRK14270 phosphate ABC transpo 99.1 5.6E-11 1.2E-15 96.7 4.1 87 2-91 11-103 (251)
316 PRK13547 hmuV hemin importer A 99.1 3.8E-11 8.3E-16 98.7 3.2 46 2-49 8-53 (272)
317 cd03233 ABC_PDR_domain1 The pl 99.1 8.7E-11 1.9E-15 92.5 5.1 84 6-92 18-103 (202)
318 PRK10982 galactose/methyl gala 99.1 5E-11 1.1E-15 106.0 4.2 82 1-88 4-89 (491)
319 PRK13632 cbiO cobalt transport 99.1 4.9E-11 1.1E-15 98.1 3.8 81 2-89 14-101 (271)
320 cd04126 Rab20 Rab20 subfamily. 99.1 9.5E-10 2.1E-14 87.6 10.8 81 25-122 2-82 (220)
321 PRK13549 xylose transporter AT 99.1 5.7E-11 1.2E-15 106.0 4.1 85 1-89 11-99 (506)
322 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.1 1E-09 2.2E-14 84.1 10.6 136 24-176 3-161 (172)
323 PRK13644 cbiO cobalt transport 99.1 6.6E-11 1.4E-15 97.5 4.2 75 2-82 8-87 (274)
324 PRK14271 phosphate ABC transpo 99.1 4.6E-11 1E-15 98.5 3.1 83 1-85 27-114 (276)
325 TIGR02769 nickel_nikE nickel i 99.1 8.2E-11 1.8E-15 96.5 4.6 77 7-89 23-107 (265)
326 cd04147 Ras_dva Ras-dva subfam 99.1 3.7E-10 7.9E-15 88.6 8.0 137 25-177 1-161 (198)
327 PRK00049 elongation factor Tu; 99.1 4.4E-10 9.6E-15 97.2 9.2 92 24-127 13-118 (396)
328 TIGR02142 modC_ABC molybdenum 99.1 7.2E-11 1.6E-15 100.6 4.2 85 1-93 5-96 (354)
329 PRK09866 hypothetical protein; 99.1 4.4E-10 9.5E-15 100.0 9.1 97 73-176 230-350 (741)
330 cd03234 ABCG_White The White s 99.1 1E-10 2.2E-15 93.7 4.8 82 8-92 20-101 (226)
331 TIGR01277 thiQ thiamine ABC tr 99.1 1.3E-10 2.7E-15 92.3 5.2 83 2-92 7-90 (213)
332 PRK14253 phosphate ABC transpo 99.1 6.7E-11 1.4E-15 96.1 3.8 82 2-85 10-96 (249)
333 TIGR02324 CP_lyasePhnL phospho 99.1 6.4E-11 1.4E-15 94.7 3.5 78 8-91 21-109 (224)
334 PRK14274 phosphate ABC transpo 99.1 5.5E-11 1.2E-15 97.2 3.1 83 2-86 19-107 (259)
335 PRK13638 cbiO cobalt transport 99.1 6.5E-11 1.4E-15 97.4 3.6 46 2-49 8-53 (271)
336 PRK15439 autoinducer 2 ABC tra 99.1 7E-11 1.5E-15 105.5 4.0 84 2-91 18-105 (510)
337 PRK14261 phosphate ABC transpo 99.1 7.9E-11 1.7E-15 95.9 4.0 82 2-85 13-100 (253)
338 PRK10744 pstB phosphate transp 99.1 4.8E-11 1E-15 97.6 2.7 82 2-85 20-107 (260)
339 PRK14259 phosphate ABC transpo 99.1 4.7E-11 1E-15 98.1 2.7 45 2-48 20-64 (269)
340 PRK10636 putative ABC transpor 99.1 5.8E-11 1.3E-15 108.5 3.4 47 1-49 7-53 (638)
341 PRK13635 cbiO cobalt transport 99.1 6.8E-11 1.5E-15 97.6 3.5 74 2-81 12-90 (279)
342 COG3845 ABC-type uncharacteriz 99.1 9.8E-11 2.1E-15 100.5 4.4 86 1-92 10-99 (501)
343 PRK11288 araG L-arabinose tran 99.1 7.9E-11 1.7E-15 105.0 4.1 83 1-89 10-96 (501)
344 cd01886 EF-G Elongation factor 99.1 1E-09 2.2E-14 90.1 10.3 106 25-143 1-127 (270)
345 PRK14248 phosphate ABC transpo 99.1 5.5E-11 1.2E-15 97.7 2.8 82 2-85 28-115 (268)
346 cd03369 ABCC_NFT1 Domain 2 of 99.1 7.9E-11 1.7E-15 93.0 3.6 78 2-85 13-95 (207)
347 cd01870 RhoA_like RhoA-like su 99.1 1.4E-09 3.1E-14 83.1 10.5 137 24-176 2-172 (175)
348 PRK15112 antimicrobial peptide 99.1 1.1E-10 2.5E-15 95.7 4.6 69 8-82 26-97 (267)
349 cd04148 RGK RGK subfamily. Th 99.1 6.7E-10 1.4E-14 88.7 8.9 139 25-179 2-163 (221)
350 PRK12735 elongation factor Tu; 99.1 3.5E-09 7.6E-14 91.7 13.9 91 24-126 13-117 (396)
351 cd04168 TetM_like Tet(M)-like 99.1 1E-09 2.2E-14 88.4 10.0 89 25-125 1-105 (237)
352 PRK11144 modC molybdate transp 99.1 9.2E-11 2E-15 99.9 4.0 85 1-93 6-97 (352)
353 PRK14237 phosphate transporter 99.1 7.2E-11 1.6E-15 96.9 3.3 82 2-85 27-114 (267)
354 PLN03108 Rab family protein; P 99.1 3.8E-09 8.3E-14 83.6 13.0 139 24-177 7-166 (210)
355 TIGR01166 cbiO cobalt transpor 99.1 1.3E-10 2.8E-15 90.6 4.5 43 5-49 2-44 (190)
356 TIGR00491 aIF-2 translation in 99.1 3E-09 6.4E-14 95.8 13.6 90 24-126 5-111 (590)
357 cd04118 Rab24 Rab24 subfamily. 99.1 3.8E-09 8.2E-14 82.3 12.6 138 25-178 2-165 (193)
358 cd03214 ABC_Iron-Siderophores_ 99.1 7.5E-11 1.6E-15 91.2 2.9 46 2-49 6-51 (180)
359 PRK14239 phosphate transporter 99.1 8E-11 1.7E-15 95.8 3.2 86 2-91 12-104 (252)
360 cd01893 Miro1 Miro1 subfamily. 99.1 2.5E-09 5.5E-14 81.3 11.3 138 25-177 2-162 (166)
361 COG4559 ABC-type hemin transpo 99.1 1E-10 2.2E-15 90.4 3.5 48 2-51 8-55 (259)
362 TIGR02982 heterocyst_DevA ABC 99.1 7.1E-11 1.5E-15 94.2 2.8 77 8-90 18-100 (220)
363 PRK14255 phosphate ABC transpo 99.1 1.6E-10 3.4E-15 94.1 4.8 82 2-85 12-99 (252)
364 PRK14265 phosphate ABC transpo 99.1 1.1E-10 2.5E-15 96.1 3.9 82 2-85 27-114 (274)
365 PRK10771 thiQ thiamine transpo 99.1 1.5E-10 3.1E-15 93.1 4.5 80 2-89 8-88 (232)
366 PRK14251 phosphate ABC transpo 99.1 7.6E-11 1.6E-15 95.9 2.8 82 2-85 11-98 (251)
367 PRK13647 cbiO cobalt transport 99.1 7E-11 1.5E-15 97.4 2.6 75 2-82 11-89 (274)
368 cd04135 Tc10 TC10 subfamily. 99.1 1.3E-09 2.7E-14 83.4 9.4 135 25-176 2-171 (174)
369 PRK13637 cbiO cobalt transport 99.1 9.2E-11 2E-15 97.3 3.3 75 2-82 9-93 (287)
370 PRK14238 phosphate transporter 99.1 1E-10 2.2E-15 96.2 3.5 82 2-85 31-118 (271)
371 PRK14243 phosphate transporter 99.1 8.6E-11 1.9E-15 96.3 3.0 82 2-85 17-104 (264)
372 PRK14236 phosphate transporter 99.1 1.2E-10 2.6E-15 95.9 3.8 83 2-86 32-120 (272)
373 cd03244 ABCC_MRP_domain2 Domai 99.1 1.2E-10 2.6E-15 92.9 3.7 78 2-85 9-91 (221)
374 PRK14260 phosphate ABC transpo 99.1 1.2E-10 2.5E-15 95.3 3.7 87 2-92 14-107 (259)
375 TIGR02323 CP_lyasePhnK phospho 99.1 1E-10 2.2E-15 95.3 3.3 46 2-49 10-55 (253)
376 PRK15177 Vi polysaccharide exp 99.0 2.1E-10 4.6E-15 91.0 5.0 38 9-48 1-38 (213)
377 PRK13648 cbiO cobalt transport 99.0 1.1E-10 2.4E-15 95.9 3.5 46 2-49 14-61 (269)
378 CHL00131 ycf16 sulfate ABC tra 99.0 2E-10 4.3E-15 93.5 4.8 43 2-46 14-56 (252)
379 PRK14254 phosphate ABC transpo 99.0 1.5E-10 3.3E-15 95.9 4.2 83 2-86 46-134 (285)
380 cd01883 EF1_alpha Eukaryotic e 99.0 1.3E-10 2.8E-15 92.6 3.7 83 25-119 1-112 (219)
381 PRK14252 phosphate ABC transpo 99.0 9.8E-11 2.1E-15 96.0 3.0 83 2-86 23-113 (265)
382 PLN03211 ABC transporter G-25; 99.0 1.7E-10 3.8E-15 105.5 5.0 87 2-93 75-161 (659)
383 PRK14258 phosphate ABC transpo 99.0 1.4E-10 3.1E-15 94.8 4.0 46 2-49 14-59 (261)
384 PRK11819 putative ABC transpor 99.0 1.6E-10 3.4E-15 104.3 4.6 45 2-48 331-375 (556)
385 cd04117 Rab15 Rab15 subfamily. 99.0 6.2E-09 1.4E-13 78.8 12.7 135 25-176 2-159 (161)
386 PRK11701 phnK phosphonate C-P 99.0 1.1E-10 2.3E-15 95.4 3.2 46 2-49 13-58 (258)
387 TIGR02633 xylG D-xylose ABC tr 99.0 1.4E-10 3E-15 103.4 4.1 85 1-89 7-95 (500)
388 cd03299 ABC_ModC_like Archeal 99.0 1.7E-10 3.6E-15 93.0 4.2 85 2-93 7-92 (235)
389 cd03290 ABCC_SUR1_N The SUR do 99.0 2.2E-10 4.7E-15 91.2 4.8 45 3-49 8-53 (218)
390 PRK10419 nikE nickel transport 99.0 2.1E-10 4.6E-15 94.2 4.7 41 7-49 24-64 (268)
391 PF03193 DUF258: Protein of un 99.0 1.9E-10 4.1E-15 86.5 4.0 60 24-87 36-101 (161)
392 PRK13650 cbiO cobalt transport 99.0 9.7E-11 2.1E-15 96.7 2.7 74 2-81 11-90 (279)
393 cd04165 GTPBP1_like GTPBP1-lik 99.0 2.5E-09 5.4E-14 85.5 10.7 96 71-176 82-220 (224)
394 PRK15064 ABC transporter ATP-b 99.0 2E-10 4.4E-15 103.0 4.9 45 2-48 326-370 (530)
395 PLN03071 GTP-binding nuclear p 99.0 1.3E-09 2.9E-14 86.8 9.0 140 23-178 13-171 (219)
396 PRK14263 phosphate ABC transpo 99.0 1.8E-10 3.8E-15 94.3 4.0 82 2-85 15-102 (261)
397 PRK11147 ABC transporter ATPas 99.0 2.2E-10 4.7E-15 104.9 5.0 47 1-49 325-371 (635)
398 cd03297 ABC_ModC_molybdenum_tr 99.0 2.7E-10 5.8E-15 90.5 4.9 83 1-92 6-95 (214)
399 PRK14275 phosphate ABC transpo 99.0 8.6E-11 1.9E-15 97.4 2.1 82 2-85 46-133 (286)
400 cd03245 ABCC_bacteriocin_expor 99.0 1.9E-10 4.2E-15 91.6 3.9 78 2-85 9-91 (220)
401 PRK13646 cbiO cobalt transport 99.0 1.3E-10 2.8E-15 96.4 3.0 74 2-81 9-94 (286)
402 PRK14244 phosphate ABC transpo 99.0 1.4E-10 3E-15 94.4 3.1 83 2-86 12-100 (251)
403 cd01849 YlqF_related_GTPase Yl 99.0 6.9E-10 1.5E-14 83.7 6.6 55 24-83 101-155 (155)
404 PRK13641 cbiO cobalt transport 99.0 1.4E-10 3.1E-15 96.1 3.1 74 2-81 9-94 (287)
405 PRK13640 cbiO cobalt transport 99.0 1.4E-10 3.1E-15 95.9 2.9 46 2-49 12-59 (282)
406 cd03251 ABCC_MsbA MsbA is an e 99.0 1.7E-10 3.7E-15 92.8 3.3 46 2-49 7-54 (234)
407 PRK09563 rbgA GTPase YlqF; Rev 99.0 1.6E-09 3.5E-14 89.8 9.0 60 24-88 122-181 (287)
408 TIGR01393 lepA GTP-binding pro 99.0 1.1E-09 2.4E-14 99.0 8.7 142 24-177 4-178 (595)
409 TIGR01184 ntrCD nitrate transp 99.0 4.6E-10 1E-14 90.1 5.7 74 11-92 1-74 (230)
410 TIGR03719 ABC_ABC_ChvD ATP-bin 99.0 2.7E-10 6E-15 102.6 4.8 45 2-48 329-373 (552)
411 PRK13633 cobalt transporter AT 99.0 2.3E-10 4.9E-15 94.6 3.8 69 8-82 23-95 (280)
412 TIGR00092 GTP-binding protein 99.0 2.1E-09 4.6E-14 90.9 9.6 90 24-118 3-108 (368)
413 PRK13631 cbiO cobalt transport 99.0 2.5E-10 5.5E-15 95.9 4.0 40 8-49 39-78 (320)
414 PRK10418 nikD nickel transport 99.0 4.1E-10 8.8E-15 91.8 5.1 78 2-82 11-89 (254)
415 PRK14266 phosphate ABC transpo 99.0 2.1E-10 4.6E-15 93.2 3.4 82 2-85 10-97 (250)
416 cd03289 ABCC_CFTR2 The CFTR su 99.0 7.6E-11 1.6E-15 97.0 0.7 76 2-85 9-90 (275)
417 PRK11147 ABC transporter ATPas 99.0 1.7E-10 3.7E-15 105.5 3.1 47 1-49 9-55 (635)
418 cd04128 Spg1 Spg1p. Spg1p (se 99.0 8.5E-09 1.8E-13 79.8 12.2 136 25-178 2-165 (182)
419 cd01874 Cdc42 Cdc42 subfamily. 99.0 4.1E-09 9E-14 81.0 10.3 136 24-176 2-172 (175)
420 PRK13546 teichoic acids export 99.0 5.2E-10 1.1E-14 91.6 5.6 41 6-48 35-75 (264)
421 PRK13652 cbiO cobalt transport 99.0 1.9E-10 4.2E-15 94.9 3.0 46 2-49 10-56 (277)
422 cd03254 ABCC_Glucan_exporter_l 99.0 2.6E-10 5.6E-15 91.4 3.6 46 2-49 9-55 (229)
423 cd03288 ABCC_SUR2 The SUR doma 99.0 2.2E-10 4.8E-15 93.5 3.2 78 2-85 26-108 (257)
424 PRK14242 phosphate transporter 99.0 1.7E-10 3.7E-15 93.9 2.4 82 2-85 13-100 (253)
425 COG4619 ABC-type uncharacteriz 99.0 5E-11 1.1E-15 89.0 -0.8 74 6-85 14-90 (223)
426 cd03291 ABCC_CFTR1 The CFTR su 99.0 6.4E-10 1.4E-14 91.9 5.7 63 7-85 49-111 (282)
427 COG1122 CbiO ABC-type cobalt t 99.0 3.6E-10 7.9E-15 90.5 4.0 74 3-82 11-89 (235)
428 cd04129 Rho2 Rho2 subfamily. 99.0 3.6E-09 7.9E-14 82.1 9.6 137 24-177 2-171 (187)
429 PRK10938 putative molybdenum t 99.0 2.6E-10 5.7E-15 101.4 3.5 47 1-49 9-55 (490)
430 cd04121 Rab40 Rab40 subfamily. 99.0 1.2E-08 2.6E-13 79.5 12.4 139 24-177 7-165 (189)
431 cd01855 YqeH YqeH. YqeH is an 99.0 3.1E-10 6.8E-15 88.4 3.5 56 24-83 128-190 (190)
432 TIGR00485 EF-Tu translation el 99.0 2E-09 4.2E-14 93.2 8.7 93 23-127 12-118 (394)
433 PRK13642 cbiO cobalt transport 99.0 3.3E-10 7.2E-15 93.5 3.7 84 2-91 11-101 (277)
434 cd04161 Arl2l1_Arl13_like Arl2 99.0 6E-09 1.3E-13 79.4 10.4 79 25-120 1-79 (167)
435 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.0 3.4E-10 7.4E-15 91.3 3.6 46 2-49 7-55 (238)
436 PRK13645 cbiO cobalt transport 99.0 2.7E-10 5.9E-15 94.6 3.1 46 2-49 13-63 (289)
437 cd04130 Wrch_1 Wrch-1 subfamil 99.0 3.9E-09 8.4E-14 80.8 9.3 135 25-175 2-170 (173)
438 TIGR01394 TypA_BipA GTP-bindin 99.0 2.6E-09 5.7E-14 96.4 9.6 91 24-126 2-106 (594)
439 PRK15079 oligopeptide ABC tran 99.0 5.9E-10 1.3E-14 94.1 5.1 80 8-93 34-121 (331)
440 cd04146 RERG_RasL11_like RERG/ 99.0 5.2E-09 1.1E-13 79.4 9.8 138 25-177 1-162 (165)
441 cd00267 ABC_ATPase ABC (ATP-bi 99.0 1.4E-09 3.1E-14 82.1 6.6 45 2-48 6-50 (157)
442 PRK13649 cbiO cobalt transport 99.0 3E-10 6.4E-15 93.9 3.1 46 2-49 9-59 (280)
443 PRK15093 antimicrobial peptide 99.0 3.9E-10 8.5E-15 95.3 3.7 45 2-48 10-58 (330)
444 PRK11022 dppD dipeptide transp 99.0 7.7E-10 1.7E-14 93.3 5.4 45 2-48 10-58 (326)
445 PRK09580 sufC cysteine desulfu 99.0 3.3E-10 7.1E-15 91.9 3.1 44 2-47 8-51 (248)
446 PF00350 Dynamin_N: Dynamin fa 99.0 2.7E-09 5.9E-14 81.2 8.0 24 26-49 1-24 (168)
447 PRK10218 GTP-binding protein; 99.0 3.2E-09 7E-14 95.9 9.6 129 24-165 6-171 (607)
448 cd01857 HSR1_MMR1 HSR1/MMR1. 99.0 2.1E-09 4.6E-14 79.7 7.1 57 24-85 84-140 (141)
449 PRK10636 putative ABC transpor 99.0 3.5E-10 7.7E-15 103.4 3.5 47 1-49 318-364 (638)
450 PRK13636 cbiO cobalt transport 99.0 3.3E-10 7.2E-15 93.8 3.0 75 2-82 12-92 (283)
451 PRK14264 phosphate ABC transpo 99.0 4.4E-10 9.6E-15 94.0 3.8 82 2-85 52-139 (305)
452 TIGR02868 CydC thiol reductant 99.0 2E-10 4.3E-15 103.1 1.7 78 2-86 341-422 (529)
453 cd03253 ABCC_ATM1_transporter 99.0 4.1E-10 9E-15 90.7 3.4 46 2-49 7-53 (236)
454 cd01892 Miro2 Miro2 subfamily. 99.0 2.2E-09 4.8E-14 82.0 7.3 140 24-177 5-164 (169)
455 cd01871 Rac1_like Rac1-like su 99.0 7.7E-09 1.7E-13 79.4 10.2 136 24-176 2-172 (174)
456 PRK13639 cbiO cobalt transport 99.0 3.5E-10 7.6E-15 93.3 2.9 46 2-49 8-54 (275)
457 PRK13651 cobalt transporter AT 99.0 3.4E-10 7.4E-15 94.6 2.8 39 9-49 21-59 (305)
458 cd04134 Rho3 Rho3 subfamily. 99.0 3E-09 6.5E-14 82.8 7.9 137 25-177 2-172 (189)
459 COG1119 ModF ABC-type molybden 99.0 6.1E-10 1.3E-14 88.0 4.0 46 2-49 38-83 (257)
460 PRK13634 cbiO cobalt transport 99.0 3.4E-10 7.4E-15 94.0 2.7 46 2-49 9-59 (290)
461 cd04169 RF3 RF3 subfamily. Pe 98.9 6.7E-09 1.4E-13 85.2 10.3 90 24-125 3-112 (267)
462 cd03252 ABCC_Hemolysin The ABC 98.9 5.1E-10 1.1E-14 90.2 3.6 46 2-49 7-54 (237)
463 PRK14245 phosphate ABC transpo 98.9 2.7E-10 5.9E-15 92.6 1.9 81 2-85 10-97 (250)
464 PRK05433 GTP-binding protein L 98.9 3E-09 6.4E-14 96.3 8.6 143 24-178 8-183 (600)
465 cd04143 Rhes_like Rhes_like su 98.9 8.9E-09 1.9E-13 83.5 10.6 136 25-177 2-169 (247)
466 cd04170 EF-G_bact Elongation f 98.9 4.4E-09 9.6E-14 86.4 8.9 88 25-124 1-104 (268)
467 cd04120 Rab12 Rab12 subfamily. 98.9 1.8E-08 3.8E-13 79.3 11.8 139 25-178 2-162 (202)
468 TIGR03596 GTPase_YlqF ribosome 98.9 4.6E-09 1E-13 86.6 8.9 59 24-87 119-177 (276)
469 PLN03127 Elongation factor Tu; 98.9 2.3E-09 5E-14 93.9 7.4 93 23-127 61-167 (447)
470 PRK05506 bifunctional sulfate 98.9 6.6E-09 1.4E-13 95.0 10.7 138 22-171 23-213 (632)
471 TIGR02770 nickel_nikD nickel i 98.9 1.2E-09 2.6E-14 87.7 5.3 71 10-82 1-72 (230)
472 COG1161 Predicted GTPases [Gen 98.9 2.8E-09 6E-14 89.6 7.6 61 24-89 133-193 (322)
473 TIGR02633 xylG D-xylose ABC tr 98.9 7.9E-10 1.7E-14 98.6 4.5 45 2-48 264-311 (500)
474 PF00025 Arf: ADP-ribosylation 98.9 1.5E-09 3.3E-14 83.5 5.5 136 23-176 14-173 (175)
475 PRK05124 cysN sulfate adenylyl 98.9 1.2E-09 2.5E-14 96.5 5.4 137 23-171 27-217 (474)
476 KOG1491 Predicted GTP-binding 98.9 4E-08 8.8E-13 80.9 13.8 89 24-118 21-125 (391)
477 TIGR02034 CysN sulfate adenyly 98.9 8.9E-09 1.9E-13 89.4 10.7 135 24-170 1-188 (406)
478 PRK13643 cbiO cobalt transport 98.9 5.4E-10 1.2E-14 92.7 3.0 67 9-81 20-93 (288)
479 PRK13549 xylose transporter AT 98.9 1.1E-09 2.3E-14 97.9 4.9 46 1-48 265-313 (506)
480 PRK04004 translation initiatio 98.9 3.9E-08 8.4E-13 88.9 14.9 90 24-126 7-113 (586)
481 cd03248 ABCC_TAP TAP, the Tran 98.9 6.6E-10 1.4E-14 88.9 3.2 46 2-49 18-66 (226)
482 KOG1486 GTP-binding protein DR 98.9 2.9E-09 6.2E-14 84.3 6.6 96 16-118 55-150 (364)
483 cd01851 GBP Guanylate-binding 98.9 1.2E-08 2.7E-13 81.5 10.5 93 23-118 7-102 (224)
484 TIGR03680 eif2g_arch translati 98.9 2.6E-09 5.5E-14 92.8 7.0 142 24-177 5-194 (406)
485 cd00882 Ras_like_GTPase Ras-li 98.9 1.4E-09 3E-14 80.0 4.6 132 28-175 1-156 (157)
486 TIGR03269 met_CoM_red_A2 methy 98.9 1.1E-09 2.3E-14 98.2 4.6 80 8-93 297-386 (520)
487 PRK14257 phosphate ABC transpo 98.9 9.9E-10 2.1E-14 92.7 3.9 81 2-85 87-176 (329)
488 smart00053 DYNc Dynamin, GTPas 98.9 2.6E-08 5.6E-13 80.1 11.8 100 24-125 27-180 (240)
489 PRK11308 dppF dipeptide transp 98.9 1.5E-09 3.2E-14 91.6 4.7 75 8-88 28-110 (327)
490 cd03238 ABC_UvrA The excision 98.9 9.4E-10 2E-14 84.5 3.2 37 7-45 7-43 (176)
491 cd03236 ABC_RNaseL_inhibitor_d 98.9 1.6E-09 3.6E-14 88.2 4.8 47 1-50 6-53 (255)
492 COG4674 Uncharacterized ABC-ty 98.9 8.4E-11 1.8E-15 89.8 -2.6 88 1-94 11-103 (249)
493 PRK10261 glutathione transport 98.9 1.1E-09 2.5E-14 99.9 4.2 46 2-49 19-68 (623)
494 PRK12289 GTPase RsgA; Reviewed 98.9 2.4E-09 5.2E-14 90.7 5.8 60 24-87 173-238 (352)
495 KOG0073 GTP-binding ADP-ribosy 98.9 2.7E-08 5.8E-13 73.7 10.5 82 24-122 17-98 (185)
496 PRK13545 tagH teichoic acids e 98.9 1.5E-09 3.2E-14 95.7 4.6 40 8-49 37-76 (549)
497 COG4988 CydD ABC-type transpor 98.9 8.8E-10 1.9E-14 96.6 3.2 78 2-86 327-409 (559)
498 COG4917 EutP Ethanolamine util 98.9 3.4E-09 7.3E-14 75.0 5.4 131 24-176 2-143 (148)
499 PRK00098 GTPase RsgA; Reviewed 98.9 7E-09 1.5E-13 86.4 8.4 58 24-85 165-228 (298)
500 PRK10261 glutathione transport 98.9 1.8E-09 3.9E-14 98.6 5.3 79 8-92 337-423 (623)
No 1
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.85 E-value=2.9e-21 Score=144.47 Aligned_cols=142 Identities=20% Similarity=0.265 Sum_probs=97.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhh
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLA 104 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~ 104 (231)
+|+|+|+||+|||||||+|+|.....+ +++|+|++...+.... .+..+.++|+||+|+..... ..+.+...+. .
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~v~--n~pG~Tv~~~~g~~~~-~~~~~~lvDlPG~ysl~~~s--~ee~v~~~~l-~ 75 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQKVG--NWPGTTVEKKEGIFKL-GDQQVELVDLPGIYSLSSKS--EEERVARDYL-L 75 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEE--ESTTSSSEEEEEEEEE-TTEEEEEEE----SSSSSSS--HHHHHHHHHH-H
T ss_pred EEEEECCCCCCHHHHHHHHHCCCceec--CCCCCCeeeeeEEEEe-cCceEEEEECCCcccCCCCC--cHHHHHHHHH-h
Confidence 699999999999999999999996543 6899999988877777 78999999999998754322 1222222222 2
Q ss_pred cCCccEEEEEEECCCCCCHHHHH----hcCCCCcHHHHHHHHH---hhH-----HHHHhhcc-chhhhhhhhHhhHHHHH
Q 038053 105 KGGIHAVLVVFSVRSRFSQEEEA----ANGGQPYTDEFLAELK---RGA-----TELRDQQA-EVDSLKEYSKQEISKLM 171 (231)
Q Consensus 105 ~~~~~~il~vvd~~~~~~~~~~~----~~~~~~~~~~~~~~~~---~~~-----~~l~~~~~-~i~~is~~~~~~i~~l~ 171 (231)
...+|+++.|+|++ .+...... ...+.|.+ .+++++| +.+ +.|.+.++ |++++|+.++.|+++|+
T Consensus 76 ~~~~D~ii~VvDa~-~l~r~l~l~~ql~e~g~P~v-vvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~L~ 153 (156)
T PF02421_consen 76 SEKPDLIIVVVDAT-NLERNLYLTLQLLELGIPVV-VVLNKMDEAERKGIEIDAEKLSERLGVPVIPVSARTGEGIDELK 153 (156)
T ss_dssp HTSSSEEEEEEEGG-GHHHHHHHHHHHHHTTSSEE-EEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHH
T ss_pred hcCCCEEEEECCCC-CHHHHHHHHHHHHHcCCCEE-EEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEEeCCCcCHHHHH
Confidence 47899999999998 44332221 44556655 2233333 222 56777776 99999999999999998
Q ss_pred HHH
Q 038053 172 GQM 174 (231)
Q Consensus 172 ~~i 174 (231)
++|
T Consensus 154 ~~I 156 (156)
T PF02421_consen 154 DAI 156 (156)
T ss_dssp HHH
T ss_pred hhC
Confidence 875
No 2
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.84 E-value=7.1e-21 Score=161.05 Aligned_cols=150 Identities=21% Similarity=0.246 Sum_probs=121.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
+.|+|||+||+|||||||.|+|...+.+ .+.+|+|++..+....| .+..+.++||+|+.+.. .+.+...+......
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV-~D~pGvTRDr~y~~~~~-~~~~f~lIDTgGl~~~~--~~~l~~~i~~Qa~~ 79 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIV-SDTPGVTRDRIYGDAEW-LGREFILIDTGGLDDGD--EDELQELIREQALI 79 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEe-ecCCCCccCCccceeEE-cCceEEEEECCCCCcCC--chHHHHHHHHHHHH
Confidence 5899999999999999999999998887 58999999999999999 78889999999998632 24577778888888
Q ss_pred hcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhhH-----HHHHh-hccchhhhhhhhHhhHHHHHH
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRGA-----TELRD-QQAEVDSLKEYSKQEISKLMG 172 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-----~~l~~-~~~~i~~is~~~~~~i~~l~~ 172 (231)
++..+|++++|+|..+++++.|.. ....+|.+ .++|+++... .++.+ .+..++++||.+|.|+..|++
T Consensus 80 Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpvi-LvvNK~D~~~~e~~~~efyslG~g~~~~ISA~Hg~Gi~dLld 158 (444)
T COG1160 80 AIEEADVILFVVDGREGITPADEEIAKILRRSKKPVI-LVVNKIDNLKAEELAYEFYSLGFGEPVPISAEHGRGIGDLLD 158 (444)
T ss_pred HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEE-EEEEcccCchhhhhHHHHHhcCCCCceEeehhhccCHHHHHH
Confidence 889999999999999999999977 33335554 5566665321 12222 234788899999999999999
Q ss_pred HHHHHH
Q 038053 173 QMQESY 178 (231)
Q Consensus 173 ~i~~~~ 178 (231)
.+.+.+
T Consensus 159 ~v~~~l 164 (444)
T COG1160 159 AVLELL 164 (444)
T ss_pred HHHhhc
Confidence 998864
No 3
>COG1159 Era GTPase [General function prediction only]
Probab=99.83 E-value=1.2e-19 Score=146.13 Aligned_cols=150 Identities=18% Similarity=0.270 Sum_probs=111.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhh
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLA 104 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~ 104 (231)
.|++||+||+|||||+|.|+|...+..+ ..+++|+..-.+.... ....++++||||++... ..+++.+.+.+..+
T Consensus 8 fVaIiGrPNvGKSTLlN~l~G~KisIvS-~k~QTTR~~I~GI~t~-~~~QiIfvDTPGih~pk---~~l~~~m~~~a~~s 82 (298)
T COG1159 8 FVAIIGRPNVGKSTLLNALVGQKISIVS-PKPQTTRNRIRGIVTT-DNAQIIFVDTPGIHKPK---HALGELMNKAARSA 82 (298)
T ss_pred EEEEEcCCCCcHHHHHHHHhcCceEeec-CCcchhhhheeEEEEc-CCceEEEEeCCCCCCcc---hHHHHHHHHHHHHH
Confidence 8999999999999999999999987763 5666666555554444 68889999999999753 66788888888899
Q ss_pred cCCccEEEEEEECCCCCCHHHHH----hcC-CCCcHHHHHHHHHhhH---------HHHHhhcc--chhhhhhhhHhhHH
Q 038053 105 KGGIHAVLVVFSVRSRFSQEEEA----ANG-GQPYTDEFLAELKRGA---------TELRDQQA--EVDSLKEYSKQEIS 168 (231)
Q Consensus 105 ~~~~~~il~vvd~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~---------~~l~~~~~--~i~~is~~~~~~i~ 168 (231)
+..+|++++++|+...|...|.. ... ..|.+ .++++++.-. +.+....+ .++++||.+|.+++
T Consensus 83 l~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvi-l~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~ 161 (298)
T COG1159 83 LKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVI-LVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNVD 161 (298)
T ss_pred hccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeE-EEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCCHH
Confidence 99999999999999779988876 111 12332 2233333110 12222222 78999999999999
Q ss_pred HHHHHHHHHHHH
Q 038053 169 KLMGQMQESYED 180 (231)
Q Consensus 169 ~l~~~i~~~~~~ 180 (231)
.|.+.+.+.+.+
T Consensus 162 ~L~~~i~~~Lpe 173 (298)
T COG1159 162 TLLEIIKEYLPE 173 (298)
T ss_pred HHHHHHHHhCCC
Confidence 999999886543
No 4
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.82 E-value=4.5e-20 Score=156.24 Aligned_cols=173 Identities=24% Similarity=0.302 Sum_probs=131.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053 23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG 102 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~ 102 (231)
+.+|||||+||+|||||+|+|+|+.....+ +.+|+|++......++ +++.+.++||.|+.......+.+...-.....
T Consensus 178 ~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~-~~aGTTRD~I~~~~e~-~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~ 255 (444)
T COG1160 178 PIKIAIIGRPNVGKSSLINAILGEERVIVS-DIAGTTRDSIDIEFER-DGRKYVLIDTAGIRRKGKITESVEKYSVARTL 255 (444)
T ss_pred ceEEEEEeCCCCCchHHHHHhccCceEEec-CCCCccccceeeeEEE-CCeEEEEEECCCCCcccccccceEEEeehhhH
Confidence 489999999999999999999999988874 7889999887777776 89999999999998765554433333233334
Q ss_pred hhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcH-----HHHHHHH--H-hhH-HHHHhhcc-----chhhhhhhh
Q 038053 103 LAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYT-----DEFLAEL--K-RGA-TELRDQQA-----EVDSLKEYS 163 (231)
Q Consensus 103 ~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~-----~~~~~~~--~-~~~-~~l~~~~~-----~i~~is~~~ 163 (231)
.+...++++++|+|++.+++.+|.. ...+++.+ |+++.+. . ... ..|...++ +++++||.+
T Consensus 256 ~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~ 335 (444)
T COG1160 256 KAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALT 335 (444)
T ss_pred hHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecC
Confidence 5568899999999999999999987 33344433 4443321 0 001 24444443 899999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 038053 164 KQEISKLMGQMQESYEDQIKRITE-MVESELKETT 197 (231)
Q Consensus 164 ~~~i~~l~~~i~~~~~~~~~~~~~-~~~~~~~~~~ 197 (231)
|.++..+++.+...|+.+..++.+ .+++.++.+.
T Consensus 336 ~~~i~~l~~~i~~~~~~~~~ri~Ts~LN~~l~~a~ 370 (444)
T COG1160 336 GQGLDKLFEAIKEIYECATRRISTSLLNRVLEDAV 370 (444)
T ss_pred CCChHHHHHHHHHHHHHhccccCHHHHHHHHHHHH
Confidence 999999999999999999988886 6677776553
No 5
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.79 E-value=6.8e-19 Score=138.02 Aligned_cols=102 Identities=52% Similarity=0.826 Sum_probs=82.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
.+|+|+|++|+|||||+|+|+|...+.++....++|..++.....+ .+..+.++||||+++.....+.+..++..++..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~-~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~ 79 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW-DGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSL 79 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE-CCeEEEEEECcCCCCccCChHHHHHHHHHHHHh
Confidence 3799999999999999999999988766545667888777776666 788999999999998654445566677777777
Q ss_pred hcCCccEEEEEEECCCCCCHHHHH
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEEEA 127 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~~~ 127 (231)
+.+.+|++++|+++.. ++..+..
T Consensus 80 ~~~g~~~illVi~~~~-~t~~d~~ 102 (196)
T cd01852 80 SAPGPHAFLLVVPLGR-FTEEEEQ 102 (196)
T ss_pred cCCCCEEEEEEEECCC-cCHHHHH
Confidence 7789999999999984 7777654
No 6
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.79 E-value=2.5e-18 Score=136.38 Aligned_cols=102 Identities=43% Similarity=0.745 Sum_probs=78.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
.+|+|+|++||||||++|+|+|...+..+....++|..+......+ .+..+.|+|||||++.....+.+..++..++..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~-~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~ 79 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEV-DGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSL 79 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEE-TTEEEEEEE--SSEETTEEHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeee-cceEEEEEeCCCCCCCcccHHHHHHHHHHHHHh
Confidence 4799999999999999999999998877655667787777776666 899999999999998776666677778888777
Q ss_pred hcCCccEEEEEEECCCCCCHHHHH
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEEEA 127 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~~~ 127 (231)
..+++|++++|+++. +++..+..
T Consensus 80 ~~~g~ha~llVi~~~-r~t~~~~~ 102 (212)
T PF04548_consen 80 CSPGPHAFLLVIPLG-RFTEEDRE 102 (212)
T ss_dssp TTT-ESEEEEEEETT-B-SHHHHH
T ss_pred ccCCCeEEEEEEecC-cchHHHHH
Confidence 778999999999999 99988866
No 7
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.78 E-value=2.2e-18 Score=146.41 Aligned_cols=156 Identities=21% Similarity=0.279 Sum_probs=117.8
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHH
Q 038053 18 SSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEI 97 (231)
Q Consensus 18 i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~ 97 (231)
+..| ..++|+|+||+|||||+|+|++.+.+++ .+.+|+|++.-...... ++..+.++||.|+..+. +.+.+.-
T Consensus 214 lr~G--~kvvIiG~PNvGKSSLLNaL~~~d~AIV-TdI~GTTRDviee~i~i-~G~pv~l~DTAGiRet~---d~VE~iG 286 (454)
T COG0486 214 LREG--LKVVIIGRPNVGKSSLLNALLGRDRAIV-TDIAGTTRDVIEEDINL-NGIPVRLVDTAGIRETD---DVVERIG 286 (454)
T ss_pred hhcC--ceEEEECCCCCcHHHHHHHHhcCCceEe-cCCCCCccceEEEEEEE-CCEEEEEEecCCcccCc---cHHHHHH
Confidence 3467 9999999999999999999999999888 48899999987777777 99999999999999754 3444444
Q ss_pred HHHHhhhcCCccEEEEEEECCCCCCHHHHH----hcCCCCcHHHHHHHHHhhH----HHHHhhcc-chhhhhhhhHhhHH
Q 038053 98 VKRIGLAKGGIHAVLVVFSVRSRFSQEEEA----ANGGQPYTDEFLAELKRGA----TELRDQQA-EVDSLKEYSKQEIS 168 (231)
Q Consensus 98 ~~~~~~~~~~~~~il~vvd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~----~~l~~~~~-~i~~is~~~~~~i~ 168 (231)
..........+|.+++++|++..++..+.. .....+++ .+.|+.|-.. ..++.... ++..+|+++++|++
T Consensus 287 IeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~~~~~~~i-~v~NK~DL~~~~~~~~~~~~~~~~~i~iSa~t~~Gl~ 365 (454)
T COG0486 287 IERAKKAIEEADLVLFVLDASQPLDKEDLALIELLPKKKPII-VVLNKADLVSKIELESEKLANGDAIISISAKTGEGLD 365 (454)
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHHhcccCCCEE-EEEechhcccccccchhhccCCCceEEEEecCccCHH
Confidence 555566678999999999999666776655 22233443 4556655211 11111111 57889999999999
Q ss_pred HHHHHHHHHHHHH
Q 038053 169 KLMGQMQESYEDQ 181 (231)
Q Consensus 169 ~l~~~i~~~~~~~ 181 (231)
.|.+++.+.+...
T Consensus 366 ~L~~~i~~~~~~~ 378 (454)
T COG0486 366 ALREAIKQLFGKG 378 (454)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999987766
No 8
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.77 E-value=3e-18 Score=151.27 Aligned_cols=151 Identities=19% Similarity=0.231 Sum_probs=110.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
..|+++|+||+|||||+|+|+|.....+ +++|+|++...+.... ++..+.++|.||.|+-... ..++.+.+.+..
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~Vg--NwpGvTVEkkeg~~~~-~~~~i~ivDLPG~YSL~~~--S~DE~Var~~ll 78 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQKVG--NWPGVTVEKKEGKLKY-KGHEIEIVDLPGTYSLTAY--SEDEKVARDFLL 78 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCceec--CCCCeeEEEEEEEEEe-cCceEEEEeCCCcCCCCCC--CchHHHHHHHHh
Confidence 5799999999999999999999998765 7999999998888877 7778999999999975432 122333333222
Q ss_pred hcCCccEEEEEEECCCCCCHHHHH----hcCCCCcH--HHHHHHHHhhH-----HHHHhhcc-chhhhhhhhHhhHHHHH
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEEEA----ANGGQPYT--DEFLAELKRGA-----TELRDQQA-EVDSLKEYSKQEISKLM 171 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~~~----~~~~~~~~--~~~~~~~~~~~-----~~l~~~~~-~i~~is~~~~~~i~~l~ 171 (231)
...+|+++.|+|++ .+...-+- .+.+.|++ ..+++.+++.+ ++|++.++ |+++++|..|.|+++++
T Consensus 79 -~~~~D~ivnVvDAt-nLeRnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~~l~ 156 (653)
T COG0370 79 -EGKPDLIVNVVDAT-NLERNLYLTLQLLELGIPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAKRGEGLEELK 156 (653)
T ss_pred -cCCCCEEEEEcccc-hHHHHHHHHHHHHHcCCCeEEEeccHhhHHhcCCcccHHHHHHHhCCCEEEEEeecCCCHHHHH
Confidence 37899999999998 33333222 34455544 23444443332 57777777 99999999999999999
Q ss_pred HHHHHHHHHH
Q 038053 172 GQMQESYEDQ 181 (231)
Q Consensus 172 ~~i~~~~~~~ 181 (231)
.++....+..
T Consensus 157 ~~i~~~~~~~ 166 (653)
T COG0370 157 RAIIELAESK 166 (653)
T ss_pred HHHHHhcccc
Confidence 9997644433
No 9
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.69 E-value=7.3e-16 Score=126.68 Aligned_cols=148 Identities=19% Similarity=0.216 Sum_probs=96.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhh
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLA 104 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~ 104 (231)
+|+|+|+||||||||+|+|+|...... ...+++|+....+.... .+..+.++||||+.... ..+...+...+...
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~v-s~~~~TTr~~i~~i~~~-~~~qii~vDTPG~~~~~---~~l~~~~~~~~~~~ 76 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISIT-SPKAQTTRNRISGIHTT-GASQIIFIDTPGFHEKK---HSLNRLMMKEARSA 76 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeec-CCCCCcccCcEEEEEEc-CCcEEEEEECcCCCCCc---chHHHHHHHHHHHH
Confidence 799999999999999999999876443 24556666543332222 55678899999997642 23344455555566
Q ss_pred cCCccEEEEEEECCCCCCHHHHH----hcCCCCcHHHHHHHHHhhH--------HHHHhhc--cchhhhhhhhHhhHHHH
Q 038053 105 KGGIHAVLVVFSVRSRFSQEEEA----ANGGQPYTDEFLAELKRGA--------TELRDQQ--AEVDSLKEYSKQEISKL 170 (231)
Q Consensus 105 ~~~~~~il~vvd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~--------~~l~~~~--~~i~~is~~~~~~i~~l 170 (231)
+..+|++++|+|+++..+..... .....|.+ .++|+.|... ..+.... .+++++||.+|.|++++
T Consensus 77 l~~aDvvl~VvD~~~~~~~~~~i~~~l~~~~~p~i-lV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L 155 (270)
T TIGR00436 77 IGGVDLILFVVDSDQWNGDGEFVLTKLQNLKRPVV-LTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGDNTSFL 155 (270)
T ss_pred HhhCCEEEEEEECCCCCchHHHHHHHHHhcCCCEE-EEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHH
Confidence 68899999999998554443211 22233433 2333433110 1222222 26788999999999999
Q ss_pred HHHHHHHH
Q 038053 171 MGQMQESY 178 (231)
Q Consensus 171 ~~~i~~~~ 178 (231)
++.+.+..
T Consensus 156 ~~~l~~~l 163 (270)
T TIGR00436 156 AAFIEVHL 163 (270)
T ss_pred HHHHHHhC
Confidence 99988754
No 10
>PRK15494 era GTPase Era; Provisional
Probab=99.69 E-value=2.5e-16 Score=133.11 Aligned_cols=164 Identities=17% Similarity=0.197 Sum_probs=110.5
Q ss_pred CcccCCCcccCCCCCCce-------EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEe
Q 038053 7 ERVIDGDWKPTSSSNGKR-------TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVID 79 (231)
Q Consensus 7 ~~~~~~~~~~~i~~g~~~-------~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~D 79 (231)
....+..+++.+..| . +|+++|++|||||||+|.|+|....... ..+++|+....+.... .+..+.++|
T Consensus 31 ~~~~~~~~~~~~~~g--~~~~~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs-~k~~tTr~~~~~~~~~-~~~qi~~~D 106 (339)
T PRK15494 31 STGSTSKLPLEVKFG--KMSNQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVT-PKVQTTRSIITGIITL-KDTQVILYD 106 (339)
T ss_pred CcccccCCccccccc--cccccceeEEEEEcCCCCCHHHHHHHHhCCceeecc-CCCCCccCcEEEEEEe-CCeEEEEEE
Confidence 344577778888877 5 9999999999999999999998764432 3455665544444444 667889999
Q ss_pred CCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhhH-------H
Q 038053 80 TPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRGA-------T 147 (231)
Q Consensus 80 tpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-------~ 147 (231)
|||+.... ..+...+...+..++..+|++++|+|..+.+...+.. .....+.+ .++|++|... +
T Consensus 107 TpG~~~~~---~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~I-lViNKiDl~~~~~~~~~~ 182 (339)
T PRK15494 107 TPGIFEPK---GSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPI-FLLNKIDIESKYLNDIKA 182 (339)
T ss_pred CCCcCCCc---ccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEE-EEEEhhcCccccHHHHHH
Confidence 99986432 2244445555555668899999999998667665533 12223443 3455554211 1
Q ss_pred HHHhhc--cchhhhhhhhHhhHHHHHHHHHHHH
Q 038053 148 ELRDQQ--AEVDSLKEYSKQEISKLMGQMQESY 178 (231)
Q Consensus 148 ~l~~~~--~~i~~is~~~~~~i~~l~~~i~~~~ 178 (231)
.+.... .+++++||++|.|++.++..+....
T Consensus 183 ~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l 215 (339)
T PRK15494 183 FLTENHPDSLLFPISALSGKNIDGLLEYITSKA 215 (339)
T ss_pred HHHhcCCCcEEEEEeccCccCHHHHHHHHHHhC
Confidence 222222 2578899999999999999887753
No 11
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.68 E-value=1.1e-15 Score=133.64 Aligned_cols=162 Identities=25% Similarity=0.318 Sum_probs=110.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053 23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG 102 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~ 102 (231)
..+|+++|++|+|||||+|+|+|......+ ..+++|.+........ .+..+.++||||+.........+.........
T Consensus 173 ~~~v~ivG~~n~GKStlin~ll~~~~~~~~-~~~gtt~~~~~~~~~~-~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~ 250 (435)
T PRK00093 173 PIKIAIIGRPNVGKSSLINALLGEERVIVS-DIAGTTRDSIDTPFER-DGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL 250 (435)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCceEEEEEEEEEE-CCeeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence 389999999999999999999998765443 4667777655444444 67788999999987644433333322222233
Q ss_pred hhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhh----H----HHHHhhc-----cchhhhhhhhH
Q 038053 103 LAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRG----A----TELRDQQ-----AEVDSLKEYSK 164 (231)
Q Consensus 103 ~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~----~----~~l~~~~-----~~i~~is~~~~ 164 (231)
.++..+|++++|+|++++++..+.. ...+.+++ .++|++|.. . ..+...+ .+++++||++|
T Consensus 251 ~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~i-vv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~ 329 (435)
T PRK00093 251 KAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALV-IVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISALTG 329 (435)
T ss_pred HHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEE-EEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeCCCC
Confidence 4557889999999999888887765 22334443 233333210 0 2233322 27888999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 038053 165 QEISKLMGQMQESYEDQIKRITE 187 (231)
Q Consensus 165 ~~i~~l~~~i~~~~~~~~~~~~~ 187 (231)
.|+.+++..+...+..+..++.+
T Consensus 330 ~gv~~l~~~i~~~~~~~~~~i~t 352 (435)
T PRK00093 330 QGVDKLLEAIDEAYENANRRIST 352 (435)
T ss_pred CCHHHHHHHHHHHHHHHcCcCCh
Confidence 99999999999988777655443
No 12
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.65 E-value=3.2e-15 Score=130.64 Aligned_cols=161 Identities=24% Similarity=0.301 Sum_probs=108.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
.+|+++|.+|+|||||+|.|+|...... ...+++|.+........ .+..+.++||||+.......+.+..........
T Consensus 173 ~~v~ivG~~~~GKSsLin~l~~~~~~~~-~~~~gtt~~~~~~~~~~-~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~ 250 (429)
T TIGR03594 173 IKIAIIGRPNVGKSTLVNALLGEERVIV-SDIAGTTRDSIDIPFER-NGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLK 250 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCeeec-CCCCCceECcEeEEEEE-CCcEEEEEECCCccccccchhhHHHHHHHHHHH
Confidence 6899999999999999999999875433 24566776655444444 677899999999876544333333222222334
Q ss_pred hcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhh-----H----HHHHhhc-----cchhhhhhhhH
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRG-----A----TELRDQQ-----AEVDSLKEYSK 164 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-----~----~~l~~~~-----~~i~~is~~~~ 164 (231)
++..+|++++|+|+.++++..+.. ...+.+++ .++|+.|.. . ..+...+ .+++++||++|
T Consensus 251 ~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~ii-iv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g 329 (429)
T TIGR03594 251 AIERADVVLLVLDATEGITEQDLRIAGLILEAGKALV-IVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALTG 329 (429)
T ss_pred HHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEE-EEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeCCCC
Confidence 567889999999999888887765 22334443 222332210 0 2333332 27888999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 038053 165 QEISKLMGQMQESYEDQIKRITE 187 (231)
Q Consensus 165 ~~i~~l~~~i~~~~~~~~~~~~~ 187 (231)
.|+.+++..+...++.+..++.+
T Consensus 330 ~~v~~l~~~i~~~~~~~~~~i~t 352 (429)
T TIGR03594 330 QGVDKLLDAIDEVYENANRRIST 352 (429)
T ss_pred CCHHHHHHHHHHHHHHhcCcCCH
Confidence 99999999999988777655543
No 13
>COG2262 HflX GTPases [General function prediction only]
Probab=99.65 E-value=6.9e-16 Score=129.22 Aligned_cols=153 Identities=18% Similarity=0.134 Sum_probs=104.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053 23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG 102 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~ 102 (231)
.+.|+|+|++|||||||||+|+|...+.. +.-..|.++......+..++.+.+.||.||.... ...+...|...+.
T Consensus 192 ~p~vaLvGYTNAGKSTL~N~LT~~~~~~~--d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~L--P~~LV~AFksTLE 267 (411)
T COG2262 192 IPLVALVGYTNAGKSTLFNALTGADVYVA--DQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDL--PHPLVEAFKSTLE 267 (411)
T ss_pred CCeEEEEeeccccHHHHHHHHhccCeecc--ccccccccCceeEEEeCCCceEEEecCccCcccC--ChHHHHHHHHHHH
Confidence 47999999999999999999999987643 3444455554445555457899999999998743 3556666666555
Q ss_pred hhcCCccEEEEEEECCCCCCHHHHH--------h-cCCCCcHHHHHHHHHhhH-----HHHHhhccchhhhhhhhHhhHH
Q 038053 103 LAKGGIHAVLVVFSVRSRFSQEEEA--------A-NGGQPYTDEFLAELKRGA-----TELRDQQAEVDSLKEYSKQEIS 168 (231)
Q Consensus 103 ~~~~~~~~il~vvd~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~-----~~l~~~~~~i~~is~~~~~~i~ 168 (231)
.. ..+|.+++|||++++....... . ....|. +.++|++|.-. ..+....+..+++||.+|.|++
T Consensus 268 E~-~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~-i~v~NKiD~~~~~~~~~~~~~~~~~~v~iSA~~~~gl~ 345 (411)
T COG2262 268 EV-KEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPI-ILVLNKIDLLEDEEILAELERGSPNPVFISAKTGEGLD 345 (411)
T ss_pred Hh-hcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCE-EEEEecccccCchhhhhhhhhcCCCeEEEEeccCcCHH
Confidence 44 7899999999999652222222 1 122344 35667755211 1222222347889999999999
Q ss_pred HHHHHHHHHHHHH
Q 038053 169 KLMGQMQESYEDQ 181 (231)
Q Consensus 169 ~l~~~i~~~~~~~ 181 (231)
.|+..|.......
T Consensus 346 ~L~~~i~~~l~~~ 358 (411)
T COG2262 346 LLRERIIELLSGL 358 (411)
T ss_pred HHHHHHHHHhhhc
Confidence 9999998866533
No 14
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.65 E-value=4.2e-15 Score=131.09 Aligned_cols=169 Identities=20% Similarity=0.239 Sum_probs=111.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHH-
Q 038053 23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRI- 101 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~- 101 (231)
..+|+++|++|+|||||+|.|++...... ...+++|++........ .+..+.++||||+....... ...+....+
T Consensus 211 ~~kI~iiG~~nvGKSSLin~l~~~~~~~~-s~~~gtT~d~~~~~~~~-~~~~~~l~DTaG~~~~~~~~--~~~e~~~~~~ 286 (472)
T PRK03003 211 PRRVALVGKPNVGKSSLLNKLAGEERSVV-DDVAGTTVDPVDSLIEL-GGKTWRFVDTAGLRRRVKQA--SGHEYYASLR 286 (472)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCcccc-cCCCCccCCcceEEEEE-CCEEEEEEECCCcccccccc--chHHHHHHHH
Confidence 47999999999999999999999875433 24667777665444544 67778899999986432211 112222211
Q ss_pred -hhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhh-------H-HHHHhhc-----cchhhhhhh
Q 038053 102 -GLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRG-------A-TELRDQQ-----AEVDSLKEY 162 (231)
Q Consensus 102 -~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-------~-~~l~~~~-----~~i~~is~~ 162 (231)
..++..+|++++|+|++++.+..+.. ...+.+++ .++|++|.. . ..+...+ .+++.+||+
T Consensus 287 ~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piI-iV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk 365 (472)
T PRK03003 287 THAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALV-LAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAK 365 (472)
T ss_pred HHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECC
Confidence 23457899999999999888877654 22334443 233333310 0 1222211 267789999
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 038053 163 SKQEISKLMGQMQESYEDQIKRITE-MVESELKET 196 (231)
Q Consensus 163 ~~~~i~~l~~~i~~~~~~~~~~~~~-~~~~~~~~~ 196 (231)
+|.|+++++..+...++.+..++.+ .+++.+++.
T Consensus 366 ~g~gv~~lf~~i~~~~~~~~~~i~t~~ln~~~~~~ 400 (472)
T PRK03003 366 TGRAVDKLVPALETALESWDTRIPTGRLNAWLGEL 400 (472)
T ss_pred CCCCHHHHHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 9999999999999998888776665 445555443
No 15
>PRK00089 era GTPase Era; Reviewed
Probab=99.64 E-value=6.4e-15 Score=122.43 Aligned_cols=149 Identities=19% Similarity=0.252 Sum_probs=98.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
..|+|+|++|||||||+|.|+|....... ..+.+|+......... .+..+.++||||+.... ..+...+......
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~~~vs-~~~~tt~~~i~~i~~~-~~~qi~~iDTPG~~~~~---~~l~~~~~~~~~~ 80 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKISIVS-PKPQTTRHRIRGIVTE-DDAQIIFVDTPGIHKPK---RALNRAMNKAAWS 80 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCceeecC-CCCCcccccEEEEEEc-CCceEEEEECCCCCCch---hHHHHHHHHHHHH
Confidence 38999999999999999999998765442 3444454433322222 45688999999997643 3344555555566
Q ss_pred hcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhh--H-------HHHHhhc--cchhhhhhhhHhhH
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRG--A-------TELRDQQ--AEVDSLKEYSKQEI 167 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~--~-------~~l~~~~--~~i~~is~~~~~~i 167 (231)
.+..+|++++++|+++.++..+.. .....|.+ .++|++|.. . ..+.... .+++++|+.++.|+
T Consensus 81 ~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvi-lVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv 159 (292)
T PRK00089 81 SLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVI-LVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNV 159 (292)
T ss_pred HHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEE-EEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCH
Confidence 678899999999998666665544 11123443 334444321 0 1222222 36778999999999
Q ss_pred HHHHHHHHHHH
Q 038053 168 SKLMGQMQESY 178 (231)
Q Consensus 168 ~~l~~~i~~~~ 178 (231)
+.++..+....
T Consensus 160 ~~L~~~L~~~l 170 (292)
T PRK00089 160 DELLDVIAKYL 170 (292)
T ss_pred HHHHHHHHHhC
Confidence 99999887754
No 16
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.63 E-value=1e-14 Score=125.11 Aligned_cols=148 Identities=18% Similarity=0.184 Sum_probs=98.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhh
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLA 104 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~ 104 (231)
-|+|||+||||||||||+|++.... . ...+.+|+....+.........+.++||||+.........+...++. .
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~-v-s~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~----~ 234 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPK-V-ADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLK----H 234 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCccc-c-cCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHH----H
Confidence 6999999999999999999998652 2 35677888777777666334568999999998755443445555544 3
Q ss_pred cCCccEEEEEEECCCCCC---H-HHHH------hc-----CCCCcHHHHHHHHHhhH--------HHHHhhcc---chhh
Q 038053 105 KGGIHAVLVVFSVRSRFS---Q-EEEA------AN-----GGQPYTDEFLAELKRGA--------TELRDQQA---EVDS 158 (231)
Q Consensus 105 ~~~~~~il~vvd~~~~~~---~-~~~~------~~-----~~~~~~~~~~~~~~~~~--------~~l~~~~~---~i~~ 158 (231)
+.+++++++|+|++ .++ . .+.. .. ...|.+ .+++++|... ..+..... ++++
T Consensus 235 i~radvlL~VVD~s-~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~I-lVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ 312 (390)
T PRK12298 235 LERCRVLLHLIDIA-PIDGSDPVENARIIINELEKYSPKLAEKPRW-LVFNKIDLLDEEEAEERAKAIVEALGWEGPVYL 312 (390)
T ss_pred HHhCCEEEEEeccC-cccccChHHHHHHHHHHHHhhhhhhcCCCEE-EEEeCCccCChHHHHHHHHHHHHHhCCCCCEEE
Confidence 46779999999987 221 1 1111 11 123443 3445544210 12222222 5788
Q ss_pred hhhhhHhhHHHHHHHHHHHHHH
Q 038053 159 LKEYSKQEISKLMGQMQESYED 180 (231)
Q Consensus 159 is~~~~~~i~~l~~~i~~~~~~ 180 (231)
+||+++.++++++..+.+.+.+
T Consensus 313 ISA~tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 313 ISAASGLGVKELCWDLMTFIEE 334 (390)
T ss_pred EECCCCcCHHHHHHHHHHHhhh
Confidence 9999999999999999887654
No 17
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=1.6e-15 Score=129.15 Aligned_cols=159 Identities=14% Similarity=0.097 Sum_probs=107.4
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHH
Q 038053 18 SSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEI 97 (231)
Q Consensus 18 i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~ 97 (231)
+.+| ..|+|+|+||+|||||+|+|+..+..+++ ..+|+|++.....+.. ++..++++||+|+.. ...+.+...-
T Consensus 265 lq~g--l~iaIvGrPNvGKSSLlNaL~~~drsIVS-pv~GTTRDaiea~v~~-~G~~v~L~DTAGiRe--~~~~~iE~~g 338 (531)
T KOG1191|consen 265 LQSG--LQIAIVGRPNVGKSSLLNALSREDRSIVS-PVPGTTRDAIEAQVTV-NGVPVRLSDTAGIRE--ESNDGIEALG 338 (531)
T ss_pred hhcC--CeEEEEcCCCCCHHHHHHHHhcCCceEeC-CCCCcchhhheeEeec-CCeEEEEEecccccc--ccCChhHHHh
Confidence 4567 89999999999999999999999998885 6788998887776765 999999999999987 2223344444
Q ss_pred HHHHhhhcCCccEEEEEEECCCCCCHHHHH----------------hcCCCCcHHHHHHHHHhhH----------HHHHh
Q 038053 98 VKRIGLAKGGIHAVLVVFSVRSRFSQEEEA----------------ANGGQPYTDEFLAELKRGA----------TELRD 151 (231)
Q Consensus 98 ~~~~~~~~~~~~~il~vvd~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~----------~~l~~ 151 (231)
+......+.++|++++|+|+...++..+.. ....+...+.+.++.+-.. ..+..
T Consensus 339 I~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~ 418 (531)
T KOG1191|consen 339 IERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSA 418 (531)
T ss_pred HHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecccc
Confidence 555666778999999999994333333322 0011111112223322100 00111
Q ss_pred ----hccchhhhhhhhHhhHHHHHHHHHHHHHHHH
Q 038053 152 ----QQAEVDSLKEYSKQEISKLMGQMQESYEDQI 182 (231)
Q Consensus 152 ----~~~~i~~is~~~~~~i~~l~~~i~~~~~~~~ 182 (231)
..+.+..+|+.+++|+++|...+.+.+....
T Consensus 419 ~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~ 453 (531)
T KOG1191|consen 419 EGRSVFPIVVEVSCTTKEGCERLSTALLNIVERLV 453 (531)
T ss_pred ccCcccceEEEeeechhhhHHHHHHHHHHHHHHhh
Confidence 2223444788999999999999988775443
No 18
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.62 E-value=9.6e-15 Score=122.95 Aligned_cols=149 Identities=17% Similarity=0.186 Sum_probs=98.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
.-|+|||.||||||||||+|++....+ ...+.+|..+..+.........+.++|+||+.........+...+++++
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~v--a~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhi-- 234 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKI--ADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHI-- 234 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCcc--CCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHh--
Confidence 459999999999999999999976432 3566778877777666535567999999999875544444555555443
Q ss_pred hcCCccEEEEEEECCCCCCHHHHH--------hc---CCCCcHHHHHHHHHhhH------HHHH---hhc-cchhhhhhh
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEEEA--------AN---GGQPYTDEFLAELKRGA------TELR---DQQ-AEVDSLKEY 162 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~~~--------~~---~~~~~~~~~~~~~~~~~------~~l~---~~~-~~i~~is~~ 162 (231)
.+++++++|+|+++.-+.++.. .. ...|++ .++|++|... ..+. ... .+++++||+
T Consensus 235 --e~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~I-IV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAk 311 (335)
T PRK12299 235 --ERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRI-LVLNKIDLLDEEEEREKRAALELAALGGPVFLISAV 311 (335)
T ss_pred --hhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeE-EEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcC
Confidence 5679999999998432222222 11 123433 3445544210 0111 112 267889999
Q ss_pred hHhhHHHHHHHHHHHHH
Q 038053 163 SKQEISKLMGQMQESYE 179 (231)
Q Consensus 163 ~~~~i~~l~~~i~~~~~ 179 (231)
++.|+++++..+.+.+.
T Consensus 312 tg~GI~eL~~~L~~~l~ 328 (335)
T PRK12299 312 TGEGLDELLRALWELLE 328 (335)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999988877543
No 19
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.62 E-value=1e-14 Score=104.65 Aligned_cols=90 Identities=27% Similarity=0.355 Sum_probs=63.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhh
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLA 104 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~ 104 (231)
+|+|+|++|+|||||+|+|+|......+ ..+++|.......... .+..+.++||||+.+....... ...+...+..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~-~~~~~T~~~~~~~~~~-~~~~~~~vDtpG~~~~~~~~~~-~~~~~~~~~~- 76 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVS-NIPGTTRDPVYGQFEY-NNKKFILVDTPGINDGESQDND-GKEIRKFLEQ- 76 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEES-SSTTSSSSEEEEEEEE-TTEEEEEEESSSCSSSSHHHHH-HHHHHHHHHH-
T ss_pred CEEEECCCCCCHHHHHHHHhcccccccc-ccccceeeeeeeeeee-ceeeEEEEeCCCCcccchhhHH-HHHHHHHHHH-
Confidence 5899999999999999999997544443 4566776664444444 7788889999999874322111 1223333333
Q ss_pred cCCccEEEEEEECC
Q 038053 105 KGGIHAVLVVFSVR 118 (231)
Q Consensus 105 ~~~~~~il~vvd~~ 118 (231)
...+|++++|+|+.
T Consensus 77 ~~~~d~ii~vv~~~ 90 (116)
T PF01926_consen 77 ISKSDLIIYVVDAS 90 (116)
T ss_dssp HCTESEEEEEEETT
T ss_pred HHHCCEEEEEEECC
Confidence 38889999999976
No 20
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.62 E-value=3.4e-14 Score=108.91 Aligned_cols=150 Identities=17% Similarity=0.229 Sum_probs=98.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCc-cccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCc---hHHHHHHH
Q 038053 23 KRTVVLLGRTGNGKSATGNSILGRKA-FKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGS---EFVGKEIV 98 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~---~~~~~~~~ 98 (231)
...|+++|++|+|||||||+|+|... +.+ ...||.|......... ..++++|.||+....-.. +.+...+.
T Consensus 24 ~~EIaF~GRSNVGKSSlIN~l~~~k~LArt-SktPGrTq~iNff~~~----~~~~lVDlPGYGyAkv~k~~~e~w~~~i~ 98 (200)
T COG0218 24 LPEIAFAGRSNVGKSSLINALTNQKNLART-SKTPGRTQLINFFEVD----DELRLVDLPGYGYAKVPKEVKEKWKKLIE 98 (200)
T ss_pred CcEEEEEccCcccHHHHHHHHhCCcceeec-CCCCCccceeEEEEec----CcEEEEeCCCcccccCCHHHHHHHHHHHH
Confidence 37899999999999999999999662 333 4789999877665542 227899999987543222 22222233
Q ss_pred HHHhhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhhH--------HHHHhhcc-----c--hhh
Q 038053 99 KRIGLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRGA--------TELRDQQA-----E--VDS 158 (231)
Q Consensus 99 ~~~~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~--------~~l~~~~~-----~--i~~ 158 (231)
.++ ........+++++|+...+.+.|+. ...+.++. ++++++|+-. ..+.+.+. . +..
T Consensus 99 ~YL-~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~-vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~~~ 176 (200)
T COG0218 99 EYL-EKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVI-VVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWVVL 176 (200)
T ss_pred HHH-hhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeE-EEEEccccCChhHHHHHHHHHHHHhcCCCCccceEEE
Confidence 333 3334578999999999888888876 23344444 4455555211 12222221 1 566
Q ss_pred hhhhhHhhHHHHHHHHHHHHH
Q 038053 159 LKEYSKQEISKLMGQMQESYE 179 (231)
Q Consensus 159 is~~~~~~i~~l~~~i~~~~~ 179 (231)
.|+..+.|++++...+.+.+.
T Consensus 177 ~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 177 FSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred EecccccCHHHHHHHHHHHhh
Confidence 788889999999888877543
No 21
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.62 E-value=8e-16 Score=124.50 Aligned_cols=154 Identities=19% Similarity=0.205 Sum_probs=109.4
Q ss_pred cccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHH
Q 038053 14 WKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFV 93 (231)
Q Consensus 14 ~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~ 93 (231)
+.+.+..= .-|+|||.||||||||+|+|+.....+ .++..+|..+..+.........+.+.|.||+......+..+
T Consensus 189 ~~lELKsi--advGLVG~PNAGKSTLL~als~AKpkV--a~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGl 264 (366)
T KOG1489|consen 189 IELELKSI--ADVGLVGFPNAGKSTLLNALSRAKPKV--AHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGL 264 (366)
T ss_pred EEEEeeee--cccceecCCCCcHHHHHHHhhccCCcc--cccceeeeccccceeeccccceeEeccCccccccccccCcc
Confidence 34444444 569999999999999999999998743 35777777777776666344559999999999999888899
Q ss_pred HHHHHHHHhhhcCCccEEEEEEECCCC-----CCHHHHH---------hcCCCCcHHHHHHHHHh-hH-----HHHHhhc
Q 038053 94 GKEIVKRIGLAKGGIHAVLVVFSVRSR-----FSQEEEA---------ANGGQPYTDEFLAELKR-GA-----TELRDQQ 153 (231)
Q Consensus 94 ~~~~~~~~~~~~~~~~~il~vvd~~~~-----~~~~~~~---------~~~~~~~~~~~~~~~~~-~~-----~~l~~~~ 153 (231)
+..+++++..+ +.+++|+|++.. |+....- ....+|.+ .+++++|. ++ .+|..++
T Consensus 265 G~~FLrHiER~----~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~l-iVaNKiD~~eae~~~l~~L~~~l 339 (366)
T KOG1489|consen 265 GYKFLRHIERC----KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPAL-IVANKIDLPEAEKNLLSSLAKRL 339 (366)
T ss_pred cHHHHHHHHhh----ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceE-EEEeccCchhHHHHHHHHHHHHc
Confidence 99999887655 899999999833 2221111 22233333 45566553 22 2344444
Q ss_pred c-c-hhhhhhhhHhhHHHHHHHHHH
Q 038053 154 A-E-VDSLKEYSKQEISKLMGQMQE 176 (231)
Q Consensus 154 ~-~-i~~is~~~~~~i~~l~~~i~~ 176 (231)
. + |+++||++++++..++..+..
T Consensus 340 q~~~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 340 QNPHVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred CCCcEEEeeeccccchHHHHHHHhh
Confidence 3 3 889999999999999887754
No 22
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.61 E-value=3.6e-15 Score=130.30 Aligned_cols=148 Identities=22% Similarity=0.314 Sum_probs=105.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhh
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLA 104 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~ 104 (231)
+|+|+|++|+|||||+|.|+|...... ...+++|++.......+ .+..+.++||||+.... ..+...+......+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~t~d~~~~~~~~-~~~~~~liDTpG~~~~~---~~~~~~~~~~~~~~ 75 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIV-SDTPGVTRDRKYGDAEW-GGREFILIDTGGIEEDD---DGLDKQIREQAEIA 75 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCccee-cCCCCcccCceEEEEEE-CCeEEEEEECCCCCCcc---hhHHHHHHHHHHHH
Confidence 489999999999999999999875444 35678888877777777 78889999999986421 33445555556666
Q ss_pred cCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhhH-----HHHHh-hccchhhhhhhhHhhHHHHHHH
Q 038053 105 KGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRGA-----TELRD-QQAEVDSLKEYSKQEISKLMGQ 173 (231)
Q Consensus 105 ~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-----~~l~~-~~~~i~~is~~~~~~i~~l~~~ 173 (231)
+..+|++++|+|+.++++..+.. .....|++ .++++.+... .++.. .+.+++.+|+.+|.|+.++++.
T Consensus 76 ~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~pii-lVvNK~D~~~~~~~~~~~~~lg~~~~~~vSa~~g~gv~~ll~~ 154 (429)
T TIGR03594 76 IEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVI-LVANKIDGKKEDAVAAEFYSLGFGEPIPISAEHGRGIGDLLDA 154 (429)
T ss_pred HhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEE-EEEECccCCcccccHHHHHhcCCCCeEEEeCCcCCChHHHHHH
Confidence 78899999999998788877654 22344444 3445544211 12221 2236788999999999999888
Q ss_pred HHHHH
Q 038053 174 MQESY 178 (231)
Q Consensus 174 i~~~~ 178 (231)
+...+
T Consensus 155 i~~~l 159 (429)
T TIGR03594 155 ILELL 159 (429)
T ss_pred HHHhc
Confidence 77654
No 23
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.60 E-value=4.4e-15 Score=125.88 Aligned_cols=147 Identities=18% Similarity=0.162 Sum_probs=95.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
..|+|+|++|||||||+|+|+|..... .+.++.|.+..........+..+.++||||+....+ ..+.+.+...+ .
T Consensus 190 ~~ValvG~~NvGKSSLln~L~~~~~~v--~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~--~~lie~f~~tl-e 264 (351)
T TIGR03156 190 PTVALVGYTNAGKSTLFNALTGADVYA--ADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLP--HELVAAFRATL-E 264 (351)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCceee--ccCCccccCCEEEEEEeCCCceEEEEecCcccccCC--HHHHHHHHHHH-H
Confidence 789999999999999999999987432 245566766655555554567899999999954221 23333343332 3
Q ss_pred hcCCccEEEEEEECCCCCCHHHHH--------hc-CCCCcHHHHHHHHHhhH-HHHH---hhccchhhhhhhhHhhHHHH
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEEEA--------AN-GGQPYTDEFLAELKRGA-TELR---DQQAEVDSLKEYSKQEISKL 170 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~~-~~l~---~~~~~i~~is~~~~~~i~~l 170 (231)
....+|++++|+|+++.....+.. .. ...|++ .++|++|... ..+. ....+++.+|+++|.|++++
T Consensus 265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piI-lV~NK~Dl~~~~~v~~~~~~~~~~i~iSAktg~GI~eL 343 (351)
T TIGR03156 265 EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQL-LVYNKIDLLDEPRIERLEEGYPEAVFVSAKTGEGLDLL 343 (351)
T ss_pred HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEE-EEEEeecCCChHhHHHHHhCCCCEEEEEccCCCCHHHH
Confidence 457889999999998654443321 11 133443 4556655211 1121 11124678999999999999
Q ss_pred HHHHHH
Q 038053 171 MGQMQE 176 (231)
Q Consensus 171 ~~~i~~ 176 (231)
+..+.+
T Consensus 344 ~~~I~~ 349 (351)
T TIGR03156 344 LEAIAE 349 (351)
T ss_pred HHHHHh
Confidence 888765
No 24
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.60 E-value=9.3e-15 Score=129.16 Aligned_cols=72 Identities=26% Similarity=0.296 Sum_probs=56.1
Q ss_pred CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeC
Q 038053 1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDT 80 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dt 80 (231)
+++.|+++.+|+++++++.+| .+|||||+||+|||||+++|+|... ++.|.++... .-+..++.|.
T Consensus 9 ls~~~g~~~l~~~~~l~~~~G--~riGLvG~NGaGKSTLLkilaG~~~----~~~G~i~~~~--------~~~v~~l~Q~ 74 (530)
T COG0488 9 LSLAYGDRPLLENVSLTLNPG--ERIGLVGRNGAGKSTLLKILAGELE----PDSGEVTRPK--------GLRVGYLSQE 74 (530)
T ss_pred eEEeeCCceeecCCcceeCCC--CEEEEECCCCCCHHHHHHHHcCCCc----CCCCeEeecC--------CceEEEeCCC
Confidence 467899999999999999999 9999999999999999999999997 4455444422 1234455565
Q ss_pred CCCcCC
Q 038053 81 PGLFDS 86 (231)
Q Consensus 81 pg~~~~ 86 (231)
|.+++.
T Consensus 75 ~~~~~~ 80 (530)
T COG0488 75 PPLDPE 80 (530)
T ss_pred CCcCCC
Confidence 555543
No 25
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.60 E-value=8.5e-15 Score=109.80 Aligned_cols=148 Identities=21% Similarity=0.250 Sum_probs=96.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
.+|+++|++|+|||||+|+|++...... ...+++|.......... .+..+.++||||+.+.... ...........
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~---~~~~~~~~~~~ 76 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIV-SDIAGTTRDVIEESIDI-GGIPVRLIDTAGIRETEDE---IEKIGIERARE 76 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEec-cCCCCCccceEEEEEEe-CCEEEEEEECCCcCCCcch---HHHHHHHHHHH
Confidence 6899999999999999999999874333 23555665544444444 5678899999998764321 22222222334
Q ss_pred hcCCccEEEEEEECCCCCCHHHHH---hcCCCCcHHHHHHHHHhhH-HHH--HhhccchhhhhhhhHhhHHHHHHHHHHH
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEEEA---ANGGQPYTDEFLAELKRGA-TEL--RDQQAEVDSLKEYSKQEISKLMGQMQES 177 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~l--~~~~~~i~~is~~~~~~i~~l~~~i~~~ 177 (231)
....+|++++|+|+++..+..+.. .....|. +.+++++|... ... .....+++.+|+.++.+++.+++.+...
T Consensus 77 ~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~v-i~v~nK~D~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 155 (157)
T cd04164 77 AIEEADLVLFVIDASRGLDEEDLEILELPADKPI-IVVLNKSDLLPDSELLSLLAGKPIIAISAKTGEGLDELKEALLEL 155 (157)
T ss_pred HHhhCCEEEEEEECCCCCCHHHHHHHHhhcCCCE-EEEEEchhcCCccccccccCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 456889999999999666665544 1223333 35667766211 011 1112267889999999999998887653
No 26
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.60 E-value=2.3e-14 Score=132.05 Aligned_cols=166 Identities=21% Similarity=0.214 Sum_probs=109.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHH--H
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKR--I 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~--~ 101 (231)
.+|+|+|++|||||||+|.|++...... ...+++|++........ .+..+.++||||+....... .+.+.... .
T Consensus 451 ~kI~ivG~~nvGKSSLin~l~~~~~~~v-~~~~gtT~d~~~~~~~~-~~~~~~liDTaG~~~~~~~~--~~~e~~~~~r~ 526 (712)
T PRK09518 451 RRVALVGRPNVGKSSLLNQLTHEERAVV-NDLAGTTRDPVDEIVEI-DGEDWLFIDTAGIKRRQHKL--TGAEYYSSLRT 526 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCcccccc-CCCCCCCcCcceeEEEE-CCCEEEEEECCCcccCcccc--hhHHHHHHHHH
Confidence 6999999999999999999999875333 24667777655444444 67778899999986433221 12222222 1
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhh----H----HHHHhhc-----cchhhhhhhh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRG----A----TELRDQQ-----AEVDSLKEYS 163 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~----~----~~l~~~~-----~~i~~is~~~ 163 (231)
..++..+|++++|+|++++++..+.. ...+.|++ .++|++|.. . ..+...+ .++.++||++
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piI-iV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAkt 605 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALV-LVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAKT 605 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECCC
Confidence 23457899999999999888877654 22344444 333443310 0 1222222 1567789999
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 038053 164 KQEISKLMGQMQESYEDQIKRITE-MVESELK 194 (231)
Q Consensus 164 ~~~i~~l~~~i~~~~~~~~~~~~~-~~~~~~~ 194 (231)
|.|+.+++..+.+.+..+.+++.+ .+++.++
T Consensus 606 g~gv~~L~~~i~~~~~~~~~~i~T~~Ln~~l~ 637 (712)
T PRK09518 606 GWHTNRLAPAMQEALESWDQRIPTGKLNAFLG 637 (712)
T ss_pred CCCHHHHHHHHHHHHHHhcccCChHHHHHHHH
Confidence 999999999999988877766554 4444443
No 27
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.60 E-value=4.2e-15 Score=129.96 Aligned_cols=159 Identities=17% Similarity=0.139 Sum_probs=104.7
Q ss_pred cccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHH
Q 038053 14 WKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFV 93 (231)
Q Consensus 14 ~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~ 93 (231)
+.|.+..- -.|+|||.||||||||||.|++....+ ...+++|+.+....+.. .+..+.++|+||+.+.......+
T Consensus 152 ~~leLk~~--adV~LVG~PNAGKSTLln~Ls~akpkI--adypfTTl~P~lGvv~~-~~~~f~laDtPGliegas~g~gL 226 (500)
T PRK12296 152 LVLELKSV--ADVGLVGFPSAGKSSLISALSAAKPKI--ADYPFTTLVPNLGVVQA-GDTRFTVADVPGLIPGASEGKGL 226 (500)
T ss_pred EEEEeccc--ceEEEEEcCCCCHHHHHHHHhcCCccc--cccCcccccceEEEEEE-CCeEEEEEECCCCccccchhhHH
Confidence 34444444 579999999999999999999986533 35677787777776666 66789999999998755444445
Q ss_pred HHHHHHHHhhhcCCccEEEEEEECCC------CCCHHHHH------hc------------CCCCcHHHHHHHHHhhH---
Q 038053 94 GKEIVKRIGLAKGGIHAVLVVFSVRS------RFSQEEEA------AN------------GGQPYTDEFLAELKRGA--- 146 (231)
Q Consensus 94 ~~~~~~~~~~~~~~~~~il~vvd~~~------~~~~~~~~------~~------------~~~~~~~~~~~~~~~~~--- 146 (231)
...++.+ +.+++++++|+|+++ .+.+.+.. .. ...|.+ .++|++|...
T Consensus 227 g~~fLrh----ieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~I-VVlNKiDL~da~e 301 (500)
T PRK12296 227 GLDFLRH----IERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRL-VVLNKIDVPDARE 301 (500)
T ss_pred HHHHHHH----HHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEE-EEEECccchhhHH
Confidence 5555443 366799999999963 12222111 11 124443 3445544210
Q ss_pred --HHHHhhc----cchhhhhhhhHhhHHHHHHHHHHHHHHHH
Q 038053 147 --TELRDQQ----AEVDSLKEYSKQEISKLMGQMQESYEDQI 182 (231)
Q Consensus 147 --~~l~~~~----~~i~~is~~~~~~i~~l~~~i~~~~~~~~ 182 (231)
..+...+ -+++.+|+.++.|+.+|+..+.+.+....
T Consensus 302 l~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 302 LAEFVRPELEARGWPVFEVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred HHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence 1112111 26888999999999999999888765543
No 28
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.59 E-value=8.3e-15 Score=129.24 Aligned_cols=149 Identities=21% Similarity=0.277 Sum_probs=102.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
.+|+|||++|||||||+|.|+|...... ...+++|++.......+ .+..+.++||||+.... ..+...+......
T Consensus 39 ~~V~IvG~~nvGKSSL~nrl~~~~~~~v-~~~~gvT~d~~~~~~~~-~~~~~~l~DT~G~~~~~---~~~~~~~~~~~~~ 113 (472)
T PRK03003 39 PVVAVVGRPNVGKSTLVNRILGRREAVV-EDVPGVTRDRVSYDAEW-NGRRFTVVDTGGWEPDA---KGLQASVAEQAEV 113 (472)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCcCcccc-cCCCCCCEeeEEEEEEE-CCcEEEEEeCCCcCCcc---hhHHHHHHHHHHH
Confidence 6899999999999999999999865444 35777887766666666 67788999999986321 2234445555555
Q ss_pred hcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhhH-----HHH-HhhccchhhhhhhhHhhHHHHHH
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRGA-----TEL-RDQQAEVDSLKEYSKQEISKLMG 172 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-----~~l-~~~~~~i~~is~~~~~~i~~l~~ 172 (231)
++..+|++++|+|++++.+..+.. .....|++ .++|++|... ..+ ...+...+++||.+|.|+.+++.
T Consensus 114 ~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~pii-lV~NK~Dl~~~~~~~~~~~~~g~~~~~~iSA~~g~gi~eL~~ 192 (472)
T PRK03003 114 AMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVI-LAANKVDDERGEADAAALWSLGLGEPHPVSALHGRGVGDLLD 192 (472)
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEECccCCccchhhHHHHhcCCCCeEEEEcCCCCCcHHHHH
Confidence 667899999999999777665543 22334444 4455554211 111 11222345799999999999998
Q ss_pred HHHHHH
Q 038053 173 QMQESY 178 (231)
Q Consensus 173 ~i~~~~ 178 (231)
.+...+
T Consensus 193 ~i~~~l 198 (472)
T PRK03003 193 AVLAAL 198 (472)
T ss_pred HHHhhc
Confidence 887654
No 29
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.59 E-value=1.1e-14 Score=125.78 Aligned_cols=149 Identities=17% Similarity=0.213 Sum_probs=99.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhh
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLA 104 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~ 104 (231)
-|+|||.||||||||||+|++....+ .+.+.+|..+..+......+..+.++|+||+.........+...++.++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kI--a~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhi--- 234 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKI--ANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHI--- 234 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCcc--ccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHH---
Confidence 79999999999999999999987533 2567778777777666533678999999999865444444555555443
Q ss_pred cCCccEEEEEEECCCC--CCH-HHHH--------h---cCCCCcHHHHHHHHHhh-----HHHHHhhcc-chhhhhhhhH
Q 038053 105 KGGIHAVLVVFSVRSR--FSQ-EEEA--------A---NGGQPYTDEFLAELKRG-----ATELRDQQA-EVDSLKEYSK 164 (231)
Q Consensus 105 ~~~~~~il~vvd~~~~--~~~-~~~~--------~---~~~~~~~~~~~~~~~~~-----~~~l~~~~~-~i~~is~~~~ 164 (231)
.+++++++|+|+++. -+. .+.. . ....|.+ .++|++|.. ...+...+. +++++|+.++
T Consensus 235 -er~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~I-VV~NK~DL~~~~e~l~~l~~~l~~~i~~iSA~tg 312 (424)
T PRK12297 235 -ERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQI-VVANKMDLPEAEENLEEFKEKLGPKVFPISALTG 312 (424)
T ss_pred -hhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEE-EEEeCCCCcCCHHHHHHHHHHhCCcEEEEeCCCC
Confidence 567999999999632 011 1111 1 1133443 445555421 123333332 6788999999
Q ss_pred hhHHHHHHHHHHHHHH
Q 038053 165 QEISKLMGQMQESYED 180 (231)
Q Consensus 165 ~~i~~l~~~i~~~~~~ 180 (231)
.|+++++..+.+.+..
T Consensus 313 eGI~eL~~~L~~~l~~ 328 (424)
T PRK12297 313 QGLDELLYAVAELLEE 328 (424)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999998776543
No 30
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.59 E-value=1.1e-14 Score=134.27 Aligned_cols=149 Identities=18% Similarity=0.183 Sum_probs=100.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCc--hHHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGS--EFVGKEIVKRI 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~--~~~~~~~~~~~ 101 (231)
.+|+++|+||||||||+|.|+|..... .+++++|++........ .+..+.++||||.++..... ....+.+...+
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~~v--gn~pGvTve~k~g~~~~-~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQRV--GNWAGVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcc--CCCCCceEeeEEEEEEc-CceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 589999999999999999999987643 25788998877666655 67789999999998754321 12233333222
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH----hcCCCCcHHHHHHHHHhh--------HHHHHhhcc-chhhhhhhhHhhHH
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA----ANGGQPYTDEFLAELKRG--------ATELRDQQA-EVDSLKEYSKQEIS 168 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--------~~~l~~~~~-~i~~is~~~~~~i~ 168 (231)
. ....+|++++|+|+++ ....... ...+.|.+ .++|++|.. .+.+.+.++ +++++|+.++.|++
T Consensus 81 l-~~~~aD~vI~VvDat~-ler~l~l~~ql~e~giPvI-vVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~~g~GId 157 (772)
T PRK09554 81 I-LSGDADLLINVVDASN-LERNLYLTLQLLELGIPCI-VALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTRGRGIE 157 (772)
T ss_pred H-hccCCCEEEEEecCCc-chhhHHHHHHHHHcCCCEE-EEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEeecCCCHH
Confidence 2 2367899999999984 2221111 23344544 333444321 134555554 88889999999999
Q ss_pred HHHHHHHHHH
Q 038053 169 KLMGQMQESY 178 (231)
Q Consensus 169 ~l~~~i~~~~ 178 (231)
++.+.+....
T Consensus 158 eL~~~I~~~~ 167 (772)
T PRK09554 158 ALKLAIDRHQ 167 (772)
T ss_pred HHHHHHHHhh
Confidence 9999987753
No 31
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.58 E-value=2.6e-14 Score=125.13 Aligned_cols=154 Identities=23% Similarity=0.287 Sum_probs=101.9
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHH
Q 038053 19 SSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIV 98 (231)
Q Consensus 19 ~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~ 98 (231)
.++ .+|+++|++|+|||||+|.|++...... ...+++|.+........ .+..+.++||||+.+.. ..+...-.
T Consensus 213 ~~~--~kV~ivG~~nvGKSSLln~L~~~~~a~v-~~~~gtT~d~~~~~i~~-~g~~i~l~DT~G~~~~~---~~ie~~gi 285 (449)
T PRK05291 213 REG--LKVVIAGRPNVGKSSLLNALLGEERAIV-TDIAGTTRDVIEEHINL-DGIPLRLIDTAGIRETD---DEVEKIGI 285 (449)
T ss_pred hcC--CEEEEECCCCCCHHHHHHHHhCCCCccc-CCCCCcccccEEEEEEE-CCeEEEEEeCCCCCCCc---cHHHHHHH
Confidence 456 8999999999999999999999875433 24667776655555555 67788999999986422 22222112
Q ss_pred HHHhhhcCCccEEEEEEECCCCCCHHHHH---hcCCCCcHHHHHHHHHhhH-HHHHh-hccchhhhhhhhHhhHHHHHHH
Q 038053 99 KRIGLAKGGIHAVLVVFSVRSRFSQEEEA---ANGGQPYTDEFLAELKRGA-TELRD-QQAEVDSLKEYSKQEISKLMGQ 173 (231)
Q Consensus 99 ~~~~~~~~~~~~il~vvd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~l~~-~~~~i~~is~~~~~~i~~l~~~ 173 (231)
.........+|++++|+|++++.+..+.. .....|.+ .++|+.|... ..... ...+++.+|+++|.|++.+++.
T Consensus 286 ~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~~~~~pii-iV~NK~DL~~~~~~~~~~~~~~i~iSAktg~GI~~L~~~ 364 (449)
T PRK05291 286 ERSREAIEEADLVLLVLDASEPLTEEDDEILEELKDKPVI-VVLNKADLTGEIDLEEENGKPVIRISAKTGEGIDELREA 364 (449)
T ss_pred HHHHHHHHhCCEEEEEecCCCCCChhHHHHHHhcCCCCcE-EEEEhhhccccchhhhccCCceEEEEeeCCCCHHHHHHH
Confidence 22233457889999999998666554433 11233443 5667766211 01111 1125678999999999999999
Q ss_pred HHHHHHH
Q 038053 174 MQESYED 180 (231)
Q Consensus 174 i~~~~~~ 180 (231)
+.+....
T Consensus 365 L~~~l~~ 371 (449)
T PRK05291 365 IKELAFG 371 (449)
T ss_pred HHHHHhh
Confidence 9887644
No 32
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.57 E-value=4.9e-14 Score=107.26 Aligned_cols=152 Identities=22% Similarity=0.272 Sum_probs=92.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053 23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG 102 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~ 102 (231)
+.+|+++|.+|+|||||+|+|++...... ...+++|.......... .+..+.++||||+.........+.........
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIV-SDIAGTTRDSIDVPFEY-DGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceec-cCCCCCccCceeeEEEE-CCeeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 47899999999999999999999864332 23444554443333333 56678899999987643222222111111122
Q ss_pred hhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhh----------HHHHHhhc-----cchhhhhhh
Q 038053 103 LAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRG----------ATELRDQQ-----AEVDSLKEY 162 (231)
Q Consensus 103 ~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~----------~~~l~~~~-----~~i~~is~~ 162 (231)
.....+|.+++|+|+.+..+..... .....|.+ .++++.|.. .+.+...+ .+++.+|++
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~i-iv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 158 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALV-IVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISAL 158 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEE-EEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEecc
Confidence 3446889999999998766655433 11233333 233333210 02333333 267778999
Q ss_pred hHhhHHHHHHHHHHH
Q 038053 163 SKQEISKLMGQMQES 177 (231)
Q Consensus 163 ~~~~i~~l~~~i~~~ 177 (231)
.+.|+..++..+...
T Consensus 159 ~~~~i~~~~~~l~~~ 173 (174)
T cd01895 159 TGQGVDKLFDAIDEV 173 (174)
T ss_pred CCCCHHHHHHHHHHh
Confidence 999999988887654
No 33
>PRK11058 GTPase HflX; Provisional
Probab=99.57 E-value=1.3e-14 Score=125.73 Aligned_cols=150 Identities=17% Similarity=0.111 Sum_probs=97.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
..|+|+|+||||||||||.|+|...+. .+.+++|.+.......+.....+.++||||++... ...+...+...+ .
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v--~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~l--p~~lve~f~~tl-~ 272 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYA--ADQLFATLDPTLRRIDVADVGETVLADTVGFIRHL--PHDLVAAFKATL-Q 272 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceee--ccCCCCCcCCceEEEEeCCCCeEEEEecCcccccC--CHHHHHHHHHHH-H
Confidence 589999999999999999999987653 24566777766555555334478899999996422 133334444433 3
Q ss_pred hcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhhH---HHHHh---hccchhhhhhhhHhhHH
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRGA---TELRD---QQAEVDSLKEYSKQEIS 168 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~---~~l~~---~~~~i~~is~~~~~~i~ 168 (231)
....+|++++|+|+++.....+.. .....|++ .++|++|... ..+.. ..+.++.+|+++|.|++
T Consensus 273 ~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvI-iV~NKiDL~~~~~~~~~~~~~~~~~~v~ISAktG~GId 351 (426)
T PRK11058 273 ETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTL-LVMNKIDMLDDFEPRIDRDEENKPIRVWLSAQTGAGIP 351 (426)
T ss_pred HhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEE-EEEEcccCCCchhHHHHHHhcCCCceEEEeCCCCCCHH
Confidence 447899999999998654333321 11233443 4556655211 01110 11123668999999999
Q ss_pred HHHHHHHHHHH
Q 038053 169 KLMGQMQESYE 179 (231)
Q Consensus 169 ~l~~~i~~~~~ 179 (231)
.|+..+...+.
T Consensus 352 eL~e~I~~~l~ 362 (426)
T PRK11058 352 LLFQALTERLS 362 (426)
T ss_pred HHHHHHHHHhh
Confidence 99999987653
No 34
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.56 E-value=1.1e-14 Score=109.18 Aligned_cols=144 Identities=22% Similarity=0.282 Sum_probs=91.7
Q ss_pred EEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhhcC
Q 038053 27 VLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKG 106 (231)
Q Consensus 27 ~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~ 106 (231)
+++|.+|+|||||+|.|++...... ...+++|.......... .+..+.++||||+..... .....+.........
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~-~~~~~~t~~~~~~~~~~-~~~~~~i~DtpG~~~~~~---~~~~~~~~~~~~~~~ 75 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIV-EDTPGVTRDRIYGEAEW-GGREFILIDTGGIEPDDE---GISKEIREQAELAIE 75 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEee-cCCCCceeCceeEEEEE-CCeEEEEEECCCCCCchh---HHHHHHHHHHHHHHH
Confidence 5899999999999999999864322 24555665555544544 667889999999986432 233334444444557
Q ss_pred CccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhhH-----HHHHhh-ccchhhhhhhhHhhHHHHHHHHH
Q 038053 107 GIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRGA-----TELRDQ-QAEVDSLKEYSKQEISKLMGQMQ 175 (231)
Q Consensus 107 ~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-----~~l~~~-~~~i~~is~~~~~~i~~l~~~i~ 175 (231)
.+|++++++|+.+.++..+.. .....|++ .+++++|... ..+... ..+++.+|++++.|+++++..+.
T Consensus 76 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~pii-iv~nK~D~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 154 (157)
T cd01894 76 EADVILFVVDGREGLTPADEEIAKYLRKSKKPVI-LVVNKVDNIKEEDEAAEFYSLGFGEPIPISAEHGRGIGDLLDAIL 154 (157)
T ss_pred hCCEEEEEEeccccCCccHHHHHHHHHhcCCCEE-EEEECcccCChHHHHHHHHhcCCCCeEEEecccCCCHHHHHHHHH
Confidence 789999999998655544432 11223333 3444444211 122221 22567899999999999988876
Q ss_pred H
Q 038053 176 E 176 (231)
Q Consensus 176 ~ 176 (231)
+
T Consensus 155 ~ 155 (157)
T cd01894 155 E 155 (157)
T ss_pred h
Confidence 5
No 35
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.55 E-value=1.8e-14 Score=126.12 Aligned_cols=147 Identities=22% Similarity=0.275 Sum_probs=101.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
.+|+|+|.+|+|||||+|.|+|...... ...+++|.+.......+ .+..+.++||||+.... ......+......
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v-~~~~~~t~d~~~~~~~~-~~~~~~liDT~G~~~~~---~~~~~~~~~~~~~ 76 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIV-ADTPGVTRDRIYGEAEW-LGREFILIDTGGIEPDD---DGFEKQIREQAEL 76 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceee-CCCCCCcccceEEEEEE-CCcEEEEEECCCCCCcc---hhHHHHHHHHHHH
Confidence 5799999999999999999999875444 35677887777666666 67889999999997622 2233444444555
Q ss_pred hcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhhH-----HHHHh-hccchhhhhhhhHhhHHHHHH
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRGA-----TELRD-QQAEVDSLKEYSKQEISKLMG 172 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-----~~l~~-~~~~i~~is~~~~~~i~~l~~ 172 (231)
++..+|++++|+|+.++++..+.. .....|++ .++|+.|... .++.. ....++.+|+.+|.|+.++++
T Consensus 77 ~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~pii-lv~NK~D~~~~~~~~~~~~~lg~~~~~~iSa~~g~gv~~l~~ 155 (435)
T PRK00093 77 AIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVI-LVVNKVDGPDEEADAYEFYSLGLGEPYPISAEHGRGIGDLLD 155 (435)
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEE-EEEECccCccchhhHHHHHhcCCCCCEEEEeeCCCCHHHHHH
Confidence 667899999999998777776543 12234443 3445544110 12211 122467789999999999988
Q ss_pred HHHH
Q 038053 173 QMQE 176 (231)
Q Consensus 173 ~i~~ 176 (231)
.+..
T Consensus 156 ~I~~ 159 (435)
T PRK00093 156 AILE 159 (435)
T ss_pred HHHh
Confidence 8876
No 36
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.54 E-value=5.2e-15 Score=117.01 Aligned_cols=85 Identities=20% Similarity=0.138 Sum_probs=68.5
Q ss_pred CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeC
Q 038053 1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDT 80 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dt 80 (231)
+++.|++..+|+|++|++.+| ..|+|+|++|||||||+|+|.|... ++.|.+....... .-+.....+++|.
T Consensus 9 v~~~f~~~~vl~~i~L~v~~G--EfvsilGpSGcGKSTLLriiAGL~~----p~~G~V~~~g~~v--~~p~~~~~~vFQ~ 80 (248)
T COG1116 9 VSKSFGGVEVLEDINLSVEKG--EFVAILGPSGCGKSTLLRLIAGLEK----PTSGEVLLDGRPV--TGPGPDIGYVFQE 80 (248)
T ss_pred eEEEeCceEEeccceeEECCC--CEEEEECCCCCCHHHHHHHHhCCCC----CCCceEEECCccc--CCCCCCEEEEecc
Confidence 367889999999999999999 9999999999999999999999998 4455444433222 1125677889999
Q ss_pred CCCcCCCCCchHH
Q 038053 81 PGLFDSSAGSEFV 93 (231)
Q Consensus 81 pg~~~~~~~~~~~ 93 (231)
+.++++.++.+++
T Consensus 81 ~~LlPW~Tv~~NV 93 (248)
T COG1116 81 DALLPWLTVLDNV 93 (248)
T ss_pred CcccchhhHHhhh
Confidence 9999988876654
No 37
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.53 E-value=2.5e-13 Score=114.28 Aligned_cols=147 Identities=19% Similarity=0.244 Sum_probs=94.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
..|+|||.||||||||+|+|++....+ ...+.+|..+............+.++|+||+.........+...+++++
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~v--a~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhi-- 233 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKI--ADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHI-- 233 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccc--cCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHH--
Confidence 469999999999999999999876432 2456677777776666523378999999999865443334555555443
Q ss_pred hcCCccEEEEEEECCCC-C-CH-HHHH--------hc---CCCCcHHHHHHHHHhhH--------HHHHhhcc-chhhhh
Q 038053 104 AKGGIHAVLVVFSVRSR-F-SQ-EEEA--------AN---GGQPYTDEFLAELKRGA--------TELRDQQA-EVDSLK 160 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~-~-~~-~~~~--------~~---~~~~~~~~~~~~~~~~~--------~~l~~~~~-~i~~is 160 (231)
.+++++++|+|+++. . .. .+.. .. ...|++ .++|++|... +.+.+... +++++|
T Consensus 234 --erad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~I-IV~NK~DL~~~~~~~~~~~~l~~~~~~~vi~iS 310 (329)
T TIGR02729 234 --ERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRI-VVLNKIDLLDEEELAELLKELKKALGKPVFPIS 310 (329)
T ss_pred --HhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEE-EEEeCccCCChHHHHHHHHHHHHHcCCcEEEEE
Confidence 567999999999842 1 11 1111 11 123443 3344443110 12222222 577899
Q ss_pred hhhHhhHHHHHHHHHHH
Q 038053 161 EYSKQEISKLMGQMQES 177 (231)
Q Consensus 161 ~~~~~~i~~l~~~i~~~ 177 (231)
++++.++++++..+.+.
T Consensus 311 Aktg~GI~eL~~~I~~~ 327 (329)
T TIGR02729 311 ALTGEGLDELLYALAEL 327 (329)
T ss_pred ccCCcCHHHHHHHHHHH
Confidence 99999999998887653
No 38
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.53 E-value=9.1e-14 Score=128.16 Aligned_cols=149 Identities=22% Similarity=0.299 Sum_probs=104.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
.+|+|+|++|+|||||+|.|+|...... ...+++|++.......+ .+..+.++||||+.... +.+...+......
T Consensus 276 ~~V~IvG~~nvGKSSL~n~l~~~~~~iv-~~~pGvT~d~~~~~~~~-~~~~~~liDT~G~~~~~---~~~~~~~~~~~~~ 350 (712)
T PRK09518 276 GVVAIVGRPNVGKSTLVNRILGRREAVV-EDTPGVTRDRVSYDAEW-AGTDFKLVDTGGWEADV---EGIDSAIASQAQI 350 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCeeEEEEEEEEEE-CCEEEEEEeCCCcCCCC---ccHHHHHHHHHHH
Confidence 5799999999999999999999865444 35778888776666666 67789999999987422 2244455555556
Q ss_pred hcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhhH-----HHH-HhhccchhhhhhhhHhhHHHHHH
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRGA-----TEL-RDQQAEVDSLKEYSKQEISKLMG 172 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-----~~l-~~~~~~i~~is~~~~~~i~~l~~ 172 (231)
++..+|++++|+|++++++..+.. .....|++ .++|+.+... .++ ......++++||.+|.|+.++++
T Consensus 351 ~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvI-lV~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~GI~eLl~ 429 (712)
T PRK09518 351 AVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVV-LAVNKIDDQASEYDAAEFWKLGLGEPYPISAMHGRGVGDLLD 429 (712)
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEE-EEEECcccccchhhHHHHHHcCCCCeEEEECCCCCCchHHHH
Confidence 668899999999998777776653 22344444 3445544211 111 11223456799999999999998
Q ss_pred HHHHHH
Q 038053 173 QMQESY 178 (231)
Q Consensus 173 ~i~~~~ 178 (231)
.+...+
T Consensus 430 ~i~~~l 435 (712)
T PRK09518 430 EALDSL 435 (712)
T ss_pred HHHHhc
Confidence 887654
No 39
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.53 E-value=4.7e-13 Score=100.93 Aligned_cols=147 Identities=20% Similarity=0.289 Sum_probs=88.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
.+|+++|++|+|||||+|.|+|....... .....+.......... .+..+.++||||+...... ....+......
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~---~~~~~~~~~~~ 78 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQKISIVS-PKPQTTRNRIRGIYTD-DDAQIIFVDTPGIHKPKKK---LGERMVKAAWS 78 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCceEecc-CCCCceeceEEEEEEc-CCeEEEEEECCCCCcchHH---HHHHHHHHHHH
Confidence 68999999999999999999998754332 2223333222222222 4567889999998764321 12223333344
Q ss_pred hcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhh--H-------HHHHhhc--cchhhhhhhhHhhH
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRG--A-------TELRDQQ--AEVDSLKEYSKQEI 167 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~--~-------~~l~~~~--~~i~~is~~~~~~i 167 (231)
....+|.+++++|+++.+...+.. .....|.+ .++++.+.. . ..+.... .+++.+|++++.++
T Consensus 79 ~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~i-iv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 157 (168)
T cd04163 79 ALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVI-LVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENV 157 (168)
T ss_pred HHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEE-EEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence 557889999999998554443322 12223332 233443321 0 2333333 26677899999999
Q ss_pred HHHHHHHHH
Q 038053 168 SKLMGQMQE 176 (231)
Q Consensus 168 ~~l~~~i~~ 176 (231)
++++..+.+
T Consensus 158 ~~l~~~l~~ 166 (168)
T cd04163 158 DELLEEIVK 166 (168)
T ss_pred HHHHHHHHh
Confidence 998887754
No 40
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.52 E-value=3.2e-13 Score=117.79 Aligned_cols=153 Identities=16% Similarity=0.252 Sum_probs=95.3
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHH
Q 038053 19 SSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIV 98 (231)
Q Consensus 19 ~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~ 98 (231)
.++ .+|+|+|++|+|||||+|.|++...... ...+++|++.......+ .+..+.++||||+.... ..+...-.
T Consensus 201 ~~g--~kVvIvG~~nvGKSSLiN~L~~~~~aiv-s~~pgtTrd~~~~~i~~-~g~~v~l~DTaG~~~~~---~~ie~~gi 273 (442)
T TIGR00450 201 DDG--FKLAIVGSPNVGKSSLLNALLKQDRAIV-SDIKGTTRDVVEGDFEL-NGILIKLLDTAGIREHA---DFVERLGI 273 (442)
T ss_pred hcC--CEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcEEEEEEEEEEE-CCEEEEEeeCCCcccch---hHHHHHHH
Confidence 456 8999999999999999999999865444 35677777765555555 77888999999987532 11211111
Q ss_pred HHHhhhcCCccEEEEEEECCCCCCHHHHH----hcCCCCcHHHHHHHHHhhH---HHHHhhc-cchhhhhhhhHhhHHHH
Q 038053 99 KRIGLAKGGIHAVLVVFSVRSRFSQEEEA----ANGGQPYTDEFLAELKRGA---TELRDQQ-AEVDSLKEYSKQEISKL 170 (231)
Q Consensus 99 ~~~~~~~~~~~~il~vvd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~---~~l~~~~-~~i~~is~~~~~~i~~l 170 (231)
......+..+|++++|+|++++.+..+.. .....|++ .+.|+.|... ..+.... .+++.+|+++ .|++++
T Consensus 274 ~~~~~~~~~aD~il~V~D~s~~~s~~~~~l~~~~~~~~piI-lV~NK~Dl~~~~~~~~~~~~~~~~~~vSak~-~gI~~~ 351 (442)
T TIGR00450 274 EKSFKAIKQADLVIYVLDASQPLTKDDFLIIDLNKSKKPFI-LVLNKIDLKINSLEFFVSSKVLNSSNLSAKQ-LKIKAL 351 (442)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCChhHHHHHHHhhCCCCEE-EEEECccCCCcchhhhhhhcCCceEEEEEec-CCHHHH
Confidence 22234457889999999998666544322 11233433 4556655211 1221111 1456688887 466666
Q ss_pred HHHHHHHHHH
Q 038053 171 MGQMQESYED 180 (231)
Q Consensus 171 ~~~i~~~~~~ 180 (231)
++.+.....+
T Consensus 352 ~~~L~~~i~~ 361 (442)
T TIGR00450 352 VDLLTQKINA 361 (442)
T ss_pred HHHHHHHHHH
Confidence 6665554433
No 41
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.52 E-value=1.6e-13 Score=112.49 Aligned_cols=150 Identities=18% Similarity=0.217 Sum_probs=107.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhh
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLA 104 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~ 104 (231)
-|+|||-|||||||||+.++...+.+ .+.+.+|..+..+.+....+..+++.|.||+....+....++..+++++.++
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKI--adYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt 238 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKI--ADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERT 238 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcc--cCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhh
Confidence 48899999999999999999998754 3677778777777776546778999999999999888888999999988766
Q ss_pred cCCccEEEEEEECCCCCC----HHHHH-----------hcCCCCcHHHHHHHHHh-----hH----HHHHhhccchhh--
Q 038053 105 KGGIHAVLVVFSVRSRFS----QEEEA-----------ANGGQPYTDEFLAELKR-----GA----TELRDQQAEVDS-- 158 (231)
Q Consensus 105 ~~~~~~il~vvd~~~~~~----~~~~~-----------~~~~~~~~~~~~~~~~~-----~~----~~l~~~~~~i~~-- 158 (231)
.++++|||++ ... .++.. ....++. +.++++++. +. +.|.+.......
T Consensus 239 ----~vL~hviD~s-~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~-ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ 312 (369)
T COG0536 239 ----RVLLHVIDLS-PIDGRDPIEDYQTIRNELEKYSPKLAEKPR-IVVLNKIDLPLDEEELEELKKALAEALGWEVFYL 312 (369)
T ss_pred ----heeEEEEecC-cccCCCHHHHHHHHHHHHHHhhHHhccCce-EEEEeccCCCcCHHHHHHHHHHHHHhcCCCccee
Confidence 7999999997 332 12222 1122333 244555551 11 122222222212
Q ss_pred hhhhhHhhHHHHHHHHHHHHHHHH
Q 038053 159 LKEYSKQEISKLMGQMQESYEDQI 182 (231)
Q Consensus 159 is~~~~~~i~~l~~~i~~~~~~~~ 182 (231)
||+.++.|++.|+..+.+.+.+..
T Consensus 313 ISa~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 313 ISALTREGLDELLRALAELLEETK 336 (369)
T ss_pred eehhcccCHHHHHHHHHHHHHHhh
Confidence 899999999999999988766654
No 42
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.50 E-value=1.4e-13 Score=108.38 Aligned_cols=147 Identities=19% Similarity=0.207 Sum_probs=89.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
.+|+|+|++|||||||+|.|++...... ..+..|...............+.++||||+.+... ......+.... .
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~~~~-~ 116 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGADVYAE--DQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLP--HQLVEAFRSTL-E 116 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcchhccC--CccceeccceeEEEEecCCceEEEeCCCccccCCC--HHHHHHHHHHH-H
Confidence 6999999999999999999999864322 23344444444444442334788999999865321 12222222222 2
Q ss_pred hcCCccEEEEEEECCCCCCHHHHH--------hc-CCCCcHHHHHHHHHhhH-HH----HHhhccchhhhhhhhHhhHHH
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEEEA--------AN-GGQPYTDEFLAELKRGA-TE----LRDQQAEVDSLKEYSKQEISK 169 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~~-~~----l~~~~~~i~~is~~~~~~i~~ 169 (231)
....+|++++|+|+++.....+.. .. ...|++ .++|++|... .. +.....+++.+|++++.|++.
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~vi-iV~NK~Dl~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 195 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMI-LVLNKIDLLDDEELEERLEAGRPDAVFISAKTGEGLDE 195 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEE-EEEEccccCChHHHHHHhhcCCCceEEEEcCCCCCHHH
Confidence 346789999999998554433221 11 123333 4555655211 11 112223678899999999999
Q ss_pred HHHHHHH
Q 038053 170 LMGQMQE 176 (231)
Q Consensus 170 l~~~i~~ 176 (231)
++..+..
T Consensus 196 l~~~L~~ 202 (204)
T cd01878 196 LLEAIEE 202 (204)
T ss_pred HHHHHHh
Confidence 9887654
No 43
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.48 E-value=2.6e-13 Score=110.73 Aligned_cols=99 Identities=25% Similarity=0.213 Sum_probs=71.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
++|.+.|+||+|||||++.|++..+-+ .+.|.+|....+++.+. ....+.++||||+.+.-. .+...-+....++
T Consensus 169 pTivVaG~PNVGKSSlv~~lT~AkpEv--A~YPFTTK~i~vGhfe~-~~~R~QvIDTPGlLDRPl-~ErN~IE~qAi~A- 243 (346)
T COG1084 169 PTIVVAGYPNVGKSSLVRKLTTAKPEV--APYPFTTKGIHVGHFER-GYLRIQVIDTPGLLDRPL-EERNEIERQAILA- 243 (346)
T ss_pred CeEEEecCCCCcHHHHHHHHhcCCCcc--CCCCccccceeEeeeec-CCceEEEecCCcccCCCh-HHhcHHHHHHHHH-
Confidence 799999999999999999999998754 35677777778888777 788899999999976321 1211222222221
Q ss_pred hcCCccEEEEEEECC--CCCCHHHHH
Q 038053 104 AKGGIHAVLVVFSVR--SRFSQEEEA 127 (231)
Q Consensus 104 ~~~~~~~il~vvd~~--~~~~~~~~~ 127 (231)
...-.++|++++|++ |+++.++..
T Consensus 244 L~hl~~~IlF~~D~Se~cgy~lE~Q~ 269 (346)
T COG1084 244 LRHLAGVILFLFDPSETCGYSLEEQI 269 (346)
T ss_pred HHHhcCeEEEEEcCccccCCCHHHHH
Confidence 113457999999996 778877765
No 44
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.48 E-value=7.2e-13 Score=100.94 Aligned_cols=144 Identities=19% Similarity=0.213 Sum_probs=85.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCc-EEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQ-VVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
.|+|||++|||||||+|.|++.... . ...++.|.....+.... .+. .+.++||||+.........+...+. .
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~-v-~~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~----~ 74 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPK-I-ADYPFTTLVPNLGVVRV-DDGRSFVVADIPGLIEGASEGKGLGHRFL----R 74 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCcc-c-cCCCccccCCcceEEEc-CCCCeEEEEecCcccCcccccCCchHHHH----H
Confidence 4899999999999999999987642 1 12344555555444444 444 7889999998643222222222222 2
Q ss_pred hcCCccEEEEEEECCCC---CCHHHHH------hc---CCCCcHHHHHHHHHhhH--------HHHHhh--ccchhhhhh
Q 038053 104 AKGGIHAVLVVFSVRSR---FSQEEEA------AN---GGQPYTDEFLAELKRGA--------TELRDQ--QAEVDSLKE 161 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~---~~~~~~~------~~---~~~~~~~~~~~~~~~~~--------~~l~~~--~~~i~~is~ 161 (231)
....+|++++|+|+++. +...... .. ...|++ .++++.|... ..+... ..+++.+|+
T Consensus 75 ~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~i-vv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (170)
T cd01898 75 HIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRI-VVLNKIDLLDEEELFELLKELLKELWGKPVFPISA 153 (170)
T ss_pred HHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccE-EEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEec
Confidence 23567999999999854 1111111 10 123333 3444444210 112222 235778899
Q ss_pred hhHhhHHHHHHHHHH
Q 038053 162 YSKQEISKLMGQMQE 176 (231)
Q Consensus 162 ~~~~~i~~l~~~i~~ 176 (231)
+++.|+.+++..+.+
T Consensus 154 ~~~~gi~~l~~~i~~ 168 (170)
T cd01898 154 LTGEGLDELLRKLAE 168 (170)
T ss_pred CCCCCHHHHHHHHHh
Confidence 999999998877654
No 45
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.48 E-value=3.8e-14 Score=117.54 Aligned_cols=86 Identities=15% Similarity=0.119 Sum_probs=66.8
Q ss_pred CCCCCC-CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE--EeeCCcEEEE
Q 038053 1 MSSGMG-ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT--VLKDGQVVNV 77 (231)
Q Consensus 1 ~~~~~~-~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~l 77 (231)
++|.|+ ++.++++++|++++| ..+||+|+|||||||||++|+|... ++.|.+......... .......+++
T Consensus 10 l~k~~~~~~~~l~~vs~~i~~G--ei~gllG~NGAGKTTllk~l~gl~~----p~~G~i~i~G~~~~~~~~~~~~~igy~ 83 (293)
T COG1131 10 LTKKYGGDKTALDGVSFEVEPG--EIFGLLGPNGAGKTTLLKILAGLLK----PTSGEILVLGYDVVKEPAKVRRRIGYV 83 (293)
T ss_pred eEEEeCCCCEEEeceeEEEcCC--eEEEEECCCCCCHHHHHHHHhCCcC----CCceEEEEcCEeCccCHHHHHhheEEE
Confidence 468899 699999999999999 9999999999999999999999998 444544443322111 1114568999
Q ss_pred EeCCCCcCCCCCchH
Q 038053 78 IDTPGLFDSSAGSEF 92 (231)
Q Consensus 78 ~Dtpg~~~~~~~~~~ 92 (231)
++.|.+++..++.+.
T Consensus 84 ~~~~~~~~~lT~~e~ 98 (293)
T COG1131 84 PQEPSLYPELTVREN 98 (293)
T ss_pred ccCCCCCccccHHHH
Confidence 999999997765443
No 46
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.48 E-value=3e-13 Score=101.68 Aligned_cols=143 Identities=18% Similarity=0.207 Sum_probs=88.3
Q ss_pred EEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhhcCC
Q 038053 28 LLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGG 107 (231)
Q Consensus 28 lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (231)
|+|++|+|||||+|.++|..... ...+++|.........+ .+..+.++||||........ ....+...+... ..
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~--~~~~~~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~--~~~~~~~~~~~~-~~ 74 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKV--GNWPGVTVEKKEGRFKL-GGKEIEIVDLPGTYSLSPYS--EDEKVARDFLLG-EK 74 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccc--cCCCCcccccceEEEee-CCeEEEEEECCCccccCCCC--hhHHHHHHHhcC-CC
Confidence 68999999999999999986322 13566676665555555 56788999999986533211 111222222222 68
Q ss_pred ccEEEEEEECCCCCCHHHHH---hcCCCCcHHHHHHHHHhhH--------HHHHhhcc-chhhhhhhhHhhHHHHHHHHH
Q 038053 108 IHAVLVVFSVRSRFSQEEEA---ANGGQPYTDEFLAELKRGA--------TELRDQQA-EVDSLKEYSKQEISKLMGQMQ 175 (231)
Q Consensus 108 ~~~il~vvd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--------~~l~~~~~-~i~~is~~~~~~i~~l~~~i~ 175 (231)
+|++++++|+.+.-...... .....|.+ .++++.|... ..+...++ +++.+|+.++.|+..++..+.
T Consensus 75 ~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~i-iv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~ 153 (158)
T cd01879 75 PDLIVNVVDATNLERNLYLTLQLLELGLPVV-VALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDELKDAIA 153 (158)
T ss_pred CcEEEEEeeCCcchhHHHHHHHHHHcCCCEE-EEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCCCHHHHHHHHH
Confidence 89999999998422211111 22334443 3445544211 12222233 678899999999999887776
Q ss_pred HH
Q 038053 176 ES 177 (231)
Q Consensus 176 ~~ 177 (231)
..
T Consensus 154 ~~ 155 (158)
T cd01879 154 EL 155 (158)
T ss_pred HH
Confidence 64
No 47
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.47 E-value=2.4e-13 Score=111.97 Aligned_cols=99 Identities=28% Similarity=0.347 Sum_probs=62.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
.+|+++|.+|+|||||+|+|+|...+..+ ...+.+.......... .+..+.++||||+++.....+... +..+.+.
T Consensus 39 ~rIllvGktGVGKSSliNsIlG~~v~~vs-~f~s~t~~~~~~~~~~-~G~~l~VIDTPGL~d~~~~~e~~~-~~ik~~l- 114 (313)
T TIGR00991 39 LTILVMGKGGVGKSSTVNSIIGERIATVS-AFQSEGLRPMMVSRTR-AGFTLNIIDTPGLIEGGYINDQAV-NIIKRFL- 114 (313)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCccccc-CCCCcceeEEEEEEEE-CCeEEEEEECCCCCchHHHHHHHH-HHHHHHh-
Confidence 79999999999999999999999865432 2223333322222333 788899999999997532222221 2222221
Q ss_pred hcCCccEEEEEEECC-CCCCHHHH
Q 038053 104 AKGGIHAVLVVFSVR-SRFSQEEE 126 (231)
Q Consensus 104 ~~~~~~~il~vvd~~-~~~~~~~~ 126 (231)
....+|++++|+.+. .+++..|.
T Consensus 115 ~~~g~DvVLyV~rLD~~R~~~~Dk 138 (313)
T TIGR00991 115 LGKTIDVLLYVDRLDAYRVDTLDG 138 (313)
T ss_pred hcCCCCEEEEEeccCcccCCHHHH
Confidence 124799999997654 25555543
No 48
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.47 E-value=8.1e-14 Score=105.52 Aligned_cols=133 Identities=14% Similarity=0.191 Sum_probs=78.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
.+|+++|++|+|||||+|.|+|.... .. .|.. ..+ ... .++||||++... .....++ ..
T Consensus 2 ~~i~~iG~~~~GKstl~~~l~~~~~~----~~--~~~~-----v~~-~~~--~~iDtpG~~~~~---~~~~~~~----~~ 60 (158)
T PRK15467 2 KRIAFVGAVGAGKTTLFNALQGNYTL----AR--KTQA-----VEF-NDK--GDIDTPGEYFSH---PRWYHAL----IT 60 (158)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCcc----Cc--cceE-----EEE-CCC--CcccCCccccCC---HHHHHHH----HH
Confidence 37999999999999999999987541 11 1111 111 111 169999986432 1122222 23
Q ss_pred hcCCccEEEEEEECCCCCCHHHHH---hcCCCCcHHHHHHHHHhh---HHHHHh---hc---cchhhhhhhhHhhHHHHH
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEEEA---ANGGQPYTDEFLAELKRG---ATELRD---QQ---AEVDSLKEYSKQEISKLM 171 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~l~~---~~---~~i~~is~~~~~~i~~l~ 171 (231)
.+..+|++++|+|+++..+..... .....|.+ .++++.+.. ...+.+ .. .|++++|+++|+|+++++
T Consensus 61 ~~~~ad~il~v~d~~~~~s~~~~~~~~~~~~~~ii-~v~nK~Dl~~~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~ 139 (158)
T PRK15467 61 TLQDVDMLIYVHGANDPESRLPAGLLDIGVSKRQI-AVISKTDMPDADVAATRKLLLETGFEEPIFELNSHDPQSVQQLV 139 (158)
T ss_pred HHhcCCEEEEEEeCCCcccccCHHHHhccCCCCeE-EEEEccccCcccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHH
Confidence 357889999999998543322211 11222322 333443311 111111 12 278889999999999999
Q ss_pred HHHHHHH
Q 038053 172 GQMQESY 178 (231)
Q Consensus 172 ~~i~~~~ 178 (231)
..+.+..
T Consensus 140 ~~l~~~~ 146 (158)
T PRK15467 140 DYLASLT 146 (158)
T ss_pred HHHHHhc
Confidence 8887754
No 49
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.47 E-value=1.5e-14 Score=111.83 Aligned_cols=88 Identities=23% Similarity=0.242 Sum_probs=70.2
Q ss_pred CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee----EEeeCCcEEE
Q 038053 1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT----TVLKDGQVVN 76 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~ 76 (231)
++|.||+..+|+++++++.+| ..++||||+|||||||+++|.+... ++.|.++.+..... ....+...++
T Consensus 8 l~K~fg~~~VLkgi~l~v~~G--evv~iiGpSGSGKSTlLRclN~LE~----~~~G~I~i~g~~~~~~~~~~~~R~~vGm 81 (240)
T COG1126 8 LSKSFGDKEVLKGISLSVEKG--EVVVIIGPSGSGKSTLLRCLNGLEE----PDSGSITVDGEDVGDKKDILKLRRKVGM 81 (240)
T ss_pred eeEEeCCeEEecCcceeEcCC--CEEEEECCCCCCHHHHHHHHHCCcC----CCCceEEECCEeccchhhHHHHHHhcCe
Confidence 478999999999999999999 9999999999999999999999998 45555555442111 1111456788
Q ss_pred EEeCCCCcCCCCCchHHH
Q 038053 77 VIDTPGLFDSSAGSEFVG 94 (231)
Q Consensus 77 l~Dtpg~~~~~~~~~~~~ 94 (231)
+++...+|++.++.+++-
T Consensus 82 VFQ~fnLFPHlTvleNv~ 99 (240)
T COG1126 82 VFQQFNLFPHLTVLENVT 99 (240)
T ss_pred ecccccccccchHHHHHH
Confidence 999999999988776553
No 50
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.46 E-value=4.4e-13 Score=98.39 Aligned_cols=129 Identities=17% Similarity=0.248 Sum_probs=79.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
.+|+|||++|||||||+++|.|.... ..-|....+ .+ .+|||||-|-. ...+...+..
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~------~~KTq~i~~------~~---~~IDTPGEyiE-------~~~~y~aLi~ 59 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIR------YKKTQAIEY------YD---NTIDTPGEYIE-------NPRFYHALIV 59 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCC------cCccceeEe------cc---cEEECChhhee-------CHHHHHHHHH
Confidence 58999999999999999999998752 111221111 11 26999996631 1224444455
Q ss_pred hcCCccEEEEEEECCCCCCHHHHH--hcCCCCcHHHHHHHHHhh--H-------HHHHh-hccchhhhhhhhHhhHHHHH
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEEEA--ANGGQPYTDEFLAELKRG--A-------TELRD-QQAEVDSLKEYSKQEISKLM 171 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~-------~~l~~-~~~~i~~is~~~~~~i~~l~ 171 (231)
....+|.|+++.|+++........ .....|.+ -++++.|.. . +.|+. ....++.+|+.+|+|+++|.
T Consensus 60 ta~dad~V~ll~dat~~~~~~pP~fa~~f~~pvI-GVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~ 138 (143)
T PF10662_consen 60 TAQDADVVLLLQDATEPRSVFPPGFASMFNKPVI-GVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELK 138 (143)
T ss_pred HHhhCCEEEEEecCCCCCccCCchhhcccCCCEE-EEEECccCccchhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHH
Confidence 557889999999998654444333 11223332 222222211 0 12221 12378899999999999998
Q ss_pred HHHH
Q 038053 172 GQMQ 175 (231)
Q Consensus 172 ~~i~ 175 (231)
+.+.
T Consensus 139 ~~L~ 142 (143)
T PF10662_consen 139 DYLE 142 (143)
T ss_pred HHHh
Confidence 8764
No 51
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.46 E-value=7.1e-14 Score=109.81 Aligned_cols=84 Identities=17% Similarity=0.230 Sum_probs=69.6
Q ss_pred CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeC
Q 038053 1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDT 80 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dt 80 (231)
++|.||+..+++|++|.+++| ...||+|+|||||||+|++|+|... ++.|.++.......... ..+.+|++..
T Consensus 8 vtK~Fg~k~av~~isf~v~~G--~i~GllG~NGAGKTTtfRmILglle----~~~G~I~~~g~~~~~~~-~~rIGyLPEE 80 (300)
T COG4152 8 VTKSFGDKKAVDNISFEVPPG--EIFGLLGPNGAGKTTTFRMILGLLE----PTEGEITWNGGPLSQEI-KNRIGYLPEE 80 (300)
T ss_pred chhccCceeeecceeeeecCC--eEEEeecCCCCCccchHHHHhccCC----ccCceEEEcCcchhhhh-hhhcccChhh
Confidence 589999999999999999999 9999999999999999999999998 45666665443333333 5788999999
Q ss_pred CCCcCCCCCch
Q 038053 81 PGLFDSSAGSE 91 (231)
Q Consensus 81 pg~~~~~~~~~ 91 (231)
-|+|+..++.+
T Consensus 81 RGLy~k~tv~d 91 (300)
T COG4152 81 RGLYPKMTVED 91 (300)
T ss_pred hccCccCcHHH
Confidence 99998766544
No 52
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.44 E-value=3.6e-12 Score=96.26 Aligned_cols=139 Identities=19% Similarity=0.241 Sum_probs=82.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccc-cCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKAS-ADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
.|+++|++|||||||+|+|+|....... ...+++|............+..+.++||||... +...+..
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~-----------~~~~~~~ 70 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEK-----------FIKNMLA 70 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHH-----------HHHHHHh
Confidence 6899999999999999999986421110 112344554444444442266788999999632 2222333
Q ss_pred hcCCccEEEEEEECCCCCCHHHHH------hcCCCCcHHHHHHHHHhh--------HHHHHhhc-------cchhhhhhh
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEEEA------ANGGQPYTDEFLAELKRG--------ATELRDQQ-------AEVDSLKEY 162 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~--------~~~l~~~~-------~~i~~is~~ 162 (231)
.+..+|++++|+|+++.+...... .....|++ .++++.|.. ..++.+.+ .+++++|++
T Consensus 71 ~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~i-lv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 149 (164)
T cd04171 71 GAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGL-VVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAV 149 (164)
T ss_pred hhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEE-EEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCC
Confidence 456789999999998654433322 11122433 233333310 01222221 267889999
Q ss_pred hHhhHHHHHHHHH
Q 038053 163 SKQEISKLMGQMQ 175 (231)
Q Consensus 163 ~~~~i~~l~~~i~ 175 (231)
++.|+++++..+.
T Consensus 150 ~~~~v~~l~~~l~ 162 (164)
T cd04171 150 TGEGIEELKEYLD 162 (164)
T ss_pred CCcCHHHHHHHHh
Confidence 9999999887764
No 53
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.44 E-value=6.6e-13 Score=107.29 Aligned_cols=93 Identities=20% Similarity=0.236 Sum_probs=68.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCC-chHHHHHHHHHHh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAG-SEFVGKEIVKRIG 102 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~-~~~~~~~~~~~~~ 102 (231)
..||+||.||+|||||.|.+.|...+... ....+|+....+.... ....+++.||||+...... ...+...++....
T Consensus 73 L~vavIG~PNvGKStLtN~mig~kv~~vS-~K~~TTr~~ilgi~ts-~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~ 150 (379)
T KOG1423|consen 73 LYVAVIGAPNVGKSTLTNQMIGQKVSAVS-RKVHTTRHRILGIITS-GETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPR 150 (379)
T ss_pred EEEEEEcCCCcchhhhhhHhhCCcccccc-ccccceeeeeeEEEec-CceEEEEecCCcccccchhhhHHHHHHhhhCHH
Confidence 68999999999999999999999876653 3334444333333333 7788999999998754322 2334444555667
Q ss_pred hhcCCccEEEEEEECC
Q 038053 103 LAKGGIHAVLVVFSVR 118 (231)
Q Consensus 103 ~~~~~~~~il~vvd~~ 118 (231)
.+...+|.++.++|++
T Consensus 151 ~a~q~AD~vvVv~Das 166 (379)
T KOG1423|consen 151 DAAQNADCVVVVVDAS 166 (379)
T ss_pred HHHhhCCEEEEEEecc
Confidence 7778999999999997
No 54
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.44 E-value=7.6e-13 Score=108.16 Aligned_cols=87 Identities=18% Similarity=0.205 Sum_probs=65.8
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC----------------cEEEEEeCCCCcCCCCC
Q 038053 26 VVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG----------------QVVNVIDTPGLFDSSAG 89 (231)
Q Consensus 26 i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~l~Dtpg~~~~~~~ 89 (231)
|||||.||||||||||+|++..... .+.+++|.+...+....... ..+.++|+||+....+.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~--~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~ 78 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEA--ANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 78 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCcc--ccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch
Confidence 6899999999999999999998732 35678887777766555222 14889999999987665
Q ss_pred chHHHHHHHHHHhhhcCCccEEEEEEECC
Q 038053 90 SEFVGKEIVKRIGLAKGGIHAVLVVFSVR 118 (231)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~il~vvd~~ 118 (231)
...++..++.. +..+|++++|||+.
T Consensus 79 ~~glg~~fL~~----i~~~D~li~VV~~f 103 (274)
T cd01900 79 GEGLGNKFLSH----IREVDAIAHVVRCF 103 (274)
T ss_pred hhHHHHHHHHH----HHhCCEEEEEEeCc
Confidence 55666555544 35679999999975
No 55
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.43 E-value=2.4e-13 Score=104.03 Aligned_cols=141 Identities=20% Similarity=0.265 Sum_probs=85.1
Q ss_pred EEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeC-CcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhhcC
Q 038053 28 LLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKG 106 (231)
Q Consensus 28 lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~ 106 (231)
|+|++|||||||+|+|++.... . ...+++|.......... . +..+.++||||+.......+.+...+. ..+.
T Consensus 1 iiG~~~~GKStll~~l~~~~~~-~-~~~~~~t~~~~~~~~~~-~~~~~~~i~DtpG~~~~~~~~~~~~~~~~----~~~~ 73 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPK-V-ANYPFTTLEPNLGVVEV-PDGARIQVADIPGLIEGASEGRGLGNQFL----AHIR 73 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCcc-c-cCCCceeecCcceEEEc-CCCCeEEEEeccccchhhhcCCCccHHHH----HHHh
Confidence 5899999999999999998642 1 23455565555554444 5 788899999998653322222222222 2235
Q ss_pred CccEEEEEEECCCCC-----CHH-HHH--------hc--------CCCCcHHHHHHHHHhhH-HHHHh---------hcc
Q 038053 107 GIHAVLVVFSVRSRF-----SQE-EEA--------AN--------GGQPYTDEFLAELKRGA-TELRD---------QQA 154 (231)
Q Consensus 107 ~~~~il~vvd~~~~~-----~~~-~~~--------~~--------~~~~~~~~~~~~~~~~~-~~l~~---------~~~ 154 (231)
.+|++++|+|+.+.. ... +.. .. ...|.+ .++++.|... ..+.. ...
T Consensus 74 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 152 (176)
T cd01881 74 RADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVI-YVLNKIDLDDAEELEEELVRELALEEGA 152 (176)
T ss_pred ccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeE-EEEEchhcCchhHHHHHHHHHHhcCCCC
Confidence 689999999998542 221 111 11 233443 3445554211 11111 112
Q ss_pred chhhhhhhhHhhHHHHHHHHHH
Q 038053 155 EVDSLKEYSKQEISKLMGQMQE 176 (231)
Q Consensus 155 ~i~~is~~~~~~i~~l~~~i~~ 176 (231)
+++.+|++++.|++++++.+..
T Consensus 153 ~~~~~Sa~~~~gl~~l~~~l~~ 174 (176)
T cd01881 153 EVVPISAKTEEGLDELIRAIYE 174 (176)
T ss_pred CEEEEehhhhcCHHHHHHHHHh
Confidence 6778899999999998887654
No 56
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.43 E-value=3.1e-12 Score=103.56 Aligned_cols=99 Identities=32% Similarity=0.384 Sum_probs=64.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
.+|+|+|++|+|||||+|+|+|...+..+ ...+.|.......... .+..+.++||||+.+.... ......+...+..
T Consensus 32 ~~IllvG~tGvGKSSliNaLlg~~~~~v~-~~~~~T~~~~~~~~~~-~g~~i~vIDTPGl~~~~~~-~~~~~~~~~~I~~ 108 (249)
T cd01853 32 LTILVLGKTGVGKSSTINSIFGERKAATS-AFQSETLRVREVSGTV-DGFKLNIIDTPGLLESVMD-QRVNRKILSSIKR 108 (249)
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCcccC-CCCCceEEEEEEEEEE-CCeEEEEEECCCcCcchhh-HHHHHHHHHHHHH
Confidence 89999999999999999999999865543 3444555554444444 6778999999999875321 1122222222222
Q ss_pred hc--CCccEEEEEEECC-CCCCHHH
Q 038053 104 AK--GGIHAVLVVFSVR-SRFSQEE 125 (231)
Q Consensus 104 ~~--~~~~~il~vvd~~-~~~~~~~ 125 (231)
.. ..+|+++++..+. .+++..+
T Consensus 109 ~l~~~~idvIL~V~rlD~~r~~~~d 133 (249)
T cd01853 109 YLKKKTPDVVLYVDRLDMYRRDYLD 133 (249)
T ss_pred HHhccCCCEEEEEEcCCCCCCCHHH
Confidence 22 3678888887665 2344443
No 57
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.43 E-value=1.6e-12 Score=100.42 Aligned_cols=99 Identities=16% Similarity=0.272 Sum_probs=62.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCC-ccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHH---H
Q 038053 23 KRTVVLLGRTGNGKSATGNSILGRK-AFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEI---V 98 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~---~ 98 (231)
...|+++|.+|+|||||+|.|++.. .... ....+.|........ . ..+.++||||+......... ...+ .
T Consensus 18 ~~~i~ivG~~~~GKStlin~l~~~~~~~~~-~~~~~~t~~~~~~~~---~-~~~~liDtpG~~~~~~~~~~-~~~~~~~~ 91 (179)
T TIGR03598 18 GPEIAFAGRSNVGKSSLINALTNRKKLART-SKTPGRTQLINFFEV---N-DGFRLVDLPGYGYAKVSKEE-KEKWQKLI 91 (179)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCcccc-cCCCCcceEEEEEEe---C-CcEEEEeCCCCccccCChhH-HHHHHHHH
Confidence 3799999999999999999999975 2222 134455654443322 2 36789999998653321111 1111 1
Q ss_pred HHHhhhcCCccEEEEEEECCCCCCHHHHH
Q 038053 99 KRIGLAKGGIHAVLVVFSVRSRFSQEEEA 127 (231)
Q Consensus 99 ~~~~~~~~~~~~il~vvd~~~~~~~~~~~ 127 (231)
..+......++++++|+|++.+++..+..
T Consensus 92 ~~~l~~~~~~~~ii~vvd~~~~~~~~~~~ 120 (179)
T TIGR03598 92 EEYLEKRENLKGVVLLMDIRHPLKELDLE 120 (179)
T ss_pred HHHHHhChhhcEEEEEecCCCCCCHHHHH
Confidence 11222224578999999998777776653
No 58
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.43 E-value=4.4e-12 Score=96.48 Aligned_cols=147 Identities=21% Similarity=0.186 Sum_probs=84.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCch-HHHHHHHHHHh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSE-FVGKEIVKRIG 102 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~-~~~~~~~~~~~ 102 (231)
++|+++|++|+|||||+|.|++...... ..++.|.......... .+..+.++||||+.+...... .+.......
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~-- 75 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVA--PYPFTTKSLFVGHFDY-KYLRWQVIDTPGLLDRPLEERNTIEMQAITA-- 75 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccC--CCCCcccceeEEEEcc-CceEEEEEECCCcCCccccCCchHHHHHHHH--
Confidence 3799999999999999999999865321 2334455444444433 567889999999854221111 111111111
Q ss_pred hhcCCccEEEEEEECCCCCC--HHHHH------hc--CCCCcHHHHHHHHHhhH----H---HHHhh-ccchhhhhhhhH
Q 038053 103 LAKGGIHAVLVVFSVRSRFS--QEEEA------AN--GGQPYTDEFLAELKRGA----T---ELRDQ-QAEVDSLKEYSK 164 (231)
Q Consensus 103 ~~~~~~~~il~vvd~~~~~~--~~~~~------~~--~~~~~~~~~~~~~~~~~----~---~l~~~-~~~i~~is~~~~ 164 (231)
.....|++++|+|+++... ..+.. .. ...|.+ .++++.|... . .+... ..+++.+|+++|
T Consensus 76 -~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvi-lv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 153 (168)
T cd01897 76 -LAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVI-VVLNKIDLLTFEDLSEIEEEEELEGEEVLKISTLTE 153 (168)
T ss_pred -HHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeE-EEEEccccCchhhHHHHHHhhhhccCceEEEEeccc
Confidence 1123588999999985322 12211 11 133333 3445544211 1 11111 126777899999
Q ss_pred hhHHHHHHHHHHH
Q 038053 165 QEISKLMGQMQES 177 (231)
Q Consensus 165 ~~i~~l~~~i~~~ 177 (231)
.|++++++.+...
T Consensus 154 ~gi~~l~~~l~~~ 166 (168)
T cd01897 154 EGVDEVKNKACEL 166 (168)
T ss_pred CCHHHHHHHHHHH
Confidence 9999998877653
No 59
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.43 E-value=7.8e-13 Score=106.34 Aligned_cols=88 Identities=22% Similarity=0.286 Sum_probs=62.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhh
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLA 104 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~ 104 (231)
+|+|+|+||+|||||+|.|+|...... ..+.+|..+..+.... .+..+.++||||+.+...........+ ...
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~--~~~~tT~~~~~g~~~~-~~~~i~l~DtpG~~~~~~~~~~~~~~~----l~~ 74 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVA--AYEFTTLTCVPGVLEY-KGAKIQLLDLPGIIEGAADGKGRGRQV----IAV 74 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcccc--CCCCccccceEEEEEE-CCeEEEEEECCCcccccccchhHHHHH----HHh
Confidence 689999999999999999999875322 3555666555555555 778889999999876432222222222 234
Q ss_pred cCCccEEEEEEECCC
Q 038053 105 KGGIHAVLVVFSVRS 119 (231)
Q Consensus 105 ~~~~~~il~vvd~~~ 119 (231)
...+|.+++|+|+++
T Consensus 75 ~~~ad~il~V~D~t~ 89 (233)
T cd01896 75 ARTADLILMVLDATK 89 (233)
T ss_pred hccCCEEEEEecCCc
Confidence 578899999999874
No 60
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.42 E-value=1.5e-13 Score=111.81 Aligned_cols=101 Identities=20% Similarity=0.237 Sum_probs=76.2
Q ss_pred cccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHH
Q 038053 14 WKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFV 93 (231)
Q Consensus 14 ~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~ 93 (231)
..|.+++.+.-.++|||+|++|||||||.|++...... +.+.+|..+..+.... ++..+.++|+||+..+.+.....
T Consensus 54 ~gf~V~KsGda~v~lVGfPsvGKStLL~~LTnt~seva--~y~FTTl~~VPG~l~Y-~ga~IQild~Pgii~gas~g~gr 130 (365)
T COG1163 54 SGFAVKKSGDATVALVGFPSVGKSTLLNKLTNTKSEVA--DYPFTTLEPVPGMLEY-KGAQIQLLDLPGIIEGASSGRGR 130 (365)
T ss_pred CcceEeccCCeEEEEEcCCCccHHHHHHHHhCCCcccc--ccCceecccccceEee-cCceEEEEcCcccccCcccCCCC
Confidence 35667766668999999999999999999999976432 4555555555555555 89999999999999877666555
Q ss_pred HHHHHHHHhhhcCCccEEEEEEECCCCC
Q 038053 94 GKEIVKRIGLAKGGIHAVLVVFSVRSRF 121 (231)
Q Consensus 94 ~~~~~~~~~~~~~~~~~il~vvd~~~~~ 121 (231)
+.+++. ....+|.+++|+|+....
T Consensus 131 G~~vls----v~R~ADlIiiVld~~~~~ 154 (365)
T COG1163 131 GRQVLS----VARNADLIIIVLDVFEDP 154 (365)
T ss_pred cceeee----eeccCCEEEEEEecCCCh
Confidence 555443 346779999999997443
No 61
>PRK04213 GTP-binding protein; Provisional
Probab=99.41 E-value=3.3e-12 Score=100.30 Aligned_cols=147 Identities=19% Similarity=0.215 Sum_probs=84.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHH----
Q 038053 23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIV---- 98 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~---- 98 (231)
..+|+++|++|||||||+|.|+|.... . ...+++|..... ... . .+.++||||+...........+.+.
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~~~-~-~~~~~~t~~~~~--~~~-~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKKVR-V-GKRPGVTRKPNH--YDW-G--DFILTDLPGFGFMSGVPKEVQEKIKDEIV 81 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCc-c-CCCCceeeCceE--Eee-c--ceEEEeCCccccccccCHHHHHHHHHHHH
Confidence 378999999999999999999997642 2 134455554322 222 2 5789999997543322222122222
Q ss_pred HHHhhhcCCccEEEEEEECCCC------CCH-----HHHH-----hcCCCCcHHHHHHHHHh------hHHHHHhhcc--
Q 038053 99 KRIGLAKGGIHAVLVVFSVRSR------FSQ-----EEEA-----ANGGQPYTDEFLAELKR------GATELRDQQA-- 154 (231)
Q Consensus 99 ~~~~~~~~~~~~il~vvd~~~~------~~~-----~~~~-----~~~~~~~~~~~~~~~~~------~~~~l~~~~~-- 154 (231)
.++......++++++|+|..+. |.. .+.. .....|++ .++|+.|. ...++.+.++
T Consensus 82 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~i-iv~NK~Dl~~~~~~~~~~~~~~~~~~ 160 (201)
T PRK04213 82 RYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPI-VAVNKMDKIKNRDEVLDEIAERLGLY 160 (201)
T ss_pred HHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeE-EEEECccccCcHHHHHHHHHHHhcCC
Confidence 2223234567899999998632 110 0110 12234443 34444331 1123333222
Q ss_pred --------chhhhhhhhHhhHHHHHHHHHHHH
Q 038053 155 --------EVDSLKEYSKQEISKLMGQMQESY 178 (231)
Q Consensus 155 --------~i~~is~~~~~~i~~l~~~i~~~~ 178 (231)
+++.+||++| |+++++..+...+
T Consensus 161 ~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~ 191 (201)
T PRK04213 161 PPWRQWQDIIAPISAKKG-GIEELKEAIRKRL 191 (201)
T ss_pred ccccccCCcEEEEecccC-CHHHHHHHHHHhh
Confidence 3678999999 9999988887654
No 62
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.41 E-value=7.9e-13 Score=117.44 Aligned_cols=92 Identities=32% Similarity=0.418 Sum_probs=63.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
.+|+|+|++|+|||||+|+|+|...+.+....++ |+......... .+..+.|+||||+++.... .....++...+..
T Consensus 119 lrIvLVGKTGVGKSSLINSILGekvf~vss~~~~-TTr~~ei~~~i-dG~~L~VIDTPGL~dt~~d-q~~neeILk~Ik~ 195 (763)
T TIGR00993 119 LNILVLGKSGVGKSATINSIFGEVKFSTDAFGMG-TTSVQEIEGLV-QGVKIRVIDTPGLKSSASD-QSKNEKILSSVKK 195 (763)
T ss_pred eEEEEECCCCCCHHHHHHHHhccccccccCCCCC-ceEEEEEEEEE-CCceEEEEECCCCCccccc-hHHHHHHHHHHHH
Confidence 5899999999999999999999987766432334 44433333333 6788999999999986432 2233444444433
Q ss_pred hc--CCccEEEEEEECC
Q 038053 104 AK--GGIHAVLVVFSVR 118 (231)
Q Consensus 104 ~~--~~~~~il~vvd~~ 118 (231)
.+ ..+|++|+|+.+.
T Consensus 196 ~Lsk~gpDVVLlV~RLd 212 (763)
T TIGR00993 196 FIKKNPPDIVLYVDRLD 212 (763)
T ss_pred HHhcCCCCEEEEEEeCC
Confidence 32 3689999999876
No 63
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.41 E-value=1.5e-11 Score=96.06 Aligned_cols=148 Identities=18% Similarity=0.250 Sum_probs=84.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCC-ccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchH--HHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRK-AFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEF--VGKEIVKR 100 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~--~~~~~~~~ 100 (231)
..|+++|.+|+|||||+|.|++.. .... ....++|....... .+..+.++||||+......... ....+...
T Consensus 25 ~~v~ivG~~~~GKSsli~~l~~~~~~~~~-~~~~~~t~~~~~~~----~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~ 99 (196)
T PRK00454 25 PEIAFAGRSNVGKSSLINALTNRKNLART-SKTPGRTQLINFFE----VNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEE 99 (196)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCcccc-cCCCCceeEEEEEe----cCCeEEEeCCCCCCCcCCCchHHHHHHHHHHH
Confidence 789999999999999999999964 2222 23344554433221 2467889999997643221111 11122222
Q ss_pred HhhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHh------hH--HHHHhhc----cchhhhhhhh
Q 038053 101 IGLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKR------GA--TELRDQQ----AEVDSLKEYS 163 (231)
Q Consensus 101 ~~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~------~~--~~l~~~~----~~i~~is~~~ 163 (231)
+......++.+++++|.+...+..+.. .....++. .+.++++. +. ..+...+ .+++++|+++
T Consensus 100 ~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~i-iv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~ 178 (196)
T PRK00454 100 YLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVL-IVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFSSLK 178 (196)
T ss_pred HHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEE-EEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEEcCC
Confidence 223335667888999987666554432 11223322 12222221 00 1222222 3677889999
Q ss_pred HhhHHHHHHHHHHH
Q 038053 164 KQEISKLMGQMQES 177 (231)
Q Consensus 164 ~~~i~~l~~~i~~~ 177 (231)
+.|+++++..+.+.
T Consensus 179 ~~gi~~l~~~i~~~ 192 (196)
T PRK00454 179 KQGIDELRAAIAKW 192 (196)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999998877654
No 64
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.41 E-value=1.8e-14 Score=113.26 Aligned_cols=88 Identities=22% Similarity=0.135 Sum_probs=66.4
Q ss_pred CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee----EEeeCCcEEE
Q 038053 1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT----TVLKDGQVVN 76 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~ 76 (231)
++|+||+-.++++++|++.+| .+++||||||||||||+|.|+|...+ +.|.++....... .....-....
T Consensus 10 l~k~FGGl~Al~~Vsl~v~~G--ei~~LIGPNGAGKTTlfNlitG~~~P----~~G~v~~~G~~it~l~p~~iar~Gi~R 83 (250)
T COG0411 10 LSKRFGGLTAVNDVSLEVRPG--EIVGLIGPNGAGKTTLFNLITGFYKP----SSGTVIFRGRDITGLPPHRIARLGIAR 83 (250)
T ss_pred ceeecCCEEEEeceeEEEcCC--eEEEEECCCCCCceeeeeeecccccC----CCceEEECCcccCCCCHHHHHhcccee
Confidence 578999999999999999999 99999999999999999999999984 4443332221100 0011234566
Q ss_pred EEeCCCCcCCCCCchHHH
Q 038053 77 VIDTPGLFDSSAGSEFVG 94 (231)
Q Consensus 77 l~Dtpg~~~~~~~~~~~~ 94 (231)
-+|++-+++..++.+++.
T Consensus 84 TFQ~~rlF~~lTVlENv~ 101 (250)
T COG0411 84 TFQITRLFPGLTVLENVA 101 (250)
T ss_pred ecccccccCCCcHHHHHH
Confidence 789999999888776653
No 65
>PTZ00258 GTP-binding protein; Provisional
Probab=99.41 E-value=2.1e-12 Score=110.10 Aligned_cols=89 Identities=16% Similarity=0.180 Sum_probs=67.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeC----------------CcEEEEEeCCCCcCCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKD----------------GQVVNVIDTPGLFDSS 87 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~l~Dtpg~~~~~ 87 (231)
..|+|||.||+|||||||+|++..... .+.+++|.++..+.+.... ...+.++||||+....
T Consensus 22 ~kvgIVG~PNvGKSTLfnaLt~~~~~v--~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga 99 (390)
T PTZ00258 22 LKMGIVGLPNVGKSTTFNALCKQQVPA--ENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGA 99 (390)
T ss_pred cEEEEECCCCCChHHHHHHHhcCcccc--cCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCC
Confidence 799999999999999999999987533 3568888777776665421 2247899999999766
Q ss_pred CCchHHHHHHHHHHhhhcCCccEEEEEEECC
Q 038053 88 AGSEFVGKEIVKRIGLAKGGIHAVLVVFSVR 118 (231)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~ 118 (231)
.....++..++.. +..+|++++|+|+.
T Consensus 100 ~~g~gLg~~fL~~----Ir~aD~il~VVd~f 126 (390)
T PTZ00258 100 SEGEGLGNAFLSH----IRAVDGIYHVVRAF 126 (390)
T ss_pred cchhHHHHHHHHH----HHHCCEEEEEEeCC
Confidence 5545565555544 35679999999985
No 66
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.41 E-value=2.1e-13 Score=113.59 Aligned_cols=90 Identities=20% Similarity=0.144 Sum_probs=68.9
Q ss_pred CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE-EeeCCcEEEEEe
Q 038053 1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT-VLKDGQVVNVID 79 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~l~D 79 (231)
++|.||...+++++++++.+| ..++|+||||||||||+|+|+|...+ +.|.+......... .-......++++
T Consensus 9 v~K~yg~~~~l~~i~l~i~~G--ef~vllGPSGcGKSTlLr~IAGLe~~----~~G~I~i~g~~vt~l~P~~R~iamVFQ 82 (338)
T COG3839 9 VRKSFGSFEVLKDVNLDIEDG--EFVVLLGPSGCGKSTLLRMIAGLEEP----TSGEILIDGRDVTDLPPEKRGIAMVFQ 82 (338)
T ss_pred eEEEcCCceeeecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CCceEEECCEECCCCChhHCCEEEEeC
Confidence 367888777999999999999 99999999999999999999999984 44433332222111 111456889999
Q ss_pred CCCCcCCCCCchHHHHH
Q 038053 80 TPGLFDSSAGSEFVGKE 96 (231)
Q Consensus 80 tpg~~~~~~~~~~~~~~ 96 (231)
.+-+||+.++.+++..-
T Consensus 83 ~yALyPhmtV~~Niaf~ 99 (338)
T COG3839 83 NYALYPHMTVYENIAFG 99 (338)
T ss_pred CccccCCCcHHHHhhhh
Confidence 99999998887766443
No 67
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.40 E-value=2.2e-12 Score=108.80 Aligned_cols=89 Identities=19% Similarity=0.200 Sum_probs=66.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC----------------cEEEEEeCCCCcCCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG----------------QVVNVIDTPGLFDSS 87 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~l~Dtpg~~~~~ 87 (231)
..|||||.||||||||||+|++.... . .+.+++|.++..+....... ..+.++|+||+.+..
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~-v-~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a 80 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAE-A-ANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA 80 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCe-e-cccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence 68999999999999999999998842 2 35678887777665544221 247899999999766
Q ss_pred CCchHHHHHHHHHHhhhcCCccEEEEEEECC
Q 038053 88 AGSEFVGKEIVKRIGLAKGGIHAVLVVFSVR 118 (231)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~ 118 (231)
.....++..++.. +..+|++++|||+.
T Consensus 81 ~~g~glg~~fL~~----i~~aD~li~VVd~f 107 (364)
T PRK09601 81 SKGEGLGNQFLAN----IREVDAIVHVVRCF 107 (364)
T ss_pred ChHHHHHHHHHHH----HHhCCEEEEEEeCC
Confidence 5545555555544 35779999999985
No 68
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.40 E-value=8.9e-13 Score=100.22 Aligned_cols=138 Identities=14% Similarity=0.081 Sum_probs=81.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccc--cCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKAS--ADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG 102 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~ 102 (231)
+|+++|++|+|||||+|.|++......+ ......|.......... .+..+.++||||... +.....
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~~~~ 68 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEV-GNARLKFWDLGGQES-----------LRSLWD 68 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEE-CCEEEEEEECCCChh-----------hHHHHH
Confidence 4899999999999999999875432111 11223333333333444 678889999999754 111222
Q ss_pred hhcCCccEEEEEEECCCCCCHHHHH------h----cCCCCcHHHHHHHHHhhH----HHHHhhc-----------cchh
Q 038053 103 LAKGGIHAVLVVFSVRSRFSQEEEA------A----NGGQPYTDEFLAELKRGA----TELRDQQ-----------AEVD 157 (231)
Q Consensus 103 ~~~~~~~~il~vvd~~~~~~~~~~~------~----~~~~~~~~~~~~~~~~~~----~~l~~~~-----------~~i~ 157 (231)
..+..+|++++|+|+++.-+..... . ....|++ .++++.|... ..+...+ -+++
T Consensus 69 ~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (167)
T cd04160 69 KYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLL-ILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVL 147 (167)
T ss_pred HHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEE-EEEEccccccCCCHHHHHHHhccccccccCCceEEE
Confidence 3457889999999997432211111 0 1233443 3445544211 1121111 1577
Q ss_pred hhhhhhHhhHHHHHHHHH
Q 038053 158 SLKEYSKQEISKLMGQMQ 175 (231)
Q Consensus 158 ~is~~~~~~i~~l~~~i~ 175 (231)
.+|+++|.|+++++..+.
T Consensus 148 ~~Sa~~g~gv~e~~~~l~ 165 (167)
T cd04160 148 PVSALEGTGVREGIEWLV 165 (167)
T ss_pred EeeCCCCcCHHHHHHHHh
Confidence 899999999998877654
No 69
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.38 E-value=2.4e-12 Score=97.74 Aligned_cols=139 Identities=14% Similarity=0.194 Sum_probs=83.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEee--CCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLK--DGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG 102 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~ 102 (231)
.|+++|.+|+|||||+|.|++...... ..++.|........... .+..+.++||||... +.....
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~-----------~~~~~~ 68 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAG--EAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEA-----------FTNMRA 68 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccc--cCCCeEEeeccEEEecccCCcceEEEEeCCCcHH-----------HHHHHH
Confidence 699999999999999999998764221 23344544333333331 256889999999643 111112
Q ss_pred hhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhhH-------HHHHh---h----c---cchhhhh
Q 038053 103 LAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRGA-------TELRD---Q----Q---AEVDSLK 160 (231)
Q Consensus 103 ~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-------~~l~~---~----~---~~i~~is 160 (231)
.....+|++++|+|+++........ .....|.+ .++++++... ..+.. . . .+++.+|
T Consensus 69 ~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~i-vv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 147 (168)
T cd01887 69 RGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFI-VALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTS 147 (168)
T ss_pred HHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEE-EEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEee
Confidence 2346789999999998654433322 12233333 2333333110 11111 0 1 1567789
Q ss_pred hhhHhhHHHHHHHHHHH
Q 038053 161 EYSKQEISKLMGQMQES 177 (231)
Q Consensus 161 ~~~~~~i~~l~~~i~~~ 177 (231)
+.+|.|+.+++..+...
T Consensus 148 a~~~~gi~~l~~~l~~~ 164 (168)
T cd01887 148 AKTGEGIDDLLEAILLL 164 (168)
T ss_pred cccCCCHHHHHHHHHHh
Confidence 99999999998887664
No 70
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.38 E-value=4.2e-13 Score=106.16 Aligned_cols=135 Identities=10% Similarity=0.064 Sum_probs=83.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccc-----------------------------cCCCCcceeeeeeeEEeeCCcEE
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKAS-----------------------------ADSSGVTKTCEMKTTVLKDGQVV 75 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~~~~~~~ 75 (231)
+|+++|++|+|||||++.|++....... ....++|.+.......+ .+..+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~ 79 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFST-PKRKF 79 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEec-CCceE
Confidence 5899999999999999999876543220 01145666655555555 67789
Q ss_pred EEEeCCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhhH----
Q 038053 76 NVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRGA---- 146 (231)
Q Consensus 76 ~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~---- 146 (231)
.++||||..+ +...+...+..+|++++|+|++.++...+.. .....+.++.++|++|...
T Consensus 80 ~liDTpG~~~-----------~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~ 148 (208)
T cd04166 80 IIADTPGHEQ-----------YTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEE 148 (208)
T ss_pred EEEECCcHHH-----------HHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHH
Confidence 9999999632 1122223457889999999998776555432 1122233223345544210
Q ss_pred ------HHHHhh---cc----chhhhhhhhHhhHHHHH
Q 038053 147 ------TELRDQ---QA----EVDSLKEYSKQEISKLM 171 (231)
Q Consensus 147 ------~~l~~~---~~----~i~~is~~~~~~i~~l~ 171 (231)
.++... ++ +++++|+++|.|+.+..
T Consensus 149 ~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~~ 186 (208)
T cd04166 149 VFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSRS 186 (208)
T ss_pred HHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccCC
Confidence 122211 11 37789999998887543
No 71
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.37 E-value=4.4e-13 Score=112.32 Aligned_cols=90 Identities=21% Similarity=0.155 Sum_probs=70.4
Q ss_pred CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEEeeCCcEEEEEe
Q 038053 1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTVLKDGQVVNVID 79 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~D 79 (231)
++|.||+..+++|+++++.+| ..++|+||||||||||+++|.|...+ +.|.+....... .....+....++++
T Consensus 11 v~k~yg~~~av~~isl~i~~G--ef~~lLGPSGcGKTTlLR~IAGfe~p----~~G~I~l~G~~i~~lpp~kR~ig~VFQ 84 (352)
T COG3842 11 VSKSFGDFTAVDDISLDIKKG--EFVTLLGPSGCGKTTLLRMIAGFEQP----SSGEILLDGEDITDVPPEKRPIGMVFQ 84 (352)
T ss_pred eeeecCCeeEEecceeeecCC--cEEEEECCCCCCHHHHHHHHhCCCCC----CCceEEECCEECCCCChhhcccceeec
Confidence 478999999999999999999 99999999999999999999999984 444333322211 12222456788999
Q ss_pred CCCCcCCCCCchHHHHH
Q 038053 80 TPGLFDSSAGSEFVGKE 96 (231)
Q Consensus 80 tpg~~~~~~~~~~~~~~ 96 (231)
..-+||+.++.+++..-
T Consensus 85 ~YALFPHltV~~NVafG 101 (352)
T COG3842 85 SYALFPHMTVEENVAFG 101 (352)
T ss_pred CcccCCCCcHHHHhhhh
Confidence 99999999888775443
No 72
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.37 E-value=2.3e-12 Score=98.77 Aligned_cols=134 Identities=14% Similarity=0.151 Sum_probs=80.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
.+|+++|++|||||||+|.+++...... ..|.......... .+..+.++||||... +......
T Consensus 15 ~kv~ivG~~~~GKTsL~~~l~~~~~~~~-----~~t~g~~~~~~~~-~~~~l~l~D~~G~~~-----------~~~~~~~ 77 (173)
T cd04154 15 MRILILGLDNAGKTTILKKLLGEDIDTI-----SPTLGFQIKTLEY-EGYKLNIWDVGGQKT-----------LRPYWRN 77 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCCCc-----CCccccceEEEEE-CCEEEEEEECCCCHH-----------HHHHHHH
Confidence 6899999999999999999998844211 1122112222333 566788999999653 1111223
Q ss_pred hcCCccEEEEEEECCCCCCHHHHH----------hcCCCCcHHHHHHHHHhh----HHHHHhhc---------cchhhhh
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEEEA----------ANGGQPYTDEFLAELKRG----ATELRDQQ---------AEVDSLK 160 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~----~~~l~~~~---------~~i~~is 160 (231)
.+..+|++++|+|.++.-+..+.. .....|++ .+.++.|.. ..++...+ -+++.+|
T Consensus 78 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-iv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 156 (173)
T cd04154 78 YFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLL-ILANKQDLPGALSEEEIREALELDKISSHHWRIQPCS 156 (173)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEE-EEEECcccccCCCHHHHHHHhCccccCCCceEEEecc
Confidence 356889999999998542222211 11223333 344444421 02232222 1678899
Q ss_pred hhhHhhHHHHHHHHH
Q 038053 161 EYSKQEISKLMGQMQ 175 (231)
Q Consensus 161 ~~~~~~i~~l~~~i~ 175 (231)
|++|.|+++++..+.
T Consensus 157 a~~g~gi~~l~~~l~ 171 (173)
T cd04154 157 AVTGEGLLQGIDWLV 171 (173)
T ss_pred CCCCcCHHHHHHHHh
Confidence 999999999887664
No 73
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.37 E-value=1.4e-12 Score=102.08 Aligned_cols=133 Identities=18% Similarity=0.187 Sum_probs=81.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccc--------------cCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKAS--------------ADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAG 89 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~--------------~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~ 89 (231)
.+|+++|+.|+|||||+++|++....... ....+.|.........+ .+..+.++||||..+
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~~---- 77 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYET-ANRHYAHVDCPGHAD---- 77 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecC-CCeEEEEEECcCHHH----
Confidence 68999999999999999999865211000 01345555544444444 567889999999642
Q ss_pred chHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhh--H-------HHHHhhc--
Q 038053 90 SEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRG--A-------TELRDQQ-- 153 (231)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~--~-------~~l~~~~-- 153 (231)
+...+...+..+|.+++|+|+..++...+.. ...+.+.++.+++++|.- . .++...+
T Consensus 78 -------~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~ 150 (195)
T cd01884 78 -------YIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSK 150 (195)
T ss_pred -------HHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 3333444557889999999998777766644 223334222223333310 0 1232222
Q ss_pred -------cchhhhhhhhHhhHH
Q 038053 154 -------AEVDSLKEYSKQEIS 168 (231)
Q Consensus 154 -------~~i~~is~~~~~~i~ 168 (231)
-+++++|+++|.++.
T Consensus 151 ~g~~~~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 151 YGFDGDNTPIVRGSALKALEGD 172 (195)
T ss_pred hcccccCCeEEEeeCccccCCC
Confidence 157889999987753
No 74
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.36 E-value=3.2e-11 Score=108.89 Aligned_cols=140 Identities=17% Similarity=0.236 Sum_probs=91.2
Q ss_pred cCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhhcCCcc
Q 038053 30 GRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIH 109 (231)
Q Consensus 30 G~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (231)
|++|+|||||+|.++|.... . .+.+++|.+........ .+..+.++||||.++..... ..+.+...+. ....+|
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~-v-~n~pG~Tv~~~~~~i~~-~~~~i~lvDtPG~~~~~~~s--~~e~v~~~~l-~~~~aD 74 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQT-V-GNWPGVTVEKKEGKLGF-QGEDIEIVDLPGIYSLTTFS--LEEEVARDYL-LNEKPD 74 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCe-e-cCCCCeEEEEEEEEEEE-CCeEEEEEECCCccccCccc--hHHHHHHHHH-hhcCCC
Confidence 89999999999999998753 2 25778888776655555 66778999999998643221 1122222221 225789
Q ss_pred EEEEEEECCCCCCHHHHH----hcCCCCcHHHHHHHHHhh--------HHHHHhhcc-chhhhhhhhHhhHHHHHHHHHH
Q 038053 110 AVLVVFSVRSRFSQEEEA----ANGGQPYTDEFLAELKRG--------ATELRDQQA-EVDSLKEYSKQEISKLMGQMQE 176 (231)
Q Consensus 110 ~il~vvd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--------~~~l~~~~~-~i~~is~~~~~~i~~l~~~i~~ 176 (231)
++++|+|+++ +...... ...+.|.+ .+.|+.|.. .+.+.+.++ +++++|+++|.|++++++.+.+
T Consensus 75 vvI~VvDat~-ler~l~l~~ql~~~~~PiI-IVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~ 152 (591)
T TIGR00437 75 LVVNVVDASN-LERNLYLTLQLLELGIPMI-LALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLKDAIRK 152 (591)
T ss_pred EEEEEecCCc-chhhHHHHHHHHhcCCCEE-EEEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 9999999983 3322111 22344443 334444421 124444444 7888999999999999999876
Q ss_pred H
Q 038053 177 S 177 (231)
Q Consensus 177 ~ 177 (231)
.
T Consensus 153 ~ 153 (591)
T TIGR00437 153 A 153 (591)
T ss_pred H
Confidence 4
No 75
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.36 E-value=2.7e-12 Score=98.60 Aligned_cols=118 Identities=19% Similarity=0.153 Sum_probs=75.4
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE--EeeCCcEEEEEe
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT--VLKDGQVVNVID 79 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~l~D 79 (231)
++.|++.++++++++++.+| ..++|+|+||+|||||+++|+|...+ ..|.++........ ........++++
T Consensus 7 ~~~~~~~~~l~~~~~~i~~G--e~~~i~G~nGsGKStLl~~l~G~~~~----~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (173)
T cd03230 7 SKRYGKKTALDDISLTVEKG--EIYGLLGPNGAGKTTLIKIILGLLKP----DSGEIKVLGKDIKKEPEEVKRRIGYLPE 80 (173)
T ss_pred EEEECCeeeeeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCC----CCeEEEECCEEcccchHhhhccEEEEec
Confidence 45667678999999999999 99999999999999999999999763 33333322211000 011345678899
Q ss_pred CCCCcCCCCCchHH----HHHHHHHHhhhcCCccEEEEEEECCCCCCHHH
Q 038053 80 TPGLFDSSAGSEFV----GKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEE 125 (231)
Q Consensus 80 tpg~~~~~~~~~~~----~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~ 125 (231)
.|.+++..+..+++ ++.-+-.+..++.....++++-+++..++...
T Consensus 81 ~~~~~~~~tv~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~ 130 (173)
T cd03230 81 EPSLYENLTVRENLKLSGGMKQRLALAQALLHDPELLILDEPTSGLDPES 130 (173)
T ss_pred CCccccCCcHHHHhhcCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHH
Confidence 88887765554442 22222223334344446666777774454433
No 76
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.35 E-value=8.4e-12 Score=97.12 Aligned_cols=142 Identities=18% Similarity=0.297 Sum_probs=91.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccc----------------cCCCCcceeeeeeeEE-eeCCcEEEEEeCCCCcCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKAS----------------ADSSGVTKTCEMKTTV-LKDGQVVNVIDTPGLFDS 86 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~----------------~~~~~~t~~~~~~~~~-~~~~~~~~l~Dtpg~~~~ 86 (231)
.+|+++|+.|+|||||++.|++....... ....+.|......... ......+.++||||..+
T Consensus 4 ~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~- 82 (188)
T PF00009_consen 4 RNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED- 82 (188)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH-
T ss_pred EEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc-
Confidence 68999999999999999999976532110 0113444444444444 12788999999999543
Q ss_pred CCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhhH-------HHHHhh--
Q 038053 87 SAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRGA-------TELRDQ-- 152 (231)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-------~~l~~~-- 152 (231)
+..........+|.+++|||+.+++...... .....|++ .++|++|.-. +++.+.
T Consensus 83 ----------f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~i-vvlNK~D~~~~~~~~~~~~~~~~l~ 151 (188)
T PF00009_consen 83 ----------FIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPII-VVLNKMDLIEKELEEIIEEIKEKLL 151 (188)
T ss_dssp ----------HHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEE-EEEETCTSSHHHHHHHHHHHHHHHH
T ss_pred ----------eeecccceecccccceeeeecccccccccccccccccccccceE-EeeeeccchhhhHHHHHHHHHHHhc
Confidence 3333444567889999999998788876655 23334432 2233333110 122211
Q ss_pred ---------ccchhhhhhhhHhhHHHHHHHHHHH
Q 038053 153 ---------QAEVDSLKEYSKQEISKLMGQMQES 177 (231)
Q Consensus 153 ---------~~~i~~is~~~~~~i~~l~~~i~~~ 177 (231)
.-+++++|+.+|.|+..|++.+...
T Consensus 152 ~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~ 185 (188)
T PF00009_consen 152 KEYGENGEEIVPVIPISALTGDGIDELLEALVEL 185 (188)
T ss_dssp HHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred cccccCccccceEEEEecCCCCCHHHHHHHHHHh
Confidence 1268899999999999999888764
No 77
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.35 E-value=1.7e-12 Score=100.20 Aligned_cols=118 Identities=21% Similarity=0.159 Sum_probs=73.6
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eE----EeeCCcEEE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TT----VLKDGQVVN 76 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~----~~~~~~~~~ 76 (231)
++.|++++++++++|++++| .+++|+|+||+|||||+++|+|...+ ..|.+....... .. ........+
T Consensus 7 ~~~~~~~~~l~~i~~~i~~G--~~~~i~G~nGsGKSTLl~~l~G~~~~----~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 80 (178)
T cd03229 7 SKRYGQKTVLNDVSLNIEAG--EIVALLGPSGSGKSTLLRCIAGLEEP----DSGSILIDGEDLTDLEDELPPLRRRIGM 80 (178)
T ss_pred EEEECCeEEEeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CceEEEECCEEccccchhHHHHhhcEEE
Confidence 45677788999999999999 99999999999999999999999763 333333222110 00 011345677
Q ss_pred EEeCCCCcCCCCCchHH------HHHHHHHHhhhcCCccEEEEEEECCCCCCHHH
Q 038053 77 VIDTPGLFDSSAGSEFV------GKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEE 125 (231)
Q Consensus 77 l~Dtpg~~~~~~~~~~~------~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~ 125 (231)
+.+.|.+++..+..+++ +..-+-.+..++.....++++-++..+++...
T Consensus 81 ~~q~~~~~~~~t~~~~l~~~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~ 135 (178)
T cd03229 81 VFQDFALFPHLTVLENIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPIT 135 (178)
T ss_pred EecCCccCCCCCHHHheeecCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHH
Confidence 88888887655544432 12222222333333335555666664444433
No 78
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.35 E-value=2.5e-12 Score=100.02 Aligned_cols=146 Identities=10% Similarity=0.047 Sum_probs=85.5
Q ss_pred cCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCC
Q 038053 10 IDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAG 89 (231)
Q Consensus 10 ~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~ 89 (231)
+++++++...+ .+|+++|++|||||||+|.+++...... ..|.......... .+..+.++|+||...
T Consensus 9 ~~~~~~~~~~~---~ki~ilG~~~~GKStLi~~l~~~~~~~~-----~~T~~~~~~~i~~-~~~~~~l~D~~G~~~---- 75 (190)
T cd00879 9 VLSSLGLYNKE---AKILFLGLDNAGKTTLLHMLKDDRLAQH-----VPTLHPTSEELTI-GNIKFKTFDLGGHEQ---- 75 (190)
T ss_pred HHHHhhcccCC---CEEEEECCCCCCHHHHHHHHhcCCCccc-----CCccCcceEEEEE-CCEEEEEEECCCCHH----
Confidence 45566666555 4899999999999999999998654211 1122222223333 567788999999542
Q ss_pred chHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH------h----cCCCCcHHHHHHHHHhh----HHHHHhhc--
Q 038053 90 SEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA------A----NGGQPYTDEFLAELKRG----ATELRDQQ-- 153 (231)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~------~----~~~~~~~~~~~~~~~~~----~~~l~~~~-- 153 (231)
+.......+..+|.+++|+|.++.-+..... . ....|++ .+.++.|.. ..++...+
T Consensus 76 -------~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvi-vv~NK~Dl~~~~~~~~~~~~~~~ 147 (190)
T cd00879 76 -------ARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFL-ILGNKIDLPGAVSEEELRQALGL 147 (190)
T ss_pred -------HHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEE-EEEeCCCCCCCcCHHHHHHHhCc
Confidence 1111223346789999999998432111111 1 1123333 334444421 02222211
Q ss_pred ------------------cchhhhhhhhHhhHHHHHHHHHH
Q 038053 154 ------------------AEVDSLKEYSKQEISKLMGQMQE 176 (231)
Q Consensus 154 ------------------~~i~~is~~~~~~i~~l~~~i~~ 176 (231)
-+++.+||.+|.|+.+++.-+.+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~ 188 (190)
T cd00879 148 YGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQ 188 (190)
T ss_pred ccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHh
Confidence 14677899999999998887654
No 79
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.35 E-value=1.9e-13 Score=108.11 Aligned_cols=86 Identities=24% Similarity=0.223 Sum_probs=68.6
Q ss_pred CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee----eEEeeCCcEEE
Q 038053 1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK----TTVLKDGQVVN 76 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~ 76 (231)
+||.|+++.+++++||++++| ..++|+|++||||||++++|.+...+ +.|.+....... .... +...+|
T Consensus 7 vsk~y~~~~av~~v~l~I~~g--ef~vliGpSGsGKTTtLkMINrLiep----t~G~I~i~g~~i~~~d~~~L-Rr~IGY 79 (309)
T COG1125 7 VSKRYGNKKAVDDVNLTIEEG--EFLVLIGPSGSGKTTTLKMINRLIEP----TSGEILIDGEDISDLDPVEL-RRKIGY 79 (309)
T ss_pred eehhcCCceeeeeeeEEecCC--eEEEEECCCCCcHHHHHHHHhcccCC----CCceEEECCeecccCCHHHH-HHhhhh
Confidence 589999999999999999999 99999999999999999999999884 444433322111 1122 457889
Q ss_pred EEeCCCCcCCCCCchHH
Q 038053 77 VIDTPGLFDSSAGSEFV 93 (231)
Q Consensus 77 l~Dtpg~~~~~~~~~~~ 93 (231)
+++.-|++++.++.+++
T Consensus 80 viQqigLFPh~Tv~eNI 96 (309)
T COG1125 80 VIQQIGLFPHLTVAENI 96 (309)
T ss_pred hhhhcccCCCccHHHHH
Confidence 99999999998877654
No 80
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.35 E-value=4e-12 Score=95.13 Aligned_cols=134 Identities=19% Similarity=0.164 Sum_probs=76.5
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhhc
Q 038053 26 VVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAK 105 (231)
Q Consensus 26 i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~ 105 (231)
|+|+|++|||||||+|.|++...... ...|.......... .+..+.++|+||... +.......+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~----~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~-----------~~~~~~~~~ 65 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSED----TIPTVGFNMRKVTK-GNVTLKVWDLGGQPR-----------FRSMWERYC 65 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcC----ccCCCCcceEEEEE-CCEEEEEEECCCCHh-----------HHHHHHHHH
Confidence 79999999999999999999864211 11122222222223 456788999999643 111222334
Q ss_pred CCccEEEEEEECCCCCCHHH--HH----h----cCCCCcHHHHHHHHHhhH----HHHHhhc---------cchhhhhhh
Q 038053 106 GGIHAVLVVFSVRSRFSQEE--EA----A----NGGQPYTDEFLAELKRGA----TELRDQQ---------AEVDSLKEY 162 (231)
Q Consensus 106 ~~~~~il~vvd~~~~~~~~~--~~----~----~~~~~~~~~~~~~~~~~~----~~l~~~~---------~~i~~is~~ 162 (231)
..+|.+++|+|+++..+... .. . ....|++ .++++.+... ..+.... .++..+|+.
T Consensus 66 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 144 (159)
T cd04159 66 RGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLL-VLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCK 144 (159)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEE-EEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEec
Confidence 67899999999984222111 00 0 1223332 2334333110 1111111 145778999
Q ss_pred hHhhHHHHHHHHHH
Q 038053 163 SKQEISKLMGQMQE 176 (231)
Q Consensus 163 ~~~~i~~l~~~i~~ 176 (231)
+|.|+++++..+.+
T Consensus 145 ~~~gi~~l~~~l~~ 158 (159)
T cd04159 145 EKTNIDIVLDWLIK 158 (159)
T ss_pred cCCChHHHHHHHhh
Confidence 99999998887653
No 81
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.34 E-value=3.9e-12 Score=97.26 Aligned_cols=135 Identities=17% Similarity=0.195 Sum_probs=78.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053 23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG 102 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~ 102 (231)
..+|+++|++|||||||++.|+|.......+. .+.+ ...... .+..+.++|+||... +.....
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t-~g~~----~~~i~~-~~~~~~~~D~~G~~~-----------~~~~~~ 76 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDISHITPT-QGFN----IKTVQS-DGFKLNVWDIGGQRA-----------IRPYWR 76 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCCcccCCC-CCcc----eEEEEE-CCEEEEEEECCCCHH-----------HHHHHH
Confidence 37999999999999999999999754222111 1111 222333 567788999999642 112222
Q ss_pred hhcCCccEEEEEEECCCCCCHHH--HH--------hcCCCCcHHHHHHHHHhh----HHHHHhhcc---------chhhh
Q 038053 103 LAKGGIHAVLVVFSVRSRFSQEE--EA--------ANGGQPYTDEFLAELKRG----ATELRDQQA---------EVDSL 159 (231)
Q Consensus 103 ~~~~~~~~il~vvd~~~~~~~~~--~~--------~~~~~~~~~~~~~~~~~~----~~~l~~~~~---------~i~~i 159 (231)
..+..+|.+++++|..+.-+..+ .. .....|++ .++++.|.. ...+.+.++ ++..+
T Consensus 77 ~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 155 (173)
T cd04155 77 NYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVL-VFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQAC 155 (173)
T ss_pred HHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEE-EEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEe
Confidence 33467899999999974211111 11 01122332 223333310 112222222 35678
Q ss_pred hhhhHhhHHHHHHHHH
Q 038053 160 KEYSKQEISKLMGQMQ 175 (231)
Q Consensus 160 s~~~~~~i~~l~~~i~ 175 (231)
|+++|+|++++++.+.
T Consensus 156 Sa~~~~gi~~~~~~l~ 171 (173)
T cd04155 156 SAKTGEGLQEGMNWVC 171 (173)
T ss_pred ECCCCCCHHHHHHHHh
Confidence 9999999999887664
No 82
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.34 E-value=1.1e-11 Score=95.83 Aligned_cols=140 Identities=17% Similarity=0.181 Sum_probs=82.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccC--------------CCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCc
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKASAD--------------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGS 90 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~ 90 (231)
+|+++|.+|||||||+|.|++......... ..+.|.......... .+..+.++||||....
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~liDtpG~~~~---- 75 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW-PDRRVNFIDTPGHEDF---- 75 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee-CCEEEEEEeCCCcHHH----
Confidence 489999999999999999998865322100 122333333333333 5677889999997541
Q ss_pred hHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhh-----------H-HHHHh--
Q 038053 91 EFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRG-----------A-TELRD-- 151 (231)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-----------~-~~l~~-- 151 (231)
.......+..+|++++|+|..+........ .....+++ .++++.|.. . +.+..
T Consensus 76 -------~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~-iv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 147 (189)
T cd00881 76 -------SSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPII-VAINKIDRVGEEDLEEVLREIKELLGLIG 147 (189)
T ss_pred -------HHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeE-EEEECCCCcchhcHHHHHHHHHHHHcccc
Confidence 111222335789999999998655544333 11122222 122222210 0 11111
Q ss_pred ------------hccchhhhhhhhHhhHHHHHHHHHHH
Q 038053 152 ------------QQAEVDSLKEYSKQEISKLMGQMQES 177 (231)
Q Consensus 152 ------------~~~~i~~is~~~~~~i~~l~~~i~~~ 177 (231)
...+++++|++.|.|+.+++..+...
T Consensus 148 ~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~ 185 (189)
T cd00881 148 FISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEH 185 (189)
T ss_pred ccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhh
Confidence 12367789999999999998877653
No 83
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.34 E-value=3.3e-13 Score=108.47 Aligned_cols=47 Identities=26% Similarity=0.291 Sum_probs=43.9
Q ss_pred CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053 1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF 49 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~ 49 (231)
++.+|+++.++++++|++++| ..++|+||||||||||+++|+|...+
T Consensus 8 ls~~y~~~~il~~ls~~i~~G--~i~~iiGpNG~GKSTLLk~l~g~l~p 54 (258)
T COG1120 8 LSFGYGGKPILDDLSFSIPKG--EITGILGPNGSGKSTLLKCLAGLLKP 54 (258)
T ss_pred EEEEECCeeEEecceEEecCC--cEEEEECCCCCCHHHHHHHHhccCCC
Confidence 356899999999999999999 99999999999999999999998874
No 84
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.34 E-value=6.4e-13 Score=112.40 Aligned_cols=87 Identities=23% Similarity=0.191 Sum_probs=64.5
Q ss_pred CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee--EEeeCCcEEEEE
Q 038053 1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT--TVLKDGQVVNVI 78 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~l~ 78 (231)
+++.|++..++++++|++++| .++||+|+||||||||+++|+|...+ +.|.+........ ........++++
T Consensus 47 l~k~y~~~~~l~~is~~i~~G--ei~gLlGpNGaGKSTLl~~L~Gl~~p----~~G~i~i~G~~~~~~~~~~~~~ig~v~ 120 (340)
T PRK13536 47 VSKSYGDKAVVNGLSFTVASG--ECFGLLGPNGAGKSTIARMILGMTSP----DAGKITVLGVPVPARARLARARIGVVP 120 (340)
T ss_pred EEEEECCEEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHcCCCC----CceEEEECCEECCcchHHHhccEEEEe
Confidence 367889889999999999999 99999999999999999999999873 4443333221110 001135678899
Q ss_pred eCCCCcCCCCCchHH
Q 038053 79 DTPGLFDSSAGSEFV 93 (231)
Q Consensus 79 Dtpg~~~~~~~~~~~ 93 (231)
|.+.+++..+..+.+
T Consensus 121 q~~~~~~~~tv~e~l 135 (340)
T PRK13536 121 QFDNLDLEFTVRENL 135 (340)
T ss_pred CCccCCCCCcHHHHH
Confidence 999988766655443
No 85
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.34 E-value=2.7e-12 Score=104.53 Aligned_cols=150 Identities=15% Similarity=0.187 Sum_probs=90.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
..|++||++|||||||+|.|++...... +.-.-|.++..+....+.+..+.+.||.||.... ...+...|...+..
T Consensus 179 pviavVGYTNaGKsTLikaLT~Aal~p~--drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdL--P~~LvaAF~ATLee 254 (410)
T KOG0410|consen 179 PVIAVVGYTNAGKSTLIKALTKAALYPN--DRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDL--PIQLVAAFQATLEE 254 (410)
T ss_pred ceEEEEeecCccHHHHHHHHHhhhcCcc--chhheeccchhhhccCCCCcEEEEeechhhhhhC--cHHHHHHHHHHHHH
Confidence 6999999999999999999997654322 2223344444444445578889999999998633 23333444433333
Q ss_pred hcCCccEEEEEEECCCCCCHHHHH-----hcC-C---CCcHH---HHHHHHHhhHHHHHhhccchhhhhhhhHhhHHHHH
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEEEA-----ANG-G---QPYTD---EFLAELKRGATELRDQQAEVDSLKEYSKQEISKLM 171 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~~~-----~~~-~---~~~~~---~~~~~~~~~~~~l~~~~~~i~~is~~~~~~i~~l~ 171 (231)
...+|++++|+|.+.+.-.+.+. .+. + .|... .+-++++.+...+.+--+..+.+|+.+|.|+++++
T Consensus 255 -VaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E~n~~v~isaltgdgl~el~ 333 (410)
T KOG0410|consen 255 -VAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEEKNLDVGISALTGDGLEELL 333 (410)
T ss_pred -HhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCccccCCccccccccCccHHHHH
Confidence 26789999999998433222222 111 1 12221 12222221111111111136778999999999999
Q ss_pred HHHHHHH
Q 038053 172 GQMQESY 178 (231)
Q Consensus 172 ~~i~~~~ 178 (231)
+.+....
T Consensus 334 ~a~~~kv 340 (410)
T KOG0410|consen 334 KAEETKV 340 (410)
T ss_pred HHHHHHh
Confidence 9887643
No 86
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.34 E-value=4.7e-12 Score=99.79 Aligned_cols=140 Identities=11% Similarity=0.096 Sum_probs=80.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCc-cccccCCCCcceeeeeeeEEee--------------------------------C
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKA-FKASADSSGVTKTCEMKTTVLK--------------------------------D 71 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~--------------------------------~ 71 (231)
+||++|++|+|||||+.+|++... ...+....+.|.........+. .
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL 81 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence 699999999999999999998732 1111112222222221111110 1
Q ss_pred CcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCC-CCHHHHH------hcCCCCcHHHHHHHHHh
Q 038053 72 GQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSR-FSQEEEA------ANGGQPYTDEFLAELKR 144 (231)
Q Consensus 72 ~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~-~~~~~~~------~~~~~~~~~~~~~~~~~ 144 (231)
...+.++||||.. .+...+......+|.+++|+|+.+. ....... .....+++ .+++++|.
T Consensus 82 ~~~i~~iDtPG~~-----------~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~ii-ivvNK~Dl 149 (203)
T cd01888 82 VRHVSFVDCPGHE-----------ILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHII-IVQNKIDL 149 (203)
T ss_pred ccEEEEEECCChH-----------HHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEE-EEEEchhc
Confidence 2678899999942 2334444455678999999999853 2222111 11222332 34444442
Q ss_pred hH--------HHHHhhc-------cchhhhhhhhHhhHHHHHHHHHH
Q 038053 145 GA--------TELRDQQ-------AEVDSLKEYSKQEISKLMGQMQE 176 (231)
Q Consensus 145 ~~--------~~l~~~~-------~~i~~is~~~~~~i~~l~~~i~~ 176 (231)
.. +.+.+.+ .+++++|+++|.|++.++..+.+
T Consensus 150 ~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~ 196 (203)
T cd01888 150 VKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVK 196 (203)
T ss_pred cCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHH
Confidence 10 1233222 15778999999999999887765
No 87
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.34 E-value=1.5e-11 Score=93.13 Aligned_cols=138 Identities=14% Similarity=0.126 Sum_probs=78.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee--eEEe-eCCcEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK--TTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~--~~~~-~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
+|+++|.+|||||||++.+++..-. .....|...... .... .....+.+.||||... +....
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~~~~ 66 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYE----PQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQER-----------FQTMH 66 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC----CCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchh-----------hhhhh
Confidence 6899999999999999998876531 111112111111 1111 0233567899999543 11122
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH--------hcCCCCcHHHHHHHHHhhH------HHHHhhc-cchhhhhhhhHhh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------ANGGQPYTDEFLAELKRGA------TELRDQQ-AEVDSLKEYSKQE 166 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~------~~l~~~~-~~i~~is~~~~~~ 166 (231)
...+..+|++++|+|++++.+..+.. .....|++ .+.++.|... ..+.... .+++.+|+++|.|
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~i-vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 145 (161)
T cd04124 67 ASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCI-VVANKIDLDPSVTQKKFNFAEKHNLPLYYVSAADGTN 145 (161)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEE-EEEECccCchhHHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 33456889999999998554433321 11123333 3334433110 1121111 2567889999999
Q ss_pred HHHHHHHHHHHH
Q 038053 167 ISKLMGQMQESY 178 (231)
Q Consensus 167 i~~l~~~i~~~~ 178 (231)
+++++..+.+..
T Consensus 146 v~~l~~~l~~~~ 157 (161)
T cd04124 146 VVKLFQDAIKLA 157 (161)
T ss_pred HHHHHHHHHHHH
Confidence 999988887643
No 88
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.33 E-value=3.8e-13 Score=105.08 Aligned_cols=87 Identities=22% Similarity=0.190 Sum_probs=65.2
Q ss_pred CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee----EEeeCCcEEE
Q 038053 1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT----TVLKDGQVVN 76 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~ 76 (231)
++..||..+++++++|++++| .+++|+|+||||||||+++|+|...+. .|.++....... .........+
T Consensus 9 l~~~YG~~~~L~gvsl~v~~G--eiv~llG~NGaGKTTlLkti~Gl~~~~----~G~I~~~G~dit~~p~~~r~r~Gi~~ 82 (237)
T COG0410 9 LSAGYGKIQALRGVSLEVERG--EIVALLGRNGAGKTTLLKTIMGLVRPR----SGRIIFDGEDITGLPPHERARLGIAY 82 (237)
T ss_pred EeecccceeEEeeeeeEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCC----CeeEEECCeecCCCCHHHHHhCCeEe
Confidence 356899999999999999999 999999999999999999999998743 333332211100 0011345678
Q ss_pred EEeCCCCcCCCCCchHH
Q 038053 77 VIDTPGLFDSSAGSEFV 93 (231)
Q Consensus 77 l~Dtpg~~~~~~~~~~~ 93 (231)
+++.-.+|+..++.+++
T Consensus 83 VPegR~iF~~LTVeENL 99 (237)
T COG0410 83 VPEGRRIFPRLTVEENL 99 (237)
T ss_pred CcccccchhhCcHHHHH
Confidence 99999999988776665
No 89
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.33 E-value=4.1e-12 Score=95.91 Aligned_cols=135 Identities=10% Similarity=0.070 Sum_probs=78.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhh
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLA 104 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~ 104 (231)
+|+++|.+|||||||++.+++...... ....|.......... .+..+.++||||.... .......
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~---~~~~t~g~~~~~~~~-~~~~~~l~Dt~G~~~~-----------~~~~~~~ 65 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQ---IIVPTVGFNVESFEK-GNLSFTAFDMSGQGKY-----------RGLWEHY 65 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcc---eecCccccceEEEEE-CCEEEEEEECCCCHhh-----------HHHHHHH
Confidence 489999999999999999998643211 111111111112222 5677889999996531 1111223
Q ss_pred cCCccEEEEEEECCCCCCHHHHH-------h-----cCCCCcHHHHHHHHHhhH----HHHHhhc--------c-chhhh
Q 038053 105 KGGIHAVLVVFSVRSRFSQEEEA-------A-----NGGQPYTDEFLAELKRGA----TELRDQQ--------A-EVDSL 159 (231)
Q Consensus 105 ~~~~~~il~vvd~~~~~~~~~~~-------~-----~~~~~~~~~~~~~~~~~~----~~l~~~~--------~-~i~~i 159 (231)
+..+|++++|+|.++..+..... . ....|++ .++++.|... ..+...+ + +++.+
T Consensus 66 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-iv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 144 (162)
T cd04157 66 YKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPIL-FFANKMDLPDALTAVKITQLLGLENIKDKPWHIFAS 144 (162)
T ss_pred HccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEE-EEEeCccccCCCCHHHHHHHhCCccccCceEEEEEe
Confidence 46789999999998543221100 0 1234443 4455544211 1222211 1 36779
Q ss_pred hhhhHhhHHHHHHHHH
Q 038053 160 KEYSKQEISKLMGQMQ 175 (231)
Q Consensus 160 s~~~~~~i~~l~~~i~ 175 (231)
||++|.|++++++.+.
T Consensus 145 Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 145 NALTGEGLDEGVQWLQ 160 (162)
T ss_pred eCCCCCchHHHHHHHh
Confidence 9999999999988764
No 90
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.33 E-value=1e-11 Score=93.72 Aligned_cols=137 Identities=13% Similarity=0.084 Sum_probs=80.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRIG 102 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~ 102 (231)
+|+++|++|||||||+|.+++...... ..+..+.+........ .+ ..+.++||||... +.....
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~l~~~D~~G~~~-----------~~~~~~ 67 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQ--YQATIGIDFLSKTMYL-EDKTVRLQLWDTAGQER-----------FRSLIP 67 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcc--CCCceeeeEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHHHHH
Confidence 699999999999999999998865321 2333333333332333 23 3578999999432 111222
Q ss_pred hhcCCccEEEEEEECCCCCCHHHHH-------hcC--CCCcHHHHHHHHHh-hH--------HHHHhhc-cchhhhhhhh
Q 038053 103 LAKGGIHAVLVVFSVRSRFSQEEEA-------ANG--GQPYTDEFLAELKR-GA--------TELRDQQ-AEVDSLKEYS 163 (231)
Q Consensus 103 ~~~~~~~~il~vvd~~~~~~~~~~~-------~~~--~~~~~~~~~~~~~~-~~--------~~l~~~~-~~i~~is~~~ 163 (231)
..+..+|++++|+|++++-+..+.. ... ..|.+ .+.++.+. +. ..+.... -+++.+|+.+
T Consensus 68 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ii-lv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 146 (161)
T cd01861 68 SYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIV-LVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKA 146 (161)
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEE-EEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCC
Confidence 3346789999999998542222211 111 23333 33344332 10 1111111 2567789999
Q ss_pred HhhHHHHHHHHHH
Q 038053 164 KQEISKLMGQMQE 176 (231)
Q Consensus 164 ~~~i~~l~~~i~~ 176 (231)
+.|+++++..+.+
T Consensus 147 ~~~v~~l~~~i~~ 159 (161)
T cd01861 147 GHNVKELFRKIAS 159 (161)
T ss_pred CCCHHHHHHHHHH
Confidence 9999999988765
No 91
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.33 E-value=1.4e-11 Score=98.60 Aligned_cols=94 Identities=23% Similarity=0.233 Sum_probs=62.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 22 GKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 22 ~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
.+.+|.|+|.+|||||||+|+|++-..... ...+.++. ........+.+....+.||||+.++... ..+....+
T Consensus 38 ~pvnvLi~G~TG~GKSSliNALF~~~~~~v-~~vg~~t~-~~~~~~~~~~~~~l~lwDtPG~gdg~~~----D~~~r~~~ 111 (296)
T COG3596 38 EPVNVLLMGATGAGKSSLINALFQGEVKEV-SKVGVGTD-ITTRLRLSYDGENLVLWDTPGLGDGKDK----DAEHRQLY 111 (296)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhccCcee-eecccCCC-chhhHHhhccccceEEecCCCcccchhh----hHHHHHHH
Confidence 347888999999999999999995433221 11222222 2122222225678889999999985432 33455556
Q ss_pred hhhcCCccEEEEEEECCCCC
Q 038053 102 GLAKGGIHAVLVVFSVRSRF 121 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~ 121 (231)
...+++.|.+++++++.++.
T Consensus 112 ~d~l~~~DLvL~l~~~~dra 131 (296)
T COG3596 112 RDYLPKLDLVLWLIKADDRA 131 (296)
T ss_pred HHHhhhccEEEEeccCCCcc
Confidence 66678889999999997653
No 92
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.33 E-value=8.6e-13 Score=110.28 Aligned_cols=87 Identities=18% Similarity=0.152 Sum_probs=64.8
Q ss_pred CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE--EeeCCcEEEEE
Q 038053 1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT--VLKDGQVVNVI 78 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~l~ 78 (231)
+++.|++..++++++|++++| .+++|+|+||||||||+++|+|...+ +.|.+......... .......++++
T Consensus 13 l~k~~~~~~~l~~vsl~i~~G--ei~gllGpNGaGKSTLl~~l~Gl~~p----~~G~v~i~G~~~~~~~~~~~~~ig~v~ 86 (306)
T PRK13537 13 VEKRYGDKLVVDGLSFHVQRG--ECFGLLGPNGAGKTTTLRMLLGLTHP----DAGSISLCGEPVPSRARHARQRVGVVP 86 (306)
T ss_pred EEEEECCeEEEecceEEEeCC--cEEEEECCCCCCHHHHHHHHhcCCCC----CceEEEECCEecccchHHHHhcEEEEe
Confidence 367888889999999999999 99999999999999999999999873 44433332211100 01135678999
Q ss_pred eCCCCcCCCCCchHH
Q 038053 79 DTPGLFDSSAGSEFV 93 (231)
Q Consensus 79 Dtpg~~~~~~~~~~~ 93 (231)
+.|++++..+..+.+
T Consensus 87 q~~~~~~~~tv~e~l 101 (306)
T PRK13537 87 QFDNLDPDFTVRENL 101 (306)
T ss_pred ccCcCCCCCcHHHHH
Confidence 999998866655544
No 93
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.32 E-value=7.8e-12 Score=95.53 Aligned_cols=135 Identities=14% Similarity=0.051 Sum_probs=79.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhh
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLA 104 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~ 104 (231)
+|+++|.+|||||||++.+++... .. ...|.......... .+..+.++||||..... ......
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~----~~-~~~T~~~~~~~~~~-~~~~i~l~Dt~G~~~~~-----------~~~~~~ 63 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF----MQ-PIPTIGFNVETVEY-KNLKFTIWDVGGKHKLR-----------PLWKHY 63 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC----CC-cCCcCceeEEEEEE-CCEEEEEEECCCChhcc-----------hHHHHH
Confidence 488999999999999999998743 11 22333333333333 56788899999975311 112223
Q ss_pred cCCccEEEEEEECCCCCCHHHHH------h----cCCCCcHHHHHHHHHhhH----HHHHhhc------c----chhhhh
Q 038053 105 KGGIHAVLVVFSVRSRFSQEEEA------A----NGGQPYTDEFLAELKRGA----TELRDQQ------A----EVDSLK 160 (231)
Q Consensus 105 ~~~~~~il~vvd~~~~~~~~~~~------~----~~~~~~~~~~~~~~~~~~----~~l~~~~------~----~i~~is 160 (231)
+..+|++++|+|+++.-+..+.. . ....|++ .+.++.|... +.+...+ . .+..+|
T Consensus 64 ~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~pii-lv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 142 (169)
T cd04158 64 YLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLL-IFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCD 142 (169)
T ss_pred hccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEE-EEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCc
Confidence 46789999999998532221111 1 1112332 3444443210 1222111 1 355679
Q ss_pred hhhHhhHHHHHHHHHHH
Q 038053 161 EYSKQEISKLMGQMQES 177 (231)
Q Consensus 161 ~~~~~~i~~l~~~i~~~ 177 (231)
|++|.|+.+++..+.+.
T Consensus 143 a~~g~gv~~~f~~l~~~ 159 (169)
T cd04158 143 ARSGMGLYEGLDWLSRQ 159 (169)
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 99999999998877553
No 94
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.32 E-value=2.1e-11 Score=95.20 Aligned_cols=140 Identities=11% Similarity=0.153 Sum_probs=82.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC------ccccccCCCCcceeeeeeeEEee-------------CCcEEEEEeCCCCcC
Q 038053 25 TVVLLGRTGNGKSATGNSILGRK------AFKASADSSGVTKTCEMKTTVLK-------------DGQVVNVIDTPGLFD 85 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~------~~~~~~~~~~~t~~~~~~~~~~~-------------~~~~~~l~Dtpg~~~ 85 (231)
+|+++|++|+|||||++++++.. .... ....+.|.........+. .+..+.++||||...
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~-e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQ-SQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccchhhhccCHH-HHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 69999999999999999999741 1000 112344444333322221 256789999999742
Q ss_pred CCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhh--------HHHH---
Q 038053 86 SSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRG--------ATEL--- 149 (231)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~--------~~~l--- 149 (231)
+...+......+|.+++|+|+.++.+..+.. .....+++ .+++++|.. .+.+
T Consensus 81 -----------~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~i-iv~NK~Dl~~~~~~~~~~~~~~~~ 148 (192)
T cd01889 81 -----------LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLI-VVLNKIDLIPEEERERKIEKMKKK 148 (192)
T ss_pred -----------HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEE-EEEECcccCCHHHHHHHHHHHHHH
Confidence 2222333346789999999998665544321 11233433 233333310 0111
Q ss_pred -Hhhc------c-chhhhhhhhHhhHHHHHHHHHHH
Q 038053 150 -RDQQ------A-EVDSLKEYSKQEISKLMGQMQES 177 (231)
Q Consensus 150 -~~~~------~-~i~~is~~~~~~i~~l~~~i~~~ 177 (231)
...+ . +++++|+++|.|+++|+..+...
T Consensus 149 l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~ 184 (192)
T cd01889 149 LQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNL 184 (192)
T ss_pred HHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhc
Confidence 1111 1 67889999999999998887653
No 95
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.32 E-value=2.3e-12 Score=95.48 Aligned_cols=127 Identities=15% Similarity=0.270 Sum_probs=74.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhh
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLA 104 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~ 104 (231)
+|+++|++|+|||||+|.+++.... ..+ |.. ..+ .. .++||||.+.. .......+...
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~----~~~--t~~-----~~~-~~---~~iDt~G~~~~-------~~~~~~~~~~~ 59 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL----YKK--TQA-----VEY-ND---GAIDTPGEYVE-------NRRLYSALIVT 59 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc----ccc--cee-----EEE-cC---eeecCchhhhh-------hHHHHHHHHHH
Confidence 6999999999999999999988641 111 211 111 12 47999997421 11122222234
Q ss_pred cCCccEEEEEEECCCCCCHHHHH--hcCCCCcHHHHHHHHHhhH--------HHHHhhc--cchhhhhhhhHhhHHHHHH
Q 038053 105 KGGIHAVLVVFSVRSRFSQEEEA--ANGGQPYTDEFLAELKRGA--------TELRDQQ--AEVDSLKEYSKQEISKLMG 172 (231)
Q Consensus 105 ~~~~~~il~vvd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--------~~l~~~~--~~i~~is~~~~~~i~~l~~ 172 (231)
+..+|++++|+|+++..+..+.. .....|.+ .++++.|... ..+.... .+++.+|+++|.|+++++.
T Consensus 60 ~~~ad~vilv~d~~~~~s~~~~~~~~~~~~p~i-lv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 138 (142)
T TIGR02528 60 AADADVIALVQSATDPESRFPPGFASIFVKPVI-GLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQGLEALVD 138 (142)
T ss_pred hhcCCEEEEEecCCCCCcCCChhHHHhccCCeE-EEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence 68899999999997554432221 11122333 2334444210 1111111 2567789999999999887
Q ss_pred HH
Q 038053 173 QM 174 (231)
Q Consensus 173 ~i 174 (231)
.+
T Consensus 139 ~l 140 (142)
T TIGR02528 139 YL 140 (142)
T ss_pred HH
Confidence 65
No 96
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.31 E-value=9e-13 Score=106.17 Aligned_cols=85 Identities=21% Similarity=0.175 Sum_probs=60.9
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eE-----EeeCCcEE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TT-----VLKDGQVV 75 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~-----~~~~~~~~ 75 (231)
++.|++..++++++|++.+| .+++|+|+||||||||+++|+|...+ ..|.++...... .. ........
T Consensus 7 ~~~~~~~~~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~p----~~G~i~~~g~~~~~~~~~~~~~~~~~i~ 80 (235)
T cd03261 7 TKSFGGRTVLKGVDLDVRRG--EILAIIGPSGSGKSTLLRLIVGLLRP----DSGEVLIDGEDISGLSEAELYRLRRRMG 80 (235)
T ss_pred EEEECCEEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CceEEEECCEEccccChhhHHHHhcceE
Confidence 56788888999999999999 99999999999999999999999873 344333322110 00 00123467
Q ss_pred EEEeCCCCcCCCCCchH
Q 038053 76 NVIDTPGLFDSSAGSEF 92 (231)
Q Consensus 76 ~l~Dtpg~~~~~~~~~~ 92 (231)
++++.|.+++..+..++
T Consensus 81 ~v~q~~~~~~~~tv~~~ 97 (235)
T cd03261 81 MLFQSGALFDSLTVFEN 97 (235)
T ss_pred EEccCcccCCCCcHHHH
Confidence 88888888775554443
No 97
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.31 E-value=1.4e-11 Score=95.39 Aligned_cols=140 Identities=14% Similarity=0.116 Sum_probs=78.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEe--eCCcEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVL--KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
.+|+++|.+|||||||++.+++...... ....+.+. ....... ..+..+.+.||||... +....
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~--~~~~~~~~~~~~~~l~l~Dt~G~~~-----------~~~~~ 69 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNT--EKIKVSLGNSKGITFHFWDVGGQEK-----------LRPLW 69 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccce--eEEEeeccCCCceEEEEEECCCcHh-----------HHHHH
Confidence 6899999999999999999987653211 11111111 1111111 1345688999999532 11112
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH----------hcCCCCcHHHHHHHHHhhH----HHHHhh------c----cchh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA----------ANGGQPYTDEFLAELKRGA----TELRDQ------Q----AEVD 157 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~----~~l~~~------~----~~i~ 157 (231)
...+..+|++++|+|+++.-+..+.. .....|++ .++++.|... ..+... . .++.
T Consensus 70 ~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~i-iv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (183)
T cd04152 70 KSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVL-VLANKQDLPNALSVSEVEKLLALHELSASTPWHVQ 148 (183)
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEE-EEEECcCccccCCHHHHHHHhCccccCCCCceEEE
Confidence 23356789999999998431111110 11223443 3444443210 122211 1 1366
Q ss_pred hhhhhhHhhHHHHHHHHHHHH
Q 038053 158 SLKEYSKQEISKLMGQMQESY 178 (231)
Q Consensus 158 ~is~~~~~~i~~l~~~i~~~~ 178 (231)
++||.++.|+++++..+....
T Consensus 149 ~~SA~~~~gi~~l~~~l~~~l 169 (183)
T cd04152 149 PACAIIGEGLQEGLEKLYEMI 169 (183)
T ss_pred EeecccCCCHHHHHHHHHHHH
Confidence 799999999999988876543
No 98
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.31 E-value=1.3e-12 Score=104.50 Aligned_cols=74 Identities=20% Similarity=0.192 Sum_probs=53.4
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCC
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTP 81 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtp 81 (231)
+..|+..++++|++|++++| ..++|+||||||||||+++|+|... +..|.+..............+..|++|-.
T Consensus 11 ~v~y~~~~vl~~i~l~v~~G--~~~~iiGPNGaGKSTLlK~iLGll~----p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~ 84 (254)
T COG1121 11 TVSYGNRPVLEDISLSVEKG--EITALIGPNGAGKSTLLKAILGLLK----PSSGEIKIFGKPVRKRRKRLRIGYVPQKS 84 (254)
T ss_pred EEEECCEeeeeccEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCc----CCcceEEEccccccccccCCeEEEcCccc
Confidence 45778557999999999999 9999999999999999999999877 34444443322111111124567777744
No 99
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.31 E-value=3.9e-12 Score=97.80 Aligned_cols=141 Identities=15% Similarity=0.222 Sum_probs=81.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccc------c-cC------CCCcceeeeeeeEEe----eCCcEEEEEeCCCCcCCC
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKA------S-AD------SSGVTKTCEMKTTVL----KDGQVVNVIDTPGLFDSS 87 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~------~-~~------~~~~t~~~~~~~~~~----~~~~~~~l~Dtpg~~~~~ 87 (231)
+|+++|.+|+|||||++.+++...... . .. ..++|.........+ .....+.++||||....
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~- 80 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF- 80 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh-
Confidence 699999999999999999987532110 0 00 112332222111111 13456779999998652
Q ss_pred CCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhh---H----HHHHhhcc-
Q 038053 88 AGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRG---A----TELRDQQA- 154 (231)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~---~----~~l~~~~~- 154 (231)
... ....+..+|++++|+|++++.+..+.. .....+++ .+++++|.. . ..+.+.++
T Consensus 81 ------~~~----~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~ii-iv~NK~Dl~~~~~~~~~~~~~~~~~~ 149 (179)
T cd01890 81 ------SYE----VSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEII-PVINKIDLPSADPERVKQQIEDVLGL 149 (179)
T ss_pred ------HHH----HHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEE-EEEECCCCCcCCHHHHHHHHHHHhCC
Confidence 111 222345689999999998665544332 12233333 344444421 0 13333222
Q ss_pred ---chhhhhhhhHhhHHHHHHHHHHH
Q 038053 155 ---EVDSLKEYSKQEISKLMGQMQES 177 (231)
Q Consensus 155 ---~i~~is~~~~~~i~~l~~~i~~~ 177 (231)
.++.+|+++|.|+++++..+...
T Consensus 150 ~~~~~~~~Sa~~g~gi~~l~~~l~~~ 175 (179)
T cd01890 150 DPSEAILVSAKTGLGVEDLLEAIVER 175 (179)
T ss_pred CcccEEEeeccCCCCHHHHHHHHHhh
Confidence 36789999999999998887653
No 100
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.30 E-value=2e-12 Score=103.09 Aligned_cols=83 Identities=22% Similarity=0.079 Sum_probs=60.2
Q ss_pred CCCCCC----cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEE
Q 038053 2 SSGMGE----RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNV 77 (231)
Q Consensus 2 ~~~~~~----~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l 77 (231)
++.|++ ++++++++|++++| .+++|+|+||||||||+++|+|...+ ..|.++....... .. .....++
T Consensus 7 ~~~~~~~~~~~~il~~vs~~i~~G--~~~~i~G~nGsGKSTLl~~l~Gl~~~----~~G~i~~~g~~~~-~~-~~~i~~v 78 (220)
T cd03293 7 SKTYGGGGGAVTALEDISLSVEEG--EFVALVGPSGCGKSTLLRIIAGLERP----TSGEVLVDGEPVT-GP-GPDRGYV 78 (220)
T ss_pred EEEcCCCCcceEEEeceeEEEeCC--cEEEEECCCCCCHHHHHHHHhCCCCC----CceEEEECCEECc-cc-cCcEEEE
Confidence 556776 68999999999999 99999999999999999999999763 3443333221110 11 3456788
Q ss_pred EeCCCCcCCCCCchH
Q 038053 78 IDTPGLFDSSAGSEF 92 (231)
Q Consensus 78 ~Dtpg~~~~~~~~~~ 92 (231)
++.|.+++..+..++
T Consensus 79 ~q~~~~~~~~tv~e~ 93 (220)
T cd03293 79 FQQDALLPWLTVLDN 93 (220)
T ss_pred ecccccccCCCHHHH
Confidence 898888775554433
No 101
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.30 E-value=9.4e-13 Score=104.24 Aligned_cols=83 Identities=20% Similarity=0.179 Sum_probs=59.6
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCC
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTP 81 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtp 81 (231)
++.|+++.++++++|++.+| .+++|+|+||||||||+++|+|...+ ..|.++.......... .....++++.|
T Consensus 7 ~~~~~~~~~l~~v~~~i~~G--~~~~i~G~nGsGKSTLl~~l~G~~~~----~~G~i~~~g~~~~~~~-~~~i~~~~q~~ 79 (210)
T cd03269 7 TKRFGRVTALDDISFSVEKG--EIFGLLGPNGAGKTTTIRMILGIILP----DSGEVLFDGKPLDIAA-RNRIGYLPEER 79 (210)
T ss_pred EEEECCEEEEeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCC----CceEEEECCCchhHHH-HccEEEeccCC
Confidence 56677788999999999999 99999999999999999999999763 3333332211100011 34567788888
Q ss_pred CCcCCCCCch
Q 038053 82 GLFDSSAGSE 91 (231)
Q Consensus 82 g~~~~~~~~~ 91 (231)
.+++..+..+
T Consensus 80 ~~~~~~tv~e 89 (210)
T cd03269 80 GLYPKMKVID 89 (210)
T ss_pred cCCcCCcHHH
Confidence 8877554433
No 102
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.30 E-value=9.7e-12 Score=95.50 Aligned_cols=134 Identities=10% Similarity=0.073 Sum_probs=79.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
.+|+++|++|+|||||++.+++...... ..|.......... .+..+.++||||... +......
T Consensus 16 ~kv~~~G~~~~GKTsl~~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~l~D~~G~~~-----------~~~~~~~ 78 (174)
T cd04153 16 YKVIIVGLDNAGKTTILYQFLLGEVVHT-----SPTIGSNVEEIVY-KNIRFLMWDIGGQES-----------LRSSWNT 78 (174)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCCCc-----CCccccceEEEEE-CCeEEEEEECCCCHH-----------HHHHHHH
Confidence 7899999999999999999987543211 1122222222333 567789999999753 1111223
Q ss_pred hcCCccEEEEEEECCCCCCHHHHH------hc----CCCCcHHHHHHHHHhh----HHHHHhhcc---------chhhhh
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEEEA------AN----GGQPYTDEFLAELKRG----ATELRDQQA---------EVDSLK 160 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~----~~~l~~~~~---------~i~~is 160 (231)
.+..+|++++|+|.++.-+..... .. ...|++ .++++.|.. ..++...+. ++..+|
T Consensus 79 ~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~v-iv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~S 157 (174)
T cd04153 79 YYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLL-VLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCC 157 (174)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEE-EEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecc
Confidence 346789999999998542211111 11 123332 344444321 012222211 467799
Q ss_pred hhhHhhHHHHHHHHH
Q 038053 161 EYSKQEISKLMGQMQ 175 (231)
Q Consensus 161 ~~~~~~i~~l~~~i~ 175 (231)
|.+|.|+++++..+.
T Consensus 158 A~~g~gi~e~~~~l~ 172 (174)
T cd04153 158 ALTGEGLPEGLDWIA 172 (174)
T ss_pred cCCCCCHHHHHHHHh
Confidence 999999999887764
No 103
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.30 E-value=2.2e-12 Score=101.81 Aligned_cols=81 Identities=20% Similarity=0.090 Sum_probs=61.5
Q ss_pred cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-------eEEeeCCcEEEEEeC
Q 038053 8 RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-------TTVLKDGQVVNVIDT 80 (231)
Q Consensus 8 ~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-------~~~~~~~~~~~l~Dt 80 (231)
..+|++++|.+++| ..++|+||+|||||||+|.|.|.+.+ +.|.+....... .........++++|.
T Consensus 18 ~~~L~~v~l~i~~G--e~vaI~GpSGSGKSTLLniig~ld~p----t~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~ 91 (226)
T COG1136 18 VEALKDVNLEIEAG--EFVAIVGPSGSGKSTLLNLLGGLDKP----TSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQN 91 (226)
T ss_pred eEecccceEEEcCC--CEEEEECCCCCCHHHHHHHHhcccCC----CCceEEECCEEcCcCCHHHHHHHHHHhEEEECcc
Confidence 47899999999999 99999999999999999999999984 333323222111 011224568999999
Q ss_pred CCCcCCCCCchHHH
Q 038053 81 PGLFDSSAGSEFVG 94 (231)
Q Consensus 81 pg~~~~~~~~~~~~ 94 (231)
.++.+..++.+++.
T Consensus 92 ~nLl~~ltv~ENv~ 105 (226)
T COG1136 92 FNLLPDLTVLENVE 105 (226)
T ss_pred CCCCCCCCHHHHHH
Confidence 99999888777654
No 104
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.30 E-value=2.2e-12 Score=103.01 Aligned_cols=85 Identities=22% Similarity=0.223 Sum_probs=61.3
Q ss_pred CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE-E---eeCCcEEE
Q 038053 1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT-V---LKDGQVVN 76 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~-~---~~~~~~~~ 76 (231)
+++.|++.+++++++|++.+| .+++|+|+||||||||+++|+|... +..|.++.+...... . .......+
T Consensus 6 l~~~~~~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~----~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (222)
T cd03224 6 LNAGYGKSQILFGVSLTVPEG--EIVALLGRNGAGKTTLLKTIMGLLP----PRSGSIRFDGRDITGLPPHERARAGIGY 79 (222)
T ss_pred EEeecCCeeEeeeeeEEEcCC--eEEEEECCCCCCHHHHHHHHhCCCC----CCCceEEECCEEcCCCCHHHHHhcCeEE
Confidence 356788888999999999999 9999999999999999999999987 344444433221100 0 00234678
Q ss_pred EEeCCCCcCCCCCch
Q 038053 77 VIDTPGLFDSSAGSE 91 (231)
Q Consensus 77 l~Dtpg~~~~~~~~~ 91 (231)
+++.|.+++..+..+
T Consensus 80 ~~q~~~~~~~~t~~~ 94 (222)
T cd03224 80 VPEGRRIFPELTVEE 94 (222)
T ss_pred eccccccCCCCcHHH
Confidence 888888877544433
No 105
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.30 E-value=8.2e-12 Score=94.20 Aligned_cols=134 Identities=14% Similarity=0.128 Sum_probs=77.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhh
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLA 104 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~ 104 (231)
+|+++|++|||||||+|.+++.......+ |...............+.+.||||... +.......
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~-----t~~~~~~~~~~~~~~~l~i~D~~G~~~-----------~~~~~~~~ 64 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIP-----TVGFNVEMLQLEKHLSLTVWDVGGQEK-----------MRTVWKCY 64 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccC-----ccCcceEEEEeCCceEEEEEECCCCHh-----------HHHHHHHH
Confidence 48999999999999999999886532211 111112222222345788999999653 11112223
Q ss_pred cCCccEEEEEEECCCCCCHHHHH------hc----CCCCcHHHHHHHHHhh----HHHHHhhc------c----chhhhh
Q 038053 105 KGGIHAVLVVFSVRSRFSQEEEA------AN----GGQPYTDEFLAELKRG----ATELRDQQ------A----EVDSLK 160 (231)
Q Consensus 105 ~~~~~~il~vvd~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~----~~~l~~~~------~----~i~~is 160 (231)
+..+|++++|+|.++..+..... .. ...|++ .++++.|.. ..++...+ . +++.+|
T Consensus 65 ~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~S 143 (160)
T cd04156 65 LENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVV-LLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCS 143 (160)
T ss_pred hccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEE-EEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecc
Confidence 46789999999998543222211 01 223333 344444421 11222111 1 466789
Q ss_pred hhhHhhHHHHHHHHH
Q 038053 161 EYSKQEISKLMGQMQ 175 (231)
Q Consensus 161 ~~~~~~i~~l~~~i~ 175 (231)
|++|+|+++++..+.
T Consensus 144 a~~~~gv~~~~~~i~ 158 (160)
T cd04156 144 AVTGEGLAEAFRKLA 158 (160)
T ss_pred cccCCChHHHHHHHh
Confidence 999999999988764
No 106
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.30 E-value=2e-12 Score=103.00 Aligned_cols=84 Identities=18% Similarity=0.114 Sum_probs=59.7
Q ss_pred CCCCCC----cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-EE------ee
Q 038053 2 SSGMGE----RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-TV------LK 70 (231)
Q Consensus 2 ~~~~~~----~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-~~------~~ 70 (231)
++.|++ +.++++++|++++| .+++|+|+||||||||+++|+|...+ ..|.+........ .. ..
T Consensus 7 ~~~~~~~~~~~~il~~~s~~i~~G--~~~~l~G~nGsGKSTLl~~i~Gl~~~----~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 7 SKTYGGGGEKVQALKGVSLSIEKG--EFVAIVGPSGSGKSTLLNILGGLDRP----TSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred EEEecCCCcceeEEeeeEEEEcCC--CEEEEEcCCCCCHHHHHHHHhCCcCC----CceeEEECCEehhhcchhHHHHHH
Confidence 556765 68999999999999 99999999999999999999999873 3443333221110 00 00
Q ss_pred CCcEEEEEeCCCCcCCCCCch
Q 038053 71 DGQVVNVIDTPGLFDSSAGSE 91 (231)
Q Consensus 71 ~~~~~~l~Dtpg~~~~~~~~~ 91 (231)
.....++++.|.+++..+..+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e 101 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALE 101 (218)
T ss_pred hhcEEEEeeccccCCCCcHHH
Confidence 235678889888887554433
No 107
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.30 E-value=2e-12 Score=102.58 Aligned_cols=86 Identities=21% Similarity=0.146 Sum_probs=60.7
Q ss_pred CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEEeeCCcEEEEEe
Q 038053 1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTVLKDGQVVNVID 79 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~D 79 (231)
+++.|++++++++++|++++| .+++|+|+||||||||+++|+|...+ ..|.++...... ..........++++
T Consensus 6 l~~~~~~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~p----~~G~i~~~g~~~~~~~~~~~~i~~v~q 79 (213)
T cd03259 6 LSKTYGSVRALDDLSLTVEPG--EFLALLGPSGCGKTTLLRLIAGLERP----DSGEILIDGRDVTGVPPERRNIGMVFQ 79 (213)
T ss_pred eEEEeCCeeeecceeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCC----CCeEEEECCEEcCcCchhhccEEEEcC
Confidence 356788888999999999999 99999999999999999999999873 344333322110 00001235677888
Q ss_pred CCCCcCCCCCchH
Q 038053 80 TPGLFDSSAGSEF 92 (231)
Q Consensus 80 tpg~~~~~~~~~~ 92 (231)
.|.+++..+..++
T Consensus 80 ~~~~~~~~tv~~~ 92 (213)
T cd03259 80 DYALFPHLTVAEN 92 (213)
T ss_pred chhhccCCcHHHH
Confidence 8887765544333
No 108
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.30 E-value=1.8e-11 Score=92.21 Aligned_cols=137 Identities=18% Similarity=0.212 Sum_probs=77.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
.+|+++|.+|||||||+|.+++..... ...+++.......... .+ ..+.++||||.... ..+.
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~---~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~--------~~l~--- 66 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVD---EYDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEY--------SAMR--- 66 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcC---CcCCcchheEEEEEEE-CCEEEEEEEEECCCCcch--------HHHH---
Confidence 579999999999999999999865311 1111111111111222 33 23567999996431 1121
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH--------h--cCCCCcHHHHHHHHHhhH--------HHHHhhcc-chhhhhhh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------A--NGGQPYTDEFLAELKRGA--------TELRDQQA-EVDSLKEY 162 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~--~~~~~~~~~~~~~~~~~~--------~~l~~~~~-~i~~is~~ 162 (231)
...+..++++++++++++.-+..+.. . ....|++ .+.++.|... ..+....+ +++.+|++
T Consensus 67 ~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~pii-vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 145 (162)
T cd04138 67 DQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMV-LVGNKCDLAARTVSSRQGQDLAKSYGIPYIETSAK 145 (162)
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECcccccceecHHHHHHHHHHhCCeEEEecCC
Confidence 22335679999999988432222211 1 1233443 3344433210 12222222 67789999
Q ss_pred hHhhHHHHHHHHHH
Q 038053 163 SKQEISKLMGQMQE 176 (231)
Q Consensus 163 ~~~~i~~l~~~i~~ 176 (231)
+|.|+++++..+.+
T Consensus 146 ~~~gi~~l~~~l~~ 159 (162)
T cd04138 146 TRQGVEEAFYTLVR 159 (162)
T ss_pred CCCCHHHHHHHHHH
Confidence 99999998887754
No 109
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.29 E-value=1.7e-11 Score=92.68 Aligned_cols=138 Identities=20% Similarity=0.186 Sum_probs=78.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
.+|+++|++|+|||||+|.+++..... ...+++.......... .+ ..+.++||||..... .+ .
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~~---~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~--------~~---~ 67 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFVT---DYDPTIEDSYTKQCEI-DGQWAILDILDTAGQEEFS--------AM---R 67 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCc---ccCCCccceEEEEEEE-CCEEEEEEEEECCCCcchh--------HH---H
Confidence 689999999999999999998865311 1112222111112222 33 356789999965421 11 1
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH----------hcCCCCcHHHHHHHHHhhH---------HHHHhhcc-chhhhhh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA----------ANGGQPYTDEFLAELKRGA---------TELRDQQA-EVDSLKE 161 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~---------~~l~~~~~-~i~~is~ 161 (231)
...+..+|++++|+|+++.-+..... .....|++ .+.++.|... ..+....+ +++.+|+
T Consensus 68 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-iv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 146 (164)
T cd04145 68 EQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMI-LVGNKADLEHQRKVSREEGQELARKLKIPYIETSA 146 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEE-EEeeCccccccceecHHHHHHHHHHcCCcEEEeeC
Confidence 22335679999999998533222211 11233433 3344443110 11211122 6778999
Q ss_pred hhHhhHHHHHHHHHHH
Q 038053 162 YSKQEISKLMGQMQES 177 (231)
Q Consensus 162 ~~~~~i~~l~~~i~~~ 177 (231)
.+|.|+.++++.+...
T Consensus 147 ~~~~~i~~l~~~l~~~ 162 (164)
T cd04145 147 KDRLNVDKAFHDLVRV 162 (164)
T ss_pred CCCCCHHHHHHHHHHh
Confidence 9999999998877653
No 110
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.29 E-value=1.5e-12 Score=102.24 Aligned_cols=92 Identities=21% Similarity=0.180 Sum_probs=69.5
Q ss_pred CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeee----ee--EEeeCCcE
Q 038053 1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEM----KT--TVLKDGQV 74 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~----~~--~~~~~~~~ 74 (231)
+++.||++.++++++|.+++| ...+++|++|+|||||+++|.|...+..| .+-..... .. ......+.
T Consensus 14 v~~~fG~~~Ild~v~l~V~~G--ei~~iiGgSGsGKStlLr~I~Gll~P~~G----eI~i~G~~i~~ls~~~~~~ir~r~ 87 (263)
T COG1127 14 VTKSFGDRVILDGVDLDVPRG--EILAILGGSGSGKSTLLRLILGLLRPDKG----EILIDGEDIPQLSEEELYEIRKRM 87 (263)
T ss_pred eeeecCCEEEecCceeeecCC--cEEEEECCCCcCHHHHHHHHhccCCCCCC----eEEEcCcchhccCHHHHHHHHhhe
Confidence 478999999999999999999 99999999999999999999999985443 32222111 00 00014567
Q ss_pred EEEEeCCCCcCCCCCchHHHHHHH
Q 038053 75 VNVIDTPGLFDSSAGSEFVGKEIV 98 (231)
Q Consensus 75 ~~l~Dtpg~~~~~~~~~~~~~~~~ 98 (231)
++++|...+|+..++.+++...+.
T Consensus 88 GvlFQ~gALFssltV~eNVafplr 111 (263)
T COG1127 88 GVLFQQGALFSSLTVFENVAFPLR 111 (263)
T ss_pred eEEeeccccccccchhHhhheehH
Confidence 889999999988888777655433
No 111
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.29 E-value=2.8e-12 Score=101.87 Aligned_cols=82 Identities=15% Similarity=0.145 Sum_probs=58.8
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCC
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTP 81 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtp 81 (231)
++.|+++.++++++|++.+| .+++|+|+||+|||||+++|+|...+ ..|.++................++.+.|
T Consensus 18 ~~~~~~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~----~~G~i~~~g~~i~~~~~~~~i~~~~q~~ 91 (214)
T PRK13543 18 AFSRNEEPVFGPLDFHVDAG--EALLVQGDNGAGKTTLLRVLAGLLHV----ESGQIQIDGKTATRGDRSRFMAYLGHLP 91 (214)
T ss_pred EEecCCceeeecceEEECCC--CEEEEEcCCCCCHHHHHHHHhCCCCC----CCeeEEECCEEccchhhhhceEEeecCc
Confidence 56788888999999999999 99999999999999999999999873 4444433321110001123356788888
Q ss_pred CCcCCCCC
Q 038053 82 GLFDSSAG 89 (231)
Q Consensus 82 g~~~~~~~ 89 (231)
.+++..+.
T Consensus 92 ~~~~~~t~ 99 (214)
T PRK13543 92 GLKADLST 99 (214)
T ss_pred ccccCCcH
Confidence 87765443
No 112
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.29 E-value=4.4e-12 Score=96.76 Aligned_cols=85 Identities=20% Similarity=0.103 Sum_probs=66.0
Q ss_pred CCCCCCcc--cCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEe
Q 038053 2 SSGMGERV--IDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVID 79 (231)
Q Consensus 2 ~~~~~~~~--~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~D 79 (231)
+-.|.+++ +++++|+++.+| ..++++|++|||||||+|.+.|-.. ++.|.++..... .+-+......+++
T Consensus 10 sl~y~g~~~~~le~vsL~ia~g--e~vv~lGpSGcGKTTLLnl~AGf~~----P~~G~i~l~~r~--i~gPgaergvVFQ 81 (259)
T COG4525 10 SLSYEGKPRSALEDVSLTIASG--ELVVVLGPSGCGKTTLLNLIAGFVT----PSRGSIQLNGRR--IEGPGAERGVVFQ 81 (259)
T ss_pred EEecCCcchhhhhccceeecCC--CEEEEEcCCCccHHHHHHHHhcCcC----cccceEEECCEe--ccCCCccceeEec
Confidence 44677777 999999999999 9999999999999999999999988 455555543221 1112456788999
Q ss_pred CCCCcCCCCCchHHH
Q 038053 80 TPGLFDSSAGSEFVG 94 (231)
Q Consensus 80 tpg~~~~~~~~~~~~ 94 (231)
.+++.++.+..+++.
T Consensus 82 ~~~LlPWl~~~dNva 96 (259)
T COG4525 82 NEALLPWLNVIDNVA 96 (259)
T ss_pred cCccchhhHHHHHHH
Confidence 999999887665543
No 113
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.29 E-value=8.4e-12 Score=97.66 Aligned_cols=85 Identities=15% Similarity=0.092 Sum_probs=59.5
Q ss_pred CCCCCC------cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCC--ccccccCCCCcceeeeeeeEEeeCCc
Q 038053 2 SSGMGE------RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRK--AFKASADSSGVTKTCEMKTTVLKDGQ 73 (231)
Q Consensus 2 ~~~~~~------~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~--~~~~~~~~~~~t~~~~~~~~~~~~~~ 73 (231)
+++|+. .++++++++++.+| .+++|+|+||+|||||+++|+|.. . +..|.+..+............
T Consensus 10 s~~~~~~~~~~~~~~l~~~~~~i~~G--e~~~l~G~nGsGKStLl~~i~Gl~~~~----~~~G~i~~~g~~~~~~~~~~~ 83 (194)
T cd03213 10 TVTVKSSPSKSGKQLLKNVSGKAKPG--ELTAIMGPSGAGKSTLLNALAGRRTGL----GVSGEVLINGRPLDKRSFRKI 83 (194)
T ss_pred EEEEecCCCcccccceecceEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCC----CCceEEEECCEeCchHhhhhe
Confidence 455654 67999999999999 999999999999999999999997 6 334433332211100011345
Q ss_pred EEEEEeCCCCcCCCCCchH
Q 038053 74 VVNVIDTPGLFDSSAGSEF 92 (231)
Q Consensus 74 ~~~l~Dtpg~~~~~~~~~~ 92 (231)
..++++.|.+++..+..++
T Consensus 84 i~~~~q~~~~~~~~t~~~~ 102 (194)
T cd03213 84 IGYVPQDDILHPTLTVRET 102 (194)
T ss_pred EEEccCcccCCCCCcHHHH
Confidence 6778888887775555443
No 114
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.29 E-value=1.4e-11 Score=93.08 Aligned_cols=138 Identities=15% Similarity=0.149 Sum_probs=80.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRIG 102 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~ 102 (231)
+|+++|++|||||||++.+++...... ..+..+.......... .+ ..+.++|+||... +.....
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~-----------~~~~~~ 67 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSEQ--YKSTIGVDFKTKTIEV-DGKRVKLQIWDTAGQER-----------FRSITS 67 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCC--CCCceeeEEEEEEEEE-CCEEEEEEEEECCChHH-----------HHHHHH
Confidence 799999999999999999998764211 1222222222222222 33 3567999999532 111222
Q ss_pred hhcCCccEEEEEEECCCCCCHHHHH--------hc-CCCCcHHHHHHHHHhhH---------HHHHhhcc-chhhhhhhh
Q 038053 103 LAKGGIHAVLVVFSVRSRFSQEEEA--------AN-GGQPYTDEFLAELKRGA---------TELRDQQA-EVDSLKEYS 163 (231)
Q Consensus 103 ~~~~~~~~il~vvd~~~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~~---------~~l~~~~~-~i~~is~~~ 163 (231)
..+..+|++++++|+++..+..+.. .. ...|++ .+.++.+... ..+....+ +++.+|+.+
T Consensus 68 ~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~piv-vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 146 (164)
T smart00175 68 SYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIM-LVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKT 146 (164)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEE-EEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCC
Confidence 3346789999999998544433321 11 223333 3334433110 12222222 677789999
Q ss_pred HhhHHHHHHHHHHH
Q 038053 164 KQEISKLMGQMQES 177 (231)
Q Consensus 164 ~~~i~~l~~~i~~~ 177 (231)
+.|+++++..+.+.
T Consensus 147 ~~~i~~l~~~i~~~ 160 (164)
T smart00175 147 NTNVEEAFEELARE 160 (164)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999998888764
No 115
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.29 E-value=2.5e-12 Score=107.47 Aligned_cols=87 Identities=24% Similarity=0.204 Sum_probs=62.6
Q ss_pred CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee--EEeeCCcEEEEE
Q 038053 1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT--TVLKDGQVVNVI 78 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~l~ 78 (231)
+++.|++..++++++|++++| .+++|+|+||||||||+++|+|...+ ..|.+........ .........+++
T Consensus 10 l~~~~~~~~~l~~vsl~i~~G--e~~~l~G~NGaGKSTLl~~l~Gl~~p----~~G~i~~~g~~~~~~~~~~~~~i~~v~ 83 (303)
T TIGR01288 10 VSKSYGDKVVVNDLSFTIARG--ECFGLLGPNGAGKSTIARMLLGMISP----DRGKITVLGEPVPSRARLARVAIGVVP 83 (303)
T ss_pred EEEEeCCeEEEcceeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCC----CceEEEECCEECcccHHHHhhcEEEEe
Confidence 357788888999999999999 99999999999999999999999873 3343332221100 000134577889
Q ss_pred eCCCCcCCCCCchHH
Q 038053 79 DTPGLFDSSAGSEFV 93 (231)
Q Consensus 79 Dtpg~~~~~~~~~~~ 93 (231)
+.|.+++..+..+.+
T Consensus 84 q~~~~~~~~tv~e~l 98 (303)
T TIGR01288 84 QFDNLDPEFTVRENL 98 (303)
T ss_pred ccccCCcCCcHHHHH
Confidence 988888765554443
No 116
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.28 E-value=3.3e-12 Score=104.11 Aligned_cols=83 Identities=20% Similarity=0.178 Sum_probs=59.8
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCC
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTP 81 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtp 81 (231)
++.|++..++++++|++++| .+++|+|+||||||||+++|+|...+ ..|.++....... .. .....++++.|
T Consensus 8 ~~~~~~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p----~~G~i~~~g~~~~-~~-~~~~~~v~q~~ 79 (255)
T PRK11248 8 YADYGGKPALEDINLTLESG--ELLVVLGPSGCGKTTLLNLIAGFVPY----QHGSITLDGKPVE-GP-GAERGVVFQNE 79 (255)
T ss_pred EEEeCCeeeEeeeeEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CCcEEEECCEECC-CC-CCcEEEEeCCC
Confidence 56787788999999999999 99999999999999999999999873 3443333221100 01 23457788888
Q ss_pred CCcCCCCCchH
Q 038053 82 GLFDSSAGSEF 92 (231)
Q Consensus 82 g~~~~~~~~~~ 92 (231)
.+++..+..++
T Consensus 80 ~~~~~~tv~e~ 90 (255)
T PRK11248 80 GLLPWRNVQDN 90 (255)
T ss_pred ccCCCCcHHHH
Confidence 87765554443
No 117
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.28 E-value=2.2e-12 Score=102.84 Aligned_cols=82 Identities=16% Similarity=0.040 Sum_probs=58.7
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee---EEeeCCcEEEEE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT---TVLKDGQVVNVI 78 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~l~ 78 (231)
++.|+++.++++++|++.+| .+++|+|+||||||||+++|+|...+ ..|.++....... ... .....+++
T Consensus 7 ~~~~~~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~----~~G~i~~~g~~~~~~~~~~-~~~i~~~~ 79 (220)
T cd03265 7 VKKYGDFEAVRGVSFRVRRG--EIFGLLGPNGAGKTTTIKMLTTLLKP----TSGRATVAGHDVVREPREV-RRRIGIVF 79 (220)
T ss_pred EEEECCEEeeeceeEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CceEEEECCEecCcChHHH-hhcEEEec
Confidence 56788888999999999999 99999999999999999999999763 3333332211100 011 23467788
Q ss_pred eCCCCcCCCCCc
Q 038053 79 DTPGLFDSSAGS 90 (231)
Q Consensus 79 Dtpg~~~~~~~~ 90 (231)
+.|.+++..+..
T Consensus 80 q~~~~~~~~tv~ 91 (220)
T cd03265 80 QDLSVDDELTGW 91 (220)
T ss_pred CCccccccCcHH
Confidence 888777654443
No 118
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.28 E-value=2.1e-11 Score=91.82 Aligned_cols=134 Identities=14% Similarity=0.114 Sum_probs=79.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhh
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLA 104 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~ 104 (231)
+|+++|.+|||||||++.+++...... ..|.......... ....+.++|+||.... .......
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~-----------~~~~~~~ 63 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTT-----IPTIGFNVETVEY-KNVSFTVWDVGGQDKI-----------RPLWKHY 63 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCC-----CCCcCcceEEEEE-CCEEEEEEECCCChhh-----------HHHHHHH
Confidence 489999999999999999999863211 1122122222333 5678899999996541 1112233
Q ss_pred cCCccEEEEEEECCCCCCHHHHH----------hcCCCCcHHHHHHHHHhhH----HHHHhhc---------cchhhhhh
Q 038053 105 KGGIHAVLVVFSVRSRFSQEEEA----------ANGGQPYTDEFLAELKRGA----TELRDQQ---------AEVDSLKE 161 (231)
Q Consensus 105 ~~~~~~il~vvd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~----~~l~~~~---------~~i~~is~ 161 (231)
+..+|++++|+|+++.-+..... .....|++ .+.++.+... +++...+ .++..+|+
T Consensus 64 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~pii-iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 142 (158)
T cd00878 64 YENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLL-IFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSA 142 (158)
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEE-EEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeC
Confidence 46779999999998432111111 11233443 3345544211 1121111 15778999
Q ss_pred hhHhhHHHHHHHHHH
Q 038053 162 YSKQEISKLMGQMQE 176 (231)
Q Consensus 162 ~~~~~i~~l~~~i~~ 176 (231)
++|.|+++++..+..
T Consensus 143 ~~~~gv~~~~~~l~~ 157 (158)
T cd00878 143 VTGDGLDEGLDWLLQ 157 (158)
T ss_pred CCCCCHHHHHHHHhh
Confidence 999999998877653
No 119
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.28 E-value=2e-11 Score=93.17 Aligned_cols=140 Identities=11% Similarity=0.062 Sum_probs=78.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEee-CCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG 102 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~ 102 (231)
.+|+++|.+|+|||||+|.+++....... .+..+.+......... ....+.+.||||... +.....
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~~~~~ 71 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVH--DLTIGVEFGARMITIDGKQIKLQIWDTAGQES-----------FRSITR 71 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCccceeEEEEEEEECCEEEEEEEEECCCcHH-----------HHHHHH
Confidence 68999999999999999999987642211 1111121111112221 124677999999432 122223
Q ss_pred hhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhh------HHHHHhh---cc-chhhhhhhh
Q 038053 103 LAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRG------ATELRDQ---QA-EVDSLKEYS 163 (231)
Q Consensus 103 ~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~------~~~l~~~---~~-~i~~is~~~ 163 (231)
..+..+|++++++|+++.-+..+.. .....|.+ .+.++.+.. ....... .+ +++.+|+.+
T Consensus 72 ~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvi-vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 150 (168)
T cd01866 72 SYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIM-LIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKT 150 (168)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEE-EEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCC
Confidence 3446789999999998533322221 01122332 233333311 0111111 11 567789999
Q ss_pred HhhHHHHHHHHHHH
Q 038053 164 KQEISKLMGQMQES 177 (231)
Q Consensus 164 ~~~i~~l~~~i~~~ 177 (231)
+.|+.+++..+.+.
T Consensus 151 ~~~i~~~~~~~~~~ 164 (168)
T cd01866 151 ASNVEEAFINTAKE 164 (168)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999988776553
No 120
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.28 E-value=3.3e-12 Score=101.79 Aligned_cols=85 Identities=18% Similarity=0.092 Sum_probs=60.1
Q ss_pred CCCCCC--cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE--EeeCCcEEEE
Q 038053 2 SSGMGE--RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT--VLKDGQVVNV 77 (231)
Q Consensus 2 ~~~~~~--~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~l 77 (231)
++.|++ ++++++++|++.+| ..++|+|+||||||||+++|+|...+ ..|.+......... ........++
T Consensus 7 ~~~~~~~~~~il~~is~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~----~~G~i~~~g~~~~~~~~~~~~~i~~v 80 (220)
T cd03263 7 TKTYKKGTKPAVDDLSLNVYKG--EIFGLLGHNGAGKTTTLKMLTGELRP----TSGTAYINGYSIRTDRKAARQSLGYC 80 (220)
T ss_pred EEEeCCCCceeecceEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCC----CCcEEEECCEecccchHHHhhhEEEe
Confidence 567776 78999999999999 99999999999999999999999873 33433322111000 0012346788
Q ss_pred EeCCCCcCCCCCchH
Q 038053 78 IDTPGLFDSSAGSEF 92 (231)
Q Consensus 78 ~Dtpg~~~~~~~~~~ 92 (231)
++.|.+++..+..++
T Consensus 81 ~q~~~~~~~~tv~~~ 95 (220)
T cd03263 81 PQFDALFDELTVREH 95 (220)
T ss_pred cCcCCccccCCHHHH
Confidence 888888865554433
No 121
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.28 E-value=2.9e-12 Score=103.44 Aligned_cols=84 Identities=25% Similarity=0.216 Sum_probs=59.9
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEEeeCCcEEEEEeC
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTVLKDGQVVNVIDT 80 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~Dt 80 (231)
++.|+++.+++++++++.+| .+++|+|+||||||||+++|+|...+ ..|.+....... ..........++++.
T Consensus 9 ~~~~~~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~----~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 82 (239)
T cd03296 9 SKRFGDFVALDDVSLDIPSG--ELVALLGPSGSGKTTLLRLIAGLERP----DSGTILFGGEDATDVPVQERNVGFVFQH 82 (239)
T ss_pred EEEECCEEeeeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CceEEEECCEECCcCCccccceEEEecC
Confidence 56788888999999999999 99999999999999999999999863 333333222110 000112456788888
Q ss_pred CCCcCCCCCch
Q 038053 81 PGLFDSSAGSE 91 (231)
Q Consensus 81 pg~~~~~~~~~ 91 (231)
|.+++..+..+
T Consensus 83 ~~~~~~~tv~e 93 (239)
T cd03296 83 YALFRHMTVFD 93 (239)
T ss_pred CcccCCCCHHH
Confidence 88876544433
No 122
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.27 E-value=1.8e-11 Score=94.96 Aligned_cols=135 Identities=10% Similarity=0.097 Sum_probs=80.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
.+|+++|.+|||||||+|.+++...... ..|.......... .+..+.++|+||.... ......
T Consensus 18 ~~i~ivG~~~~GKTsli~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~~~D~~G~~~~-----------~~~~~~ 80 (184)
T smart00178 18 AKILFLGLDNAGKTTLLHMLKNDRLAQH-----QPTQHPTSEELAI-GNIKFTTFDLGGHQQA-----------RRLWKD 80 (184)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCccc-----CCccccceEEEEE-CCEEEEEEECCCCHHH-----------HHHHHH
Confidence 7999999999999999999998754211 1122222222223 5677889999996531 111223
Q ss_pred hcCCccEEEEEEECCCC--CCHHHHH----h----cCCCCcHHHHHHHHHhh----HHHHHhhc--------------c-
Q 038053 104 AKGGIHAVLVVFSVRSR--FSQEEEA----A----NGGQPYTDEFLAELKRG----ATELRDQQ--------------A- 154 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~--~~~~~~~----~----~~~~~~~~~~~~~~~~~----~~~l~~~~--------------~- 154 (231)
.+..+|++++|+|+++. +...... . ....|++ .+.++.|.. .+++.+.+ +
T Consensus 81 ~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~pil-iv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~ 159 (184)
T smart00178 81 YFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFL-ILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRP 159 (184)
T ss_pred HhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEE-EEEeCccccCCCCHHHHHHHcCCCcccccccccCCce
Confidence 45788999999999843 1111111 1 1223333 334444421 12333222 1
Q ss_pred -chhhhhhhhHhhHHHHHHHHHH
Q 038053 155 -EVDSLKEYSKQEISKLMGQMQE 176 (231)
Q Consensus 155 -~i~~is~~~~~~i~~l~~~i~~ 176 (231)
.++.+|+++|.|++++++-+.+
T Consensus 160 ~~i~~~Sa~~~~g~~~~~~wl~~ 182 (184)
T smart00178 160 LEVFMCSVVRRMGYGEGFKWLSQ 182 (184)
T ss_pred eEEEEeecccCCChHHHHHHHHh
Confidence 4777899999999998877654
No 123
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.27 E-value=3e-11 Score=94.82 Aligned_cols=148 Identities=17% Similarity=0.107 Sum_probs=84.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRIG 102 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~ 102 (231)
+|+++|.+|||||||++.+++...... ..+.++.......... .+ ..+.++||||..... .....+......
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~~--~~pt~~~~~~~~~i~~-~~~~~~l~i~Dt~G~~~~~---~~~~~e~~~~~~ 75 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPEE--YIPTEHRRLYRPAVVL-SGRVYDLHILDVPNMQRYP---GTAGQEWMDPRF 75 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCcc--cCCccccccceeEEEE-CCEEEEEEEEeCCCcccCC---ccchhHHHHHHH
Confidence 689999999999999999998653211 1222221111112222 34 356789999975421 112222222223
Q ss_pred hhcCCccEEEEEEECCCCCCHHHHH--------h----cCCCCcHHHHHHHHHhhH------HHHHh----hc-cchhhh
Q 038053 103 LAKGGIHAVLVVFSVRSRFSQEEEA--------A----NGGQPYTDEFLAELKRGA------TELRD----QQ-AEVDSL 159 (231)
Q Consensus 103 ~~~~~~~~il~vvd~~~~~~~~~~~--------~----~~~~~~~~~~~~~~~~~~------~~l~~----~~-~~i~~i 159 (231)
..+..+|++++|+|+++..+-.... . ....|++ .+.++.|... ..+.. .. .+++.+
T Consensus 76 ~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~pii-ivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~ 154 (198)
T cd04142 76 RGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIV-VVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLEC 154 (198)
T ss_pred hhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEE-EEEECccccccccccHHHHHHHHHHhcCCcEEEe
Confidence 3457899999999998543333221 1 1233443 3344443200 11211 11 256788
Q ss_pred hhhhHhhHHHHHHHHHHHHH
Q 038053 160 KEYSKQEISKLMGQMQESYE 179 (231)
Q Consensus 160 s~~~~~~i~~l~~~i~~~~~ 179 (231)
|+++|.|+++++..+....-
T Consensus 155 Sak~g~~v~~lf~~i~~~~~ 174 (198)
T cd04142 155 SAKYNWHILLLFKELLISAT 174 (198)
T ss_pred cCCCCCCHHHHHHHHHHHhh
Confidence 99999999999988876543
No 124
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.27 E-value=3e-12 Score=104.41 Aligned_cols=83 Identities=16% Similarity=0.136 Sum_probs=60.4
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCC
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTP 81 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtp 81 (231)
++.|+++.+|++++|++.+| .+++|+|+||||||||+++|+|...+ ..|.++...... ... .....++++.|
T Consensus 19 ~~~~~~~~il~~isl~i~~G--e~~~I~G~NGsGKSTLlk~l~Gl~~p----~~G~i~~~g~~~-~~~-~~~i~~v~q~~ 90 (257)
T PRK11247 19 SKRYGERTVLNQLDLHIPAG--QFVAVVGRSGCGKSTLLRLLAGLETP----SAGELLAGTAPL-AEA-REDTRLMFQDA 90 (257)
T ss_pred EEEECCcceeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCC----CCeEEEECCEEH-HHh-hCceEEEecCc
Confidence 56788888999999999999 99999999999999999999999873 334333211110 011 34567888888
Q ss_pred CCcCCCCCchH
Q 038053 82 GLFDSSAGSEF 92 (231)
Q Consensus 82 g~~~~~~~~~~ 92 (231)
.+++..+..++
T Consensus 91 ~l~~~~tv~en 101 (257)
T PRK11247 91 RLLPWKKVIDN 101 (257)
T ss_pred cCCCCCcHHHH
Confidence 88765554443
No 125
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.27 E-value=1.4e-12 Score=102.21 Aligned_cols=87 Identities=17% Similarity=0.097 Sum_probs=63.5
Q ss_pred CCCCC-CCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeee-eeeE-----EeeCCc
Q 038053 1 MSSGM-GERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCE-MKTT-----VLKDGQ 73 (231)
Q Consensus 1 ~~~~~-~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~-~~~~-----~~~~~~ 73 (231)
+++.| +++.++++|+|.+++| ..|+|||++|||||||+++|.|...+ +.|.+..... .... ......
T Consensus 9 l~k~yp~~~~aL~~Vnl~I~~G--E~VaiIG~SGaGKSTLLR~lngl~d~----t~G~i~~~g~~i~~~~~k~lr~~r~~ 82 (258)
T COG3638 9 LSKTYPGGHQALKDVNLEINQG--EMVAIIGPSGAGKSTLLRSLNGLVDP----TSGEILFNGVQITKLKGKELRKLRRD 82 (258)
T ss_pred eeeecCCCceeeeeEeEEeCCC--cEEEEECCCCCcHHHHHHHHhcccCC----CcceEEecccchhccchHHHHHHHHh
Confidence 46788 9999999999999999 99999999999999999999997763 3332222110 0000 001356
Q ss_pred EEEEEeCCCCcCCCCCchHH
Q 038053 74 VVNVIDTPGLFDSSAGSEFV 93 (231)
Q Consensus 74 ~~~l~Dtpg~~~~~~~~~~~ 93 (231)
.+++++.|++.+..++.+++
T Consensus 83 iGmIfQ~~nLv~r~sv~~NV 102 (258)
T COG3638 83 IGMIFQQFNLVPRLSVLENV 102 (258)
T ss_pred ceeEeccCCcccccHHHHHH
Confidence 78999999998866554443
No 126
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.27 E-value=2.1e-11 Score=92.34 Aligned_cols=139 Identities=14% Similarity=0.118 Sum_probs=79.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEe-eCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
+|+++|++|||||||+|.+++...... ..+....+........ .....+.++||||... +......
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~~~~ 68 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSK--YLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE-----------YLEVRNE 68 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCC--CCCccceeEEEEEEEECCeEEEEEEEECCccHH-----------HHHHHHH
Confidence 699999999999999999999864211 1111111111111221 1234677999999643 1112223
Q ss_pred hcCCccEEEEEEECCCCCCHHHHH---------hc-----CCCCcHHHHHHHHHhh------H---HHHHhhc-cchhhh
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEEEA---------AN-----GGQPYTDEFLAELKRG------A---TELRDQQ-AEVDSL 159 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~~~---------~~-----~~~~~~~~~~~~~~~~------~---~~l~~~~-~~i~~i 159 (231)
.+..+|++++|+|+++.-+..... .. ...|++ .+.++.|.. . ..+.... .+++.+
T Consensus 69 ~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (168)
T cd04119 69 FYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVV-VCANKIDLTKHRAVSEDEGRLWAESKGFKYFET 147 (168)
T ss_pred HhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEE-EEEEchhcccccccCHHHHHHHHHHcCCeEEEE
Confidence 346789999999998542222111 11 122333 333443321 0 1121112 267789
Q ss_pred hhhhHhhHHHHHHHHHHH
Q 038053 160 KEYSKQEISKLMGQMQES 177 (231)
Q Consensus 160 s~~~~~~i~~l~~~i~~~ 177 (231)
|++++.|+.+++..+...
T Consensus 148 Sa~~~~gi~~l~~~l~~~ 165 (168)
T cd04119 148 SACTGEGVNEMFQTLFSS 165 (168)
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 999999999998887653
No 127
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.27 E-value=2.6e-11 Score=92.20 Aligned_cols=140 Identities=12% Similarity=0.075 Sum_probs=79.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEee-CCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG 102 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~ 102 (231)
.+|+++|.+|||||||+|.+++...... ..+.............. ....+.+.||||... +.....
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~-----------~~~~~~ 68 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSA--FVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQER-----------YRTITT 68 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCceeeEEEEEEEEECCEEEEEEEEECCChHH-----------HHHHHH
Confidence 5899999999999999999998764211 11111111111112110 124577899999543 111123
Q ss_pred hhcCCccEEEEEEECCCCCCHHHHH--------hc-CCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhhhh
Q 038053 103 LAKGGIHAVLVVFSVRSRFSQEEEA--------AN-GGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKEYS 163 (231)
Q Consensus 103 ~~~~~~~~il~vvd~~~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~~~ 163 (231)
..+..+|++++|+|.++.-+..... .. ...|++ .+.++.|.. ...+...++ +++.+|+++
T Consensus 69 ~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 147 (165)
T cd01865 69 AYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVI-LVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKE 147 (165)
T ss_pred HHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEE-EEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCC
Confidence 3457889999999997432222111 11 122222 333443310 012333333 677899999
Q ss_pred HhhHHHHHHHHHHH
Q 038053 164 KQEISKLMGQMQES 177 (231)
Q Consensus 164 ~~~i~~l~~~i~~~ 177 (231)
+.|+.++++.+...
T Consensus 148 ~~gv~~l~~~l~~~ 161 (165)
T cd01865 148 NINVKQVFERLVDI 161 (165)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999888664
No 128
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.27 E-value=2.4e-12 Score=102.12 Aligned_cols=84 Identities=21% Similarity=0.120 Sum_probs=59.9
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE-----EeeCCcEEE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT-----VLKDGQVVN 76 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~-----~~~~~~~~~ 76 (231)
++.|++..++++++|++.+| .+++|+|+||||||||+++|+|...+ ..|.++........ ........+
T Consensus 7 ~~~~~~~~~l~~~s~~i~~G--~~~~l~G~nGsGKSTLl~~l~G~~~~----~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 80 (213)
T cd03262 7 HKSFGDFHVLKGIDLTVKKG--EVVVIIGPSGSGKSTLLRCINLLEEP----DSGTIIIDGLKLTDDKKNINELRQKVGM 80 (213)
T ss_pred EEEECCeEeecCceEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CCceEEECCEECCccchhHHHHHhcceE
Confidence 56777788999999999999 99999999999999999999999873 34433332211100 001245678
Q ss_pred EEeCCCCcCCCCCch
Q 038053 77 VIDTPGLFDSSAGSE 91 (231)
Q Consensus 77 l~Dtpg~~~~~~~~~ 91 (231)
+++.|.+++..+..+
T Consensus 81 ~~q~~~~~~~~t~~e 95 (213)
T cd03262 81 VFQQFNLFPHLTVLE 95 (213)
T ss_pred EecccccCCCCcHHH
Confidence 888888776544433
No 129
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.27 E-value=4.3e-12 Score=102.00 Aligned_cols=85 Identities=21% Similarity=0.150 Sum_probs=60.3
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE----EeeCCcEEEE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT----VLKDGQVVNV 77 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~l 77 (231)
++.|+++.++++++|++.+| .+++|+|+||||||||+++|+|...+ ..|.+......... ........++
T Consensus 7 ~~~~~~~~~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p----~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (232)
T cd03218 7 SKRYGKRKVVNGVSLSVKQG--EIVGLLGPNGAGKTTTFYMIVGLVKP----DSGKILLDGQDITKLPMHKRARLGIGYL 80 (232)
T ss_pred EEEeCCEEeeccceeEecCC--cEEEEECCCCCCHHHHHHHHhCCCCC----CCcEEEECCEecccCCHhHHHhccEEEe
Confidence 56788888999999999999 99999999999999999999999873 33433332211000 0002346778
Q ss_pred EeCCCCcCCCCCchH
Q 038053 78 IDTPGLFDSSAGSEF 92 (231)
Q Consensus 78 ~Dtpg~~~~~~~~~~ 92 (231)
++.|.+++..+..++
T Consensus 81 ~q~~~~~~~~tv~~~ 95 (232)
T cd03218 81 PQEASIFRKLTVEEN 95 (232)
T ss_pred cCCccccccCcHHHH
Confidence 888888775554433
No 130
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.27 E-value=3e-12 Score=106.89 Aligned_cols=85 Identities=13% Similarity=-0.011 Sum_probs=61.5
Q ss_pred CCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE--EeeCCcEEEEEeC
Q 038053 3 SGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT--VLKDGQVVNVIDT 80 (231)
Q Consensus 3 ~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~l~Dt 80 (231)
+.|+++.++++++|++++| .+++|+|+||||||||+++|+|...+ ..|.+......... ........++++.
T Consensus 1 k~y~~~~~l~~vs~~i~~G--e~~~l~G~NGaGKSTLl~~l~Gl~~p----~~G~i~~~g~~~~~~~~~~~~~i~~~~q~ 74 (302)
T TIGR01188 1 KVYGDFKAVDGVNFKVREG--EVFGFLGPNGAGKTTTIRMLTTLLRP----TSGTARVAGYDVVREPRKVRRSIGIVPQY 74 (302)
T ss_pred CeeCCeeEEeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCC----CceEEEECCEEcccCHHHHHhhcEEecCC
Confidence 4688889999999999999 99999999999999999999999873 34433332211000 0002346788999
Q ss_pred CCCcCCCCCchHH
Q 038053 81 PGLFDSSAGSEFV 93 (231)
Q Consensus 81 pg~~~~~~~~~~~ 93 (231)
+.+++..+..+.+
T Consensus 75 ~~~~~~~tv~e~l 87 (302)
T TIGR01188 75 ASVDEDLTGRENL 87 (302)
T ss_pred CCCCCCCcHHHHH
Confidence 9888766654443
No 131
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.27 E-value=4.9e-12 Score=101.73 Aligned_cols=86 Identities=20% Similarity=0.144 Sum_probs=61.2
Q ss_pred CCCCCCCc----ccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEE------ee
Q 038053 1 MSSGMGER----VIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTV------LK 70 (231)
Q Consensus 1 ~~~~~~~~----~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~------~~ 70 (231)
++++|+++ +++++++|++.+| .+++|+|+||||||||+++|+|...+ ..|.+.......... ..
T Consensus 7 l~~~~~~~~~~~~il~~~s~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~----~~G~i~~~g~~~~~~~~~~~~~~ 80 (233)
T cd03258 7 VSKVFGDTGGKVTALKDVSLSVPKG--EIFGIIGRSGAGKSTLIRCINGLERP----TSGSVLVDGTDLTLLSGKELRKA 80 (233)
T ss_pred ceEEccCCCCceeeeecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CCceEEECCEEcccCCHHHHHHH
Confidence 35677766 8999999999999 99999999999999999999999873 344343322211000 00
Q ss_pred CCcEEEEEeCCCCcCCCCCchH
Q 038053 71 DGQVVNVIDTPGLFDSSAGSEF 92 (231)
Q Consensus 71 ~~~~~~l~Dtpg~~~~~~~~~~ 92 (231)
.....++++.|.+++..+..++
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~e~ 102 (233)
T cd03258 81 RRRIGMIFQHFNLLSSRTVFEN 102 (233)
T ss_pred HhheEEEccCcccCCCCcHHHH
Confidence 2346788899988875554443
No 132
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.27 E-value=1.8e-11 Score=92.34 Aligned_cols=133 Identities=14% Similarity=0.101 Sum_probs=78.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhh
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLA 104 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~ 104 (231)
+|+++|++|+|||||++.++...... ..+ |.......... .+..+.++||||... +.......
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~---~~~--t~~~~~~~~~~-~~~~~~i~Dt~G~~~-----------~~~~~~~~ 63 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT---TIP--TIGFNVETVTY-KNLKFQVWDLGGQTS-----------IRPYWRCY 63 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC---cCC--ccCcCeEEEEE-CCEEEEEEECCCCHH-----------HHHHHHHH
Confidence 48999999999999999997655321 111 22112222223 567788999999753 11112234
Q ss_pred cCCccEEEEEEECCCCCCHH--HHH----hc----CCCCcHHHHHHHHHhh----HHHHHhhc---------cchhhhhh
Q 038053 105 KGGIHAVLVVFSVRSRFSQE--EEA----AN----GGQPYTDEFLAELKRG----ATELRDQQ---------AEVDSLKE 161 (231)
Q Consensus 105 ~~~~~~il~vvd~~~~~~~~--~~~----~~----~~~~~~~~~~~~~~~~----~~~l~~~~---------~~i~~is~ 161 (231)
+..+|++++|+|+++.-+.. ... .. ...|++ .+++++|.. ...+...+ .+++++|+
T Consensus 64 ~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii-iv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa 142 (158)
T cd04151 64 YSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLL-VFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSA 142 (158)
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEE-EEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeec
Confidence 46789999999998432111 111 11 133443 445555421 01222111 14788999
Q ss_pred hhHhhHHHHHHHHH
Q 038053 162 YSKQEISKLMGQMQ 175 (231)
Q Consensus 162 ~~~~~i~~l~~~i~ 175 (231)
++|.|+++++..+.
T Consensus 143 ~~~~gi~~l~~~l~ 156 (158)
T cd04151 143 IKGEGLDEGMDWLV 156 (158)
T ss_pred cCCCCHHHHHHHHh
Confidence 99999999987764
No 133
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.27 E-value=3.9e-12 Score=101.00 Aligned_cols=85 Identities=18% Similarity=0.082 Sum_probs=59.4
Q ss_pred CCCC-CCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-EE-----eeCCcE
Q 038053 2 SSGM-GERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-TV-----LKDGQV 74 (231)
Q Consensus 2 ~~~~-~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-~~-----~~~~~~ 74 (231)
++.| ++..++++++|++.+| .+++|+|+||||||||+++|+|...+ ..|.++....... .. ......
T Consensus 8 ~~~~~~~~~il~~is~~i~~G--~~~~l~G~nGsGKSTLl~~i~Gl~~~----~~G~i~~~g~~~~~~~~~~~~~~~~~i 81 (214)
T TIGR02673 8 SKAYPGGVAALHDVSLHIRKG--EFLFLTGPSGAGKTTLLKLLYGALTP----SRGQVRIAGEDVNRLRGRQLPLLRRRI 81 (214)
T ss_pred eEEeCCCceeecceeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CCceEEECCEEcccCCHHHHHHHHhhe
Confidence 5567 4678999999999999 99999999999999999999999763 3443333221100 00 002356
Q ss_pred EEEEeCCCCcCCCCCchH
Q 038053 75 VNVIDTPGLFDSSAGSEF 92 (231)
Q Consensus 75 ~~l~Dtpg~~~~~~~~~~ 92 (231)
.++++.|.+++..+..++
T Consensus 82 ~~~~q~~~~~~~~tv~~~ 99 (214)
T TIGR02673 82 GVVFQDFRLLPDRTVYEN 99 (214)
T ss_pred EEEecChhhccCCcHHHH
Confidence 788888888765544333
No 134
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.26 E-value=4.7e-12 Score=107.77 Aligned_cols=85 Identities=15% Similarity=0.072 Sum_probs=64.9
Q ss_pred CCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEe-------eCCcEE
Q 038053 3 SGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVL-------KDGQVV 75 (231)
Q Consensus 3 ~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-------~~~~~~ 75 (231)
|+|+++.++++++|++++| ..++|+|+||||||||+++|+|...+ ..|.+........... ......
T Consensus 1 ~~~~~~~~l~~vs~~i~~G--ei~~l~G~sGsGKSTLLr~L~Gl~~p----~~G~I~i~G~~i~~~~~~~~~~~rr~~i~ 74 (363)
T TIGR01186 1 KKTGGKKGVNDADLAIAKG--EIFVIMGLSGSGKSTTVRMLNRLIEP----TAGQIFIDGENIMKQSPVELREVRRKKIG 74 (363)
T ss_pred CccCCceeEEeeEEEEcCC--CEEEEECCCCChHHHHHHHHhCCCCC----CceEEEECCEECCcCCHHHHHHHHhCcEE
Confidence 6789999999999999999 99999999999999999999999884 4443333222111000 024678
Q ss_pred EEEeCCCCcCCCCCchHH
Q 038053 76 NVIDTPGLFDSSAGSEFV 93 (231)
Q Consensus 76 ~l~Dtpg~~~~~~~~~~~ 93 (231)
++++.+++++..++.+++
T Consensus 75 ~v~Q~~~l~~~~TV~eNi 92 (363)
T TIGR01186 75 MVFQQFALFPHMTILQNT 92 (363)
T ss_pred EEECCCcCCCCCCHHHHH
Confidence 899999999887776654
No 135
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.26 E-value=3.4e-12 Score=102.43 Aligned_cols=84 Identities=18% Similarity=0.162 Sum_probs=60.5
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-E---EeeCCcEEEE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-T---VLKDGQVVNV 77 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-~---~~~~~~~~~l 77 (231)
++.|++++++++++|++.+| .+++|+|+||||||||+++|+|...+ ..|.++....... . ........++
T Consensus 7 ~~~~~~~~~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~----~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (230)
T TIGR03410 7 NVYYGQSHILRGVSLEVPKG--EVTCVLGRNGVGKTTLLKTLMGLLPV----KSGSIRLDGEDITKLPPHERARAGIAYV 80 (230)
T ss_pred EEEeCCeEEecceeeEECCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CCCEEEECCEECCCCCHHHHHHhCeEEe
Confidence 56788888999999999999 99999999999999999999999873 4444443221100 0 0002346788
Q ss_pred EeCCCCcCCCCCch
Q 038053 78 IDTPGLFDSSAGSE 91 (231)
Q Consensus 78 ~Dtpg~~~~~~~~~ 91 (231)
++.+.+++..+..+
T Consensus 81 ~q~~~~~~~~tv~~ 94 (230)
T TIGR03410 81 PQGREIFPRLTVEE 94 (230)
T ss_pred ccCCcccCCCcHHH
Confidence 89888887544433
No 136
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.26 E-value=2.3e-10 Score=86.33 Aligned_cols=144 Identities=16% Similarity=0.266 Sum_probs=78.7
Q ss_pred EEEEcCCCCCHHHHHHHHhCCC-ccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHH---HHHHH
Q 038053 26 VVLLGRTGNGKSATGNSILGRK-AFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKE---IVKRI 101 (231)
Q Consensus 26 i~lvG~~g~GKSTLin~l~g~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~---~~~~~ 101 (231)
|+++|.+|||||||+|.|++.. .... ....+.|..... .. ....+.++||||+...... ...... ....+
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~-~~~~~~t~~~~~--~~--~~~~~~~~D~~g~~~~~~~-~~~~~~~~~~~~~~ 75 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLART-SKTPGKTQLINF--FN--VNDKFRLVDLPGYGYAKVS-KEVKEKWGKLIEEY 75 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeee-cCCCCcceeEEE--EE--ccCeEEEecCCCccccccC-HHHHHHHHHHHHHH
Confidence 7999999999999999999432 2111 123334433222 11 2337889999998653221 111111 12222
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHh------h--HHHHHh------hccchhhhhhh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKR------G--ATELRD------QQAEVDSLKEY 162 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~------~--~~~l~~------~~~~i~~is~~ 162 (231)
.......+.+++++|........+.. .....|.+ .++++.+. . ...+.. ...++.++|++
T Consensus 76 ~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi-~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~ 154 (170)
T cd01876 76 LENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFL-VVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSL 154 (170)
T ss_pred HHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEE-EEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecC
Confidence 23335678899999987554444322 11122222 12222221 0 011211 12267788999
Q ss_pred hHhhHHHHHHHHHH
Q 038053 163 SKQEISKLMGQMQE 176 (231)
Q Consensus 163 ~~~~i~~l~~~i~~ 176 (231)
++.++.+++..+.+
T Consensus 155 ~~~~~~~l~~~l~~ 168 (170)
T cd01876 155 KGQGIDELRALIEK 168 (170)
T ss_pred CCCCHHHHHHHHHH
Confidence 99999998887765
No 137
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.26 E-value=4.5e-12 Score=100.89 Aligned_cols=85 Identities=20% Similarity=0.123 Sum_probs=60.4
Q ss_pred CCCCCCc----ccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE--EeeCCcEE
Q 038053 2 SSGMGER----VIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT--VLKDGQVV 75 (231)
Q Consensus 2 ~~~~~~~----~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~ 75 (231)
++.|++. ++++++++++++| .+++|+|+||||||||+++|+|...+ ..|.+......... ........
T Consensus 8 ~~~~~~~~~~~~il~~~sl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~----~~G~i~~~g~~~~~~~~~~~~~i~ 81 (218)
T cd03266 8 TKRFRDVKKTVQAVDGVSFTVKPG--EVTGLLGPNGAGKTTTLRMLAGLLEP----DAGFATVDGFDVVKEPAEARRRLG 81 (218)
T ss_pred EEecCCCCccceeecceEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCcCC----CCceEEECCEEcccCHHHHHhhEE
Confidence 5677765 7999999999999 99999999999999999999999873 34433332211100 01134577
Q ss_pred EEEeCCCCcCCCCCchH
Q 038053 76 NVIDTPGLFDSSAGSEF 92 (231)
Q Consensus 76 ~l~Dtpg~~~~~~~~~~ 92 (231)
++++.|.+++..+..++
T Consensus 82 ~~~q~~~~~~~~tv~e~ 98 (218)
T cd03266 82 FVSDSTGLYDRLTAREN 98 (218)
T ss_pred EecCCcccCcCCCHHHH
Confidence 88898888775554433
No 138
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.26 E-value=6.1e-12 Score=103.37 Aligned_cols=85 Identities=19% Similarity=0.111 Sum_probs=61.3
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE----E---eeCCcE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT----V---LKDGQV 74 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~----~---~~~~~~ 74 (231)
++.|++..++++++|++++| .+++|+|+||||||||+++|+|...+ ..|.+......... . ......
T Consensus 31 ~~~~~~~~il~~is~~i~~G--e~~~l~G~nGsGKSTLl~~L~Gl~~p----~~G~i~i~g~~~~~~~~~~~~~~~~~~i 104 (269)
T cd03294 31 LKKTGQTVGVNDVSLDVREG--EIFVIMGLSGSGKSTLLRCINRLIEP----TSGKVLIDGQDIAAMSRKELRELRRKKI 104 (269)
T ss_pred hhhcCCceEeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCC----CCeEEEECCEEccccChhhhhhhhcCcE
Confidence 56788888999999999999 99999999999999999999999873 33433332211100 0 002356
Q ss_pred EEEEeCCCCcCCCCCchH
Q 038053 75 VNVIDTPGLFDSSAGSEF 92 (231)
Q Consensus 75 ~~l~Dtpg~~~~~~~~~~ 92 (231)
.++++.|.+++..+..++
T Consensus 105 ~~v~q~~~~~~~~tv~e~ 122 (269)
T cd03294 105 SMVFQSFALLPHRTVLEN 122 (269)
T ss_pred EEEecCcccCCCCcHHHH
Confidence 788998888875555444
No 139
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.26 E-value=2.3e-11 Score=92.21 Aligned_cols=138 Identities=14% Similarity=0.130 Sum_probs=79.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
.+|+++|++|||||||+|.+++...... ..+..+.+........ .+ ..+.++|+||... +....
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~-----------~~~~~ 69 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLD--SKSTIGVEFATRSIQI-DGKTIKAQIWDTAGQER-----------YRAIT 69 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCccceEEEEEEEEE-CCEEEEEEEEeCCChHH-----------HHHHH
Confidence 5899999999999999999998764211 2233332222222222 23 3567999999542 11111
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH--------hc-CCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhhh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------AN-GGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKEY 162 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~~ 162 (231)
...+..++++++|+|+++..+..+.. .. ...|++ .+.++.|.. ...+....+ +++.+|+.
T Consensus 70 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~-vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 148 (165)
T cd01868 70 SAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIM-LVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSAL 148 (165)
T ss_pred HHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEE-EEEECccccccccCCHHHHHHHHHHcCCEEEEEECC
Confidence 22346789999999998533333221 11 123332 233443310 012221112 57778999
Q ss_pred hHhhHHHHHHHHHH
Q 038053 163 SKQEISKLMGQMQE 176 (231)
Q Consensus 163 ~~~~i~~l~~~i~~ 176 (231)
+|.|+..++..+..
T Consensus 149 ~~~~v~~l~~~l~~ 162 (165)
T cd01868 149 DGTNVEEAFKQLLT 162 (165)
T ss_pred CCCCHHHHHHHHHH
Confidence 99999999888765
No 140
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.26 E-value=5.9e-11 Score=89.59 Aligned_cols=138 Identities=13% Similarity=0.125 Sum_probs=76.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEee-CCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
+|+++|++|||||||+|.+++...... ..+..+........... ....+.++||||.... ......
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-----------~~~~~~ 68 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPD--LAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERF-----------RTLTSS 68 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcc--cCCcccceEEEEEEEECCEEEEEEEEECCCchhh-----------hhhhHH
Confidence 799999999999999999998764221 12222211111112221 2245778999995431 111122
Q ss_pred hcCCccEEEEEEECCCCCCHHHHH----------hcCCCCcHHHHHHHHHhh--------HHHHHhhcc-chhhhhhhhH
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEEEA----------ANGGQPYTDEFLAELKRG--------ATELRDQQA-EVDSLKEYSK 164 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~--------~~~l~~~~~-~i~~is~~~~ 164 (231)
.+..+|++++++|+++.-+..... .....|.+ .+.++.+.. ...+....+ +++.+|+.+|
T Consensus 69 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~-iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 147 (161)
T cd01863 69 YYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKM-LVGNKIDKENREVTREEGLKFARKHNMLFIETSAKTR 147 (161)
T ss_pred HhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEE-EEEECCcccccccCHHHHHHHHHHcCCEEEEEecCCC
Confidence 346789999999998433322211 11122222 222333211 011111122 6788899999
Q ss_pred hhHHHHHHHHHH
Q 038053 165 QEISKLMGQMQE 176 (231)
Q Consensus 165 ~~i~~l~~~i~~ 176 (231)
.|+.+++..+..
T Consensus 148 ~gi~~~~~~~~~ 159 (161)
T cd01863 148 DGVQQAFEELVE 159 (161)
T ss_pred CCHHHHHHHHHH
Confidence 999999887654
No 141
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.26 E-value=2.4e-11 Score=91.76 Aligned_cols=138 Identities=12% Similarity=0.105 Sum_probs=77.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEee-CCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
+|+++|++|+|||||++.+++...... ..+..+........... ....+.+.|+||... +......
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~-----------~~~~~~~ 68 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKED--SQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQER-----------FRSVTRS 68 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCC--CCCceeeeEEEEEEEECCEEEEEEEEECcchHH-----------HHHhHHH
Confidence 699999999999999999998764211 11111111111112221 124567999999643 1111223
Q ss_pred hcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhhH---------HHHHhhc-cchhhhhhhhH
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRGA---------TELRDQQ-AEVDSLKEYSK 164 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~---------~~l~~~~-~~i~~is~~~~ 164 (231)
.+..+|++++++|+++..+..... .....|.+ .+.++.|... ..+.... -+++.+|++++
T Consensus 69 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ii-vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 147 (161)
T cd04113 69 YYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVI-LVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTG 147 (161)
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEE-EEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCC
Confidence 346789999999998543322211 11223332 2333333110 1111111 26777899999
Q ss_pred hhHHHHHHHHHH
Q 038053 165 QEISKLMGQMQE 176 (231)
Q Consensus 165 ~~i~~l~~~i~~ 176 (231)
.|+.+++..+..
T Consensus 148 ~~i~~~~~~~~~ 159 (161)
T cd04113 148 ENVEEAFLKCAR 159 (161)
T ss_pred CCHHHHHHHHHH
Confidence 999998887754
No 142
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.26 E-value=4.3e-12 Score=100.65 Aligned_cols=84 Identities=21% Similarity=0.196 Sum_probs=59.1
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEEeeCCcEEEEEeC
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTVLKDGQVVNVIDT 80 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~Dt 80 (231)
++.|++++++++++|++.+| .+++|+|+||||||||+++|+|...+ ..|.+....... ..........++++.
T Consensus 7 ~~~~~~~~~l~~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~----~~G~v~~~g~~~~~~~~~~~~i~~~~q~ 80 (213)
T cd03301 7 TKRFGNVTALDDLNLDIADG--EFVVLLGPSGCGKTTTLRMIAGLEEP----TSGRIYIGGRDVTDLPPKDRDIAMVFQN 80 (213)
T ss_pred EEEECCeeeeeceEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCC----CceEEEECCEECCcCCcccceEEEEecC
Confidence 56778888999999999999 99999999999999999999999763 333333222110 000002346778888
Q ss_pred CCCcCCCCCch
Q 038053 81 PGLFDSSAGSE 91 (231)
Q Consensus 81 pg~~~~~~~~~ 91 (231)
+.+++..+..+
T Consensus 81 ~~~~~~~tv~~ 91 (213)
T cd03301 81 YALYPHMTVYD 91 (213)
T ss_pred hhhccCCCHHH
Confidence 88776444433
No 143
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.26 E-value=4.9e-11 Score=90.83 Aligned_cols=140 Identities=14% Similarity=0.096 Sum_probs=79.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
.+|+++|++|+|||||++.+++...... ..+............. .+ ..+.+.||||.... ....
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~~f~~~--~~~t~~~~~~~~~~~~-~~~~~~l~l~D~~g~~~~-----------~~~~ 69 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDSFNPS--FISTIGIDFKIRTIEL-DGKKIKLQIWDTAGQERF-----------RTIT 69 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCcCCcc--cccCccceEEEEEEEE-CCEEEEEEEEeCCchHHH-----------HHHH
Confidence 6899999999999999999998753211 1111111111122222 22 35678999995421 1111
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH--------h-cCCCCcHHHHHHHHHh---------hHHHHHhhc-cchhhhhhh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------A-NGGQPYTDEFLAELKR---------GATELRDQQ-AEVDSLKEY 162 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~---------~~~~l~~~~-~~i~~is~~ 162 (231)
...+..+|++++++|+++..+-.... . ....|++ .+.++.|. ....+.... .+++.+|+.
T Consensus 70 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i-iv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 148 (167)
T cd01867 70 TAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERM-LVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAK 148 (167)
T ss_pred HHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEE-EEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCC
Confidence 23346889999999997543322221 1 1122322 22222221 001122222 267889999
Q ss_pred hHhhHHHHHHHHHHHH
Q 038053 163 SKQEISKLMGQMQESY 178 (231)
Q Consensus 163 ~~~~i~~l~~~i~~~~ 178 (231)
++.|+.+++..+.+.+
T Consensus 149 ~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 149 ANINVEEAFFTLAKDI 164 (167)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999988877643
No 144
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.26 E-value=1.6e-11 Score=91.72 Aligned_cols=135 Identities=16% Similarity=0.159 Sum_probs=77.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee--EEe-eCCcEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT--TVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~--~~~-~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
+|+++|++|+|||||+|.+++...... ...|....... ... .....+.++|+||... +....
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-----------~~~~~ 66 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDEN----YKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQER-----------FRSIT 66 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCc----cCCceeeeeEEEEEEECCEEEEEEEEecCChHH-----------HHHHH
Confidence 699999999999999999998876322 11122111211 111 0235677899999643 11123
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH--------hc-CCCCcHHHHHHHHHhh-H-----HH---HHhh-ccchhhhhhh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------AN-GGQPYTDEFLAELKRG-A-----TE---LRDQ-QAEVDSLKEY 162 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~-~-----~~---l~~~-~~~i~~is~~ 162 (231)
...+..+|++++++|+++.-+..... .. ...|+. .++++.+.. . .. +... ..+++.+|+.
T Consensus 67 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 145 (159)
T cd00154 67 PSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPII-LVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAK 145 (159)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEE-EEEEcccccccccccHHHHHHHHHHcCCeEEEEecC
Confidence 33446789999999998421111111 11 123333 333443321 0 11 2211 1267778999
Q ss_pred hHhhHHHHHHHHH
Q 038053 163 SKQEISKLMGQMQ 175 (231)
Q Consensus 163 ~~~~i~~l~~~i~ 175 (231)
++.|+++++..+.
T Consensus 146 ~~~~i~~~~~~i~ 158 (159)
T cd00154 146 TGENVEELFQSLA 158 (159)
T ss_pred CCCCHHHHHHHHh
Confidence 9999998887653
No 145
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.26 E-value=1.6e-10 Score=86.09 Aligned_cols=143 Identities=24% Similarity=0.220 Sum_probs=85.7
Q ss_pred EEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhhcCC
Q 038053 28 LLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGG 107 (231)
Q Consensus 28 lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (231)
++|++|+|||||+|.|++......+ ...+.|...............+.++||||+............ ........
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~----~~~~~~~~ 75 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVS-PVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREE----LARRVLER 75 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccC-CCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHH----HHHHHHHh
Confidence 5899999999999999998664332 233444443333333322668899999998865433222111 22233467
Q ss_pred ccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhhH----HHH-------Hhh--ccchhhhhhhhHhhHHH
Q 038053 108 IHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRGA----TEL-------RDQ--QAEVDSLKEYSKQEISK 169 (231)
Q Consensus 108 ~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~----~~l-------~~~--~~~i~~is~~~~~~i~~ 169 (231)
+|.+++++++.......... .....|.+ .++++.+... ... ... ..+++.+|+.++.|+..
T Consensus 76 ~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~i-vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~ 154 (163)
T cd00880 76 ADLILFVVDADLRADEEEEKLLELLRERGKPVL-LVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDE 154 (163)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEE-EEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHH
Confidence 89999999998665555542 22233332 3344433111 010 111 12677789999999998
Q ss_pred HHHHHHH
Q 038053 170 LMGQMQE 176 (231)
Q Consensus 170 l~~~i~~ 176 (231)
++..+..
T Consensus 155 l~~~l~~ 161 (163)
T cd00880 155 LREALIE 161 (163)
T ss_pred HHHHHHh
Confidence 8887765
No 146
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.26 E-value=2.6e-11 Score=92.05 Aligned_cols=138 Identities=14% Similarity=0.129 Sum_probs=79.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
.+|+++|++|+|||||++.+.+...... ..+....+........ .+ ..+.++||||... +....
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~-----------~~~~~ 69 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSGTFSER--QGNTIGVDFTMKTLEI-EGKRVKLQIWDTAGQER-----------FRTIT 69 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCCccc--CCCccceEEEEEEEEE-CCEEEEEEEEECCChHH-----------HHHHH
Confidence 6899999999999999999987543111 1111112222222333 33 3677999999432 11222
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH--------h-cCCCCcHHHHHHHHHhh---------HHHHHhhcc--chhhhhh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------A-NGGQPYTDEFLAELKRG---------ATELRDQQA--EVDSLKE 161 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~---------~~~l~~~~~--~i~~is~ 161 (231)
...+..+|++++++|+++..+..... . ....|++ .+.+++|.. ...+..... .++.+|+
T Consensus 70 ~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i-vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa 148 (165)
T cd01864 70 QSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLL-LIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSA 148 (165)
T ss_pred HHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEE-EEEECcccccccccCHHHHHHHHHHcCCcEEEEEEC
Confidence 33446789999999998543322211 1 1122332 334444311 012322222 5677899
Q ss_pred hhHhhHHHHHHHHHH
Q 038053 162 YSKQEISKLMGQMQE 176 (231)
Q Consensus 162 ~~~~~i~~l~~~i~~ 176 (231)
.+|.|+.+++..+.+
T Consensus 149 ~~~~~v~~~~~~l~~ 163 (165)
T cd01864 149 KESQNVEEAFLLMAT 163 (165)
T ss_pred CCCCCHHHHHHHHHH
Confidence 999999998887764
No 147
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.25 E-value=4.7e-12 Score=99.60 Aligned_cols=83 Identities=12% Similarity=0.054 Sum_probs=58.8
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee--EEeeCCcEEEEEe
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT--TVLKDGQVVNVID 79 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~l~D 79 (231)
++.|+++.+++++++++++| .+++|+|+||+|||||+++|+|...+ ..|.+........ .........++.+
T Consensus 7 ~~~~~~~~~l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~----~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (201)
T cd03231 7 TCERDGRALFSGLSFTLAAG--EALQVTGPNGSGKTTLLRILAGLSPP----LAGRVLLNGGPLDFQRDSIARGLLYLGH 80 (201)
T ss_pred EEEeCCceeeccceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CCcEEEECCEecccccHHhhhheEEecc
Confidence 56788888999999999999 99999999999999999999999873 3333332211100 0011345667788
Q ss_pred CCCCcCCCCCc
Q 038053 80 TPGLFDSSAGS 90 (231)
Q Consensus 80 tpg~~~~~~~~ 90 (231)
.+++++..+..
T Consensus 81 ~~~~~~~~tv~ 91 (201)
T cd03231 81 APGIKTTLSVL 91 (201)
T ss_pred ccccCCCcCHH
Confidence 88776654433
No 148
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.25 E-value=2.9e-12 Score=106.94 Aligned_cols=87 Identities=21% Similarity=0.154 Sum_probs=63.9
Q ss_pred CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE--EeeCCcEEEEE
Q 038053 1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT--VLKDGQVVNVI 78 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~l~ 78 (231)
+++.|++..++++++|++++| .+++|+|+||||||||+++|+|...+ +.|.+......... .......++++
T Consensus 8 l~~~~~~~~~l~~is~~i~~G--ei~~l~G~NGaGKTTLl~~l~Gl~~~----~~G~i~i~g~~~~~~~~~~~~~ig~~~ 81 (301)
T TIGR03522 8 LTKLYGTQNALDEVSFEAQKG--RIVGFLGPNGAGKSTTMKIITGYLPP----DSGSVQVCGEDVLQNPKEVQRNIGYLP 81 (301)
T ss_pred EEEEECCEEEEEEeEEEEeCC--eEEEEECCCCCCHHHHHHHHhCCCCC----CceEEEECCEEcccChHHHHhceEEec
Confidence 367788889999999999999 99999999999999999999999873 44434332211100 00134578899
Q ss_pred eCCCCcCCCCCchHH
Q 038053 79 DTPGLFDSSAGSEFV 93 (231)
Q Consensus 79 Dtpg~~~~~~~~~~~ 93 (231)
+.|.+++..+..+.+
T Consensus 82 q~~~l~~~~tv~e~l 96 (301)
T TIGR03522 82 EHNPLYLDMYVREYL 96 (301)
T ss_pred CCCCCCCCCcHHHHH
Confidence 999988766555443
No 149
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.25 E-value=3e-12 Score=108.73 Aligned_cols=88 Identities=20% Similarity=0.257 Sum_probs=66.2
Q ss_pred CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-EEeeCCcEEEEEe
Q 038053 1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-TVLKDGQVVNVID 79 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~D 79 (231)
+++.|++..+++++++++.+| .+++|+|+||||||||+++|+|...+ +.|.+..+..... .........+++|
T Consensus 12 l~~~~~~~~~l~~isl~i~~G--e~~~llGpsGsGKSTLLr~IaGl~~p----~~G~I~~~g~~i~~~~~~~r~ig~vfQ 85 (351)
T PRK11432 12 ITKRFGSNTVIDNLNLTIKQG--TMVTLLGPSGCGKTTVLRLVAGLEKP----TEGQIFIDGEDVTHRSIQQRDICMVFQ 85 (351)
T ss_pred EEEEECCeEEEeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHHCCCCC----CceEEEECCEECCCCCHHHCCEEEEeC
Confidence 356788888999999999999 99999999999999999999999984 4443333221110 0111356788999
Q ss_pred CCCCcCCCCCchHHH
Q 038053 80 TPGLFDSSAGSEFVG 94 (231)
Q Consensus 80 tpg~~~~~~~~~~~~ 94 (231)
.+.++++.++.+++.
T Consensus 86 ~~~lfp~~tv~eNi~ 100 (351)
T PRK11432 86 SYALFPHMSLGENVG 100 (351)
T ss_pred CcccCCCCCHHHHHH
Confidence 999999877766553
No 150
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.25 E-value=5.3e-12 Score=101.68 Aligned_cols=85 Identities=22% Similarity=0.121 Sum_probs=60.0
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE----EeeCCcEEEE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT----VLKDGQVVNV 77 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~l 77 (231)
++.|++..+++++++++.+| .+++|+|+||||||||+++|+|...+ ..|.+......... ........++
T Consensus 7 ~~~~~~~~~l~~vsl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~----~~G~i~~~g~~~~~~~~~~~~~~~i~~v 80 (236)
T cd03219 7 TKRFGGLVALDDVSFSVRPG--EIHGLIGPNGAGKTTLFNLISGFLRP----TSGSVLFDGEDITGLPPHEIARLGIGRT 80 (236)
T ss_pred EEEECCEEEecCceEEecCC--cEEEEECCCCCCHHHHHHHHcCCCCC----CCceEEECCEECCCCCHHHHHhcCEEEE
Confidence 55677778999999999999 99999999999999999999999763 33333322211000 0002346778
Q ss_pred EeCCCCcCCCCCchH
Q 038053 78 IDTPGLFDSSAGSEF 92 (231)
Q Consensus 78 ~Dtpg~~~~~~~~~~ 92 (231)
++.|.+++..+..+.
T Consensus 81 ~q~~~l~~~~tv~~~ 95 (236)
T cd03219 81 FQIPRLFPELTVLEN 95 (236)
T ss_pred ecccccccCCCHHHH
Confidence 899888876554433
No 151
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.25 E-value=5.6e-12 Score=102.29 Aligned_cols=87 Identities=22% Similarity=0.212 Sum_probs=67.5
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeee----eeeEEeeCCcEEEE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCE----MKTTVLKDGQVVNV 77 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~----~~~~~~~~~~~~~l 77 (231)
++.|+...+++++++.|++| ..++|.|+||||||||+++|.|...+..| .+..... .........+.+++
T Consensus 9 ~~~~~~~~a~~di~l~i~~G--e~vaLlGpSGaGKsTlLRiIAGLe~p~~G----~I~~~~~~l~D~~~~~~~~R~VGfv 82 (345)
T COG1118 9 KKRFGAFGALDDISLDIKSG--ELVALLGPSGAGKSTLLRIIAGLETPDAG----RIRLNGRVLFDVSNLAVRDRKVGFV 82 (345)
T ss_pred hhhcccccccccceeeecCC--cEEEEECCCCCcHHHHHHHHhCcCCCCCc----eEEECCEeccchhccchhhcceeEE
Confidence 67889999999999999999 99999999999999999999999985443 3332221 11112224678899
Q ss_pred EeCCCCcCCCCCchHHH
Q 038053 78 IDTPGLFDSSAGSEFVG 94 (231)
Q Consensus 78 ~Dtpg~~~~~~~~~~~~ 94 (231)
++..-+++++++.+++.
T Consensus 83 FQ~YALF~HmtVa~NIA 99 (345)
T COG1118 83 FQHYALFPHMTVADNIA 99 (345)
T ss_pred EechhhcccchHHhhhh
Confidence 99999999888776654
No 152
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.25 E-value=3.8e-11 Score=91.48 Aligned_cols=139 Identities=14% Similarity=0.141 Sum_probs=78.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRIG 102 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~ 102 (231)
+|+++|++|||||||+|++++...... ..+....+........ .+ ..+.++|+||... +.....
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~-----------~~~~~~ 67 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQ--YKATIGADFLTKEVTV-DDKLVTLQIWDTAGQER-----------FQSLGV 67 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcC--cCCccceEEEEEEEEE-CCEEEEEEEEeCCChHH-----------HHhHHH
Confidence 799999999999999999998764211 1111121111112222 33 3456899999543 111122
Q ss_pred hhcCCccEEEEEEECCCCCCHHHHH--------h-----cCCCCcHHHHHHHHHhh------H---HHHHhhc--cchhh
Q 038053 103 LAKGGIHAVLVVFSVRSRFSQEEEA--------A-----NGGQPYTDEFLAELKRG------A---TELRDQQ--AEVDS 158 (231)
Q Consensus 103 ~~~~~~~~il~vvd~~~~~~~~~~~--------~-----~~~~~~~~~~~~~~~~~------~---~~l~~~~--~~i~~ 158 (231)
..+..+|++++++|+.+.-+..... . ....|++ .+.++.|.. . ..+.+.. .+++.
T Consensus 68 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (172)
T cd01862 68 AFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFV-VLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFE 146 (172)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEE-EEEECcccccccccCHHHHHHHHHHcCCceEEE
Confidence 3347789999999997543322111 0 0123333 233333311 0 1222222 26777
Q ss_pred hhhhhHhhHHHHHHHHHHHH
Q 038053 159 LKEYSKQEISKLMGQMQESY 178 (231)
Q Consensus 159 is~~~~~~i~~l~~~i~~~~ 178 (231)
+|+.+|.|++.++..+....
T Consensus 147 ~Sa~~~~gv~~l~~~i~~~~ 166 (172)
T cd01862 147 TSAKEAINVEQAFETIARKA 166 (172)
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 89999999999988877653
No 153
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.25 E-value=5.6e-12 Score=102.03 Aligned_cols=83 Identities=12% Similarity=0.023 Sum_probs=58.7
Q ss_pred CCCCCC-CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eE-----EeeCCc
Q 038053 1 MSSGMG-ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TT-----VLKDGQ 73 (231)
Q Consensus 1 ~~~~~~-~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~-----~~~~~~ 73 (231)
+++.|+ +..++++++|++.+| .+++|+|+||||||||+++|+|...+ ..|.+....... .. ......
T Consensus 7 l~~~~~~~~~il~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~----~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 7 LSKVYPNGKQALKNINLNINPG--EFVAIIGPSGAGKSTLLRCINRLVEP----SSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred eeeecCCCcceeecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCcCC----CccEEEECCEEhhhCCHHHHHHHHhh
Confidence 356777 778999999999999 99999999999999999999999863 333333222110 00 000234
Q ss_pred EEEEEeCCCCcCCCCC
Q 038053 74 VVNVIDTPGLFDSSAG 89 (231)
Q Consensus 74 ~~~l~Dtpg~~~~~~~ 89 (231)
..++++.|.+++..+.
T Consensus 81 i~~v~q~~~~~~~~tv 96 (243)
T TIGR02315 81 IGMIFQHYNLIERLTV 96 (243)
T ss_pred eEEEcCCCcccccccH
Confidence 6778888887764443
No 154
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.25 E-value=3.6e-12 Score=102.97 Aligned_cols=85 Identities=18% Similarity=0.064 Sum_probs=59.9
Q ss_pred CCCCCC-cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eE-----EeeCCcE
Q 038053 2 SSGMGE-RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TT-----VLKDGQV 74 (231)
Q Consensus 2 ~~~~~~-~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~-----~~~~~~~ 74 (231)
++.|++ +.++++++|++.+| .+++|+|+||||||||+++|+|...+ ..|.+....... .. .......
T Consensus 7 ~~~~~~~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~----~~G~i~~~g~~~~~~~~~~~~~~~~~i 80 (241)
T cd03256 7 SKTYPNGKKALKDVSLSINPG--EFVALIGPSGAGKSTLLRCLNGLVEP----TSGSVLIDGTDINKLKGKALRQLRRQI 80 (241)
T ss_pred EEecCCccEEEecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCcCC----CCceEEECCEeccccCHhHHHHHHhcc
Confidence 567776 78999999999999 99999999999999999999999863 334333322110 00 0002346
Q ss_pred EEEEeCCCCcCCCCCchH
Q 038053 75 VNVIDTPGLFDSSAGSEF 92 (231)
Q Consensus 75 ~~l~Dtpg~~~~~~~~~~ 92 (231)
.++++.+.+++..+..++
T Consensus 81 ~~~~q~~~~~~~~tv~~~ 98 (241)
T cd03256 81 GMIFQQFNLIERLSVLEN 98 (241)
T ss_pred EEEcccCcccccCcHHHH
Confidence 778888887765544433
No 155
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.25 E-value=2.9e-11 Score=92.41 Aligned_cols=134 Identities=14% Similarity=0.092 Sum_probs=78.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
.+|+++|.+|||||||++.+........ .+ |.......... ....+.+.||||... +......
T Consensus 10 ~kv~i~G~~~~GKTsli~~l~~~~~~~~---~~--t~g~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~~~~~ 72 (168)
T cd04149 10 MRILMLGLDAAGKTTILYKLKLGQSVTT---IP--TVGFNVETVTY-KNVKFNVWDVGGQDK-----------IRPLWRH 72 (168)
T ss_pred cEEEEECcCCCCHHHHHHHHccCCCccc---cC--CcccceEEEEE-CCEEEEEEECCCCHH-----------HHHHHHH
Confidence 6899999999999999999986543211 11 11111222222 567789999999753 1111223
Q ss_pred hcCCccEEEEEEECCCCCCHHHHH------h----cCCCCcHHHHHHHHHhh----HHHHHhhc-----c----chhhhh
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEEEA------A----NGGQPYTDEFLAELKRG----ATELRDQQ-----A----EVDSLK 160 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~~~------~----~~~~~~~~~~~~~~~~~----~~~l~~~~-----~----~i~~is 160 (231)
.+..+|++++|+|+++..+..... . ....|++ .+.++.|.. .+++...+ . .+..+|
T Consensus 73 ~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~pii-lv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S 151 (168)
T cd04149 73 YYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLL-VFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSC 151 (168)
T ss_pred HhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEE-EEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEee
Confidence 456789999999998542222111 1 1123333 344554311 12332221 1 456789
Q ss_pred hhhHhhHHHHHHHHH
Q 038053 161 EYSKQEISKLMGQMQ 175 (231)
Q Consensus 161 ~~~~~~i~~l~~~i~ 175 (231)
|++|.|+.+++..+.
T Consensus 152 Ak~g~gv~~~~~~l~ 166 (168)
T cd04149 152 ATSGDGLYEGLTWLS 166 (168)
T ss_pred CCCCCChHHHHHHHh
Confidence 999999999887664
No 156
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.24 E-value=3.3e-11 Score=109.08 Aligned_cols=142 Identities=19% Similarity=0.240 Sum_probs=90.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccc-cCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKAS-ADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
+|+++|..++|||||+++|+|....... ....+.|.+..........+..+.++||||.. .+...+..
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe-----------~fi~~m~~ 70 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHE-----------KFLSNMLA 70 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHH-----------HHHHHHHH
Confidence 6999999999999999999986421110 12346676554444433345678899999953 23333334
Q ss_pred hcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhhH--------HHHHhhc-------cchhhhhhhh
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRGA--------TELRDQQ-------AEVDSLKEYS 163 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~--------~~l~~~~-------~~i~~is~~~ 163 (231)
....+|.+++|+|+..++...... ...+.+..+.++|++|... .++.+.+ .+++++|+.+
T Consensus 71 g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~t 150 (614)
T PRK10512 71 GVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATE 150 (614)
T ss_pred HhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCC
Confidence 457789999999998777666544 2222333223444443210 2233222 2678899999
Q ss_pred HhhHHHHHHHHHHH
Q 038053 164 KQEISKLMGQMQES 177 (231)
Q Consensus 164 ~~~i~~l~~~i~~~ 177 (231)
|.|++.|++.+...
T Consensus 151 G~gI~~L~~~L~~~ 164 (614)
T PRK10512 151 GRGIDALREHLLQL 164 (614)
T ss_pred CCCCHHHHHHHHHh
Confidence 99999998887653
No 157
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.24 E-value=7.5e-11 Score=101.50 Aligned_cols=89 Identities=19% Similarity=0.165 Sum_probs=63.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEe-----------------------eCCcEEEEEeC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVL-----------------------KDGQVVNVIDT 80 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-----------------------~~~~~~~l~Dt 80 (231)
..|+|||.||+|||||||+|++..... ...+++|.++..+.... .....+.++|+
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~--~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~ 79 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEI--ANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDV 79 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccc--cCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEc
Confidence 579999999999999999999986532 24566676666544321 01234679999
Q ss_pred CCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECC
Q 038053 81 PGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVR 118 (231)
Q Consensus 81 pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~ 118 (231)
||+..+......++..++..+ ..+|++++|+|+.
T Consensus 80 aGl~~ga~~g~glg~~fL~~i----r~ad~ll~Vvd~~ 113 (396)
T PRK09602 80 AGLVPGAHEGRGLGNQFLDDL----RQADALIHVVDAS 113 (396)
T ss_pred CCcCCCccchhhHHHHHHHHH----HHCCEEEEEEeCC
Confidence 999876554445555555444 5669999999996
No 158
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.24 E-value=1.6e-10 Score=95.14 Aligned_cols=143 Identities=22% Similarity=0.325 Sum_probs=75.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCccccccC------CCCcceeeeeeeEEee-C--CcEEEEEeCCCCcCCCCCchHH
Q 038053 23 KRTVVLLGRTGNGKSATGNSILGRKAFKASAD------SSGVTKTCEMKTTVLK-D--GQVVNVIDTPGLFDSSAGSEFV 93 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~------~~~~t~~~~~~~~~~~-~--~~~~~l~Dtpg~~~~~~~~~~~ 93 (231)
.++|.++|.+|+|||||+|.|++......... ....+........... . ...+.++||||+.+..... ..
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~-~~ 82 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNS-DC 82 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHC-HH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccch-hh
Confidence 47899999999999999999999865433100 0001111111111111 2 3467899999998744321 22
Q ss_pred HHHHHHHHhhh-----------------cCCccEEEEEEECCCCCCHHHHHhcCCCCcHHHHHHHHHhhHHHHHhhccch
Q 038053 94 GKEIVKRIGLA-----------------KGGIHAVLVVFSVRSRFSQEEEAANGGQPYTDEFLAELKRGATELRDQQAEV 156 (231)
Q Consensus 94 ~~~~~~~~~~~-----------------~~~~~~il~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i 156 (231)
...+..++... -.++|++|++++++ ..+..+.-+.. +. .|..+++.|
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt---------~~~L~~~Di~~---mk----~Ls~~vNvI 146 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPT---------GHGLKPLDIEF---MK----RLSKRVNVI 146 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TT---------SSSS-HHHHHH---HH----HHTTTSEEE
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCC---------CccchHHHHHH---HH----HhcccccEE
Confidence 22222222111 14779999999997 22333332333 44 566666633
Q ss_pred hh---hhhhhHhhHHHHHHHHHHHHHHHH
Q 038053 157 DS---LKEYSKQEISKLMGQMQESYEDQI 182 (231)
Q Consensus 157 ~~---is~~~~~~i~~l~~~i~~~~~~~~ 182 (231)
.. -+.++...+..++..+...++++.
T Consensus 147 PvIaKaD~lt~~el~~~k~~i~~~l~~~~ 175 (281)
T PF00735_consen 147 PVIAKADTLTPEELQAFKQRIREDLEENN 175 (281)
T ss_dssp EEESTGGGS-HHHHHHHHHHHHHHHHHTT
T ss_pred eEEecccccCHHHHHHHHHHHHHHHHHcC
Confidence 22 334677888888877777665443
No 159
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.24 E-value=5.7e-12 Score=102.40 Aligned_cols=86 Identities=14% Similarity=0.059 Sum_probs=60.4
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE-----------Eee
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT-----------VLK 70 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~-----------~~~ 70 (231)
++.|+++.++++++|++.+| .+++|+|+||||||||+++|+|...+ ..|.+......... ...
T Consensus 10 ~~~~~~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~----~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 83 (250)
T PRK11264 10 VKKFHGQTVLHGIDLEVKPG--EVVAIIGPSGSGKTTLLRCINLLEQP----EAGTIRVGDITIDTARSLSQQKGLIRQL 83 (250)
T ss_pred EEEECCeeeeccceEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCC----CCeEEEECCEEccccccccchhhHHHHh
Confidence 56788788999999999999 99999999999999999999999763 33333222111000 001
Q ss_pred CCcEEEEEeCCCCcCCCCCchHH
Q 038053 71 DGQVVNVIDTPGLFDSSAGSEFV 93 (231)
Q Consensus 71 ~~~~~~l~Dtpg~~~~~~~~~~~ 93 (231)
.....++++.|.+++..+..+++
T Consensus 84 ~~~i~~v~q~~~~~~~~tv~e~l 106 (250)
T PRK11264 84 RQHVGFVFQNFNLFPHRTVLENI 106 (250)
T ss_pred hhhEEEEecCcccCCCCCHHHHH
Confidence 23567888888887655544433
No 160
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.24 E-value=9.1e-12 Score=99.76 Aligned_cols=82 Identities=20% Similarity=0.157 Sum_probs=56.9
Q ss_pred CCCCCCc----ccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eE-----EeeC
Q 038053 2 SSGMGER----VIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TT-----VLKD 71 (231)
Q Consensus 2 ~~~~~~~----~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~-----~~~~ 71 (231)
++.|++. .+++++++++++| .+++|+|+||||||||+++|+|...+ ..|.+....... .. ....
T Consensus 8 ~~~~~~~~~~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~----~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 8 SVSFPTGGGSVKALDDVSFSIKKG--ETLGLVGESGSGKSTLARAILGLLKP----TSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEeccCCCcceeeecCceeEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CCceEEECCEEccccchhhHHHhh
Confidence 5667655 7999999999999 99999999999999999999999873 344333322111 00 0113
Q ss_pred CcEEEEEeCCC--CcCCCCC
Q 038053 72 GQVVNVIDTPG--LFDSSAG 89 (231)
Q Consensus 72 ~~~~~l~Dtpg--~~~~~~~ 89 (231)
....++++.|. +++..+.
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv 101 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTI 101 (228)
T ss_pred ccEEEEecCchhhcCCcCCH
Confidence 45677888883 4443443
No 161
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.24 E-value=4.3e-11 Score=91.00 Aligned_cols=136 Identities=14% Similarity=0.135 Sum_probs=76.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeee--eeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEM--KTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVK 99 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~ 99 (231)
.+|+++|.+|+|||||++.+++..-. .....|..... ..... .+ ..+.+.||||... +..
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~----~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~ 66 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFM----ADCPHTIGVEFGTRIIEV-NGQKIKLQIWDTAGQER-----------FRA 66 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC----CCCCcccceeEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHH
Confidence 58999999999999999999877431 11122221111 11222 22 3567899999532 111
Q ss_pred HHhhhcCCccEEEEEEECCCCCCHHHHH--------h-cCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhh
Q 038053 100 RIGLAKGGIHAVLVVFSVRSRFSQEEEA--------A-NGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLK 160 (231)
Q Consensus 100 ~~~~~~~~~~~il~vvd~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is 160 (231)
.....+..+|++++|+|+++.-+..... . ....|++ .+.++.|.. ...+....+ +++.+|
T Consensus 67 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~ii-iv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S 145 (166)
T cd04122 67 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIF-LIGNKADLEAQRDVTYEEAKQFADENGLLFLECS 145 (166)
T ss_pred HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEE-EEEECcccccccCcCHHHHHHHHHHcCCEEEEEE
Confidence 1223446889999999998543322221 1 1122222 233333210 011211122 567789
Q ss_pred hhhHhhHHHHHHHHHH
Q 038053 161 EYSKQEISKLMGQMQE 176 (231)
Q Consensus 161 ~~~~~~i~~l~~~i~~ 176 (231)
+++|.|+.+++..+..
T Consensus 146 a~~~~~i~e~f~~l~~ 161 (166)
T cd04122 146 AKTGENVEDAFLETAK 161 (166)
T ss_pred CCCCCCHHHHHHHHHH
Confidence 9999999998777654
No 162
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.24 E-value=4.6e-12 Score=102.42 Aligned_cols=84 Identities=19% Similarity=0.163 Sum_probs=59.6
Q ss_pred CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE----EeeCCcEEE
Q 038053 1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT----VLKDGQVVN 76 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~ 76 (231)
+++.|+++.++++++|++++| .+++|+|+||||||||+++|+|...+ ..|.++........ ........+
T Consensus 9 l~~~~~~~~~l~~~sl~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~----~~G~i~~~g~~~~~~~~~~~~~~~i~~ 82 (241)
T PRK10895 9 LAKAYKGRRVVEDVSLTVNSG--EIVGLLGPNGAGKTTTFYMVVGIVPR----DAGNIIIDDEDISLLPLHARARRGIGY 82 (241)
T ss_pred cEEEeCCEEEEeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCC----CCcEEEECCEECCCCCHHHHHHhCeEE
Confidence 356788888999999999999 99999999999999999999999873 34433332211000 000234677
Q ss_pred EEeCCCCcCCCCCc
Q 038053 77 VIDTPGLFDSSAGS 90 (231)
Q Consensus 77 l~Dtpg~~~~~~~~ 90 (231)
+++.|.+++..+..
T Consensus 83 ~~q~~~~~~~~tv~ 96 (241)
T PRK10895 83 LPQEASIFRRLSVY 96 (241)
T ss_pred eccCCcccccCcHH
Confidence 88888777654433
No 163
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.23 E-value=1.9e-11 Score=92.99 Aligned_cols=46 Identities=20% Similarity=0.156 Sum_probs=42.8
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF 49 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~ 49 (231)
++.|++.+++++++|++++| .+++|+|+||+|||||+++|+|...+
T Consensus 7 ~~~~~~~~vl~~i~~~i~~G--e~~~l~G~nGsGKSTLl~~i~G~~~~ 52 (163)
T cd03216 7 TKRFGGVKALDGVSLSVRRG--EVHALLGENGAGKSTLMKILSGLYKP 52 (163)
T ss_pred EEEECCeEEEeeeEEEEeCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 56788888999999999999 99999999999999999999999873
No 164
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.23 E-value=2.8e-11 Score=93.11 Aligned_cols=45 Identities=13% Similarity=0.204 Sum_probs=41.2
Q ss_pred CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
+++.|++..++++. +.+++| .+++|+|+||||||||+++|+|...
T Consensus 6 l~~~~~~~~~l~~~-~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 6 CVKRYGVFFLLVEL-GVVKEG--EVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred eEEEECCEEEEccC-cEECCC--CEEEEECCCCChHHHHHHHHHcCCC
Confidence 46788988899884 899999 9999999999999999999999987
No 165
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.23 E-value=2e-10 Score=95.45 Aligned_cols=147 Identities=22% Similarity=0.289 Sum_probs=83.8
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccc---cCCC---CcceeeeeeeEEee-C--CcEEEEEeCCCCcCCCC
Q 038053 18 SSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKAS---ADSS---GVTKTCEMKTTVLK-D--GQVVNVIDTPGLFDSSA 88 (231)
Q Consensus 18 i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~---~~~~---~~t~~~~~~~~~~~-~--~~~~~l~Dtpg~~~~~~ 88 (231)
...|-.++|.++|++|.||||++|.|++....... ...+ ..|........... . ...+.++|||||.+...
T Consensus 18 ~k~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~id 97 (373)
T COG5019 18 SKKGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFID 97 (373)
T ss_pred HhcCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccc
Confidence 44677799999999999999999999998432110 0111 12222222222221 1 34678999999987543
Q ss_pred CchHHHHHHHHHHhh----h--------------cCCccEEEEEEECCCCCCHHHHHhcCCCCcHHHHHHHHHhhHHHHH
Q 038053 89 GSEFVGKEIVKRIGL----A--------------KGGIHAVLVVFSVRSRFSQEEEAANGGQPYTDEFLAELKRGATELR 150 (231)
Q Consensus 89 ~~~~~~~~~~~~~~~----~--------------~~~~~~il~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 150 (231)
- ......+..++.. . -.++|++|+++.++ ..+..++-+.+ |. .|.
T Consensus 98 N-s~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Pt---------gh~l~~~DIe~---Mk----~ls 160 (373)
T COG5019 98 N-SKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPT---------GHGLKPLDIEA---MK----RLS 160 (373)
T ss_pred c-cccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCC---------CCCCCHHHHHH---HH----HHh
Confidence 2 2222222222211 1 25789999999997 34444444333 33 444
Q ss_pred hhcc--c-hhhhhhhhHhhHHHHHHHHHHHHHHH
Q 038053 151 DQQA--E-VDSLKEYSKQEISKLMGQMQESYEDQ 181 (231)
Q Consensus 151 ~~~~--~-i~~is~~~~~~i~~l~~~i~~~~~~~ 181 (231)
..++ | |..-+.++...+..+++.+.+.++.+
T Consensus 161 ~~vNlIPVI~KaD~lT~~El~~~K~~I~~~i~~~ 194 (373)
T COG5019 161 KRVNLIPVIAKADTLTDDELAEFKERIREDLEQY 194 (373)
T ss_pred cccCeeeeeeccccCCHHHHHHHHHHHHHHHHHh
Confidence 4555 2 22233467777777777776665544
No 166
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.23 E-value=4.2e-12 Score=108.11 Aligned_cols=87 Identities=16% Similarity=0.172 Sum_probs=64.9
Q ss_pred CCCC-CCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEEeeCCcEEEEEe
Q 038053 2 SSGM-GERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTVLKDGQVVNVID 79 (231)
Q Consensus 2 ~~~~-~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~D 79 (231)
++.| ++..++++++|++++| ..++|+|+||||||||+++|+|...+ ..|.+....... ..........++++
T Consensus 10 ~~~~~~~~~~l~~vsl~i~~G--e~~~llG~sGsGKSTLLr~iaGl~~p----~~G~I~~~g~~i~~~~~~~r~ig~v~Q 83 (356)
T PRK11650 10 RKSYDGKTQVIKGIDLDVADG--EFIVLVGPSGCGKSTLLRMVAGLERI----TSGEIWIGGRVVNELEPADRDIAMVFQ 83 (356)
T ss_pred EEEeCCCCEEEeeeeEEEcCC--CEEEEECCCCCcHHHHHHHHHCCCCC----CceEEEECCEECCCCCHHHCCEEEEeC
Confidence 5678 7788999999999999 99999999999999999999999873 344333322111 00011346788999
Q ss_pred CCCCcCCCCCchHHH
Q 038053 80 TPGLFDSSAGSEFVG 94 (231)
Q Consensus 80 tpg~~~~~~~~~~~~ 94 (231)
.+.+++..++.+++.
T Consensus 84 ~~~lfp~~tv~eNi~ 98 (356)
T PRK11650 84 NYALYPHMSVRENMA 98 (356)
T ss_pred CccccCCCCHHHHHH
Confidence 999998877766553
No 167
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.23 E-value=6.9e-12 Score=98.95 Aligned_cols=84 Identities=21% Similarity=0.269 Sum_probs=59.9
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-EE------eeCCcE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-TV------LKDGQV 74 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-~~------~~~~~~ 74 (231)
++.|+++.++++++|++.+| .+++|+|+||+|||||+++|+|...+ ..|.+........ .. ......
T Consensus 5 ~~~~~~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~----~~G~i~~~g~~~~~~~~~~~~~~~~~~i 78 (206)
T TIGR03608 5 SKKFGDKIILDDLNLTIEKG--KMYAIIGESGSGKSTLLNIIGLLEKF----DSGQVYLNGKETPPLNSKKASKFRREKL 78 (206)
T ss_pred EEEECCEEEEeceEEEEeCC--cEEEEECCCCCCHHHHHHHHhcCCCC----CCeEEEECCEEccccchhhHHHHHHhCe
Confidence 56788888999999999999 99999999999999999999999873 3333332221100 00 012356
Q ss_pred EEEEeCCCCcCCCCCch
Q 038053 75 VNVIDTPGLFDSSAGSE 91 (231)
Q Consensus 75 ~~l~Dtpg~~~~~~~~~ 91 (231)
.++.+.|.+++..+..+
T Consensus 79 ~~~~q~~~~~~~~t~~e 95 (206)
T TIGR03608 79 GYLFQNFALIENETVEE 95 (206)
T ss_pred eEEecchhhccCCcHHH
Confidence 77888888877555443
No 168
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.23 E-value=1.1e-10 Score=89.90 Aligned_cols=140 Identities=14% Similarity=0.034 Sum_probs=79.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEe-----------eCCcEEEEEeCCCCcCCCCCchH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVL-----------KDGQVVNVIDTPGLFDSSAGSEF 92 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-----------~~~~~~~l~Dtpg~~~~~~~~~~ 92 (231)
.+|+++|++|||||||++.+++...... ..+....+........ .....+.++||||...
T Consensus 5 ~ki~ivG~~~vGKTsli~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~------- 75 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTDNKFNPK--FITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQER------- 75 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCcc--CCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHH-------
Confidence 6899999999999999999988653111 1111111111111111 0235677999999332
Q ss_pred HHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH--------h--cCCCCcHHHHHHHHHhh---------HHHHHhhc
Q 038053 93 VGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA--------A--NGGQPYTDEFLAELKRG---------ATELRDQQ 153 (231)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~--------~--~~~~~~~~~~~~~~~~~---------~~~l~~~~ 153 (231)
+.......+..+|++++|+|+++.-+..+.. . ....|++ .+.++.|.. ...+....
T Consensus 76 ----~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-iv~nK~Dl~~~~~v~~~~~~~~~~~~ 150 (180)
T cd04127 76 ----FRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIV-LCGNKADLEDQRQVSEEQAKALADKY 150 (180)
T ss_pred ----HHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE-EEEeCccchhcCccCHHHHHHHHHHc
Confidence 2222333457889999999998533322221 1 1122333 233443311 01222222
Q ss_pred c-chhhhhhhhHhhHHHHHHHHHHH
Q 038053 154 A-EVDSLKEYSKQEISKLMGQMQES 177 (231)
Q Consensus 154 ~-~i~~is~~~~~~i~~l~~~i~~~ 177 (231)
+ +++.+|+++|.|+++++..+...
T Consensus 151 ~~~~~e~Sak~~~~v~~l~~~l~~~ 175 (180)
T cd04127 151 GIPYFETSAATGTNVEKAVERLLDL 175 (180)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 2 67789999999999998887653
No 169
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.23 E-value=7e-12 Score=101.42 Aligned_cols=86 Identities=21% Similarity=0.184 Sum_probs=60.5
Q ss_pred CCCCCC-cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee---EEeeCCcEEEE
Q 038053 2 SSGMGE-RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT---TVLKDGQVVNV 77 (231)
Q Consensus 2 ~~~~~~-~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~l 77 (231)
++.|++ ..+++++++++.+| .+++|+|+||+|||||+++|+|...+ ..|.+........ .........++
T Consensus 7 ~~~~~~~~~~l~~is~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~----~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (242)
T cd03295 7 TKRYGGGKKAVNNLNLEIAKG--EFLVLIGPSGSGKTTTMKMINRLIEP----TSGEIFIDGEDIREQDPVELRRKIGYV 80 (242)
T ss_pred EEEeCCcceEeeeeEEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCC----CCceEEECCeEcCcCChHHhhcceEEE
Confidence 566777 78999999999999 99999999999999999999999773 3333332221100 00012356788
Q ss_pred EeCCCCcCCCCCchHH
Q 038053 78 IDTPGLFDSSAGSEFV 93 (231)
Q Consensus 78 ~Dtpg~~~~~~~~~~~ 93 (231)
++.|.+++..+..+++
T Consensus 81 ~q~~~~~~~~tv~e~l 96 (242)
T cd03295 81 IQQIGLFPHMTVEENI 96 (242)
T ss_pred ccCccccCCCcHHHHH
Confidence 8988888755544443
No 170
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.23 E-value=4.3e-12 Score=99.73 Aligned_cols=85 Identities=13% Similarity=0.006 Sum_probs=59.5
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee--EEeeCCcEEEEEe
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT--TVLKDGQVVNVID 79 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~l~D 79 (231)
++.|++.++++++++++.+| .+++|+|+||+|||||+++|+|...+ ..|.++....... .........++.+
T Consensus 8 ~~~~~~~~il~~~s~~i~~G--e~~~l~G~nGsGKSTLl~~i~G~~~~----~~G~v~~~g~~~~~~~~~~~~~i~~~~q 81 (200)
T PRK13540 8 DFDYHDQPLLQQISFHLPAG--GLLHLKGSNGAGKTTLLKLIAGLLNP----EKGEILFERQSIKKDLCTYQKQLCFVGH 81 (200)
T ss_pred EEEeCCeeEEeeeeEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCC----CCeeEEECCCccccCHHHHHhheEEecc
Confidence 56788888999999999999 99999999999999999999999873 3333332211100 0001234667788
Q ss_pred CCCCcCCCCCchH
Q 038053 80 TPGLFDSSAGSEF 92 (231)
Q Consensus 80 tpg~~~~~~~~~~ 92 (231)
.+.+++..+..++
T Consensus 82 ~~~~~~~~tv~~~ 94 (200)
T PRK13540 82 RSGINPYLTLREN 94 (200)
T ss_pred ccccCcCCCHHHH
Confidence 7777665444433
No 171
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.23 E-value=5.2e-12 Score=100.21 Aligned_cols=75 Identities=16% Similarity=0.140 Sum_probs=55.2
Q ss_pred CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeC
Q 038053 1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDT 80 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dt 80 (231)
+++.|++..+++++++++++| .+++|+|+||||||||+++|+|...+ ..|.++....... .. .....++++.
T Consensus 5 l~~~~~~~~~l~~isl~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~p----~~G~i~~~g~~~~-~~-~~~i~~v~q~ 76 (213)
T cd03235 5 LTVSYGGHPVLEDVSFEVKPG--EFLAIVGPNGAGKSTLLKAILGLLKP----TSGSIRVFGKPLE-KE-RKRIGYVPQR 76 (213)
T ss_pred ceeEECCEEeeecceeEEcCC--CEEEEECCCCCCHHHHHHHHcCCCCC----CCCEEEECCccHH-HH-HhheEEeccc
Confidence 356788788999999999999 99999999999999999999999763 3443332211000 11 2346777887
Q ss_pred CCC
Q 038053 81 PGL 83 (231)
Q Consensus 81 pg~ 83 (231)
|.+
T Consensus 77 ~~~ 79 (213)
T cd03235 77 RSI 79 (213)
T ss_pred ccc
Confidence 765
No 172
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.23 E-value=8.9e-12 Score=98.29 Aligned_cols=50 Identities=24% Similarity=0.159 Sum_probs=44.3
Q ss_pred CCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcce
Q 038053 5 MGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTK 60 (231)
Q Consensus 5 ~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~ 60 (231)
+...++|+|++|++.+| .+|||||+||||||||++.|+|... |+.|.+++
T Consensus 37 ~~~~~aL~disf~i~~G--e~vGiiG~NGaGKSTLlkliaGi~~----Pt~G~v~v 86 (249)
T COG1134 37 VAEFWALKDISFEIYKG--ERVGIIGHNGAGKSTLLKLIAGIYK----PTSGKVKV 86 (249)
T ss_pred cceEEEecCceEEEeCC--CEEEEECCCCCcHHHHHHHHhCccC----CCCceEEE
Confidence 45678999999999999 9999999999999999999999998 55665554
No 173
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.23 E-value=2e-10 Score=87.22 Aligned_cols=139 Identities=17% Similarity=0.147 Sum_probs=79.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
.+|+++|++|||||||++.+++...... ..++.+.+........ .+ ..+.++||||... +....
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~-----------~~~~~ 68 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTES--YISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQER-----------FRTIT 68 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEEEE-CCEEEEEEEEECCCcHh-----------HHHHH
Confidence 5899999999999999999998654211 1222222222222222 22 3567899999543 11112
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH--------hc-CCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhhh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------AN-GGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKEY 162 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~~ 162 (231)
...+..+|++++|+|+++.-+..... .. ...|++ .+.++.|.. ...+....+ +++.+|+.
T Consensus 69 ~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~i-iv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 147 (166)
T cd01869 69 SSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKL-LVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAK 147 (166)
T ss_pred HHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEE-EEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECC
Confidence 23346789999999998532222111 11 223333 233433310 012222222 67789999
Q ss_pred hHhhHHHHHHHHHHH
Q 038053 163 SKQEISKLMGQMQES 177 (231)
Q Consensus 163 ~~~~i~~l~~~i~~~ 177 (231)
+|.|+.+++..+...
T Consensus 148 ~~~~v~~~~~~i~~~ 162 (166)
T cd01869 148 NATNVEQAFMTMARE 162 (166)
T ss_pred CCcCHHHHHHHHHHH
Confidence 999999998887654
No 174
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.22 E-value=9.3e-12 Score=99.47 Aligned_cols=83 Identities=23% Similarity=0.217 Sum_probs=58.4
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCC
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTP 81 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtp 81 (231)
++.|++++++++++|++.+| .+++|+|+||+|||||+++|+|...+ ..|.+........... .....++++.+
T Consensus 7 ~~~~~~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~----~~G~i~~~~~~~~~~~-~~~~~~~~q~~ 79 (223)
T TIGR03740 7 SKRFGKQTAVNNISLTVPKN--SVYGLLGPNGAGKSTLLKMITGILRP----TSGEIIFDGHPWTRKD-LHKIGSLIESP 79 (223)
T ss_pred EEEECCEEEEeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCC----CceEEEECCEeccccc-cccEEEEcCCC
Confidence 46777788999999999999 99999999999999999999999763 3343332221100000 12456778888
Q ss_pred CCcCCCCCch
Q 038053 82 GLFDSSAGSE 91 (231)
Q Consensus 82 g~~~~~~~~~ 91 (231)
.+++..+..+
T Consensus 80 ~~~~~~t~~~ 89 (223)
T TIGR03740 80 PLYENLTARE 89 (223)
T ss_pred CccccCCHHH
Confidence 7776544433
No 175
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.22 E-value=5.9e-12 Score=101.74 Aligned_cols=85 Identities=19% Similarity=0.129 Sum_probs=60.2
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE-----EeeCCcEEE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT-----VLKDGQVVN 76 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~-----~~~~~~~~~ 76 (231)
+++|+++.++++++|++.+| .+++|+|+||+|||||+++|+|...+ ..|.+......... ........+
T Consensus 8 ~~~~~~~~il~~~s~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~----~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 81 (240)
T PRK09493 8 SKHFGPTQVLHNIDLNIDQG--EVVVIIGPSGSGKSTLLRCINKLEEI----TSGDLIVDGLKVNDPKVDERLIRQEAGM 81 (240)
T ss_pred EEEECCeEEeeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCC----CceEEEECCEECCcCChhHHHHhhceEE
Confidence 56777788999999999999 99999999999999999999999763 33433332211000 011234677
Q ss_pred EEeCCCCcCCCCCchH
Q 038053 77 VIDTPGLFDSSAGSEF 92 (231)
Q Consensus 77 l~Dtpg~~~~~~~~~~ 92 (231)
+++.+.+++..+..++
T Consensus 82 ~~q~~~~~~~~tv~~~ 97 (240)
T PRK09493 82 VFQQFYLFPHLTALEN 97 (240)
T ss_pred EecccccCCCCcHHHH
Confidence 8888888765544433
No 176
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.22 E-value=5.7e-12 Score=99.61 Aligned_cols=82 Identities=15% Similarity=0.041 Sum_probs=56.0
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCC
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTP 81 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtp 81 (231)
+++|+++.++++++|++++| .+++|+|+||+|||||+++|+|...+ ..|.++................++.+.+
T Consensus 9 ~~~~~~~~~l~~is~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~----~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 82 (207)
T PRK13539 9 ACVRGGRVLFSGLSFTLAAG--EALVLTGPNGSGKTTLLRLIAGLLPP----AAGTIKLDGGDIDDPDVAEACHYLGHRN 82 (207)
T ss_pred EEEECCeEEEeceEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CCceEEECCEeCcchhhHhhcEEecCCC
Confidence 56788888999999999999 99999999999999999999999773 3343332221100000123345666666
Q ss_pred CCcCCCCC
Q 038053 82 GLFDSSAG 89 (231)
Q Consensus 82 g~~~~~~~ 89 (231)
.+++..+.
T Consensus 83 ~~~~~~tv 90 (207)
T PRK13539 83 AMKPALTV 90 (207)
T ss_pred cCCCCCcH
Confidence 66554433
No 177
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.22 E-value=4.5e-12 Score=107.77 Aligned_cols=88 Identities=17% Similarity=0.138 Sum_probs=66.3
Q ss_pred CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-EEeeCCcEEEEEe
Q 038053 1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-TVLKDGQVVNVID 79 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~D 79 (231)
+++.|++..++++++|++++| .+++|+|+||||||||+++|+|...+ +.|.+..+..... ........++++|
T Consensus 10 l~~~~~~~~~l~~vs~~i~~G--e~~~l~GpsGsGKSTLLr~iaGl~~p----~~G~I~i~g~~~~~~~~~~r~ig~v~Q 83 (353)
T TIGR03265 10 IRKRFGAFTALKDISLSVKKG--EFVCLLGPSGCGKTTLLRIIAGLERQ----TAGTIYQGGRDITRLPPQKRDYGIVFQ 83 (353)
T ss_pred EEEEeCCeEEEEeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHCCCCC----CceEEEECCEECCCCCHHHCCEEEEeC
Confidence 356788888999999999999 99999999999999999999999873 4444433322110 0011345788999
Q ss_pred CCCCcCCCCCchHHH
Q 038053 80 TPGLFDSSAGSEFVG 94 (231)
Q Consensus 80 tpg~~~~~~~~~~~~ 94 (231)
.+.++++.++.+++.
T Consensus 84 ~~~lfp~~tv~eNi~ 98 (353)
T TIGR03265 84 SYALFPNLTVADNIA 98 (353)
T ss_pred CcccCCCCcHHHHHH
Confidence 999999887766653
No 178
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.22 E-value=9.2e-12 Score=100.70 Aligned_cols=86 Identities=17% Similarity=0.161 Sum_probs=61.2
Q ss_pred CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-EE---eeCCcEEE
Q 038053 1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-TV---LKDGQVVN 76 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-~~---~~~~~~~~ 76 (231)
+++.|++.+++++++|++.+| .+++|+|+||+|||||+++|+|...+ ..|.++....... .. .......+
T Consensus 8 l~~~~~~~~~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~p----~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (242)
T TIGR03411 8 LSVSFDGFKALNDLSLYVDPG--ELRVIIGPNGAGKTTMMDVITGKTRP----DEGSVLFGGTDLTGLPEHQIARAGIGR 81 (242)
T ss_pred eEEEcCCeEEeeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCC----CCCeEEECCeecCCCCHHHHHhcCeeE
Confidence 356788788999999999999 99999999999999999999999763 3443333221100 00 00234677
Q ss_pred EEeCCCCcCCCCCchH
Q 038053 77 VIDTPGLFDSSAGSEF 92 (231)
Q Consensus 77 l~Dtpg~~~~~~~~~~ 92 (231)
+++.+.+++..+..++
T Consensus 82 ~~q~~~~~~~~tv~~n 97 (242)
T TIGR03411 82 KFQKPTVFENLTVFEN 97 (242)
T ss_pred eccccccCCCCCHHHH
Confidence 8888888876554443
No 179
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.22 E-value=7.3e-12 Score=98.30 Aligned_cols=84 Identities=19% Similarity=0.158 Sum_probs=57.9
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eE-EeeCCcEEEEEe
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TT-VLKDGQVVNVID 79 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~-~~~~~~~~~l~D 79 (231)
++.|+++.++++++|++.+| .+++|+|+||+|||||+++|+|...+ ..|.+....... .. ........++.+
T Consensus 7 ~~~~~~~~~l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~----~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (198)
T TIGR01189 7 ACSRGERMLFEGLSFTLNAG--EALQVTGPNGIGKTTLLRILAGLLRP----DSGEVRWNGTALAEQRDEPHRNILYLGH 80 (198)
T ss_pred EEEECCEEEEeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCC----CccEEEECCEEcccchHHhhhheEEecc
Confidence 56788889999999999999 99999999999999999999999763 333332221110 00 000234566777
Q ss_pred CCCCcCCCCCch
Q 038053 80 TPGLFDSSAGSE 91 (231)
Q Consensus 80 tpg~~~~~~~~~ 91 (231)
.+.+++..+..+
T Consensus 81 ~~~~~~~~tv~~ 92 (198)
T TIGR01189 81 LPGLKPELSALE 92 (198)
T ss_pred CcccccCCcHHH
Confidence 777765444333
No 180
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.22 E-value=6.4e-12 Score=99.11 Aligned_cols=75 Identities=15% Similarity=0.127 Sum_probs=53.9
Q ss_pred CCCCCC-cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeC
Q 038053 2 SSGMGE-RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDT 80 (231)
Q Consensus 2 ~~~~~~-~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dt 80 (231)
++.|++ +.++++++|++.+| .+++|+|+||||||||+++|+|...+ ..|.++................++++.
T Consensus 6 ~~~~~~~~~~l~~v~~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p----~~G~i~~~g~~~~~~~~~~~i~~~~q~ 79 (205)
T cd03226 6 SFSYKKGTEILDDLSLDLYAG--EIIALTGKNGAGKTTLAKILAGLIKE----SSGSILLNGKPIKAKERRKSIGYVMQD 79 (205)
T ss_pred EEEeCCcCceeeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCC----CceEEEECCEEhhhHHhhcceEEEecC
Confidence 567777 78999999999999 99999999999999999999999873 344333222110000112346778887
Q ss_pred CC
Q 038053 81 PG 82 (231)
Q Consensus 81 pg 82 (231)
|.
T Consensus 80 ~~ 81 (205)
T cd03226 80 VD 81 (205)
T ss_pred hh
Confidence 64
No 181
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.22 E-value=7.3e-12 Score=98.76 Aligned_cols=84 Identities=18% Similarity=0.141 Sum_probs=58.6
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eE-EeeCCcEEEEEe
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TT-VLKDGQVVNVID 79 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~-~~~~~~~~~l~D 79 (231)
++.|+++.++++++|++++| .+++|+|+||||||||+++|+|...+ ..|.+....... .. ........++.+
T Consensus 8 ~~~~~~~~~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~p----~~G~v~~~g~~~~~~~~~~~~~~~~~~~ 81 (204)
T PRK13538 8 ACERDERILFSGLSFTLNAG--ELVQIEGPNGAGKTSLLRILAGLARP----DAGEVLWQGEPIRRQRDEYHQDLLYLGH 81 (204)
T ss_pred EEEECCEEEEecceEEECCC--cEEEEECCCCCCHHHHHHHHhCCCCC----CCcEEEECCEEcccchHHhhhheEEeCC
Confidence 56778888999999999999 99999999999999999999999873 333333221110 00 001234566777
Q ss_pred CCCCcCCCCCch
Q 038053 80 TPGLFDSSAGSE 91 (231)
Q Consensus 80 tpg~~~~~~~~~ 91 (231)
.+.+++..+..+
T Consensus 82 ~~~~~~~~tv~e 93 (204)
T PRK13538 82 QPGIKTELTALE 93 (204)
T ss_pred ccccCcCCcHHH
Confidence 777776544433
No 182
>PRK10908 cell division protein FtsE; Provisional
Probab=99.22 E-value=9.2e-12 Score=99.42 Aligned_cols=82 Identities=16% Similarity=0.068 Sum_probs=58.0
Q ss_pred CCCC-CCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEE-----eeCCcE
Q 038053 2 SSGM-GERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTV-----LKDGQV 74 (231)
Q Consensus 2 ~~~~-~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~-----~~~~~~ 74 (231)
++.| +++.++++++|++.+| .+++|+|+||||||||+++|+|...+ ..|.+....... ... ......
T Consensus 8 ~~~~~~~~~~l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~----~~G~i~~~g~~i~~~~~~~~~~~~~~i 81 (222)
T PRK10908 8 SKAYLGGRQALQGVTFHMRPG--EMAFLTGHSGAGKSTLLKLICGIERP----SAGKIWFSGHDITRLKNREVPFLRRQI 81 (222)
T ss_pred EEEecCCCeEEeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CceEEEECCEEcccCChhHHHHHHhhe
Confidence 5567 6678999999999999 99999999999999999999999873 344333322110 000 002356
Q ss_pred EEEEeCCCCcCCCCC
Q 038053 75 VNVIDTPGLFDSSAG 89 (231)
Q Consensus 75 ~~l~Dtpg~~~~~~~ 89 (231)
.++++.|.+++..+.
T Consensus 82 ~~~~q~~~~~~~~tv 96 (222)
T PRK10908 82 GMIFQDHHLLMDRTV 96 (222)
T ss_pred EEEecCccccccccH
Confidence 788888887654443
No 183
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.21 E-value=7.1e-12 Score=99.44 Aligned_cols=85 Identities=15% Similarity=0.063 Sum_probs=59.5
Q ss_pred CCCCCC-cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE------EeeCCcE
Q 038053 2 SSGMGE-RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT------VLKDGQV 74 (231)
Q Consensus 2 ~~~~~~-~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~------~~~~~~~ 74 (231)
++.|++ +.+++++++++.+| .+++|+|+||||||||+++|+|...+ ..|.++........ .......
T Consensus 7 ~~~~~~~~~~l~~~sl~i~~G--~~~~i~G~nGsGKSTLl~~l~G~~~~----~~G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 7 TKTYPNGTAALDGINISISAG--EFVFLVGPSGAGKSTLLKLIYKEELP----TSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred EEEeCCCceeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCC----CceEEEECCEEcccCCHHHHHHHHHhe
Confidence 456753 67999999999999 99999999999999999999999763 33433332211000 0012356
Q ss_pred EEEEeCCCCcCCCCCchH
Q 038053 75 VNVIDTPGLFDSSAGSEF 92 (231)
Q Consensus 75 ~~l~Dtpg~~~~~~~~~~ 92 (231)
.++++.|.+++..+..++
T Consensus 81 ~~v~q~~~~~~~~t~~~~ 98 (214)
T cd03292 81 GVVFQDFRLLPDRNVYEN 98 (214)
T ss_pred EEEecCchhccCCcHHHH
Confidence 788999988875554443
No 184
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.21 E-value=2e-10 Score=95.99 Aligned_cols=150 Identities=20% Similarity=0.306 Sum_probs=86.5
Q ss_pred cCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcccc-----ccCCCCcceeeeeeeEEee-C--CcEEEEEeCCCCcCCC
Q 038053 16 PTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKA-----SADSSGVTKTCEMKTTVLK-D--GQVVNVIDTPGLFDSS 87 (231)
Q Consensus 16 ~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~-----~~~~~~~t~~~~~~~~~~~-~--~~~~~l~Dtpg~~~~~ 87 (231)
..+..|-.+.+.++|.+|.|||||+|.|++...... ....+..|........... + ...+.|+||||+.+..
T Consensus 14 ~~~KkG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~v 93 (366)
T KOG2655|consen 14 KSVKKGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAV 93 (366)
T ss_pred HHHhcCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccc
Confidence 345677779999999999999999999999854221 0111212222222222221 2 2467789999998644
Q ss_pred CCc-------hHHHHHHHHHHhh-------hc--CCccEEEEEEECCCCCCHHHHHhcCCCCcHHHHHHHHHhhHHHHHh
Q 038053 88 AGS-------EFVGKEIVKRIGL-------AK--GGIHAVLVVFSVRSRFSQEEEAANGGQPYTDEFLAELKRGATELRD 151 (231)
Q Consensus 88 ~~~-------~~~~~~~~~~~~~-------~~--~~~~~il~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 151 (231)
.-. +.+...+..++.. .. .++|++|+++.++ ..+..|+-+.. |. .|..
T Consensus 94 dns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~---------ghgL~p~Di~~---Mk----~l~~ 157 (366)
T KOG2655|consen 94 DNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPT---------GHGLKPLDIEF---MK----KLSK 157 (366)
T ss_pred cccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCC---------CCCCcHhhHHH---HH----HHhc
Confidence 221 1222223333221 11 3889999999998 34455554444 33 3444
Q ss_pred hcc---chhhhhhhhHhhHHHHHHHHHHHHHHH
Q 038053 152 QQA---EVDSLKEYSKQEISKLMGQMQESYEDQ 181 (231)
Q Consensus 152 ~~~---~i~~is~~~~~~i~~l~~~i~~~~~~~ 181 (231)
.++ -|..-..++...+..++..+.+..+.+
T Consensus 158 ~vNiIPVI~KaD~lT~~El~~~K~~I~~~i~~~ 190 (366)
T KOG2655|consen 158 KVNLIPVIAKADTLTKDELNQFKKRIRQDIEEH 190 (366)
T ss_pred cccccceeeccccCCHHHHHHHHHHHHHHHHHc
Confidence 444 223334567777777777776655444
No 185
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.21 E-value=1.6e-11 Score=94.07 Aligned_cols=116 Identities=20% Similarity=0.128 Sum_probs=69.8
Q ss_pred CCCCCCc--ccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eE--EeeCCcEEE
Q 038053 2 SSGMGER--VIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TT--VLKDGQVVN 76 (231)
Q Consensus 2 ~~~~~~~--~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~--~~~~~~~~~ 76 (231)
++.|++. .++++++|++++| ..++|+|+||+|||||+++|+|...+ ..|.+....... .. ........+
T Consensus 7 ~~~~~~~~~~~l~~i~~~i~~G--~~~~l~G~nGsGKstLl~~i~G~~~~----~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 7 SFSYPGRPKPVLKDVSLTIKPG--EKVAIVGPSGSGKSTLLKLLLRLYDP----TSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred EEEcCCCCcccccceEEEEcCC--CEEEEECCCCCCHHHHHHHHHcCCCC----CCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 4567665 7999999999999 99999999999999999999999873 333332221110 00 000234567
Q ss_pred EEeCCCCcCCCCCchHH---HHHHHHHHhhhc-CCccEEEEEEECCCCCCHHH
Q 038053 77 VIDTPGLFDSSAGSEFV---GKEIVKRIGLAK-GGIHAVLVVFSVRSRFSQEE 125 (231)
Q Consensus 77 l~Dtpg~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~il~vvd~~~~~~~~~ 125 (231)
+++.|.+++. +..+++ ++.-+-.+..++ ..+ .++++.+++.+++...
T Consensus 81 ~~~~~~~~~~-t~~e~lLS~G~~~rl~la~al~~~p-~llllDEP~~gLD~~~ 131 (171)
T cd03228 81 VPQDPFLFSG-TIRENILSGGQRQRIAIARALLRDP-PILILDEATSALDPET 131 (171)
T ss_pred EcCCchhccc-hHHHHhhCHHHHHHHHHHHHHhcCC-CEEEEECCCcCCCHHH
Confidence 7888776652 333221 111111222332 344 5666666765555444
No 186
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.21 E-value=5.8e-11 Score=106.81 Aligned_cols=138 Identities=16% Similarity=0.234 Sum_probs=87.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
++|+++|.+|+|||||++.|.+...... ..+++|.........+..+..+.++||||.... ......
T Consensus 88 p~V~I~Ghvd~GKTSLl~~l~~~~v~~~--e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F-----------~~~r~r 154 (587)
T TIGR00487 88 PVVTIMGHVDHGKTSLLDSIRKTKVAQG--EAGGITQHIGAYHVENEDGKMITFLDTPGHEAF-----------TSMRAR 154 (587)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcccc--cCCceeecceEEEEEECCCcEEEEEECCCCcch-----------hhHHHh
Confidence 7999999999999999999998754321 345566554444444423348899999996542 111223
Q ss_pred hcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhh---H----HHHHhh------c---cchhhhhhh
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRG---A----TELRDQ------Q---AEVDSLKEY 162 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~---~----~~l~~~------~---~~i~~is~~ 162 (231)
....+|.+++|+|+.+++...... .....|++ .++|++|.. . ..+... . .+++++||+
T Consensus 155 ga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiI-VviNKiDl~~~~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAk 233 (587)
T TIGR00487 155 GAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPII-VAINKIDKPEANPDRVKQELSEYGLVPEDWGGDTIFVPVSAL 233 (587)
T ss_pred hhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEE-EEEECcccccCCHHHHHHHHHHhhhhHHhcCCCceEEEEECC
Confidence 446789999999998666544433 12233433 334444321 0 112111 0 147789999
Q ss_pred hHhhHHHHHHHHH
Q 038053 163 SKQEISKLMGQMQ 175 (231)
Q Consensus 163 ~~~~i~~l~~~i~ 175 (231)
+|.|+.+++..+.
T Consensus 234 tGeGI~eLl~~I~ 246 (587)
T TIGR00487 234 TGDGIDELLDMIL 246 (587)
T ss_pred CCCChHHHHHhhh
Confidence 9999999988775
No 187
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.21 E-value=9.2e-12 Score=102.32 Aligned_cols=86 Identities=20% Similarity=0.160 Sum_probs=61.1
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-E-----EeeCCcEE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-T-----VLKDGQVV 75 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-~-----~~~~~~~~ 75 (231)
++.|+++.++++++|++++| .+++|+|+||||||||+++|+|...+ ..|.+........ . ........
T Consensus 14 ~~~~~~~~il~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p----~~G~i~~~g~~i~~~~~~~~~~~~~~i~ 87 (269)
T PRK11831 14 SFTRGNRCIFDNISLTVPRG--KITAIMGPSGIGKTTLLRLIGGQIAP----DHGEILFDGENIPAMSRSRLYTVRKRMS 87 (269)
T ss_pred EEEECCEEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CCceEEECCEEccccChhhHHHHhhcEE
Confidence 56778888999999999999 99999999999999999999999873 3343333221100 0 00023467
Q ss_pred EEEeCCCCcCCCCCchHH
Q 038053 76 NVIDTPGLFDSSAGSEFV 93 (231)
Q Consensus 76 ~l~Dtpg~~~~~~~~~~~ 93 (231)
++++.+.+++..+..+++
T Consensus 88 ~v~q~~~~~~~~tv~enl 105 (269)
T PRK11831 88 MLFQSGALFTDMNVFDNV 105 (269)
T ss_pred EEecccccCCCCCHHHHH
Confidence 788888887765554443
No 188
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.21 E-value=5.3e-10 Score=86.63 Aligned_cols=138 Identities=14% Similarity=0.066 Sum_probs=79.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEEee--CCcEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTVLK--DGQVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
+|+++|.+|+|||||++.+++.... .....|...... ..... ....+.+.||||... +....
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~----~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~-----------~~~~~ 66 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFP----EEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEE-----------YDRLR 66 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCC----CCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchh-----------HHHHH
Confidence 6999999999999999999987642 222222222221 12221 123577899999542 11112
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHh-------------hHHHHHhhcc--chh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKR-------------GATELRDQQA--EVD 157 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~-------------~~~~l~~~~~--~i~ 157 (231)
...+..+|++++|+|.++.-+..+.. .....|++ .+.++.|. +...+....+ +++
T Consensus 67 ~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 145 (187)
T cd04132 67 PLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIM-LVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYL 145 (187)
T ss_pred HHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE-EEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEE
Confidence 22357889999999998543332221 11233443 23333321 0012222222 567
Q ss_pred hhhhhhHhhHHHHHHHHHHHH
Q 038053 158 SLKEYSKQEISKLMGQMQESY 178 (231)
Q Consensus 158 ~is~~~~~~i~~l~~~i~~~~ 178 (231)
.+|+++|.|+.+++..+....
T Consensus 146 e~Sa~~~~~v~~~f~~l~~~~ 166 (187)
T cd04132 146 ECSAKTMENVEEVFDTAIEEA 166 (187)
T ss_pred EccCCCCCCHHHHHHHHHHHH
Confidence 789999999999888877653
No 189
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.21 E-value=3.4e-11 Score=92.50 Aligned_cols=117 Identities=19% Similarity=0.127 Sum_probs=70.8
Q ss_pred CCCCCC--cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee---EEeeCCcEEE
Q 038053 2 SSGMGE--RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT---TVLKDGQVVN 76 (231)
Q Consensus 2 ~~~~~~--~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~ 76 (231)
+++|++ ..+++++++++++| ..++|+|+||+|||||+++|+|...+ ..|.+........ .........+
T Consensus 7 ~~~~~~~~~~~l~~~~~~i~~G--e~~~i~G~nGsGKStLl~~l~G~~~~----~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 7 SFRYPGAEPPVLRNVSFSIEPG--ESLAIIGPSGSGKSTLARLILGLLRP----TSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred EEEcCCCCCcceeeeEEEECCC--CEEEEECCCCCCHHHHHHHHHhccCC----CCCeEEECCEEcccCCHHHHHhheEE
Confidence 456654 56999999999999 99999999999999999999999873 3443332221100 0001245677
Q ss_pred EEeCCCCcCCCCCchHH---HHHHHHHHhhhcCCccEEEEEEECCCCCCHHH
Q 038053 77 VIDTPGLFDSSAGSEFV---GKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEE 125 (231)
Q Consensus 77 l~Dtpg~~~~~~~~~~~---~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~ 125 (231)
+.+.|.+++. +..+++ ++.-+-.+..++.....++++-+++..++...
T Consensus 81 ~~q~~~~~~~-tv~~~lLS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~ 131 (173)
T cd03246 81 LPQDDELFSG-SIAENILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEG 131 (173)
T ss_pred ECCCCccccC-cHHHHCcCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHH
Confidence 8888877653 333321 22222223333333334666666765555444
No 190
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.21 E-value=1.3e-10 Score=87.84 Aligned_cols=140 Identities=17% Similarity=0.139 Sum_probs=77.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEee-CCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG 102 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~ 102 (231)
.+|+++|++|||||||+|.+++...........+.+. ........ ....+.++|+||... +.....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~v~~~~~~~~~~i~D~~G~~~-----------~~~~~~ 68 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAF--LTQTVNLDDTTVKFEIWDTAGQER-----------YRSLAP 68 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeE--EEEEEEECCEEEEEEEEeCCchHH-----------HHHHHH
Confidence 5899999999999999999999875321111111111 11112221 234577899999432 111122
Q ss_pred hhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhh------H---HHHHhhc-cchhhhhhhh
Q 038053 103 LAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRG------A---TELRDQQ-AEVDSLKEYS 163 (231)
Q Consensus 103 ~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~------~---~~l~~~~-~~i~~is~~~ 163 (231)
..+..+|++++++|+++.-+..... .....|++ .+.++.+.. . ..+.... .+++.+|+.+
T Consensus 69 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ii-vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 147 (163)
T cd01860 69 MYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIA-LVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKT 147 (163)
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEE-EEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCC
Confidence 2346789999999998432221111 11122232 223333311 0 1111111 2577889999
Q ss_pred HhhHHHHHHHHHHH
Q 038053 164 KQEISKLMGQMQES 177 (231)
Q Consensus 164 ~~~i~~l~~~i~~~ 177 (231)
|.|+..++..+.+.
T Consensus 148 ~~~v~~l~~~l~~~ 161 (163)
T cd01860 148 GENVNELFTEIAKK 161 (163)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999998887653
No 191
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.21 E-value=6.4e-12 Score=106.88 Aligned_cols=86 Identities=21% Similarity=0.189 Sum_probs=63.9
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEEeeCCcEEEEEeC
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTVLKDGQVVNVIDT 80 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~Dt 80 (231)
++.|++..++++++|++.+| .+++|+|+||||||||+++|+|...+ ..|.++.+.... ..........++++.
T Consensus 9 ~~~~~~~~~l~~isl~i~~G--e~~~llGpsGsGKSTLLr~IaGl~~p----~~G~I~i~g~~i~~~~~~~r~i~~v~Q~ 82 (353)
T PRK10851 9 KKSFGRTQVLNDISLDIPSG--QMVALLGPSGSGKTTLLRIIAGLEHQ----TSGHIRFHGTDVSRLHARDRKVGFVFQH 82 (353)
T ss_pred EEEeCCeEEEEEeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CCcEEEECCEECCCCCHHHCCEEEEecC
Confidence 56788888999999999999 99999999999999999999999873 444443322211 000112457889999
Q ss_pred CCCcCCCCCchHH
Q 038053 81 PGLFDSSAGSEFV 93 (231)
Q Consensus 81 pg~~~~~~~~~~~ 93 (231)
+.+++..++.+++
T Consensus 83 ~~l~p~~tv~eni 95 (353)
T PRK10851 83 YALFRHMTVFDNI 95 (353)
T ss_pred cccCCCCcHHHHH
Confidence 9998876665544
No 192
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.21 E-value=6.4e-12 Score=99.32 Aligned_cols=84 Identities=21% Similarity=0.287 Sum_probs=58.9
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEEeeCCcEEEEEeC
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTVLKDGQVVNVIDT 80 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~Dt 80 (231)
++.|++.+++++++|++.+| ..++|+|+||||||||+++|+|...+ ..|.+....... ..........++++.
T Consensus 7 ~~~~~~~~~l~~~~~~i~~G--~~~~i~G~nGsGKSTLl~~l~Gl~~~----~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 80 (208)
T cd03268 7 TKTYGKKRVLDDISLHVKKG--EIYGFLGPNGAGKTTTMKIILGLIKP----DSGEITFDGKSYQKNIEALRRIGALIEA 80 (208)
T ss_pred EEEECCeEeEeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCcCC----CceEEEECCCcccchHHHHhhEEEecCC
Confidence 56777788999999999999 99999999999999999999999763 333333221100 000012346678888
Q ss_pred CCCcCCCCCch
Q 038053 81 PGLFDSSAGSE 91 (231)
Q Consensus 81 pg~~~~~~~~~ 91 (231)
+.+++..+..+
T Consensus 81 ~~~~~~~tv~e 91 (208)
T cd03268 81 PGFYPNLTARE 91 (208)
T ss_pred CccCccCcHHH
Confidence 87776554433
No 193
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.21 E-value=9.6e-12 Score=101.23 Aligned_cols=85 Identities=15% Similarity=0.171 Sum_probs=60.5
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-E-------------
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-T------------- 67 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-~------------- 67 (231)
++.|++..++++++|++.+| .+++|+|+||||||||+++|+|...+ ..|.++....... .
T Consensus 7 ~~~~~~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~----~~G~i~~~g~~i~~~~~~~~~~~~~~~~ 80 (252)
T TIGR03005 7 TKRFGILTVLDGLNFSVAAG--EKVALIGPSGSGKSTILRILMTLEPI----DEGQIQVEGEQLYHMPGRNGPLVPADEK 80 (252)
T ss_pred EEEeCCeeEEeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CceEEEECCEEccccccccccccccchh
Confidence 56777788999999999999 99999999999999999999999873 3333332221100 0
Q ss_pred --EeeCCcEEEEEeCCCCcCCCCCchH
Q 038053 68 --VLKDGQVVNVIDTPGLFDSSAGSEF 92 (231)
Q Consensus 68 --~~~~~~~~~l~Dtpg~~~~~~~~~~ 92 (231)
........++++.+.+++..+..++
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~tv~~n 107 (252)
T TIGR03005 81 HLRQMRNKIGMVFQSFNLFPHKTVLDN 107 (252)
T ss_pred HHHHHhhCeEEEecCcccCCCCcHHHH
Confidence 0013456788888888775554433
No 194
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.21 E-value=6.1e-12 Score=100.04 Aligned_cols=85 Identities=16% Similarity=0.108 Sum_probs=58.6
Q ss_pred CCCCCC--cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-EE-----eeCCc
Q 038053 2 SSGMGE--RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-TV-----LKDGQ 73 (231)
Q Consensus 2 ~~~~~~--~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-~~-----~~~~~ 73 (231)
++.|++ +.+++++++++++| .+++|+|+||||||||+++|+|...+ ..|.++....... .. .....
T Consensus 8 ~~~~~~~~~~il~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~----~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 8 SKAYPGGHQPALDNLNFHITKG--EMVFLVGHSGAGKSTFLKLILGIEKP----TRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred EEEecCCCeeEEEeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CceEEEECCEehhhcChhHHHHHHHh
Confidence 456743 46999999999999 99999999999999999999999763 3343333221100 00 00234
Q ss_pred EEEEEeCCCCcCCCCCchH
Q 038053 74 VVNVIDTPGLFDSSAGSEF 92 (231)
Q Consensus 74 ~~~l~Dtpg~~~~~~~~~~ 92 (231)
..++++.|.+++..+..++
T Consensus 82 i~~~~q~~~~~~~~tv~e~ 100 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDN 100 (216)
T ss_pred ceEEecCccccccccHHHH
Confidence 6788888888775554443
No 195
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.21 E-value=3.5e-11 Score=90.96 Aligned_cols=55 Identities=29% Similarity=0.364 Sum_probs=42.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 83 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~ 83 (231)
..|+++|.||+|||||+|+|.|......+ ..+++|+...... .+..++++||||+
T Consensus 103 ~~v~~~G~~nvGKStliN~l~~~~~~~~~-~~~g~T~~~~~~~----~~~~~~liDtPGi 157 (157)
T cd01858 103 ISVGFIGYPNVGKSSIINTLRSKKVCKVA-PIPGETKVWQYIT----LMKRIYLIDCPGV 157 (157)
T ss_pred eEEEEEeCCCCChHHHHHHHhcCCceeeC-CCCCeeEeEEEEE----cCCCEEEEECcCC
Confidence 78999999999999999999998776554 4566666543321 2345889999995
No 196
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.21 E-value=7.6e-11 Score=89.00 Aligned_cols=140 Identities=19% Similarity=0.165 Sum_probs=78.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEee-CCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG 102 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~ 102 (231)
.+|+++|++|||||||++.+++..... ...+.+........... ....+.++||||.... .....
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----------~~~~~ 66 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVE---DYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDY-----------AAIRD 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCcc---ccCCcchhhEEEEEEECCEEEEEEEEECCChhhh-----------hHHHH
Confidence 379999999999999999999765321 11112211111111110 2345778999996531 11122
Q ss_pred hhcCCccEEEEEEECCCCCCHHHHH--------h--cCCCCcHHHHHHHHHhhH---------HHHHhhc-cchhhhhhh
Q 038053 103 LAKGGIHAVLVVFSVRSRFSQEEEA--------A--NGGQPYTDEFLAELKRGA---------TELRDQQ-AEVDSLKEY 162 (231)
Q Consensus 103 ~~~~~~~~il~vvd~~~~~~~~~~~--------~--~~~~~~~~~~~~~~~~~~---------~~l~~~~-~~i~~is~~ 162 (231)
..+..++.++++++..+.-+-.... . ....|++ .++++.|... ..+.... -+++.+|++
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-iv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 145 (164)
T cd04139 67 NYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLL-LVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAK 145 (164)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEEccccccccccCHHHHHHHHHHhCCeEEEeeCC
Confidence 2345678999999987422111111 1 1234433 3344444210 1222222 267889999
Q ss_pred hHhhHHHHHHHHHHHH
Q 038053 163 SKQEISKLMGQMQESY 178 (231)
Q Consensus 163 ~~~~i~~l~~~i~~~~ 178 (231)
++.|+++++..+...+
T Consensus 146 ~~~gi~~l~~~l~~~~ 161 (164)
T cd04139 146 TRQNVEKAFYDLVREI 161 (164)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999988876543
No 197
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.21 E-value=6.1e-12 Score=101.78 Aligned_cols=85 Identities=18% Similarity=0.037 Sum_probs=61.2
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee---------EEeeCC
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT---------TVLKDG 72 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~---------~~~~~~ 72 (231)
++.|+++.++++++|++.+| .+++|+|+||+|||||+++|+|...+ ..|.++....... ......
T Consensus 9 ~~~~~~~~il~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~----~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 82 (242)
T PRK11124 9 NCFYGAHQALFDITLDCPQG--ETLVLLGPSGAGKSSLLRVLNLLEMP----RSGTLNIAGNHFDFSKTPSDKAIRELRR 82 (242)
T ss_pred EEEECCeeeEeeeeeEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CceEEEECCEecccccccchhhHHHHHh
Confidence 56788888999999999999 99999999999999999999999873 3443433222100 000123
Q ss_pred cEEEEEeCCCCcCCCCCchH
Q 038053 73 QVVNVIDTPGLFDSSAGSEF 92 (231)
Q Consensus 73 ~~~~l~Dtpg~~~~~~~~~~ 92 (231)
..+++++.|.+++..+..++
T Consensus 83 ~i~~~~q~~~~~~~~tv~e~ 102 (242)
T PRK11124 83 NVGMVFQQYNLWPHLTVQQN 102 (242)
T ss_pred heEEEecCccccCCCcHHHH
Confidence 56788898888875554443
No 198
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.21 E-value=7.7e-11 Score=89.33 Aligned_cols=137 Identities=15% Similarity=0.168 Sum_probs=77.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
.+|+++|.+|||||||++.++..... ....+++.......... .+ ..+.+.||||..... .+.
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~---~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~--------~~~--- 66 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFV---EKYDPTIEDSYRKQVEV-DGQQCMLEILDTAGTEQFT--------AMR--- 66 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCC---cccCCcchheEEEEEEE-CCEEEEEEEEECCCcccch--------hHH---
Confidence 58999999999999999998854321 11122222111112222 32 345689999975311 111
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH----------hcCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA----------ANGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKE 161 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~ 161 (231)
...+..+|++++++|.++.-+..+.. .....|++ .+.++.|.. ...+....+ +++.+||
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 145 (164)
T cd04175 67 DLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMI-LVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSA 145 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeC
Confidence 12335679999999987433222211 11233443 233333210 012322232 6788999
Q ss_pred hhHhhHHHHHHHHHH
Q 038053 162 YSKQEISKLMGQMQE 176 (231)
Q Consensus 162 ~~~~~i~~l~~~i~~ 176 (231)
++|.|+++++..+.+
T Consensus 146 ~~~~~v~~~~~~l~~ 160 (164)
T cd04175 146 KAKINVNEIFYDLVR 160 (164)
T ss_pred CCCCCHHHHHHHHHH
Confidence 999999999888765
No 199
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.21 E-value=1.1e-11 Score=100.74 Aligned_cols=87 Identities=18% Similarity=0.081 Sum_probs=65.9
Q ss_pred CCCCCCC-----cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE------Ee
Q 038053 1 MSSGMGE-----RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT------VL 69 (231)
Q Consensus 1 ~~~~~~~-----~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~------~~ 69 (231)
+||.|.. ..++++++++|++| .++|+||++|||||||+++|.+... |+.|.+..+...... ..
T Consensus 7 vsK~~~~~~~~~~~al~~vsL~I~~G--eI~GIIG~SGAGKSTLiR~iN~Le~----PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 7 VSKTFGQTGTGTVTALDDVSLEIPKG--EIFGIIGYSGAGKSTLLRLINLLER----PTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred eeeeeccCCCCceeeeccceEEEcCC--cEEEEEcCCCCcHHHHHHHHhccCC----CCCceEEEcCEecccCChHHHHH
Confidence 3566654 57899999999999 9999999999999999999999998 555555554422111 11
Q ss_pred eCCcEEEEEeCCCCcCCCCCchHH
Q 038053 70 KDGQVVNVIDTPGLFDSSAGSEFV 93 (231)
Q Consensus 70 ~~~~~~~l~Dtpg~~~~~~~~~~~ 93 (231)
.+...+++++.+++....++.+++
T Consensus 81 ~R~~IGMIFQhFnLLssrTV~~Nv 104 (339)
T COG1135 81 LRQKIGMIFQHFNLLSSRTVFENV 104 (339)
T ss_pred HHhhccEEeccccccccchHHhhh
Confidence 145788999999998877766544
No 200
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.21 E-value=7.7e-12 Score=107.06 Aligned_cols=86 Identities=21% Similarity=0.201 Sum_probs=62.9
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEEeeCCcEEEEEeC
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTVLKDGQVVNVIDT 80 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~Dt 80 (231)
++.|++..++++++|++++| .+++|+|+||||||||+++|+|...+ ..|.+....... ..........++++.
T Consensus 10 ~~~~~~~~vl~~vsl~i~~G--e~~~l~G~nGsGKSTLL~~iaGl~~p----~~G~I~~~g~~i~~~~~~~~~i~~v~Q~ 83 (369)
T PRK11000 10 TKAYGDVVISKDINLDIHEG--EFVVFVGPSGCGKSTLLRMIAGLEDI----TSGDLFIGEKRMNDVPPAERGVGMVFQS 83 (369)
T ss_pred EEEeCCeEEEeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCC----CceEEEECCEECCCCCHhHCCEEEEeCC
Confidence 56788888999999999999 99999999999999999999999873 333333222110 000012457889999
Q ss_pred CCCcCCCCCchHH
Q 038053 81 PGLFDSSAGSEFV 93 (231)
Q Consensus 81 pg~~~~~~~~~~~ 93 (231)
+.+++..++.+++
T Consensus 84 ~~l~~~~tv~eni 96 (369)
T PRK11000 84 YALYPHLSVAENM 96 (369)
T ss_pred cccCCCCCHHHHH
Confidence 9988876665544
No 201
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.21 E-value=4.6e-12 Score=101.49 Aligned_cols=44 Identities=18% Similarity=0.160 Sum_probs=41.6
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRK 47 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~ 47 (231)
++.|+++.++++++|++.+| .+++|+|+||||||||+++|+|..
T Consensus 7 ~~~~~~~~~l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 7 NVYYGDKHALKDISLDIPKG--EITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEcCCceeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHhhc
Confidence 56788888999999999999 999999999999999999999997
No 202
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.20 E-value=2.7e-10 Score=86.19 Aligned_cols=137 Identities=20% Similarity=0.199 Sum_probs=78.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRIG 102 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~ 102 (231)
+|+++|++|||||||+|.+++..... ...+++.+........ .+ ..+.++||||..... .+. .
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~---~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~--------~~~---~ 66 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVD---DYDPTIEDSYRKQIEI-DGEVCLLDILDTAGQEEFS--------AMR---D 66 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCc---ccCCchhhhEEEEEEE-CCEEEEEEEEECCCcccch--------HHH---H
Confidence 79999999999999999999865321 1111121111111222 22 356689999965421 111 1
Q ss_pred hhcCCccEEEEEEECCCCCCHHHHH----------hcCCCCcHHHHHHHHHhhH---------HHHHhhcc-chhhhhhh
Q 038053 103 LAKGGIHAVLVVFSVRSRFSQEEEA----------ANGGQPYTDEFLAELKRGA---------TELRDQQA-EVDSLKEY 162 (231)
Q Consensus 103 ~~~~~~~~il~vvd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~---------~~l~~~~~-~i~~is~~ 162 (231)
..+..+|++++++|+++.-+..... .....|++ .+.++.+... ..+....+ +++.+|++
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 145 (164)
T smart00173 67 QYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIV-LVGNKCDLESERVVSTEEGKELARQWGCPFLETSAK 145 (164)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECccccccceEcHHHHHHHHHHcCCEEEEeecC
Confidence 2235679999999998532222211 11233443 3334443210 11222222 67889999
Q ss_pred hHhhHHHHHHHHHHH
Q 038053 163 SKQEISKLMGQMQES 177 (231)
Q Consensus 163 ~~~~i~~l~~~i~~~ 177 (231)
++.|+++++..+.+.
T Consensus 146 ~~~~i~~l~~~l~~~ 160 (164)
T smart00173 146 ERVNVDEAFYDLVRE 160 (164)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999998887653
No 203
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.20 E-value=5.8e-11 Score=109.48 Aligned_cols=138 Identities=14% Similarity=0.219 Sum_probs=89.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
.+|+|+|..|+|||||++.|.+...... ..+++|.........+ .+..+.++||||..... .....
T Consensus 291 pvV~ImGhvd~GKTSLl~~Lr~~~v~~~--e~~GIT~~iga~~v~~-~~~~ItfiDTPGhe~F~-----------~m~~r 356 (787)
T PRK05306 291 PVVTIMGHVDHGKTSLLDAIRKTNVAAG--EAGGITQHIGAYQVET-NGGKITFLDTPGHEAFT-----------AMRAR 356 (787)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcccc--ccCceeeeccEEEEEE-CCEEEEEEECCCCccch-----------hHHHh
Confidence 7999999999999999999987654321 3456666555555555 57789999999975421 11123
Q ss_pred hcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhhH-------HHHHh------hc---cchhhhhhh
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRGA-------TELRD------QQ---AEVDSLKEY 162 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-------~~l~~------~~---~~i~~is~~ 162 (231)
....+|++++|+|+.+++...... .....|++ .++|++|... ..|.. .. -+++++|++
T Consensus 357 ga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiI-VviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAk 435 (787)
T PRK05306 357 GAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPII-VAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAK 435 (787)
T ss_pred hhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEE-EEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCC
Confidence 346789999999998766554433 22234433 3445544210 12211 01 157889999
Q ss_pred hHhhHHHHHHHHHH
Q 038053 163 SKQEISKLMGQMQE 176 (231)
Q Consensus 163 ~~~~i~~l~~~i~~ 176 (231)
+|.|+..|+..+..
T Consensus 436 tG~GI~eLle~I~~ 449 (787)
T PRK05306 436 TGEGIDELLEAILL 449 (787)
T ss_pred CCCCchHHHHhhhh
Confidence 99999999887653
No 204
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.20 E-value=1.2e-11 Score=99.09 Aligned_cols=79 Identities=19% Similarity=0.133 Sum_probs=56.9
Q ss_pred CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee---EEeeCCcEEEE
Q 038053 1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT---TVLKDGQVVNV 77 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~l 77 (231)
+++.|+++.++++++|++++| .+++|+|+||||||||+++|+|...+ ..|.+........ .........++
T Consensus 13 l~~~~~~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~----~~G~i~~~g~~~~~~~~~~~~~~i~~~ 86 (225)
T PRK10247 13 VGYLAGDAKILNNISFSLRAG--EFKLITGPSGCGKSTLLKIVASLISP----TSGTLLFEGEDISTLKPEIYRQQVSYC 86 (225)
T ss_pred cEEeeCCceeeeccEEEEcCC--CEEEEECCCCCCHHHHHHHHhcccCC----CCCeEEECCEEcCcCCHHHHHhccEEE
Confidence 356788888999999999999 99999999999999999999998763 3443332221100 00012345678
Q ss_pred EeCCCCcC
Q 038053 78 IDTPGLFD 85 (231)
Q Consensus 78 ~Dtpg~~~ 85 (231)
++.|.+++
T Consensus 87 ~q~~~l~~ 94 (225)
T PRK10247 87 AQTPTLFG 94 (225)
T ss_pred eccccccc
Confidence 88888775
No 205
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.20 E-value=8.7e-11 Score=93.35 Aligned_cols=142 Identities=18% Similarity=0.139 Sum_probs=80.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeC--CcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG 102 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~ 102 (231)
+|+++|.+|||||||+|.+++..... ...+..+.+.......... ...+.+.||||... ...+. .
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~~--~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~--------~~~l~---~ 68 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFGK--SYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSI--------GGKML---D 68 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCC--CCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHH--------HHHHH---H
Confidence 68999999999999999999865311 1122222222222222212 34677999999432 11222 2
Q ss_pred hhcCCccEEEEEEECCCCCCHHHHH--------hc---CCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhh
Q 038053 103 LAKGGIHAVLVVFSVRSRFSQEEEA--------AN---GGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKE 161 (231)
Q Consensus 103 ~~~~~~~~il~vvd~~~~~~~~~~~--------~~---~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~ 161 (231)
..+..+|++++|+|+++.-+..... .. ...+.+..+.++.|.. ...+....+ +.+.+||
T Consensus 69 ~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSA 148 (215)
T cd04109 69 KYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSA 148 (215)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEEC
Confidence 2346789999999998543322221 11 1122222344444411 012222222 4667899
Q ss_pred hhHhhHHHHHHHHHHHHH
Q 038053 162 YSKQEISKLMGQMQESYE 179 (231)
Q Consensus 162 ~~~~~i~~l~~~i~~~~~ 179 (231)
++|.|+.++++.+...+.
T Consensus 149 ktg~gv~~lf~~l~~~l~ 166 (215)
T cd04109 149 KTGDRVNLLFQQLAAELL 166 (215)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999988877543
No 206
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.20 E-value=1.2e-11 Score=99.55 Aligned_cols=86 Identities=15% Similarity=0.125 Sum_probs=59.4
Q ss_pred CCCCCC----cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-EE------ee
Q 038053 2 SSGMGE----RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-TV------LK 70 (231)
Q Consensus 2 ~~~~~~----~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-~~------~~ 70 (231)
++.|+. ..+|++++|++++| .+++|+|+||||||||+++|+|... +..|.++....... .. ..
T Consensus 12 ~~~~~~~~~~~~il~~isl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~----~~~G~i~~~g~~i~~~~~~~~~~~~ 85 (233)
T PRK11629 12 CKRYQEGSVQTDVLHNVSFSIGEG--EMMAIVGSSGSGKSTLLHLLGGLDT----PTSGDVIFNGQPMSKLSSAAKAELR 85 (233)
T ss_pred EEEcCCCCcceeeEEeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhcCCC----CCceEEEECCEEcCcCCHHHHHHHH
Confidence 455643 46999999999999 9999999999999999999999976 34444443321110 00 00
Q ss_pred CCcEEEEEeCCCCcCCCCCchHH
Q 038053 71 DGQVVNVIDTPGLFDSSAGSEFV 93 (231)
Q Consensus 71 ~~~~~~l~Dtpg~~~~~~~~~~~ 93 (231)
.....++++.|.+++..+..+++
T Consensus 86 ~~~i~~v~q~~~~~~~~tv~e~l 108 (233)
T PRK11629 86 NQKLGFIYQFHHLLPDFTALENV 108 (233)
T ss_pred hccEEEEecCcccCCCCCHHHHH
Confidence 13467888888887755544443
No 207
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.20 E-value=1.3e-11 Score=98.48 Aligned_cols=85 Identities=15% Similarity=0.093 Sum_probs=58.7
Q ss_pred CCCCCC----cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEE------ee
Q 038053 2 SSGMGE----RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTV------LK 70 (231)
Q Consensus 2 ~~~~~~----~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~------~~ 70 (231)
++.|++ .+++++++|++.+| .+++|+|+||||||||+++|+|...+ ..|.+....... ... ..
T Consensus 8 ~~~~~~~~~~~~~l~~isl~i~~G--~~~~i~G~nGsGKSTLl~~i~G~~~~----~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 8 GKRYQEGKLDTRVLKGVSLSIGKG--EIVAIVGSSGSGKSTLLHLLGGLDNP----TSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred eEEccCCCcceEeEeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCC----CCcEEEECCEEhhhcCHhHHHHHH
Confidence 456653 46999999999999 99999999999999999999999873 344333222110 000 00
Q ss_pred CCcEEEEEeCCCCcCCCCCchH
Q 038053 71 DGQVVNVIDTPGLFDSSAGSEF 92 (231)
Q Consensus 71 ~~~~~~l~Dtpg~~~~~~~~~~ 92 (231)
.....++++.|.+++..+..++
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~ 103 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALEN 103 (221)
T ss_pred HhcEEEEecccccCCCCcHHHH
Confidence 1346788888888765544433
No 208
>CHL00071 tufA elongation factor Tu
Probab=99.20 E-value=6.8e-11 Score=102.67 Aligned_cols=93 Identities=16% Similarity=0.201 Sum_probs=63.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCccccc--------------cCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCC
Q 038053 23 KRTVVLLGRTGNGKSATGNSILGRKAFKAS--------------ADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSA 88 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~--------------~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~ 88 (231)
..+|+++|++++|||||+|+|++......+ ....+.|.+........ .+..+.++||||..
T Consensus 12 ~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~~~iDtPGh~---- 86 (409)
T CHL00071 12 HVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYET-ENRHYAHVDCPGHA---- 86 (409)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEcc-CCeEEEEEECCChH----
Confidence 378999999999999999999986322111 01245565543333333 56778899999943
Q ss_pred CchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH
Q 038053 89 GSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA 127 (231)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~ 127 (231)
.+...+...+..+|.+++|+|+..++...+..
T Consensus 87 -------~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~ 118 (409)
T CHL00071 87 -------DYVKNMITGAAQMDGAILVVSAADGPMPQTKE 118 (409)
T ss_pred -------HHHHHHHHHHHhCCEEEEEEECCCCCcHHHHH
Confidence 23333334456789999999998777776654
No 209
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.20 E-value=4.5e-10 Score=101.39 Aligned_cols=141 Identities=18% Similarity=0.210 Sum_probs=88.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccc-ccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKA-SADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
+|+++|++|+|||||+|+|+|...... .....++|.+........ .+..+.++|+||.. .+...+..
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~-~~~~v~~iDtPGhe-----------~f~~~~~~ 69 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPL-PDYRLGFIDVPGHE-----------KFISNAIA 69 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEe-CCEEEEEEECCCHH-----------HHHHHHHh
Confidence 699999999999999999998642110 012346666655544554 56788999999942 23333334
Q ss_pred hcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhhH--------HHHHhh--------ccchhhhhhh
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRGA--------TELRDQ--------QAEVDSLKEY 162 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~--------~~l~~~--------~~~i~~is~~ 162 (231)
....+|.+++|+|+++++...... ...+.+..+.++|++|... .++.+. ..+++++|++
T Consensus 70 g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~ 149 (581)
T TIGR00475 70 GGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAK 149 (581)
T ss_pred hhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCC
Confidence 457789999999998766554433 1223331223334433100 122221 1267889999
Q ss_pred hHhhHHHHHHHHHHH
Q 038053 163 SKQEISKLMGQMQES 177 (231)
Q Consensus 163 ~~~~i~~l~~~i~~~ 177 (231)
+|.|+++++..+...
T Consensus 150 tG~GI~eL~~~L~~l 164 (581)
T TIGR00475 150 TGQGIGELKKELKNL 164 (581)
T ss_pred CCCCchhHHHHHHHH
Confidence 999999888766543
No 210
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.20 E-value=4.8e-13 Score=102.26 Aligned_cols=86 Identities=19% Similarity=0.147 Sum_probs=65.8
Q ss_pred CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-----EEeeCCcEE
Q 038053 1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-----TVLKDGQVV 75 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-----~~~~~~~~~ 75 (231)
+.|.|+++.++++++|.+.+| ..|||+|||||||||.|++++|...+.+| .+..+..-.. ... .-..+
T Consensus 10 l~K~y~kr~Vv~~Vsl~v~~G--EiVGLLGPNGAGKTT~Fymi~Glv~~d~G----~i~ld~~diT~lPm~~RA-rlGig 82 (243)
T COG1137 10 LAKSYKKRKVVNDVSLEVNSG--EIVGLLGPNGAGKTTTFYMIVGLVRPDSG----KILLDDEDITKLPMHKRA-RLGIG 82 (243)
T ss_pred hhHhhCCeeeeeeeeEEEcCC--cEEEEECCCCCCceeEEEEEEEEEecCCc----eEEECCcccccCChHHHh-hcCcc
Confidence 468999999999999999999 99999999999999999999999885443 3322211100 001 23568
Q ss_pred EEEeCCCCcCCCCCchHH
Q 038053 76 NVIDTPGLFDSSAGSEFV 93 (231)
Q Consensus 76 ~l~Dtpg~~~~~~~~~~~ 93 (231)
|++|.|.+|...++.+++
T Consensus 83 YLpQE~SIFr~LtV~dNi 100 (243)
T COG1137 83 YLPQEASIFRKLTVEDNI 100 (243)
T ss_pred cccccchHhhcCcHHHHH
Confidence 899999999888776654
No 211
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.20 E-value=1.6e-10 Score=96.75 Aligned_cols=87 Identities=18% Similarity=0.190 Sum_probs=60.7
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEee-----------------------CCcEEEEEeCCC
Q 038053 26 VVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLK-----------------------DGQVVNVIDTPG 82 (231)
Q Consensus 26 i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-----------------------~~~~~~l~Dtpg 82 (231)
|+|||.||+|||||||+|++..... .+.+.+|.++..+..... ....+.++||||
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~--~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aG 78 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEI--ANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAG 78 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcc--cCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCC
Confidence 6899999999999999999986422 245566666555433220 224688999999
Q ss_pred CcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECC
Q 038053 83 LFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVR 118 (231)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~ 118 (231)
+.++......++..++..+ ..+|++++|+|+.
T Consensus 79 lv~ga~~~~glg~~fL~~i----r~aD~ii~Vvd~~ 110 (318)
T cd01899 79 LVPGAHEGKGLGNKFLDDL----RDADALIHVVDAS 110 (318)
T ss_pred CCCCccchhhHHHHHHHHH----HHCCEEEEEEeCC
Confidence 9765544444555554444 5669999999997
No 212
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.20 E-value=1e-10 Score=90.00 Aligned_cols=135 Identities=13% Similarity=0.097 Sum_probs=77.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
.+|+++|.+|||||||++.+...... ...+ |.......... ....+.+.||||... +......
T Consensus 14 ~ki~l~G~~~~GKTsL~~~~~~~~~~---~~~~--t~~~~~~~~~~-~~~~l~l~D~~G~~~-----------~~~~~~~ 76 (175)
T smart00177 14 MRILMVGLDAAGKTTILYKLKLGESV---TTIP--TIGFNVETVTY-KNISFTVWDVGGQDK-----------IRPLWRH 76 (175)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCC---CcCC--ccccceEEEEE-CCEEEEEEECCCChh-----------hHHHHHH
Confidence 78999999999999999999533221 1111 22222222233 567788999999654 1111223
Q ss_pred hcCCccEEEEEEECCCCCCHHH--HH----hc----CCCCcHHHHHHHHHhh----HHHHHhhcc---------chhhhh
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEE--EA----AN----GGQPYTDEFLAELKRG----ATELRDQQA---------EVDSLK 160 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~--~~----~~----~~~~~~~~~~~~~~~~----~~~l~~~~~---------~i~~is 160 (231)
.+..+|++++|+|++++-+..+ .. .. ...|++ .+.++.|.. ..++.+.+. .+..+|
T Consensus 77 ~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~pii-lv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S 155 (175)
T smart00177 77 YYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVIL-VFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTC 155 (175)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEE-EEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEee
Confidence 3578899999999985322211 11 11 112332 344443311 022322221 244689
Q ss_pred hhhHhhHHHHHHHHHH
Q 038053 161 EYSKQEISKLMGQMQE 176 (231)
Q Consensus 161 ~~~~~~i~~l~~~i~~ 176 (231)
|++|.|+.++++.+.+
T Consensus 156 a~~g~gv~e~~~~l~~ 171 (175)
T smart00177 156 ATSGDGLYEGLTWLSN 171 (175)
T ss_pred CCCCCCHHHHHHHHHH
Confidence 9999999999887655
No 213
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.20 E-value=1.9e-11 Score=96.34 Aligned_cols=68 Identities=22% Similarity=0.256 Sum_probs=53.7
Q ss_pred CCCCCCc-----ccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEE
Q 038053 2 SSGMGER-----VIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVN 76 (231)
Q Consensus 2 ~~~~~~~-----~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 76 (231)
+++|+.. .++++++|++++| .+++|+|+||+|||||+++|+|... +..|.+.. .+...+
T Consensus 7 ~~~~~~~~~~~~~il~~~s~~i~~G--~~~~i~G~nG~GKSTLl~~i~G~~~----~~~G~i~~----------~g~i~~ 70 (204)
T cd03250 7 SFTWDSGEQETSFTLKDINLEVPKG--ELVAIVGPVGSGKSSLLSALLGELE----KLSGSVSV----------PGSIAY 70 (204)
T ss_pred EEecCCCCccccceeeeeeEEECCC--CEEEEECCCCCCHHHHHHHHhCcCC----CCCCeEEE----------cCEEEE
Confidence 4567653 7999999999999 9999999999999999999999977 34443332 335667
Q ss_pred EEeCCCCcC
Q 038053 77 VIDTPGLFD 85 (231)
Q Consensus 77 l~Dtpg~~~ 85 (231)
+++.|.+++
T Consensus 71 ~~q~~~l~~ 79 (204)
T cd03250 71 VSQEPWIQN 79 (204)
T ss_pred EecCchhcc
Confidence 788877664
No 214
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.20 E-value=1.5e-11 Score=98.62 Aligned_cols=85 Identities=20% Similarity=0.153 Sum_probs=58.2
Q ss_pred CCCCCC----cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-EE------ee
Q 038053 2 SSGMGE----RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-TV------LK 70 (231)
Q Consensus 2 ~~~~~~----~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-~~------~~ 70 (231)
++.|+. ..++++++|++.+| .+++|+|+||+|||||+++|+|...+ ..|.+........ .. ..
T Consensus 13 ~~~~~~~~~~~~~l~~~s~~i~~G--e~~~i~G~nGsGKSTLl~~i~Gl~~p----~~G~i~~~g~~~~~~~~~~~~~~~ 86 (228)
T PRK10584 13 KKSVGQGEHELSILTGVELVVKRG--ETIALIGESGSGKSTLLAILAGLDDG----SSGEVSLVGQPLHQMDEEARAKLR 86 (228)
T ss_pred EEEccCCCcceEEEeccEEEEcCC--CEEEEECCCCCCHHHHHHHHHcCCCC----CCeeEEECCEEcccCCHHHHHHHH
Confidence 456654 35999999999999 99999999999999999999999873 3443332221100 00 00
Q ss_pred CCcEEEEEeCCCCcCCCCCchH
Q 038053 71 DGQVVNVIDTPGLFDSSAGSEF 92 (231)
Q Consensus 71 ~~~~~~l~Dtpg~~~~~~~~~~ 92 (231)
.....++++.|.+++..+..++
T Consensus 87 ~~~i~~~~q~~~l~~~~tv~~~ 108 (228)
T PRK10584 87 AKHVGFVFQSFMLIPTLNALEN 108 (228)
T ss_pred hheEEEEEcccccCCCcCHHHH
Confidence 1346778888888775444333
No 215
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.20 E-value=1.3e-11 Score=99.94 Aligned_cols=83 Identities=13% Similarity=0.128 Sum_probs=57.7
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCC--ccccccCCCCcceeeeeeeE----EeeCCcEE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRK--AFKASADSSGVTKTCEMKTT----VLKDGQVV 75 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~--~~~~~~~~~~~t~~~~~~~~----~~~~~~~~ 75 (231)
++.|+++.+|++++|++++| .+++|+|+||||||||+++|+|.. . +..|.+......... ........
T Consensus 7 ~~~~~~~~~l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~----~~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (243)
T TIGR01978 7 HVSVEDKEILKGVNLTVKKG--EIHAIMGPNGSGKSTLSKTIAGHPSYE----VTSGTILFKGQDLLELEPDERARAGLF 80 (243)
T ss_pred EEEECCEEEEeccceEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCC----CCcceEEECCEecCCCCHHHhhccceE
Confidence 56788888999999999999 999999999999999999999984 3 233333332211000 00012256
Q ss_pred EEEeCCCCcCCCCCc
Q 038053 76 NVIDTPGLFDSSAGS 90 (231)
Q Consensus 76 ~l~Dtpg~~~~~~~~ 90 (231)
++++.|.+++..+..
T Consensus 81 ~v~q~~~~~~~~t~~ 95 (243)
T TIGR01978 81 LAFQYPEEIPGVSNL 95 (243)
T ss_pred eeeccccccCCcCHH
Confidence 778888887655433
No 216
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.20 E-value=1.3e-11 Score=99.57 Aligned_cols=84 Identities=19% Similarity=0.080 Sum_probs=58.8
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEE-eeCCcEEEEEe
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTV-LKDGQVVNVID 79 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~-~~~~~~~~l~D 79 (231)
++.|+++.+++++++++.+| .+++|+|+||||||||+++|+|...+ ..|.+....... ... .......++++
T Consensus 8 ~~~~~~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~p----~~G~i~~~g~~i~~~~~~~~~~i~~~~q 81 (236)
T TIGR03864 8 SFAYGARRALDDVSFTVRPG--EFVALLGPNGAGKSTLFSLLTRLYVA----QEGQISVAGHDLRRAPRAALARLGVVFQ 81 (236)
T ss_pred EEEECCEEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCcCC----CceEEEECCEEcccCChhhhhhEEEeCC
Confidence 55677788999999999999 99999999999999999999999873 333333222110 000 00134677888
Q ss_pred CCCCcCCCCCch
Q 038053 80 TPGLFDSSAGSE 91 (231)
Q Consensus 80 tpg~~~~~~~~~ 91 (231)
.|.+++..+..+
T Consensus 82 ~~~~~~~~t~~~ 93 (236)
T TIGR03864 82 QPTLDLDLSVRQ 93 (236)
T ss_pred CCCCcccCcHHH
Confidence 887766544433
No 217
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.19 E-value=1.4e-11 Score=100.70 Aligned_cols=82 Identities=21% Similarity=0.123 Sum_probs=57.6
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eE--EeeCCcEEEEE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TT--VLKDGQVVNVI 78 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~--~~~~~~~~~l~ 78 (231)
++.|+++.+|++++|++.+| .+++|+|+||||||||+++|+|...+ ..|.+....... .. ........+++
T Consensus 9 ~~~~~~~~il~~is~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~p----~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 82 (258)
T PRK13548 9 SVRLGGRTLLDDVSLTLRPG--EVVAILGPNGAGKSTLLRALSGELSP----DSGEVRLNGRPLADWSPAELARRRAVLP 82 (258)
T ss_pred EEEeCCeeeeeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CCCEEEECCEEcccCCHHHhhhheEEEc
Confidence 56788888999999999999 99999999999999999999999763 344333322110 00 00023456778
Q ss_pred eCCCCcCCCCC
Q 038053 79 DTPGLFDSSAG 89 (231)
Q Consensus 79 Dtpg~~~~~~~ 89 (231)
+.+.+++..+.
T Consensus 83 q~~~~~~~~tv 93 (258)
T PRK13548 83 QHSSLSFPFTV 93 (258)
T ss_pred cCCcCCCCCCH
Confidence 87776554443
No 218
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.19 E-value=7.8e-11 Score=88.66 Aligned_cols=138 Identities=14% Similarity=0.091 Sum_probs=76.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEee-CCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
+|+++|++|+|||||+|.+++...... ..+.++........... ....+.++|+||.... ... ...
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~~---~~~ 68 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEK--HESTTQASFFQKTVNIGGKRIDLAIWDTAGQERY--------HAL---GPI 68 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCC--cCCccceeEEEEEEEECCEEEEEEEEECCchHHH--------HHh---hHH
Confidence 699999999999999999998765221 11122111111122221 1235778999994321 111 112
Q ss_pred hcCCccEEEEEEECCCCCCHHHHH--------h-cCCCCcHHHHHHHHHhhH------H---HHHhhc-cchhhhhhhhH
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEEEA--------A-NGGQPYTDEFLAELKRGA------T---ELRDQQ-AEVDSLKEYSK 164 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~------~---~l~~~~-~~i~~is~~~~ 164 (231)
.+..+|++++|+|+++.-+..... . ....|.+ .++++.+... . .+.... .+++.+|+.++
T Consensus 69 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 147 (162)
T cd04123 69 YYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLV-IVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTG 147 (162)
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEE-EEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCC
Confidence 236789999999997533222211 1 1122332 2333333110 1 121212 25677899999
Q ss_pred hhHHHHHHHHHH
Q 038053 165 QEISKLMGQMQE 176 (231)
Q Consensus 165 ~~i~~l~~~i~~ 176 (231)
.|+.+++..+..
T Consensus 148 ~gi~~~~~~l~~ 159 (162)
T cd04123 148 KGIEELFLSLAK 159 (162)
T ss_pred CCHHHHHHHHHH
Confidence 999999888755
No 219
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.19 E-value=9.6e-12 Score=101.36 Aligned_cols=85 Identities=16% Similarity=0.120 Sum_probs=59.8
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE----EeeCCcEEEE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT----VLKDGQVVNV 77 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~l 77 (231)
++.|++.+++++++|++.+| ..++|+|+||||||||+++|+|...+ ..|.+......... .......+++
T Consensus 12 ~~~~~~~~~l~~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~----~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 85 (255)
T PRK11300 12 MMRFGGLLAVNNVNLEVREQ--EIVSLIGPNGAGKTTVFNCLTGFYKP----TGGTILLRGQHIEGLPGHQIARMGVVRT 85 (255)
T ss_pred EEEECCEEEEEeeeeEEcCC--eEEEEECCCCCCHHHHHHHHhCCcCC----CcceEEECCEECCCCCHHHHHhcCeEEe
Confidence 56778888999999999999 99999999999999999999999873 34433332211000 0002235567
Q ss_pred EeCCCCcCCCCCchH
Q 038053 78 IDTPGLFDSSAGSEF 92 (231)
Q Consensus 78 ~Dtpg~~~~~~~~~~ 92 (231)
++.|.+++..+..++
T Consensus 86 ~q~~~~~~~~tv~en 100 (255)
T PRK11300 86 FQHVRLFREMTVIEN 100 (255)
T ss_pred ccCcccCCCCcHHHH
Confidence 888888875554433
No 220
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.19 E-value=1.7e-10 Score=87.14 Aligned_cols=138 Identities=18% Similarity=0.146 Sum_probs=77.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEe---eCCcEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVL---KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
+|+++|.+|+|||||+|.+++...... ..+....+........ .....+.+.||||... +....
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-----------~~~~~ 68 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTKD--YKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEE-----------FDAIT 68 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCC--CCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHH-----------HHHhH
Confidence 699999999999999999998654211 1122212111111111 1235678999999432 11112
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH--------hcCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhhhh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------ANGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKEYS 163 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~~~ 163 (231)
...+..+|++++|+|+++.-+..... .....|.+ .+.++.|.. ...+....+ +++.+|+++
T Consensus 69 ~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~i-iv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 147 (162)
T cd04106 69 KAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMV-LVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKD 147 (162)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEE-EEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCC
Confidence 33456889999999997432222211 11233433 333443311 012222222 677899999
Q ss_pred HhhHHHHHHHHHH
Q 038053 164 KQEISKLMGQMQE 176 (231)
Q Consensus 164 ~~~i~~l~~~i~~ 176 (231)
+.|+++++..+..
T Consensus 148 ~~~v~~l~~~l~~ 160 (162)
T cd04106 148 DFNVTELFEYLAE 160 (162)
T ss_pred CCCHHHHHHHHHH
Confidence 9999998877654
No 221
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.19 E-value=4.2e-11 Score=93.52 Aligned_cols=87 Identities=13% Similarity=0.057 Sum_probs=58.1
Q ss_pred CCCCCC----cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEE
Q 038053 2 SSGMGE----RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNV 77 (231)
Q Consensus 2 ~~~~~~----~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l 77 (231)
++.|+. +++++++++++.+| .+++|+|+||+|||||+++|+|..... +..|.+..+........ .....++
T Consensus 10 ~~~~~~~~~~~~~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~~--~~~G~i~~~g~~~~~~~-~~~i~~~ 84 (192)
T cd03232 10 NYTVPVKGGKRQLLNNISGYVKPG--TLTALMGESGAGKTTLLDVLAGRKTAG--VITGEILINGRPLDKNF-QRSTGYV 84 (192)
T ss_pred EEEecCCCCceEeEEccEEEEeCC--cEEEEECCCCCCHHHHHHHHhCCCcCC--CcceEEEECCEehHHHh-hhceEEe
Confidence 345643 67999999999999 999999999999999999999974210 22333332211100111 3456778
Q ss_pred EeCCCCcCCCCCchHH
Q 038053 78 IDTPGLFDSSAGSEFV 93 (231)
Q Consensus 78 ~Dtpg~~~~~~~~~~~ 93 (231)
.+.|.+++..+..+++
T Consensus 85 ~q~~~~~~~~tv~~~l 100 (192)
T cd03232 85 EQQDVHSPNLTVREAL 100 (192)
T ss_pred cccCccccCCcHHHHH
Confidence 8888887765555543
No 222
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.19 E-value=7.9e-11 Score=107.77 Aligned_cols=139 Identities=13% Similarity=0.206 Sum_probs=87.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEee---CCcEEEEEeCCCCcCCCCCchHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLK---DGQVVNVIDTPGLFDSSAGSEFVGKEIVKR 100 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~ 100 (231)
++|+|+|++|+|||||+++|.+...... ..++.|.........+. .+..+.++||||... +...
T Consensus 245 p~V~IvGhvdvGKTSLld~L~~~~~~~~--e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~-----------F~~m 311 (742)
T CHL00189 245 PIVTILGHVDHGKTTLLDKIRKTQIAQK--EAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEA-----------FSSM 311 (742)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCccc--cCCccccccceEEEEEEecCCceEEEEEECCcHHH-----------HHHH
Confidence 7999999999999999999998765321 23455544333333331 247889999999542 2222
Q ss_pred HhhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhhH-------HHHHhh------c---cchhhh
Q 038053 101 IGLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRGA-------TELRDQ------Q---AEVDSL 159 (231)
Q Consensus 101 ~~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-------~~l~~~------~---~~i~~i 159 (231)
....+..+|++++|+|+.+++...... .....|++ .+++++|... ..|... . -+++++
T Consensus 312 r~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiI-VViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~V 390 (742)
T CHL00189 312 RSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPII-VAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPI 390 (742)
T ss_pred HHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEE-EEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEE
Confidence 233446789999999998765544332 22233433 3344444211 122111 1 267889
Q ss_pred hhhhHhhHHHHHHHHHH
Q 038053 160 KEYSKQEISKLMGQMQE 176 (231)
Q Consensus 160 s~~~~~~i~~l~~~i~~ 176 (231)
||.+|.|+.+|+..+..
T Consensus 391 SAktG~GIdeLle~I~~ 407 (742)
T CHL00189 391 SASQGTNIDKLLETILL 407 (742)
T ss_pred ECCCCCCHHHHHHhhhh
Confidence 99999999999887765
No 223
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.19 E-value=2.1e-10 Score=89.99 Aligned_cols=95 Identities=18% Similarity=0.208 Sum_probs=55.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCccccccC-CCC--cceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHH
Q 038053 23 KRTVVLLGRTGNGKSATGNSILGRKAFKASAD-SSG--VTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVK 99 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~-~~~--~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~ 99 (231)
+.+|+++|++|+|||||+|+|+|...+..+.. .+. +|.... .........+.++||||+...... ..++..
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~l~l~DtpG~~~~~~~----~~~~l~ 74 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRT--PYPHPKFPNVTLWDLPGIGSTAFP----PDDYLE 74 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCce--eeecCCCCCceEEeCCCCCcccCC----HHHHHH
Confidence 36899999999999999999999754322111 111 122111 111112346789999998753221 122222
Q ss_pred HHhhhcCCccEEEEEEECCCCCCHHHHH
Q 038053 100 RIGLAKGGIHAVLVVFSVRSRFSQEEEA 127 (231)
Q Consensus 100 ~~~~~~~~~~~il~vvd~~~~~~~~~~~ 127 (231)
.. .+..+|.++++.+ ++++..+..
T Consensus 75 ~~--~~~~~d~~l~v~~--~~~~~~d~~ 98 (197)
T cd04104 75 EM--KFSEYDFFIIISS--TRFSSNDVK 98 (197)
T ss_pred Hh--CccCcCEEEEEeC--CCCCHHHHH
Confidence 21 2457788888754 356766644
No 224
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.19 E-value=1.5e-11 Score=106.92 Aligned_cols=86 Identities=19% Similarity=0.125 Sum_probs=64.9
Q ss_pred CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEe----eCCcEEE
Q 038053 1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVL----KDGQVVN 76 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~~ 76 (231)
++|+|++..+|++++|++.+| .+.+|+|.||||||||++.|+|... ++.|.+..+........ ......+
T Consensus 14 i~K~FggV~AL~~v~l~v~~G--EV~aL~GeNGAGKSTLmKiLsGv~~----p~~G~I~~~G~~~~~~sp~~A~~~GI~~ 87 (500)
T COG1129 14 ISKSFGGVKALDGVSLTVRPG--EVHALLGENGAGKSTLMKILSGVYP----PDSGEILIDGKPVAFSSPRDALAAGIAT 87 (500)
T ss_pred ceEEcCCceeeccceeEEeCc--eEEEEecCCCCCHHHHHHHHhCccc----CCCceEEECCEEccCCCHHHHHhCCcEE
Confidence 579999999999999999999 9999999999999999999999998 45555554433322111 1234566
Q ss_pred EEeCCCCcCCCCCchH
Q 038053 77 VIDTPGLFDSSAGSEF 92 (231)
Q Consensus 77 l~Dtpg~~~~~~~~~~ 92 (231)
+.|.+.+.+..++.++
T Consensus 88 V~QEl~L~p~LsVaeN 103 (500)
T COG1129 88 VHQELSLVPNLSVAEN 103 (500)
T ss_pred EeechhccCCccHHHH
Confidence 7777777776655544
No 225
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.19 E-value=2.5e-11 Score=99.07 Aligned_cols=85 Identities=15% Similarity=0.105 Sum_probs=60.3
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeee-------ee--EEeeCC
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEM-------KT--TVLKDG 72 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~-------~~--~~~~~~ 72 (231)
+++|+++.++++++|++.+| .+++|+|+||+|||||+++|+|...+.. |.++..... .. ......
T Consensus 17 ~~~~~~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~iaG~~~~~~----G~v~~~G~~~~~g~~~~~~~~~~~~~ 90 (257)
T PRK14246 17 YLYINDKAILKDITIKIPNN--SIFGIMGPSGSGKSTLLKVLNRLIEIYD----SKIKVDGKVLYFGKDIFQIDAIKLRK 90 (257)
T ss_pred EEecCCceeEeceEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCc----CceeEcCEEEECCcccccCCHHHHhc
Confidence 57889999999999999999 9999999999999999999999987433 222211110 00 000134
Q ss_pred cEEEEEeCCCCcCCCCCchH
Q 038053 73 QVVNVIDTPGLFDSSAGSEF 92 (231)
Q Consensus 73 ~~~~l~Dtpg~~~~~~~~~~ 92 (231)
...++++.|.+++..+..++
T Consensus 91 ~i~~~~q~~~~~~~~tv~~n 110 (257)
T PRK14246 91 EVGMVFQQPNPFPHLSIYDN 110 (257)
T ss_pred ceEEEccCCccCCCCcHHHH
Confidence 56788898888765554433
No 226
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.19 E-value=1.3e-11 Score=100.66 Aligned_cols=86 Identities=15% Similarity=0.121 Sum_probs=61.7
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE--------------
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT-------------- 67 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~-------------- 67 (231)
++.|+++.++++++|++.+| .+++|+|+||+|||||+++|+|...+ ..|.++........
T Consensus 12 ~~~~~~~~~l~~is~~i~~G--e~~~l~G~nGsGKSTLl~~i~G~~~~----~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 85 (257)
T PRK10619 12 HKRYGEHEVLKGVSLQANAG--DVISIIGSSGSGKSTFLRCINFLEKP----SEGSIVVNGQTINLVRDKDGQLKVADKN 85 (257)
T ss_pred EEEECCEEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CCeEEEECCEEcccccccccccccccch
Confidence 56778888999999999999 99999999999999999999999873 33333332211000
Q ss_pred --EeeCCcEEEEEeCCCCcCCCCCchHH
Q 038053 68 --VLKDGQVVNVIDTPGLFDSSAGSEFV 93 (231)
Q Consensus 68 --~~~~~~~~~l~Dtpg~~~~~~~~~~~ 93 (231)
........++++.|.+++..+..+++
T Consensus 86 ~~~~~~~~i~~v~q~~~l~~~~sv~enl 113 (257)
T PRK10619 86 QLRLLRTRLTMVFQHFNLWSHMTVLENV 113 (257)
T ss_pred HHHHHhhceEEEecCcccCCCCcHHHHH
Confidence 00124568889988887765554443
No 227
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.19 E-value=1.1e-11 Score=100.58 Aligned_cols=88 Identities=18% Similarity=0.080 Sum_probs=59.9
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccc-cccCCCCcceeeeeee-----EEeeCCcEE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFK-ASADSSGVTKTCEMKT-----TVLKDGQVV 75 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~-~~~~~~~~t~~~~~~~-----~~~~~~~~~ 75 (231)
++.|++..++++++|++++| .+++|+|+||||||||+++|+|...+. .....|.++....... .........
T Consensus 8 ~~~~~~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 85 (247)
T TIGR00972 8 NLFYGEKEALKNINLDIPKN--QVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVG 85 (247)
T ss_pred EEEECCeeeecceeEEECCC--CEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheE
Confidence 56788788999999999999 999999999999999999999998632 0000333333221110 001124567
Q ss_pred EEEeCCCCcCCCCCchH
Q 038053 76 NVIDTPGLFDSSAGSEF 92 (231)
Q Consensus 76 ~l~Dtpg~~~~~~~~~~ 92 (231)
++++.|.+++ .+..++
T Consensus 86 ~v~q~~~~~~-~tv~e~ 101 (247)
T TIGR00972 86 MVFQKPNPFP-MSIYDN 101 (247)
T ss_pred EEecCcccCC-CCHHHH
Confidence 8888888776 444433
No 228
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.19 E-value=1.3e-10 Score=90.53 Aligned_cols=140 Identities=14% Similarity=0.126 Sum_probs=79.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRIG 102 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~ 102 (231)
+|+++|.+|||||||++.+++...... ...+............. .+ ..+.|+||||... +.....
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~-~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~-----------~~~~~~ 68 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNG-NFIATVGIDFRNKVVTV-DGVKVKLQIWDTAGQER-----------FRSVTH 68 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcc-CcCCcccceeEEEEEEE-CCEEEEEEEEeCCCcHH-----------HHHhhH
Confidence 699999999999999999988754211 01111111111111111 22 3567899999432 111122
Q ss_pred hhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhhhh
Q 038053 103 LAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKEYS 163 (231)
Q Consensus 103 ~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~~~ 163 (231)
..+..+|++++|+|+++.-+..... .....|++ .+.++.|.. ...+..... +++.+|+.+
T Consensus 69 ~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~pii-iv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~ 147 (191)
T cd04112 69 AYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIM-LLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKT 147 (191)
T ss_pred HHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEE-EEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCC
Confidence 3346789999999998543222111 11223333 233443311 012322222 678899999
Q ss_pred HhhHHHHHHHHHHHH
Q 038053 164 KQEISKLMGQMQESY 178 (231)
Q Consensus 164 ~~~i~~l~~~i~~~~ 178 (231)
|.|+.+++..+.+..
T Consensus 148 ~~~v~~l~~~l~~~~ 162 (191)
T cd04112 148 GLNVELAFTAVAKEL 162 (191)
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999998887654
No 229
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.19 E-value=2.4e-11 Score=109.51 Aligned_cols=79 Identities=19% Similarity=0.100 Sum_probs=60.8
Q ss_pred CCCCCC-CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEe
Q 038053 1 MSSGMG-ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVID 79 (231)
Q Consensus 1 ~~~~~~-~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~D 79 (231)
+++.|+ ++++|++++|++++| .+++|+|+||||||||+++|+|... +..|.+.... .....++++
T Consensus 10 ls~~~~~~~~il~~is~~i~~G--e~~~liG~NGsGKSTLl~~i~G~~~----p~~G~i~~~~--------~~~i~~v~Q 75 (552)
T TIGR03719 10 VSKVVPPKKEILKDISLSFFPG--AKIGVLGLNGAGKSTLLRIMAGVDK----EFNGEARPAP--------GIKVGYLPQ 75 (552)
T ss_pred EEEecCCCCeeecCceEEECCC--CEEEEECCCCCCHHHHHHHHhCCCC----CCCceEEecC--------CCEEEEEec
Confidence 356787 778999999999999 9999999999999999999999987 3344333211 234678899
Q ss_pred CCCCcCCCCCchHH
Q 038053 80 TPGLFDSSAGSEFV 93 (231)
Q Consensus 80 tpg~~~~~~~~~~~ 93 (231)
.|.+++..++.+.+
T Consensus 76 ~~~~~~~~tv~e~i 89 (552)
T TIGR03719 76 EPQLDPTKTVRENV 89 (552)
T ss_pred cCCCCCCCcHHHHH
Confidence 98887765555544
No 230
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.19 E-value=9.9e-11 Score=89.32 Aligned_cols=45 Identities=22% Similarity=0.242 Sum_probs=40.6
Q ss_pred CCCCC-CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 2 SSGMG-ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 2 ~~~~~-~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
++.|+ ++.+++++++++.+| .+++|+|+||||||||+++|+|...
T Consensus 7 ~~~~~~~~~~l~~i~l~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 7 SLATPDGRVLLKDLSFEIKPG--DRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred EEEcCCCCeeeecCeEEECCC--CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45664 467999999999999 9999999999999999999999987
No 231
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.18 E-value=7.2e-11 Score=89.33 Aligned_cols=133 Identities=14% Similarity=0.093 Sum_probs=75.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhh
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLA 104 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~ 104 (231)
+|+++|.+|||||||++.+....... ..+ |.......... ....+.+.||||... +.......
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~~---~~p--t~g~~~~~~~~-~~~~~~l~D~~G~~~-----------~~~~~~~~ 64 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIVT---TIP--TIGFNVETVEY-KNISFTVWDVGGQDK-----------IRPLWRHY 64 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc---cCC--CCCcceEEEEE-CCEEEEEEECCCCHh-----------HHHHHHHH
Confidence 69999999999999999996443211 111 21112222222 567789999999743 11112234
Q ss_pred cCCccEEEEEEECCCCC--CHHHHH----hc----CCCCcHHHHHHHHHhh----HHHHHhhcc---------chhhhhh
Q 038053 105 KGGIHAVLVVFSVRSRF--SQEEEA----AN----GGQPYTDEFLAELKRG----ATELRDQQA---------EVDSLKE 161 (231)
Q Consensus 105 ~~~~~~il~vvd~~~~~--~~~~~~----~~----~~~~~~~~~~~~~~~~----~~~l~~~~~---------~i~~is~ 161 (231)
+..+|++++|+|.++.- ...... .. ...|++ .+.++.|.. ..++...+. .+..+||
T Consensus 65 ~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~pii-lv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa 143 (159)
T cd04150 65 FQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLL-VFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCA 143 (159)
T ss_pred hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEE-EEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeC
Confidence 57889999999998432 211111 01 123333 333443311 012211111 3456899
Q ss_pred hhHhhHHHHHHHHH
Q 038053 162 YSKQEISKLMGQMQ 175 (231)
Q Consensus 162 ~~~~~i~~l~~~i~ 175 (231)
++|.|++++++.+.
T Consensus 144 k~g~gv~~~~~~l~ 157 (159)
T cd04150 144 TSGDGLYEGLDWLS 157 (159)
T ss_pred CCCCCHHHHHHHHh
Confidence 99999999887664
No 232
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.18 E-value=1.8e-10 Score=88.70 Aligned_cols=139 Identities=18% Similarity=0.156 Sum_probs=79.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
.+|+|+|.+|+|||||++.+++..... ...+++.......... .+ ..+.++||||.... ....
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~---~~~~t~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~-----------~~~~ 66 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVE---SYYPTIENTFSKIIRY-KGQDYHLEIVDTAGQDEY-----------SILP 66 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcc---ccCcchhhhEEEEEEE-CCEEEEEEEEECCChHhh-----------HHHH
Confidence 589999999999999999999775321 1111111111111222 22 34678999996531 1111
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH----------hcCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA----------ANGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKE 161 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~ 161 (231)
...+..++.+++++|.++..+..... .....|.+ .+.++.|.. ...+..... +++.+|+
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 145 (180)
T cd04137 67 QKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIV-LVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSA 145 (180)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeC
Confidence 22345678999999988533222211 11223333 334443311 012222222 6778899
Q ss_pred hhHhhHHHHHHHHHHHH
Q 038053 162 YSKQEISKLMGQMQESY 178 (231)
Q Consensus 162 ~~~~~i~~l~~~i~~~~ 178 (231)
+++.|+.+++..+...+
T Consensus 146 ~~~~gv~~l~~~l~~~~ 162 (180)
T cd04137 146 RENENVEEAFELLIEEI 162 (180)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999998887654
No 233
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.18 E-value=2.3e-11 Score=109.69 Aligned_cols=79 Identities=19% Similarity=0.093 Sum_probs=60.9
Q ss_pred CCCCCC-CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEe
Q 038053 1 MSSGMG-ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVID 79 (231)
Q Consensus 1 ~~~~~~-~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~D 79 (231)
+++.|+ ++.+|++++|++++| .+++|+|+||||||||+++|+|... +..|.+.... .....++++
T Consensus 12 l~~~y~~~~~il~~vs~~i~~G--e~~~iiG~NGsGKSTLlk~i~G~~~----p~~G~i~~~~--------~~~i~~v~Q 77 (556)
T PRK11819 12 VSKVVPPKKQILKDISLSFFPG--AKIGVLGLNGAGKSTLLRIMAGVDK----EFEGEARPAP--------GIKVGYLPQ 77 (556)
T ss_pred EEEEeCCCCeeeeCceEEECCC--CEEEEECCCCCCHHHHHHHHhCCCC----CCCceEEecC--------CCEEEEEec
Confidence 356787 788999999999999 9999999999999999999999987 3334333211 234667888
Q ss_pred CCCCcCCCCCchHH
Q 038053 80 TPGLFDSSAGSEFV 93 (231)
Q Consensus 80 tpg~~~~~~~~~~~ 93 (231)
.|.+++..++.+.+
T Consensus 78 ~~~~~~~~tv~e~l 91 (556)
T PRK11819 78 EPQLDPEKTVRENV 91 (556)
T ss_pred CCCCCCCCcHHHHH
Confidence 88887765655554
No 234
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.18 E-value=1e-10 Score=91.09 Aligned_cols=138 Identities=17% Similarity=0.196 Sum_probs=77.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCc--EEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAGSEFVGKEIVKRIG 102 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~ 102 (231)
+|+++|.+|||||||++.+++..... ...+++.......... .+. .+.+.||||..... .+ ..
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~---~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~--------~~---~~ 65 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVE---TYDPTIEDSYRKQVVV-DGQPCMLEVLDTAGQEEYT--------AL---RD 65 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCc---cCCCchHhhEEEEEEE-CCEEEEEEEEECCCchhhH--------HH---HH
Confidence 48999999999999999998654311 1111111111111222 333 46789999954311 11 12
Q ss_pred hhcCCccEEEEEEECCCCCCHHHHH--------h----cCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhh
Q 038053 103 LAKGGIHAVLVVFSVRSRFSQEEEA--------A----NGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLK 160 (231)
Q Consensus 103 ~~~~~~~~il~vvd~~~~~~~~~~~--------~----~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is 160 (231)
..+..+|++++|+|+++.-+..... . ....|++ .+.++.|.. ...+....+ +.+.+|
T Consensus 66 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~pii-lvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 144 (190)
T cd04144 66 QWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIM-IVGNKCDKVYEREVSTEEGAALARRLGCEFIEAS 144 (190)
T ss_pred HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEE-EEEEChhccccCccCHHHHHHHHHHhCCEEEEec
Confidence 2346779999999998543322211 1 1223433 233443321 012222222 567899
Q ss_pred hhhHhhHHHHHHHHHHHH
Q 038053 161 EYSKQEISKLMGQMQESY 178 (231)
Q Consensus 161 ~~~~~~i~~l~~~i~~~~ 178 (231)
|++|.|+.+++..+.+..
T Consensus 145 Ak~~~~v~~l~~~l~~~l 162 (190)
T cd04144 145 AKTNVNVERAFYTLVRAL 162 (190)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999888876643
No 235
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.18 E-value=9.8e-12 Score=106.39 Aligned_cols=87 Identities=22% Similarity=0.211 Sum_probs=64.9
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-EEeeCCcEEEEEeC
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-TVLKDGQVVNVIDT 80 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~Dt 80 (231)
++.|++..++++++|++.+| .+++|+|+||||||||+++|+|...+ ..|.+..+..... .........++++.
T Consensus 21 ~~~~~~~~~l~~vsl~i~~G--e~~~LlGpsGsGKSTLLr~IaGl~~p----~~G~I~~~g~~i~~~~~~~r~ig~vfQ~ 94 (375)
T PRK09452 21 SKSFDGKEVISNLDLTINNG--EFLTLLGPSGCGKTTVLRLIAGFETP----DSGRIMLDGQDITHVPAENRHVNTVFQS 94 (375)
T ss_pred EEEECCeEEEeeeEEEEeCC--CEEEEECCCCCcHHHHHHHHhCCCCC----CceEEEECCEECCCCCHHHCCEEEEecC
Confidence 56788888999999999999 99999999999999999999999874 3343333221110 00113457889999
Q ss_pred CCCcCCCCCchHHH
Q 038053 81 PGLFDSSAGSEFVG 94 (231)
Q Consensus 81 pg~~~~~~~~~~~~ 94 (231)
+.++++.++.+++.
T Consensus 95 ~~lfp~ltv~eNi~ 108 (375)
T PRK09452 95 YALFPHMTVFENVA 108 (375)
T ss_pred cccCCCCCHHHHHH
Confidence 99998877766653
No 236
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.18 E-value=1.4e-10 Score=89.82 Aligned_cols=137 Identities=9% Similarity=0.050 Sum_probs=79.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
.+|+++|++|+|||||++.+........ . .|.......... .+..+.+.||||... +......
T Consensus 18 ~kv~lvG~~~vGKTsli~~~~~~~~~~~---~--~T~~~~~~~~~~-~~~~~~l~D~~G~~~-----------~~~~~~~ 80 (182)
T PTZ00133 18 VRILMVGLDAAGKTTILYKLKLGEVVTT---I--PTIGFNVETVEY-KNLKFTMWDVGGQDK-----------LRPLWRH 80 (182)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcccc---C--CccccceEEEEE-CCEEEEEEECCCCHh-----------HHHHHHH
Confidence 7899999999999999999964432111 1 122222222333 567788999999643 1111223
Q ss_pred hcCCccEEEEEEECCCCCCHHHHH------hc----CCCCcHHHHHHHHHhhH----HHHHhhcc---------chhhhh
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEEEA------AN----GGQPYTDEFLAELKRGA----TELRDQQA---------EVDSLK 160 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~----~~l~~~~~---------~i~~is 160 (231)
.+..+|++++|+|+++.-+..+.. .. ...|++ .+.++.|... ..+...+. .+..+|
T Consensus 81 ~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~pii-lv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~S 159 (182)
T PTZ00133 81 YYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLL-VFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCC 159 (182)
T ss_pred HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEE-EEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeee
Confidence 357889999999998432111111 11 123333 3445544210 12222211 234579
Q ss_pred hhhHhhHHHHHHHHHHHH
Q 038053 161 EYSKQEISKLMGQMQESY 178 (231)
Q Consensus 161 ~~~~~~i~~l~~~i~~~~ 178 (231)
|++|.|+++++..+.+..
T Consensus 160 a~tg~gv~e~~~~l~~~i 177 (182)
T PTZ00133 160 ATTAQGLYEGLDWLSANI 177 (182)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999988876643
No 237
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.18 E-value=1.6e-11 Score=98.99 Aligned_cols=82 Identities=17% Similarity=0.142 Sum_probs=58.2
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE----EeeCCcEEEE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT----VLKDGQVVNV 77 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~l 77 (231)
+++|+.+.++++++|++.+| .+++|+|+||+|||||+++|+|...+ ..|.+......... ........++
T Consensus 12 ~~~~~~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~p----~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 85 (237)
T PRK11614 12 SAHYGKIQALHEVSLHINQG--EIVTLIGANGAGKTTLLGTLCGDPRA----TSGRIVFDGKDITDWQTAKIMREAVAIV 85 (237)
T ss_pred EEeeCCceeeeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHcCCCCC----CCceEEECCEecCCCCHHHHHHhCEEEe
Confidence 56788888999999999999 99999999999999999999999873 33433322211100 0012346677
Q ss_pred EeCCCCcCCCCC
Q 038053 78 IDTPGLFDSSAG 89 (231)
Q Consensus 78 ~Dtpg~~~~~~~ 89 (231)
++.+.+++..+.
T Consensus 86 ~q~~~~~~~~tv 97 (237)
T PRK11614 86 PEGRRVFSRMTV 97 (237)
T ss_pred ccCcccCCCCcH
Confidence 887777764443
No 238
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.18 E-value=1.5e-11 Score=100.14 Aligned_cols=88 Identities=15% Similarity=0.046 Sum_probs=61.0
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcccc-ccCCCCcceeeeeee------EEeeCCcE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKA-SADSSGVTKTCEMKT------TVLKDGQV 74 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~-~~~~~~~t~~~~~~~------~~~~~~~~ 74 (231)
++.|++..++++++|++.+| .+++|+|+||+|||||+++|+|...+.. .+..|.++....... ... ....
T Consensus 11 ~~~~~~~~~l~~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~-~~~i 87 (253)
T PRK14267 11 RVYYGSNHVIKGVDLKIPQN--GVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEV-RREV 87 (253)
T ss_pred EEEeCCeeeeecceEEEcCC--CEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHH-hhce
Confidence 56778788999999999999 9999999999999999999999976310 012333333221100 011 2456
Q ss_pred EEEEeCCCCcCCCCCchH
Q 038053 75 VNVIDTPGLFDSSAGSEF 92 (231)
Q Consensus 75 ~~l~Dtpg~~~~~~~~~~ 92 (231)
.++++.|.+++..+..++
T Consensus 88 ~~~~q~~~~~~~~tv~en 105 (253)
T PRK14267 88 GMVFQYPNPFPHLTIYDN 105 (253)
T ss_pred eEEecCCccCCCCcHHHH
Confidence 788899888875554443
No 239
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.18 E-value=1.3e-10 Score=92.14 Aligned_cols=142 Identities=13% Similarity=0.058 Sum_probs=79.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeC--CcEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
.+|+++|.+|+|||||+|.+++...... ..+.+..+.......... ...+.+.||||... +....
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~--~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~-----------~~~~~ 69 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEV--SDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQER-----------FRSIT 69 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC--CCceeceEEEEEEEEECCCCEEEEEEEeCCcchh-----------HHHHH
Confidence 6899999999999999999998754211 112222222111222212 24577899999542 11111
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH--------hc-CCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhhh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------AN-GGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKEY 162 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~~ 162 (231)
...+..+|++++|+|+++.-+..+.. .. ...+....+.++.|.. ...+....+ +++.+|++
T Consensus 70 ~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak 149 (211)
T cd04111 70 RSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSAR 149 (211)
T ss_pred HHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCC
Confidence 22346789999999998542222211 11 1112112233333310 012222222 56778999
Q ss_pred hHhhHHHHHHHHHHHH
Q 038053 163 SKQEISKLMGQMQESY 178 (231)
Q Consensus 163 ~~~~i~~l~~~i~~~~ 178 (231)
+|.|+.+++..+.+..
T Consensus 150 ~g~~v~e~f~~l~~~~ 165 (211)
T cd04111 150 TGDNVEEAFELLTQEI 165 (211)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999998887644
No 240
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.18 E-value=1.5e-11 Score=104.41 Aligned_cols=86 Identities=16% Similarity=0.011 Sum_probs=60.5
Q ss_pred CCCCC----CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE------EeeC
Q 038053 2 SSGMG----ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT------VLKD 71 (231)
Q Consensus 2 ~~~~~----~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~------~~~~ 71 (231)
++.|+ ...++++++|++++| .+++|+|+||||||||+++|+|...+ ..|.++........ ....
T Consensus 8 ~~~y~~~~~~~~il~~vsl~i~~G--ei~~iiG~nGsGKSTLlk~L~Gl~~p----~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 8 SKVFPQGGRTIHALNNVSLHIPAG--EIFGVIGASGAGKSTLIRCINLLERP----TSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEeCCCCCceEEEEeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCC----CceEEEECCEECCcCCHHHHHHHh
Confidence 45665 467999999999999 99999999999999999999999873 34433332211100 0002
Q ss_pred CcEEEEEeCCCCcCCCCCchHH
Q 038053 72 GQVVNVIDTPGLFDSSAGSEFV 93 (231)
Q Consensus 72 ~~~~~l~Dtpg~~~~~~~~~~~ 93 (231)
....++++.|.+++..+..+++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni 103 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNV 103 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHH
Confidence 4567888988887755554443
No 241
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.18 E-value=1.1e-11 Score=105.78 Aligned_cols=90 Identities=13% Similarity=0.141 Sum_probs=65.1
Q ss_pred CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEEeeCCcEEEEEe
Q 038053 1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTVLKDGQVVNVID 79 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~D 79 (231)
+++.|++..+++++++++.+| ..++|+|+||||||||+++|+|...+.. ..|.+....... ..........++++
T Consensus 11 l~~~~~~~~~l~~vsl~i~~G--e~~~llGpsGsGKSTLLr~iaGl~~p~~--~~G~i~~~g~~~~~~~~~~r~ig~vfQ 86 (362)
T TIGR03258 11 LRVAYGANTVLDDLSLEIEAG--ELLALIGKSGCGKTTLLRAIAGFVKAAG--LTGRIAIADRDLTHAPPHKRGLALLFQ 86 (362)
T ss_pred EEEEECCeEEEeeeEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCC--CCEEEEECCEECCCCCHHHCCEEEEEC
Confidence 357788888999999999999 9999999999999999999999987432 003333222110 00001345788999
Q ss_pred CCCCcCCCCCchHHH
Q 038053 80 TPGLFDSSAGSEFVG 94 (231)
Q Consensus 80 tpg~~~~~~~~~~~~ 94 (231)
.+.+++..++.+++.
T Consensus 87 ~~~l~p~~tv~enl~ 101 (362)
T TIGR03258 87 NYALFPHLKVEDNVA 101 (362)
T ss_pred CcccCCCCcHHHHHH
Confidence 999998877766653
No 242
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.18 E-value=1.3e-11 Score=101.31 Aligned_cols=82 Identities=12% Similarity=0.043 Sum_probs=57.4
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-e--EEeeCCcEEEEE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-T--TVLKDGQVVNVI 78 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~~l~ 78 (231)
++.|+++.++++++|++.+| .+++|+|+||||||||+++|+|...+ ..|.+....... . .........+++
T Consensus 18 ~~~~~~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~----~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 91 (265)
T PRK10575 18 SFRVPGRTLLHPLSLTFPAG--KVTGLIGHNGSGKSTLLKMLGRHQPP----SEGEILLDAQPLESWSSKAFARKVAYLP 91 (265)
T ss_pred EEEECCEEEEeeeeeEEcCC--CEEEEECCCCCCHHHHHHHHcCCCCC----CCCEEEECCEehhhCCHHHHhhheEEec
Confidence 45677788999999999999 99999999999999999999999763 334333222110 0 000023466778
Q ss_pred eCCCCcCCCCC
Q 038053 79 DTPGLFDSSAG 89 (231)
Q Consensus 79 Dtpg~~~~~~~ 89 (231)
+.+++++..+.
T Consensus 92 q~~~~~~~~tv 102 (265)
T PRK10575 92 QQLPAAEGMTV 102 (265)
T ss_pred cCCCCCCCccH
Confidence 87777664443
No 243
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.18 E-value=5.9e-11 Score=93.29 Aligned_cols=81 Identities=16% Similarity=0.152 Sum_probs=56.9
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCC--ccccccCCCCcceeeeee-eE---EeeCCcEE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRK--AFKASADSSGVTKTCEMK-TT---VLKDGQVV 75 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~--~~~~~~~~~~~t~~~~~~-~~---~~~~~~~~ 75 (231)
++.|++..++++++|++.+| .+++|+|+||+|||||+++|+|.. . +..|.+..+.... .. ........
T Consensus 7 ~~~~~~~~~l~~is~~i~~G--e~~~i~G~nGsGKStLl~~l~G~~~~~----p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (200)
T cd03217 7 HVSVGGKEILKGVNLTIKKG--EVHALMGPNGSGKSTLAKTIMGHPKYE----VTEGEILFKGEDITDLPPEERARLGIF 80 (200)
T ss_pred EEEeCCEEeeeccceEECCC--cEEEEECCCCCCHHHHHHHHhCCCcCC----CCccEEEECCEECCcCCHHHHhhCcEE
Confidence 56777788999999999999 999999999999999999999984 3 2333333322110 00 00023367
Q ss_pred EEEeCCCCcCCCC
Q 038053 76 NVIDTPGLFDSSA 88 (231)
Q Consensus 76 ~l~Dtpg~~~~~~ 88 (231)
++++.|.+++..+
T Consensus 81 ~v~q~~~~~~~~~ 93 (200)
T cd03217 81 LAFQYPPEIPGVK 93 (200)
T ss_pred EeecChhhccCcc
Confidence 7888887776443
No 244
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.17 E-value=2e-11 Score=98.15 Aligned_cols=85 Identities=20% Similarity=0.072 Sum_probs=61.1
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEEeeCCcEEEEEeC
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTVLKDGQVVNVIDT 80 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~Dt 80 (231)
+++|+++.+++++++++.+| .+++|+|+||+|||||+++|+|...+ ..|.++...... ..........++.+.
T Consensus 7 ~~~~~~~~il~~i~~~i~~G--e~~~i~G~nGsGKSTLl~~l~g~~~~----~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 80 (232)
T cd03300 7 SKFYGGFVALDGVSLDIKEG--EFFTLLGPSGCGKTTLLRLIAGFETP----TSGEILLDGKDITNLPPHKRPVNTVFQN 80 (232)
T ss_pred EEEeCCeeeeccceEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCC----CceEEEECCEEcCcCChhhcceEEEecc
Confidence 56777788999999999999 99999999999999999999999873 344343322111 000013456778888
Q ss_pred CCCcCCCCCchH
Q 038053 81 PGLFDSSAGSEF 92 (231)
Q Consensus 81 pg~~~~~~~~~~ 92 (231)
|.+++..+..++
T Consensus 81 ~~~~~~~t~~~n 92 (232)
T cd03300 81 YALFPHLTVFEN 92 (232)
T ss_pred cccCCCCcHHHH
Confidence 888765444333
No 245
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.17 E-value=1.8e-10 Score=89.16 Aligned_cols=136 Identities=14% Similarity=0.076 Sum_probs=79.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
.+|+++|.+|||||||++.++....... . .|.......... .+..+.+.|+||... +......
T Consensus 18 ~ki~ivG~~~~GKTsl~~~l~~~~~~~~---~--pt~g~~~~~~~~-~~~~~~i~D~~Gq~~-----------~~~~~~~ 80 (181)
T PLN00223 18 MRILMVGLDAAGKTTILYKLKLGEIVTT---I--PTIGFNVETVEY-KNISFTVWDVGGQDK-----------IRPLWRH 80 (181)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCccc---c--CCcceeEEEEEE-CCEEEEEEECCCCHH-----------HHHHHHH
Confidence 6899999999999999999975432111 1 121122222333 567789999999532 1111223
Q ss_pred hcCCccEEEEEEECCCCCCHHHHH------hc----CCCCcHHHHHHHHHhh----HHHHHhhcc---------chhhhh
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEEEA------AN----GGQPYTDEFLAELKRG----ATELRDQQA---------EVDSLK 160 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~----~~~l~~~~~---------~i~~is 160 (231)
.+..+|++++|+|.++.-+..+.. .. ...|++ .+.++.|.. .+++.+.+. .+..+|
T Consensus 81 ~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~pii-lv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~S 159 (181)
T PLN00223 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL-VFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTC 159 (181)
T ss_pred HhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEE-EEEECCCCCCCCCHHHHHHHhCccccCCCceEEEecc
Confidence 346789999999998432221111 11 122333 344554421 123333322 234579
Q ss_pred hhhHhhHHHHHHHHHHH
Q 038053 161 EYSKQEISKLMGQMQES 177 (231)
Q Consensus 161 ~~~~~~i~~l~~~i~~~ 177 (231)
|++|+|+.+++..+.+.
T Consensus 160 a~~g~gv~e~~~~l~~~ 176 (181)
T PLN00223 160 ATSGEGLYEGLDWLSNN 176 (181)
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 99999999988877553
No 246
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.17 E-value=5.2e-10 Score=84.42 Aligned_cols=137 Identities=18% Similarity=0.188 Sum_probs=77.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
.+|+++|.+|||||||++.+++..... ...+++.......... .+ ..+.+.||||..... .+.
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~---~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~--------~~~--- 66 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVE---KYDPTIEDSYRKQIEV-DGQQCMLEILDTAGTEQFT--------AMR--- 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc---ccCCchhhhEEEEEEE-CCEEEEEEEEECCCccccc--------hHH---
Confidence 589999999999999999998764311 1111221111111222 33 345679999965421 111
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH----------hcCCCCcHHHHHHHHHhh---------HHHHHhhc-cchhhhhh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA----------ANGGQPYTDEFLAELKRG---------ATELRDQQ-AEVDSLKE 161 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~---------~~~l~~~~-~~i~~is~ 161 (231)
...+..+|++++|+|.++.-+..+.. .....|++ .+.++.|.. ...+.... .+++.+|+
T Consensus 67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 145 (163)
T cd04136 67 DLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMV-LVGNKCDLEDERVVSREEGQALARQWGCPFYETSA 145 (163)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECccccccceecHHHHHHHHHHcCCeEEEecC
Confidence 12235789999999998543322221 11234443 333443310 01222222 26778999
Q ss_pred hhHhhHHHHHHHHHH
Q 038053 162 YSKQEISKLMGQMQE 176 (231)
Q Consensus 162 ~~~~~i~~l~~~i~~ 176 (231)
++|.|+.+++..+.+
T Consensus 146 ~~~~~v~~l~~~l~~ 160 (163)
T cd04136 146 KSKINVDEVFADLVR 160 (163)
T ss_pred CCCCCHHHHHHHHHH
Confidence 999999999887754
No 247
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.17 E-value=1.8e-11 Score=99.93 Aligned_cols=82 Identities=21% Similarity=0.101 Sum_probs=57.7
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE---EeeCCcEEEEE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT---VLKDGQVVNVI 78 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~l~ 78 (231)
++.|+++.++++++|++.+| .+++|+|+||+|||||+++|+|...+ ..|.+......... ........+++
T Consensus 8 ~~~~~~~~il~~is~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~----~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 81 (256)
T TIGR03873 8 SWSAGGRLIVDGVDVTAPPG--SLTGLLGPNGSGKSTLLRLLAGALRP----DAGTVDLAGVDLHGLSRRARARRVALVE 81 (256)
T ss_pred EEEECCEEEEeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHcCCCCC----CCCEEEECCEEcccCCHHHHhhheEEec
Confidence 56788889999999999999 99999999999999999999999873 34433332211100 00022466788
Q ss_pred eCCCCcCCCCC
Q 038053 79 DTPGLFDSSAG 89 (231)
Q Consensus 79 Dtpg~~~~~~~ 89 (231)
+.|.++...+.
T Consensus 82 q~~~~~~~~tv 92 (256)
T TIGR03873 82 QDSDTAVPLTV 92 (256)
T ss_pred ccCccCCCCCH
Confidence 88766554443
No 248
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.17 E-value=1.4e-09 Score=89.60 Aligned_cols=96 Identities=24% Similarity=0.250 Sum_probs=56.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCCccccccC------CCCcceeeeee--eEEeeCC--cEEEEEeCCCCcCCCCCc
Q 038053 21 NGKRTVVLLGRTGNGKSATGNSILGRKAFKASAD------SSGVTKTCEMK--TTVLKDG--QVVNVIDTPGLFDSSAGS 90 (231)
Q Consensus 21 g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~------~~~~t~~~~~~--~~~~~~~--~~~~l~Dtpg~~~~~~~~ 90 (231)
|...+|+++|.+|+|||||+|+|++......... ....|...... .... .+ ..+.++||||+.+....
T Consensus 2 g~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~-~g~~~~l~iiDTpGfgd~~~~- 79 (276)
T cd01850 2 GFQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEE-NGVKLKLTVIDTPGFGDNINN- 79 (276)
T ss_pred CcEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEE-CCEEEEEEEEecCCccccccc-
Confidence 3457999999999999999999999875433110 01222222221 1222 33 46889999999875422
Q ss_pred hHHHHHHHHHHhh----------------h--cCCccEEEEEEECC
Q 038053 91 EFVGKEIVKRIGL----------------A--KGGIHAVLVVFSVR 118 (231)
Q Consensus 91 ~~~~~~~~~~~~~----------------~--~~~~~~il~vvd~~ 118 (231)
......+..++.. . -.++|+++++++++
T Consensus 80 ~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~ 125 (276)
T cd01850 80 SDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPT 125 (276)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCC
Confidence 1122222211110 1 13689999999987
No 249
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.17 E-value=3.7e-10 Score=83.98 Aligned_cols=59 Identities=31% Similarity=0.388 Sum_probs=40.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFD 85 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~ 85 (231)
.+|+++|.+|+|||||+|.|++... .. ...++++.......... .+ ..+.++|+||...
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~-~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~ 62 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKF-IT-EYKPGTTRNYVTTVIEE-DGKTYKFNLLDTAGQED 62 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC-cC-cCCCCceeeeeEEEEEE-CCEEEEEEEEECCCccc
Confidence 5899999999999999999999883 22 12333443333222333 44 5678899999543
No 250
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.17 E-value=1.3e-11 Score=101.29 Aligned_cols=80 Identities=11% Similarity=0.036 Sum_probs=56.9
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eE--EeeCCcEEEEE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TT--VLKDGQVVNVI 78 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~--~~~~~~~~~l~ 78 (231)
++.|++..++++++|++.+| .+++|+|+||||||||+++|+|...+ ..|.++...... .. .......++++
T Consensus 14 ~~~~~~~~~l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~----~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 87 (265)
T PRK10253 14 TLGYGKYTVAENLTVEIPDG--HFTAIIGPNGCGKSTLLRTLSRLMTP----AHGHVWLDGEHIQHYASKEVARRIGLLA 87 (265)
T ss_pred EEEECCEEEeeecceEECCC--CEEEEECCCCCCHHHHHHHHcCCCCC----CCcEEEECCEEhhhCCHHHHhhheEEee
Confidence 56788888999999999999 99999999999999999999999873 334333322110 00 00023467788
Q ss_pred eCCCCcCCC
Q 038053 79 DTPGLFDSS 87 (231)
Q Consensus 79 Dtpg~~~~~ 87 (231)
+.|.+++..
T Consensus 88 q~~~~~~~~ 96 (265)
T PRK10253 88 QNATTPGDI 96 (265)
T ss_pred ccCcCCCCC
Confidence 887766543
No 251
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.17 E-value=1.3e-11 Score=106.38 Aligned_cols=83 Identities=17% Similarity=0.118 Sum_probs=59.4
Q ss_pred CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE---EeeCCcEEEE
Q 038053 1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT---VLKDGQVVNV 77 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~l 77 (231)
++++|+++.++++++|++.+| .+++|+|+||||||||+++|+|...+ ..|.+......... ........++
T Consensus 9 ls~~y~~~~vL~~vs~~i~~G--eiv~liGpNGaGKSTLLk~LaGll~p----~sG~I~l~G~~i~~~~~~~~~~~ig~v 82 (402)
T PRK09536 9 LSVEFGDTTVLDGVDLSVREG--SLVGLVGPNGAGKTTLLRAINGTLTP----TAGTVLVAGDDVEALSARAASRRVASV 82 (402)
T ss_pred EEEEECCEEEEEeeEEEECCC--CEEEEECCCCchHHHHHHHHhcCCCC----CCcEEEECCEEcCcCCHHHHhcceEEE
Confidence 357888899999999999999 99999999999999999999999873 34434332211100 0012346778
Q ss_pred EeCCCCcCCCCC
Q 038053 78 IDTPGLFDSSAG 89 (231)
Q Consensus 78 ~Dtpg~~~~~~~ 89 (231)
++.+.++...+.
T Consensus 83 ~q~~~l~~~~tv 94 (402)
T PRK09536 83 PQDTSLSFEFDV 94 (402)
T ss_pred ccCCCCCCCCCH
Confidence 888877554433
No 252
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.17 E-value=2.1e-11 Score=98.30 Aligned_cols=84 Identities=24% Similarity=0.223 Sum_probs=60.3
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-EEeeCCcEEEEEeC
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-TVLKDGQVVNVIDT 80 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~Dt 80 (231)
++.|+.+++++++++++.+| .+++|+|+||+|||||+++|+|...+ ..|.++.+..... ........+++++.
T Consensus 7 ~~~~~~~~il~~is~~i~~G--e~~~l~G~nGsGKSTLl~~i~G~~~~----~~G~i~i~g~~~~~~~~~~~~i~~~~q~ 80 (237)
T TIGR00968 7 SKRFGSFQALDDVNLEVPTG--SLVALLGPSGSGKSTLLRIIAGLEQP----DSGRIRLNGQDATRVHARDRKIGFVFQH 80 (237)
T ss_pred EEEECCeeeeeeEEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCC----CceEEEECCEEcCcCChhhcCEEEEecC
Confidence 45677888999999999999 99999999999999999999999763 3443333221110 00113456788888
Q ss_pred CCCcCCCCCch
Q 038053 81 PGLFDSSAGSE 91 (231)
Q Consensus 81 pg~~~~~~~~~ 91 (231)
|.+++..+..+
T Consensus 81 ~~~~~~~t~~e 91 (237)
T TIGR00968 81 YALFKHLTVRD 91 (237)
T ss_pred hhhccCCcHHH
Confidence 88887544433
No 253
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.17 E-value=1.5e-10 Score=87.63 Aligned_cols=138 Identities=12% Similarity=0.119 Sum_probs=77.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC-ccccccCCCCcceeeee--eeEEe--eCCcEEEEEeCCCCcCCCCCchHHHHHHHH
Q 038053 25 TVVLLGRTGNGKSATGNSILGRK-AFKASADSSGVTKTCEM--KTTVL--KDGQVVNVIDTPGLFDSSAGSEFVGKEIVK 99 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~-~~~~~~~~~~~t~~~~~--~~~~~--~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~ 99 (231)
+|+++|.+|||||||++.+.+.. .+. .....|..... ..... .....+.+.||||... +..
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~ 67 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFP---KNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQEL-----------YSD 67 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcC---ccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHH-----------HHH
Confidence 69999999999999999998642 221 11112221111 11111 1335778999999432 111
Q ss_pred HHhhhcCCccEEEEEEECCCCCCHHHHH--------hcCCCCcHHHHHHHHHhhH---------HHHHhhcc-chhhhhh
Q 038053 100 RIGLAKGGIHAVLVVFSVRSRFSQEEEA--------ANGGQPYTDEFLAELKRGA---------TELRDQQA-EVDSLKE 161 (231)
Q Consensus 100 ~~~~~~~~~~~il~vvd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~---------~~l~~~~~-~i~~is~ 161 (231)
.....+..+|++++|+|+++.-+..... .....|.+ .+.++.|... ..+..... +++.+|+
T Consensus 68 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 146 (164)
T cd04101 68 MVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGV-LVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSA 146 (164)
T ss_pred HHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEE-EEEECcccccccCCCHHHHHHHHHHcCCeEEEEeC
Confidence 2233457889999999998542222111 11123332 2334433100 12222222 5677899
Q ss_pred hhHhhHHHHHHHHHHH
Q 038053 162 YSKQEISKLMGQMQES 177 (231)
Q Consensus 162 ~~~~~i~~l~~~i~~~ 177 (231)
.++.|+.+++..+...
T Consensus 147 ~~~~gi~~l~~~l~~~ 162 (164)
T cd04101 147 LRGVGYEEPFESLARA 162 (164)
T ss_pred CCCCChHHHHHHHHHH
Confidence 9999999998877654
No 254
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.17 E-value=1.6e-11 Score=96.20 Aligned_cols=83 Identities=14% Similarity=0.005 Sum_probs=55.5
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCC
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTP 81 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtp 81 (231)
++.|+++.+++ +++++++| .+++|+|+||+|||||+++|+|...+ ..|.+......... .......++.+.+
T Consensus 8 ~~~~~~~~l~~-vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~----~~G~i~~~g~~i~~-~~~~~~~~~~~~~ 79 (195)
T PRK13541 8 QFNIEQKNLFD-LSITFLPS--AITYIKGANGCGKSSLLRMIAGIMQP----SSGNIYYKNCNINN-IAKPYCTYIGHNL 79 (195)
T ss_pred eEEECCcEEEE-EEEEEcCC--cEEEEECCCCCCHHHHHHHHhcCCCC----CCcEEEECCcccCh-hhhhhEEeccCCc
Confidence 56777777776 99999999 99999999999999999999999873 34433332211000 0012345667777
Q ss_pred CCcCCCCCchH
Q 038053 82 GLFDSSAGSEF 92 (231)
Q Consensus 82 g~~~~~~~~~~ 92 (231)
++++..+..++
T Consensus 80 ~~~~~~tv~~~ 90 (195)
T PRK13541 80 GLKLEMTVFEN 90 (195)
T ss_pred CCCccCCHHHH
Confidence 66654444333
No 255
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.16 E-value=6e-10 Score=87.47 Aligned_cols=151 Identities=19% Similarity=0.241 Sum_probs=88.0
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCC-----CCcceeee-eeeEEeeC--CcEEEEEeCCCCcCCCCC
Q 038053 18 SSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADS-----SGVTKTCE-MKTTVLKD--GQVVNVIDTPGLFDSSAG 89 (231)
Q Consensus 18 i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~-----~~~t~~~~-~~~~~~~~--~~~~~l~Dtpg~~~~~~~ 89 (231)
...|-.+.|++||.+|.|||||+|.|+......++... ...|+... ..+....+ ...+.++|||||.+.-..
T Consensus 41 mk~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN 120 (336)
T KOG1547|consen 41 MKTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINN 120 (336)
T ss_pred HhccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCc
Confidence 34566689999999999999999999976543322111 11122221 11111112 346789999999864322
Q ss_pred chHHHHHHHHHH----hhh--------------cCCccEEEEEEECCCCCCHHHHHhcCCCCcHHHHHHHHHhhHHHHHh
Q 038053 90 SEFVGKEIVKRI----GLA--------------KGGIHAVLVVFSVRSRFSQEEEAANGGQPYTDEFLAELKRGATELRD 151 (231)
Q Consensus 90 ~~~~~~~~~~~~----~~~--------------~~~~~~il~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 151 (231)
++..+.+.+++ ... ..+.|++++++.++ .....|.-+..+.++. ++.+
T Consensus 121 -~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~pt---------GhsLrplDieflkrLt----~vvN 186 (336)
T KOG1547|consen 121 -DNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPT---------GHSLRPLDIEFLKRLT----EVVN 186 (336)
T ss_pred -cchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCC---------CCccCcccHHHHHHHh----hhhe
Confidence 22222222221 111 14789999999998 5666777666655544 3344
Q ss_pred hccchhhhhhhhHhhHHHHHHHHHHHHHHHH
Q 038053 152 QQAEVDSLKEYSKQEISKLMGQMQESYEDQI 182 (231)
Q Consensus 152 ~~~~i~~is~~~~~~i~~l~~~i~~~~~~~~ 182 (231)
.++-|..-+..+=++...+.+.+.+.++.+-
T Consensus 187 vvPVIakaDtlTleEr~~FkqrI~~el~~~~ 217 (336)
T KOG1547|consen 187 VVPVIAKADTLTLEERSAFKQRIRKELEKHG 217 (336)
T ss_pred eeeeEeecccccHHHHHHHHHHHHHHHHhcC
Confidence 3333333444566677777777777665553
No 256
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.16 E-value=1.4e-10 Score=88.24 Aligned_cols=137 Identities=17% Similarity=0.125 Sum_probs=77.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcc--eeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVT--KTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVK 99 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t--~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~ 99 (231)
.+|+++|++|||||||++.+++.... ...+.| .+........ .+ ..+.+.|+||... +..
T Consensus 8 ~~v~v~G~~~~GKSsli~~l~~~~~~----~~~~~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~-----------~~~ 71 (169)
T cd04114 8 FKIVLIGNAGVGKTCLVRRFTQGLFP----PGQGATIGVDFMIKTVEI-KGEKIKLQIWDTAGQER-----------FRS 71 (169)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC----CCCCCceeeEEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHH
Confidence 78999999999999999999865431 112222 1222222222 33 3466789999542 111
Q ss_pred HHhhhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhhH---------HHHHhhc-cchhhhh
Q 038053 100 RIGLAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRGA---------TELRDQQ-AEVDSLK 160 (231)
Q Consensus 100 ~~~~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~---------~~l~~~~-~~i~~is 160 (231)
.....+..+|++++++|+++..+..... .....|.+ .+.++.|... ..+.... .++..+|
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i-~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~S 150 (169)
T cd04114 72 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITI-LVGNKIDLAERREVSQQRAEEFSDAQDMYYLETS 150 (169)
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEE-EEEECcccccccccCHHHHHHHHHHcCCeEEEee
Confidence 1223456789999999998532221111 11122222 2334433110 1222211 2567789
Q ss_pred hhhHhhHHHHHHHHHHH
Q 038053 161 EYSKQEISKLMGQMQES 177 (231)
Q Consensus 161 ~~~~~~i~~l~~~i~~~ 177 (231)
+.+|.|+.+++..+...
T Consensus 151 a~~~~gv~~l~~~i~~~ 167 (169)
T cd04114 151 AKESDNVEKLFLDLACR 167 (169)
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 99999999998887653
No 257
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.16 E-value=2.9e-10 Score=88.87 Aligned_cols=135 Identities=16% Similarity=0.214 Sum_probs=76.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCC-cccccc-------------CCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRK-AFKASA-------------DSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAG 89 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~-~~~~~~-------------~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~ 89 (231)
.+|+++|.+|+|||||+|.+++.. .+.... ...+.|.......... .+..+.++||||...
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~-~~~~~~l~DtpG~~~---- 77 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTY-KDTKINIVDTPGHAD---- 77 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEE-CCEEEEEEECCCcHH----
Confidence 689999999999999999999632 111100 0123333333333333 567889999999754
Q ss_pred chHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhh---H----HHHHhhc----
Q 038053 90 SEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRG---A----TELRDQQ---- 153 (231)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~---~----~~l~~~~---- 153 (231)
+.......+..+|++++|+|++++....... .....|++ .+++++|.. . +++.+.+
T Consensus 78 -------~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~i-iv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 149 (194)
T cd01891 78 -------FGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPI-VVINKIDRPDARPEEVVDEVFDLFIELG 149 (194)
T ss_pred -------HHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEE-EEEECCCCCCCCHHHHHHHHHHHHHHhC
Confidence 1112223346789999999998654333222 12233433 233443310 0 1122211
Q ss_pred ------c-chhhhhhhhHhhHHHHH
Q 038053 154 ------A-EVDSLKEYSKQEISKLM 171 (231)
Q Consensus 154 ------~-~i~~is~~~~~~i~~l~ 171 (231)
+ +++++|+++|.++.++.
T Consensus 150 ~~~~~~~~~iv~~Sa~~g~~~~~~~ 174 (194)
T cd01891 150 ATEEQLDFPVLYASAKNGWASLNLE 174 (194)
T ss_pred CccccCccCEEEeehhccccccccc
Confidence 2 67788999998875543
No 258
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.16 E-value=3.8e-11 Score=91.24 Aligned_cols=87 Identities=21% Similarity=0.106 Sum_probs=60.4
Q ss_pred CCCCCCC-cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeee----e--eEEeeCCc
Q 038053 1 MSSGMGE-RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEM----K--TTVLKDGQ 73 (231)
Q Consensus 1 ~~~~~~~-~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~----~--~~~~~~~~ 73 (231)
++|.|+. ..+|++++|.+++| ..+-++|++|||||||+++|++...+.. |.+...... . ........
T Consensus 7 V~k~Y~~g~~aL~~vs~~i~~G--ef~fl~GpSGAGKSTllkLi~~~e~pt~----G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 7 VSKAYPGGREALRDVSFHIPKG--EFVFLTGPSGAGKSTLLKLIYGEERPTR----GKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred hhhhcCCCchhhhCceEeecCc--eEEEEECCCCCCHHHHHHHHHhhhcCCC----ceEEECCeecccccccccchhhhe
Confidence 4677864 44999999999999 9999999999999999999999998443 333321110 0 11111456
Q ss_pred EEEEEeCCCCcCCCCCchHH
Q 038053 74 VVNVIDTPGLFDSSAGSEFV 93 (231)
Q Consensus 74 ~~~l~Dtpg~~~~~~~~~~~ 93 (231)
.+++++.--+.+..++.+++
T Consensus 81 IGvVFQD~rLL~~~tvyeNV 100 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENV 100 (223)
T ss_pred eeeEeeeccccccchHhhhh
Confidence 67777776666655555443
No 259
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.16 E-value=2.9e-11 Score=98.37 Aligned_cols=89 Identities=13% Similarity=0.091 Sum_probs=60.2
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccc-cCCCCcceeeeeee-----EEeeCCcEE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKAS-ADSSGVTKTCEMKT-----TVLKDGQVV 75 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~-~~~~~~t~~~~~~~-----~~~~~~~~~ 75 (231)
++.|++++++++++|++.+| .+++|+|+||+|||||+++|+|...+... ...|.+........ .........
T Consensus 11 ~~~~~~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 88 (252)
T PRK14272 11 NIYYGDKQAVKNVNLDVQRG--TVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVG 88 (252)
T ss_pred EEEECCEEeeccceEEEcCC--CEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeE
Confidence 56788888999999999999 99999999999999999999998753110 01233332221100 001133567
Q ss_pred EEEeCCCCcCCCCCchH
Q 038053 76 NVIDTPGLFDSSAGSEF 92 (231)
Q Consensus 76 ~l~Dtpg~~~~~~~~~~ 92 (231)
++++.|.+++..+..++
T Consensus 89 ~~~q~~~~~~~~t~~en 105 (252)
T PRK14272 89 MVFQKPNPFPTMSVFDN 105 (252)
T ss_pred EEeccCccCcCCCHHHH
Confidence 88888888775554443
No 260
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.16 E-value=1.3e-10 Score=90.01 Aligned_cols=78 Identities=18% Similarity=0.159 Sum_probs=53.7
Q ss_pred cCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-E---EeeCCcEEEEEeCC---C
Q 038053 10 IDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-T---VLKDGQVVNVIDTP---G 82 (231)
Q Consensus 10 ~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-~---~~~~~~~~~l~Dtp---g 82 (231)
+++++++++++| ..++|+|+||+|||||+++|+|...+ ..|.++....... . ........++++.| +
T Consensus 15 ~l~~vs~~i~~G--~~~~i~G~nGsGKSTLl~~l~G~~~~----~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 88 (182)
T cd03215 15 AVRDVSFEVRAG--EIVGIAGLVGNGQTELAEALFGLRPP----ASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREG 88 (182)
T ss_pred eecceEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCC----CCceEEECCEECCccCHHHHHhCCeEEecCCcccCc
Confidence 899999999999 99999999999999999999999873 4444443321110 0 00123567777774 4
Q ss_pred CcCCCCCchHH
Q 038053 83 LFDSSAGSEFV 93 (231)
Q Consensus 83 ~~~~~~~~~~~ 93 (231)
+++..+..+++
T Consensus 89 ~~~~~t~~e~l 99 (182)
T cd03215 89 LVLDLSVAENI 99 (182)
T ss_pred ccCCCcHHHHH
Confidence 66555554443
No 261
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.16 E-value=2.3e-11 Score=98.82 Aligned_cols=90 Identities=17% Similarity=0.085 Sum_probs=60.3
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcccc-ccCCCCcceeeeee-e--EEeeCCcEEEE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKA-SADSSGVTKTCEMK-T--TVLKDGQVVNV 77 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~-~~~~~~~t~~~~~~-~--~~~~~~~~~~l 77 (231)
++.|++..++++++|++++| .+++|+|+||||||||+++|+|...+.. .+..|.+....... . .........++
T Consensus 10 ~~~~~~~~~l~~is~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v 87 (250)
T PRK14247 10 KVSFGQVEVLDGVNLEIPDN--TITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMV 87 (250)
T ss_pred EEEECCeeeeecceeEEcCC--CEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEE
Confidence 56788888999999999999 9999999999999999999999875210 01223222221100 0 00012456788
Q ss_pred EeCCCCcCCCCCchHH
Q 038053 78 IDTPGLFDSSAGSEFV 93 (231)
Q Consensus 78 ~Dtpg~~~~~~~~~~~ 93 (231)
++.|.+++..+..+++
T Consensus 88 ~q~~~~~~~~tv~enl 103 (250)
T PRK14247 88 FQIPNPIPNLSIFENV 103 (250)
T ss_pred eccCccCCCCcHHHHH
Confidence 9988877655544443
No 262
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.16 E-value=2.3e-11 Score=93.23 Aligned_cols=84 Identities=20% Similarity=0.231 Sum_probs=64.1
Q ss_pred CCCCCCCcc-cCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeee---eeEEeeCCcEEE
Q 038053 1 MSSGMGERV-IDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEM---KTTVLKDGQVVN 76 (231)
Q Consensus 1 ~~~~~~~~~-~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~---~~~~~~~~~~~~ 76 (231)
++|+|+... +++|++|++..| .++||+|+|||||||+++.|.+... |+.|.++.+.-. ..... ....++
T Consensus 7 l~K~y~~~v~AvrdVSF~ae~G--ei~GlLG~NGAGKTT~LRmiatlL~----P~~G~v~idg~d~~~~p~~v-rr~IGV 79 (245)
T COG4555 7 LTKSYGSKVQAVRDVSFEAEEG--EITGLLGENGAGKTTLLRMIATLLI----PDSGKVTIDGVDTVRDPSFV-RRKIGV 79 (245)
T ss_pred hhhhccCHHhhhhheeEEeccc--eEEEEEcCCCCCchhHHHHHHHhcc----CCCceEEEeecccccChHHH-hhhcce
Confidence 478898776 899999999999 9999999999999999999999988 455555543211 11111 456677
Q ss_pred EEeCCCCcCCCCCch
Q 038053 77 VIDTPGLFDSSAGSE 91 (231)
Q Consensus 77 l~Dtpg~~~~~~~~~ 91 (231)
+.+.-|+|...+..+
T Consensus 80 l~~e~glY~RlT~rE 94 (245)
T COG4555 80 LFGERGLYARLTARE 94 (245)
T ss_pred ecCCcChhhhhhHHH
Confidence 888899998555443
No 263
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.16 E-value=3.9e-11 Score=104.79 Aligned_cols=137 Identities=15% Similarity=0.147 Sum_probs=84.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccc--------------cc---------------CCCCcceeeeeeeEEeeCCcE
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKA--------------SA---------------DSSGVTKTCEMKTTVLKDGQV 74 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~--------------~~---------------~~~~~t~~~~~~~~~~~~~~~ 74 (231)
.+|+++|++|+|||||++.|+....... +. ...|+|.+.......+ .+..
T Consensus 7 ~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~-~~~~ 85 (425)
T PRK12317 7 LNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET-DKYY 85 (425)
T ss_pred EEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec-CCeE
Confidence 7899999999999999999985543221 00 1467777776666655 6788
Q ss_pred EEEEeCCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCC--CCCHHHHH-----hcCCCCcHHHHHHHHHhh--
Q 038053 75 VNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRS--RFSQEEEA-----ANGGQPYTDEFLAELKRG-- 145 (231)
Q Consensus 75 ~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~--~~~~~~~~-----~~~~~~~~~~~~~~~~~~-- 145 (231)
+.++||||..+. ...+......+|++++|+|+++ .+...... .....+.++.++|++|..
T Consensus 86 i~liDtpG~~~~-----------~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~ 154 (425)
T PRK12317 86 FTIVDCPGHRDF-----------VKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNY 154 (425)
T ss_pred EEEEECCCcccc-----------hhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccc
Confidence 999999996431 1112223467899999999986 44433322 112222222233443310
Q ss_pred --------HHHHHhhc---------cchhhhhhhhHhhHHHHHH
Q 038053 146 --------ATELRDQQ---------AEVDSLKEYSKQEISKLMG 172 (231)
Q Consensus 146 --------~~~l~~~~---------~~i~~is~~~~~~i~~l~~ 172 (231)
.+++.+.+ -+++++|+++|.|+.++..
T Consensus 155 ~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~ 198 (425)
T PRK12317 155 DEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE 198 (425)
T ss_pred cHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence 01222221 1477889999999987553
No 264
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.16 E-value=1.4e-11 Score=97.59 Aligned_cols=83 Identities=16% Similarity=0.120 Sum_probs=58.3
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee---EEeeCCcEEEEE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT---TVLKDGQVVNVI 78 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~l~ 78 (231)
++.|++.+++++++|++.+| +++|+|+||||||||+++|+|...+ ..|.+........ ... .....+++
T Consensus 7 ~~~~~~~~~l~~vs~~i~~g---~~~i~G~nGsGKSTLl~~l~Gl~~~----~~G~i~~~g~~~~~~~~~~-~~~i~~~~ 78 (211)
T cd03264 7 TKRYGKKRALDGVSLTLGPG---MYGLLGPNGAGKTTLMRILATLTPP----SSGTIRIDGQDVLKQPQKL-RRRIGYLP 78 (211)
T ss_pred EEEECCEEEEcceeEEEcCC---cEEEECCCCCCHHHHHHHHhCCCCC----CccEEEECCCccccchHHH-HhheEEec
Confidence 56677778999999999997 8999999999999999999999773 3333332211000 011 34567788
Q ss_pred eCCCCcCCCCCchH
Q 038053 79 DTPGLFDSSAGSEF 92 (231)
Q Consensus 79 Dtpg~~~~~~~~~~ 92 (231)
+.|.+++..+..++
T Consensus 79 q~~~~~~~~tv~~~ 92 (211)
T cd03264 79 QEFGVYPNFTVREF 92 (211)
T ss_pred CCCcccccCCHHHH
Confidence 88887765544443
No 265
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.16 E-value=7.9e-11 Score=87.76 Aligned_cols=45 Identities=29% Similarity=0.361 Sum_probs=41.6
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
+++|++.+++++++|.+++| .+++|+|+||+|||||+++|+|...
T Consensus 7 ~~~~~~~~~l~~~~~~~~~G--e~~~i~G~nGsGKStLl~~l~G~~~ 51 (144)
T cd03221 7 SKTYGGKLLLKDISLTINPG--DRIGLVGRNGAGKSTLLKLIAGELE 51 (144)
T ss_pred EEEECCceEEEeeEEEECCC--CEEEEECCCCCCHHHHHHHHcCCCC
Confidence 45677778999999999999 9999999999999999999999987
No 266
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.16 E-value=1.6e-10 Score=89.74 Aligned_cols=139 Identities=16% Similarity=0.100 Sum_probs=78.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRIG 102 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~ 102 (231)
+|+++|.+|+|||||+|.+++...... ..+....+........ .+ ..+.+.||||... +.....
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~g~~~-----------~~~~~~ 67 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDEFSES--TKSTIGVDFKIKTVYI-ENKIIKLQIWDTNGQER-----------FRSLNN 67 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCC--CCCceeeEEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHhhHH
Confidence 699999999999999999998764211 1111111111122222 22 3466899999543 111223
Q ss_pred hhcCCccEEEEEEECCCCCCHHHHH--------h-cCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhhhh
Q 038053 103 LAKGGIHAVLVVFSVRSRFSQEEEA--------A-NGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKEYS 163 (231)
Q Consensus 103 ~~~~~~~~il~vvd~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~~~ 163 (231)
..+..+|++++|+|+++.-+..... . ....|++ .+.++.|.. ...+..... +++.+|+++
T Consensus 68 ~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~i-vv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~ 146 (188)
T cd04125 68 SYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKV-IVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQ 146 (188)
T ss_pred HHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEE-EEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCC
Confidence 3457889999999998543322211 1 1122322 233333211 012222222 577889999
Q ss_pred HhhHHHHHHHHHHHH
Q 038053 164 KQEISKLMGQMQESY 178 (231)
Q Consensus 164 ~~~i~~l~~~i~~~~ 178 (231)
+.|+++++..+....
T Consensus 147 ~~~i~~~f~~l~~~~ 161 (188)
T cd04125 147 SINVEEAFILLVKLI 161 (188)
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999888876654
No 267
>PLN03110 Rab GTPase; Provisional
Probab=99.16 E-value=2.7e-10 Score=90.66 Aligned_cols=140 Identities=14% Similarity=0.139 Sum_probs=80.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
.+|+++|++|+|||||++.+++...... ..+....+........ .+ ..+.+.||||... +....
T Consensus 13 ~Ki~ivG~~~vGKStLi~~l~~~~~~~~--~~~t~g~~~~~~~v~~-~~~~~~l~l~Dt~G~~~-----------~~~~~ 78 (216)
T PLN03110 13 FKIVLIGDSGVGKSNILSRFTRNEFCLE--SKSTIGVEFATRTLQV-EGKTVKAQIWDTAGQER-----------YRAIT 78 (216)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCceeEEEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHHHH
Confidence 6899999999999999999998764211 1111111211122222 22 3677889999432 11222
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhhh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKEY 162 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~~ 162 (231)
...+..++++++|+|+++.-+..... .....|++ .+.++.|.. ...+..... +++.+|++
T Consensus 79 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-iv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~ 157 (216)
T PLN03110 79 SAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIM-MAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSAL 157 (216)
T ss_pred HHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEE-EEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCC
Confidence 33446789999999998543322211 11223333 233333310 012222222 67889999
Q ss_pred hHhhHHHHHHHHHHHH
Q 038053 163 SKQEISKLMGQMQESY 178 (231)
Q Consensus 163 ~~~~i~~l~~~i~~~~ 178 (231)
++.|+++++..+....
T Consensus 158 ~g~~v~~lf~~l~~~i 173 (216)
T PLN03110 158 EATNVEKAFQTILLEI 173 (216)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999888876543
No 268
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.16 E-value=1.6e-11 Score=105.27 Aligned_cols=87 Identities=14% Similarity=0.089 Sum_probs=65.2
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-EEeeCCcEEEEEeC
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-TVLKDGQVVNVIDT 80 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~Dt 80 (231)
++.|++..++++++|++.+| ..++|+|+||||||||+++|+|...+ ..|.+..+..... .........++++.
T Consensus 26 ~~~~~~~~~l~~vsl~i~~G--e~~~llGpsGsGKSTLLr~IaGl~~p----~~G~I~i~g~~i~~~~~~~r~ig~vfQ~ 99 (377)
T PRK11607 26 TKSFDGQHAVDDVSLTIYKG--EIFALLGASGCGKSTLLRMLAGFEQP----TAGQIMLDGVDLSHVPPYQRPINMMFQS 99 (377)
T ss_pred EEEECCEEEEeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCC----CceEEEECCEECCCCCHHHCCEEEEeCC
Confidence 56778778999999999999 99999999999999999999999874 3443333221110 00113457889999
Q ss_pred CCCcCCCCCchHHH
Q 038053 81 PGLFDSSAGSEFVG 94 (231)
Q Consensus 81 pg~~~~~~~~~~~~ 94 (231)
+.++++.++.+++.
T Consensus 100 ~~lfp~ltv~eNi~ 113 (377)
T PRK11607 100 YALFPHMTVEQNIA 113 (377)
T ss_pred CccCCCCCHHHHHH
Confidence 99999887766653
No 269
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.16 E-value=1.5e-11 Score=100.24 Aligned_cols=80 Identities=15% Similarity=0.057 Sum_probs=56.0
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eE--EeeCCcEEEEE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TT--VLKDGQVVNVI 78 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~--~~~~~~~~~l~ 78 (231)
+++|+++.+|++++|++.+| .+++|+|+||+|||||+++|+|...+ ..|.+....... .. ........+++
T Consensus 9 ~~~~~~~~il~~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~----~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 82 (255)
T PRK11231 9 TVGYGTKRILNDLSLSLPTG--KITALIGPNGCGKSTLLKCFARLLTP----QSGTVFLGDKPISMLSSRQLARRLALLP 82 (255)
T ss_pred EEEECCEEEEeeeeeEEcCC--cEEEEECCCCCCHHHHHHHHhCCcCC----CCcEEEECCEEhHHCCHHHHhhheEEec
Confidence 56788888999999999999 99999999999999999999998763 333333222110 00 00023456777
Q ss_pred eCCCCcCCC
Q 038053 79 DTPGLFDSS 87 (231)
Q Consensus 79 Dtpg~~~~~ 87 (231)
+.+.+++..
T Consensus 83 q~~~~~~~~ 91 (255)
T PRK11231 83 QHHLTPEGI 91 (255)
T ss_pred ccCCCCCCc
Confidence 777666543
No 270
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.16 E-value=3.7e-11 Score=107.79 Aligned_cols=77 Identities=13% Similarity=0.136 Sum_probs=58.1
Q ss_pred CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeC
Q 038053 1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDT 80 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dt 80 (231)
+++.|+++++|++++|++.+| .+++|+|+||||||||+++|+|... +..|.+.... .....++++.
T Consensus 7 ls~~~~~~~il~~vsl~i~~G--e~~~liG~NGsGKSTLl~~l~Gl~~----p~~G~i~~~~--------~~~i~~~~q~ 72 (530)
T PRK15064 7 ITMQFGAKPLFENISVKFGGG--NRYGLIGANGCGKSTFMKILGGDLE----PSAGNVSLDP--------NERLGKLRQD 72 (530)
T ss_pred EEEEeCCcEeEeCCEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCC----CCCceEEecC--------CCEEEEEecc
Confidence 367788889999999999999 9999999999999999999999886 3334333211 1235667787
Q ss_pred CCCcCCCCCch
Q 038053 81 PGLFDSSAGSE 91 (231)
Q Consensus 81 pg~~~~~~~~~ 91 (231)
|.+++..++.+
T Consensus 73 ~~~~~~~tv~e 83 (530)
T PRK15064 73 QFAFEEFTVLD 83 (530)
T ss_pred CCcCCCCcHHH
Confidence 77666544433
No 271
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.15 E-value=2.5e-11 Score=98.11 Aligned_cols=78 Identities=18% Similarity=0.086 Sum_probs=56.3
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-e--EEeeCCcEEEEE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-T--TVLKDGQVVNVI 78 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~~l~ 78 (231)
++.|+++.++++++|++.+| .+++|+|+||||||||+++|+|...+ ..|.++...... . .........+++
T Consensus 10 ~~~~~~~~~l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p----~~G~i~~~g~~i~~~~~~~~~~~i~~~~ 83 (241)
T PRK14250 10 SYSSFGKEILKDISVKFEGG--AIYTIVGPSGAGKSTLIKLINRLIDP----TEGSILIDGVDIKTIDVIDLRRKIGMVF 83 (241)
T ss_pred EEEeCCeeeeeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CCcEEEECCEEhhhcChHHhhhcEEEEe
Confidence 56677788999999999999 99999999999999999999999763 344343322110 0 000123467788
Q ss_pred eCCCCcC
Q 038053 79 DTPGLFD 85 (231)
Q Consensus 79 Dtpg~~~ 85 (231)
+.|.+++
T Consensus 84 q~~~~~~ 90 (241)
T PRK14250 84 QQPHLFE 90 (241)
T ss_pred cCchhch
Confidence 8877664
No 272
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.15 E-value=2.5e-11 Score=102.71 Aligned_cols=86 Identities=15% Similarity=0.027 Sum_probs=62.0
Q ss_pred CCCCC----CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEE------eeC
Q 038053 2 SSGMG----ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTV------LKD 71 (231)
Q Consensus 2 ~~~~~----~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~------~~~ 71 (231)
++.|+ ...++++++|++++| .+++|+|+||||||||+++|+|...+ +.|.+..+....... ...
T Consensus 8 sk~y~~~~~~~~~L~~vsl~i~~G--ei~gIiG~sGaGKSTLlr~I~gl~~p----~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 8 TKVFHQGTKTIQALNNVSLHVPAG--QIYGVIGASGAGKSTLIRCVNLLERP----TSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEECCCCcceEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCC----CceEEEECCEECCcCCHHHHHHHh
Confidence 55664 247999999999999 99999999999999999999999873 444444332211000 013
Q ss_pred CcEEEEEeCCCCcCCCCCchHH
Q 038053 72 GQVVNVIDTPGLFDSSAGSEFV 93 (231)
Q Consensus 72 ~~~~~l~Dtpg~~~~~~~~~~~ 93 (231)
....++++.+.+++..++.+++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni 103 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNV 103 (343)
T ss_pred cCEEEEECCccccccCcHHHHH
Confidence 4678899999988766665544
No 273
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.15 E-value=2.5e-11 Score=96.10 Aligned_cols=75 Identities=23% Similarity=0.152 Sum_probs=53.7
Q ss_pred CCCCCC--cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE---EeeCCcEEE
Q 038053 2 SSGMGE--RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT---VLKDGQVVN 76 (231)
Q Consensus 2 ~~~~~~--~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~ 76 (231)
++.|++ ..++++++|++.+| .+++|+|+||||||||+++|+|... +..|.++........ ........+
T Consensus 6 ~~~~~~~~~~il~~vs~~i~~G--~~~~l~G~nGsGKSTLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 6 SFSYPDGARPALDDISLTIKKG--EFVLIVGPNGSGKSTLLRLLNGLLG----PTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred EEecCCCCeeeecceEEEEcCC--cEEEEECCCCCCHHHHHHHHhcCCC----CCCceEEECCEEcccCCHHHHHhhceE
Confidence 566776 78999999999999 9999999999999999999999987 344444332211100 000234567
Q ss_pred EEeCCC
Q 038053 77 VIDTPG 82 (231)
Q Consensus 77 l~Dtpg 82 (231)
+++.|.
T Consensus 80 ~~q~~~ 85 (211)
T cd03225 80 VFQNPD 85 (211)
T ss_pred EecChh
Confidence 888775
No 274
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.15 E-value=2.3e-11 Score=99.60 Aligned_cols=87 Identities=15% Similarity=0.071 Sum_probs=59.8
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE--------EeeCCc
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT--------VLKDGQ 73 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~--------~~~~~~ 73 (231)
++.|+++.++++++|++.+| .+++|+|+||||||||+++|+|...+..+ ..|.++........ ......
T Consensus 11 ~~~~~~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~p~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 87 (262)
T PRK09984 11 AKTFNQHQALHAVDLNIHHG--EMVALLGPSGSGKSTLLRHLSGLITGDKS-AGSHIELLGRTVQREGRLARDIRKSRAN 87 (262)
T ss_pred EEEeCCeEEEecceEEEcCC--cEEEEECCCCCCHHHHHHHHhccCCCCCC-CceEEEECCEecccccccchhHHHHHhh
Confidence 56788889999999999999 99999999999999999999999863210 12333322211000 000234
Q ss_pred EEEEEeCCCCcCCCCCch
Q 038053 74 VVNVIDTPGLFDSSAGSE 91 (231)
Q Consensus 74 ~~~l~Dtpg~~~~~~~~~ 91 (231)
..++++.|.+++..+..+
T Consensus 88 i~~~~q~~~~~~~~tv~e 105 (262)
T PRK09984 88 TGYIFQQFNLVNRLSVLE 105 (262)
T ss_pred eEEEccccccccCCcHHH
Confidence 678888888877544433
No 275
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.15 E-value=2.8e-11 Score=98.39 Aligned_cols=45 Identities=31% Similarity=0.418 Sum_probs=42.0
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
++.|+++.++++++|++++| .+++|+|+||||||||+++|+|...
T Consensus 11 ~~~~~~~~vl~~vs~~i~~G--e~~~I~G~NGsGKSTLl~~i~Gl~~ 55 (251)
T PRK09544 11 SVSFGQRRVLSDVSLELKPG--KILTLLGPNGAGKSTLVRVVLGLVA 55 (251)
T ss_pred EEEECCceEEEeEEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56777788999999999999 9999999999999999999999976
No 276
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=1.2e-09 Score=91.31 Aligned_cols=89 Identities=19% Similarity=0.199 Sum_probs=71.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEee-----------------CCcEEEEEeCCCCcCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLK-----------------DGQVVNVIDTPGLFDS 86 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~l~Dtpg~~~~ 86 (231)
..+||||.||+|||||||+|+..... . .+.|.+|.++..+..... ....+-++|.+|+-++
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~-~-aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G 80 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAE-I-ANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG 80 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCcc-c-cCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence 68999999999999999999998842 2 468888888776653321 1234678999999999
Q ss_pred CCCchHHHHHHHHHHhhhcCCccEEEEEEECC
Q 038053 87 SAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVR 118 (231)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~ 118 (231)
.+..+.++..++..+.. +|++++||++.
T Consensus 81 As~GeGLGNkFL~~IRe----vdaI~hVVr~f 108 (372)
T COG0012 81 ASKGEGLGNKFLDNIRE----VDAIIHVVRCF 108 (372)
T ss_pred cccCCCcchHHHHhhhh----cCeEEEEEEec
Confidence 99999999999887754 59999999986
No 277
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.14 E-value=3.6e-11 Score=97.86 Aligned_cols=89 Identities=17% Similarity=0.110 Sum_probs=60.2
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc-ccccCCCCcceeeeeee-----EEeeCCcEE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF-KASADSSGVTKTCEMKT-----TVLKDGQVV 75 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~-~~~~~~~~~t~~~~~~~-----~~~~~~~~~ 75 (231)
+++|+++.+++++++++++| .+++|+|+||||||||+++|+|...+ ...+..|.++....... .........
T Consensus 11 ~~~~~~~~~l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~ 88 (252)
T PRK14256 11 NVHFGKNHAVKDVSMDFPEN--SVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVG 88 (252)
T ss_pred EEEeCCeeEEecceEEEcCC--CEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEE
Confidence 56788888999999999999 99999999999999999999998641 00011232332221110 001134567
Q ss_pred EEEeCCCCcCCCCCchH
Q 038053 76 NVIDTPGLFDSSAGSEF 92 (231)
Q Consensus 76 ~l~Dtpg~~~~~~~~~~ 92 (231)
++++.+.+++..+..++
T Consensus 89 ~~~q~~~~~~~~tv~en 105 (252)
T PRK14256 89 MVFQKPNPFPAMSIYDN 105 (252)
T ss_pred EEecCCCCCCcCcHHHH
Confidence 88998888775554433
No 278
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.14 E-value=9.4e-10 Score=83.67 Aligned_cols=137 Identities=15% Similarity=0.093 Sum_probs=76.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEe-eCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
+|+++|.+|||||||+|.+++...... ..+.. .......... .....+.++||||..... .+ ...
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~l~~~D~~g~~~~~--------~~---~~~ 67 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFPTE--YVPTV-FDNYSATVTVDGKQVNLGLWDTAGQEEYD--------RL---RPL 67 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCC--CCCce-eeeeEEEEEECCEEEEEEEEeCCCccccc--------cc---chh
Confidence 799999999999999999998864211 11111 1111111111 123457799999976421 01 112
Q ss_pred hcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhhH--------------------HHHHhhcc
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRGA--------------------TELRDQQA 154 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~--------------------~~l~~~~~ 154 (231)
.+..+|++++++|.++..+..... .....|++ .+.++.|... ..+....+
T Consensus 68 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 146 (171)
T cd00157 68 SYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPII-LVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIG 146 (171)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEE-EEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhC
Confidence 236789999999998432222211 12234443 2333333110 11111111
Q ss_pred --chhhhhhhhHhhHHHHHHHHHH
Q 038053 155 --EVDSLKEYSKQEISKLMGQMQE 176 (231)
Q Consensus 155 --~i~~is~~~~~~i~~l~~~i~~ 176 (231)
+++.+|+.++.|+.+++..+..
T Consensus 147 ~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 147 AIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred CeEEEEeecCCCCCHHHHHHHHhh
Confidence 5677899999999999887653
No 279
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.14 E-value=2.2e-11 Score=99.96 Aligned_cols=83 Identities=19% Similarity=0.100 Sum_probs=57.4
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcccc-ccCCCCcceeeeeee-----EEeeCCcEE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKA-SADSSGVTKTCEMKT-----TVLKDGQVV 75 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~-~~~~~~~t~~~~~~~-----~~~~~~~~~ 75 (231)
++.|+++.+|+++++++.+| .+++|+|+||||||||+++|+|...+.. .+..|.++....... .........
T Consensus 26 ~~~~~~~~il~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~ 103 (267)
T PRK14235 26 SVFYGEKQALFDVDLDIPEK--TVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVG 103 (267)
T ss_pred EEEECCEEEEEEEEEEEcCC--CEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceE
Confidence 56778888999999999999 9999999999999999999999875310 012333333221110 000123467
Q ss_pred EEEeCCCCcCC
Q 038053 76 NVIDTPGLFDS 86 (231)
Q Consensus 76 ~l~Dtpg~~~~ 86 (231)
++++.|.+++.
T Consensus 104 ~v~q~~~~~~~ 114 (267)
T PRK14235 104 MVFQKPNPFPK 114 (267)
T ss_pred EEecCCCCCCC
Confidence 88888887763
No 280
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.14 E-value=2.8e-11 Score=98.80 Aligned_cols=89 Identities=15% Similarity=0.066 Sum_probs=59.9
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcccc-ccCCCCcceeeeeee-----EEeeCCcEE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKA-SADSSGVTKTCEMKT-----TVLKDGQVV 75 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~-~~~~~~~t~~~~~~~-----~~~~~~~~~ 75 (231)
++.|++..+|++++|++.+| .+++|+|+||||||||+++|+|...+.. .+..|.++....... .........
T Consensus 11 ~~~~~~~~~l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~ 88 (258)
T PRK14241 11 NIYYGSFHAVEDVNLNIEPR--SVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIG 88 (258)
T ss_pred EEEECCEeeeeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceE
Confidence 56787788999999999999 9999999999999999999999875210 012333332221100 000124467
Q ss_pred EEEeCCCCcCCCCCchH
Q 038053 76 NVIDTPGLFDSSAGSEF 92 (231)
Q Consensus 76 ~l~Dtpg~~~~~~~~~~ 92 (231)
++++.+.+++..+..++
T Consensus 89 ~~~q~~~~~~~~tv~~n 105 (258)
T PRK14241 89 MVFQRPNPFPTMSIRDN 105 (258)
T ss_pred EEccccccCCCCcHHHH
Confidence 78888887765554443
No 281
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.14 E-value=1e-09 Score=86.17 Aligned_cols=140 Identities=14% Similarity=0.115 Sum_probs=78.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
.+|+++|++|+|||||++.+.+...... ..+....+........ .+ ..+.++||||... +....
T Consensus 7 ~kivvvG~~~vGKTsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~l~l~D~~G~~~-----------~~~~~ 72 (199)
T cd04110 7 FKLLIIGDSGVGKSSLLLRFADNTFSGS--YITTIGVDFKIRTVEI-NGERVKLQIWDTAGQER-----------FRTIT 72 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCC--cCccccceeEEEEEEE-CCEEEEEEEEeCCCchh-----------HHHHH
Confidence 7899999999999999999988753111 1111111111112222 22 3567899999532 11112
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH--------hcCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhhhh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------ANGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKEYS 163 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~~~ 163 (231)
...+..++++++|+|+++.-+..+.. .....|++ .+.++.|.. ...+....+ +++.+|+.+
T Consensus 73 ~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~pii-vVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 151 (199)
T cd04110 73 STYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKV-LVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKE 151 (199)
T ss_pred HHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEE-EEEECcccccccccCHHHHHHHHHHcCCEEEEEECCC
Confidence 23346689999999998543322211 11122222 222332210 011222222 577889999
Q ss_pred HhhHHHHHHHHHHHH
Q 038053 164 KQEISKLMGQMQESY 178 (231)
Q Consensus 164 ~~~i~~l~~~i~~~~ 178 (231)
|.|+.+++..+...+
T Consensus 152 ~~gi~~lf~~l~~~~ 166 (199)
T cd04110 152 NINVEEMFNCITELV 166 (199)
T ss_pred CcCHHHHHHHHHHHH
Confidence 999999999887754
No 282
>PTZ00369 Ras-like protein; Provisional
Probab=99.14 E-value=1.4e-09 Score=84.61 Aligned_cols=138 Identities=19% Similarity=0.182 Sum_probs=77.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeee-eeEEee-CCcEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEM-KTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
.+|+++|.+|||||||++.+++..... ....|..... ...... ....+.++||||..... .+.
T Consensus 6 ~Ki~iiG~~~~GKTsLi~~~~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~l~--- 70 (189)
T PTZ00369 6 YKLVVVGGGGVGKSALTIQFIQNHFID----EYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYS--------AMR--- 70 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCc----CcCCchhhEEEEEEEECCEEEEEEEEeCCCCccch--------hhH---
Confidence 789999999999999999999765311 1111111111 111120 12346689999975421 111
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH--------h--cCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------A--NGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKE 161 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~--~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~ 161 (231)
...+..+|++++|+|.++.-+..... . ....|++ .+.++.+.. ...+....+ +++.+||
T Consensus 71 ~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~pii-iv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sa 149 (189)
T PTZ00369 71 DQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMI-LVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSA 149 (189)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECcccccccccCHHHHHHHHHHhCCEEEEeeC
Confidence 12345789999999998543322211 1 1122332 222332210 012222222 6788999
Q ss_pred hhHhhHHHHHHHHHHH
Q 038053 162 YSKQEISKLMGQMQES 177 (231)
Q Consensus 162 ~~~~~i~~l~~~i~~~ 177 (231)
++|.|+.+++..+.+.
T Consensus 150 k~~~gi~~~~~~l~~~ 165 (189)
T PTZ00369 150 KQRVNVDEAFYELVRE 165 (189)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999988777653
No 283
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.14 E-value=3.6e-11 Score=96.18 Aligned_cols=45 Identities=24% Similarity=0.237 Sum_probs=42.6
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
+++|++.+++++++|++++| .+++|+|+||||||||+++|+|...
T Consensus 29 ~~~~~~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~ 73 (224)
T cd03220 29 KGEVGEFWALKDVSFEVPRG--ERIGLIGRNGAGKSTLLRLLAGIYP 73 (224)
T ss_pred hhhcCCeEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56788999999999999999 9999999999999999999999876
No 284
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.14 E-value=2.4e-11 Score=100.04 Aligned_cols=46 Identities=20% Similarity=0.190 Sum_probs=41.6
Q ss_pred CCCCC-CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053 2 SSGMG-ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF 49 (231)
Q Consensus 2 ~~~~~-~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~ 49 (231)
++.|+ ++.++++++|++.+| .+++|+|+||||||||+++|+|...+
T Consensus 13 ~~~~~~~~~il~~vsl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p 59 (272)
T PRK15056 13 TVTWRNGHTALRDASFTVPGG--SIAALVGVNGSGKSTLFKALMGFVRL 59 (272)
T ss_pred EEEecCCcEEEEeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 45674 578999999999999 99999999999999999999999873
No 285
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.14 E-value=3.3e-11 Score=107.42 Aligned_cols=84 Identities=13% Similarity=0.082 Sum_probs=59.2
Q ss_pred CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE----EeeCCcEEE
Q 038053 1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT----VLKDGQVVN 76 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~ 76 (231)
+++.|++..++++++|++.+| .+++|+|+||||||||+++|+|...+ ..|.+......... ........+
T Consensus 10 l~~~~~~~~~l~~is~~i~~G--e~~~l~G~NGsGKSTLl~~l~G~~~p----~~G~i~~~g~~~~~~~~~~~~~~~i~~ 83 (501)
T PRK10762 10 IDKAFPGVKALSGAALNVYPG--RVMALVGENGAGKSTMMKVLTGIYTR----DAGSILYLGKEVTFNGPKSSQEAGIGI 83 (501)
T ss_pred eEEEeCCeEEeeeeeEEEcCC--eEEEEECCCCCCHHHHHHHHhCCCCC----CCcEEEECCEECCCCCHHHHHhCCEEE
Confidence 356788888999999999999 99999999999999999999999873 34433332211000 000234677
Q ss_pred EEeCCCCcCCCCCc
Q 038053 77 VIDTPGLFDSSAGS 90 (231)
Q Consensus 77 l~Dtpg~~~~~~~~ 90 (231)
+++.|.+++..++.
T Consensus 84 v~q~~~~~~~~tv~ 97 (501)
T PRK10762 84 IHQELNLIPQLTIA 97 (501)
T ss_pred EEcchhccCCCcHH
Confidence 88887776654443
No 286
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.14 E-value=6.8e-11 Score=91.23 Aligned_cols=78 Identities=21% Similarity=0.198 Sum_probs=53.6
Q ss_pred CCCCCCc--ccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-E-EeeCCcEEEE
Q 038053 2 SSGMGER--VIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-T-VLKDGQVVNV 77 (231)
Q Consensus 2 ~~~~~~~--~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-~-~~~~~~~~~l 77 (231)
++.|++. +++++++|++++| .+++|+|+||+|||||+++|+|...+ ..|.+........ . ........++
T Consensus 7 ~~~~~~~~~~~l~~i~~~i~~G--e~~~i~G~nGsGKStLl~~l~G~~~~----~~G~i~~~g~~~~~~~~~~~~~i~~~ 80 (178)
T cd03247 7 SFSYPEQEQQVLKNLSLELKQG--EKIALLGRSGSGKSTLLQLLTGDLKP----QQGEITLDGVPVSDLEKALSSLISVL 80 (178)
T ss_pred EEEeCCCCccceEEEEEEEcCC--CEEEEECCCCCCHHHHHHHHhccCCC----CCCEEEECCEEHHHHHHHHHhhEEEE
Confidence 4556554 7999999999999 99999999999999999999999873 3333332211000 0 0012345667
Q ss_pred EeCCCCcC
Q 038053 78 IDTPGLFD 85 (231)
Q Consensus 78 ~Dtpg~~~ 85 (231)
.+.|.+++
T Consensus 81 ~q~~~~~~ 88 (178)
T cd03247 81 NQRPYLFD 88 (178)
T ss_pred ccCCeeec
Confidence 77776654
No 287
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.13 E-value=6.7e-11 Score=95.38 Aligned_cols=45 Identities=20% Similarity=0.095 Sum_probs=41.8
Q ss_pred CCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053 3 SGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF 49 (231)
Q Consensus 3 ~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~ 49 (231)
+.|+.+++|++++|++++| .+++|+|+||||||||+++|+|...+
T Consensus 29 ~~~~~~~il~~vs~~i~~G--e~~~i~G~NGsGKSTLl~~i~Gl~~p 73 (236)
T cd03267 29 RKYREVEALKGISFTIEKG--EIVGFIGPNGAGKTTTLKILSGLLQP 73 (236)
T ss_pred cccCCeeeeeceeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 4678889999999999999 99999999999999999999999773
No 288
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.13 E-value=2.3e-10 Score=87.07 Aligned_cols=80 Identities=15% Similarity=0.199 Sum_probs=51.0
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhhc
Q 038053 26 VVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAK 105 (231)
Q Consensus 26 i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~ 105 (231)
|+++|.+|||||||++.+++..... ....|.......... .+..+.+.||||..... ......+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~----~~~pt~g~~~~~i~~-~~~~l~i~Dt~G~~~~~-----------~~~~~~~ 65 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLE----SVVPTTGFNSVAIPT-QDAIMELLEIGGSQNLR-----------KYWKRYL 65 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcc----cccccCCcceEEEee-CCeEEEEEECCCCcchh-----------HHHHHHH
Confidence 7899999999999999999874311 111111111122222 56678899999965311 1112334
Q ss_pred CCccEEEEEEECCCCC
Q 038053 106 GGIHAVLVVFSVRSRF 121 (231)
Q Consensus 106 ~~~~~il~vvd~~~~~ 121 (231)
..+|++++|+|.++..
T Consensus 66 ~~ad~ii~V~D~t~~~ 81 (164)
T cd04162 66 SGSQGLIFVVDSADSE 81 (164)
T ss_pred hhCCEEEEEEECCCHH
Confidence 6789999999998543
No 289
>PLN03118 Rab family protein; Provisional
Probab=99.13 E-value=9.3e-10 Score=87.15 Aligned_cols=141 Identities=12% Similarity=0.129 Sum_probs=79.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEee-CCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG 102 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~ 102 (231)
.+|+++|++|+|||||++.+++...... .+.............. ....+.++||||..... .+ ..
T Consensus 15 ~kv~ivG~~~vGKTsli~~l~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~--------~~---~~ 80 (211)
T PLN03118 15 FKILLIGDSGVGKSSLLVSFISSSVEDL---APTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFR--------TL---TS 80 (211)
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCc---CCCceeEEEEEEEEECCEEEEEEEEECCCchhhH--------HH---HH
Confidence 7999999999999999999998754211 1111122222222221 12467899999965411 11 12
Q ss_pred hhcCCccEEEEEEECCCCCCHHHHH---------h--cCCCCcHHHHHHHHHhh------H---HHHHhhcc-chhhhhh
Q 038053 103 LAKGGIHAVLVVFSVRSRFSQEEEA---------A--NGGQPYTDEFLAELKRG------A---TELRDQQA-EVDSLKE 161 (231)
Q Consensus 103 ~~~~~~~~il~vvd~~~~~~~~~~~---------~--~~~~~~~~~~~~~~~~~------~---~~l~~~~~-~i~~is~ 161 (231)
..+..+|++++|+|+++.-+..+.. . ....+.+ .+.++.|.. . ..+....+ +++.+|+
T Consensus 81 ~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~i-lv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SA 159 (211)
T PLN03118 81 SYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKM-LVGNKVDRESERDVSREEGMALAKEHGCLFLECSA 159 (211)
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECccccccCccCHHHHHHHHHHcCCEEEEEeC
Confidence 2346779999999998532222211 1 1112222 223333310 0 11111111 5677899
Q ss_pred hhHhhHHHHHHHHHHHHH
Q 038053 162 YSKQEISKLMGQMQESYE 179 (231)
Q Consensus 162 ~~~~~i~~l~~~i~~~~~ 179 (231)
+++.|+++++..+...+.
T Consensus 160 k~~~~v~~l~~~l~~~~~ 177 (211)
T PLN03118 160 KTRENVEQCFEELALKIM 177 (211)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999988887653
No 290
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.13 E-value=8.7e-10 Score=86.63 Aligned_cols=138 Identities=12% Similarity=0.064 Sum_probs=79.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcce--eeeeeeEEee--CCcEEEEEeCCCCcCCCCCchHHHHHHHHH
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTK--TCEMKTTVLK--DGQVVNVIDTPGLFDSSAGSEFVGKEIVKR 100 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~--~~~~~~~~~~--~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~ 100 (231)
+|+++|.+|||||||++.+++.... .....|. +......... ....+.+.||||... +...
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~----~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~-----------~~~~ 66 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFS----QHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQER-----------FGGM 66 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC----CCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchh-----------hhhh
Confidence 6999999999999999999886531 1112222 2112222221 234577899999642 1111
Q ss_pred HhhhcCCccEEEEEEECCCCCCHHHHH---------h----cCCCCcHHHHHHHHHhh---------HHHHHhhcc--ch
Q 038053 101 IGLAKGGIHAVLVVFSVRSRFSQEEEA---------A----NGGQPYTDEFLAELKRG---------ATELRDQQA--EV 156 (231)
Q Consensus 101 ~~~~~~~~~~il~vvd~~~~~~~~~~~---------~----~~~~~~~~~~~~~~~~~---------~~~l~~~~~--~i 156 (231)
....+..+|++++|+|+++.-+-.... . ....|++ .+.++.|.. ...+....+ ++
T Consensus 67 ~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~pii-lv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 145 (201)
T cd04107 67 TRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCL-LLANKCDLKKRLAKDGEQMDQFCKENGFIGW 145 (201)
T ss_pred HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEE-EEEECCCcccccccCHHHHHHHHHHcCCceE
Confidence 223447889999999998543222111 0 1222333 333443321 012222222 56
Q ss_pred hhhhhhhHhhHHHHHHHHHHHH
Q 038053 157 DSLKEYSKQEISKLMGQMQESY 178 (231)
Q Consensus 157 ~~is~~~~~~i~~l~~~i~~~~ 178 (231)
+.+|++++.|+++++..+....
T Consensus 146 ~e~Sak~~~~v~e~f~~l~~~l 167 (201)
T cd04107 146 FETSAKEGINIEEAMRFLVKNI 167 (201)
T ss_pred EEEeCCCCCCHHHHHHHHHHHH
Confidence 7789999999999888877654
No 291
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.13 E-value=9.3e-10 Score=83.57 Aligned_cols=139 Identities=17% Similarity=0.138 Sum_probs=77.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
.+|+++|.+|+|||||+|.+++...........+.+. ........ ....+.++||||..... .+. ..
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~-~~~~l~i~Dt~G~~~~~--------~~~---~~ 68 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSK-NICTLQITDTTGSHQFP--------AMQ---RL 68 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECC-EEEEEEEEECCCCCcch--------HHH---HH
Confidence 5899999999999999999998653111011111111 11111111 23456799999976421 111 12
Q ss_pred hcCCccEEEEEEECCCCCCHHHHH--------hc----CCCCcHHHHHHHHHhhH---------HHHHhhcc-chhhhhh
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEEEA--------AN----GGQPYTDEFLAELKRGA---------TELRDQQA-EVDSLKE 161 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~~~--------~~----~~~~~~~~~~~~~~~~~---------~~l~~~~~-~i~~is~ 161 (231)
.+..+|++++|+|+++.-+..... .. ...|++ .+.++.|... ..+....+ +++.+||
T Consensus 69 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~pii-lv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA 147 (165)
T cd04140 69 SISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIM-LVGNKCDESHKREVSSNEGAACATEWNCAFMETSA 147 (165)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEE-EEEECccccccCeecHHHHHHHHHHhCCcEEEeec
Confidence 335779999999998544332211 11 223433 3344433110 01111111 5677899
Q ss_pred hhHhhHHHHHHHHHH
Q 038053 162 YSKQEISKLMGQMQE 176 (231)
Q Consensus 162 ~~~~~i~~l~~~i~~ 176 (231)
++|.|+.+++..+..
T Consensus 148 ~~g~~v~~~f~~l~~ 162 (165)
T cd04140 148 KTNHNVQELFQELLN 162 (165)
T ss_pred CCCCCHHHHHHHHHh
Confidence 999999999887754
No 292
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.13 E-value=4.5e-11 Score=102.33 Aligned_cols=86 Identities=20% Similarity=0.139 Sum_probs=65.0
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeee-----eeeE------Eee
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCE-----MKTT------VLK 70 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~-----~~~~------~~~ 70 (231)
.+.||...++++++|++++| .+++|+|+||||||||+++|+|... +..|.+..+.. .... ...
T Consensus 31 ~~~~g~~~~l~~vsf~i~~G--ei~~I~G~nGsGKSTLlr~L~Gl~~----p~~G~I~idG~~~~~~i~~~~~~~l~~~r 104 (382)
T TIGR03415 31 LDETGLVVGVANASLDIEEG--EICVLMGLSGSGKSSLLRAVNGLNP----VSRGSVLVKDGDGSIDVANCDAATLRRLR 104 (382)
T ss_pred HHhhCCEEEEEeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCC----CCCcEEEECCEecccccccCCHHHHHHHh
Confidence 46789999999999999999 9999999999999999999999987 34444443321 0000 000
Q ss_pred CCcEEEEEeCCCCcCCCCCchHH
Q 038053 71 DGQVVNVIDTPGLFDSSAGSEFV 93 (231)
Q Consensus 71 ~~~~~~l~Dtpg~~~~~~~~~~~ 93 (231)
.....++++.+++++..+..+++
T Consensus 105 ~~~i~~vfQ~~~l~p~~Tv~eNi 127 (382)
T TIGR03415 105 THRVSMVFQKFALMPWLTVEENV 127 (382)
T ss_pred cCCEEEEECCCcCCCCCcHHHHH
Confidence 24578899999999877666554
No 293
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.13 E-value=4.4e-11 Score=97.22 Aligned_cols=82 Identities=17% Similarity=0.081 Sum_probs=56.3
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcccc-ccCCCCcceeeeeeeE-----EeeCCcEE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKA-SADSSGVTKTCEMKTT-----VLKDGQVV 75 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~-~~~~~~~t~~~~~~~~-----~~~~~~~~ 75 (231)
++.|++++++++++|++.+| .+++|+|+||+|||||+++|+|...+.. .+..|.+......... ........
T Consensus 10 ~~~~~~~~~l~~i~~~i~~G--e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~ 87 (250)
T PRK14262 10 SAYYGEKKAVKNVTMKIFKN--QITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVG 87 (250)
T ss_pred EEEeCCceeEeeeeEeecCC--CEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEE
Confidence 56777788999999999999 9999999999999999999999865210 0122333322211000 00134567
Q ss_pred EEEeCCCCcC
Q 038053 76 NVIDTPGLFD 85 (231)
Q Consensus 76 ~l~Dtpg~~~ 85 (231)
++++.|.+++
T Consensus 88 ~~~q~~~~~~ 97 (250)
T PRK14262 88 MVFQKPTPFP 97 (250)
T ss_pred EEecCCccCc
Confidence 7888888775
No 294
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.13 E-value=3.4e-10 Score=86.22 Aligned_cols=138 Identities=17% Similarity=0.156 Sum_probs=76.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEee-CCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG 102 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~ 102 (231)
.+|+++|.+|||||||++.+++..... ...+++........... ....+.++||||..... .+ ..
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--------~~---~~ 67 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIE---SYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFT--------AM---RE 67 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc---ccCCcchheEEEEEEECCEEEEEEEEeCCCcccch--------hh---hH
Confidence 589999999999999999998765311 11111111111111120 12456789999965421 11 11
Q ss_pred hhcCCccEEEEEEECCCCCCHHHHH----------hcCCCCcHHHHHHHHHhhH---------HHHHhhcc--chhhhhh
Q 038053 103 LAKGGIHAVLVVFSVRSRFSQEEEA----------ANGGQPYTDEFLAELKRGA---------TELRDQQA--EVDSLKE 161 (231)
Q Consensus 103 ~~~~~~~~il~vvd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~---------~~l~~~~~--~i~~is~ 161 (231)
..+..++.++++++.++.-+..... .....|++ .+.++.|... ..+....+ +++.+||
T Consensus 68 ~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~pii-iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 146 (168)
T cd04177 68 LYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMV-LVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSA 146 (168)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEE-EEEEChhccccCccCHHHHHHHHHHcCCceEEEeeC
Confidence 2235678999999987432221111 12234443 2334443211 12222222 5778999
Q ss_pred hhHhhHHHHHHHHHH
Q 038053 162 YSKQEISKLMGQMQE 176 (231)
Q Consensus 162 ~~~~~i~~l~~~i~~ 176 (231)
+++.|+.+++..+..
T Consensus 147 ~~~~~i~~~f~~i~~ 161 (168)
T cd04177 147 RKRTNVDEVFIDLVR 161 (168)
T ss_pred CCCCCHHHHHHHHHH
Confidence 999999998888765
No 295
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.13 E-value=2.4e-10 Score=85.79 Aligned_cols=136 Identities=19% Similarity=0.177 Sum_probs=77.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeC--CcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG 102 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~ 102 (231)
+|+++|++|||||||+|.+++... .. ....++.......... . ...+.++|+||... +.....
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~-~~--~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~-----------~~~~~~ 65 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF-VE--EYDPTIEDSYRKTIVV-DGETYTLDILDTAGQEE-----------FSAMRD 65 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC-Cc--CcCCChhHeEEEEEEE-CCEEEEEEEEECCChHH-----------HHHHHH
Confidence 489999999999999999998763 11 1222222222222222 3 24567899999653 111122
Q ss_pred hhcCCccEEEEEEECCCCCCHHHHH--------hc--CCCCcHHHHHHHHHhh---------HHHHHhhc-cchhhhhhh
Q 038053 103 LAKGGIHAVLVVFSVRSRFSQEEEA--------AN--GGQPYTDEFLAELKRG---------ATELRDQQ-AEVDSLKEY 162 (231)
Q Consensus 103 ~~~~~~~~il~vvd~~~~~~~~~~~--------~~--~~~~~~~~~~~~~~~~---------~~~l~~~~-~~i~~is~~ 162 (231)
..+..+|++++++|+++..+..+.. .. ...|++ .+.++.+.. ...+.... .+++.+|+.
T Consensus 66 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 144 (160)
T cd00876 66 LYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIV-LVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAK 144 (160)
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE-EEEECCcccccceecHHHHHHHHHHcCCcEEEeccC
Confidence 2345679999999987432222211 11 133333 233333311 01222222 267889999
Q ss_pred hHhhHHHHHHHHHH
Q 038053 163 SKQEISKLMGQMQE 176 (231)
Q Consensus 163 ~~~~i~~l~~~i~~ 176 (231)
++.|+.+++..+..
T Consensus 145 ~~~~i~~l~~~l~~ 158 (160)
T cd00876 145 DNINIDEVFKLLVR 158 (160)
T ss_pred CCCCHHHHHHHHHh
Confidence 99999998887754
No 296
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.12 E-value=4.8e-11 Score=97.08 Aligned_cols=83 Identities=14% Similarity=0.073 Sum_probs=57.8
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccc-cCCCCcceeeeeee-----EEeeCCcEE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKAS-ADSSGVTKTCEMKT-----TVLKDGQVV 75 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~-~~~~~~t~~~~~~~-----~~~~~~~~~ 75 (231)
++.|+++.++++++|++.+| .+++|+|+||+|||||+++|+|...+..+ +..|.+........ .........
T Consensus 11 ~~~~~~~~il~~~s~~i~~G--~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~ 88 (251)
T PRK14249 11 NFFYHKHQVLKNINMDFPER--QITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVG 88 (251)
T ss_pred EEEECCeeEecceEEEEcCC--CEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEE
Confidence 45677788999999999999 99999999999999999999999764310 01233332221100 001134578
Q ss_pred EEEeCCCCcCC
Q 038053 76 NVIDTPGLFDS 86 (231)
Q Consensus 76 ~l~Dtpg~~~~ 86 (231)
++++.|.+++.
T Consensus 89 ~v~q~~~~~~~ 99 (251)
T PRK14249 89 MVFQQPNPFPK 99 (251)
T ss_pred EEecCCccCcC
Confidence 88998887763
No 297
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.12 E-value=4.7e-11 Score=92.36 Aligned_cols=76 Identities=21% Similarity=0.227 Sum_probs=56.5
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee------------EEe
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT------------TVL 69 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~------------~~~ 69 (231)
+..||+..+|+++++.++++ .+.|||||+|||||||+++|........ +......+.. ...
T Consensus 14 ~~yYg~~~aL~~i~l~i~~~--~VTAlIGPSGcGKST~LR~lNRmndl~~-----~~r~~G~v~~~g~ni~~~~~d~~~l 86 (253)
T COG1117 14 NLYYGDKHALKDINLDIPKN--KVTALIGPSGCGKSTLLRCLNRMNDLIP-----GARVEGEVLLDGKNIYDPKVDVVEL 86 (253)
T ss_pred eEEECchhhhccCceeccCC--ceEEEECCCCcCHHHHHHHHHhhcccCc-----CceEEEEEEECCeeccCCCCCHHHH
Confidence 45689999999999999999 9999999999999999999887765322 2222221110 111
Q ss_pred eCCcEEEEEeCCCCcC
Q 038053 70 KDGQVVNVIDTPGLFD 85 (231)
Q Consensus 70 ~~~~~~~l~Dtpg~~~ 85 (231)
+.+.+++++-|..++
T Consensus 87 -Rr~vGMVFQkPnPFp 101 (253)
T COG1117 87 -RRRVGMVFQKPNPFP 101 (253)
T ss_pred -HHHheeeccCCCCCC
Confidence 356788999999887
No 298
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.12 E-value=4e-10 Score=85.84 Aligned_cols=138 Identities=17% Similarity=0.132 Sum_probs=78.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEE--e-eCCcEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTV--L-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~--~-~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
+|+++|.+|||||||++.++..... .....|......... . .....+.+.||||...... +.
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~~--- 66 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEFE----KKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGG--------LR--- 66 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC----CCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhcc--------cc---
Confidence 7999999999999999999854421 111122221221111 1 1235677899999653211 11
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH--------hcCCCCcHHHHHHHHHhhH-------HHHHhhc-cchhhhhhhhHh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------ANGGQPYTDEFLAELKRGA-------TELRDQQ-AEVDSLKEYSKQ 165 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~-------~~l~~~~-~~i~~is~~~~~ 165 (231)
...+..+|++++|+|.++..+..... .....|++ .+.++.+... ..+.... .+++.+||++|.
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~pii-iv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 145 (166)
T cd00877 67 DGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIV-LCGNKVDIKDRKVKAKQITFHRKKNLQYYEISAKSNY 145 (166)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEE-EEEEchhcccccCCHHHHHHHHHcCCEEEEEeCCCCC
Confidence 12235789999999998543332221 11134443 2333433110 1121111 257789999999
Q ss_pred hHHHHHHHHHHHH
Q 038053 166 EISKLMGQMQESY 178 (231)
Q Consensus 166 ~i~~l~~~i~~~~ 178 (231)
|+++++..+....
T Consensus 146 ~v~~~f~~l~~~~ 158 (166)
T cd00877 146 NFEKPFLWLARKL 158 (166)
T ss_pred ChHHHHHHHHHHH
Confidence 9999998887543
No 299
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.12 E-value=1.4e-10 Score=88.88 Aligned_cols=55 Identities=31% Similarity=0.410 Sum_probs=43.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 83 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~ 83 (231)
.+++++|.||+|||||+|+|+|.....++ ..+|+|+..+... .+..+.++||||+
T Consensus 118 ~~~~~vG~pnvGKSslin~l~~~~~~~~~-~~pg~T~~~~~~~----~~~~~~l~DtPGi 172 (172)
T cd04178 118 ITVGVVGFPNVGKSSLINSLKRSRACNVG-ATPGVTKSMQEVH----LDKKVKLLDSPGI 172 (172)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCcccceec-CCCCeEcceEEEE----eCCCEEEEECcCC
Confidence 68999999999999999999998876554 5677777544332 2345789999995
No 300
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.12 E-value=2.2e-10 Score=87.34 Aligned_cols=139 Identities=16% Similarity=0.070 Sum_probs=76.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEe-eCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG 102 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~ 102 (231)
.+|+++|++|+|||||++.+++...... ..+............. .....+.+.||||... +.....
T Consensus 6 ~ki~vvG~~~~GKTsli~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~-----------~~~~~~ 72 (170)
T cd04116 6 LKVILLGDGGVGKSSLMNRYVTNKFDTQ--LFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQER-----------FRSLRT 72 (170)
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCcC--cCCceeeEEEEEEEEECCeEEEEEEEeCCChHH-----------HHHhHH
Confidence 7899999999999999999987653211 1111111111112222 1223456789999432 112222
Q ss_pred hhcCCccEEEEEEECCCCCCHHHHH---------h----cCCCCcHHHHHHHHHhh--------HHHHHhhcc--chhhh
Q 038053 103 LAKGGIHAVLVVFSVRSRFSQEEEA---------A----NGGQPYTDEFLAELKRG--------ATELRDQQA--EVDSL 159 (231)
Q Consensus 103 ~~~~~~~~il~vvd~~~~~~~~~~~---------~----~~~~~~~~~~~~~~~~~--------~~~l~~~~~--~i~~i 159 (231)
..+..+|++++++|.++.-+..... . ....|++ .+.++.|.. ...+....+ +++.+
T Consensus 73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~ 151 (170)
T cd04116 73 PFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFV-VLGNKNDIPERQVSTEEAQAWCRENGDYPYFET 151 (170)
T ss_pred HHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEE-EEEECccccccccCHHHHHHHHHHCCCCeEEEE
Confidence 3446789999999987432222111 0 1123333 233333310 012222222 56778
Q ss_pred hhhhHhhHHHHHHHHHH
Q 038053 160 KEYSKQEISKLMGQMQE 176 (231)
Q Consensus 160 s~~~~~~i~~l~~~i~~ 176 (231)
|+++|.|+.+++..+.+
T Consensus 152 Sa~~~~~v~~~~~~~~~ 168 (170)
T cd04116 152 SAKDATNVAAAFEEAVR 168 (170)
T ss_pred ECCCCCCHHHHHHHHHh
Confidence 99999999998877654
No 301
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.12 E-value=4.6e-11 Score=97.56 Aligned_cols=88 Identities=18% Similarity=0.080 Sum_probs=58.8
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcccc-ccCCCCcceeeeeee-E----EeeCCcEE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKA-SADSSGVTKTCEMKT-T----VLKDGQVV 75 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~-~~~~~~~t~~~~~~~-~----~~~~~~~~ 75 (231)
+++|+++.+|++++|++++| .+++|+|+||||||||+++|+|...+.. .+..|.+........ . ........
T Consensus 19 ~~~~~~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~ 96 (258)
T PRK14268 19 NLWYGEKQALKNVSMQIPKN--SVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVG 96 (258)
T ss_pred EEEeCCeeeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEE
Confidence 56778888999999999999 9999999999999999999999875210 012232222211100 0 00123567
Q ss_pred EEEeCCCCcCCCCCchH
Q 038053 76 NVIDTPGLFDSSAGSEF 92 (231)
Q Consensus 76 ~l~Dtpg~~~~~~~~~~ 92 (231)
++++.|.+++ .+..++
T Consensus 97 ~v~q~~~~~~-~tv~en 112 (258)
T PRK14268 97 MVFQKPNPFP-MSIYDN 112 (258)
T ss_pred EEecCCccCc-ccHHHH
Confidence 8888888776 444433
No 302
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.12 E-value=4.4e-10 Score=86.03 Aligned_cols=139 Identities=16% Similarity=0.089 Sum_probs=78.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcce--eeeeeeEEe-eCCcEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTK--TCEMKTTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~--~~~~~~~~~-~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
+|++||.+|||||||++.+++..-. .....|. ......... .....+.+.||||... +....
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~----~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~~ 66 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFD----KNYKATIGVDFEMERFEILGVPFSLQLWDTAGQER-----------FKCIA 66 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC----CCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHH-----------HHhhH
Confidence 6899999999999999999987531 1212222 211111222 1134678999999643 11122
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH--------hc-CCCCcHHHHHHHHHhhH-----------HHHHhhcc-chhhhh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------AN-GGQPYTDEFLAELKRGA-----------TELRDQQA-EVDSLK 160 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~~-----------~~l~~~~~-~i~~is 160 (231)
...+..+|++++|+|+++.-+..... .. ...+.+..+.++.|... ..+...++ ++..+|
T Consensus 67 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~S 146 (170)
T cd04108 67 STYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVS 146 (170)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEE
Confidence 33457889999999998532221111 11 11122223334433110 11222222 556789
Q ss_pred hhhHhhHHHHHHHHHHHH
Q 038053 161 EYSKQEISKLMGQMQESY 178 (231)
Q Consensus 161 ~~~~~~i~~l~~~i~~~~ 178 (231)
+.+|.|+++++..+....
T Consensus 147 a~~g~~v~~lf~~l~~~~ 164 (170)
T cd04108 147 ALSGENVREFFFRVAALT 164 (170)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999998887654
No 303
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.12 E-value=4.5e-11 Score=97.16 Aligned_cols=82 Identities=16% Similarity=0.063 Sum_probs=56.0
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccc-cccCCCCcceeeeeeeE-----EeeCCcEE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFK-ASADSSGVTKTCEMKTT-----VLKDGQVV 75 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~-~~~~~~~~t~~~~~~~~-----~~~~~~~~ 75 (231)
++.|+++.++++++|++.+| .+++|+|+||||||||+++|+|...+. ..+..|.++........ ........
T Consensus 10 ~~~~~~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 87 (250)
T PRK14240 10 DLFYGDFQALKKINLDIEEN--QVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVG 87 (250)
T ss_pred EEEECCceeeecceEEEcCC--CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEE
Confidence 56777788999999999999 999999999999999999999975421 00122333322211100 00133467
Q ss_pred EEEeCCCCcC
Q 038053 76 NVIDTPGLFD 85 (231)
Q Consensus 76 ~l~Dtpg~~~ 85 (231)
++++.|.+++
T Consensus 88 ~~~q~~~~~~ 97 (250)
T PRK14240 88 MVFQQPNPFP 97 (250)
T ss_pred EEecCCccCc
Confidence 8888888775
No 304
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.12 E-value=5e-11 Score=102.71 Aligned_cols=85 Identities=13% Similarity=0.042 Sum_probs=61.3
Q ss_pred CCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-EE------eeCCcEE
Q 038053 3 SGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-TV------LKDGQVV 75 (231)
Q Consensus 3 ~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-~~------~~~~~~~ 75 (231)
+.|+...++++++|++++| .+++|+|+||||||||+++|+|...+ ..|.+........ .. .......
T Consensus 36 ~~~~~~~~L~~isl~i~~G--ei~~LvG~NGsGKSTLLr~I~Gl~~p----~sG~I~i~G~~i~~~~~~~l~~~~~~~ig 109 (400)
T PRK10070 36 EKTGLSLGVKDASLAIEEG--EIFVIMGLSGSGKSTMVRLLNRLIEP----TRGQVLIDGVDIAKISDAELREVRRKKIA 109 (400)
T ss_pred hhcCCeEEEEeEEEEEcCC--CEEEEECCCCchHHHHHHHHHcCCCC----CCCEEEECCEECCcCCHHHHHHHHhCCEE
Confidence 4566666899999999999 99999999999999999999999873 4443333221100 00 0023578
Q ss_pred EEEeCCCCcCCCCCchHH
Q 038053 76 NVIDTPGLFDSSAGSEFV 93 (231)
Q Consensus 76 ~l~Dtpg~~~~~~~~~~~ 93 (231)
++++.+++++..+..+++
T Consensus 110 yv~Q~~~l~~~~Tv~enl 127 (400)
T PRK10070 110 MVFQSFALMPHMTVLDNT 127 (400)
T ss_pred EEECCCcCCCCCCHHHHH
Confidence 899999998876665544
No 305
>PRK12736 elongation factor Tu; Reviewed
Probab=99.12 E-value=3.3e-10 Score=97.95 Aligned_cols=93 Identities=14% Similarity=0.173 Sum_probs=61.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCccccc--------------cCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCC
Q 038053 23 KRTVVLLGRTGNGKSATGNSILGRKAFKAS--------------ADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSA 88 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~--------------~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~ 88 (231)
..+|+++|+.++|||||++.|++....... ....+.|.+........ .+..+.++||||..
T Consensus 12 ~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~-~~~~i~~iDtPGh~---- 86 (394)
T PRK12736 12 HVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYET-EKRHYAHVDCPGHA---- 86 (394)
T ss_pred eeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecC-CCcEEEEEECCCHH----
Confidence 378999999999999999999974211000 11345665554333333 56678899999943
Q ss_pred CchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH
Q 038053 89 GSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA 127 (231)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~ 127 (231)
++...+......+|++++|+|+..++...+..
T Consensus 87 -------~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~ 118 (394)
T PRK12736 87 -------DYVKNMITGAAQMDGAILVVAATDGPMPQTRE 118 (394)
T ss_pred -------HHHHHHHHHHhhCCEEEEEEECCCCCchhHHH
Confidence 22233333446789999999998776665544
No 306
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.12 E-value=4.8e-11 Score=97.25 Aligned_cols=87 Identities=14% Similarity=0.024 Sum_probs=58.5
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccc-cCCCCcceeeeeee-----EEeeCCcEE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKAS-ADSSGVTKTCEMKT-----TVLKDGQVV 75 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~-~~~~~~t~~~~~~~-----~~~~~~~~~ 75 (231)
++.|++..++++++|++.+| .+++|+|+||||||||+++|+|...+..+ +..|.+........ .........
T Consensus 14 ~~~~~~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~ 91 (254)
T PRK14273 14 NLFYTDFKALNNINIKILKN--SITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIG 91 (254)
T ss_pred EEEeCCceeecceeeEEcCC--CEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceE
Confidence 56778788999999999999 99999999999999999999999763210 01232222221100 001134567
Q ss_pred EEEeCCCCcCCCCCch
Q 038053 76 NVIDTPGLFDSSAGSE 91 (231)
Q Consensus 76 ~l~Dtpg~~~~~~~~~ 91 (231)
++++.|.++. .+..+
T Consensus 92 ~v~q~~~~~~-~tv~e 106 (254)
T PRK14273 92 MVFQTPNPFL-MSIYD 106 (254)
T ss_pred EEeecccccc-CcHHH
Confidence 8888887764 34333
No 307
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.12 E-value=4.6e-10 Score=85.73 Aligned_cols=140 Identities=13% Similarity=0.142 Sum_probs=76.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEee-CCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG 102 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~ 102 (231)
.+|+++|++|+|||||++.+++...... ..+....+......... ....+.+.||||.... ...+ ..
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~---~~ 70 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRFPER--TEATIGVDFRERTVEIDGERIKVQLWDTAGQERF-------RKSM---VQ 70 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCc--cccceeEEEEEEEEEECCeEEEEEEEeCCChHHH-------HHhh---HH
Confidence 5899999999999999999987653211 11111111111222221 1246778999995421 1111 22
Q ss_pred hhcCCccEEEEEEECCCCCCHHHHH----------hcCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhhh
Q 038053 103 LAKGGIHAVLVVFSVRSRFSQEEEA----------ANGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKEY 162 (231)
Q Consensus 103 ~~~~~~~~il~vvd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~~ 162 (231)
..+..+|++++|+|+++.-+..... .....|++ .+.++.|.. ...+..... +++.+|++
T Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-iv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~ 149 (170)
T cd04115 71 HYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRI-LVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAK 149 (170)
T ss_pred HhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEE-EEEECccchhhcCCCHHHHHHHHHHcCCcEEEEecc
Confidence 3346889999999998543332222 11223333 223333311 012222222 56668998
Q ss_pred h---HhhHHHHHHHHHH
Q 038053 163 S---KQEISKLMGQMQE 176 (231)
Q Consensus 163 ~---~~~i~~l~~~i~~ 176 (231)
+ +.++++++..+..
T Consensus 150 ~~~~~~~i~~~f~~l~~ 166 (170)
T cd04115 150 DPSENDHVEAIFMTLAH 166 (170)
T ss_pred CCcCCCCHHHHHHHHHH
Confidence 8 7788887766654
No 308
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.11 E-value=4.5e-11 Score=96.95 Aligned_cols=81 Identities=20% Similarity=0.091 Sum_probs=57.0
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE---EeeCCcEEEEE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT---VLKDGQVVNVI 78 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~l~ 78 (231)
++.|+++.++++++|++.+| .+++|+|+||+|||||+++|+|...+.. +..|.++........ ........+++
T Consensus 9 ~~~~~~~~~l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~-~~~G~i~~~g~~i~~~~~~~~~~~i~~~~ 85 (246)
T PRK14269 9 NLFYGKKQALFDINMQIEQN--KITALIGASGCGKSTFLRCFNRMNDKIA-KIDGLVEIEGKDVKNQDVVALRKNVGMVF 85 (246)
T ss_pred EEEECCEeeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcccCCCC-CCceEEEECCEecccCCHHHHhhhEEEEe
Confidence 56788888999999999999 9999999999999999999999864110 233433332211100 01123567888
Q ss_pred eCCCCcC
Q 038053 79 DTPGLFD 85 (231)
Q Consensus 79 Dtpg~~~ 85 (231)
+.|.+++
T Consensus 86 q~~~l~~ 92 (246)
T PRK14269 86 QQPNVFV 92 (246)
T ss_pred cCCcccc
Confidence 8888775
No 309
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.11 E-value=8.5e-11 Score=92.69 Aligned_cols=56 Identities=18% Similarity=0.208 Sum_probs=47.7
Q ss_pred CCCCCCCcc----cCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceee
Q 038053 1 MSSGMGERV----IDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTC 62 (231)
Q Consensus 1 ~~~~~~~~~----~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~ 62 (231)
+++.|+... ++++++|++.+| .++||+|++|||||||.++|+|... +..|.++.+.
T Consensus 9 l~~~y~~~~~~~~~l~~VS~~i~~G--e~lgivGeSGsGKSTL~r~l~Gl~~----p~~G~I~~~G 68 (252)
T COG1124 9 LSIVYGGGKFAFHALNNVSLEIERG--ETLGIVGESGSGKSTLARLLAGLEK----PSSGSILLDG 68 (252)
T ss_pred eEEEecCCcchhhhhcceeEEecCC--CEEEEEcCCCCCHHHHHHHHhcccC----CCCceEEECC
Confidence 356777777 999999999999 9999999999999999999999998 4555555444
No 310
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.11 E-value=7.6e-10 Score=84.62 Aligned_cols=135 Identities=17% Similarity=0.122 Sum_probs=76.7
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053 26 VVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRIG 102 (231)
Q Consensus 26 i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~ 102 (231)
|+++|.+|+|||||++.+++..-.. ....|...... .... .+ ..+.+.||||...... + ..
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~--------~---~~ 64 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPE----DYVPTVFENYSADVEV-DGKPVELGLWDTAGQEDYDR--------L---RP 64 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCC----CCCCcEEeeeeEEEEE-CCEEEEEEEEECCCCcccch--------h---ch
Confidence 5899999999999999999875421 11112211111 1222 23 2477899999653211 1 11
Q ss_pred hhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhhH---------------------HHHHhh
Q 038053 103 LAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRGA---------------------TELRDQ 152 (231)
Q Consensus 103 ~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~---------------------~~l~~~ 152 (231)
..+..+|++++++|+++.-+-.... .....|++ .+.++.|... ..+...
T Consensus 65 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 143 (174)
T smart00174 65 LSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPII-LVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKR 143 (174)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEE-EEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHH
Confidence 2346789999999998542222211 12233443 3334433110 112222
Q ss_pred cc--chhhhhhhhHhhHHHHHHHHHHH
Q 038053 153 QA--EVDSLKEYSKQEISKLMGQMQES 177 (231)
Q Consensus 153 ~~--~i~~is~~~~~~i~~l~~~i~~~ 177 (231)
.+ +.+.+|+++|.|+++++..+...
T Consensus 144 ~~~~~~~e~Sa~~~~~v~~lf~~l~~~ 170 (174)
T smart00174 144 IGAVKYLECSALTQEGVREVFEEAIRA 170 (174)
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHHHH
Confidence 22 45678999999999998887653
No 311
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.11 E-value=3.4e-10 Score=85.62 Aligned_cols=137 Identities=18% Similarity=0.198 Sum_probs=76.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
.+|+++|.+|+|||||++.+++..... ...++........... .+ ..+.+.||||...... +..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~---~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~--------~~~-- 67 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIE---KYDPTIEDFYRKEIEV-DSSPSVLEILDTAGTEQFAS--------MRD-- 67 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC---CCCCchhheEEEEEEE-CCEEEEEEEEECCCcccccc--------hHH--
Confidence 589999999999999998888764321 1111111111122222 22 3466899999643211 111
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH--------h--cCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------A--NGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKE 161 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~--~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~ 161 (231)
..+..+|++++|+|+++.-+-.+.. . ....|++ .+.++.|.. ...+..... +++.+|+
T Consensus 68 -~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piv-iv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 145 (163)
T cd04176 68 -LYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPII-LVGNKVDLESEREVSSAEGRALAEEWGCPFMETSA 145 (163)
T ss_pred -HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECccchhcCccCHHHHHHHHHHhCCEEEEecC
Confidence 1235679999999998543322221 1 1234443 233333310 012222222 5677899
Q ss_pred hhHhhHHHHHHHHHH
Q 038053 162 YSKQEISKLMGQMQE 176 (231)
Q Consensus 162 ~~~~~i~~l~~~i~~ 176 (231)
++|.|+.+++..+..
T Consensus 146 ~~~~~v~~l~~~l~~ 160 (163)
T cd04176 146 KSKTMVNELFAEIVR 160 (163)
T ss_pred CCCCCHHHHHHHHHH
Confidence 999999998877654
No 312
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.11 E-value=5.6e-11 Score=94.17 Aligned_cols=80 Identities=21% Similarity=0.205 Sum_probs=55.1
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEEeeCCcEEEEEeC
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTVLKDGQVVNVIDT 80 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~Dt 80 (231)
+++|++... +++|++.+| .+++|+|+||||||||+++|+|...+ ..|.++...... ..........++++.
T Consensus 7 ~~~~~~~~~--~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~gl~~~----~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 78 (211)
T cd03298 7 RFSYGEQPM--HFDLTFAQG--EITAIVGPSGSGKSTLLNLIAGFETP----QSGRVLINGVDVTAAPPADRPVSMLFQE 78 (211)
T ss_pred EEEeCCEec--ceEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CCceEEECCEEcCcCCHhHccEEEEecc
Confidence 456765542 999999999 99999999999999999999999873 344333322110 000012346788888
Q ss_pred CCCcCCCCC
Q 038053 81 PGLFDSSAG 89 (231)
Q Consensus 81 pg~~~~~~~ 89 (231)
|.+++..+.
T Consensus 79 ~~~~~~~tv 87 (211)
T cd03298 79 NNLFAHLTV 87 (211)
T ss_pred cccCCCCcH
Confidence 888765443
No 313
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.11 E-value=5.4e-11 Score=90.99 Aligned_cols=55 Identities=22% Similarity=0.251 Sum_probs=48.2
Q ss_pred CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCccee
Q 038053 1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKT 61 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~ 61 (231)
++|.|+.+.+++++++.+++| ...+||||||||||||+.+++.... .+.|.++.+
T Consensus 7 v~K~y~~~~vl~~isl~i~~g--~iTs~IGPNGAGKSTLLS~~sRL~~----~d~G~i~i~ 61 (252)
T COG4604 7 VSKSYGTKVVLDDVSLDIPKG--GITSIIGPNGAGKSTLLSMMSRLLK----KDSGEITID 61 (252)
T ss_pred hhHhhCCEEeeccceeeecCC--ceeEEECCCCccHHHHHHHHHHhcc----ccCceEEEe
Confidence 478999999999999999999 9999999999999999999998887 345555543
No 314
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.11 E-value=4.8e-11 Score=106.59 Aligned_cols=82 Identities=15% Similarity=0.074 Sum_probs=57.7
Q ss_pred CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE-E---eeCCcEEE
Q 038053 1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT-V---LKDGQVVN 76 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~-~---~~~~~~~~ 76 (231)
+++.|+++.++++++|++.+| .+++|+|+||||||||+++|+|...+ ..|.+......... . .......+
T Consensus 11 l~~~~~~~~il~~vs~~i~~G--e~~~liG~nGsGKSTLl~~i~Gl~~p----~~G~i~~~g~~i~~~~~~~~~~~~i~~ 84 (510)
T PRK09700 11 IGKSFGPVHALKSVNLTVYPG--EIHALLGENGAGKSTLMKVLSGIHEP----TKGTITINNINYNKLDHKLAAQLGIGI 84 (510)
T ss_pred eEEEcCCeEEeeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHcCCcCC----CccEEEECCEECCCCCHHHHHHCCeEE
Confidence 367788888999999999999 99999999999999999999999873 33333322111000 0 00134667
Q ss_pred EEeCCCCcCCCC
Q 038053 77 VIDTPGLFDSSA 88 (231)
Q Consensus 77 l~Dtpg~~~~~~ 88 (231)
+++.+.+++..+
T Consensus 85 v~q~~~~~~~~t 96 (510)
T PRK09700 85 IYQELSVIDELT 96 (510)
T ss_pred EeecccccCCCc
Confidence 788777665443
No 315
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.11 E-value=5.6e-11 Score=96.68 Aligned_cols=87 Identities=18% Similarity=0.106 Sum_probs=58.5
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcccc-ccCCCCcceeeeeee-E----EeeCCcEE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKA-SADSSGVTKTCEMKT-T----VLKDGQVV 75 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~-~~~~~~~t~~~~~~~-~----~~~~~~~~ 75 (231)
+++|+++.+++++++++.+| .+++|+|+||+|||||+++|+|...+.. .+..|.+..+..... . ........
T Consensus 11 ~~~~~~~~~l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~ 88 (251)
T PRK14270 11 NLWYGEKQALNDINLPIYEN--KITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVG 88 (251)
T ss_pred EEEECCeeeeeceeEEEcCC--CEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheE
Confidence 56787788999999999999 9999999999999999999999865210 012233332221100 0 00134567
Q ss_pred EEEeCCCCcCCCCCch
Q 038053 76 NVIDTPGLFDSSAGSE 91 (231)
Q Consensus 76 ~l~Dtpg~~~~~~~~~ 91 (231)
++++.|.+++ .+..+
T Consensus 89 ~~~q~~~~~~-~tv~e 103 (251)
T PRK14270 89 MVFQKPNPFP-MSIYD 103 (251)
T ss_pred EEecCCCcCC-CcHHH
Confidence 8888888776 44333
No 316
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.11 E-value=3.8e-11 Score=98.75 Aligned_cols=46 Identities=28% Similarity=0.310 Sum_probs=42.6
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF 49 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~ 49 (231)
++.|+++.+|++++|++.+| .+++|+|+||||||||+++|+|...+
T Consensus 8 ~~~~~~~~il~~vsl~i~~G--e~~~l~G~nGsGKSTLl~~laG~~~p 53 (272)
T PRK13547 8 HVARRHRAILRDLSLRIEPG--RVTALLGRNGAGKSTLLKALAGDLTG 53 (272)
T ss_pred EEEECCEeEEecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 56788888999999999999 99999999999999999999999763
No 317
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.11 E-value=8.7e-11 Score=92.50 Aligned_cols=84 Identities=17% Similarity=0.143 Sum_probs=56.2
Q ss_pred CCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eE-EeeCCcEEEEEeCCCC
Q 038053 6 GERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TT-VLKDGQVVNVIDTPGL 83 (231)
Q Consensus 6 ~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~-~~~~~~~~~l~Dtpg~ 83 (231)
++..++++++|++++| .+++|+|+||||||||+++|+|...+.. +..|.++...... .. ........++++.+.+
T Consensus 18 ~~~~il~~~s~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~-~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~ 94 (202)
T cd03233 18 SKIPILKDFSGVVKPG--EMVLVLGRPGSGCSTLLKALANRTEGNV-SVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVH 94 (202)
T ss_pred CCceeeeeEEEEECCC--cEEEEECCCCCCHHHHHHHhcccCCCCC-CcceEEEECCEECccchhhhcceEEEEeccccc
Confidence 3668999999999999 9999999999999999999999976210 1223222221110 00 0113456678888877
Q ss_pred cCCCCCchH
Q 038053 84 FDSSAGSEF 92 (231)
Q Consensus 84 ~~~~~~~~~ 92 (231)
++..+..++
T Consensus 95 ~~~~tv~~~ 103 (202)
T cd03233 95 FPTLTVRET 103 (202)
T ss_pred CCCCcHHHH
Confidence 775554443
No 318
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.11 E-value=5e-11 Score=105.97 Aligned_cols=82 Identities=15% Similarity=0.087 Sum_probs=57.6
Q ss_pred CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE----EeeCCcEEE
Q 038053 1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT----VLKDGQVVN 76 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~ 76 (231)
+++.|+++.++++++|++++| .+++|+|+||||||||+++|+|...+ ..|.++........ ........+
T Consensus 4 l~~~~~~~~il~~vs~~i~~G--e~~~liG~nGsGKSTLl~~l~Gl~~p----~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 4 ISKSFPGVKALDNVNLKVRPH--SIHALMGENGAGKSTLLKCLFGIYQK----DSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred eEEEeCCEEeeeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHcCCCCC----CceEEEECCEECCCCCHHHHHhCCEEE
Confidence 356788888999999999999 99999999999999999999999873 33433322211000 000234567
Q ss_pred EEeCCCCcCCCC
Q 038053 77 VIDTPGLFDSSA 88 (231)
Q Consensus 77 l~Dtpg~~~~~~ 88 (231)
+++.|.+++..+
T Consensus 78 v~q~~~~~~~~t 89 (491)
T PRK10982 78 VHQELNLVLQRS 89 (491)
T ss_pred EecccccccCCC
Confidence 778776655433
No 319
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.11 E-value=4.9e-11 Score=98.11 Aligned_cols=81 Identities=16% Similarity=0.142 Sum_probs=55.5
Q ss_pred CCCCC--CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee----EEeeCCcEE
Q 038053 2 SSGMG--ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT----TVLKDGQVV 75 (231)
Q Consensus 2 ~~~~~--~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~ 75 (231)
++.|+ ++++++++++++.+| .+++|+|+||||||||+++|+|...+ ..|.++....... ... .....
T Consensus 14 ~~~~~~~~~~il~~isl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p----~~G~I~~~g~~i~~~~~~~~-~~~i~ 86 (271)
T PRK13632 14 SFSYPNSENNALKNVSFEINEG--EYVAILGHNGSGKSTISKILTGLLKP----QSGEIKIDGITISKENLKEI-RKKIG 86 (271)
T ss_pred EEEcCCCCccceeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCC----CCceEEECCEecCcCCHHHH-hcceE
Confidence 45674 567999999999999 99999999999999999999999873 3343333221110 011 23466
Q ss_pred EEEeCCC-CcCCCCC
Q 038053 76 NVIDTPG-LFDSSAG 89 (231)
Q Consensus 76 ~l~Dtpg-~~~~~~~ 89 (231)
++++.|. .+...+.
T Consensus 87 ~v~q~~~~~~~~~tv 101 (271)
T PRK13632 87 IIFQNPDNQFIGATV 101 (271)
T ss_pred EEEeCHHHhcCcccH
Confidence 7888773 3433333
No 320
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.10 E-value=9.5e-10 Score=87.61 Aligned_cols=81 Identities=21% Similarity=0.189 Sum_probs=52.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhh
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLA 104 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~ 104 (231)
+|+++|.+|+|||||++.+++..... . ..|.........+ ....+.++||||..... .+. ...
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~~----~-~~Tig~~~~~~~~-~~~~l~iwDt~G~e~~~--------~l~---~~~ 64 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFKD----T-VSTVGGAFYLKQW-GPYNISIWDTAGREQFH--------GLG---SMY 64 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC----C-CCccceEEEEEEe-eEEEEEEEeCCCcccch--------hhH---HHH
Confidence 68999999999999999998876421 1 1122222222222 34567899999965321 111 122
Q ss_pred cCCccEEEEEEECCCCCC
Q 038053 105 KGGIHAVLVVFSVRSRFS 122 (231)
Q Consensus 105 ~~~~~~il~vvd~~~~~~ 122 (231)
+..+|++++|+|+++.-+
T Consensus 65 ~~~ad~~IlV~Dvt~~~S 82 (220)
T cd04126 65 CRGAAAVILTYDVSNVQS 82 (220)
T ss_pred hccCCEEEEEEECCCHHH
Confidence 467899999999986533
No 321
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.10 E-value=5.7e-11 Score=106.02 Aligned_cols=85 Identities=13% Similarity=0.087 Sum_probs=58.0
Q ss_pred CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-EE---eeCCcEEE
Q 038053 1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-TV---LKDGQVVN 76 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-~~---~~~~~~~~ 76 (231)
+++.|++..++++++|++.+| .+++|+|+||||||||+++|+|...+. +..|.+........ .. .......+
T Consensus 11 l~~~~~~~~il~~isl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 86 (506)
T PRK13549 11 ITKTFGGVKALDNVSLKVRAG--EIVSLCGENGAGKSTLMKVLSGVYPHG--TYEGEIIFEGEELQASNIRDTERAGIAI 86 (506)
T ss_pred eEEEeCCeEeecceeEEEeCC--eEEEEECCCCCCHHHHHHHHhCCCCCC--CCCeEEEECCEECCCCCHHHHHHCCeEE
Confidence 356788888999999999999 999999999999999999999987630 02333222111100 00 00234677
Q ss_pred EEeCCCCcCCCCC
Q 038053 77 VIDTPGLFDSSAG 89 (231)
Q Consensus 77 l~Dtpg~~~~~~~ 89 (231)
+++.|.+++..++
T Consensus 87 v~q~~~~~~~~tv 99 (506)
T PRK13549 87 IHQELALVKELSV 99 (506)
T ss_pred EEeccccCCCCcH
Confidence 8888776654443
No 322
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.10 E-value=1e-09 Score=84.13 Aligned_cols=136 Identities=16% Similarity=0.164 Sum_probs=78.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeee-eeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKR 100 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~ 100 (231)
.+|+++|.+|+|||||++.+.+.... .....|..... ..... .+ ..+.+.||||.... ...
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~----~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~l 66 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFP----DYHDPTIEDAYKQQARI-DNEPALLDILDTAGQAEF-----------TAM 66 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCC----CCcCCcccceEEEEEEE-CCEEEEEEEEeCCCchhh-----------HHH
Confidence 58999999999999999988876431 11111221111 11222 33 35678999996531 111
Q ss_pred HhhhcCCccEEEEEEECCCCCCHHHHH----------hcCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhh
Q 038053 101 IGLAKGGIHAVLVVFSVRSRFSQEEEA----------ANGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLK 160 (231)
Q Consensus 101 ~~~~~~~~~~il~vvd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is 160 (231)
....+..+|++++|+|+++.-+-.... .....|++ .+.++.|.. ...+....+ +++.+|
T Consensus 67 ~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~pii-lvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~S 145 (172)
T cd04141 67 RDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLV-LVGNKVDLESQRQVTTEEGRNLAREFNCPFFETS 145 (172)
T ss_pred hHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEE-EEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEe
Confidence 222345789999999998654433321 11223433 233443311 012222222 677789
Q ss_pred hhhHhhHHHHHHHHHH
Q 038053 161 EYSKQEISKLMGQMQE 176 (231)
Q Consensus 161 ~~~~~~i~~l~~~i~~ 176 (231)
|++|.|+++++..+..
T Consensus 146 a~~~~~v~~~f~~l~~ 161 (172)
T cd04141 146 AALRHYIDDAFHGLVR 161 (172)
T ss_pred cCCCCCHHHHHHHHHH
Confidence 9999999998877655
No 323
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.10 E-value=6.6e-11 Score=97.51 Aligned_cols=75 Identities=15% Similarity=0.038 Sum_probs=53.4
Q ss_pred CCCCC-CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE----EeeCCcEEE
Q 038053 2 SSGMG-ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT----VLKDGQVVN 76 (231)
Q Consensus 2 ~~~~~-~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~ 76 (231)
++.|+ +..++++++|++.+| .+++|+|+||+|||||+++|+|...+ ..|.+......... ........+
T Consensus 8 ~~~~~~~~~~l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p----~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (274)
T PRK13644 8 SYSYPDGTPALENINLVIKKG--EYIGIIGKNGSGKSTLALHLNGLLRP----QKGKVLVSGIDTGDFSKLQGIRKLVGI 81 (274)
T ss_pred EEEcCCCCceeeeeEEEEeCC--CEEEEECCCCCCHHHHHHHHhcCCCC----CCceEEECCEECCccccHHHHHhheEE
Confidence 56774 567999999999999 99999999999999999999999773 34433332211100 000234677
Q ss_pred EEeCCC
Q 038053 77 VIDTPG 82 (231)
Q Consensus 77 l~Dtpg 82 (231)
+++.|.
T Consensus 82 v~q~~~ 87 (274)
T PRK13644 82 VFQNPE 87 (274)
T ss_pred EEEChh
Confidence 888775
No 324
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.10 E-value=4.6e-11 Score=98.51 Aligned_cols=83 Identities=14% Similarity=0.119 Sum_probs=57.6
Q ss_pred CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccc-cCCCCcceeeeee-eE---EeeCCcEE
Q 038053 1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKAS-ADSSGVTKTCEMK-TT---VLKDGQVV 75 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~-~~~~~~t~~~~~~-~~---~~~~~~~~ 75 (231)
++++|++++++++++|++++| .+++|+|+||+|||||+++|+|...+..+ +..|.++...... .. ........
T Consensus 27 l~~~~~~~~il~~vs~~i~~G--e~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~ 104 (276)
T PRK14271 27 LTLGFAGKTVLDQVSMGFPAR--AVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVG 104 (276)
T ss_pred EEEEECCEEEeeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheE
Confidence 356788889999999999999 99999999999999999999998763111 1233333222110 00 00134567
Q ss_pred EEEeCCCCcC
Q 038053 76 NVIDTPGLFD 85 (231)
Q Consensus 76 ~l~Dtpg~~~ 85 (231)
++++.|.+++
T Consensus 105 ~v~q~~~l~~ 114 (276)
T PRK14271 105 MLFQRPNPFP 114 (276)
T ss_pred EeccCCccCC
Confidence 8888888776
No 325
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.10 E-value=8.2e-11 Score=96.47 Aligned_cols=77 Identities=19% Similarity=0.101 Sum_probs=53.5
Q ss_pred CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE-E-----eeCCcEEEEEeC
Q 038053 7 ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT-V-----LKDGQVVNVIDT 80 (231)
Q Consensus 7 ~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~-~-----~~~~~~~~l~Dt 80 (231)
++.++++++|++++| .+++|+|+||||||||+++|+|...+ ..|.++........ . .......++++.
T Consensus 23 ~~~il~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p----~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~ 96 (265)
T TIGR02769 23 RAPVLTNVSLSIEEG--ETVGLLGRSGCGKSTLARLLLGLEKP----AQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQD 96 (265)
T ss_pred ceEEeeCceeEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CCcEEEECCEEccccCHHHHHHHhhceEEEecC
Confidence 467999999999999 99999999999999999999999873 44444433221100 0 012346778888
Q ss_pred CC--CcCCCCC
Q 038053 81 PG--LFDSSAG 89 (231)
Q Consensus 81 pg--~~~~~~~ 89 (231)
|. +++..+.
T Consensus 97 ~~~~~~~~~tv 107 (265)
T TIGR02769 97 SPSAVNPRMTV 107 (265)
T ss_pred hhhhcCCCCCH
Confidence 73 4443343
No 326
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.09 E-value=3.7e-10 Score=88.58 Aligned_cols=137 Identities=15% Similarity=0.154 Sum_probs=78.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRIG 102 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~ 102 (231)
+|+++|.+|+|||||++.+++..... ....++.......... .+ ..+.++||||..... .+. .
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~---~~~~t~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~--------~~~---~ 65 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEP---KYRRTVEEMHRKEYEV-GGVSLTLDILDTSGSYSFP--------AMR---K 65 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCc---cCCCchhhheeEEEEE-CCEEEEEEEEECCCchhhh--------HHH---H
Confidence 48999999999999999998875421 1111111111122222 33 457789999976421 111 1
Q ss_pred hhcCCccEEEEEEECCCCCCHHHHH--------h--cCCCCcHHHHHHHHHhhH-------HHHHh----hc-cchhhhh
Q 038053 103 LAKGGIHAVLVVFSVRSRFSQEEEA--------A--NGGQPYTDEFLAELKRGA-------TELRD----QQ-AEVDSLK 160 (231)
Q Consensus 103 ~~~~~~~~il~vvd~~~~~~~~~~~--------~--~~~~~~~~~~~~~~~~~~-------~~l~~----~~-~~i~~is 160 (231)
..+..+|++++|+|+++.-+..+.. . ....|++ .+.+++|... ..... .. .+++.+|
T Consensus 66 ~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~S 144 (198)
T cd04147 66 LSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIV-VVGNKADSLEEERQVPAKDALSTVELDWNCGFVETS 144 (198)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE-EEEEccccccccccccHHHHHHHHHhhcCCcEEEec
Confidence 2346789999999998533322211 1 1233443 3344443200 01111 11 1556799
Q ss_pred hhhHhhHHHHHHHHHHH
Q 038053 161 EYSKQEISKLMGQMQES 177 (231)
Q Consensus 161 ~~~~~~i~~l~~~i~~~ 177 (231)
+.+|.|+.+++..+...
T Consensus 145 a~~g~gv~~l~~~l~~~ 161 (198)
T cd04147 145 AKDNENVLEVFKELLRQ 161 (198)
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 99999999999988764
No 327
>PRK00049 elongation factor Tu; Reviewed
Probab=99.09 E-value=4.4e-10 Score=97.19 Aligned_cols=92 Identities=17% Similarity=0.192 Sum_probs=63.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccc--------------cCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKAS--------------ADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAG 89 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~--------------~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~ 89 (231)
.+|+++|+.++|||||++.|++......+ ....+.|.+........ .+..+.++||||..
T Consensus 13 ~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~----- 86 (396)
T PRK00049 13 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYET-EKRHYAHVDCPGHA----- 86 (396)
T ss_pred EEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcC-CCeEEEEEECCCHH-----
Confidence 78999999999999999999984211000 01345565554333333 56678899999963
Q ss_pred chHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH
Q 038053 90 SEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA 127 (231)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~ 127 (231)
.+..........+|++++|+|+..++...+..
T Consensus 87 ------~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~ 118 (396)
T PRK00049 87 ------DYVKNMITGAAQMDGAILVVSAADGPMPQTRE 118 (396)
T ss_pred ------HHHHHHHhhhccCCEEEEEEECCCCCchHHHH
Confidence 23334444557899999999998777766543
No 328
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.09 E-value=7.2e-11 Score=100.65 Aligned_cols=85 Identities=18% Similarity=0.188 Sum_probs=59.6
Q ss_pred CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-------EEeeCCc
Q 038053 1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-------TVLKDGQ 73 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-------~~~~~~~ 73 (231)
+++.|++..+ +++|++.+| .+++|+|+||||||||+++|+|...+ ..|.+........ .......
T Consensus 5 l~~~~~~~~~--~isl~i~~G--ei~~l~G~nGsGKSTLl~~iaGl~~p----~~G~I~~~g~~i~~~~~~~~~~~~~~~ 76 (354)
T TIGR02142 5 FSKRLGDFSL--DADFTLPGQ--GVTAIFGRSGSGKTTLIRLIAGLTRP----DEGEIVLNGRTLFDSRKGIFLPPEKRR 76 (354)
T ss_pred EEEEECCEEE--EEEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CceEEEECCEECccCccccccchhhCC
Confidence 3567877654 899999999 99999999999999999999999874 3333332221100 0011345
Q ss_pred EEEEEeCCCCcCCCCCchHH
Q 038053 74 VVNVIDTPGLFDSSAGSEFV 93 (231)
Q Consensus 74 ~~~l~Dtpg~~~~~~~~~~~ 93 (231)
..++++.|.+++..+..+++
T Consensus 77 i~~v~q~~~l~~~~tv~enl 96 (354)
T TIGR02142 77 IGYVFQEARLFPHLSVRGNL 96 (354)
T ss_pred eEEEecCCccCCCCcHHHHH
Confidence 67889999988866655443
No 329
>PRK09866 hypothetical protein; Provisional
Probab=99.09 E-value=4.4e-10 Score=99.99 Aligned_cols=97 Identities=15% Similarity=0.205 Sum_probs=60.5
Q ss_pred cEEEEEeCCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH-----hcCC--CCcHHHHHHHHHhh
Q 038053 73 QVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGG--QPYTDEFLAELKRG 145 (231)
Q Consensus 73 ~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~~ 145 (231)
..++++||||+..... ..+.+.+.. .+..+|+|++|+|+...++..+.. ...+ .|++ .++|++|..
T Consensus 230 ~QIIFVDTPGIhk~~~--~~L~k~M~e----qL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVI-LVVNKIDl~ 302 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQ--PHLQKMLNQ----QLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLY-VLVNKFDQQ 302 (741)
T ss_pred CCEEEEECCCCCCccc--hHHHHHHHH----HHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEE-EEEEcccCC
Confidence 4578999999986321 223333333 467889999999998666666654 1112 2443 333444321
Q ss_pred ------HHHHHh----h-------ccchhhhhhhhHhhHHHHHHHHHH
Q 038053 146 ------ATELRD----Q-------QAEVDSLKEYSKQEISKLMGQMQE 176 (231)
Q Consensus 146 ------~~~l~~----~-------~~~i~~is~~~~~~i~~l~~~i~~ 176 (231)
.+.+.. . ...|+++||++|.++..++..+..
T Consensus 303 dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 303 DRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred CcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 111111 1 226889999999999999998877
No 330
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.09 E-value=1e-10 Score=93.69 Aligned_cols=82 Identities=20% Similarity=0.131 Sum_probs=55.1
Q ss_pred cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCC
Q 038053 8 RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSS 87 (231)
Q Consensus 8 ~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~ 87 (231)
++++++++|++.+| .+++|+|+||||||||+++|+|..... .+..|.+.................++++.+.+++..
T Consensus 20 ~~~l~~vsl~i~~G--e~~~l~G~nGsGKSTLlk~l~G~~~~~-~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~ 96 (226)
T cd03234 20 ARILNDVSLHVESG--QVMAILGSSGSGKTTLLDAISGRVEGG-GTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGL 96 (226)
T ss_pred cccccCceEEEcCC--eEEEEECCCCCCHHHHHHHHhCccCCC-CCCceEEEECCEECChHHhcccEEEeCCCCccCcCC
Confidence 68999999999999 999999999999999999999987510 012222222111100001134567788888888755
Q ss_pred CCchH
Q 038053 88 AGSEF 92 (231)
Q Consensus 88 ~~~~~ 92 (231)
+..++
T Consensus 97 tv~en 101 (226)
T cd03234 97 TVRET 101 (226)
T ss_pred cHHHH
Confidence 54443
No 331
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.09 E-value=1.3e-10 Score=92.31 Aligned_cols=83 Identities=16% Similarity=0.143 Sum_probs=57.6
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEEeeCCcEEEEEeC
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTVLKDGQVVNVIDT 80 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~Dt 80 (231)
+++|+. .+.++++++.+| .+++|+|+||+|||||+++|+|...+ ..|.+....... ..........++++.
T Consensus 7 ~~~~~~--~~~~~s~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~----~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 78 (213)
T TIGR01277 7 RYEYEH--LPMEFDLNVADG--EIVAIMGPSGAGKSTLLNLIAGFIEP----ASGSIKVNDQSHTGLAPYQRPVSMLFQE 78 (213)
T ss_pred eEEeCC--cceeeEEEEeCC--cEEEEECCCCCCHHHHHHHHhcCCCC----CCcEEEECCEEcccCChhccceEEEecc
Confidence 556653 567999999999 99999999999999999999999874 333333222110 000113457788999
Q ss_pred CCCcCCCCCchH
Q 038053 81 PGLFDSSAGSEF 92 (231)
Q Consensus 81 pg~~~~~~~~~~ 92 (231)
|.+++..+..++
T Consensus 79 ~~~~~~~t~~en 90 (213)
T TIGR01277 79 NNLFAHLTVRQN 90 (213)
T ss_pred CccCCCCcHHHH
Confidence 988875554443
No 332
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.09 E-value=6.7e-11 Score=96.10 Aligned_cols=82 Identities=17% Similarity=0.080 Sum_probs=56.6
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccc-cCCCCcceeeeeee----EEeeCCcEEE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKAS-ADSSGVTKTCEMKT----TVLKDGQVVN 76 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~-~~~~~~t~~~~~~~----~~~~~~~~~~ 76 (231)
++.|+++.++++++|++.+| .+++|+|+||+|||||+++|+|...+..+ +..|.+........ .........+
T Consensus 10 ~~~~~~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~ 87 (249)
T PRK14253 10 DLFYGENQALKSINLPIPAR--QVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGM 87 (249)
T ss_pred EEEECCeeeeecceEEecCC--CEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeE
Confidence 56788888999999999999 99999999999999999999998763211 11232222211100 0011234677
Q ss_pred EEeCCCCcC
Q 038053 77 VIDTPGLFD 85 (231)
Q Consensus 77 l~Dtpg~~~ 85 (231)
+++.|.+++
T Consensus 88 ~~q~~~~~~ 96 (249)
T PRK14253 88 VFQKPNPFP 96 (249)
T ss_pred EecCCCcCc
Confidence 888888775
No 333
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.09 E-value=6.4e-11 Score=94.69 Aligned_cols=78 Identities=17% Similarity=0.141 Sum_probs=54.2
Q ss_pred cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceee-----eeeeEE------eeCCcEEE
Q 038053 8 RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTC-----EMKTTV------LKDGQVVN 76 (231)
Q Consensus 8 ~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~-----~~~~~~------~~~~~~~~ 76 (231)
..++++++|++.+| .+++|+|+||+|||||+++|+|...+ ..|.++... ...... .......+
T Consensus 21 ~~il~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~i~G~~~~----~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~ 94 (224)
T TIGR02324 21 LPVLKNVSLTVNAG--ECVALSGPSGAGKSTLLKSLYANYLP----DSGRILVRHEGAWVDLAQASPREVLEVRRKTIGY 94 (224)
T ss_pred eEEEecceEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CCCeEEEecCCCccchhhcCHHHHHHHHhcceEE
Confidence 47999999999999 99999999999999999999999873 333333221 000000 00134677
Q ss_pred EEeCCCCcCCCCCch
Q 038053 77 VIDTPGLFDSSAGSE 91 (231)
Q Consensus 77 l~Dtpg~~~~~~~~~ 91 (231)
+++.|.+++..+..+
T Consensus 95 ~~q~~~~~~~~tv~e 109 (224)
T TIGR02324 95 VSQFLRVIPRVSALE 109 (224)
T ss_pred EecccccCCCccHHH
Confidence 888888776554433
No 334
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.09 E-value=5.5e-11 Score=97.18 Aligned_cols=83 Identities=12% Similarity=0.036 Sum_probs=56.7
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc-ccccCCCCcceeeeeee-----EEeeCCcEE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF-KASADSSGVTKTCEMKT-----TVLKDGQVV 75 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~-~~~~~~~~~t~~~~~~~-----~~~~~~~~~ 75 (231)
++.|+++.++++++|++++| .+++|+|+||+|||||+++|+|...+ ...+..|.++....... .........
T Consensus 19 ~~~~~~~~~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 96 (259)
T PRK14274 19 NLWYGQHHALKNINLSIPEN--EVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIG 96 (259)
T ss_pred EEEECCeeeEEeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceE
Confidence 56777788999999999999 99999999999999999999998652 00012333333221110 000124467
Q ss_pred EEEeCCCCcCC
Q 038053 76 NVIDTPGLFDS 86 (231)
Q Consensus 76 ~l~Dtpg~~~~ 86 (231)
++++.|.+++.
T Consensus 97 ~v~q~~~~~~~ 107 (259)
T PRK14274 97 MVFQKGNPFPQ 107 (259)
T ss_pred EEecCCccccc
Confidence 78888887763
No 335
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.09 E-value=6.5e-11 Score=97.40 Aligned_cols=46 Identities=17% Similarity=0.027 Sum_probs=42.8
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF 49 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~ 49 (231)
++.|+++.++++++|++.+| .+++|+|+||||||||+++|+|...+
T Consensus 8 ~~~~~~~~il~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p 53 (271)
T PRK13638 8 WFRYQDEPVLKGLNLDFSLS--PVTGLVGANGCGKSTLFMNLSGLLRP 53 (271)
T ss_pred EEEcCCcccccceEEEEcCC--CEEEEECCCCCCHHHHHHHHcCCCCC
Confidence 56788888999999999999 99999999999999999999999873
No 336
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.09 E-value=7e-11 Score=105.51 Aligned_cols=84 Identities=21% Similarity=0.103 Sum_probs=59.3
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE----EeeCCcEEEE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT----VLKDGQVVNV 77 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~l 77 (231)
++.|+++.+|++++|++++| .+++|+|+||||||||+++|+|...+ ..|.+......... ........++
T Consensus 18 ~~~~~~~~il~~vsl~i~~G--e~~~liG~NGsGKSTLl~~l~Gl~~p----~~G~i~~~g~~~~~~~~~~~~~~~i~~v 91 (510)
T PRK15439 18 SKQYSGVEVLKGIDFTLHAG--EVHALLGGNGAGKSTLMKIIAGIVPP----DSGTLEIGGNPCARLTPAKAHQLGIYLV 91 (510)
T ss_pred EEEeCCceeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 56788888999999999999 99999999999999999999999873 33333322111000 0001235678
Q ss_pred EeCCCCcCCCCCch
Q 038053 78 IDTPGLFDSSAGSE 91 (231)
Q Consensus 78 ~Dtpg~~~~~~~~~ 91 (231)
++.|.+++..++.+
T Consensus 92 ~q~~~~~~~~tv~e 105 (510)
T PRK15439 92 PQEPLLFPNLSVKE 105 (510)
T ss_pred eccCccCCCCcHHH
Confidence 88887776555444
No 337
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.08 E-value=7.9e-11 Score=95.91 Aligned_cols=82 Identities=20% Similarity=0.155 Sum_probs=56.1
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcccc-ccCCCCcceeeeeee-----EEeeCCcEE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKA-SADSSGVTKTCEMKT-----TVLKDGQVV 75 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~-~~~~~~~t~~~~~~~-----~~~~~~~~~ 75 (231)
++.|+++.+|++++|++.+| ..++|+|+||+|||||+++|+|...+.. .+..|.+........ .........
T Consensus 13 ~~~~~~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 90 (253)
T PRK14261 13 NLWYGEKHALYDITISIPKN--RVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIG 90 (253)
T ss_pred EEEECCeeeeeeeEEEECCC--cEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEE
Confidence 56778888999999999999 9999999999999999999999754210 001233332221100 001124467
Q ss_pred EEEeCCCCcC
Q 038053 76 NVIDTPGLFD 85 (231)
Q Consensus 76 ~l~Dtpg~~~ 85 (231)
++++.|.+++
T Consensus 91 ~~~q~~~~~~ 100 (253)
T PRK14261 91 MVFQRPNPFP 100 (253)
T ss_pred EEecCCccCc
Confidence 8889888775
No 338
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.08 E-value=4.8e-11 Score=97.58 Aligned_cols=82 Identities=16% Similarity=0.105 Sum_probs=56.2
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccc-cccCCCCcceeeeeee-E----EeeCCcEE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFK-ASADSSGVTKTCEMKT-T----VLKDGQVV 75 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~-~~~~~~~~t~~~~~~~-~----~~~~~~~~ 75 (231)
++.|++..+++++++++++| .+++|+|+||||||||+++|+|...+. ..+..|.+........ . ........
T Consensus 20 ~~~~~~~~il~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~ 97 (260)
T PRK10744 20 NFYYGKFHALKNINLDIAKN--QVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVG 97 (260)
T ss_pred EEEeCCeEEeeceeEEEcCC--CEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceE
Confidence 56778778999999999999 999999999999999999999986410 0012333332221100 0 00134567
Q ss_pred EEEeCCCCcC
Q 038053 76 NVIDTPGLFD 85 (231)
Q Consensus 76 ~l~Dtpg~~~ 85 (231)
++++.|.+++
T Consensus 98 ~~~q~~~~~~ 107 (260)
T PRK10744 98 MVFQKPTPFP 107 (260)
T ss_pred EEecCCccCc
Confidence 8888887765
No 339
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.08 E-value=4.7e-11 Score=98.12 Aligned_cols=45 Identities=18% Similarity=0.138 Sum_probs=41.7
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
++.|++..+|++++|++.+| .+++|+|+||||||||+++|+|...
T Consensus 20 ~~~~~~~~il~~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~ 64 (269)
T PRK14259 20 TISYGTFEAVKNVFCDIPRG--KVTALIGPSGCGKSTVLRSLNRMND 64 (269)
T ss_pred EEEECCEEEEcceEEEEcCC--CEEEEECCCCCCHHHHHHHHhcccc
Confidence 56778888999999999999 9999999999999999999999865
No 340
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.08 E-value=5.8e-11 Score=108.54 Aligned_cols=47 Identities=23% Similarity=0.260 Sum_probs=44.0
Q ss_pred CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053 1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF 49 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~ 49 (231)
+++.|+++.+|++++|++.+| .+++|+|+||||||||+++|+|...+
T Consensus 7 ls~~~g~~~~l~~vs~~i~~G--e~v~LvG~NGsGKSTLLkiL~G~~~p 53 (638)
T PRK10636 7 LQIRRGVRVLLDNATATINPG--QKVGLVGKNGCGKSTLLALLKNEISA 53 (638)
T ss_pred EEEEeCCceeecCcEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 467899999999999999999 99999999999999999999998764
No 341
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.08 E-value=6.8e-11 Score=97.65 Aligned_cols=74 Identities=19% Similarity=0.114 Sum_probs=52.8
Q ss_pred CCCCCC--cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE---EeeCCcEEE
Q 038053 2 SSGMGE--RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT---VLKDGQVVN 76 (231)
Q Consensus 2 ~~~~~~--~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~ 76 (231)
++.|+. ++++++++|++.+| .+++|+|+||+|||||+++|+|...+ ..|.++.+...... ........+
T Consensus 12 ~~~~~~~~~~~l~~vsl~i~~G--e~~~i~G~nGaGKSTLl~~i~G~~~p----~~G~i~~~g~~i~~~~~~~~~~~i~~ 85 (279)
T PRK13635 12 SFRYPDAATYALKDVSFSVYEG--EWVAIVGHNGSGKSTLAKLLNGLLLP----EAGTITVGGMVLSEETVWDVRRQVGM 85 (279)
T ss_pred EEEeCCCCccceeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCC----CCcEEEECCEECCcCcHHHHhhheEE
Confidence 456653 56999999999999 99999999999999999999999873 44444433221100 001234677
Q ss_pred EEeCC
Q 038053 77 VIDTP 81 (231)
Q Consensus 77 l~Dtp 81 (231)
+++.|
T Consensus 86 ~~q~~ 90 (279)
T PRK13635 86 VFQNP 90 (279)
T ss_pred EEeCH
Confidence 88877
No 342
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.08 E-value=9.8e-11 Score=100.51 Aligned_cols=86 Identities=17% Similarity=0.097 Sum_probs=63.1
Q ss_pred CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEe----eCCcEEE
Q 038053 1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVL----KDGQVVN 76 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~~ 76 (231)
++|.|++-.+.++++|++.+| .+-+|+|.||||||||+++|+|... |+.|.+-.+........ .....++
T Consensus 10 itK~f~~~~And~V~l~v~~G--eIHaLLGENGAGKSTLm~iL~G~~~----P~~GeI~v~G~~v~~~sP~dA~~~GIGM 83 (501)
T COG3845 10 ITKRFPGVVANDDVSLSVKKG--EIHALLGENGAGKSTLMKILFGLYQ----PDSGEIRVDGKEVRIKSPRDAIRLGIGM 83 (501)
T ss_pred cEEEcCCEEecCceeeeecCC--cEEEEeccCCCCHHHHHHHHhCccc----CCcceEEECCEEeccCCHHHHHHcCCcE
Confidence 578999999999999999999 9999999999999999999999998 44554444333322211 0223456
Q ss_pred EEeCCCCcCCCCCchH
Q 038053 77 VIDTPGLFDSSAGSEF 92 (231)
Q Consensus 77 l~Dtpg~~~~~~~~~~ 92 (231)
+.|-+-+.+..++.++
T Consensus 84 VhQHF~Lv~~lTV~EN 99 (501)
T COG3845 84 VHQHFMLVPTLTVAEN 99 (501)
T ss_pred Eeeccccccccchhhh
Confidence 6666666666555444
No 343
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.08 E-value=7.9e-11 Score=104.98 Aligned_cols=83 Identities=13% Similarity=0.070 Sum_probs=58.7
Q ss_pred CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE----EeeCCcEEE
Q 038053 1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT----VLKDGQVVN 76 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~ 76 (231)
+++.|++..+|++++|++++| .+++|+|+||||||||+++|+|...+ ..|.+......... ........+
T Consensus 10 l~~~~~~~~il~~isl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p----~~G~I~~~g~~i~~~~~~~~~~~~i~~ 83 (501)
T PRK11288 10 IGKTFPGVKALDDISFDCRAG--QVHALMGENGAGKSTLLKILSGNYQP----DAGSILIDGQEMRFASTTAALAAGVAI 83 (501)
T ss_pred eEEEECCEEEEeeeeEEEeCC--cEEEEECCCCCCHHHHHHHHhCCCCC----CCCEEEECCEECCCCCHHHHHhCCEEE
Confidence 356788888999999999999 99999999999999999999999863 33333322111000 000234677
Q ss_pred EEeCCCCcCCCCC
Q 038053 77 VIDTPGLFDSSAG 89 (231)
Q Consensus 77 l~Dtpg~~~~~~~ 89 (231)
+++.|.+++..+.
T Consensus 84 v~q~~~~~~~~tv 96 (501)
T PRK11288 84 IYQELHLVPEMTV 96 (501)
T ss_pred EEechhccCCCCH
Confidence 8888877765443
No 344
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.08 E-value=1e-09 Score=90.08 Aligned_cols=106 Identities=21% Similarity=0.343 Sum_probs=69.1
Q ss_pred EEEEEcCCCCCHHHHHHHHh---CCCccccc-------------cCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCC
Q 038053 25 TVVLLGRTGNGKSATGNSIL---GRKAFKAS-------------ADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSA 88 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~---g~~~~~~~-------------~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~ 88 (231)
+|+++|++|+|||||+++|+ |....... ....++|.........+ .+..+.++||||..+
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~~d--- 76 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW-KDHRINIIDTPGHVD--- 76 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE-CCEEEEEEECCCcHH---
Confidence 48999999999999999996 43221110 11235555555556666 788899999999764
Q ss_pred CchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHH
Q 038053 89 GSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELK 143 (231)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 143 (231)
+......++..+|++++|+|+..++...+.. .....|.+ .++|++|
T Consensus 77 --------f~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~i-vviNK~D 127 (270)
T cd01886 77 --------FTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRI-AFVNKMD 127 (270)
T ss_pred --------HHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEECCC
Confidence 1122333446679999999998777766544 23344554 3455555
No 345
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.08 E-value=5.5e-11 Score=97.66 Aligned_cols=82 Identities=20% Similarity=0.136 Sum_probs=56.0
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcccc-ccCCCCcceeeeeee---E--EeeCCcEE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKA-SADSSGVTKTCEMKT---T--VLKDGQVV 75 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~-~~~~~~~t~~~~~~~---~--~~~~~~~~ 75 (231)
++.|++..++++++|++.+| .+++|+|+||||||||+++|+|...... .+..|.+........ . ........
T Consensus 28 ~~~~~~~~il~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~ 105 (268)
T PRK14248 28 SIYYGEKRAVNDISMDIEKH--AVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIG 105 (268)
T ss_pred EEEeCCceeeeceEEEEcCC--CEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEE
Confidence 56788888999999999999 9999999999999999999999742100 012333322211100 0 01134567
Q ss_pred EEEeCCCCcC
Q 038053 76 NVIDTPGLFD 85 (231)
Q Consensus 76 ~l~Dtpg~~~ 85 (231)
++++.|.+++
T Consensus 106 ~v~q~~~~~~ 115 (268)
T PRK14248 106 MVFQKPNPFP 115 (268)
T ss_pred EEecCCccCc
Confidence 8888888775
No 346
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.08 E-value=7.9e-11 Score=93.04 Aligned_cols=78 Identities=14% Similarity=0.100 Sum_probs=55.4
Q ss_pred CCCCCC--cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-E--EeeCCcEEE
Q 038053 2 SSGMGE--RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-T--VLKDGQVVN 76 (231)
Q Consensus 2 ~~~~~~--~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-~--~~~~~~~~~ 76 (231)
+++|+. ..+++++++.+++| .+++|+|+||+|||||+++|+|...+ ..|.+........ . ........+
T Consensus 13 ~~~~~~~~~~~l~~isl~i~~G--~~~~i~G~nGsGKSTLl~~l~Gl~~~----~~G~i~~~g~~~~~~~~~~~~~~i~~ 86 (207)
T cd03369 13 SVRYAPDLPPVLKNVSFKVKAG--EKIGIVGRTGAGKSTLILALFRFLEA----EEGKIEIDGIDISTIPLEDLRSSLTI 86 (207)
T ss_pred EEEeCCCCcccccCceEEECCC--CEEEEECCCCCCHHHHHHHHhcccCC----CCCeEEECCEEhHHCCHHHHHhhEEE
Confidence 455654 47999999999999 99999999999999999999999773 3444433221100 0 001245677
Q ss_pred EEeCCCCcC
Q 038053 77 VIDTPGLFD 85 (231)
Q Consensus 77 l~Dtpg~~~ 85 (231)
+++.|.+++
T Consensus 87 v~q~~~~~~ 95 (207)
T cd03369 87 IPQDPTLFS 95 (207)
T ss_pred EecCCcccC
Confidence 888887765
No 347
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.07 E-value=1.4e-09 Score=83.13 Aligned_cols=137 Identities=13% Similarity=0.081 Sum_probs=75.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeee-eeeEEee-CCcEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCE-MKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~-~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
.+|+++|++|||||||++.+++..-. .....|.... ....... ....+.++||||...... + .
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~---~ 66 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFP----EVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDR--------L---R 66 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC----CCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhh--------c---c
Confidence 57999999999999999999986532 1111121111 1122221 123567899999643110 1 1
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHh---------------------hHHHHHh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKR---------------------GATELRD 151 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~---------------------~~~~l~~ 151 (231)
...+..+|+++++++.++.-+..... .....|++ .+.++.+. ....+..
T Consensus 67 ~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~ 145 (175)
T cd01870 67 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII-LVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMAN 145 (175)
T ss_pred ccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEE-EEeeChhcccChhhhhhhhhccCCCccHHHHHHHHH
Confidence 12346789999999987432211111 11233333 22233221 0011222
Q ss_pred hcc--chhhhhhhhHhhHHHHHHHHHH
Q 038053 152 QQA--EVDSLKEYSKQEISKLMGQMQE 176 (231)
Q Consensus 152 ~~~--~i~~is~~~~~~i~~l~~~i~~ 176 (231)
..+ +++.+||++|.|+++++..+..
T Consensus 146 ~~~~~~~~~~Sa~~~~~v~~lf~~l~~ 172 (175)
T cd01870 146 KIGAFGYMECSAKTKEGVREVFEMATR 172 (175)
T ss_pred HcCCcEEEEeccccCcCHHHHHHHHHH
Confidence 222 5677899999999999888764
No 348
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.07 E-value=1.1e-10 Score=95.75 Aligned_cols=69 Identities=14% Similarity=0.150 Sum_probs=49.4
Q ss_pred cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee---EEeeCCcEEEEEeCCC
Q 038053 8 RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT---TVLKDGQVVNVIDTPG 82 (231)
Q Consensus 8 ~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~l~Dtpg 82 (231)
.+++++++|++++| .+++|+|+||||||||+++|+|...+ ..|.++....... ........+++++.|.
T Consensus 26 ~~~l~~vsl~i~~G--e~~~i~G~NGsGKSTLl~~l~Gl~~p----~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~ 97 (267)
T PRK15112 26 VEAVKPLSFTLREG--QTLAIIGENGSGKSTLAKMLAGMIEP----TSGELLIDDHPLHFGDYSYRSQRIRMIFQDPS 97 (267)
T ss_pred cceeeeeeEEecCC--CEEEEEcCCCCCHHHHHHHHhCCCCC----CCCEEEECCEECCCCchhhHhccEEEEecCch
Confidence 57999999999999 99999999999999999999999873 3443333221110 0010234677788765
No 349
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.07 E-value=6.7e-10 Score=88.68 Aligned_cols=139 Identities=17% Similarity=0.104 Sum_probs=77.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcc-ccccCCCCcceeeeeeeEEe-eCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAF-KASADSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG 102 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~-~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~ 102 (231)
+|+++|.+|+|||||++.+++.... ......++.. ........ .....+.++||||... .+. .
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~--~~~~~i~~~~~~~~l~i~Dt~G~~~------~~~----~--- 66 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDD--TYERTVSVDGEESTLVVIDHWEQEM------WTE----D--- 66 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcCccCcCCCcccc--ceEEEEEECCEEEEEEEEeCCCcch------HHH----h---
Confidence 6999999999999999999754331 1101111101 11111111 1235577999999761 111 1
Q ss_pred hhcC-CccEEEEEEECCCCCCHHHHH--------h--cCCCCcHHHHHHHHHhhH---------HHHHhhcc-chhhhhh
Q 038053 103 LAKG-GIHAVLVVFSVRSRFSQEEEA--------A--NGGQPYTDEFLAELKRGA---------TELRDQQA-EVDSLKE 161 (231)
Q Consensus 103 ~~~~-~~~~il~vvd~~~~~~~~~~~--------~--~~~~~~~~~~~~~~~~~~---------~~l~~~~~-~i~~is~ 161 (231)
..+. .+|++++|+|+++.-+..... . ....|++ .+.++.|... ..+....+ +++.+|+
T Consensus 67 ~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~pii-lV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA 145 (221)
T cd04148 67 SCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPII-LVGNKSDLARSREVSVQEGRACAVVFDCKFIETSA 145 (221)
T ss_pred HHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEEChhccccceecHHHHHHHHHHcCCeEEEecC
Confidence 1123 789999999998543322111 1 1233443 3444444210 11211112 5677899
Q ss_pred hhHhhHHHHHHHHHHHHH
Q 038053 162 YSKQEISKLMGQMQESYE 179 (231)
Q Consensus 162 ~~~~~i~~l~~~i~~~~~ 179 (231)
.++.|+++++..+.....
T Consensus 146 ~~~~gv~~l~~~l~~~~~ 163 (221)
T cd04148 146 GLQHNVDELLEGIVRQIR 163 (221)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999988876553
No 350
>PRK12735 elongation factor Tu; Reviewed
Probab=99.07 E-value=3.5e-09 Score=91.66 Aligned_cols=91 Identities=18% Similarity=0.189 Sum_probs=61.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccc--------------ccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKA--------------SADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAG 89 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~ 89 (231)
.+|+++|+.++|||||+++|++...... .....+.|.+........ .+..+.++||||..
T Consensus 13 ~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~-~~~~i~~iDtPGh~----- 86 (396)
T PRK12735 13 VNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYET-ANRHYAHVDCPGHA----- 86 (396)
T ss_pred EEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcC-CCcEEEEEECCCHH-----
Confidence 7899999999999999999997311000 011345565544333333 56678899999953
Q ss_pred chHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHH
Q 038053 90 SEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEE 126 (231)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~ 126 (231)
.+...+......+|.+++|+|+..++.....
T Consensus 87 ------~f~~~~~~~~~~aD~~llVvda~~g~~~qt~ 117 (396)
T PRK12735 87 ------DYVKNMITGAAQMDGAILVVSAADGPMPQTR 117 (396)
T ss_pred ------HHHHHHHhhhccCCEEEEEEECCCCCchhHH
Confidence 2333344455788999999999866665543
No 351
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.07 E-value=1e-09 Score=88.42 Aligned_cols=89 Identities=21% Similarity=0.286 Sum_probs=57.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccc---cCC-------------CCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCC
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKAS---ADS-------------SGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSA 88 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~---~~~-------------~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~ 88 (231)
+|+++|+.|+|||||+++|+........ ... .+.|.........+ .+..+.++||||..+.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~-~~~~i~liDTPG~~~f-- 77 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQW-EDTKVNLIDTPGHMDF-- 77 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEE-CCEEEEEEeCCCccch--
Confidence 4899999999999999999865322110 111 12222223334445 6788999999998652
Q ss_pred CchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHH
Q 038053 89 GSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEE 125 (231)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~ 125 (231)
... ....+..+|.+++|+|+.+++....
T Consensus 78 -----~~~----~~~~l~~aD~~IlVvd~~~g~~~~~ 105 (237)
T cd04168 78 -----IAE----VERSLSVLDGAILVISAVEGVQAQT 105 (237)
T ss_pred -----HHH----HHHHHHHhCeEEEEEeCCCCCCHHH
Confidence 112 2233456799999999987766543
No 352
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.07 E-value=9.2e-11 Score=99.90 Aligned_cols=85 Identities=15% Similarity=0.189 Sum_probs=59.8
Q ss_pred CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-------EEeeCCc
Q 038053 1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-------TVLKDGQ 73 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-------~~~~~~~ 73 (231)
++++|++..+ +++|++++| .+++|+|+||||||||+++|+|...+ ..|.+........ .......
T Consensus 6 l~k~~~~~~~--~vsl~i~~G--e~~~l~G~nGsGKSTLl~~iaGl~~p----~~G~I~~~g~~~~~~~~~~~~~~~~~~ 77 (352)
T PRK11144 6 FKQQLGDLCL--TVNLTLPAQ--GITAIFGRSGAGKTSLINAISGLTRP----QKGRIVLNGRVLFDAEKGICLPPEKRR 77 (352)
T ss_pred EEEEeCCEEE--EEEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CceEEEECCEEccccccccccchhhCC
Confidence 3677877543 899999999 99999999999999999999999873 3333332221100 0011345
Q ss_pred EEEEEeCCCCcCCCCCchHH
Q 038053 74 VVNVIDTPGLFDSSAGSEFV 93 (231)
Q Consensus 74 ~~~l~Dtpg~~~~~~~~~~~ 93 (231)
..++++.+.+++..+..+++
T Consensus 78 i~~v~q~~~l~~~~tv~enl 97 (352)
T PRK11144 78 IGYVFQDARLFPHYKVRGNL 97 (352)
T ss_pred EEEEcCCcccCCCCcHHHHH
Confidence 67889999988876655544
No 353
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.07 E-value=7.2e-11 Score=96.90 Aligned_cols=82 Identities=15% Similarity=0.079 Sum_probs=56.5
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcccc-ccCCCCcceeeeeeeE-----EeeCCcEE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKA-SADSSGVTKTCEMKTT-----VLKDGQVV 75 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~-~~~~~~~t~~~~~~~~-----~~~~~~~~ 75 (231)
++.|+++++|++++|++.+| .+++|+|+||||||||+++|+|...+.. .+..|.+..+...... ........
T Consensus 27 ~~~~~~~~il~~vsl~i~~G--e~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 104 (267)
T PRK14237 27 HVYYGKKEAIKGIDMQFEKN--KITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIG 104 (267)
T ss_pred EEEECCeeeEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceE
Confidence 45677888999999999999 9999999999999999999999875210 0123333322211100 00123467
Q ss_pred EEEeCCCCcC
Q 038053 76 NVIDTPGLFD 85 (231)
Q Consensus 76 ~l~Dtpg~~~ 85 (231)
++++.|.+++
T Consensus 105 ~v~q~~~~~~ 114 (267)
T PRK14237 105 MVFQRPNPFA 114 (267)
T ss_pred EEecCCcccc
Confidence 7888887765
No 354
>PLN03108 Rab family protein; Provisional
Probab=99.07 E-value=3.8e-09 Score=83.63 Aligned_cols=139 Identities=13% Similarity=0.119 Sum_probs=76.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
.+|+|+|++|+|||||+|.+++...... ..+....+........ .+ ..+.++||||... +....
T Consensus 7 ~kivivG~~gvGKStLi~~l~~~~~~~~--~~~ti~~~~~~~~i~~-~~~~i~l~l~Dt~G~~~-----------~~~~~ 72 (210)
T PLN03108 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPV--HDLTIGVEFGARMITI-DNKPIKLQIWDTAGQES-----------FRSIT 72 (210)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCC--CCCCccceEEEEEEEE-CCEEEEEEEEeCCCcHH-----------HHHHH
Confidence 6899999999999999999998753211 1121111111112222 22 3467899999543 11111
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhhh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKEY 162 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~~ 162 (231)
...+..+|++++|+|+++.-+..... .....|++ .+.++.+.. ...+..... +++.+|++
T Consensus 73 ~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~pii-iv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~ 151 (210)
T PLN03108 73 RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIM-LIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAK 151 (210)
T ss_pred HHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEE-EEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCC
Confidence 22335689999999998432222211 11123332 223332210 012222222 56778999
Q ss_pred hHhhHHHHHHHHHHH
Q 038053 163 SKQEISKLMGQMQES 177 (231)
Q Consensus 163 ~~~~i~~l~~~i~~~ 177 (231)
++.++.+++..+...
T Consensus 152 ~~~~v~e~f~~l~~~ 166 (210)
T PLN03108 152 TAQNVEEAFIKTAAK 166 (210)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999987666543
No 355
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.07 E-value=1.3e-10 Score=90.58 Aligned_cols=43 Identities=21% Similarity=0.169 Sum_probs=39.9
Q ss_pred CCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053 5 MGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF 49 (231)
Q Consensus 5 ~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~ 49 (231)
++++.++++++|++.+| .+++|+|+||||||||+++|+|...+
T Consensus 2 ~~~~~il~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~ 44 (190)
T TIGR01166 2 PGGPEVLKGLNFAAERG--EVLALLGANGAGKSTLLLHLNGLLRP 44 (190)
T ss_pred CCccceecceeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 46778999999999999 99999999999999999999999873
No 356
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.07 E-value=3e-09 Score=95.82 Aligned_cols=90 Identities=18% Similarity=0.252 Sum_probs=56.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEee-----------------CCcEEEEEeCCCCcCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLK-----------------DGQVVNVIDTPGLFDS 86 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~l~Dtpg~~~~ 86 (231)
+.|+++|++|+|||||+|.|++...... ..+++|........... ....+.++||||...
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v~~~--e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~- 81 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAVAKR--EAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEA- 81 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccc--cCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHh-
Confidence 5899999999999999999999854221 23334432111111110 012378999999543
Q ss_pred CCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHH
Q 038053 87 SAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEE 126 (231)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~ 126 (231)
+.......+..+|++++|+|+++++.....
T Consensus 82 ----------f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~ 111 (590)
T TIGR00491 82 ----------FTNLRKRGGALADLAILIVDINEGFKPQTQ 111 (590)
T ss_pred ----------HHHHHHHHHhhCCEEEEEEECCcCCCHhHH
Confidence 111122234678999999999876655543
No 357
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.07 E-value=3.8e-09 Score=82.29 Aligned_cols=138 Identities=16% Similarity=0.176 Sum_probs=77.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeee--eeEEeeCCc--EEEEEeCCCCcCCCCCchHHHHHHHHH
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEM--KTTVLKDGQ--VVNVIDTPGLFDSSAGSEFVGKEIVKR 100 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~~~~--~~~l~Dtpg~~~~~~~~~~~~~~~~~~ 100 (231)
+|+++|.+|+|||||++.+++..... .....|..... ..... .+. .+.++||||..... .+
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~---~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~--------~~--- 66 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLV---GPYQNTIGAAFVAKRMVV-GERVVTLGIWDTAGSERYE--------AM--- 66 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCC---cCcccceeeEEEEEEEEE-CCEEEEEEEEECCCchhhh--------hh---
Confidence 69999999999999999999865321 11112221111 11222 332 35588999964311 11
Q ss_pred HhhhcCCccEEEEEEECCCCCCHHHHH--------hcCCCCcHHHHHHHHHhh-------------HHHHHhhc-cchhh
Q 038053 101 IGLAKGGIHAVLVVFSVRSRFSQEEEA--------ANGGQPYTDEFLAELKRG-------------ATELRDQQ-AEVDS 158 (231)
Q Consensus 101 ~~~~~~~~~~il~vvd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~-------------~~~l~~~~-~~i~~ 158 (231)
....+..+|++++|+|+++.-+..... .....|++ .+.++.|.. ...+.... .+++.
T Consensus 67 ~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~pii-lv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 145 (193)
T cd04118 67 SRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIY-LCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFE 145 (193)
T ss_pred hHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEE-EEEEcccccccccccCccCHHHHHHHHHHcCCeEEE
Confidence 122346789999999998432222111 11123333 233333310 01111111 25677
Q ss_pred hhhhhHhhHHHHHHHHHHHH
Q 038053 159 LKEYSKQEISKLMGQMQESY 178 (231)
Q Consensus 159 is~~~~~~i~~l~~~i~~~~ 178 (231)
+|+.++.|+++++..+...+
T Consensus 146 ~Sa~~~~gv~~l~~~i~~~~ 165 (193)
T cd04118 146 TSSKTGQNVDELFQKVAEDF 165 (193)
T ss_pred EeCCCCCCHHHHHHHHHHHH
Confidence 89999999999998887654
No 358
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.06 E-value=7.5e-11 Score=91.17 Aligned_cols=46 Identities=28% Similarity=0.354 Sum_probs=42.2
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF 49 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~ 49 (231)
++.|+++.+|+++++++.+| .+++|+|+||+|||||+++|+|...+
T Consensus 6 ~~~~~~~~~l~~~~~~i~~G--~~~~l~G~nGsGKStLl~~i~G~~~~ 51 (180)
T cd03214 6 SVGYGGRTVLDDLSLSIEAG--EIVGILGPNGAGKSTLLKTLAGLLKP 51 (180)
T ss_pred EEEECCeeeEeeeEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 45677778999999999999 99999999999999999999999773
No 359
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.06 E-value=8e-11 Score=95.80 Aligned_cols=86 Identities=19% Similarity=0.097 Sum_probs=57.5
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc--cccccCCCCcceeeeee-e----EEeeCCcE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA--FKASADSSGVTKTCEMK-T----TVLKDGQV 74 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~--~~~~~~~~~~t~~~~~~-~----~~~~~~~~ 74 (231)
+++|+++.++++++|++.+| .+++|+|+||||||||+++|+|... +. .+..|.+....... . ........
T Consensus 12 ~~~~~~~~~l~~~s~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~-~~~~G~i~~~g~~~~~~~~~~~~~~~~i 88 (252)
T PRK14239 12 SVYYNKKKALNSVSLDFYPN--EITALIGPSGSGKSTLLRSINRMNDLNPE-VTITGSIVYNGHNIYSPRTDTVDLRKEI 88 (252)
T ss_pred EEEECCeeeeeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHhcccccCCC-CCccceEEECCEECcCcccchHhhhhcE
Confidence 56777788999999999999 9999999999999999999999742 21 00123232221110 0 00113457
Q ss_pred EEEEeCCCCcCCCCCch
Q 038053 75 VNVIDTPGLFDSSAGSE 91 (231)
Q Consensus 75 ~~l~Dtpg~~~~~~~~~ 91 (231)
.++++.|.+++ .+..+
T Consensus 89 ~~v~q~~~~~~-~tv~e 104 (252)
T PRK14239 89 GMVFQQPNPFP-MSIYE 104 (252)
T ss_pred EEEecCCccCc-CcHHH
Confidence 78888888776 34333
No 360
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.06 E-value=2.5e-09 Score=81.29 Aligned_cols=138 Identities=14% Similarity=0.097 Sum_probs=76.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhh
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLA 104 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~ 104 (231)
+|+++|.+|||||||+|.+.+...... .+..................+.++||||..... .. ....
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--------~~---~~~~ 67 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPEN---VPRVLPEITIPADVTPERVPTTIVDTSSRPQDR--------AN---LAAE 67 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcc---CCCcccceEeeeeecCCeEEEEEEeCCCchhhh--------HH---Hhhh
Confidence 689999999999999999988653211 111110001100011134567899999975411 11 1122
Q ss_pred cCCccEEEEEEECCCCCCHHHH---H------hcCCCCcHHHHHHHHHhhH-----------HHHHhhc---cchhhhhh
Q 038053 105 KGGIHAVLVVFSVRSRFSQEEE---A------ANGGQPYTDEFLAELKRGA-----------TELRDQQ---AEVDSLKE 161 (231)
Q Consensus 105 ~~~~~~il~vvd~~~~~~~~~~---~------~~~~~~~~~~~~~~~~~~~-----------~~l~~~~---~~i~~is~ 161 (231)
+..+|++++|+|+++.-+.... . .....|++ .+.++.|... ..+.... .+++.+|+
T Consensus 68 ~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pvi-iv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa 146 (166)
T cd01893 68 IRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPII-LVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSA 146 (166)
T ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE-EEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEecc
Confidence 4678999999999854333221 1 11223333 2334433110 1111111 25667899
Q ss_pred hhHhhHHHHHHHHHHH
Q 038053 162 YSKQEISKLMGQMQES 177 (231)
Q Consensus 162 ~~~~~i~~l~~~i~~~ 177 (231)
.++.|+++++..+.+.
T Consensus 147 ~~~~~v~~lf~~~~~~ 162 (166)
T cd01893 147 KTLINVSEVFYYAQKA 162 (166)
T ss_pred ccccCHHHHHHHHHHH
Confidence 9999999998887663
No 361
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.06 E-value=1e-10 Score=90.41 Aligned_cols=48 Identities=19% Similarity=0.234 Sum_probs=43.2
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcccc
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKA 51 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~ 51 (231)
|....++.+++++++.+.+| ...+|+||||+|||||++.|+|...+.+
T Consensus 8 s~~~~Gr~ll~~vsl~~~pG--ev~ailGPNGAGKSTlLk~LsGel~p~~ 55 (259)
T COG4559 8 SYSLAGRRLLDGVSLDLRPG--EVLAILGPNGAGKSTLLKALSGELSPDS 55 (259)
T ss_pred EEEeecceeccCcceeccCC--cEEEEECCCCccHHHHHHHhhCccCCCC
Confidence 34567899999999999999 9999999999999999999999988443
No 362
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.06 E-value=7.1e-11 Score=94.18 Aligned_cols=77 Identities=13% Similarity=0.122 Sum_probs=54.6
Q ss_pred cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-EE-----eeCCcEEEEEeCC
Q 038053 8 RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-TV-----LKDGQVVNVIDTP 81 (231)
Q Consensus 8 ~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-~~-----~~~~~~~~l~Dtp 81 (231)
..++++++|++.+| .+++|+|+||+|||||+++|+|...+ ..|.+........ .. ......+++++.|
T Consensus 18 ~~il~~vs~~i~~G--~~~~I~G~nGsGKStLl~~l~G~~~~----~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~ 91 (220)
T TIGR02982 18 KQVLFDINLEINPG--EIVILTGPSGSGKTTLLTLIGGLRSV----QEGSLKVLGQELYGASEKELVQLRRNIGYIFQAH 91 (220)
T ss_pred eeEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CCeEEEECCEEhHhcCHhHHHHHHhheEEEcCCh
Confidence 67999999999999 99999999999999999999998763 3333332221110 00 0124567788888
Q ss_pred CCcCCCCCc
Q 038053 82 GLFDSSAGS 90 (231)
Q Consensus 82 g~~~~~~~~ 90 (231)
.+++..+..
T Consensus 92 ~~~~~~t~~ 100 (220)
T TIGR02982 92 NLLGFLTAR 100 (220)
T ss_pred hhcCCCCHH
Confidence 887644433
No 363
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.06 E-value=1.6e-10 Score=94.11 Aligned_cols=82 Identities=18% Similarity=0.101 Sum_probs=55.9
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc-ccccCCCCcceeeeeee-----EEeeCCcEE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF-KASADSSGVTKTCEMKT-----TVLKDGQVV 75 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~-~~~~~~~~~t~~~~~~~-----~~~~~~~~~ 75 (231)
+++|+.+.++++++|++.+| .+++|+|+||+|||||+++|+|.... ...+..|.+........ .........
T Consensus 12 ~~~~~~~~~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 89 (252)
T PRK14255 12 HLFYGKFEALKGIDLDFNQN--EITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVG 89 (252)
T ss_pred EEEECCeeEEecceEEEcCC--CEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEE
Confidence 56788888999999999999 99999999999999999999997531 10001232222211100 000134577
Q ss_pred EEEeCCCCcC
Q 038053 76 NVIDTPGLFD 85 (231)
Q Consensus 76 ~l~Dtpg~~~ 85 (231)
++++.|.+++
T Consensus 90 ~~~q~~~~~~ 99 (252)
T PRK14255 90 MVFQQPNPFP 99 (252)
T ss_pred EEECCCccCC
Confidence 8899888776
No 364
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.06 E-value=1.1e-10 Score=96.09 Aligned_cols=82 Identities=16% Similarity=0.084 Sum_probs=56.2
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcccc-ccCCCCcceeeeeee-----EEeeCCcEE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKA-SADSSGVTKTCEMKT-----TVLKDGQVV 75 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~-~~~~~~~t~~~~~~~-----~~~~~~~~~ 75 (231)
+++|+++.+|++++|++.+| .+++|+|+||+|||||+++|+|...+.. .+..|.++....... .........
T Consensus 27 ~~~~~~~~~l~~vs~~i~~G--e~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~ 104 (274)
T PRK14265 27 KVFYGGFLALVDVHLKIPAK--KIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVG 104 (274)
T ss_pred EEEeCCeEEEeeeeeEEcCC--CEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEE
Confidence 56778788999999999999 9999999999999999999999864210 011333332221100 001134567
Q ss_pred EEEeCCCCcC
Q 038053 76 NVIDTPGLFD 85 (231)
Q Consensus 76 ~l~Dtpg~~~ 85 (231)
++++.|.+++
T Consensus 105 ~v~q~~~l~~ 114 (274)
T PRK14265 105 MVFQRPNPFP 114 (274)
T ss_pred EEccCCcccc
Confidence 8888888775
No 365
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.06 E-value=1.5e-10 Score=93.15 Aligned_cols=80 Identities=23% Similarity=0.144 Sum_probs=54.4
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-EEeeCCcEEEEEeC
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-TVLKDGQVVNVIDT 80 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~Dt 80 (231)
++.|++.. .+++|++.+| .+++|+|+||+|||||+++|+|...+ ..|.+........ .........++++.
T Consensus 8 ~~~~~~~~--~~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~----~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 79 (232)
T PRK10771 8 TWLYHHLP--MRFDLTVERG--ERVAILGPSGAGKSTLLNLIAGFLTP----ASGSLTLNGQDHTTTPPSRRPVSMLFQE 79 (232)
T ss_pred EEEECCcc--ceeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CCceEEECCeecCcCChhhccEEEEecc
Confidence 45676543 3899999999 99999999999999999999999873 3333332221100 00002346778888
Q ss_pred CCCcCCCCC
Q 038053 81 PGLFDSSAG 89 (231)
Q Consensus 81 pg~~~~~~~ 89 (231)
|++++..+.
T Consensus 80 ~~~~~~~tv 88 (232)
T PRK10771 80 NNLFSHLTV 88 (232)
T ss_pred cccccCCcH
Confidence 888765443
No 366
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.06 E-value=7.6e-11 Score=95.89 Aligned_cols=82 Identities=15% Similarity=0.038 Sum_probs=56.1
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc-ccccCCCCcceeeeeee---E--EeeCCcEE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF-KASADSSGVTKTCEMKT---T--VLKDGQVV 75 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~-~~~~~~~~~t~~~~~~~---~--~~~~~~~~ 75 (231)
++.|+.+.+++++++++.+| .+++|+|+||||||||+++|+|...+ ...+..|.+........ . ........
T Consensus 11 ~~~~~~~~~l~~~sl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~ 88 (251)
T PRK14251 11 HLSYGNYEALHGISLDFEEK--ELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVG 88 (251)
T ss_pred EEEECCeeeeeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEE
Confidence 56788888999999999999 99999999999999999999998641 00012232222221100 0 00133467
Q ss_pred EEEeCCCCcC
Q 038053 76 NVIDTPGLFD 85 (231)
Q Consensus 76 ~l~Dtpg~~~ 85 (231)
++++.|.+++
T Consensus 89 ~~~q~~~~~~ 98 (251)
T PRK14251 89 MVFQQPTPFP 98 (251)
T ss_pred EEecCCccCC
Confidence 8888888775
No 367
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.06 E-value=7e-11 Score=97.35 Aligned_cols=75 Identities=16% Similarity=0.046 Sum_probs=53.4
Q ss_pred CCCCC-CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE---EeeCCcEEEE
Q 038053 2 SSGMG-ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT---VLKDGQVVNV 77 (231)
Q Consensus 2 ~~~~~-~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~l 77 (231)
++.|+ +..++++++|++.+| .+++|+|+||||||||+++|+|...+ ..|.++.+...... ........++
T Consensus 11 ~~~~~~~~~~l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p----~~G~i~~~g~~~~~~~~~~~~~~i~~v 84 (274)
T PRK13647 11 HFRYKDGTKALKGLSLSIPEG--SKTALLGPNGAGKSTLLLHLNGIYLP----QRGRVKVMGREVNAENEKWVRSKVGLV 84 (274)
T ss_pred EEEeCCCCeeeeeEEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCC----CceEEEECCEECCCCCHHHHHhhEEEE
Confidence 55674 567999999999999 99999999999999999999999873 44444332211100 0002346778
Q ss_pred EeCCC
Q 038053 78 IDTPG 82 (231)
Q Consensus 78 ~Dtpg 82 (231)
++.|.
T Consensus 85 ~q~~~ 89 (274)
T PRK13647 85 FQDPD 89 (274)
T ss_pred ecChh
Confidence 88773
No 368
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.06 E-value=1.3e-09 Score=83.40 Aligned_cols=135 Identities=15% Similarity=0.109 Sum_probs=75.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeee-eeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
+|+++|++|+|||||++.+++..-. .....|..... ..... .+ ..+.++||||...... + .
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~----~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~--------~---~ 65 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFP----EEYVPTVFDHYAVSVTV-GGKQYLLGLYDTAGQEDYDR--------L---R 65 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC----CCCCCceeeeeEEEEEE-CCEEEEEEEEeCCCcccccc--------c---c
Confidence 6999999999999999999877531 11111221111 11222 23 2356899999654221 0 1
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhh---------------------HHHHHh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRG---------------------ATELRD 151 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~---------------------~~~l~~ 151 (231)
...+..+|+++++++..+.-+..+.. .....|++ .+.++.|.. +..+..
T Consensus 66 ~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~pii-vv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 144 (174)
T cd04135 66 PLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYL-LVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAK 144 (174)
T ss_pred cccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEE-EEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHH
Confidence 12346779999999987542221111 12233333 233443310 011222
Q ss_pred hcc--chhhhhhhhHhhHHHHHHHHHH
Q 038053 152 QQA--EVDSLKEYSKQEISKLMGQMQE 176 (231)
Q Consensus 152 ~~~--~i~~is~~~~~~i~~l~~~i~~ 176 (231)
..+ +++.+||++|.|+++++..+..
T Consensus 145 ~~~~~~~~e~Sa~~~~gi~~~f~~~~~ 171 (174)
T cd04135 145 EIGAHCYVECSALTQKGLKTVFDEAIL 171 (174)
T ss_pred HcCCCEEEEecCCcCCCHHHHHHHHHH
Confidence 222 4667899999999999887755
No 369
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.06 E-value=9.2e-11 Score=97.28 Aligned_cols=75 Identities=20% Similarity=0.061 Sum_probs=53.4
Q ss_pred CCCCCC-----cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE-----EeeC
Q 038053 2 SSGMGE-----RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT-----VLKD 71 (231)
Q Consensus 2 ~~~~~~-----~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~-----~~~~ 71 (231)
++.|+. +.++++++|++.+| .+++|+|+||||||||+++|+|...+ ..|.++.+...... ....
T Consensus 9 ~~~y~~~~~~~~~~l~~vs~~i~~G--e~~~i~G~nGaGKSTLl~~l~Gl~~p----~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 9 THIYMEGTPFEKKALDNVNIEIEDG--EFVGLIGHTGSGKSTLIQHLNGLLKP----TSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEECCCCCccccceeeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCC----CccEEEECCEECCCcCccHHHHh
Confidence 456653 46999999999999 99999999999999999999999873 44444333221100 0012
Q ss_pred CcEEEEEeCCC
Q 038053 72 GQVVNVIDTPG 82 (231)
Q Consensus 72 ~~~~~l~Dtpg 82 (231)
....++++.|.
T Consensus 83 ~~ig~v~q~~~ 93 (287)
T PRK13637 83 KKVGLVFQYPE 93 (287)
T ss_pred hceEEEecCch
Confidence 45677888874
No 370
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.05 E-value=1e-10 Score=96.21 Aligned_cols=82 Identities=15% Similarity=0.086 Sum_probs=56.4
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc-ccccCCCCcceeeeeee-----EEeeCCcEE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF-KASADSSGVTKTCEMKT-----TVLKDGQVV 75 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~-~~~~~~~~~t~~~~~~~-----~~~~~~~~~ 75 (231)
++.|++..+|++++|++.+| .+++|+|+||+|||||+++|+|.... ...+..|.++....... .........
T Consensus 31 ~~~~~~~~il~~vsl~i~~G--e~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 108 (271)
T PRK14238 31 NLWYGEDHALKNINLDIHEN--EVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVG 108 (271)
T ss_pred EEEECCcceeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEE
Confidence 45677788999999999999 99999999999999999999998641 00012333332221100 001134577
Q ss_pred EEEeCCCCcC
Q 038053 76 NVIDTPGLFD 85 (231)
Q Consensus 76 ~l~Dtpg~~~ 85 (231)
++++.|.+++
T Consensus 109 ~v~q~~~~~~ 118 (271)
T PRK14238 109 MVFQKPNPFP 118 (271)
T ss_pred EEecCCcccc
Confidence 8888888775
No 371
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.05 E-value=8.6e-11 Score=96.32 Aligned_cols=82 Identities=16% Similarity=0.083 Sum_probs=55.4
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccc-cCCCCcceeeeeee-----EEeeCCcEE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKAS-ADSSGVTKTCEMKT-----TVLKDGQVV 75 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~-~~~~~~t~~~~~~~-----~~~~~~~~~ 75 (231)
++.|+..++++++++++++| .+++|+|+||+|||||+++|+|...+... +..|.++....... .........
T Consensus 17 ~~~~~~~~il~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~ 94 (264)
T PRK14243 17 NVYYGSFLAVKNVWLDIPKN--QITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIG 94 (264)
T ss_pred EEEECCEEEeecceEEEcCC--CEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEE
Confidence 56677788999999999999 99999999999999999999997542100 12232322221100 001133567
Q ss_pred EEEeCCCCcC
Q 038053 76 NVIDTPGLFD 85 (231)
Q Consensus 76 ~l~Dtpg~~~ 85 (231)
++++.|.+++
T Consensus 95 ~v~q~~~~~~ 104 (264)
T PRK14243 95 MVFQKPNPFP 104 (264)
T ss_pred EEccCCcccc
Confidence 7888887765
No 372
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.05 E-value=1.2e-10 Score=95.89 Aligned_cols=83 Identities=16% Similarity=0.090 Sum_probs=56.8
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcccc-ccCCCCcceeeeeee-----EEeeCCcEE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKA-SADSSGVTKTCEMKT-----TVLKDGQVV 75 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~-~~~~~~~t~~~~~~~-----~~~~~~~~~ 75 (231)
++.|+++.++++++|++.+| .+++|+|+||+|||||+++|+|...+.. .+..|.+........ .........
T Consensus 32 ~~~~~~~~il~~vs~~i~~G--e~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~ 109 (272)
T PRK14236 32 NLFYGDKQALFDISMRIPKN--RVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVG 109 (272)
T ss_pred EEEECCeeEeeeEEEEEcCC--CEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEE
Confidence 56677788999999999999 9999999999999999999999865210 012333332221100 001134567
Q ss_pred EEEeCCCCcCC
Q 038053 76 NVIDTPGLFDS 86 (231)
Q Consensus 76 ~l~Dtpg~~~~ 86 (231)
++++.+.+++.
T Consensus 110 ~v~q~~~l~~~ 120 (272)
T PRK14236 110 MVFQRPNPFPK 120 (272)
T ss_pred EEecCCccCcc
Confidence 88888887763
No 373
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.05 E-value=1.2e-10 Score=92.88 Aligned_cols=78 Identities=17% Similarity=0.123 Sum_probs=53.9
Q ss_pred CCCCCC--cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee---EEeeCCcEEE
Q 038053 2 SSGMGE--RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT---TVLKDGQVVN 76 (231)
Q Consensus 2 ~~~~~~--~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~ 76 (231)
+++|++ +.++++++|++++| ..++|+|+||+|||||+++|+|...+ ..|.+........ .........+
T Consensus 9 ~~~~~~~~~~~l~~i~~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~----~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (221)
T cd03244 9 SLRYRPNLPPVLKNISFSIKPG--EKVGIVGRTGSGKSSLLLALFRLVEL----SSGSILIDGVDISKIGLHDLRSRISI 82 (221)
T ss_pred EEecCCCCcccccceEEEECCC--CEEEEECCCCCCHHHHHHHHHcCCCC----CCCEEEECCEEhHhCCHHHHhhhEEE
Confidence 456653 47999999999999 99999999999999999999999773 3333332221100 0001234667
Q ss_pred EEeCCCCcC
Q 038053 77 VIDTPGLFD 85 (231)
Q Consensus 77 l~Dtpg~~~ 85 (231)
+++.|.+++
T Consensus 83 ~~q~~~l~~ 91 (221)
T cd03244 83 IPQDPVLFS 91 (221)
T ss_pred ECCCCcccc
Confidence 777777654
No 374
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.05 E-value=1.2e-10 Score=95.28 Aligned_cols=87 Identities=15% Similarity=0.009 Sum_probs=58.8
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcccccc--CCCCcceeeeeee---E--EeeCCcE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASA--DSSGVTKTCEMKT---T--VLKDGQV 74 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~--~~~~~t~~~~~~~---~--~~~~~~~ 74 (231)
++.|++..+++++++++.+| .+++|+|+||+|||||+++|+|...+.. + ..|.+........ . .......
T Consensus 14 ~~~~~~~~il~~isl~i~~G--e~~~l~G~nGsGKSTLlk~l~Gl~~~~~-~~~~~G~i~~~g~~i~~~~~~~~~~~~~i 90 (259)
T PRK14260 14 SFYYNTSKAIEGISMDIYRN--KVTAIIGPSGCGKSTFIKTLNRISELEG-PVKVEGVVDFFGQNIYDPRININRLRRQI 90 (259)
T ss_pred EEEECCeEeecceEEEEcCC--CEEEEECCCCCCHHHHHHHHHhhcCccc-CCccceEEEECCEeccccccchHhhhhhe
Confidence 56777788999999999999 9999999999999999999999865210 0 1232332221100 0 0012457
Q ss_pred EEEEeCCCCcCCCCCchH
Q 038053 75 VNVIDTPGLFDSSAGSEF 92 (231)
Q Consensus 75 ~~l~Dtpg~~~~~~~~~~ 92 (231)
.++++.|.+++ .+..++
T Consensus 91 ~~v~q~~~l~~-~tv~en 107 (259)
T PRK14260 91 GMVFQRPNPFP-MSIYEN 107 (259)
T ss_pred EEEecccccCC-ccHHHH
Confidence 78889888776 444333
No 375
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.05 E-value=1e-10 Score=95.28 Aligned_cols=46 Identities=24% Similarity=0.208 Sum_probs=42.5
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF 49 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~ 49 (231)
++.|++..++++++|++++| .+++|+|+||||||||+++|+|...+
T Consensus 10 ~~~~~~~~~l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~ 55 (253)
T TIGR02323 10 SKSYGGGKGCRDVSFDLYPG--EVLGIVGESGSGKSTLLGCLAGRLAP 55 (253)
T ss_pred EEEeCCceEeecceEEEeCC--cEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 56777778999999999999 99999999999999999999999873
No 376
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.05 E-value=2.1e-10 Score=91.05 Aligned_cols=38 Identities=18% Similarity=0.222 Sum_probs=36.1
Q ss_pred ccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 9 VIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 9 ~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
.++++++|++++| .+++|+|+||||||||+++|+|...
T Consensus 1 ~vl~~vs~~i~~G--e~~~l~G~NGsGKSTLlk~i~Gl~~ 38 (213)
T PRK15177 1 VVLDKTDFVMGYH--EHIGILAAPGSGKTTLTRLLCGLDA 38 (213)
T ss_pred CeeeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCcc
Confidence 3689999999999 9999999999999999999999987
No 377
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.05 E-value=1.1e-10 Score=95.88 Aligned_cols=46 Identities=17% Similarity=0.205 Sum_probs=40.9
Q ss_pred CCCCCC--cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053 2 SSGMGE--RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF 49 (231)
Q Consensus 2 ~~~~~~--~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~ 49 (231)
++.|++ ..+++++++++++| .+++|+|+||+|||||+++|+|...+
T Consensus 14 ~~~~~~~~~~~l~~isl~i~~G--e~~~I~G~nGsGKSTLl~~i~Gl~~~ 61 (269)
T PRK13648 14 SFQYQSDASFTLKDVSFNIPKG--QWTSIVGHNGSGKSTIAKLMIGIEKV 61 (269)
T ss_pred EEEcCCCCCcceeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 456754 35899999999999 99999999999999999999999873
No 378
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.05 E-value=2e-10 Score=93.48 Aligned_cols=43 Identities=21% Similarity=0.326 Sum_probs=40.2
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGR 46 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~ 46 (231)
++.|+++.+|++++|++.+| .+++|+|+||||||||+++|+|.
T Consensus 14 ~~~~~~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 14 HASVNENEILKGLNLSINKG--EIHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred EEEeCCEEeeecceeEEcCC--cEEEEECCCCCCHHHHHHHHcCC
Confidence 55677778999999999999 99999999999999999999997
No 379
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.05 E-value=1.5e-10 Score=95.87 Aligned_cols=83 Identities=17% Similarity=0.138 Sum_probs=56.6
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcccc-ccCCCCcceeeeee-eE----EeeCCcEE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKA-SADSSGVTKTCEMK-TT----VLKDGQVV 75 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~-~~~~~~~t~~~~~~-~~----~~~~~~~~ 75 (231)
++.|++..+|++++|++.+| .+++|+|+||||||||+++|+|...+.. .+..|.+....... .. ........
T Consensus 46 ~~~~~~~~il~~is~~i~~G--e~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~ 123 (285)
T PRK14254 46 NVFYGDEQALDDVSMDIPEN--QVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIG 123 (285)
T ss_pred EEEECCEeeEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEE
Confidence 56677788999999999999 9999999999999999999999965210 01233333221110 00 01134567
Q ss_pred EEEeCCCCcCC
Q 038053 76 NVIDTPGLFDS 86 (231)
Q Consensus 76 ~l~Dtpg~~~~ 86 (231)
++++.|.+++.
T Consensus 124 ~v~q~~~l~~~ 134 (285)
T PRK14254 124 MVFQKPNPFPK 134 (285)
T ss_pred EEecCCccCcC
Confidence 88888877663
No 380
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.05 E-value=1.3e-10 Score=92.63 Aligned_cols=83 Identities=20% Similarity=0.271 Sum_probs=55.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccc---c-----------c---------------cCCCCcceeeeeeeEEeeCCcEE
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFK---A-----------S---------------ADSSGVTKTCEMKTTVLKDGQVV 75 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~---~-----------~---------------~~~~~~t~~~~~~~~~~~~~~~~ 75 (231)
+|+++|..|+|||||+..|+...... . + ....++|.+.......+ .+..+
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~-~~~~i 79 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFET-EKYRF 79 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEee-CCeEE
Confidence 48999999999999999985321100 0 0 11245555555555555 78889
Q ss_pred EEEeCCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCC
Q 038053 76 NVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRS 119 (231)
Q Consensus 76 ~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~ 119 (231)
.++||||..+ +...+......+|++++|+|+.+
T Consensus 80 ~liDtpG~~~-----------~~~~~~~~~~~~d~~i~VvDa~~ 112 (219)
T cd01883 80 TILDAPGHRD-----------FVPNMITGASQADVAVLVVDARK 112 (219)
T ss_pred EEEECCChHH-----------HHHHHHHHhhhCCEEEEEEECCC
Confidence 9999999643 11222233467899999999985
No 381
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.05 E-value=9.8e-11 Score=96.01 Aligned_cols=83 Identities=12% Similarity=0.073 Sum_probs=56.8
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccc-cCCCCcceeeeeee-----E--EeeCCc
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKAS-ADSSGVTKTCEMKT-----T--VLKDGQ 73 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~-~~~~~~t~~~~~~~-----~--~~~~~~ 73 (231)
+++|++++++++++|++.+| .+++|+|+||||||||+++|+|...+..+ +..|.++....... . ......
T Consensus 23 ~~~~~~~~vl~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~ 100 (265)
T PRK14252 23 NFYYGGYQALKNINMMVHEK--QVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMR 100 (265)
T ss_pred EEEECCeeeeeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhcc
Confidence 56777788999999999999 99999999999999999999998753110 12233332211000 0 011334
Q ss_pred EEEEEeCCCCcCC
Q 038053 74 VVNVIDTPGLFDS 86 (231)
Q Consensus 74 ~~~l~Dtpg~~~~ 86 (231)
..++++.|.+++.
T Consensus 101 i~~~~q~~~~~~~ 113 (265)
T PRK14252 101 ISMVFQKPNPFPK 113 (265)
T ss_pred EEEEccCCcCCcc
Confidence 6778888887763
No 382
>PLN03211 ABC transporter G-25; Provisional
Probab=99.05 E-value=1.7e-10 Score=105.50 Aligned_cols=87 Identities=20% Similarity=0.169 Sum_probs=60.6
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCC
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTP 81 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtp 81 (231)
++.|+++.+|+++++++.+| ..++|+|+||||||||+|+|+|...+.. ..|.+........... .....++.|.+
T Consensus 75 ~~~~~~~~iL~~vs~~i~~G--e~~aI~GpnGaGKSTLL~iLaG~~~~~~--~sG~I~inG~~~~~~~-~~~i~yv~Q~~ 149 (659)
T PLN03211 75 TRQIQERTILNGVTGMASPG--EILAVLGPSGSGKSTLLNALAGRIQGNN--FTGTILANNRKPTKQI-LKRTGFVTQDD 149 (659)
T ss_pred cccCCCCeeeeCCEEEEECC--EEEEEECCCCCCHHHHHHHHhCCCCCCc--eeEEEEECCEECchhh-ccceEEECccc
Confidence 45788889999999999999 9999999999999999999999875310 1232332221111111 23467788888
Q ss_pred CCcCCCCCchHH
Q 038053 82 GLFDSSAGSEFV 93 (231)
Q Consensus 82 g~~~~~~~~~~~ 93 (231)
.+++..++.+.+
T Consensus 150 ~l~~~lTV~E~l 161 (659)
T PLN03211 150 ILYPHLTVRETL 161 (659)
T ss_pred ccCCcCCHHHHH
Confidence 777665555443
No 383
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.04 E-value=1.4e-10 Score=94.82 Aligned_cols=46 Identities=15% Similarity=0.103 Sum_probs=42.3
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF 49 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~ 49 (231)
++.|++..+|++++|++++| .+++|+|+||+|||||+++|+|...+
T Consensus 14 ~~~~~~~~il~~is~~i~~G--e~~~I~G~nGsGKSTLl~~l~Gl~~~ 59 (261)
T PRK14258 14 SFYYDTQKILEGVSMEIYQS--KVTAIIGPSGCGKSTFLKCLNRMNEL 59 (261)
T ss_pred EEEeCCeeEeeceEEEEcCC--cEEEEECCCCCCHHHHHHHHhcccCC
Confidence 46677778999999999999 99999999999999999999999863
No 384
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.04 E-value=1.6e-10 Score=104.27 Aligned_cols=45 Identities=27% Similarity=0.401 Sum_probs=42.1
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
++.|+++.+|++++|++.+| .+++|+|+||||||||+++|+|...
T Consensus 331 ~~~~~~~~~l~~isl~i~~G--e~~~l~G~NGsGKSTLl~~i~G~~~ 375 (556)
T PRK11819 331 SKSFGDRLLIDDLSFSLPPG--GIVGIIGPNGAGKSTLFKMITGQEQ 375 (556)
T ss_pred EEEECCeeeecceeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56778888999999999999 9999999999999999999999987
No 385
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.04 E-value=6.2e-09 Score=78.79 Aligned_cols=135 Identities=16% Similarity=0.162 Sum_probs=75.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeee--eeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHH
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEM--KTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKR 100 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~ 100 (231)
+|+++|++|+|||||++.+++.... ..+..|..... ..... .+ ..+.+.||||.... ...
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~----~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~-----------~~~ 65 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFH----SSHISTIGVDFKMKTIEV-DGIKVRIQIWDTAGQERY-----------QTI 65 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCC----CCCCCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHhH-----------Hhh
Confidence 6899999999999999888876541 12222222211 12222 22 35668999995431 111
Q ss_pred HhhhcCCccEEEEEEECCCCCCHHHHH--------hc-CCCCcHHHHHHHHHh---------hHHHHHhhc-cchhhhhh
Q 038053 101 IGLAKGGIHAVLVVFSVRSRFSQEEEA--------AN-GGQPYTDEFLAELKR---------GATELRDQQ-AEVDSLKE 161 (231)
Q Consensus 101 ~~~~~~~~~~il~vvd~~~~~~~~~~~--------~~-~~~~~~~~~~~~~~~---------~~~~l~~~~-~~i~~is~ 161 (231)
....+..+|++++++|.++.-+-.+.. .. ...|++ .+.++.|. +...+.... .+.+.+|+
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~ii-lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa 144 (161)
T cd04117 66 TKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKI-LIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSA 144 (161)
T ss_pred HHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEE-EEEECcccccccCCCHHHHHHHHHHcCCEEEEEeC
Confidence 222346789999999998543322221 11 112222 12222221 111222222 26677899
Q ss_pred hhHhhHHHHHHHHHH
Q 038053 162 YSKQEISKLMGQMQE 176 (231)
Q Consensus 162 ~~~~~i~~l~~~i~~ 176 (231)
+++.|+++++..+.+
T Consensus 145 ~~~~~v~~~f~~l~~ 159 (161)
T cd04117 145 CTNSNIKESFTRLTE 159 (161)
T ss_pred CCCCCHHHHHHHHHh
Confidence 999999999887754
No 386
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.04 E-value=1.1e-10 Score=95.38 Aligned_cols=46 Identities=22% Similarity=0.187 Sum_probs=42.6
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF 49 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~ 49 (231)
++.|+++.++++++|++.+| .+++|+|+||||||||+++|+|...+
T Consensus 13 ~~~~~~~~il~~is~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p 58 (258)
T PRK11701 13 TKLYGPRKGCRDVSFDLYPG--EVLGIVGESGSGKTTLLNALSARLAP 58 (258)
T ss_pred EEEcCCceeeeeeeEEEeCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 56777788999999999999 99999999999999999999999873
No 387
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.04 E-value=1.4e-10 Score=103.41 Aligned_cols=85 Identities=13% Similarity=0.032 Sum_probs=57.6
Q ss_pred CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE----EeeCCcEEE
Q 038053 1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT----VLKDGQVVN 76 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~ 76 (231)
+++.|++..++++++|++.+| .+++|+|+||||||||+++|+|...+. +..|.+......... ........+
T Consensus 7 l~~~~~~~~il~~isl~i~~G--e~~~liG~nGsGKSTLl~~i~G~~~~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 82 (500)
T TIGR02633 7 IVKTFGGVKALDGIDLEVRPG--ECVGLCGENGAGKSTLMKILSGVYPHG--TWDGEIYWSGSPLKASNIRDTERAGIVI 82 (500)
T ss_pred EEEEeCCeEeecceEEEEeCC--cEEEEECCCCCCHHHHHHHHhCCCCCC--CCCeEEEECCEECCCCCHHHHHhCCEEE
Confidence 356788888999999999999 999999999999999999999987631 022322222111000 000234677
Q ss_pred EEeCCCCcCCCCC
Q 038053 77 VIDTPGLFDSSAG 89 (231)
Q Consensus 77 l~Dtpg~~~~~~~ 89 (231)
+++.|.+++..+.
T Consensus 83 v~q~~~~~~~~tv 95 (500)
T TIGR02633 83 IHQELTLVPELSV 95 (500)
T ss_pred EeeccccCCCCcH
Confidence 8888776654433
No 388
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.04 E-value=1.7e-10 Score=92.98 Aligned_cols=85 Identities=21% Similarity=0.117 Sum_probs=58.6
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE-EeeCCcEEEEEeC
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT-VLKDGQVVNVIDT 80 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~l~Dt 80 (231)
++.|++. +++++++++.+| .+++|+|+||+|||||+++|+|...+ ..|.+......... ........++++.
T Consensus 7 ~~~~~~~-~l~~is~~i~~G--e~~~i~G~nG~GKStLl~~l~G~~~p----~~G~v~i~g~~~~~~~~~~~~i~~~~q~ 79 (235)
T cd03299 7 SKDWKEF-KLKNVSLEVERG--DYFVILGPTGSGKSVLLETIAGFIKP----DSGKILLNGKDITNLPPEKRDISYVPQN 79 (235)
T ss_pred EEEeCCc-eeeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCcCC----CceEEEECCEEcCcCChhHcCEEEEeec
Confidence 4566654 899999999999 99999999999999999999999773 34433332211000 0012356778888
Q ss_pred CCCcCCCCCchHH
Q 038053 81 PGLFDSSAGSEFV 93 (231)
Q Consensus 81 pg~~~~~~~~~~~ 93 (231)
+.+++..+..+++
T Consensus 80 ~~~~~~~t~~e~l 92 (235)
T cd03299 80 YALFPHMTVYKNI 92 (235)
T ss_pred CccCCCccHHHHH
Confidence 8887655544433
No 389
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.04 E-value=2.2e-10 Score=91.24 Aligned_cols=45 Identities=20% Similarity=0.231 Sum_probs=40.6
Q ss_pred CCCC-CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053 3 SGMG-ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF 49 (231)
Q Consensus 3 ~~~~-~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~ 49 (231)
++|+ +..++++++|++++| .+++|+|+||+|||||+++|+|...+
T Consensus 8 ~~~~~~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~ 53 (218)
T cd03290 8 FSWGSGLATLSNINIRIPTG--QLTMIVGQVGCGKSSLLLAILGEMQT 53 (218)
T ss_pred EecCCCCcceeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhccCCC
Confidence 4564 567999999999999 99999999999999999999999863
No 390
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.04 E-value=2.1e-10 Score=94.22 Aligned_cols=41 Identities=29% Similarity=0.411 Sum_probs=38.4
Q ss_pred CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053 7 ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF 49 (231)
Q Consensus 7 ~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~ 49 (231)
++.++++++|++.+| .+++|+|+||+|||||+++|+|...+
T Consensus 24 ~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p 64 (268)
T PRK10419 24 HQTVLNNVSLSLKSG--ETVALLGRSGCGKSTLARLLVGLESP 64 (268)
T ss_pred ceeeEeceeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 468999999999999 99999999999999999999999763
No 391
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=99.04 E-value=1.9e-10 Score=86.46 Aligned_cols=60 Identities=32% Similarity=0.346 Sum_probs=35.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccc-----cCCCCcce-eeeeeeEEeeCCcEEEEEeCCCCcCCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKAS-----ADSSGVTK-TCEMKTTVLKDGQVVNVIDTPGLFDSS 87 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~-----~~~~~~t~-~~~~~~~~~~~~~~~~l~Dtpg~~~~~ 87 (231)
.+++|+|++|||||||+|.|++......+ ...|..|+ ...... -....+++||||+.+..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~----l~~g~~iIDTPGf~~~~ 101 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFP----LPDGGYIIDTPGFRSFG 101 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEE----ETTSEEEECSHHHHT--
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEe----cCCCcEEEECCCCCccc
Confidence 79999999999999999999998543322 12232232 222221 23457899999997643
No 392
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.04 E-value=9.7e-11 Score=96.75 Aligned_cols=74 Identities=19% Similarity=0.156 Sum_probs=51.9
Q ss_pred CCCCCC---cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE---EeeCCcEE
Q 038053 2 SSGMGE---RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT---VLKDGQVV 75 (231)
Q Consensus 2 ~~~~~~---~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~ 75 (231)
++.|++ ..+|+++++++.+| .+++|+|+||||||||+++|+|...+ ..|.+..+...... ........
T Consensus 11 ~~~~~~~~~~~~l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p----~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13650 11 TFKYKEDQEKYTLNDVSFHVKQG--EWLSIIGHNGSGKSTTVRLIDGLLEA----ESGQIIIDGDLLTEENVWDIRHKIG 84 (279)
T ss_pred EEEcCCCCcCeeeeeeEEEEeCC--CEEEEECCCCCCHHHHHHHHhcCCCC----CCcEEEECCEECCcCcHHHHHhhce
Confidence 456653 45999999999999 99999999999999999999999873 44444333221100 00023456
Q ss_pred EEEeCC
Q 038053 76 NVIDTP 81 (231)
Q Consensus 76 ~l~Dtp 81 (231)
++++.|
T Consensus 85 ~v~q~~ 90 (279)
T PRK13650 85 MVFQNP 90 (279)
T ss_pred EEEcCh
Confidence 777776
No 393
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.04 E-value=2.5e-09 Score=85.47 Aligned_cols=96 Identities=9% Similarity=0.070 Sum_probs=57.8
Q ss_pred CCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhh
Q 038053 71 DGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRG 145 (231)
Q Consensus 71 ~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 145 (231)
.+..+.++||||... ....+...+. ...+|.+++|+|+..++...+.. ...+.|++ .+++++|..
T Consensus 82 ~~~~i~liDtpG~~~-------~~~~~~~~~~--~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~i-vvvNK~D~~ 151 (224)
T cd04165 82 SSKLVTFIDLAGHER-------YLKTTLFGLT--GYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVF-VVVTKIDLA 151 (224)
T ss_pred CCcEEEEEECCCcHH-------HHHHHHHhhc--ccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEE-EEEECcccc
Confidence 467889999999643 1122222111 13689999999998788777655 23334443 233333310
Q ss_pred --------HHHHHhhc------------------------------cchhhhhhhhHhhHHHHHHHHHH
Q 038053 146 --------ATELRDQQ------------------------------AEVDSLKEYSKQEISKLMGQMQE 176 (231)
Q Consensus 146 --------~~~l~~~~------------------------------~~i~~is~~~~~~i~~l~~~i~~ 176 (231)
...+.+.+ .|++.+|+.+|.|++.|...+..
T Consensus 152 ~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 152 PANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred CHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 02222222 17777899999999998877643
No 394
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.03 E-value=2e-10 Score=103.01 Aligned_cols=45 Identities=13% Similarity=0.302 Sum_probs=42.2
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
++.|+++.+|++++|++.+| .+++|+|+||||||||+++|+|...
T Consensus 326 ~~~~~~~~~l~~is~~i~~G--e~~~l~G~NGsGKSTLl~~i~G~~~ 370 (530)
T PRK15064 326 TKGFDNGPLFKNLNLLLEAG--ERLAIIGENGVGKTTLLRTLVGELE 370 (530)
T ss_pred EEeeCCceeecCcEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56788888999999999999 9999999999999999999999976
No 395
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.03 E-value=1.3e-09 Score=86.81 Aligned_cols=140 Identities=12% Similarity=0.063 Sum_probs=78.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee--eEEe-eCCcEEEEEeCCCCcCCCCCchHHHHHHHH
Q 038053 23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK--TTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVK 99 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~--~~~~-~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~ 99 (231)
..+|+++|.+|+|||||++.++..... .....|...... .... .....+.+.||||..... .+
T Consensus 13 ~~Ki~vvG~~gvGKTsli~~~~~~~f~----~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~-- 78 (219)
T PLN03071 13 SFKLVIVGDGGTGKTTFVKRHLTGEFE----KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG--------GL-- 78 (219)
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCCCC----CccCCccceeEEEEEEEECCeEEEEEEEECCCchhhh--------hh--
Confidence 379999999999999999987654321 111122211111 1111 123577899999965411 11
Q ss_pred HHhhhcCCccEEEEEEECCCCCCHHHHH--------hcCCCCcHHHHHHHHHhhH-----HHH--Hhhc-cchhhhhhhh
Q 038053 100 RIGLAKGGIHAVLVVFSVRSRFSQEEEA--------ANGGQPYTDEFLAELKRGA-----TEL--RDQQ-AEVDSLKEYS 163 (231)
Q Consensus 100 ~~~~~~~~~~~il~vvd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~-----~~l--~~~~-~~i~~is~~~ 163 (231)
....+..+|++++|+|+++..+..... .....|++ .+.++.|... ..+ .... -+.+.+||++
T Consensus 79 -~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~pii-lvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~ 156 (219)
T PLN03071 79 -RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV-LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKS 156 (219)
T ss_pred -hHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEE-EEEEchhhhhccCCHHHHHHHHhcCCEEEEcCCCC
Confidence 122346789999999998654333221 11223333 2233333110 111 1111 1456789999
Q ss_pred HhhHHHHHHHHHHHH
Q 038053 164 KQEISKLMGQMQESY 178 (231)
Q Consensus 164 ~~~i~~l~~~i~~~~ 178 (231)
|.|+.+++..+....
T Consensus 157 ~~~i~~~f~~l~~~~ 171 (219)
T PLN03071 157 NYNFEKPFLYLARKL 171 (219)
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999988887654
No 396
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.03 E-value=1.8e-10 Score=94.30 Aligned_cols=82 Identities=17% Similarity=0.086 Sum_probs=56.9
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccc-cCCCCcceeeeeee---E--EeeCCcEE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKAS-ADSSGVTKTCEMKT---T--VLKDGQVV 75 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~-~~~~~~t~~~~~~~---~--~~~~~~~~ 75 (231)
++.|++..++++++|++++| .+++|+|+||+|||||+++|+|...+..+ +..|.++....... . ........
T Consensus 15 ~~~~~~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~ 92 (261)
T PRK14263 15 KIFYGNFMAVRDSHVPIRKN--EITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIG 92 (261)
T ss_pred EEEeCCEEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceE
Confidence 45678889999999999999 99999999999999999999999763110 12333333221110 0 01134467
Q ss_pred EEEeCCCCcC
Q 038053 76 NVIDTPGLFD 85 (231)
Q Consensus 76 ~l~Dtpg~~~ 85 (231)
++++.|.++.
T Consensus 93 ~v~q~~~~~~ 102 (261)
T PRK14263 93 MVFQQPNPFS 102 (261)
T ss_pred EEecCCcccc
Confidence 8888887764
No 397
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.03 E-value=2.2e-10 Score=104.86 Aligned_cols=47 Identities=17% Similarity=0.322 Sum_probs=43.1
Q ss_pred CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053 1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF 49 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~ 49 (231)
+++.|+++.+|++++|++.+| .+++|+|+||||||||+++|+|...+
T Consensus 325 l~~~~~~~~il~~vsl~i~~G--e~~~l~G~NGsGKSTLlk~l~G~~~p 371 (635)
T PRK11147 325 VNYQIDGKQLVKDFSAQVQRG--DKIALIGPNGCGKTTLLKLMLGQLQA 371 (635)
T ss_pred eEEEECCeEEEcCcEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 356788888999999999999 99999999999999999999999763
No 398
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.03 E-value=2.7e-10 Score=90.48 Aligned_cols=83 Identities=14% Similarity=0.121 Sum_probs=57.2
Q ss_pred CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-------EEeeCCc
Q 038053 1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-------TVLKDGQ 73 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-------~~~~~~~ 73 (231)
++++|++..+ +++|++.+ .+++|+|+||+|||||+++|+|...+ ..|.+........ .......
T Consensus 6 l~~~~~~~~~--~vsl~i~~---e~~~i~G~nGsGKSTLl~~l~G~~~~----~~G~i~~~g~~~~~~~~~~~~~~~~~~ 76 (214)
T cd03297 6 IEKRLPDFTL--KIDFDLNE---EVTGIFGASGAGKSTLLRCIAGLEKP----DGGTIVLNGTVLFDSRKKINLPPQQRK 76 (214)
T ss_pred eeEecCCeee--CceEEEcc---eeEEEECCCCCCHHHHHHHHhCCCCC----CCceEEECCEecccccchhhhhhHhhc
Confidence 4789998876 99999987 59999999999999999999999873 3333332221100 0001235
Q ss_pred EEEEEeCCCCcCCCCCchH
Q 038053 74 VVNVIDTPGLFDSSAGSEF 92 (231)
Q Consensus 74 ~~~l~Dtpg~~~~~~~~~~ 92 (231)
..++++.+.+++..+..++
T Consensus 77 i~~~~q~~~~~~~~t~~~~ 95 (214)
T cd03297 77 IGLVFQQYALFPHLNVREN 95 (214)
T ss_pred EEEEecCCccCCCCCHHHH
Confidence 6788999888765554433
No 399
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.03 E-value=8.6e-11 Score=97.39 Aligned_cols=82 Identities=20% Similarity=0.140 Sum_probs=55.0
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc-ccccCCCCcceeeeeee-E----EeeCCcEE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF-KASADSSGVTKTCEMKT-T----VLKDGQVV 75 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~-~~~~~~~~~t~~~~~~~-~----~~~~~~~~ 75 (231)
+++|++..++++++|++.+| .+++|+|+||||||||+++|+|.... ...+..|.++....... . ........
T Consensus 46 ~~~~~~~~il~~vsl~i~~G--e~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~ 123 (286)
T PRK14275 46 SIYYGEFEAVKKVNADILSK--YVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIG 123 (286)
T ss_pred EEEECCEEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEE
Confidence 45677778999999999999 99999999999999999999997420 00012232322221100 0 00134567
Q ss_pred EEEeCCCCcC
Q 038053 76 NVIDTPGLFD 85 (231)
Q Consensus 76 ~l~Dtpg~~~ 85 (231)
++++.|.+++
T Consensus 124 ~v~q~~~l~~ 133 (286)
T PRK14275 124 MVFQKPNPFP 133 (286)
T ss_pred EECCCCCCCc
Confidence 8888888775
No 400
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.03 E-value=1.9e-10 Score=91.64 Aligned_cols=78 Identities=19% Similarity=0.077 Sum_probs=54.1
Q ss_pred CCCCCC--cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE---EeeCCcEEE
Q 038053 2 SSGMGE--RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT---VLKDGQVVN 76 (231)
Q Consensus 2 ~~~~~~--~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~ 76 (231)
+++|++ +.++++++|++++| .+++|+|+||+|||||+++|+|...+ ..|.++........ ........+
T Consensus 9 ~~~~~~~~~~~l~~i~~~i~~G--~~~~i~G~nGsGKSTLl~~i~G~~~~----~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (220)
T cd03245 9 SFSYPNQEIPALDNVSLTIRAG--EKVAIIGRVGSGKSTLLKLLAGLYKP----TSGSVLLDGTDIRQLDPADLRRNIGY 82 (220)
T ss_pred EEEcCCCCcccccceEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCcCC----CCCeEEECCEEhHHCCHHHHHhhEEE
Confidence 456754 56999999999999 99999999999999999999999863 33433332211000 000234567
Q ss_pred EEeCCCCcC
Q 038053 77 VIDTPGLFD 85 (231)
Q Consensus 77 l~Dtpg~~~ 85 (231)
+++.|.+++
T Consensus 83 ~~q~~~~~~ 91 (220)
T cd03245 83 VPQDVTLFY 91 (220)
T ss_pred eCCCCcccc
Confidence 777776654
No 401
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.03 E-value=1.3e-10 Score=96.37 Aligned_cols=74 Identities=19% Similarity=0.102 Sum_probs=52.6
Q ss_pred CCCCCC-----cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE-------Ee
Q 038053 2 SSGMGE-----RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT-------VL 69 (231)
Q Consensus 2 ~~~~~~-----~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~-------~~ 69 (231)
++.|+. ..+|+++++++.+| .+++|+|+||||||||+++|+|... +..|.+..+...... ..
T Consensus 9 ~~~y~~~~~~~~~~l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~L~Gl~~----p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 9 SYTYQKGTPYEHQAIHDVNTEFEQG--KYYAIVGQTGSGKSTLIQNINALLK----PTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEECCCCccccCceeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCC----CCCcEEEECCEECccccccchHHH
Confidence 455643 46999999999999 9999999999999999999999987 344444433221100 00
Q ss_pred eCCcEEEEEeCC
Q 038053 70 KDGQVVNVIDTP 81 (231)
Q Consensus 70 ~~~~~~~l~Dtp 81 (231)
.....+++++.|
T Consensus 83 ~~~~ig~v~q~~ 94 (286)
T PRK13646 83 VRKRIGMVFQFP 94 (286)
T ss_pred HHhheEEEecCh
Confidence 123567788876
No 402
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.02 E-value=1.4e-10 Score=94.36 Aligned_cols=83 Identities=17% Similarity=0.103 Sum_probs=56.6
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcccc-ccCCCCcceeeeee-eEE----eeCCcEE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKA-SADSSGVTKTCEMK-TTV----LKDGQVV 75 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~-~~~~~~~t~~~~~~-~~~----~~~~~~~ 75 (231)
++.|++.+++++++|++.+| ..++|+|+||||||||+++|+|...+.. .+..|.++...... ... .......
T Consensus 12 ~~~~~~~~~l~~is~~i~~G--e~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~ 89 (251)
T PRK14244 12 NLWYGSKQILFDINLDIYKR--EVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVG 89 (251)
T ss_pred EEEECCeeeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEE
Confidence 45677788999999999999 9999999999999999999999864210 01233333222110 000 0134567
Q ss_pred EEEeCCCCcCC
Q 038053 76 NVIDTPGLFDS 86 (231)
Q Consensus 76 ~l~Dtpg~~~~ 86 (231)
++++.|.+++.
T Consensus 90 ~v~q~~~~~~~ 100 (251)
T PRK14244 90 MVFQKPNPFPK 100 (251)
T ss_pred EEecCcccccC
Confidence 88888887763
No 403
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.02 E-value=6.9e-10 Score=83.67 Aligned_cols=55 Identities=27% Similarity=0.427 Sum_probs=42.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 83 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~ 83 (231)
.+++++|.||+|||||+|.|++......+ ..+++|+...... .+..++++||||+
T Consensus 101 ~~~~~~G~~~~GKstlin~l~~~~~~~~~-~~~~~t~~~~~~~----~~~~~~liDtPG~ 155 (155)
T cd01849 101 ITVGVIGYPNVGKSSVINALLNKLKLKVG-NVPGTTTSQQEVK----LDNKIKLLDTPGI 155 (155)
T ss_pred cEEEEEccCCCCHHHHHHHHHcccccccc-CCCCcccceEEEE----ecCCEEEEECCCC
Confidence 79999999999999999999998754442 4456666554432 2356889999996
No 404
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.02 E-value=1.4e-10 Score=96.13 Aligned_cols=74 Identities=19% Similarity=0.043 Sum_probs=53.2
Q ss_pred CCCCCC-----cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE-------Ee
Q 038053 2 SSGMGE-----RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT-------VL 69 (231)
Q Consensus 2 ~~~~~~-----~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~-------~~ 69 (231)
++.|++ +.+++++++++.+| .+++|+|+||+|||||+++|+|...+ ..|.++.+...... ..
T Consensus 9 ~~~~~~~~~~~~~~l~~vsl~i~~G--e~~~iiG~NGaGKSTLl~~l~Gl~~p----~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13641 9 DYIYSPGTPMEKKGLDNISFELEEG--SFVALVGHTGSGKSTLMQHFNALLKP----SSGTITIAGYHITPETGNKNLKK 82 (287)
T ss_pred EEEcCCCCCccccceeeeEEEEeCC--CEEEEECCCCCCHHHHHHHHhcCCCC----CCcEEEECCEECccccccchHHH
Confidence 566763 46999999999999 99999999999999999999999873 44444433321100 00
Q ss_pred eCCcEEEEEeCC
Q 038053 70 KDGQVVNVIDTP 81 (231)
Q Consensus 70 ~~~~~~~l~Dtp 81 (231)
.....+++++.|
T Consensus 83 ~~~~ig~v~q~~ 94 (287)
T PRK13641 83 LRKKVSLVFQFP 94 (287)
T ss_pred HHhceEEEEeCh
Confidence 123467788877
No 405
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.02 E-value=1.4e-10 Score=95.92 Aligned_cols=46 Identities=22% Similarity=0.169 Sum_probs=41.0
Q ss_pred CCCCCC--cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053 2 SSGMGE--RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF 49 (231)
Q Consensus 2 ~~~~~~--~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~ 49 (231)
++.|++ ++++++++|++++| .+++|+|+||||||||+++|+|...+
T Consensus 12 ~~~~~~~~~~~l~~v~l~i~~G--e~~~I~G~nGaGKSTLl~~l~G~~~p 59 (282)
T PRK13640 12 SFTYPDSKKPALNDISFSIPRG--SWTALIGHNGSGKSTISKLINGLLLP 59 (282)
T ss_pred EEEcCCCCccceeeEEEEEcCC--CEEEEECCCCCcHHHHHHHHhcccCC
Confidence 456753 46999999999999 99999999999999999999999863
No 406
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.02 E-value=1.7e-10 Score=92.77 Aligned_cols=46 Identities=24% Similarity=0.174 Sum_probs=41.4
Q ss_pred CCCCCCc--ccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053 2 SSGMGER--VIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF 49 (231)
Q Consensus 2 ~~~~~~~--~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~ 49 (231)
++.|++. .++++++|++++| .+++|+|+||||||||+++|+|...+
T Consensus 7 ~~~~~~~~~~~l~~i~~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p 54 (234)
T cd03251 7 TFRYPGDGPPVLRDISLDIPAG--ETVALVGPSGSGKSTLVNLIPRFYDV 54 (234)
T ss_pred EEEeCCCCccceeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhccccC
Confidence 4567654 7999999999999 99999999999999999999999873
No 407
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.01 E-value=1.6e-09 Score=89.82 Aligned_cols=60 Identities=28% Similarity=0.424 Sum_probs=46.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSA 88 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~ 88 (231)
.+++++|.||+|||||+|+|+|.....++ ..+++|+..+... .+..++++||||+.....
T Consensus 122 ~~~~~~G~pnvGKSsliN~l~~~~~~~~~-~~~g~T~~~~~~~----~~~~~~l~DtPGi~~~~~ 181 (287)
T PRK09563 122 IRAMIIGIPNVGKSTLINRLAGKKIAKTG-NRPGVTKAQQWIK----LGKGLELLDTPGILWPKL 181 (287)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCccccC-CCCCeEEEEEEEE----eCCcEEEEECCCcCCCCC
Confidence 78999999999999999999998765553 5677777654322 244688999999976543
No 408
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.01 E-value=1.1e-09 Score=98.98 Aligned_cols=142 Identities=15% Similarity=0.226 Sum_probs=86.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccc-------c------CCCCcceeeeeeeEEee----CCcEEEEEeCCCCcCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKAS-------A------DSSGVTKTCEMKTTVLK----DGQVVNVIDTPGLFDS 86 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~-------~------~~~~~t~~~~~~~~~~~----~~~~~~l~Dtpg~~~~ 86 (231)
.+|+|+|..|+|||||++.|+........ . ...++|.........+. ....+.++||||..+.
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 68999999999999999999865321110 0 11245544433333331 1256789999998652
Q ss_pred CCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhhH-------HHHHhhcc
Q 038053 87 SAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRGA-------TELRDQQA 154 (231)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-------~~l~~~~~ 154 (231)
... ....+..+|++++|+|++++.+..... .....+++ .++|++|... .++.+.++
T Consensus 84 -------~~~----v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiI-iViNKiDl~~~~~~~~~~el~~~lg 151 (595)
T TIGR01393 84 -------SYE----VSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEII-PVINKIDLPSADPERVKKEIEEVIG 151 (595)
T ss_pred -------HHH----HHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEE-EEEECcCCCccCHHHHHHHHHHHhC
Confidence 112 223345679999999998776655433 22233433 3445544210 23333332
Q ss_pred ----chhhhhhhhHhhHHHHHHHHHHH
Q 038053 155 ----EVDSLKEYSKQEISKLMGQMQES 177 (231)
Q Consensus 155 ----~i~~is~~~~~~i~~l~~~i~~~ 177 (231)
.++++||++|.|++++++.+...
T Consensus 152 ~~~~~vi~vSAktG~GI~~Lle~I~~~ 178 (595)
T TIGR01393 152 LDASEAILASAKTGIGIEEILEAIVKR 178 (595)
T ss_pred CCcceEEEeeccCCCCHHHHHHHHHHh
Confidence 36789999999999998887654
No 409
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.01 E-value=4.6e-10 Score=90.12 Aligned_cols=74 Identities=23% Similarity=0.115 Sum_probs=51.5
Q ss_pred CCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCc
Q 038053 11 DGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGS 90 (231)
Q Consensus 11 ~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~ 90 (231)
+++++|++.+| .+++|+|+||||||||+++|+|...+ ..|.+........ .. .....++++.|++++..+..
T Consensus 1 l~~is~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p----~~G~i~~~g~~~~-~~-~~~~~~v~q~~~l~~~~tv~ 72 (230)
T TIGR01184 1 LKGVNLTIQQG--EFISLIGHSGCGKSTLLNLISGLAQP----TSGGVILEGKQIT-EP-GPDRMVVFQNYSLLPWLTVR 72 (230)
T ss_pred CCceeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CCceEEECCEECC-CC-ChhheEEecCcccCCCCCHH
Confidence 57899999999 99999999999999999999999873 3443333221100 00 11236788888887755544
Q ss_pred hH
Q 038053 91 EF 92 (231)
Q Consensus 91 ~~ 92 (231)
++
T Consensus 73 e~ 74 (230)
T TIGR01184 73 EN 74 (230)
T ss_pred HH
Confidence 43
No 410
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.01 E-value=2.7e-10 Score=102.64 Aligned_cols=45 Identities=27% Similarity=0.411 Sum_probs=42.0
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
++.|+++.+|++++|++.+| .+++|+|+||||||||+++|+|...
T Consensus 329 ~~~~~~~~~l~~isl~i~~G--e~~~l~G~NGsGKSTLl~~l~G~~~ 373 (552)
T TIGR03719 329 SKGFGDKLLIDDLSFKLPPG--GIVGVIGPNGAGKSTLFRMITGQEQ 373 (552)
T ss_pred EEEECCeeeeccceEEEcCC--CEEEEECCCCCCHHHHHHHHcCCCC
Confidence 45677788999999999999 9999999999999999999999976
No 411
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.01 E-value=2.3e-10 Score=94.61 Aligned_cols=69 Identities=17% Similarity=0.158 Sum_probs=49.9
Q ss_pred cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE----EeeCCcEEEEEeCCC
Q 038053 8 RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT----VLKDGQVVNVIDTPG 82 (231)
Q Consensus 8 ~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~l~Dtpg 82 (231)
+.+|++++|++.+| .+++|+|+||+|||||+++|+|... +..|.++.+...... ........++++.|.
T Consensus 23 ~~vl~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~----~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~ 95 (280)
T PRK13633 23 KLALDDVNLEVKKG--EFLVILGRNGSGKSTIAKHMNALLI----PSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPD 95 (280)
T ss_pred cceeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCC----CCCceEEECCEeccccccHHHHhhheEEEecChh
Confidence 56999999999999 9999999999999999999999987 344444433221100 001234567777764
No 412
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=99.01 E-value=2.1e-09 Score=90.92 Aligned_cols=90 Identities=17% Similarity=0.132 Sum_probs=66.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeC----------------CcEEEEEeCCCCcCCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKD----------------GQVVNVIDTPGLFDSS 87 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~l~Dtpg~~~~~ 87 (231)
..+||||.||+|||||+|+|++...... ...+.+|..+..+...... ...+.++|.||+..+.
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~-a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gA 81 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEA-ANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGA 81 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCcccc-CCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccch
Confidence 6799999999999999999999976122 2456666666665554422 1357789999999877
Q ss_pred CCchHHHHHHHHHHhhhcCCccEEEEEEECC
Q 038053 88 AGSEFVGKEIVKRIGLAKGGIHAVLVVFSVR 118 (231)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~ 118 (231)
+....++..++..+. .+|++++|++..
T Consensus 82 s~g~Glgn~fL~~ir----~~d~l~hVvr~f 108 (368)
T TIGR00092 82 SKGEGLGNQFLANIR----EVDIIQHVVRCF 108 (368)
T ss_pred hcccCcchHHHHHHH----hCCEEEEEEeCC
Confidence 666667777776654 559999999985
No 413
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.00 E-value=2.5e-10 Score=95.94 Aligned_cols=40 Identities=23% Similarity=0.218 Sum_probs=37.6
Q ss_pred cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053 8 RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF 49 (231)
Q Consensus 8 ~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~ 49 (231)
..+|+++++++++| .+++|+|+||||||||+++|+|...+
T Consensus 39 ~~~L~~vsl~i~~G--e~~~I~G~nGsGKSTLl~~L~Gl~~p 78 (320)
T PRK13631 39 LVALNNISYTFEKN--KIYFIIGNSGSGKSTLVTHFNGLIKS 78 (320)
T ss_pred ccceeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 36999999999999 99999999999999999999999873
No 414
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.00 E-value=4.1e-10 Score=91.79 Aligned_cols=78 Identities=18% Similarity=0.226 Sum_probs=52.6
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEEeeCCcEEEEEeC
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTVLKDGQVVNVIDT 80 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~Dt 80 (231)
++.| +.+++++++|++.+| .+++|+|+||||||||+++|+|...+...+..|.+....... ..........++++.
T Consensus 11 ~~~~-~~~il~~vsl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~ 87 (254)
T PRK10418 11 ALQA-AQPLVHGVSLTLQRG--RVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQN 87 (254)
T ss_pred EEEe-ccceecceEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecC
Confidence 4556 567999999999999 999999999999999999999998641101333333221110 011112346778887
Q ss_pred CC
Q 038053 81 PG 82 (231)
Q Consensus 81 pg 82 (231)
|.
T Consensus 88 ~~ 89 (254)
T PRK10418 88 PR 89 (254)
T ss_pred Cc
Confidence 75
No 415
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.00 E-value=2.1e-10 Score=93.19 Aligned_cols=82 Identities=16% Similarity=0.099 Sum_probs=56.0
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc-ccccCCCCcceeeeeeeE-----EeeCCcEE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF-KASADSSGVTKTCEMKTT-----VLKDGQVV 75 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~-~~~~~~~~~t~~~~~~~~-----~~~~~~~~ 75 (231)
++.|+++.+++++++++.+| .+++|+|+||+|||||+++|+|.... ...+..|.+......... ........
T Consensus 10 ~~~~~~~~~l~~~s~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~ 87 (250)
T PRK14266 10 NTYFDDAHILKNVNLDIPKN--SVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVG 87 (250)
T ss_pred EEEeCCeEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheE
Confidence 45677788999999999999 99999999999999999999997431 000123333322211000 00134578
Q ss_pred EEEeCCCCcC
Q 038053 76 NVIDTPGLFD 85 (231)
Q Consensus 76 ~l~Dtpg~~~ 85 (231)
++++.|.+++
T Consensus 88 ~~~q~~~~~~ 97 (250)
T PRK14266 88 MVFQKPNPFP 97 (250)
T ss_pred EEecCCccCc
Confidence 8888888776
No 416
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.00 E-value=7.6e-11 Score=97.02 Aligned_cols=76 Identities=18% Similarity=0.152 Sum_probs=53.9
Q ss_pred CCCC--CCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-e---EEeeCCcEE
Q 038053 2 SSGM--GERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-T---TVLKDGQVV 75 (231)
Q Consensus 2 ~~~~--~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~---~~~~~~~~~ 75 (231)
+++| +...+|++++|.+.+| .+++|+|+||+|||||+++|+|... . .|.+..+.... . ... .....
T Consensus 9 s~~~~~~~~~~l~~isl~I~~G--e~~~IvG~nGsGKSTLl~~L~gl~~-~----~G~I~i~g~~i~~~~~~~l-r~~i~ 80 (275)
T cd03289 9 TAKYTEGGNAVLENISFSISPG--QRVGLLGRTGSGKSTLLSAFLRLLN-T----EGDIQIDGVSWNSVPLQKW-RKAFG 80 (275)
T ss_pred EEEeCCCCCcceeceEEEEcCC--CEEEEECCCCCCHHHHHHHHhhhcC-C----CcEEEECCEEhhhCCHHHH-hhhEE
Confidence 4566 4567999999999999 9999999999999999999999975 2 22222222110 0 011 23567
Q ss_pred EEEeCCCCcC
Q 038053 76 NVIDTPGLFD 85 (231)
Q Consensus 76 ~l~Dtpg~~~ 85 (231)
++++.|.+++
T Consensus 81 ~v~q~~~lf~ 90 (275)
T cd03289 81 VIPQKVFIFS 90 (275)
T ss_pred EECCCcccch
Confidence 7788887764
No 417
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.00 E-value=1.7e-10 Score=105.54 Aligned_cols=47 Identities=21% Similarity=0.254 Sum_probs=43.6
Q ss_pred CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053 1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF 49 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~ 49 (231)
+++.|++..+|++++|.+++| .+++|+|+||||||||+++|+|...+
T Consensus 9 ls~~~~~~~il~~is~~i~~G--e~v~LvG~NGsGKSTLLriiaG~~~p 55 (635)
T PRK11147 9 AWLSFSDAPLLDNAELHIEDN--ERVCLVGRNGAGKSTLMKILNGEVLL 55 (635)
T ss_pred EEEEeCCceeEeCcEEEECCC--CEEEEECCCCCCHHHHHHHHcCCCCC
Confidence 367888889999999999999 99999999999999999999999774
No 418
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.00 E-value=8.5e-09 Score=79.82 Aligned_cols=136 Identities=13% Similarity=0.093 Sum_probs=78.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeee--eeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHH
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEM--KTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKR 100 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~ 100 (231)
+|+++|.+|+|||||++.+++..-. .....|..... ..... .+ ..+.+.||+|... +...
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f~----~~~~~T~g~~~~~~~i~~-~~~~~~l~iwDt~G~~~-----------~~~~ 65 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEFD----EDYIQTLGVNFMEKTISI-RGTEITFSIWDLGGQRE-----------FINM 65 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC----CCCCCccceEEEEEEEEE-CCEEEEEEEEeCCCchh-----------HHHh
Confidence 6899999999999999998876431 11112221111 12222 33 4577899998643 1112
Q ss_pred HhhhcCCccEEEEEEECCCCCCHHHHH--------h-cCCCCcHHHHHHHHHhh--------------HHHHHhhcc-ch
Q 038053 101 IGLAKGGIHAVLVVFSVRSRFSQEEEA--------A-NGGQPYTDEFLAELKRG--------------ATELRDQQA-EV 156 (231)
Q Consensus 101 ~~~~~~~~~~il~vvd~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~--------------~~~l~~~~~-~i 156 (231)
....+..+|++++|+|+++.-+..+.. . ....|+ .+.++.|.. ...+....+ ++
T Consensus 66 ~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~pi--lVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~ 143 (182)
T cd04128 66 LPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIPI--LVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPL 143 (182)
T ss_pred hHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEE--EEEEchhccccccchhhhhhHHHHHHHHHHcCCEE
Confidence 223457889999999998553433311 1 111222 223443310 012222222 56
Q ss_pred hhhhhhhHhhHHHHHHHHHHHH
Q 038053 157 DSLKEYSKQEISKLMGQMQESY 178 (231)
Q Consensus 157 ~~is~~~~~~i~~l~~~i~~~~ 178 (231)
+.+||++|.|+++++..+....
T Consensus 144 ~e~SAk~g~~v~~lf~~l~~~l 165 (182)
T cd04128 144 IFCSTSHSINVQKIFKIVLAKA 165 (182)
T ss_pred EEEeCCCCCCHHHHHHHHHHHH
Confidence 7799999999999998876643
No 419
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.00 E-value=4.1e-09 Score=81.01 Aligned_cols=136 Identities=18% Similarity=0.138 Sum_probs=77.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKR 100 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~ 100 (231)
.+|+++|.+|+|||||++.+....- +.....|...... .... .+ ..+.+.||+|..... .+
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f----~~~~~pt~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~--------~~--- 65 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKF----PSEYVPTVFDNYAVTVMI-GGEPYTLGLFDTAGQEDYD--------RL--- 65 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC----CCCCCCceeeeeEEEEEE-CCEEEEEEEEECCCccchh--------hh---
Confidence 5799999999999999999987543 1112222221111 1222 33 456689999975421 11
Q ss_pred HhhhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhhH---------------------HHHH
Q 038053 101 IGLAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRGA---------------------TELR 150 (231)
Q Consensus 101 ~~~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~---------------------~~l~ 150 (231)
....+..+|++++|+|.++.-+-.... .....|++ .+.++.|... ..+.
T Consensus 66 ~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~pii-lvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a 144 (175)
T cd01874 66 RPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFL-LVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLA 144 (175)
T ss_pred hhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE-EEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHH
Confidence 122446789999999998543332211 11223333 2333332100 1122
Q ss_pred hhcc--chhhhhhhhHhhHHHHHHHHHH
Q 038053 151 DQQA--EVDSLKEYSKQEISKLMGQMQE 176 (231)
Q Consensus 151 ~~~~--~i~~is~~~~~~i~~l~~~i~~ 176 (231)
...+ .++.+||++|.|+.+++..+..
T Consensus 145 ~~~~~~~~~e~SA~tg~~v~~~f~~~~~ 172 (175)
T cd01874 145 RDLKAVKYVECSALTQKGLKNVFDEAIL 172 (175)
T ss_pred HHhCCcEEEEecCCCCCCHHHHHHHHHH
Confidence 2222 5677999999999998877654
No 420
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.00 E-value=5.2e-10 Score=91.61 Aligned_cols=41 Identities=24% Similarity=0.228 Sum_probs=38.5
Q ss_pred CCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 6 GERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 6 ~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
+..+++++++|++.+| .+++|+|+||+|||||+++|+|...
T Consensus 35 ~~~~il~~is~~i~~G--e~~~liG~NGsGKSTLlk~L~Gl~~ 75 (264)
T PRK13546 35 KTFFALDDISLKAYEG--DVIGLVGINGSGKSTLSNIIGGSLS 75 (264)
T ss_pred CceEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCcC
Confidence 4567899999999999 9999999999999999999999987
No 421
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.00 E-value=1.9e-10 Score=94.90 Aligned_cols=46 Identities=15% Similarity=0.142 Sum_probs=41.5
Q ss_pred CCCCC-CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053 2 SSGMG-ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF 49 (231)
Q Consensus 2 ~~~~~-~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~ 49 (231)
++.|+ ...++++++|++.+| .+++|+|+||+|||||+++|+|...+
T Consensus 10 ~~~~~~~~~~l~~vsl~i~~G--e~~~i~G~NGsGKSTLl~~l~Gl~~p 56 (277)
T PRK13652 10 CYSYSGSKEALNNINFIAPRN--SRIAVIGPNGAGKSTLFRHFNGILKP 56 (277)
T ss_pred EEEeCCCCceeeEeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 56774 567999999999999 99999999999999999999999873
No 422
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.00 E-value=2.6e-10 Score=91.44 Aligned_cols=46 Identities=22% Similarity=0.219 Sum_probs=41.4
Q ss_pred CCCCCC-cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053 2 SSGMGE-RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF 49 (231)
Q Consensus 2 ~~~~~~-~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~ 49 (231)
++.|++ +.++++++|++++| .+++|+|+||+|||||+++|+|...+
T Consensus 9 ~~~~~~~~~~l~~isl~i~~G--~~~~i~G~nGsGKSTLl~~l~G~~~~ 55 (229)
T cd03254 9 NFSYDEKKPVLKDINFSIKPG--ETVAIVGPTGAGKTTLINLLMRFYDP 55 (229)
T ss_pred EEecCCCCccccceEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCcCC
Confidence 456764 57999999999999 99999999999999999999999873
No 423
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.00 E-value=2.2e-10 Score=93.54 Aligned_cols=78 Identities=15% Similarity=0.143 Sum_probs=53.8
Q ss_pred CCCCCC--cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE---EeeCCcEEE
Q 038053 2 SSGMGE--RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT---VLKDGQVVN 76 (231)
Q Consensus 2 ~~~~~~--~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~ 76 (231)
+++|+. ..++++++|++.+| .+++|+|+||+|||||+++|+|...+ ..|.+......... ........+
T Consensus 26 ~~~~~~~~~~il~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~----~~G~i~i~g~~i~~~~~~~~~~~i~~ 99 (257)
T cd03288 26 CVRYENNLKPVLKHVKAYIKPG--QKVGICGRTGSGKSSLSLAFFRMVDI----FDGKIVIDGIDISKLPLHTLRSRLSI 99 (257)
T ss_pred EEEeCCCCCcceeEEEEEEcCC--CEEEEECCCCCCHHHHHHHHHcccCC----CCCeEEECCEEhhhCCHHHHhhhEEE
Confidence 445654 57999999999999 99999999999999999999999763 34433332211000 001234567
Q ss_pred EEeCCCCcC
Q 038053 77 VIDTPGLFD 85 (231)
Q Consensus 77 l~Dtpg~~~ 85 (231)
+++.|.+++
T Consensus 100 v~q~~~l~~ 108 (257)
T cd03288 100 ILQDPILFS 108 (257)
T ss_pred ECCCCcccc
Confidence 777776654
No 424
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=98.99 E-value=1.7e-10 Score=93.90 Aligned_cols=82 Identities=20% Similarity=0.106 Sum_probs=55.5
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcccc-ccCCCCcceeeeeeeE-----EeeCCcEE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKA-SADSSGVTKTCEMKTT-----VLKDGQVV 75 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~-~~~~~~~t~~~~~~~~-----~~~~~~~~ 75 (231)
++.|++..++++++|++.+| .+++|+|+||||||||+++|+|...... .+..|.+......... ........
T Consensus 13 ~~~~~~~~il~~is~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~ 90 (253)
T PRK14242 13 SFFYGDFQALHDISLEFEQN--QVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVG 90 (253)
T ss_pred EEEECCeeeecceeEEEeCC--CEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEE
Confidence 56777778999999999999 9999999999999999999999753100 0123333322211000 00024567
Q ss_pred EEEeCCCCcC
Q 038053 76 NVIDTPGLFD 85 (231)
Q Consensus 76 ~l~Dtpg~~~ 85 (231)
++++.|.+++
T Consensus 91 ~v~q~~~~~~ 100 (253)
T PRK14242 91 MVFQKPNPFP 100 (253)
T ss_pred EEecCCCCCc
Confidence 7888887776
No 425
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.99 E-value=5e-11 Score=88.96 Aligned_cols=74 Identities=20% Similarity=0.180 Sum_probs=54.1
Q ss_pred CCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee---EEeeCCcEEEEEeCCC
Q 038053 6 GERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT---TVLKDGQVVNVIDTPG 82 (231)
Q Consensus 6 ~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~l~Dtpg 82 (231)
++..+++++||.+.+| ..|+|.||+|||||||++.++..+.+ +.|..+....... .+.++....|+.++|.
T Consensus 14 ~~a~il~~isl~v~~G--e~iaitGPSG~GKStllk~va~Lisp----~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~pa 87 (223)
T COG4619 14 GDAKILNNISLSVRAG--EFIAITGPSGCGKSTLLKIVASLISP----TSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPA 87 (223)
T ss_pred CCCeeecceeeeecCC--ceEEEeCCCCccHHHHHHHHHhccCC----CCceEEEcCccccccChHHHHHHHHHHHcCcc
Confidence 5788999999999999 99999999999999999999999884 4443333222111 1111345566777887
Q ss_pred CcC
Q 038053 83 LFD 85 (231)
Q Consensus 83 ~~~ 85 (231)
+++
T Consensus 88 Lfg 90 (223)
T COG4619 88 LFG 90 (223)
T ss_pred ccc
Confidence 765
No 426
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.99 E-value=6.4e-10 Score=91.85 Aligned_cols=63 Identities=14% Similarity=0.189 Sum_probs=48.5
Q ss_pred CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcC
Q 038053 7 ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 85 (231)
Q Consensus 7 ~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~ 85 (231)
.++++++++|++.+| .+++|+|+||+|||||+++|+|... +..|.++. .+...++.+.|.+++
T Consensus 49 ~~~vL~~vs~~i~~G--e~~~liG~NGsGKSTLl~~I~Gl~~----p~~G~I~i----------~g~i~yv~q~~~l~~ 111 (282)
T cd03291 49 GAPVLKNINLKIEKG--EMLAITGSTGSGKTSLLMLILGELE----PSEGKIKH----------SGRISFSSQFSWIMP 111 (282)
T ss_pred cccceeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEEE----------CCEEEEEeCcccccc
Confidence 467999999999999 9999999999999999999999976 33443332 334555666665544
No 427
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.99 E-value=3.6e-10 Score=90.52 Aligned_cols=74 Identities=19% Similarity=0.097 Sum_probs=53.7
Q ss_pred CCCCC-cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee----EEeeCCcEEEE
Q 038053 3 SGMGE-RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT----TVLKDGQVVNV 77 (231)
Q Consensus 3 ~~~~~-~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~l 77 (231)
..|.+ ..+++++++.+++| ..++|+|+||||||||++.|.|...+. .|.+..+..... ........+++
T Consensus 11 ~~y~~~~~~l~~v~~~i~~G--e~~~i~G~nGsGKSTL~~~l~GLl~p~----~G~v~~~g~~~~~~~~~~~~~~~vG~V 84 (235)
T COG1122 11 FRYPGRKAALKDVSLEIEKG--ERVLLIGPNGSGKSTLLKLLNGLLKPT----SGEVLVDGLDTSSEKSLLELRQKVGLV 84 (235)
T ss_pred EEcCCCceeeeeeEEEECCC--CEEEEECCCCCCHHHHHHHHcCcCcCC----CCEEEECCeeccchhhHHHhhcceEEE
Confidence 45554 48999999999999 999999999999999999999999843 333322211100 11115678888
Q ss_pred EeCCC
Q 038053 78 IDTPG 82 (231)
Q Consensus 78 ~Dtpg 82 (231)
++.|.
T Consensus 85 fQnpd 89 (235)
T COG1122 85 FQNPD 89 (235)
T ss_pred EECcc
Confidence 88885
No 428
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.99 E-value=3.6e-09 Score=82.14 Aligned_cols=137 Identities=14% Similarity=0.117 Sum_probs=75.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeee-eeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCE-MKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKR 100 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~ 100 (231)
.+|+++|++|+|||||++.++..... .....|.... ...... .+ ..+.+.||||...... +.
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~----~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~--------~~-- 66 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFP----EEYHPTVFENYVTDCRV-DGKPVQLALWDTAGQEEYER--------LR-- 66 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC----cccCCcccceEEEEEEE-CCEEEEEEEEECCCChhccc--------cc--
Confidence 58999999999999999999844321 1111122111 111222 22 3466889999653211 00
Q ss_pred HhhhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhh-------------------HHHHHhh
Q 038053 101 IGLAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRG-------------------ATELRDQ 152 (231)
Q Consensus 101 ~~~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~-------------------~~~l~~~ 152 (231)
...+..+|+++++++.++.-+..+.. .....|++ .+.++.|.. ...+...
T Consensus 67 -~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~pii-lvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (187)
T cd04129 67 -PLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVI-LVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKE 144 (187)
T ss_pred -hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE-EEeeChhhhhCcccccccccCCcCCHHHHHHHHHH
Confidence 11236779999999987432222111 11223333 233433310 0122222
Q ss_pred cc--chhhhhhhhHhhHHHHHHHHHHH
Q 038053 153 QA--EVDSLKEYSKQEISKLMGQMQES 177 (231)
Q Consensus 153 ~~--~i~~is~~~~~~i~~l~~~i~~~ 177 (231)
.+ +.+.+|+++|.|+++++..+.+.
T Consensus 145 ~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 171 (187)
T cd04129 145 IGAKKYMECSALTGEGVDDVFEAATRA 171 (187)
T ss_pred hCCcEEEEccCCCCCCHHHHHHHHHHH
Confidence 22 56778999999999998887754
No 429
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.98 E-value=2.6e-10 Score=101.40 Aligned_cols=47 Identities=17% Similarity=0.176 Sum_probs=43.3
Q ss_pred CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053 1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF 49 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~ 49 (231)
+++.|++..++++++|++.+| .+++|+|+||||||||+++|+|...+
T Consensus 9 l~~~~~~~~il~~vsl~i~~G--e~~~liG~nGsGKSTLl~~l~G~~~p 55 (490)
T PRK10938 9 GTFRLSDTKTLQLPSLTLNAG--DSWAFVGANGSGKSALARALAGELPL 55 (490)
T ss_pred EEEEcCCeeecccceEEEcCC--CEEEEECCCCCCHHHHHHHHhccCCC
Confidence 367788888999999999999 99999999999999999999999874
No 430
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=98.98 E-value=1.2e-08 Score=79.48 Aligned_cols=139 Identities=15% Similarity=0.194 Sum_probs=79.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
.+|+++|..|+|||||++.+.+.... . ...+..+.+........ .+ ..+.+.||+|... +....
T Consensus 7 ~KivviG~~~vGKTsll~~~~~~~~~-~-~~~~t~~~~~~~~~i~~-~~~~~~l~iwDt~G~~~-----------~~~l~ 72 (189)
T cd04121 7 LKFLLVGDSDVGKGEILASLQDGSTE-S-PYGYNMGIDYKTTTILL-DGRRVKLQLWDTSGQGR-----------FCTIF 72 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-C-CCCCcceeEEEEEEEEE-CCEEEEEEEEeCCCcHH-----------HHHHH
Confidence 68999999999999999999875321 1 11122222221122222 33 4567899999643 11122
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH--------hcCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhhhh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------ANGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKEYS 163 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~~~ 163 (231)
...+..+|++++|+|.++..+-.... .....|++ .+.++.|.. ...+....+ +.+.+||++
T Consensus 73 ~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~pii-lVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~ 151 (189)
T cd04121 73 RSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKI-LVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLC 151 (189)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEE-EEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCC
Confidence 23447889999999998544433322 11122322 222332210 012222222 577889999
Q ss_pred HhhHHHHHHHHHHH
Q 038053 164 KQEISKLMGQMQES 177 (231)
Q Consensus 164 ~~~i~~l~~~i~~~ 177 (231)
|.|+++++..+...
T Consensus 152 g~~V~~~F~~l~~~ 165 (189)
T cd04121 152 NFNITESFTELARI 165 (189)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999988887654
No 431
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.98 E-value=3.1e-10 Score=88.40 Aligned_cols=56 Identities=29% Similarity=0.344 Sum_probs=40.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccc-------cccCCCCcceeeeeeeEEeeCCcEEEEEeCCCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFK-------ASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 83 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~-------~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~ 83 (231)
..++++|.+|+|||||+|+|++..... .....+++|+....... +..++++||||+
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~----~~~~~~~DtPG~ 190 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPL----GNGKKLYDTPGI 190 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEec----CCCCEEEeCcCC
Confidence 689999999999999999999865321 11245566766544332 225789999996
No 432
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.98 E-value=2e-09 Score=93.20 Aligned_cols=93 Identities=17% Similarity=0.213 Sum_probs=61.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCc------ccc--------ccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCC
Q 038053 23 KRTVVLLGRTGNGKSATGNSILGRKA------FKA--------SADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSA 88 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g~~~------~~~--------~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~ 88 (231)
..+|+++|+.++|||||++.|++... ... .....+.|.+........ .+..+.++||||..+
T Consensus 12 ~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~-~~~~~~liDtpGh~~--- 87 (394)
T TIGR00485 12 HVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYET-ENRHYAHVDCPGHAD--- 87 (394)
T ss_pred eEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcC-CCEEEEEEECCchHH---
Confidence 37899999999999999999985411 100 001256666554433333 566788999999643
Q ss_pred CchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH
Q 038053 89 GSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA 127 (231)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~ 127 (231)
+...+......+|.+++|+|+..++......
T Consensus 88 --------f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e 118 (394)
T TIGR00485 88 --------YVKNMITGAAQMDGAILVVSATDGPMPQTRE 118 (394)
T ss_pred --------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHH
Confidence 2222333346789999999998666665543
No 433
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.98 E-value=3.3e-10 Score=93.48 Aligned_cols=84 Identities=18% Similarity=0.090 Sum_probs=55.9
Q ss_pred CCCCCC---cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee---EEeeCCcEE
Q 038053 2 SSGMGE---RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT---TVLKDGQVV 75 (231)
Q Consensus 2 ~~~~~~---~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~ 75 (231)
++.|++ ..++++++|++.+| .+++|+|+||+|||||+++|+|...+ ..|.++....... ........+
T Consensus 11 ~~~~~~~~~~~~l~~v~l~i~~G--e~~~I~G~nGsGKSTLl~~l~Gl~~~----~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (277)
T PRK13642 11 VFKYEKESDVNQLNGVSFSITKG--EWVSIIGQNGSGKSTTARLIDGLFEE----FEGKVKIDGELLTAENVWNLRRKIG 84 (277)
T ss_pred EEEcCCCCcCeeeeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCC----CCCEEEECCEECCcCCHHHHhcceE
Confidence 456653 35899999999999 99999999999999999999999873 4443433221110 000123467
Q ss_pred EEEeCCC-CcCCCCCch
Q 038053 76 NVIDTPG-LFDSSAGSE 91 (231)
Q Consensus 76 ~l~Dtpg-~~~~~~~~~ 91 (231)
++++.|. ++...+..+
T Consensus 85 ~v~q~~~~~~~~~tv~e 101 (277)
T PRK13642 85 MVFQNPDNQFVGATVED 101 (277)
T ss_pred EEEECHHHhhccCCHHH
Confidence 7788774 343333333
No 434
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=98.98 E-value=6e-09 Score=79.41 Aligned_cols=79 Identities=18% Similarity=0.130 Sum_probs=51.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhh
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLA 104 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~ 104 (231)
.|+++|.+|||||||+|.+++.......+ |.......... .+..+.++|+||... +.......
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~-----t~g~~~~~~~~-~~~~~~i~D~~G~~~-----------~~~~~~~~ 63 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAP-----TVGFTPTKLRL-DKYEVCIFDLGGGAN-----------FRGIWVNY 63 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccC-----cccceEEEEEE-CCEEEEEEECCCcHH-----------HHHHHHHH
Confidence 48999999999999999999873211111 21111222333 567788999999532 11112234
Q ss_pred cCCccEEEEEEECCCC
Q 038053 105 KGGIHAVLVVFSVRSR 120 (231)
Q Consensus 105 ~~~~~~il~vvd~~~~ 120 (231)
+..+|++++|+|.++.
T Consensus 64 ~~~a~~ii~V~D~s~~ 79 (167)
T cd04161 64 YAEAHGLVFVVDSSDD 79 (167)
T ss_pred HcCCCEEEEEEECCch
Confidence 4788999999999854
No 435
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=98.98 E-value=3.4e-10 Score=91.31 Aligned_cols=46 Identities=24% Similarity=0.117 Sum_probs=40.7
Q ss_pred CCCCCC---cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053 2 SSGMGE---RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF 49 (231)
Q Consensus 2 ~~~~~~---~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~ 49 (231)
++.|++ .+++++++|++++| ..++|+|+||||||||+++|+|...+
T Consensus 7 ~~~~~~~~~~~~l~~i~~~i~~G--e~~~l~G~nGsGKSTLl~~i~G~~~~ 55 (238)
T cd03249 7 SFRYPSRPDVPILKGLSLTIPPG--KTVALVGSSGCGKSTVVSLLERFYDP 55 (238)
T ss_pred EEecCCCCCccceeceEEEecCC--CEEEEEeCCCCCHHHHHHHHhccCCC
Confidence 455653 46999999999999 99999999999999999999999873
No 436
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.98 E-value=2.7e-10 Score=94.56 Aligned_cols=46 Identities=22% Similarity=0.164 Sum_probs=40.9
Q ss_pred CCCCCCc-----ccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053 2 SSGMGER-----VIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF 49 (231)
Q Consensus 2 ~~~~~~~-----~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~ 49 (231)
++.|+++ .++++++|++.+| .+++|+|+||||||||+++|+|...+
T Consensus 13 ~~~~~~~~~~~~~il~~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p 63 (289)
T PRK13645 13 SYTYAKKTPFEFKALNNTSLTFKKN--KVTCVIGTTGSGKSTMIQLTNGLIIS 63 (289)
T ss_pred EEEeCCCCccccceeeeeEEEEeCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4566653 4999999999999 99999999999999999999999873
No 437
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.98 E-value=3.9e-09 Score=80.83 Aligned_cols=135 Identities=17% Similarity=0.113 Sum_probs=75.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRIG 102 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~ 102 (231)
+++++|++|+|||||++.+++..-. . ...++..+........ .+ ..+.++||||..... ....
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~~~-~--~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~-----------~~~~ 66 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGYP-T--EYVPTAFDNFSVVVLV-DGKPVRLQLCDTAGQDEFD-----------KLRP 66 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC-C--CCCCceeeeeeEEEEE-CCEEEEEEEEECCCChhhc-----------cccc
Confidence 6899999999999999999875431 1 1111211111111222 22 456789999974311 1112
Q ss_pred hhcCCccEEEEEEECCCCCCHHHH--H-------hcCCCCcHHHHHHHHHhh---------------------HHHHHhh
Q 038053 103 LAKGGIHAVLVVFSVRSRFSQEEE--A-------ANGGQPYTDEFLAELKRG---------------------ATELRDQ 152 (231)
Q Consensus 103 ~~~~~~~~il~vvd~~~~~~~~~~--~-------~~~~~~~~~~~~~~~~~~---------------------~~~l~~~ 152 (231)
..+..+|++++++|.+++-+.... . .....|++ .+.++.|.. ...+...
T Consensus 67 ~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~ 145 (173)
T cd04130 67 LCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPII-LVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEK 145 (173)
T ss_pred cccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEE-EEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHH
Confidence 244688999999999854332221 1 11123332 333443310 0112111
Q ss_pred c--cchhhhhhhhHhhHHHHHHHHH
Q 038053 153 Q--AEVDSLKEYSKQEISKLMGQMQ 175 (231)
Q Consensus 153 ~--~~i~~is~~~~~~i~~l~~~i~ 175 (231)
. .+++.+|+++|.|+++++..+.
T Consensus 146 ~~~~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 146 IGACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred hCCCeEEEEeCCCCCCHHHHHHHHH
Confidence 1 2577899999999999987653
No 438
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.98 E-value=2.6e-09 Score=96.43 Aligned_cols=91 Identities=18% Similarity=0.322 Sum_probs=61.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccc--------------cCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKAS--------------ADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAG 89 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~--------------~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~ 89 (231)
.+|+|+|..++|||||++.|+........ ....++|.........+ .+..+.++||||..+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~-~~~kinlIDTPGh~D---- 76 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRY-NGTKINIVDTPGHAD---- 76 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEE-CCEEEEEEECCCHHH----
Confidence 47999999999999999999853211000 01235566555555666 788999999999754
Q ss_pred chHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHH
Q 038053 90 SEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEE 126 (231)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~ 126 (231)
+.......+..+|.+++|+|+..+......
T Consensus 77 -------F~~ev~~~l~~aD~alLVVDa~~G~~~qT~ 106 (594)
T TIGR01394 77 -------FGGEVERVLGMVDGVLLLVDASEGPMPQTR 106 (594)
T ss_pred -------HHHHHHHHHHhCCEEEEEEeCCCCCcHHHH
Confidence 112223344677999999999866655443
No 439
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=98.97 E-value=5.9e-10 Score=94.14 Aligned_cols=80 Identities=15% Similarity=0.104 Sum_probs=56.0
Q ss_pred cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-E-----EeeCCcEEEEEeCC
Q 038053 8 RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-T-----VLKDGQVVNVIDTP 81 (231)
Q Consensus 8 ~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-~-----~~~~~~~~~l~Dtp 81 (231)
..++++++|++.+| .+++|+|+||||||||+++|+|...+ ..|.+..+..... . ........++++.|
T Consensus 34 ~~~l~~vsl~i~~G--e~~~lvG~sGsGKSTLlk~i~Gl~~p----~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~ 107 (331)
T PRK15079 34 LKAVDGVTLRLYEG--ETLGVVGESGCGKSTFARAIIGLVKA----TDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDP 107 (331)
T ss_pred eEEEeeEEEEEcCC--CEEEEECCCCCCHHHHHHHHHCCCCC----CCcEEEECCEECCcCCHHHHHHHhCceEEEecCc
Confidence 56899999999999 99999999999999999999999873 3443333221110 0 00134578888888
Q ss_pred --CCcCCCCCchHH
Q 038053 82 --GLFDSSAGSEFV 93 (231)
Q Consensus 82 --g~~~~~~~~~~~ 93 (231)
.+++..+..+.+
T Consensus 108 ~~~l~p~~tv~~~i 121 (331)
T PRK15079 108 LASLNPRMTIGEII 121 (331)
T ss_pred hhhcCCCCCHHHHH
Confidence 466655544443
No 440
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.97 E-value=5.2e-09 Score=79.36 Aligned_cols=138 Identities=15% Similarity=0.213 Sum_probs=74.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCc--EEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAGSEFVGKEIVKRIG 102 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~ 102 (231)
+|+++|.+|+|||||++.+++.... ....+++.......... .+. .+.++||||...... . ...
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~---~~~~~t~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~--~----~~~---- 66 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFI---GEYDPNLESLYSRQVTI-DGEQVSLEILDTAGQQQADT--E----QLE---- 66 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccc---cccCCChHHhceEEEEE-CCEEEEEEEEECCCCccccc--c----hHH----
Confidence 4899999999999999998764321 11111111111111222 332 467899999763110 0 111
Q ss_pred hhcCCccEEEEEEECCCCCCHHHHH--------h---cCCCCcHHHHHHHHHhhH---------HHHHhhcc-chhhhhh
Q 038053 103 LAKGGIHAVLVVFSVRSRFSQEEEA--------A---NGGQPYTDEFLAELKRGA---------TELRDQQA-EVDSLKE 161 (231)
Q Consensus 103 ~~~~~~~~il~vvd~~~~~~~~~~~--------~---~~~~~~~~~~~~~~~~~~---------~~l~~~~~-~i~~is~ 161 (231)
..+..+|++++++|+++.-+..... . ....|++ .+.++.|... ..+....+ +++.+|+
T Consensus 67 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa 145 (165)
T cd04146 67 RSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVI-LVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSA 145 (165)
T ss_pred HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCC
Confidence 1235679999999998543322111 1 2234443 3334433110 12222222 5677899
Q ss_pred hhH-hhHHHHHHHHHHH
Q 038053 162 YSK-QEISKLMGQMQES 177 (231)
Q Consensus 162 ~~~-~~i~~l~~~i~~~ 177 (231)
.++ .|+++++..+...
T Consensus 146 ~~~~~~v~~~f~~l~~~ 162 (165)
T cd04146 146 AEDYDGVHSVFHELCRE 162 (165)
T ss_pred CCCchhHHHHHHHHHHH
Confidence 988 5899988887653
No 441
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.97 E-value=1.4e-09 Score=82.10 Aligned_cols=45 Identities=29% Similarity=0.292 Sum_probs=41.1
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
++.|.+..+++++++++++| ..++|+|+||+|||||+++|+|...
T Consensus 6 ~~~~~~~~~l~~~~~~i~~g--~~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 6 SFRYGGRTALDNVSLTLKAG--EIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred EEEeCCeeeEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34566678999999999999 9999999999999999999999976
No 442
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.97 E-value=3e-10 Score=93.91 Aligned_cols=46 Identities=22% Similarity=0.115 Sum_probs=40.7
Q ss_pred CCCCCC-----cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053 2 SSGMGE-----RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF 49 (231)
Q Consensus 2 ~~~~~~-----~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~ 49 (231)
++.|++ .+++++++|++++| .+++|+|+||||||||+++|+|...+
T Consensus 9 ~~~~~~~~~~~~~~l~~is~~i~~G--e~~~l~G~nGsGKSTLl~~i~Gl~~p 59 (280)
T PRK13649 9 SYTYQAGTPFEGRALFDVNLTIEDG--SYTAFIGHTGSGKSTIMQLLNGLHVP 59 (280)
T ss_pred EEEcCCCCccccceeeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 456653 46999999999999 99999999999999999999999773
No 443
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=98.97 E-value=3.9e-10 Score=95.27 Aligned_cols=45 Identities=22% Similarity=0.213 Sum_probs=40.3
Q ss_pred CCCC----CCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 2 SSGM----GERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 2 ~~~~----~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
++.| +...++++++|++.+| .+++|+|+||||||||+++|+|...
T Consensus 10 ~~~y~~~~~~~~~l~~vsl~i~~G--e~~~ivG~sGsGKSTLl~~i~Gl~~ 58 (330)
T PRK15093 10 TIEFKTSDGWVKAVDRVSMTLTEG--EIRGLVGESGSGKSLIAKAICGVTK 58 (330)
T ss_pred EEEEeCCCCCEEEEeeeEEEECCC--CEEEEECCCCCCHHHHHHHHHccCC
Confidence 4556 4467999999999999 9999999999999999999999975
No 444
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=98.97 E-value=7.7e-10 Score=93.27 Aligned_cols=45 Identities=22% Similarity=0.298 Sum_probs=40.2
Q ss_pred CCCCCC----cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 2 SSGMGE----RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 2 ~~~~~~----~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
++.|+. ..++++++|++.+| .+++|+|+||||||||+++|+|...
T Consensus 10 ~~~~~~~~~~~~~l~~vsl~i~~G--e~~~lvG~sGsGKSTL~~~l~Gll~ 58 (326)
T PRK11022 10 SVHFGDESAPFRAVDRISYSVKQG--EVVGIVGESGSGKSVSSLAIMGLID 58 (326)
T ss_pred EEEECCCCccEEEEeeeEEEECCC--CEEEEECCCCChHHHHHHHHHcCCC
Confidence 455654 46999999999999 9999999999999999999999875
No 445
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=98.96 E-value=3.3e-10 Score=91.94 Aligned_cols=44 Identities=18% Similarity=0.355 Sum_probs=41.1
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRK 47 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~ 47 (231)
+++|+++++++++++++.+| .+++|+|+||+|||||+++|+|..
T Consensus 8 ~~~~~~~~~l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~ 51 (248)
T PRK09580 8 HVSVEDKAILRGLNLEVRPG--EVHAIMGPNGSGKSTLSATLAGRE 51 (248)
T ss_pred EEEeCCeeeeecceeEEcCC--CEEEEECCCCCCHHHHHHHHcCCc
Confidence 56788888999999999999 999999999999999999999984
No 446
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.96 E-value=2.7e-09 Score=81.19 Aligned_cols=24 Identities=38% Similarity=0.621 Sum_probs=21.5
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCcc
Q 038053 26 VVLLGRTGNGKSATGNSILGRKAF 49 (231)
Q Consensus 26 i~lvG~~g~GKSTLin~l~g~~~~ 49 (231)
|+++|..++|||||||+|+|....
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~il 24 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPIL 24 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-S
T ss_pred CEEEcCCCCCHHHHHHHHHhcccC
Confidence 789999999999999999998743
No 447
>PRK10218 GTP-binding protein; Provisional
Probab=98.96 E-value=3.2e-09 Score=95.89 Aligned_cols=129 Identities=16% Similarity=0.182 Sum_probs=79.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccc--------------cCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKAS--------------ADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAG 89 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~--------------~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~ 89 (231)
.+|+++|..|+|||||++.|+........ ....+.|.........+ .+..+.++||||..+..
T Consensus 6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~-~~~~inliDTPG~~df~-- 82 (607)
T PRK10218 6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKW-NDYRINIVDTPGHADFG-- 82 (607)
T ss_pred eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEec-CCEEEEEEECCCcchhH--
Confidence 68999999999999999999964221100 01234555544445555 77889999999976521
Q ss_pred chHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhhH-------HHHHhhc----
Q 038053 90 SEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRGA-------TELRDQQ---- 153 (231)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-------~~l~~~~---- 153 (231)
.. ....+..+|++++|+|+.++....... ...+.|.+ .++|++|... +++.+.+
T Consensus 83 -----~~----v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~I-VviNKiD~~~a~~~~vl~ei~~l~~~l~ 152 (607)
T PRK10218 83 -----GE----VERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPI-VVINKVDRPGARPDWVVDQVFDLFVNLD 152 (607)
T ss_pred -----HH----HHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEE-EEEECcCCCCCchhHHHHHHHHHHhccC
Confidence 11 223446789999999998766554433 22334443 3445544211 1222221
Q ss_pred -------cchhhhhhhhHh
Q 038053 154 -------AEVDSLKEYSKQ 165 (231)
Q Consensus 154 -------~~i~~is~~~~~ 165 (231)
-|+++.|+++|.
T Consensus 153 ~~~~~~~~PVi~~SA~~G~ 171 (607)
T PRK10218 153 ATDEQLDFPIVYASALNGI 171 (607)
T ss_pred ccccccCCCEEEeEhhcCc
Confidence 157788998886
No 448
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.96 E-value=2.1e-09 Score=79.72 Aligned_cols=57 Identities=30% Similarity=0.433 Sum_probs=41.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 85 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~ 85 (231)
.+++++|.+|+|||||+|.|++...... ...++.|....... . +..++++||||+..
T Consensus 84 ~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~~~~~~~~~--~--~~~~~i~DtpG~~~ 140 (141)
T cd01857 84 ATIGLVGYPNVGKSSLINALVGKKKVSV-SATPGKTKHFQTIF--L--TPTITLCDCPGLVF 140 (141)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceee-CCCCCcccceEEEE--e--CCCEEEEECCCcCC
Confidence 3899999999999999999999876543 34555665443322 2 23578999999863
No 449
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.96 E-value=3.5e-10 Score=103.40 Aligned_cols=47 Identities=34% Similarity=0.444 Sum_probs=43.4
Q ss_pred CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053 1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF 49 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~ 49 (231)
+++.|+++.+|++++|++.+| .+++|+|+||||||||+++|+|...+
T Consensus 318 l~~~y~~~~il~~isl~i~~G--e~~~l~G~NGsGKSTLlk~l~G~~~p 364 (638)
T PRK10636 318 VSAGYGDRIILDSIKLNLVPG--SRIGLLGRNGAGKSTLIKLLAGELAP 364 (638)
T ss_pred eEEEeCCeeeeccceEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 356788889999999999999 99999999999999999999999873
No 450
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.96 E-value=3.3e-10 Score=93.76 Aligned_cols=75 Identities=15% Similarity=0.085 Sum_probs=54.5
Q ss_pred CCCCC-CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee---E--EeeCCcEE
Q 038053 2 SSGMG-ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT---T--VLKDGQVV 75 (231)
Q Consensus 2 ~~~~~-~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~---~--~~~~~~~~ 75 (231)
++.|+ ++.++++++|++.+| ..++|+|+||+|||||+++|+|... +..|.++....... . ........
T Consensus 12 ~~~~~~~~~~l~~vs~~i~~G--e~~~i~G~nGaGKSTLl~~i~Gl~~----p~~G~i~i~g~~~~~~~~~~~~~~~~ig 85 (283)
T PRK13636 12 NYNYSDGTHALKGININIKKG--EVTAILGGNGAGKSTLFQNLNGILK----PSSGRILFDGKPIDYSRKGLMKLRESVG 85 (283)
T ss_pred EEEeCCCCeeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCC----CCccEEEECCEECCCCcchHHHHHhhEE
Confidence 56775 577999999999999 9999999999999999999999987 34444443332110 0 00124567
Q ss_pred EEEeCCC
Q 038053 76 NVIDTPG 82 (231)
Q Consensus 76 ~l~Dtpg 82 (231)
++++.|.
T Consensus 86 ~v~q~~~ 92 (283)
T PRK13636 86 MVFQDPD 92 (283)
T ss_pred EEecCcc
Confidence 7888774
No 451
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.96 E-value=4.4e-10 Score=93.98 Aligned_cols=82 Identities=17% Similarity=0.084 Sum_probs=55.8
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccc-cccCCCCcceeeeee-eE----EeeCCcEE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFK-ASADSSGVTKTCEMK-TT----VLKDGQVV 75 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~-~~~~~~~~t~~~~~~-~~----~~~~~~~~ 75 (231)
++.|+++.+|++++|++.+| .+++|+|+||+|||||+++|+|...+. ..+..|.+....... .. ........
T Consensus 52 ~~~~~~~~iL~~is~~i~~G--e~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~ 129 (305)
T PRK14264 52 DVYYGDDHALKGVSMDIPEK--SVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVG 129 (305)
T ss_pred EEEeCCeeeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceE
Confidence 45677788999999999999 999999999999999999999986410 001233222221110 00 00124567
Q ss_pred EEEeCCCCcC
Q 038053 76 NVIDTPGLFD 85 (231)
Q Consensus 76 ~l~Dtpg~~~ 85 (231)
++++.+.+++
T Consensus 130 ~v~q~~~l~~ 139 (305)
T PRK14264 130 MVFQSPNPFP 139 (305)
T ss_pred EEccCCcccc
Confidence 8888887765
No 452
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.96 E-value=2e-10 Score=103.08 Aligned_cols=78 Identities=21% Similarity=0.160 Sum_probs=57.3
Q ss_pred CCCCCC-cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee---eEEeeCCcEEEE
Q 038053 2 SSGMGE-RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK---TTVLKDGQVVNV 77 (231)
Q Consensus 2 ~~~~~~-~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~l 77 (231)
+.+|++ .++|+|+++++++| ..++|+|++|||||||+|+|+|... +..|.+..+.... ...+ .....++
T Consensus 341 sf~Y~~~~~vL~~isl~i~~G--~~vaIvG~SGsGKSTLl~lL~g~~~----p~~G~I~i~g~~i~~~~~~l-r~~i~~V 413 (529)
T TIGR02868 341 SFGYPGSPPVLDGVSLDLPPG--ERVAILGPSGSGKSTLLMLLTGLLD----PLQGEVTLDGVSVSSLQDEL-RRRISVF 413 (529)
T ss_pred EEecCCCCceeecceEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCC----CCCcEEEECCEEhhhHHHHH-HhheEEE
Confidence 445653 56899999999999 9999999999999999999999988 3444444322110 1111 3467788
Q ss_pred EeCCCCcCC
Q 038053 78 IDTPGLFDS 86 (231)
Q Consensus 78 ~Dtpg~~~~ 86 (231)
.+.|-++++
T Consensus 414 ~Q~~~lF~~ 422 (529)
T TIGR02868 414 AQDAHLFDT 422 (529)
T ss_pred ccCcccccc
Confidence 999888764
No 453
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.96 E-value=4.1e-10 Score=90.67 Aligned_cols=46 Identities=20% Similarity=0.219 Sum_probs=41.3
Q ss_pred CCCCC-CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053 2 SSGMG-ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF 49 (231)
Q Consensus 2 ~~~~~-~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~ 49 (231)
++.|+ ++.+++++++++++| .+++|+|+||+|||||+++|+|...+
T Consensus 7 ~~~~~~~~~~l~~i~~~i~~G--e~~~l~G~nGsGKSTLl~~i~Gl~~~ 53 (236)
T cd03253 7 TFAYDPGRPVLKDVSFTIPAG--KKVAIVGPSGSGKSTILRLLFRFYDV 53 (236)
T ss_pred EEEeCCCCceeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcccCC
Confidence 45674 567999999999999 99999999999999999999999873
No 454
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.96 E-value=2.2e-09 Score=81.99 Aligned_cols=140 Identities=16% Similarity=0.084 Sum_probs=78.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
.+|+++|.+|||||||++.+++...... ...+............. .+ ..+.+.|++|..... .+ .
T Consensus 5 ~kv~~vG~~~vGKTsli~~~~~~~f~~~-~~~~T~~~~~~~~~~~~-~~~~~~l~~~d~~g~~~~~--------~~---~ 71 (169)
T cd01892 5 FLCFVLGAKGSGKSALLRAFLGRSFSLN-AYSPTIKPRYAVNTVEV-YGQEKYLILREVGEDEVAI--------LL---N 71 (169)
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCcc-cCCCccCcceEEEEEEE-CCeEEEEEEEecCCccccc--------cc---c
Confidence 7899999999999999999998764201 11121111111122222 33 345667888854321 01 1
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH-----h--cCCCCcHHHHHHHHHhh---------HHHHHhhcc--chhhhhhhh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA-----A--NGGQPYTDEFLAELKRG---------ATELRDQQA--EVDSLKEYS 163 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~---------~~~l~~~~~--~i~~is~~~ 163 (231)
...+..+|++++|+|+++.-+..... . ....|++ .+.++.|.. ..++...++ .+..+|+.+
T Consensus 72 ~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~i-iv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 150 (169)
T cd01892 72 DAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCL-FVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKL 150 (169)
T ss_pred hhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEE-EEEEcccccccccccccCHHHHHHHcCCCCCEEEEecc
Confidence 12246889999999998543222211 1 1123333 334443310 023333333 356789999
Q ss_pred HhhHHHHHHHHHHH
Q 038053 164 KQEISKLMGQMQES 177 (231)
Q Consensus 164 ~~~i~~l~~~i~~~ 177 (231)
|.|+.+++..+.+.
T Consensus 151 ~~~v~~lf~~l~~~ 164 (169)
T cd01892 151 GDSSNELFTKLATA 164 (169)
T ss_pred CccHHHHHHHHHHH
Confidence 99999988887664
No 455
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=98.95 E-value=7.7e-09 Score=79.44 Aligned_cols=136 Identities=15% Similarity=0.093 Sum_probs=75.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKR 100 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~ 100 (231)
.+|+++|.+|||||||+..+++..-. .....|...... .... .+ ..+.+.||||..... ..
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~----~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~-----------~~ 65 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFP----GEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDYD-----------RL 65 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC----CcCCCcceeeeEEEEEE-CCEEEEEEEEECCCchhhh-----------hh
Confidence 57999999999999999988865321 111112211111 1112 22 456789999964311 11
Q ss_pred HhhhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhh---------------------HHHHH
Q 038053 101 IGLAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRG---------------------ATELR 150 (231)
Q Consensus 101 ~~~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~---------------------~~~l~ 150 (231)
....+..+|++++|+|.++.-+-.... .....|++ .+.++.|.. +..+.
T Consensus 66 ~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~pii-lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 144 (174)
T cd01871 66 RPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII-LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA 144 (174)
T ss_pred hhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE-EEeeChhhccChhhHHHHhhccCCCCCHHHHHHHH
Confidence 122356889999999998533222211 11122333 233333210 01122
Q ss_pred hhcc--chhhhhhhhHhhHHHHHHHHHH
Q 038053 151 DQQA--EVDSLKEYSKQEISKLMGQMQE 176 (231)
Q Consensus 151 ~~~~--~i~~is~~~~~~i~~l~~~i~~ 176 (231)
...+ +++.+||++|.|+++++..+..
T Consensus 145 ~~~~~~~~~e~Sa~~~~~i~~~f~~l~~ 172 (174)
T cd01871 145 KEIGAVKYLECSALTQKGLKTVFDEAIR 172 (174)
T ss_pred HHcCCcEEEEecccccCCHHHHHHHHHH
Confidence 2222 4567899999999999877654
No 456
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.95 E-value=3.5e-10 Score=93.26 Aligned_cols=46 Identities=20% Similarity=0.059 Sum_probs=41.4
Q ss_pred CCCCC-CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053 2 SSGMG-ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF 49 (231)
Q Consensus 2 ~~~~~-~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~ 49 (231)
++.|+ ...++++++|++.+| .+++|+|+||||||||+++|+|...+
T Consensus 8 ~~~~~~~~~~l~~vsl~i~~G--e~~~l~G~nGsGKSTLl~~i~Gl~~~ 54 (275)
T PRK13639 8 KYSYPDGTEALKGINFKAEKG--EMVALLGPNGAGKSTLFLHFNGILKP 54 (275)
T ss_pred EEEeCCCCeeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 56675 467999999999999 99999999999999999999999873
No 457
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=98.95 E-value=3.4e-10 Score=94.56 Aligned_cols=39 Identities=13% Similarity=0.114 Sum_probs=37.2
Q ss_pred ccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053 9 VIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF 49 (231)
Q Consensus 9 ~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~ 49 (231)
.+|++++|++.+| .+++|+|+||||||||+++|+|...+
T Consensus 21 ~~l~~vsl~i~~G--e~v~iiG~nGsGKSTLl~~L~Gl~~p 59 (305)
T PRK13651 21 KALDNVSVEINQG--EFIAIIGQTGSGKTTFIEHLNALLLP 59 (305)
T ss_pred cceeeeEEEEeCC--CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 5999999999999 99999999999999999999999873
No 458
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.95 E-value=3e-09 Score=82.78 Aligned_cols=137 Identities=14% Similarity=0.050 Sum_probs=75.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEEee-CCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG 102 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~ 102 (231)
+|+++|.+|+|||||++.+++..... ....|...... ..... ....+.+.||||..... .+ ..
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~----~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~--------~l---~~ 66 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQ----VYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFD--------RL---RS 66 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC----ccCCcceeeeEEEEEECCEEEEEEEEECCCChhcc--------cc---cc
Confidence 68999999999999999999875421 11112211111 11110 12457789999964311 01 11
Q ss_pred hhcCCccEEEEEEECCCCCCHHHH---H------hcCCCCcHHHHHHHHHhhH---------------------HHHHhh
Q 038053 103 LAKGGIHAVLVVFSVRSRFSQEEE---A------ANGGQPYTDEFLAELKRGA---------------------TELRDQ 152 (231)
Q Consensus 103 ~~~~~~~~il~vvd~~~~~~~~~~---~------~~~~~~~~~~~~~~~~~~~---------------------~~l~~~ 152 (231)
..+..+|++++|+|+++.-+.... . .....|++ .+.++.|... ..+...
T Consensus 67 ~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~pii-lvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 145 (189)
T cd04134 67 LSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLV-LVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKR 145 (189)
T ss_pred ccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE-EEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHH
Confidence 234678999999998854222211 1 11223332 2233322100 011111
Q ss_pred cc--chhhhhhhhHhhHHHHHHHHHHH
Q 038053 153 QA--EVDSLKEYSKQEISKLMGQMQES 177 (231)
Q Consensus 153 ~~--~i~~is~~~~~~i~~l~~~i~~~ 177 (231)
.+ +.+.+||++|.|+++++..+...
T Consensus 146 ~~~~~~~e~SAk~~~~v~e~f~~l~~~ 172 (189)
T cd04134 146 INALRYLECSAKLNRGVNEAFTEAARV 172 (189)
T ss_pred cCCCEEEEccCCcCCCHHHHHHHHHHH
Confidence 12 45678999999999998877654
No 459
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.95 E-value=6.1e-10 Score=88.01 Aligned_cols=46 Identities=20% Similarity=0.225 Sum_probs=42.8
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF 49 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~ 49 (231)
+..|+++.+|++++.++++| .+.+|+|+||||||||++.++|...+
T Consensus 38 ~v~r~gk~iL~~isW~V~~g--e~W~I~G~NGsGKTTLL~ll~~~~~p 83 (257)
T COG1119 38 SVRRNGKKILGDLSWQVNPG--EHWAIVGPNGAGKTTLLSLLTGEHPP 83 (257)
T ss_pred EEEECCEeeccccceeecCC--CcEEEECCCCCCHHHHHHHHhcccCC
Confidence 44678999999999999999 99999999999999999999999873
No 460
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.95 E-value=3.4e-10 Score=93.99 Aligned_cols=46 Identities=24% Similarity=0.165 Sum_probs=40.8
Q ss_pred CCCCCC-----cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053 2 SSGMGE-----RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF 49 (231)
Q Consensus 2 ~~~~~~-----~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~ 49 (231)
++.|+. ..+|+++++++.+| .+++|+|+||||||||+++|+|...+
T Consensus 9 ~~~y~~~~~~~~~~L~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p 59 (290)
T PRK13634 9 EHRYQYKTPFERRALYDVNVSIPSG--SYVAIIGHTGSGKSTLLQHLNGLLQP 59 (290)
T ss_pred EEEECCCCcccccceeeEEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 455653 46999999999999 99999999999999999999999873
No 461
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.95 E-value=6.7e-09 Score=85.16 Aligned_cols=90 Identities=16% Similarity=0.215 Sum_probs=56.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccc---cC----CCC-------------cceeeeeeeEEeeCCcEEEEEeCCCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKAS---AD----SSG-------------VTKTCEMKTTVLKDGQVVNVIDTPGL 83 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~---~~----~~~-------------~t~~~~~~~~~~~~~~~~~l~Dtpg~ 83 (231)
.+|+|+|++|+|||||+++|+.....+.. .. .+. .+.........+ .+..+.++||||.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~-~~~~i~liDTPG~ 81 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEY-RDCVINLLDTPGH 81 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEee-CCEEEEEEECCCc
Confidence 58999999999999999999854321110 00 111 111122224455 6788999999997
Q ss_pred cCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHH
Q 038053 84 FDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEE 125 (231)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~ 125 (231)
.+. ..+. ...+..+|++++|+|+++++....
T Consensus 82 ~df-------~~~~----~~~l~~aD~~IlVvda~~g~~~~~ 112 (267)
T cd04169 82 EDF-------SEDT----YRTLTAVDSAVMVIDAAKGVEPQT 112 (267)
T ss_pred hHH-------HHHH----HHHHHHCCEEEEEEECCCCccHHH
Confidence 641 1112 223356799999999987665443
No 462
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=98.95 E-value=5.1e-10 Score=90.23 Aligned_cols=46 Identities=22% Similarity=0.149 Sum_probs=41.0
Q ss_pred CCCCC--CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053 2 SSGMG--ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF 49 (231)
Q Consensus 2 ~~~~~--~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~ 49 (231)
++.|+ ...++++++|++++| .+++|+|+||+|||||+++|+|...+
T Consensus 7 ~~~~~~~~~~~l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~ 54 (237)
T cd03252 7 RFRYKPDGPVILDNISLRIKPG--EVVGIVGRSGSGKSTLTKLIQRFYVP 54 (237)
T ss_pred EEecCCCCccceeceEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCcCC
Confidence 45665 357999999999999 99999999999999999999999873
No 463
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.94 E-value=2.7e-10 Score=92.59 Aligned_cols=81 Identities=14% Similarity=-0.003 Sum_probs=54.9
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc--cccccCCCCcceeeeeeeE-----EeeCCcE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA--FKASADSSGVTKTCEMKTT-----VLKDGQV 74 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~--~~~~~~~~~~t~~~~~~~~-----~~~~~~~ 74 (231)
++.|+.+.++++++|++.+| .+++|+|+||+|||||+++|+|... +.. +..|.+..+...... .......
T Consensus 10 ~~~~~~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i 86 (250)
T PRK14245 10 NFWYGDFHALKGISMEIEEK--SVVAFIGPSGCGKSTFLRLFNRMNDLIPAT-RLEGEIRIDGRNIYDKGVQVDELRKNV 86 (250)
T ss_pred EEEECCEeEEeeeeEEEeCC--CEEEEECCCCCCHHHHHHHHhhhhcccCCC-CCceEEEECCEecccccccHHHHhhhe
Confidence 56778888999999999999 9999999999999999999999631 100 012333322211100 0112356
Q ss_pred EEEEeCCCCcC
Q 038053 75 VNVIDTPGLFD 85 (231)
Q Consensus 75 ~~l~Dtpg~~~ 85 (231)
.++++.|.+++
T Consensus 87 ~~v~q~~~~~~ 97 (250)
T PRK14245 87 GMVFQRPNPFP 97 (250)
T ss_pred EEEecCCccCc
Confidence 78888887765
No 464
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.94 E-value=3e-09 Score=96.35 Aligned_cols=143 Identities=17% Similarity=0.244 Sum_probs=87.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccc-------------cCCCCcceeeeeeeEEee----CCcEEEEEeCCCCcCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKAS-------------ADSSGVTKTCEMKTTVLK----DGQVVNVIDTPGLFDS 86 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~-------------~~~~~~t~~~~~~~~~~~----~~~~~~l~Dtpg~~~~ 86 (231)
.+|+|+|..++|||||+..|+........ ....+.|.........+. ....+.++||||..+.
T Consensus 8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF 87 (600)
T PRK05433 8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF 87 (600)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH
Confidence 68999999999999999999753211100 011244444333333331 2456889999998752
Q ss_pred CCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhhH-------HHHHhhcc
Q 038053 87 SAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRGA-------TELRDQQA 154 (231)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-------~~l~~~~~ 154 (231)
..++ ..++..+|++++|+|+++++...... .....+++ .++|++|... .++.+.+.
T Consensus 88 -------~~~v----~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiI-vViNKiDl~~a~~~~v~~ei~~~lg 155 (600)
T PRK05433 88 -------SYEV----SRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEII-PVLNKIDLPAADPERVKQEIEDVIG 155 (600)
T ss_pred -------HHHH----HHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEE-EEEECCCCCcccHHHHHHHHHHHhC
Confidence 1122 23345679999999998777655543 22233433 3445554211 23333332
Q ss_pred ----chhhhhhhhHhhHHHHHHHHHHHH
Q 038053 155 ----EVDSLKEYSKQEISKLMGQMQESY 178 (231)
Q Consensus 155 ----~i~~is~~~~~~i~~l~~~i~~~~ 178 (231)
.++++|+++|.|+.++++.+....
T Consensus 156 ~~~~~vi~iSAktG~GI~~Ll~~I~~~l 183 (600)
T PRK05433 156 IDASDAVLVSAKTGIGIEEVLEAIVERI 183 (600)
T ss_pred CCcceEEEEecCCCCCHHHHHHHHHHhC
Confidence 367899999999999988886643
No 465
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=98.94 E-value=8.9e-09 Score=83.52 Aligned_cols=136 Identities=19% Similarity=0.196 Sum_probs=77.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcce-eeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTK-TCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~-~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
+|+++|.+|+|||||++.+++.... .....|. +........ .+ ..+.+.||+|..... .+.
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~----~~y~pTi~d~~~k~~~i-~~~~~~l~I~Dt~G~~~~~--------~~~--- 65 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFE----EQYTPTIEDFHRKLYSI-RGEVYQLDILDTSGNHPFP--------AMR--- 65 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCC----CCCCCChhHhEEEEEEE-CCEEEEEEEEECCCChhhh--------HHH---
Confidence 6899999999999999999865431 1111122 111222222 33 456789999965311 111
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH--------h----------cCCCCcHHHHHHHHHhh------HHHHHhhc----
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------A----------NGGQPYTDEFLAELKRG------ATELRDQQ---- 153 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~----------~~~~~~~~~~~~~~~~~------~~~l~~~~---- 153 (231)
...+..+|++++|+|+++.-+-.... . ....|++ .+.++.|.. .+++...+
T Consensus 66 ~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piI-ivgNK~Dl~~~~~v~~~ei~~~~~~~~ 144 (247)
T cd04143 66 RLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMV-ICGNKADRDFPREVQRDEVEQLVGGDE 144 (247)
T ss_pred HHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEE-EEEECccchhccccCHHHHHHHHHhcC
Confidence 11235789999999998543222111 0 0123333 333443311 12333222
Q ss_pred -cchhhhhhhhHhhHHHHHHHHHHH
Q 038053 154 -AEVDSLKEYSKQEISKLMGQMQES 177 (231)
Q Consensus 154 -~~i~~is~~~~~~i~~l~~~i~~~ 177 (231)
..++.+||+++.|+++++..+...
T Consensus 145 ~~~~~evSAktg~gI~elf~~L~~~ 169 (247)
T cd04143 145 NCAYFEVSAKKNSNLDEMFRALFSL 169 (247)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 146779999999999999888764
No 466
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.94 E-value=4.4e-09 Score=86.38 Aligned_cols=88 Identities=25% Similarity=0.377 Sum_probs=55.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccc--c-cCCC-------------CcceeeeeeeEEeeCCcEEEEEeCCCCcCCCC
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKA--S-ADSS-------------GVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSA 88 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~--~-~~~~-------------~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~ 88 (231)
+|+|+|++|+|||||+|.|++...... + ...+ +.+.........+ .+..+.++||||..+
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtPG~~~--- 76 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEW-KGHKINLIDTPGYAD--- 76 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEE-CCEEEEEEECcCHHH---
Confidence 489999999999999999975432110 0 0111 1222222333444 677889999999753
Q ss_pred CchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHH
Q 038053 89 GSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQE 124 (231)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~ 124 (231)
+......++..+|.+++|+|++.+....
T Consensus 77 --------f~~~~~~~l~~aD~~i~Vvd~~~g~~~~ 104 (268)
T cd04170 77 --------FVGETRAALRAADAALVVVSAQSGVEVG 104 (268)
T ss_pred --------HHHHHHHHHHHCCEEEEEEeCCCCCCHH
Confidence 1112223345679999999998665544
No 467
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=98.94 E-value=1.8e-08 Score=79.34 Aligned_cols=139 Identities=14% Similarity=0.175 Sum_probs=78.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRIG 102 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~ 102 (231)
.|+++|.+|+|||||++.++...-. . ...+..+.+........ .+ ..+.+.||+|... +.....
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~-~-~~~~Ti~~~~~~~~i~~-~~~~v~l~iwDtaGqe~-----------~~~l~~ 67 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFC-E-ACKSGVGVDFKIKTVEL-RGKKIRLQIWDTAGQER-----------FNSITS 67 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCC-C-cCCCcceeEEEEEEEEE-CCEEEEEEEEeCCCchh-----------hHHHHH
Confidence 5899999999999999999865431 1 01111122222222233 33 5667899999643 111122
Q ss_pred hhcCCccEEEEEEECCCCCCHHHHH--------h-cCCCCcHHHHHHHHHhh---------HHHHHhhc-c-chhhhhhh
Q 038053 103 LAKGGIHAVLVVFSVRSRFSQEEEA--------A-NGGQPYTDEFLAELKRG---------ATELRDQQ-A-EVDSLKEY 162 (231)
Q Consensus 103 ~~~~~~~~il~vvd~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~---------~~~l~~~~-~-~i~~is~~ 162 (231)
..+..+|++++|+|.++.-+-.... . ....+++ .+.++.|.. ...+.... + .++.+||+
T Consensus 68 ~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~pii-lVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAk 146 (202)
T cd04120 68 AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELL-LVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAK 146 (202)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEE-EEEECcccccccccCHHHHHHHHHhcCCCEEEEecCC
Confidence 3457889999999998543332221 1 1122222 233333310 01222121 2 46678999
Q ss_pred hHhhHHHHHHHHHHHH
Q 038053 163 SKQEISKLMGQMQESY 178 (231)
Q Consensus 163 ~~~~i~~l~~~i~~~~ 178 (231)
+|.|+.+++..+....
T Consensus 147 tg~gV~e~F~~l~~~~ 162 (202)
T cd04120 147 DNFNVDEIFLKLVDDI 162 (202)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999988876643
No 468
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.94 E-value=4.6e-09 Score=86.60 Aligned_cols=59 Identities=27% Similarity=0.387 Sum_probs=44.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSS 87 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~ 87 (231)
..++++|.||+|||||+|.|++.....++ ..+++|+..+... -+..+.++||||+....
T Consensus 119 ~~~~~vG~~nvGKSslin~l~~~~~~~~~-~~~g~T~~~~~~~----~~~~~~l~DtPG~~~~~ 177 (276)
T TIGR03596 119 IRAMIVGIPNVGKSTLINRLAGKKVAKVG-NRPGVTKGQQWIK----LSDGLELLDTPGILWPK 177 (276)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCccccC-CCCCeecceEEEE----eCCCEEEEECCCcccCC
Confidence 68999999999999999999998755553 5667776554322 23457899999996543
No 469
>PLN03127 Elongation factor Tu; Provisional
Probab=98.93 E-value=2.3e-09 Score=93.86 Aligned_cols=93 Identities=18% Similarity=0.171 Sum_probs=62.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCc------ccc--------ccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCC
Q 038053 23 KRTVVLLGRTGNGKSATGNSILGRKA------FKA--------SADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSA 88 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g~~~------~~~--------~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~ 88 (231)
..+|+++|+.++|||||++.|++... ... .....++|.+........ .+..+.++||||..+
T Consensus 61 ~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~~iDtPGh~~--- 136 (447)
T PLN03127 61 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYET-AKRHYAHVDCPGHAD--- 136 (447)
T ss_pred eEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcC-CCeEEEEEECCCccc---
Confidence 37899999999999999999984311 000 011256676655444444 567889999999753
Q ss_pred CchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH
Q 038053 89 GSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA 127 (231)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~ 127 (231)
+..........+|++++|+|+..++..++..
T Consensus 137 --------f~~~~~~g~~~aD~allVVda~~g~~~qt~e 167 (447)
T PLN03127 137 --------YVKNMITGAAQMDGGILVVSAPDGPMPQTKE 167 (447)
T ss_pred --------hHHHHHHHHhhCCEEEEEEECCCCCchhHHH
Confidence 2222222334689999999998777666544
No 470
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.93 E-value=6.6e-09 Score=95.05 Aligned_cols=138 Identities=11% Similarity=0.083 Sum_probs=81.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCCccccc--------------c-----------------CCCCcceeeeeeeEEee
Q 038053 22 GKRTVVLLGRTGNGKSATGNSILGRKAFKAS--------------A-----------------DSSGVTKTCEMKTTVLK 70 (231)
Q Consensus 22 ~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~--------------~-----------------~~~~~t~~~~~~~~~~~ 70 (231)
+..+|+++|++|+|||||+|.|+.....+.. . ...+.|.+.......+
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~- 101 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT- 101 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc-
Confidence 3378999999999999999999976533220 0 0123344444444444
Q ss_pred CCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhh
Q 038053 71 DGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRG 145 (231)
Q Consensus 71 ~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 145 (231)
.+..+.++||||..+ +...+......+|++++|+|+..++...... .....+.++.++|++|..
T Consensus 102 ~~~~~~liDtPG~~~-----------f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~ 170 (632)
T PRK05506 102 PKRKFIVADTPGHEQ-----------YTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLV 170 (632)
T ss_pred CCceEEEEECCChHH-----------HHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccc
Confidence 677888999999532 2222223446889999999998666554322 111222222333443311
Q ss_pred ------H----HHHHhhc---c----chhhhhhhhHhhHHHHH
Q 038053 146 ------A----TELRDQQ---A----EVDSLKEYSKQEISKLM 171 (231)
Q Consensus 146 ------~----~~l~~~~---~----~i~~is~~~~~~i~~l~ 171 (231)
. .++...+ . +++++|+++|.|+....
T Consensus 171 ~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~~~ 213 (632)
T PRK05506 171 DYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVTRS 213 (632)
T ss_pred cchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccccc
Confidence 0 1222111 1 47789999999987543
No 471
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=98.93 E-value=1.2e-09 Score=87.71 Aligned_cols=71 Identities=18% Similarity=0.268 Sum_probs=47.5
Q ss_pred cCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEEeeCCcEEEEEeCCC
Q 038053 10 IDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTVLKDGQVVNVIDTPG 82 (231)
Q Consensus 10 ~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~Dtpg 82 (231)
+++++++++++| .+++|+|+||+|||||+++|+|...+...+..|.+....... ..........++++.|.
T Consensus 1 ~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~ 72 (230)
T TIGR02770 1 LVQDLNLSLKRG--EVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPR 72 (230)
T ss_pred CccceeEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCch
Confidence 578999999999 999999999999999999999998731001233333222110 01111235677888874
No 472
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.93 E-value=2.8e-09 Score=89.61 Aligned_cols=61 Identities=30% Similarity=0.393 Sum_probs=47.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAG 89 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~ 89 (231)
.++++||.||+|||||||+|+|.....++ ..||+|...+... -...++++||||+......
T Consensus 133 ~~v~vvG~PNVGKSslIN~L~~k~~~~~s-~~PG~Tk~~q~i~----~~~~i~LlDtPGii~~~~~ 193 (322)
T COG1161 133 IRVGVVGYPNVGKSTLINRLLGKKVAKTS-NRPGTTKGIQWIK----LDDGIYLLDTPGIIPPKFD 193 (322)
T ss_pred eEEEEEcCCCCcHHHHHHHHhcccceeeC-CCCceecceEEEE----cCCCeEEecCCCcCCCCcc
Confidence 68999999999999999999999886664 5677776544332 3444789999998765433
No 473
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.93 E-value=7.9e-10 Score=98.59 Aligned_cols=45 Identities=13% Similarity=0.118 Sum_probs=40.6
Q ss_pred CCCC---CCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 2 SSGM---GERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 2 ~~~~---~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
++.| ++..++++++|++.+| .+++|+|+||||||||+++|+|...
T Consensus 264 ~~~~~~~~~~~~l~~is~~i~~G--e~~~l~G~NGsGKSTLl~~l~G~~~ 311 (500)
T TIGR02633 264 TCWDVINPHRKRVDDVSFSLRRG--EILGVAGLVGAGRTELVQALFGAYP 311 (500)
T ss_pred cccccccccccccccceeEEeCC--cEEEEeCCCCCCHHHHHHHHhCCCC
Confidence 4566 3467999999999999 9999999999999999999999986
No 474
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=98.93 E-value=1.5e-09 Score=83.46 Aligned_cols=136 Identities=13% Similarity=0.098 Sum_probs=79.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053 23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG 102 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~ 102 (231)
..+|+++|..||||||+++.|.........| |.......... .+..+.+.|.+|-.... ..-.
T Consensus 14 ~~~ililGl~~sGKTtll~~l~~~~~~~~~p-----T~g~~~~~i~~-~~~~~~~~d~gG~~~~~-----------~~w~ 76 (175)
T PF00025_consen 14 EIKILILGLDGSGKTTLLNRLKNGEISETIP-----TIGFNIEEIKY-KGYSLTIWDLGGQESFR-----------PLWK 76 (175)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHSSSEEEEEE-----ESSEEEEEEEE-TTEEEEEEEESSSGGGG-----------GGGG
T ss_pred EEEEEEECCCccchHHHHHHhhhccccccCc-----ccccccceeee-CcEEEEEEecccccccc-----------ccce
Confidence 3799999999999999999998765422212 22223333334 77888999999854311 1112
Q ss_pred hhcCCccEEEEEEECCCCCCHHHHH----------hcCCCCcHHHHHHHHHhhH----HHHHhhcc----------chhh
Q 038053 103 LAKGGIHAVLVVFSVRSRFSQEEEA----------ANGGQPYTDEFLAELKRGA----TELRDQQA----------EVDS 158 (231)
Q Consensus 103 ~~~~~~~~il~vvd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~----~~l~~~~~----------~i~~ 158 (231)
..+..+|++++|+|.++.-...+.. .....|+. .++++.+... .++.+.+. .+..
T Consensus 77 ~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piL-Il~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~ 155 (175)
T PF00025_consen 77 SYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPIL-ILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFS 155 (175)
T ss_dssp GGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEE-EEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEE
T ss_pred eeccccceeEEEEecccceeecccccchhhhcchhhcccceEE-EEeccccccCcchhhHHHhhhhhhhcccCCceEEEe
Confidence 3346789999999998432211111 12233333 3333322111 12222111 4666
Q ss_pred hhhhhHhhHHHHHHHHHH
Q 038053 159 LKEYSKQEISKLMGQMQE 176 (231)
Q Consensus 159 is~~~~~~i~~l~~~i~~ 176 (231)
.|+.+|+|+.+.++-+.+
T Consensus 156 ~sa~~g~Gv~e~l~WL~~ 173 (175)
T PF00025_consen 156 CSAKTGEGVDEGLEWLIE 173 (175)
T ss_dssp EBTTTTBTHHHHHHHHHH
T ss_pred eeccCCcCHHHHHHHHHh
Confidence 899999999887766554
No 475
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.93 E-value=1.2e-09 Score=96.51 Aligned_cols=137 Identities=11% Similarity=0.094 Sum_probs=80.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCccccc--------------cC-----------------CCCcceeeeeeeEEeeC
Q 038053 23 KRTVVLLGRTGNGKSATGNSILGRKAFKAS--------------AD-----------------SSGVTKTCEMKTTVLKD 71 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~--------------~~-----------------~~~~t~~~~~~~~~~~~ 71 (231)
..+|+++|+.|+|||||++.|+........ .. ..+.|.+.......+ .
T Consensus 27 ~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~-~ 105 (474)
T PRK05124 27 LLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST-E 105 (474)
T ss_pred ceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc-C
Confidence 479999999999999999999866432211 00 123444444444444 5
Q ss_pred CcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhh-
Q 038053 72 GQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRG- 145 (231)
Q Consensus 72 ~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~- 145 (231)
+..+.++||||..+ +..........+|++++|+|+..++...... .....+.++.++|++|..
T Consensus 106 ~~~i~~iDTPGh~~-----------f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~ 174 (474)
T PRK05124 106 KRKFIIADTPGHEQ-----------YTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVD 174 (474)
T ss_pred CcEEEEEECCCcHH-----------HHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeecccc
Confidence 67889999999322 2222223347889999999998766543322 111122222333443311
Q ss_pred -----H----HHHHh---h---c--cchhhhhhhhHhhHHHHH
Q 038053 146 -----A----TELRD---Q---Q--AEVDSLKEYSKQEISKLM 171 (231)
Q Consensus 146 -----~----~~l~~---~---~--~~i~~is~~~~~~i~~l~ 171 (231)
. .++.. . . .+++++|+++|.|+..+.
T Consensus 175 ~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 175 YSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred chhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence 0 12221 1 1 257889999999998654
No 476
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.93 E-value=4e-08 Score=80.92 Aligned_cols=89 Identities=20% Similarity=0.175 Sum_probs=70.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEee----------------CCcEEEEEeCCCCcCCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLK----------------DGQVVNVIDTPGLFDSS 87 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~----------------~~~~~~l~Dtpg~~~~~ 87 (231)
..+||||.||+|||||||+|+...... .+.|.+|.++....+... ....+.+.|.+|+-.+.
T Consensus 21 lkiGIVGlPNvGKST~fnalT~~~a~~--~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 21 LKIGIVGLPNVGKSTFFNALTKSKAGA--ANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred ceeeEeeCCCCchHHHHHHHhcCCCCc--cCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 799999999999999999999987652 367778877665543321 12357789999999999
Q ss_pred CCchHHHHHHHHHHhhhcCCccEEEEEEECC
Q 038053 88 AGSEFVGKEIVKRIGLAKGGIHAVLVVFSVR 118 (231)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~ 118 (231)
+..+.++..++..+... |.++.||++.
T Consensus 99 s~G~GLGN~FLs~iR~v----DaifhVVr~f 125 (391)
T KOG1491|consen 99 SAGEGLGNKFLSHIRHV----DAIFHVVRAF 125 (391)
T ss_pred ccCcCchHHHHHhhhhc----cceeEEEEec
Confidence 99999999998877554 8999999875
No 477
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.93 E-value=8.9e-09 Score=89.40 Aligned_cols=135 Identities=12% Similarity=0.091 Sum_probs=79.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccc--------------c-----------------CCCCcceeeeeeeEEeeCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKAS--------------A-----------------DSSGVTKTCEMKTTVLKDG 72 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~--------------~-----------------~~~~~t~~~~~~~~~~~~~ 72 (231)
.+|+++|+.|+|||||++.|+........ . ...+.|.+.......+ .+
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~-~~ 79 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFST-DK 79 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEcc-CC
Confidence 37999999999999999999754322110 0 0123445554444555 67
Q ss_pred cEEEEEeCCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhh--
Q 038053 73 QVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRG-- 145 (231)
Q Consensus 73 ~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-- 145 (231)
..+.++||||..+ +...+...+..+|.+++|+|+..++...... .....+.++.++|++|..
T Consensus 80 ~~~~liDtPGh~~-----------f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~ 148 (406)
T TIGR02034 80 RKFIVADTPGHEQ-----------YTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDY 148 (406)
T ss_pred eEEEEEeCCCHHH-----------HHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccc
Confidence 7889999999432 2222223456889999999998777655432 111222222233333311
Q ss_pred -H-------HHHHhh---cc----chhhhhhhhHhhHHHH
Q 038053 146 -A-------TELRDQ---QA----EVDSLKEYSKQEISKL 170 (231)
Q Consensus 146 -~-------~~l~~~---~~----~i~~is~~~~~~i~~l 170 (231)
. +.+... .. +++++|+.+|.|+...
T Consensus 149 ~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~ 188 (406)
T TIGR02034 149 DEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVSR 188 (406)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCccc
Confidence 0 122211 11 5778999999998754
No 478
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.92 E-value=5.4e-10 Score=92.72 Aligned_cols=67 Identities=21% Similarity=0.085 Sum_probs=48.9
Q ss_pred ccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-------EEeeCCcEEEEEeCC
Q 038053 9 VIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-------TVLKDGQVVNVIDTP 81 (231)
Q Consensus 9 ~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-------~~~~~~~~~~l~Dtp 81 (231)
.++++++|++.+| .+++|+|+||+|||||+++|+|...+ ..|.++.+..... ........+++++.|
T Consensus 20 ~~l~~vsl~i~~G--e~v~i~G~nGsGKSTLl~~l~Gl~~p----~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~ 93 (288)
T PRK13643 20 RALFDIDLEVKKG--SYTALIGHTGSGKSTLLQHLNGLLQP----TEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFP 93 (288)
T ss_pred cceeeeEEEEcCC--CEEEEECCCCChHHHHHHHHhcCCCC----CCcEEEECCEECccccccccHHHHHhhEEEEecCc
Confidence 5999999999999 99999999999999999999999873 4444433322110 000123567788877
No 479
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.92 E-value=1.1e-09 Score=97.86 Aligned_cols=46 Identities=11% Similarity=0.091 Sum_probs=41.0
Q ss_pred CCCCC---CCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 1 MSSGM---GERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 1 ~~~~~---~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
+++.| ++..++++++|++++| .+++|+|+||||||||+++|+|...
T Consensus 265 l~~~~~~~~~~~vl~~vsl~i~~G--e~~~l~G~NGsGKSTLlk~i~Gl~~ 313 (506)
T PRK13549 265 LTAWDPVNPHIKRVDDVSFSLRRG--EILGIAGLVGAGRTELVQCLFGAYP 313 (506)
T ss_pred CccccccccccccccceeeEEcCC--cEEEEeCCCCCCHHHHHHHHhCCCC
Confidence 35666 3467999999999999 9999999999999999999999975
No 480
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.92 E-value=3.9e-08 Score=88.87 Aligned_cols=90 Identities=19% Similarity=0.230 Sum_probs=54.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEee----------C-------CcEEEEEeCCCCcCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLK----------D-------GQVVNVIDTPGLFDS 86 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~----------~-------~~~~~l~Dtpg~~~~ 86 (231)
+.|+++|++|+|||||+|.|.|...... ..++.|........... . -..+.++||||....
T Consensus 7 p~V~i~Gh~~~GKTSLl~~l~~~~v~~~--~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f 84 (586)
T PRK04004 7 PIVVVLGHVDHGKTTLLDKIRGTAVAAK--EAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF 84 (586)
T ss_pred cEEEEECCCCCCHHHHHHHHhCcccccC--CCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence 6899999999999999999998754221 22333322111100000 0 012679999996531
Q ss_pred CCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHH
Q 038053 87 SAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEE 126 (231)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~ 126 (231)
..........+|++++|+|+++++.....
T Consensus 85 -----------~~~~~~~~~~aD~~IlVvDa~~g~~~qt~ 113 (586)
T PRK04004 85 -----------TNLRKRGGALADIAILVVDINEGFQPQTI 113 (586)
T ss_pred -----------HHHHHHhHhhCCEEEEEEECCCCCCHhHH
Confidence 11122234678999999999876655543
No 481
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=98.92 E-value=6.6e-10 Score=88.94 Aligned_cols=46 Identities=17% Similarity=0.114 Sum_probs=40.6
Q ss_pred CCCCCC---cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053 2 SSGMGE---RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF 49 (231)
Q Consensus 2 ~~~~~~---~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~ 49 (231)
++.|++ ..+++++++++++| .+++|+|+||+|||||+++|+|...+
T Consensus 18 ~~~~~~~~~~~~l~~is~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~ 66 (226)
T cd03248 18 TFAYPTRPDTLVLQDVSFTLHPG--EVTALVGPSGSGKSTVVALLENFYQP 66 (226)
T ss_pred EEEeCCCCCCccccceEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCcCC
Confidence 445653 46999999999999 99999999999999999999999874
No 482
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.92 E-value=2.9e-09 Score=84.29 Aligned_cols=96 Identities=20% Similarity=0.291 Sum_probs=68.4
Q ss_pred cCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHH
Q 038053 16 PTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGK 95 (231)
Q Consensus 16 ~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~ 95 (231)
|.+.+.+.-+|+|||.|.+|||||+..|++..... .+...+|..+..+.... ++..+.+.|.||+..+.+.....+.
T Consensus 55 FeV~KsGdaRValIGfPSVGKStlLs~iT~T~Sea--A~yeFTTLtcIpGvi~y-~ga~IQllDLPGIieGAsqgkGRGR 131 (364)
T KOG1486|consen 55 FEVLKSGDARVALIGFPSVGKSTLLSKITSTHSEA--ASYEFTTLTCIPGVIHY-NGANIQLLDLPGIIEGASQGKGRGR 131 (364)
T ss_pred eeeeccCCeEEEEecCCCccHHHHHHHhhcchhhh--hceeeeEEEeecceEEe-cCceEEEecCcccccccccCCCCCc
Confidence 34443345799999999999999999999876432 23444455555555555 8889999999999987665544444
Q ss_pred HHHHHHhhhcCCccEEEEEEECC
Q 038053 96 EIVKRIGLAKGGIHAVLVVFSVR 118 (231)
Q Consensus 96 ~~~~~~~~~~~~~~~il~vvd~~ 118 (231)
..+ .....+|.++.++|++
T Consensus 132 Qvi----avArtaDlilMvLDat 150 (364)
T KOG1486|consen 132 QVI----AVARTADLILMVLDAT 150 (364)
T ss_pred eEE----EEeecccEEEEEecCC
Confidence 332 2336789999999997
No 483
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.92 E-value=1.2e-08 Score=81.51 Aligned_cols=93 Identities=20% Similarity=0.146 Sum_probs=57.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCC-CccccccCCCCcceeeeeeeEEee--CCcEEEEEeCCCCcCCCCCchHHHHHHHH
Q 038053 23 KRTVVLLGRTGNGKSATGNSILGR-KAFKASADSSGVTKTCEMKTTVLK--DGQVVNVIDTPGLFDSSAGSEFVGKEIVK 99 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g~-~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~ 99 (231)
...|+++|++++|||||+|.|+|. ..+..+.....+|...-....... .+..++++||||+.+..... . ......
T Consensus 7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~-~-~~~~~~ 84 (224)
T cd01851 7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGE-F-EDDARL 84 (224)
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCc-h-hhhhHH
Confidence 368999999999999999999998 344444445566654333322221 24678999999998754322 0 111111
Q ss_pred HHhhhcCCccEEEEEEECC
Q 038053 100 RIGLAKGGIHAVLVVFSVR 118 (231)
Q Consensus 100 ~~~~~~~~~~~il~vvd~~ 118 (231)
+.... .-++++++.++..
T Consensus 85 ~~l~~-llss~~i~n~~~~ 102 (224)
T cd01851 85 FALAT-LLSSVLIYNSWET 102 (224)
T ss_pred HHHHH-HHhCEEEEeccCc
Confidence 11111 1457888887765
No 484
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.92 E-value=2.6e-09 Score=92.79 Aligned_cols=142 Identities=12% Similarity=0.152 Sum_probs=79.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccc-cCCCCcceeeeeeeEE--------------e-----------eCCcEEEE
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKAS-ADSSGVTKTCEMKTTV--------------L-----------KDGQVVNV 77 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~-~~~~~~t~~~~~~~~~--------------~-----------~~~~~~~l 77 (231)
.+|+++|..|+|||||+++|++....... ...-+.|....+.... . ..+..+.+
T Consensus 5 ~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l 84 (406)
T TIGR03680 5 VNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRVSF 84 (406)
T ss_pred EEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEEEE
Confidence 78999999999999999999885321100 0011222211110000 0 01457889
Q ss_pred EeCCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCC-CHHHHH------hcCCCCcHHHHHHHHHhh-----
Q 038053 78 IDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRF-SQEEEA------ANGGQPYTDEFLAELKRG----- 145 (231)
Q Consensus 78 ~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~----- 145 (231)
+||||... +...+......+|.+++|+|+++++ ..+... .....+++ .++|++|..
T Consensus 85 iDtPGh~~-----------f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iI-VvvNK~Dl~~~~~~ 152 (406)
T TIGR03680 85 VDAPGHET-----------LMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIV-IVQNKIDLVSKEKA 152 (406)
T ss_pred EECCCHHH-----------HHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEE-EEEEccccCCHHHH
Confidence 99999532 2222223335779999999998654 332222 11222222 233443310
Q ss_pred ---HHHHHhhc-------cchhhhhhhhHhhHHHHHHHHHHH
Q 038053 146 ---ATELRDQQ-------AEVDSLKEYSKQEISKLMGQMQES 177 (231)
Q Consensus 146 ---~~~l~~~~-------~~i~~is~~~~~~i~~l~~~i~~~ 177 (231)
..++.+.+ -+++++|+++|.|++.|++.+...
T Consensus 153 ~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~ 194 (406)
T TIGR03680 153 LENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKF 194 (406)
T ss_pred HHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHh
Confidence 01222222 157789999999999888887653
No 485
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.91 E-value=1.4e-09 Score=79.95 Aligned_cols=132 Identities=17% Similarity=0.213 Sum_probs=74.4
Q ss_pred EEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEee---CCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhh
Q 038053 28 LLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLK---DGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLA 104 (231)
Q Consensus 28 lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~ 104 (231)
++|++|+|||||+|.|++...... ....|. ......... ....+.++|+||..... ......
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~---~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-----------~~~~~~ 65 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPE---EYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFR-----------SLRRLY 65 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCc---ccccch-hheeeEEEEECCEEEEEEEEecCChHHHH-----------hHHHHH
Confidence 589999999999999999876211 111121 111111111 25678899999976521 111334
Q ss_pred cCCccEEEEEEECCCCCCHHHHH----------hcCCCCcHHHHHHHHHhhH----HH------HH-hhccchhhhhhhh
Q 038053 105 KGGIHAVLVVFSVRSRFSQEEEA----------ANGGQPYTDEFLAELKRGA----TE------LR-DQQAEVDSLKEYS 163 (231)
Q Consensus 105 ~~~~~~il~vvd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~----~~------l~-~~~~~i~~is~~~ 163 (231)
...+|.+++|+|++......+.. .....+++ .++++.+... .. .. ....+++.+|+..
T Consensus 66 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-vv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 144 (157)
T cd00882 66 YRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPII-LVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKT 144 (157)
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEE-EEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCC
Confidence 47889999999998543333221 22223332 3334433211 00 01 1112677789999
Q ss_pred HhhHHHHHHHHH
Q 038053 164 KQEISKLMGQMQ 175 (231)
Q Consensus 164 ~~~i~~l~~~i~ 175 (231)
+.++.+++..+.
T Consensus 145 ~~~i~~~~~~l~ 156 (157)
T cd00882 145 GENVEELFEELA 156 (157)
T ss_pred CCChHHHHHHHh
Confidence 988888877653
No 486
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.91 E-value=1.1e-09 Score=98.15 Aligned_cols=80 Identities=13% Similarity=0.072 Sum_probs=55.4
Q ss_pred cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCccee-ee----eeeEE-----eeCCcEEEE
Q 038053 8 RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKT-CE----MKTTV-----LKDGQVVNV 77 (231)
Q Consensus 8 ~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~-~~----~~~~~-----~~~~~~~~l 77 (231)
..++++++|++.+| .+++|+|+||||||||+++|+|...+ ..|.+... .. ..... .......++
T Consensus 297 ~~il~~is~~i~~G--e~~~l~G~NGsGKSTLl~~l~Gl~~p----~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v 370 (520)
T TIGR03269 297 VKAVDNVSLEVKEG--EIFGIVGTSGAGKTTLSKIIAGVLEP----TSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGIL 370 (520)
T ss_pred ceEEeeEEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CCeEEEEecCCccccccccchhhHHHHhhhEEEE
Confidence 57999999999999 99999999999999999999999863 33333321 10 00000 002346788
Q ss_pred EeCCCCcCCCCCchHH
Q 038053 78 IDTPGLFDSSAGSEFV 93 (231)
Q Consensus 78 ~Dtpg~~~~~~~~~~~ 93 (231)
++.|.+++..++.+.+
T Consensus 371 ~q~~~l~~~~tv~e~l 386 (520)
T TIGR03269 371 HQEYDLYPHRTVLDNL 386 (520)
T ss_pred ccCcccCCCCcHHHHH
Confidence 8888877755544443
No 487
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.90 E-value=9.9e-10 Score=92.70 Aligned_cols=81 Identities=14% Similarity=0.120 Sum_probs=55.8
Q ss_pred CCCCC--CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccc-cCCCCcceeeeeee------EEeeCC
Q 038053 2 SSGMG--ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKAS-ADSSGVTKTCEMKT------TVLKDG 72 (231)
Q Consensus 2 ~~~~~--~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~-~~~~~~t~~~~~~~------~~~~~~ 72 (231)
++.|. ..++|++++|++++| .+++|+|+||||||||+++|+|......+ +..|.+..+..... ... ..
T Consensus 87 s~~y~~~~~~~L~~is~~I~~G--e~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~l-r~ 163 (329)
T PRK14257 87 NFWYMNRTKHVLHDLNLDIKRN--KVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLEL-RT 163 (329)
T ss_pred EEEecCCCceeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhh-hc
Confidence 34553 457999999999999 99999999999999999999998753110 12333332221110 011 45
Q ss_pred cEEEEEeCCCCcC
Q 038053 73 QVVNVIDTPGLFD 85 (231)
Q Consensus 73 ~~~~l~Dtpg~~~ 85 (231)
...++++.|.++.
T Consensus 164 ~i~~v~q~~~~~~ 176 (329)
T PRK14257 164 RIGMVFQKPTPFE 176 (329)
T ss_pred cEEEEecCCccCC
Confidence 6788899988775
No 488
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.90 E-value=2.6e-08 Score=80.09 Aligned_cols=100 Identities=18% Similarity=0.225 Sum_probs=59.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee--------------------------------------
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-------------------------------------- 65 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-------------------------------------- 65 (231)
+.+++||++|+||||++++|+|...... ..+.+|+.+...
T Consensus 27 p~i~vvG~~~~GKSt~l~~i~g~~~~~~--~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 104 (240)
T smart00053 27 PQIAVVGGQSAGKSSVLENFVGRDFLPR--GSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT 104 (240)
T ss_pred CeEEEEcCCCccHHHHHHHHhCCCcccc--CCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhc
Confidence 5899999999999999999999852211 122222111000
Q ss_pred -------------eEEeeCCcEEEEEeCCCCcCCCCCc--hHHHHHHHHHHhhhcC-CccEEEEEEECCCCCCHHH
Q 038053 66 -------------TTVLKDGQVVNVIDTPGLFDSSAGS--EFVGKEIVKRIGLAKG-GIHAVLVVFSVRSRFSQEE 125 (231)
Q Consensus 66 -------------~~~~~~~~~~~l~Dtpg~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~il~vvd~~~~~~~~~ 125 (231)
....+....+.++||||+....... ......+...+...+. ..+.+++|+++..++...+
T Consensus 105 ~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d 180 (240)
T smart00053 105 GTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSD 180 (240)
T ss_pred CCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchh
Confidence 0000112568899999997532111 2333444444444445 4458999999876666544
No 489
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=98.90 E-value=1.5e-09 Score=91.57 Aligned_cols=75 Identities=15% Similarity=0.070 Sum_probs=52.2
Q ss_pred cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eE-----EeeCCcEEEEEeCC
Q 038053 8 RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TT-----VLKDGQVVNVIDTP 81 (231)
Q Consensus 8 ~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~-----~~~~~~~~~l~Dtp 81 (231)
..++++++|++.+| .+++|+|+||||||||+++|+|...+ ..|.+....... .. ........++++.|
T Consensus 28 ~~~l~~vsl~i~~G--e~~~IvG~sGsGKSTLl~~l~gl~~p----~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~ 101 (327)
T PRK11308 28 VKALDGVSFTLERG--KTLAVVGESGCGKSTLARLLTMIETP----TGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNP 101 (327)
T ss_pred eeEEeeeEEEECCC--CEEEEECCCCCcHHHHHHHHHcCCCC----CCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCc
Confidence 57899999999999 99999999999999999999999863 333333322110 00 00134577888887
Q ss_pred C--CcCCCC
Q 038053 82 G--LFDSSA 88 (231)
Q Consensus 82 g--~~~~~~ 88 (231)
. +.+..+
T Consensus 102 ~~~l~p~~~ 110 (327)
T PRK11308 102 YGSLNPRKK 110 (327)
T ss_pred hhhcCCccC
Confidence 3 444333
No 490
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.90 E-value=9.4e-10 Score=84.54 Aligned_cols=37 Identities=27% Similarity=0.148 Sum_probs=34.6
Q ss_pred CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhC
Q 038053 7 ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILG 45 (231)
Q Consensus 7 ~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g 45 (231)
..++|++++|++++| .+++|+|+||||||||+|+|++
T Consensus 7 ~~~~l~~isl~i~~G--~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 7 NVHNLQNLDVSIPLN--VLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred eeeeecceEEEEcCC--CEEEEECCCCCCHHHHHHHHhh
Confidence 467899999999999 9999999999999999999974
No 491
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.90 E-value=1.6e-09 Score=88.21 Aligned_cols=47 Identities=17% Similarity=0.161 Sum_probs=41.1
Q ss_pred CCCCCCCc-ccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccc
Q 038053 1 MSSGMGER-VIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFK 50 (231)
Q Consensus 1 ~~~~~~~~-~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~ 50 (231)
++++|+.. .++++++ .+.+| .+++|+|+||||||||+++|+|...+.
T Consensus 6 ~~~~y~~~~~~l~~i~-~i~~G--e~~~IvG~nGsGKSTLlk~l~Gl~~p~ 53 (255)
T cd03236 6 PVHRYGPNSFKLHRLP-VPREG--QVLGLVGPNGIGKSTALKILAGKLKPN 53 (255)
T ss_pred cceeecCcchhhhcCC-CCCCC--CEEEEECCCCCCHHHHHHHHhCCcCCC
Confidence 46788765 5899999 59999 999999999999999999999998743
No 492
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=98.90 E-value=8.4e-11 Score=89.81 Aligned_cols=88 Identities=17% Similarity=0.205 Sum_probs=63.0
Q ss_pred CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeee-----eeEEeeCCcEE
Q 038053 1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEM-----KTTVLKDGQVV 75 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~-----~~~~~~~~~~~ 75 (231)
++..||+=.++++++|++.+| ..=+||||||+||||+|..|+|+..+..| .+-.+... ..........+
T Consensus 11 vsVsF~GF~Aln~ls~~v~~G--elr~lIGpNGAGKTT~mD~ItGKtrp~~G----~v~f~g~~dl~~~~e~~IAr~GIG 84 (249)
T COG4674 11 VSVSFGGFKALNDLSFSVDPG--ELRVLIGPNGAGKTTLMDVITGKTRPQEG----EVLFDGDTDLTKLPEHRIARAGIG 84 (249)
T ss_pred eEEEEcceeeeeeeEEEecCC--eEEEEECCCCCCceeeeeeecccCCCCcc----eEEEcCchhhccCCHHHHHHhccC
Confidence 356789999999999999999 89999999999999999999999884332 21111100 00011122344
Q ss_pred EEEeCCCCcCCCCCchHHH
Q 038053 76 NVIDTPGLFDSSAGSEFVG 94 (231)
Q Consensus 76 ~l~Dtpg~~~~~~~~~~~~ 94 (231)
.=+++|..|+..++.+++.
T Consensus 85 RKFQ~PtVfe~ltV~eNLe 103 (249)
T COG4674 85 RKFQKPTVFENLTVRENLE 103 (249)
T ss_pred ccccCCeehhhccHHHHHH
Confidence 5689999999888777664
No 493
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.89 E-value=1.1e-09 Score=99.91 Aligned_cols=46 Identities=15% Similarity=0.189 Sum_probs=40.7
Q ss_pred CCCCC----CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053 2 SSGMG----ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF 49 (231)
Q Consensus 2 ~~~~~----~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~ 49 (231)
++.|+ ...++++++|++.+| .+++|+|+||||||||+++|+|...+
T Consensus 19 ~~~y~~~~~~~~~l~~is~~v~~G--e~~~lvG~nGsGKSTLl~~l~Gll~p 68 (623)
T PRK10261 19 NIAFMQEQQKIAAVRNLSFSLQRG--ETLAIVGESGSGKSVTALALMRLLEQ 68 (623)
T ss_pred EEEecCCCCceeEEEeeEEEECCC--CEEEEECCCCChHHHHHHHHHcCCCC
Confidence 45564 347999999999999 99999999999999999999999864
No 494
>PRK12289 GTPase RsgA; Reviewed
Probab=98.89 E-value=2.4e-09 Score=90.75 Aligned_cols=60 Identities=23% Similarity=0.303 Sum_probs=40.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCC-----C-cceeeeeeeEEeeCCcEEEEEeCCCCcCCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSS-----G-VTKTCEMKTTVLKDGQVVNVIDTPGLFDSS 87 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~-----~-~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~ 87 (231)
..++|+|+||+|||||||.|++.....++...+ - +|+....... . ..++++||||+....
T Consensus 173 ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l---~-~g~~liDTPG~~~~~ 238 (352)
T PRK12289 173 KITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFEL---P-NGGLLADTPGFNQPD 238 (352)
T ss_pred ceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEEC---C-CCcEEEeCCCccccc
Confidence 478999999999999999999987654432111 1 3444333222 1 224899999997543
No 495
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.89 E-value=2.7e-08 Score=73.68 Aligned_cols=82 Identities=18% Similarity=0.222 Sum_probs=59.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
.+|.++|..||||||+++.+.|.... .-..|...+...... ++..+.+.|..|.-. +..+-..
T Consensus 17 ~riLiLGLdNsGKTti~~kl~~~~~~-----~i~pt~gf~Iktl~~-~~~~L~iwDvGGq~~-----------lr~~W~n 79 (185)
T KOG0073|consen 17 VRILILGLDNSGKTTIVKKLLGEDTD-----TISPTLGFQIKTLEY-KGYTLNIWDVGGQKT-----------LRSYWKN 79 (185)
T ss_pred eEEEEEecCCCCchhHHHHhcCCCcc-----ccCCccceeeEEEEe-cceEEEEEEcCCcch-----------hHHHHHH
Confidence 79999999999999999999999863 233355455555555 788888999888443 2233333
Q ss_pred hcCCccEEEEEEECCCCCC
Q 038053 104 AKGGIHAVLVVFSVRSRFS 122 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~ 122 (231)
.++..|++++|+|.+++-.
T Consensus 80 YfestdglIwvvDssD~~r 98 (185)
T KOG0073|consen 80 YFESTDGLIWVVDSSDRMR 98 (185)
T ss_pred hhhccCeEEEEEECchHHH
Confidence 4467799999999985433
No 496
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.89 E-value=1.5e-09 Score=95.68 Aligned_cols=40 Identities=23% Similarity=0.219 Sum_probs=37.5
Q ss_pred cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053 8 RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF 49 (231)
Q Consensus 8 ~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~ 49 (231)
+++|++++|++.+| .+++|+|+||+|||||+++|+|...+
T Consensus 37 ~~IL~nVSfsI~~G--EivgIiGpNGSGKSTLLkiLaGLl~P 76 (549)
T PRK13545 37 HYALNNISFEVPEG--EIVGIIGLNGSGKSTLSNLIAGVTMP 76 (549)
T ss_pred ceEEeeeEEEEeCC--CEEEEEcCCCCCHHHHHHHHhCCCCC
Confidence 46899999999999 99999999999999999999999873
No 497
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=8.8e-10 Score=96.61 Aligned_cols=78 Identities=23% Similarity=0.210 Sum_probs=55.8
Q ss_pred CCCCCCc-ccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeee----eeeEEeeCCcEEE
Q 038053 2 SSGMGER-VIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCE----MKTTVLKDGQVVN 76 (231)
Q Consensus 2 ~~~~~~~-~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~----~~~~~~~~~~~~~ 76 (231)
+..|.+. +++.++++++++| ..++|||+||||||||+|.|+|...+ ..|..+.... .....| .+...+
T Consensus 327 ~~~y~~g~~~l~~l~~t~~~g--~~talvG~SGaGKSTLl~lL~G~~~~----~~G~I~vng~~l~~l~~~~~-~k~i~~ 399 (559)
T COG4988 327 SFRYPDGKPALSDLNLTIKAG--QLTALVGASGAGKSTLLNLLLGFLAP----TQGEIRVNGIDLRDLSPEAW-RKQISW 399 (559)
T ss_pred EEecCCCCcccCCceeEecCC--cEEEEECCCCCCHHHHHHHHhCcCCC----CCceEEECCccccccCHHHH-HhHeee
Confidence 3445443 8999999999999 99999999999999999999999884 3333333211 111122 456677
Q ss_pred EEeCCCCcCC
Q 038053 77 VIDTPGLFDS 86 (231)
Q Consensus 77 l~Dtpg~~~~ 86 (231)
+.|.|-+++.
T Consensus 400 v~Q~p~lf~g 409 (559)
T COG4988 400 VSQNPYLFAG 409 (559)
T ss_pred eCCCCccccc
Confidence 8888877763
No 498
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.89 E-value=3.4e-09 Score=75.00 Aligned_cols=131 Identities=15% Similarity=0.189 Sum_probs=80.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
.++++||+.|||||||++.|-|....-. -|.. +++ +.. ..|||||-|-. .......+..
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lyk------KTQA-----ve~-~d~--~~IDTPGEy~~-------~~~~Y~aL~t 60 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYK------KTQA-----VEF-NDK--GDIDTPGEYFE-------HPRWYHALIT 60 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhc------ccce-----eec-cCc--cccCCchhhhh-------hhHHHHHHHH
Confidence 5799999999999999999999875211 1111 111 111 26999997641 2233344555
Q ss_pred hcCCccEEEEEEECCCCCCHHHHHh--cCCCCcHHHHHHHHHh------hH--HHHHhh-ccchhhhhhhhHhhHHHHHH
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEEEAA--NGGQPYTDEFLAELKR------GA--TELRDQ-QAEVDSLKEYSKQEISKLMG 172 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~------~~--~~l~~~-~~~i~~is~~~~~~i~~l~~ 172 (231)
....+|++++|..+.+.++.....+ ...++. +-++++.+. .. +-|.+. ..+|+.+|+....|+++|++
T Consensus 61 t~~dadvi~~v~~and~~s~f~p~f~~~~~k~v-IgvVTK~DLaed~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~ 139 (148)
T COG4917 61 TLQDADVIIYVHAANDPESRFPPGFLDIGVKKV-IGVVTKADLAEDADISLVKRWLREAGAEPIFETSAVDNQGVEELVD 139 (148)
T ss_pred HhhccceeeeeecccCccccCCcccccccccce-EEEEecccccchHhHHHHHHHHHHcCCcceEEEeccCcccHHHHHH
Confidence 5678899999999887665554331 122222 222233221 11 122221 23899999999999999888
Q ss_pred HHHH
Q 038053 173 QMQE 176 (231)
Q Consensus 173 ~i~~ 176 (231)
.+..
T Consensus 140 ~L~~ 143 (148)
T COG4917 140 YLAS 143 (148)
T ss_pred HHHh
Confidence 7654
No 499
>PRK00098 GTPase RsgA; Reviewed
Probab=98.89 E-value=7e-09 Score=86.41 Aligned_cols=58 Identities=28% Similarity=0.295 Sum_probs=39.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccC-----CCC-cceeeeeeeEEeeCCcEEEEEeCCCCcC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASAD-----SSG-VTKTCEMKTTVLKDGQVVNVIDTPGLFD 85 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~-----~~~-~t~~~~~~~~~~~~~~~~~l~Dtpg~~~ 85 (231)
..++|+|+||+|||||+|+|+|......+.. .|. +|+...... ....++++||||+..
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~----~~~~~~~~DtpG~~~ 228 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYD----LPGGGLLIDTPGFSS 228 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEE----cCCCcEEEECCCcCc
Confidence 7899999999999999999999876544311 111 333222221 123458999999984
No 500
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.89 E-value=1.8e-09 Score=98.60 Aligned_cols=79 Identities=16% Similarity=0.125 Sum_probs=54.5
Q ss_pred cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eE-----EeeCCcEEEEEeCC
Q 038053 8 RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TT-----VLKDGQVVNVIDTP 81 (231)
Q Consensus 8 ~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~-----~~~~~~~~~l~Dtp 81 (231)
..++++++|++.+| .+++|+|+||||||||+++|+|...+ ..|.+....... .. ........++++.|
T Consensus 337 ~~~l~~vs~~i~~G--e~~~lvG~nGsGKSTLlk~i~Gl~~p----~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~ 410 (623)
T PRK10261 337 VHAVEKVSFDLWPG--ETLSLVGESGSGKSTTGRALLRLVES----QGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDP 410 (623)
T ss_pred eEEEeeeEeEEcCC--CEEEEECCCCCCHHHHHHHHHcCCCC----CCcEEEECCEECCcCCHHHHHHhcCCeEEEecCc
Confidence 46899999999999 99999999999999999999999873 334333322110 00 00023567788887
Q ss_pred --CCcCCCCCchH
Q 038053 82 --GLFDSSAGSEF 92 (231)
Q Consensus 82 --g~~~~~~~~~~ 92 (231)
.+++..++.+.
T Consensus 411 ~~~l~~~~tv~~~ 423 (623)
T PRK10261 411 YASLDPRQTVGDS 423 (623)
T ss_pred hhhcCCCCCHHHH
Confidence 46655554443
Done!