Query 038053
Match_columns 231
No_of_seqs 204 out of 3194
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 11:50:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038053.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038053hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xtp_A GTPase IMAP family memb 99.7 3.1E-16 1.1E-20 126.8 16.2 155 23-180 22-208 (260)
2 3lxx_A GTPase IMAP family memb 99.7 3.3E-16 1.1E-20 125.1 14.7 102 22-125 28-129 (239)
3 3lxw_A GTPase IMAP family memb 99.7 8.1E-17 2.8E-21 129.5 10.3 104 22-127 20-124 (247)
4 3iev_A GTP-binding protein ERA 99.7 8.9E-16 3E-20 127.3 15.2 153 22-178 9-180 (308)
5 1wf3_A GTP-binding protein; GT 99.7 3.1E-16 1.1E-20 129.6 12.1 148 24-177 8-170 (301)
6 3iby_A Ferrous iron transport 99.7 3E-16 1E-20 126.9 9.7 148 24-177 2-164 (256)
7 2gj8_A MNME, tRNA modification 99.6 9.5E-16 3.2E-20 116.4 10.1 149 24-178 5-164 (172)
8 3i8s_A Ferrous iron transport 99.6 6E-16 2.1E-20 126.3 9.1 148 24-177 4-166 (274)
9 3a1s_A Iron(II) transport prot 99.6 6.6E-15 2.3E-19 119.1 14.3 148 24-179 6-166 (258)
10 1mky_A Probable GTP-binding pr 99.6 5.3E-15 1.8E-19 128.3 13.7 150 24-178 2-164 (439)
11 3k53_A Ferrous iron transport 99.6 1.2E-15 4.1E-20 124.2 8.8 148 24-179 4-165 (271)
12 4dhe_A Probable GTP-binding pr 99.6 2.3E-14 8E-19 112.7 14.4 156 22-179 28-210 (223)
13 1ega_A Protein (GTP-binding pr 99.6 5.6E-15 1.9E-19 122.1 11.0 147 24-177 9-172 (301)
14 4a9a_A Ribosome-interacting GT 99.6 4E-15 1.4E-19 125.9 9.6 103 14-123 63-165 (376)
15 2hjg_A GTP-binding protein ENG 99.6 3.3E-15 1.1E-19 129.5 8.4 159 23-184 175-353 (436)
16 1mky_A Probable GTP-binding pr 99.6 3.2E-15 1.1E-19 129.7 7.2 161 23-186 180-361 (439)
17 2hjg_A GTP-binding protein ENG 99.6 7.2E-16 2.4E-20 133.7 3.0 149 24-178 4-163 (436)
18 4dcu_A GTP-binding protein ENG 99.6 1.1E-14 3.8E-19 126.9 9.7 160 23-185 195-374 (456)
19 3b1v_A Ferrous iron uptake tra 99.5 3.8E-14 1.3E-18 115.4 11.4 145 24-177 4-161 (272)
20 4dcu_A GTP-binding protein ENG 99.5 1.4E-15 4.9E-20 132.5 2.9 148 24-177 24-182 (456)
21 1xzp_A Probable tRNA modificat 99.5 3.6E-15 1.2E-19 130.4 5.3 150 24-179 244-404 (482)
22 3gee_A MNME, tRNA modification 99.5 1.5E-14 5.3E-19 126.3 9.0 150 24-179 234-397 (476)
23 2wji_A Ferrous iron transport 99.5 2E-13 6.7E-18 102.6 13.5 146 24-177 4-162 (165)
24 1svi_A GTP-binding protein YSX 99.5 1.8E-13 6.2E-18 105.2 13.6 150 22-177 22-192 (195)
25 3pqc_A Probable GTP-binding pr 99.5 2.2E-13 7.6E-18 104.4 13.7 150 23-178 23-192 (195)
26 3geh_A MNME, tRNA modification 99.5 7.3E-15 2.5E-19 127.9 4.3 150 24-179 225-383 (462)
27 2wjg_A FEOB, ferrous iron tran 99.5 7.1E-14 2.4E-18 106.9 9.2 151 24-182 8-171 (188)
28 2dyk_A GTP-binding protein; GT 99.5 9.3E-14 3.2E-18 103.3 9.3 146 24-176 2-158 (161)
29 2lkc_A Translation initiation 99.5 2.9E-13 9.8E-18 102.4 10.1 141 24-179 9-170 (178)
30 2qu8_A Putative nucleolar GTP- 99.5 6E-12 2.1E-16 99.5 18.1 151 23-180 29-205 (228)
31 2e87_A Hypothetical protein PH 99.5 7E-12 2.4E-16 105.9 19.2 152 24-182 168-338 (357)
32 2j69_A Bacterial dynamin-like 99.5 5E-13 1.7E-17 121.9 12.7 28 24-51 70-97 (695)
33 1lnz_A SPO0B-associated GTP-bi 99.5 2.6E-14 9E-19 119.9 3.9 148 24-178 159-328 (342)
34 1pui_A ENGB, probable GTP-bind 99.5 5.2E-13 1.8E-17 103.9 11.1 167 2-178 10-197 (210)
35 1m2o_B GTP-binding protein SAR 99.4 8.4E-14 2.9E-18 107.2 6.0 147 9-176 12-188 (190)
36 3t5d_A Septin-7; GTP-binding p 99.4 7.4E-13 2.5E-17 107.8 11.7 156 19-176 4-200 (274)
37 1udx_A The GTP-binding protein 99.4 3.4E-13 1.2E-17 115.7 10.1 160 11-179 147-324 (416)
38 1f6b_A SAR1; gtpases, N-termin 99.4 3.3E-14 1.1E-18 110.2 3.0 147 9-176 14-195 (198)
39 4bas_A ADP-ribosylation factor 99.4 4.2E-13 1.5E-17 103.3 9.1 142 22-179 16-188 (199)
40 3tw8_B RAS-related protein RAB 99.4 1.3E-13 4.4E-18 104.4 6.0 143 23-180 9-171 (181)
41 1kao_A RAP2A; GTP-binding prot 99.4 3.9E-13 1.3E-17 100.2 8.1 139 24-178 4-164 (167)
42 1upt_A ARL1, ADP-ribosylation 99.4 4.6E-13 1.6E-17 100.5 8.2 137 24-178 8-167 (171)
43 1zd9_A ADP-ribosylation factor 99.4 1.9E-13 6.4E-18 104.8 6.2 138 24-178 23-183 (188)
44 1ksh_A ARF-like protein 2; sma 99.4 4.5E-13 1.5E-17 102.3 8.0 137 24-178 19-178 (186)
45 2oil_A CATX-8, RAS-related pro 99.4 1.7E-13 5.7E-18 105.3 5.0 142 24-179 26-187 (193)
46 3bc1_A RAS-related protein RAB 99.4 7.4E-13 2.5E-17 101.3 8.3 142 24-180 12-185 (195)
47 2h57_A ADP-ribosylation factor 99.4 1.8E-13 6.1E-18 105.0 4.6 139 24-178 22-185 (190)
48 1zbd_A Rabphilin-3A; G protein 99.4 4.4E-13 1.5E-17 103.8 6.8 143 24-180 9-171 (203)
49 2gf9_A RAS-related protein RAB 99.4 4.2E-13 1.4E-17 102.8 6.6 142 24-179 23-184 (189)
50 2bme_A RAB4A, RAS-related prot 99.4 1.3E-12 4.6E-17 99.4 9.3 141 24-179 11-172 (186)
51 1r2q_A RAS-related protein RAB 99.4 2.5E-13 8.5E-18 101.7 5.0 139 24-176 7-165 (170)
52 4dsu_A GTPase KRAS, isoform 2B 99.4 1.9E-12 6.3E-17 98.7 9.9 142 24-181 5-167 (189)
53 1r8s_A ADP-ribosylation factor 99.4 6.3E-13 2.2E-17 99.1 7.1 136 25-178 2-160 (164)
54 3clv_A RAB5 protein, putative; 99.4 3.8E-13 1.3E-17 103.6 5.8 142 24-180 8-204 (208)
55 2qtf_A Protein HFLX, GTP-bindi 99.4 8.8E-12 3E-16 105.4 14.6 148 24-178 180-352 (364)
56 2a9k_A RAS-related protein RAL 99.4 1.1E-12 3.6E-17 99.8 8.0 140 24-179 19-180 (187)
57 3tkl_A RAS-related protein RAB 99.4 7.3E-13 2.5E-17 101.7 7.1 142 24-180 17-179 (196)
58 1z0j_A RAB-22, RAS-related pro 99.4 2.4E-13 8.3E-18 101.8 4.2 140 24-177 7-166 (170)
59 2fg5_A RAB-22B, RAS-related pr 99.4 3.9E-13 1.3E-17 103.4 5.4 141 24-177 24-183 (192)
60 1moz_A ARL1, ADP-ribosylation 99.4 3.6E-13 1.2E-17 102.3 5.1 137 24-178 19-178 (183)
61 1z0f_A RAB14, member RAS oncog 99.4 2.4E-13 8.3E-18 102.7 4.1 139 24-177 16-175 (179)
62 2qm8_A GTPase/ATPase; G protei 99.4 9.2E-13 3.2E-17 110.4 8.0 41 4-46 38-78 (337)
63 1u8z_A RAS-related protein RAL 99.4 1E-12 3.4E-17 98.0 7.3 139 24-178 5-165 (168)
64 1fzq_A ADP-ribosylation factor 99.4 8.6E-13 2.9E-17 100.6 6.9 138 23-178 16-176 (181)
65 2fn4_A P23, RAS-related protei 99.4 9.7E-13 3.3E-17 99.5 6.7 141 23-179 9-171 (181)
66 1sgw_A Putative ABC transporte 99.4 8.3E-14 2.8E-18 109.4 0.6 83 2-93 17-99 (214)
67 2bov_A RAla, RAS-related prote 99.4 1.7E-12 5.8E-17 100.4 8.0 141 23-179 14-176 (206)
68 1jwy_B Dynamin A GTPase domain 99.3 2.8E-12 9.7E-17 106.1 9.4 107 72-179 130-261 (315)
69 3dz8_A RAS-related protein RAB 99.3 2.5E-13 8.5E-18 104.4 2.8 143 24-179 24-185 (191)
70 1zj6_A ADP-ribosylation factor 99.3 1.1E-12 3.8E-17 100.3 6.3 137 24-178 17-176 (187)
71 3con_A GTPase NRAS; structural 99.3 3.2E-12 1.1E-16 97.8 8.9 140 24-179 22-182 (190)
72 2ew1_A RAS-related protein RAB 99.3 2.9E-12 1E-16 99.5 8.7 141 24-179 27-188 (201)
73 1z08_A RAS-related protein RAB 99.3 8.7E-13 3E-17 98.9 5.5 139 24-177 7-166 (170)
74 2x77_A ADP-ribosylation factor 99.3 1.5E-12 5.1E-17 99.6 6.9 137 24-178 23-182 (189)
75 3fvq_A Fe(3+) IONS import ATP- 99.3 1.3E-13 4.3E-18 116.0 0.9 87 1-93 10-101 (359)
76 2il1_A RAB12; G-protein, GDP, 99.3 6.7E-13 2.3E-17 102.1 4.9 140 24-178 27-188 (192)
77 3cph_A RAS-related protein SEC 99.3 6.6E-13 2.3E-17 103.4 4.9 141 24-179 21-181 (213)
78 2aka_B Dynamin-1; fusion prote 99.3 1.5E-11 5E-16 101.0 13.1 153 24-177 27-250 (299)
79 2pze_A Cystic fibrosis transme 99.3 3E-13 1E-17 107.4 2.8 69 2-86 13-83 (229)
80 2g6b_A RAS-related protein RAB 99.3 1E-11 3.5E-16 93.9 11.2 142 24-179 11-173 (180)
81 1h65_A Chloroplast outer envel 99.3 1.1E-11 3.6E-16 100.7 11.8 92 23-118 39-130 (270)
82 1ni3_A YCHF GTPase, YCHF GTP-b 99.3 3E-12 1E-16 108.9 8.9 94 17-118 16-126 (392)
83 2efe_B Small GTP-binding prote 99.3 6E-13 2E-17 100.9 4.1 141 24-178 13-173 (181)
84 2pcj_A ABC transporter, lipopr 99.3 8.2E-14 2.8E-18 110.3 -0.8 86 2-93 11-103 (224)
85 1b0u_A Histidine permease; ABC 99.3 9.6E-14 3.3E-18 112.4 -0.4 86 2-93 13-114 (262)
86 1ky3_A GTP-binding protein YPT 99.3 1.1E-12 3.6E-17 99.4 5.4 142 23-178 8-176 (182)
87 3q72_A GTP-binding protein RAD 99.3 7.7E-12 2.6E-16 93.3 10.0 140 24-178 3-162 (166)
88 1g16_A RAS-related protein SEC 99.3 6E-13 2E-17 99.7 3.9 141 24-179 4-164 (170)
89 2erx_A GTP-binding protein DI- 99.3 3.6E-12 1.2E-16 95.4 8.0 139 24-177 4-164 (172)
90 2h17_A ADP-ribosylation factor 99.3 1.8E-12 6E-17 98.7 6.4 135 24-176 22-179 (181)
91 3rlf_A Maltose/maltodextrin im 99.3 1.7E-13 5.9E-18 115.9 0.8 87 1-93 9-96 (381)
92 2a5j_A RAS-related protein RAB 99.3 6.1E-13 2.1E-17 102.2 3.8 141 24-179 22-183 (191)
93 2bcg_Y Protein YP2, GTP-bindin 99.3 7.5E-13 2.6E-17 102.8 4.3 141 24-179 9-170 (206)
94 3def_A T7I23.11 protein; chlor 99.3 1.5E-11 5E-16 99.5 12.0 92 23-118 36-127 (262)
95 1vpl_A ABC transporter, ATP-bi 99.3 1.3E-13 4.4E-18 111.3 -0.2 85 2-93 22-109 (256)
96 2nzj_A GTP-binding protein REM 99.3 1.7E-11 5.8E-16 92.2 11.6 142 23-178 4-167 (175)
97 3oes_A GTPase rhebl1; small GT 99.3 2.4E-12 8.4E-17 99.6 7.1 142 23-179 24-186 (201)
98 2yc2_C IFT27, small RAB-relate 99.3 9.4E-13 3.2E-17 102.0 4.6 141 24-179 21-191 (208)
99 2nq2_C Hypothetical ABC transp 99.3 3.3E-13 1.1E-17 108.7 2.1 74 2-91 11-85 (253)
100 3lvq_E ARF-GAP with SH3 domain 99.3 1.2E-12 4E-17 115.2 5.8 143 24-184 323-488 (497)
101 2f7s_A C25KG, RAS-related prot 99.3 2.6E-12 8.9E-17 100.5 7.0 139 24-178 26-197 (217)
102 2b6h_A ADP-ribosylation factor 99.3 1.6E-12 5.4E-17 100.1 5.7 138 22-177 28-188 (192)
103 2o52_A RAS-related protein RAB 99.3 2.3E-12 7.9E-17 99.8 6.4 141 24-179 26-187 (200)
104 2olj_A Amino acid ABC transpor 99.3 1.4E-13 4.8E-18 111.4 -0.6 86 2-93 31-121 (263)
105 4gzl_A RAS-related C3 botulinu 99.3 2.5E-12 8.5E-17 100.0 6.5 139 22-176 29-201 (204)
106 1ji0_A ABC transporter; ATP bi 99.3 1.8E-13 6.1E-18 109.5 -0.1 83 2-90 13-99 (240)
107 1x3s_A RAS-related protein RAB 99.3 5.9E-13 2E-17 102.1 2.8 141 24-178 16-176 (195)
108 1wms_A RAB-9, RAB9, RAS-relate 99.3 1.9E-12 6.7E-17 97.6 5.6 140 24-178 8-172 (177)
109 1c1y_A RAS-related protein RAP 99.3 1.8E-12 6.2E-17 96.7 5.3 139 24-177 4-164 (167)
110 1ek0_A Protein (GTP-binding pr 99.3 5.3E-12 1.8E-16 94.3 7.9 139 24-176 4-165 (170)
111 1z2a_A RAS-related protein RAB 99.3 7.8E-13 2.7E-17 98.8 3.2 139 24-177 6-164 (168)
112 2fu5_C RAS-related protein RAB 99.3 8.9E-13 3.1E-17 100.2 3.3 140 24-178 9-169 (183)
113 3kkq_A RAS-related protein M-R 99.3 1.1E-12 3.6E-17 99.8 3.5 140 23-178 18-180 (183)
114 2hxs_A RAB-26, RAS-related pro 99.3 1.4E-12 4.7E-17 98.6 4.1 141 23-177 6-170 (178)
115 1z06_A RAS-related protein RAB 99.3 1.3E-12 4.3E-17 100.1 3.9 141 23-177 20-185 (189)
116 3q85_A GTP-binding protein REM 99.3 1.8E-12 6.3E-17 97.0 4.3 141 24-178 3-165 (169)
117 3tif_A Uncharacterized ABC tra 99.3 5.8E-13 2E-17 106.2 1.5 86 2-93 8-104 (235)
118 2y8e_A RAB-protein 6, GH09086P 99.3 2.4E-12 8.1E-17 97.2 4.8 139 24-177 15-174 (179)
119 1g6h_A High-affinity branched- 99.3 1.5E-13 5E-18 111.1 -2.2 82 2-89 14-99 (257)
120 1g29_1 MALK, maltose transport 99.3 7E-13 2.4E-17 112.3 1.9 87 1-93 9-102 (372)
121 4djt_A GTP-binding nuclear pro 99.3 1.2E-12 4E-17 102.6 3.0 144 23-180 11-175 (218)
122 2it1_A 362AA long hypothetical 99.3 5.8E-13 2E-17 112.2 1.3 88 1-94 9-97 (362)
123 2yyz_A Sugar ABC transporter, 99.3 4.8E-13 1.6E-17 112.7 0.7 87 1-93 9-96 (359)
124 2www_A Methylmalonic aciduria 99.3 7.2E-12 2.5E-16 105.5 8.0 95 71-180 165-279 (349)
125 3t5g_A GTP-binding protein RHE 99.3 2.5E-11 8.7E-16 91.9 10.3 140 23-178 6-167 (181)
126 4g1u_C Hemin import ATP-bindin 99.3 1.8E-13 6.3E-18 111.0 -1.9 83 2-90 18-103 (266)
127 3t1o_A Gliding protein MGLA; G 99.3 1.4E-12 4.8E-17 100.0 3.2 144 24-179 15-191 (198)
128 2hup_A RAS-related protein RAB 99.3 5.1E-12 1.7E-16 98.0 6.4 140 24-178 30-191 (201)
129 1z47_A CYSA, putative ABC-tran 99.3 5.6E-13 1.9E-17 112.0 1.0 87 1-93 20-108 (355)
130 1wb1_A Translation elongation 99.3 8E-11 2.7E-15 103.1 14.5 141 24-177 20-186 (482)
131 2x2e_A Dynamin-1; nitration, h 99.3 8E-11 2.7E-15 99.2 14.0 152 24-176 32-254 (353)
132 2cxx_A Probable GTP-binding pr 99.3 1.8E-11 6.3E-16 93.3 9.1 147 24-179 2-183 (190)
133 2qag_B Septin-6, protein NEDD5 99.3 1.9E-11 6.6E-16 104.7 9.9 81 2-86 22-108 (427)
134 1mv5_A LMRA, multidrug resista 99.3 1.7E-12 5.7E-17 104.0 3.2 77 2-85 8-89 (243)
135 1oxx_K GLCV, glucose, ABC tran 99.3 6.3E-13 2.1E-17 111.8 0.7 86 2-93 10-103 (353)
136 2p5s_A RAS and EF-hand domain 99.3 1.6E-11 5.5E-16 94.8 8.6 140 23-177 28-194 (199)
137 3o47_A ADP-ribosylation factor 99.3 3.8E-12 1.3E-16 106.3 5.3 137 24-178 166-325 (329)
138 2cbz_A Multidrug resistance-as 99.3 1.4E-12 4.6E-17 104.1 2.4 66 2-83 10-77 (237)
139 2atv_A RERG, RAS-like estrogen 99.3 1.4E-11 4.8E-16 94.8 8.1 139 23-178 28-189 (196)
140 1mh1_A RAC1; GTP-binding, GTPa 99.3 3.7E-11 1.3E-15 91.2 10.2 138 24-177 6-177 (186)
141 3qq5_A Small GTP-binding prote 99.2 3.1E-12 1.1E-16 110.0 4.5 151 20-178 31-194 (423)
142 2ce2_X GTPase HRAS; signaling 99.2 1.8E-11 6E-16 90.9 8.1 139 24-178 4-163 (166)
143 2j1l_A RHO-related GTP-binding 99.2 1.6E-11 5.5E-16 96.1 8.0 140 23-178 34-207 (214)
144 1v43_A Sugar-binding transport 99.2 7.3E-13 2.5E-17 112.1 0.3 86 2-93 18-104 (372)
145 3r7w_A Gtpase1, GTP-binding pr 99.2 6.8E-11 2.3E-15 97.8 11.9 92 24-122 4-95 (307)
146 3reg_A RHO-like small GTPase; 99.2 5.8E-11 2E-15 91.1 10.7 139 24-178 24-186 (194)
147 2q3h_A RAS homolog gene family 99.2 1.1E-10 3.9E-15 89.9 12.2 139 24-178 21-193 (201)
148 3tui_C Methionine import ATP-b 99.2 1E-12 3.5E-17 110.6 0.6 86 2-93 31-126 (366)
149 1vg8_A RAS-related protein RAB 99.2 1.7E-11 5.8E-16 94.9 7.4 143 23-179 8-174 (207)
150 1jal_A YCHF protein; nucleotid 99.2 9.6E-12 3.3E-16 104.7 6.3 89 24-119 3-108 (363)
151 2ixe_A Antigen peptide transpo 99.2 8.9E-13 3E-17 107.2 -0.1 78 2-85 23-106 (271)
152 3zvr_A Dynamin-1; hydrolase, D 99.2 6.5E-11 2.2E-15 108.0 11.8 150 24-176 52-274 (772)
153 3cpj_B GTP-binding protein YPT 99.2 4E-12 1.4E-16 100.1 3.3 141 24-179 14-175 (223)
154 3j2k_7 ERF3, eukaryotic polype 99.2 1.9E-11 6.4E-16 106.0 7.8 138 23-172 17-217 (439)
155 2fv8_A H6, RHO-related GTP-bin 99.2 1.5E-11 5E-16 95.7 6.4 138 24-177 26-197 (207)
156 2ff7_A Alpha-hemolysin translo 99.2 5.9E-13 2E-17 106.9 -1.7 77 2-85 14-96 (247)
157 2elf_A Protein translation elo 99.2 1E-11 3.5E-16 105.2 5.8 131 25-178 23-178 (370)
158 2ohf_A Protein OLA1, GTP-bindi 99.2 2.1E-11 7.3E-16 103.6 7.7 95 17-119 18-128 (396)
159 2p67_A LAO/AO transport system 99.2 2E-10 6.9E-15 96.3 13.3 39 6-46 41-79 (341)
160 2gf0_A GTP-binding protein DI- 99.2 4.7E-11 1.6E-15 91.8 8.6 139 24-178 9-169 (199)
161 3tr5_A RF-3, peptide chain rel 99.2 2.6E-11 8.9E-16 107.2 8.0 92 24-127 14-125 (528)
162 2qag_C Septin-7; cell cycle, c 99.2 2.1E-10 7.2E-15 98.5 13.4 118 1-126 17-158 (418)
163 2iwr_A Centaurin gamma 1; ANK 99.2 2.6E-11 8.9E-16 91.6 6.9 133 24-178 8-167 (178)
164 2zu0_C Probable ATP-dependent 99.2 1E-12 3.5E-17 106.6 -1.1 85 2-92 27-117 (267)
165 3d31_A Sulfate/molybdate ABC t 99.2 1.1E-12 3.7E-17 110.1 -1.1 87 1-94 7-94 (348)
166 3bwd_D RAC-like GTP-binding pr 99.2 3.3E-11 1.1E-15 91.2 7.2 139 24-177 9-178 (182)
167 2qnr_A Septin-2, protein NEDD5 99.2 1.1E-10 3.6E-15 96.4 10.8 169 1-178 4-212 (301)
168 2j0v_A RAC-like GTP-binding pr 99.2 8.1E-11 2.8E-15 91.6 9.6 139 24-178 10-178 (212)
169 2gco_A H9, RHO-related GTP-bin 99.2 1.7E-11 5.9E-16 94.8 5.7 139 23-177 25-197 (201)
170 3p32_A Probable GTPase RV1496/ 99.2 1.6E-10 5.6E-15 97.4 11.9 95 71-180 170-284 (355)
171 2yz2_A Putative ABC transporte 99.2 1.6E-12 5.5E-17 105.5 -0.5 47 2-50 9-60 (266)
172 3t34_A Dynamin-related protein 99.2 1.9E-10 6.7E-15 97.1 12.1 103 9-118 25-183 (360)
173 1s0u_A EIF-2-gamma, translatio 99.2 1.1E-10 3.8E-15 100.2 10.7 142 23-176 8-194 (408)
174 1m7b_A RND3/RHOE small GTP-bin 99.2 7E-11 2.4E-15 90.0 8.2 139 23-177 7-180 (184)
175 3ihw_A Centg3; RAS, centaurin, 99.2 1.8E-10 6E-15 88.0 9.7 136 22-179 19-179 (184)
176 3l0i_B RAS-related protein RAB 99.2 8.7E-13 3E-17 102.0 -3.5 140 23-177 33-193 (199)
177 3izy_P Translation initiation 99.1 1.5E-12 5.2E-17 114.9 -2.4 140 24-177 5-165 (537)
178 3nh6_A ATP-binding cassette SU 99.1 1.3E-12 4.4E-17 107.8 -2.7 77 2-85 60-141 (306)
179 2ihy_A ABC transporter, ATP-bi 99.1 5.6E-12 1.9E-16 102.8 0.9 48 2-51 28-75 (279)
180 3c5c_A RAS-like protein 12; GD 99.1 1.7E-10 5.9E-15 88.2 9.2 138 24-178 22-184 (187)
181 2bbs_A Cystic fibrosis transme 99.1 1.3E-11 4.4E-16 101.2 2.9 69 7-92 50-118 (290)
182 1gwn_A RHO-related GTP-binding 99.1 1E-10 3.6E-15 90.9 7.9 139 23-177 28-201 (205)
183 3sjy_A Translation initiation 99.1 3.8E-10 1.3E-14 96.7 12.1 143 23-177 8-189 (403)
184 2ghi_A Transport protein; mult 99.1 4.3E-12 1.5E-16 102.6 -0.1 77 2-85 24-106 (260)
185 1wxq_A GTP-binding protein; st 99.1 5.7E-11 1.9E-15 101.5 6.8 90 25-120 2-114 (397)
186 1kk1_A EIF2gamma; initiation o 99.1 9.5E-10 3.2E-14 94.4 14.3 141 24-176 11-196 (410)
187 3gfo_A Cobalt import ATP-bindi 99.1 9E-12 3.1E-16 101.4 1.5 46 2-49 14-60 (275)
188 2dby_A GTP-binding protein; GD 99.1 8.8E-11 3E-15 99.3 7.5 90 24-119 2-111 (368)
189 3th5_A RAS-related C3 botulinu 98.7 5.7E-12 1.9E-16 97.7 0.0 139 23-176 30-201 (204)
190 2atx_A Small GTP binding prote 99.1 1.8E-10 6.3E-15 88.2 8.5 138 24-177 19-190 (194)
191 1d2e_A Elongation factor TU (E 99.1 8.1E-10 2.8E-14 94.5 13.3 92 24-127 4-109 (397)
192 3q3j_B RHO-related GTP-binding 99.1 2.5E-10 8.4E-15 89.3 9.2 140 24-179 28-202 (214)
193 3p26_A Elongation factor 1 alp 99.1 5.7E-11 1.9E-15 104.2 5.9 86 23-120 33-147 (483)
194 2g3y_A GTP-binding protein GEM 99.1 4.2E-10 1.4E-14 88.1 10.1 142 24-178 38-201 (211)
195 3sop_A Neuronal-specific septi 99.1 7.7E-10 2.6E-14 89.8 11.8 102 24-125 3-130 (270)
196 3llu_A RAS-related GTP-binding 99.1 1.1E-10 3.9E-15 89.8 6.3 143 23-176 20-193 (196)
197 2d2e_A SUFC protein; ABC-ATPas 99.1 1.1E-11 3.9E-16 99.6 0.6 43 2-46 10-52 (250)
198 2qag_A Septin-2, protein NEDD5 99.1 1.1E-09 3.9E-14 92.4 13.0 106 21-126 35-165 (361)
199 2c78_A Elongation factor TU-A; 99.1 5.2E-10 1.8E-14 96.0 10.7 92 24-127 12-118 (405)
200 3cbq_A GTP-binding protein REM 99.1 3.4E-10 1.2E-14 87.2 8.4 142 23-178 23-186 (195)
201 2wkq_A NPH1-1, RAS-related C3 99.1 1.9E-10 6.7E-15 95.4 7.3 138 24-177 156-327 (332)
202 3gj0_A GTP-binding nuclear pro 99.1 7E-12 2.4E-16 98.4 -1.6 142 23-178 15-173 (221)
203 2zej_A Dardarin, leucine-rich 99.1 4E-10 1.4E-14 85.9 7.9 143 24-178 3-176 (184)
204 2qi9_C Vitamin B12 import ATP- 99.0 1.6E-11 5.4E-16 98.6 -0.4 75 9-91 14-92 (249)
205 1puj_A YLQF, conserved hypothe 99.0 3.8E-10 1.3E-14 92.2 7.7 62 24-90 121-182 (282)
206 3gd7_A Fusion complex of cysti 99.0 1.5E-11 5.2E-16 104.6 -0.8 79 2-85 26-107 (390)
207 4dkx_A RAS-related protein RAB 99.0 1.1E-10 3.6E-15 91.8 3.8 139 24-178 14-174 (216)
208 2dy1_A Elongation factor G; tr 99.0 9E-10 3.1E-14 100.0 10.3 98 16-127 4-117 (665)
209 2f9l_A RAB11B, member RAS onco 99.0 5.9E-10 2E-14 85.9 7.7 140 24-178 6-166 (199)
210 1htw_A HI0065; nucleotide-bind 99.0 3.2E-11 1.1E-15 90.1 0.5 80 3-93 15-95 (158)
211 2onk_A Molybdate/tungstate ABC 99.0 2.2E-11 7.6E-16 97.2 -0.6 82 2-92 8-90 (240)
212 3b5x_A Lipid A export ATP-bind 99.0 6.2E-11 2.1E-15 106.2 2.2 78 2-85 348-430 (582)
213 1oix_A RAS-related protein RAB 99.0 2.8E-10 9.7E-15 87.4 5.5 138 24-176 30-188 (191)
214 3ec1_A YQEH GTPase; atnos1, at 99.0 2E-10 6.7E-15 97.4 4.8 89 24-118 163-256 (369)
215 1zun_B Sulfate adenylate trans 99.0 1.6E-09 5.6E-14 93.6 10.6 91 24-126 25-146 (434)
216 2ywe_A GTP-binding protein LEP 99.0 1E-09 3.5E-14 98.1 9.5 142 24-177 7-181 (600)
217 1g7s_A Translation initiation 99.0 3.8E-10 1.3E-14 101.0 6.5 91 24-127 6-113 (594)
218 1f5n_A Interferon-induced guan 99.0 9.8E-10 3.3E-14 97.9 9.0 63 22-87 37-105 (592)
219 2pjz_A Hypothetical protein ST 99.0 5.2E-11 1.8E-15 96.3 0.5 47 2-52 8-58 (263)
220 3h2y_A GTPase family protein; 99.0 3.7E-10 1.3E-14 95.6 5.5 89 24-118 161-255 (368)
221 3qf4_B Uncharacterized ABC tra 99.0 1E-10 3.4E-15 105.2 1.2 77 2-85 361-442 (598)
222 3cb4_D GTP-binding protein LEP 99.0 1.3E-09 4.3E-14 97.6 8.2 142 24-177 5-179 (599)
223 3b60_A Lipid A export ATP-bind 99.0 6.7E-11 2.3E-15 106.0 -0.4 78 2-86 348-431 (582)
224 1zo1_I IF2, translation initia 98.9 6.2E-12 2.1E-16 110.1 -6.9 137 24-175 5-162 (501)
225 2fh5_B SR-beta, signal recogni 98.9 2.9E-09 1E-13 82.8 8.8 81 24-119 8-90 (214)
226 3dpu_A RAB family protein; roc 98.9 4.6E-10 1.6E-14 99.6 4.2 144 24-180 42-208 (535)
227 2cjw_A GTP-binding protein GEM 98.9 2.2E-09 7.5E-14 82.4 7.5 142 24-178 7-170 (192)
228 3izq_1 HBS1P, elongation facto 98.9 2.8E-09 9.4E-14 95.9 9.2 85 23-119 167-280 (611)
229 4a82_A Cystic fibrosis transme 98.9 6.5E-11 2.2E-15 106.0 -1.5 78 2-86 346-429 (578)
230 2yl4_A ATP-binding cassette SU 98.9 8.9E-11 3E-15 105.5 -1.4 77 2-85 348-431 (595)
231 2qpt_A EH domain-containing pr 98.9 1.6E-09 5.6E-14 96.2 6.7 26 24-49 66-91 (550)
232 3qf4_A ABC transporter, ATP-bi 98.9 8.3E-11 2.9E-15 105.4 -1.6 77 2-85 348-430 (587)
233 3mca_A HBS1, elongation factor 98.9 6.9E-12 2.4E-16 112.4 -8.7 85 23-119 177-290 (592)
234 2ged_A SR-beta, signal recogni 98.9 6.5E-10 2.2E-14 85.0 3.6 80 24-118 49-129 (193)
235 1dar_A EF-G, elongation factor 98.9 9.2E-09 3.2E-13 93.8 11.3 93 23-127 12-120 (691)
236 3avx_A Elongation factor TS, e 98.9 1.7E-08 5.8E-13 95.4 13.1 91 23-125 296-400 (1289)
237 1tq4_A IIGP1, interferon-induc 98.9 4.8E-10 1.6E-14 96.0 2.1 75 8-85 36-132 (413)
238 1nrj_B SR-beta, signal recogni 98.9 3E-09 1E-13 82.9 6.5 82 23-118 12-93 (218)
239 1t9h_A YLOQ, probable GTPase E 98.8 9.4E-10 3.2E-14 90.6 2.4 63 16-85 168-236 (307)
240 1yqt_A RNAse L inhibitor; ATP- 98.8 1.5E-09 5.1E-14 96.3 3.7 49 1-52 27-76 (538)
241 3cnl_A YLQF, putative uncharac 98.8 4.3E-09 1.5E-13 85.0 5.2 60 24-88 100-159 (262)
242 2h5e_A Peptide chain release f 98.8 1.6E-08 5.3E-13 89.5 8.8 92 24-127 14-125 (529)
243 3szr_A Interferon-induced GTP- 98.8 2.5E-07 8.6E-12 83.2 16.7 43 164-206 292-334 (608)
244 2v9p_A Replication protein E1; 98.8 4.9E-10 1.7E-14 92.2 -0.9 42 3-47 109-150 (305)
245 1z6g_A Guanylate kinase; struc 98.8 2E-09 6.7E-14 84.6 2.6 40 6-47 8-47 (218)
246 1jny_A EF-1-alpha, elongation 98.8 1.1E-08 3.7E-13 88.5 7.4 85 24-120 7-120 (435)
247 3bk7_A ABC transporter ATP-bin 98.8 3.3E-09 1.1E-13 95.2 3.6 48 2-52 98-146 (607)
248 2jeo_A Uridine-cytidine kinase 98.7 3.5E-09 1.2E-13 84.6 3.2 40 6-47 10-49 (245)
249 2xex_A Elongation factor G; GT 98.7 1.5E-08 5.1E-13 92.4 7.7 93 23-127 10-118 (693)
250 1f60_A Elongation factor EEF1A 98.7 3E-08 1E-12 86.3 8.8 85 24-120 8-121 (458)
251 3bk7_A ABC transporter ATP-bin 98.7 6.7E-09 2.3E-13 93.2 4.1 70 3-89 365-434 (607)
252 3g5u_A MCG1178, multidrug resi 98.7 1.4E-09 4.7E-14 105.3 -0.5 79 2-86 394-478 (1284)
253 2iw3_A Elongation factor 3A; a 98.7 2.1E-09 7E-14 100.5 0.4 46 2-49 678-725 (986)
254 3vqt_A RF-3, peptide chain rel 98.7 4.7E-08 1.6E-12 86.8 8.8 89 24-124 32-140 (548)
255 4f4c_A Multidrug resistance pr 98.7 1.9E-09 6.4E-14 104.6 -0.5 78 2-86 1083-1167(1321)
256 1yqt_A RNAse L inhibitor; ATP- 98.7 9.7E-09 3.3E-13 91.0 3.6 64 10-89 301-364 (538)
257 2iw3_A Elongation factor 3A; a 98.6 2.8E-09 9.6E-14 99.6 -0.2 42 2-45 442-483 (986)
258 2yv5_A YJEQ protein; hydrolase 98.6 2.4E-08 8.3E-13 82.2 5.4 58 20-84 164-227 (302)
259 3g5u_A MCG1178, multidrug resi 98.6 9.2E-09 3.2E-13 99.6 3.2 80 2-85 1037-1120(1284)
260 1u0l_A Probable GTPase ENGC; p 98.6 1.3E-08 4.4E-13 83.9 3.4 62 19-86 167-234 (301)
261 1znw_A Guanylate kinase, GMP k 98.6 1.3E-08 4.4E-13 79.2 3.0 40 5-48 6-45 (207)
262 1yrb_A ATP(GTP)binding protein 98.6 3.8E-08 1.3E-12 78.9 5.8 26 24-49 15-45 (262)
263 1r5b_A Eukaryotic peptide chai 98.6 4.1E-08 1.4E-12 85.6 6.1 86 23-120 43-157 (467)
264 4gp7_A Metallophosphoesterase; 98.6 1.4E-08 4.7E-13 76.7 2.7 31 13-45 1-31 (171)
265 3b85_A Phosphate starvation-in 98.6 1.5E-09 5E-14 84.8 -3.0 42 3-51 8-49 (208)
266 2rdo_7 EF-G, elongation factor 98.6 2.1E-07 7.3E-12 84.9 10.5 91 24-126 11-124 (704)
267 3c5h_A Glucocorticoid receptor 98.6 6.2E-08 2.1E-12 77.8 5.9 70 107-177 162-252 (255)
268 4f4c_A Multidrug resistance pr 98.6 1.9E-08 6.5E-13 97.7 3.1 78 2-85 422-505 (1321)
269 3ozx_A RNAse L inhibitor; ATP 98.6 2.4E-08 8.2E-13 88.5 3.2 37 11-49 284-320 (538)
270 2j37_W Signal recognition part 98.6 5.3E-07 1.8E-11 79.0 11.6 97 21-123 99-229 (504)
271 2obl_A ESCN; ATPase, hydrolase 98.5 9.1E-09 3.1E-13 86.3 0.2 46 1-49 51-97 (347)
272 2dpy_A FLII, flagellum-specifi 98.5 1.9E-08 6.5E-13 86.9 1.6 46 1-49 137-183 (438)
273 3j25_A Tetracycline resistance 98.5 1.1E-07 3.7E-12 86.0 6.3 92 24-127 3-110 (638)
274 2rcn_A Probable GTPase ENGC; Y 98.5 5.4E-08 1.8E-12 81.7 3.9 38 12-52 207-245 (358)
275 1n0u_A EF-2, elongation factor 98.5 1.2E-07 4.3E-12 88.1 6.4 93 24-127 20-141 (842)
276 2wsm_A Hydrogenase expression/ 98.5 2.3E-08 7.7E-13 78.1 1.1 23 24-46 31-53 (221)
277 3j16_B RLI1P; ribosome recycli 98.5 5.8E-08 2E-12 87.1 3.5 48 2-52 84-132 (608)
278 3lnc_A Guanylate kinase, GMP k 98.5 3.6E-08 1.2E-12 77.8 1.8 39 7-47 13-52 (231)
279 2gza_A Type IV secretion syste 98.4 1.7E-08 5.8E-13 85.2 -1.2 37 11-49 165-201 (361)
280 3tr0_A Guanylate kinase, GMP k 98.4 1E-07 3.5E-12 73.5 3.2 31 15-47 1-31 (205)
281 3nwj_A ATSK2; P loop, shikimat 98.4 2.2E-08 7.7E-13 80.2 -0.8 43 2-46 25-71 (250)
282 2pt7_A CAG-ALFA; ATPase, prote 98.3 3E-08 1E-12 82.7 -1.6 37 10-48 160-196 (330)
283 3ozx_A RNAse L inhibitor; ATP 98.3 3.8E-07 1.3E-11 80.7 5.1 40 10-51 13-53 (538)
284 2eyu_A Twitching motility prot 98.3 1.4E-07 4.8E-12 76.0 2.0 37 9-49 15-51 (261)
285 3b9q_A Chloroplast SRP recepto 98.3 3E-07 1E-11 75.6 3.9 37 11-49 90-126 (302)
286 3euj_A Chromosome partition pr 98.3 1.6E-07 5.5E-12 81.7 2.1 42 7-51 16-57 (483)
287 3j16_B RLI1P; ribosome recycli 98.3 2.7E-07 9.2E-12 82.8 3.4 44 9-52 361-407 (608)
288 3q5d_A Atlastin-1; G protein, 98.3 5.1E-07 1.8E-11 77.9 4.8 25 22-46 66-90 (447)
289 3ux8_A Excinuclease ABC, A sub 98.3 2E-07 6.9E-12 84.8 1.9 35 8-44 335-369 (670)
290 3vaa_A Shikimate kinase, SK; s 98.3 4.6E-07 1.6E-11 69.8 3.6 38 7-46 11-48 (199)
291 3ux8_A Excinuclease ABC, A sub 98.3 2.8E-07 9.6E-12 83.8 2.7 32 7-40 30-61 (670)
292 1zp6_A Hypothetical protein AT 98.3 6.1E-07 2.1E-11 68.3 4.0 28 17-46 5-32 (191)
293 2npi_A Protein CLP1; CLP1-PCF1 98.2 1.7E-07 5.7E-12 81.5 0.8 35 13-49 130-164 (460)
294 1lvg_A Guanylate kinase, GMP k 98.2 3.4E-07 1.2E-11 70.6 2.3 26 20-47 3-28 (198)
295 3ney_A 55 kDa erythrocyte memb 98.2 1.5E-07 5.2E-12 72.5 0.3 31 16-48 14-44 (197)
296 4fn5_A EF-G 1, elongation fact 98.2 2.3E-06 8E-11 78.2 7.9 126 24-176 14-163 (709)
297 1s96_A Guanylate kinase, GMP k 98.2 5.3E-07 1.8E-11 70.8 3.1 31 16-48 11-41 (219)
298 2yhs_A FTSY, cell division pro 98.2 6.9E-07 2.3E-11 77.8 4.0 36 11-48 283-318 (503)
299 3uie_A Adenylyl-sulfate kinase 98.2 2.8E-07 9.5E-12 71.1 1.2 45 2-48 6-50 (200)
300 1ye8_A Protein THEP1, hypothet 98.2 5.8E-07 2E-11 68.2 2.8 24 25-48 2-25 (178)
301 2og2_A Putative signal recogni 98.2 9.4E-07 3.2E-11 74.3 3.9 35 12-48 148-182 (359)
302 2v3c_C SRP54, signal recogniti 98.2 1.4E-06 4.9E-11 75.0 5.1 98 18-121 94-224 (432)
303 3a00_A Guanylate kinase, GMP k 98.2 4.8E-07 1.6E-11 68.9 1.8 25 24-48 2-26 (186)
304 2j41_A Guanylate kinase; GMP, 98.2 9.4E-07 3.2E-11 68.0 3.3 29 17-47 2-30 (207)
305 3aez_A Pantothenate kinase; tr 98.2 1.2E-06 4E-11 72.5 3.9 29 18-48 87-115 (312)
306 1tf7_A KAIC; homohexamer, hexa 98.1 4E-07 1.4E-11 80.5 0.9 42 5-48 22-66 (525)
307 3c8u_A Fructokinase; YP_612366 98.1 1E-06 3.6E-11 68.3 3.1 29 18-48 19-47 (208)
308 3asz_A Uridine kinase; cytidin 98.1 1.1E-06 3.8E-11 68.0 2.9 29 18-48 3-31 (211)
309 1cr0_A DNA primase/helicase; R 98.1 6.5E-07 2.2E-11 73.2 1.5 39 8-48 22-60 (296)
310 3r7w_B Gtpase2, GTP-binding pr 98.1 4.2E-06 1.4E-10 69.3 6.3 85 25-120 1-85 (331)
311 1lw7_A Transcriptional regulat 98.1 8.8E-07 3E-11 74.7 2.3 38 11-50 158-197 (365)
312 1kgd_A CASK, peripheral plasma 98.1 1.3E-06 4.6E-11 66.1 3.1 25 24-48 6-30 (180)
313 2oap_1 GSPE-2, type II secreti 98.1 3.4E-07 1.2E-11 80.5 -0.5 39 8-48 247-285 (511)
314 1sq5_A Pantothenate kinase; P- 98.1 4.4E-07 1.5E-11 74.8 -0.2 28 19-48 78-105 (308)
315 3dm5_A SRP54, signal recogniti 98.1 1.5E-05 5.2E-10 68.6 9.2 93 22-120 99-225 (443)
316 1j8m_F SRP54, signal recogniti 98.0 9.4E-06 3.2E-10 66.5 7.2 32 12-46 89-121 (297)
317 3kta_A Chromosome segregation 98.0 1.9E-06 6.6E-11 65.1 2.9 33 12-47 18-50 (182)
318 1p9r_A General secretion pathw 98.0 6.5E-07 2.2E-11 76.8 -0.2 35 10-48 158-192 (418)
319 4a74_A DNA repair and recombin 98.0 1.6E-06 5.4E-11 67.8 2.1 30 17-48 21-50 (231)
320 2o8b_B DNA mismatch repair pro 98.0 2.1E-06 7.3E-11 81.2 3.2 44 2-48 762-813 (1022)
321 2x8a_A Nuclear valosin-contain 98.0 7.7E-07 2.6E-11 72.2 0.0 40 5-48 30-69 (274)
322 4eun_A Thermoresistant glucoki 98.0 2.6E-06 9E-11 65.5 3.1 29 16-46 24-52 (200)
323 3thx_A DNA mismatch repair pro 98.0 1.1E-05 3.6E-10 75.7 7.6 36 6-43 647-682 (934)
324 1wb9_A DNA mismatch repair pro 98.0 2.2E-06 7.6E-11 79.1 3.0 39 6-47 593-631 (800)
325 2i3b_A HCR-ntpase, human cance 98.0 2.2E-06 7.4E-11 65.7 2.5 25 24-48 2-26 (189)
326 2ehv_A Hypothetical protein PH 98.0 3.6E-06 1.2E-10 66.6 3.7 27 17-45 26-52 (251)
327 4aby_A DNA repair protein RECN 98.0 5.6E-07 1.9E-11 77.0 -1.2 39 7-48 47-85 (415)
328 3thx_B DNA mismatch repair pro 98.0 1.8E-06 6.3E-11 80.6 2.0 39 6-46 658-696 (918)
329 1svm_A Large T antigen; AAA+ f 98.0 1.6E-06 5.3E-11 73.4 1.1 37 9-47 157-193 (377)
330 3tau_A Guanylate kinase, GMP k 97.9 4.3E-06 1.5E-10 64.8 3.3 28 19-48 6-33 (208)
331 2bbw_A Adenylate kinase 4, AK4 97.9 5.1E-06 1.7E-10 66.0 3.6 26 24-49 28-56 (246)
332 3ec2_A DNA replication protein 97.9 3.2E-06 1.1E-10 63.8 2.1 31 16-48 33-63 (180)
333 3jvv_A Twitching mobility prot 97.9 5.1E-06 1.8E-10 69.8 3.3 31 17-49 119-149 (356)
334 3kl4_A SRP54, signal recogniti 97.9 3.2E-05 1.1E-09 66.5 8.1 94 23-120 97-224 (433)
335 1ixz_A ATP-dependent metallopr 97.9 1.8E-06 6.2E-11 68.9 0.1 38 6-47 36-73 (254)
336 2bdt_A BH3686; alpha-beta prot 97.9 4.9E-06 1.7E-10 63.2 2.5 22 24-45 3-24 (189)
337 1ewq_A DNA mismatch repair pro 97.9 4.9E-06 1.7E-10 76.5 2.8 37 6-47 564-600 (765)
338 2vp4_A Deoxynucleoside kinase; 97.9 6.6E-06 2.3E-10 64.8 3.2 31 14-46 13-43 (230)
339 1rj9_A FTSY, signal recognitio 97.9 5E-06 1.7E-10 68.4 2.4 27 23-49 102-128 (304)
340 2qt1_A Nicotinamide riboside k 97.9 1.1E-05 3.8E-10 62.2 4.3 33 13-47 13-45 (207)
341 2ewv_A Twitching motility prot 97.9 6E-06 2E-10 69.8 3.0 30 17-48 132-161 (372)
342 4e22_A Cytidylate kinase; P-lo 97.8 9.3E-06 3.2E-10 64.9 3.5 29 19-49 25-56 (252)
343 1iy2_A ATP-dependent metallopr 97.8 2.5E-06 8.6E-11 69.1 0.1 38 6-47 60-97 (278)
344 2w0m_A SSO2452; RECA, SSPF, un 97.8 4.4E-06 1.5E-10 65.2 1.4 38 9-48 10-48 (235)
345 3qf7_A RAD50; ABC-ATPase, ATPa 97.8 6.4E-06 2.2E-10 69.5 2.2 32 10-44 13-44 (365)
346 3e70_C DPA, signal recognition 97.8 1E-05 3.5E-10 67.2 3.3 28 19-48 127-154 (328)
347 2ygr_A Uvrabc system protein A 97.8 5.6E-06 1.9E-10 77.4 1.6 34 9-44 656-689 (993)
348 1in4_A RUVB, holliday junction 97.8 1.3E-06 4.4E-11 72.8 -2.5 44 4-47 27-75 (334)
349 1knq_A Gluconate kinase; ALFA/ 97.8 1.2E-05 4.2E-10 60.2 3.1 26 19-46 6-31 (175)
350 1kag_A SKI, shikimate kinase I 97.8 1E-05 3.6E-10 60.3 2.6 25 24-48 5-29 (173)
351 2o5v_A DNA replication and rep 97.7 1.2E-05 4.1E-10 67.6 3.0 34 9-45 15-48 (359)
352 1f2t_A RAD50 ABC-ATPase; DNA d 97.7 1.6E-05 5.5E-10 58.3 3.3 28 14-44 17-44 (149)
353 2r6f_A Excinuclease ABC subuni 97.7 5.6E-06 1.9E-10 77.2 0.6 34 9-44 638-671 (972)
354 2kjq_A DNAA-related protein; s 97.7 1.3E-05 4.5E-10 58.8 2.5 27 20-48 35-61 (149)
355 1y63_A LMAJ004144AAA protein; 97.7 2.4E-05 8.2E-10 59.3 3.9 32 13-46 2-33 (184)
356 3tqc_A Pantothenate kinase; bi 97.7 2.4E-05 8.2E-10 64.7 3.6 27 22-48 91-117 (321)
357 2vf7_A UVRA2, excinuclease ABC 97.7 3.7E-06 1.3E-10 77.9 -1.7 36 9-46 511-547 (842)
358 1rz3_A Hypothetical protein rb 97.6 2.8E-05 9.4E-10 59.8 3.3 29 18-48 19-47 (201)
359 2xxa_A Signal recognition part 97.6 0.00012 4.2E-09 63.0 7.7 97 20-121 97-227 (433)
360 3pih_A Uvrabc system protein A 97.6 2.1E-05 7.1E-10 73.5 2.8 31 8-40 597-627 (916)
361 2f1r_A Molybdopterin-guanine d 97.6 9.9E-06 3.4E-10 60.9 0.5 26 24-49 3-28 (171)
362 1jjv_A Dephospho-COA kinase; P 97.6 3.5E-05 1.2E-09 59.3 3.6 23 24-46 3-25 (206)
363 1ex7_A Guanylate kinase; subst 97.6 1.3E-05 4.5E-10 61.1 1.1 23 25-47 3-25 (186)
364 1nij_A Hypothetical protein YJ 97.6 4.1E-05 1.4E-09 63.3 4.0 24 24-47 5-28 (318)
365 2qor_A Guanylate kinase; phosp 97.6 3.7E-05 1.3E-09 59.2 3.5 28 18-47 9-36 (204)
366 1cke_A CK, MSSA, protein (cyti 97.6 3E-05 1E-09 60.4 2.9 24 24-47 6-29 (227)
367 1zu4_A FTSY; GTPase, signal re 97.5 5.1E-05 1.7E-09 62.8 3.9 34 12-47 96-129 (320)
368 4eaq_A DTMP kinase, thymidylat 97.5 5.8E-05 2E-09 59.4 4.0 37 10-48 12-51 (229)
369 1e69_A Chromosome segregation 97.5 4.4E-05 1.5E-09 63.2 3.0 30 13-45 17-46 (322)
370 3qks_A DNA double-strand break 97.5 5.3E-05 1.8E-09 58.5 3.3 28 14-44 17-44 (203)
371 2if2_A Dephospho-COA kinase; a 97.5 4.6E-05 1.6E-09 58.4 2.5 22 24-45 2-23 (204)
372 2cvh_A DNA repair and recombin 97.5 5.6E-05 1.9E-09 58.4 3.0 34 10-45 8-42 (220)
373 1n0w_A DNA repair protein RAD5 97.5 4.2E-05 1.4E-09 60.1 2.3 29 16-46 19-47 (243)
374 4ido_A Atlastin-1; GTPase, GTP 97.4 0.00065 2.2E-08 58.5 9.3 25 20-44 64-88 (457)
375 1ls1_A Signal recognition part 97.4 5.1E-05 1.8E-09 62.0 2.2 33 12-48 91-123 (295)
376 1ly1_A Polynucleotide kinase; 97.4 0.0001 3.5E-09 55.0 3.7 23 23-45 2-24 (181)
377 2pez_A Bifunctional 3'-phospho 97.4 8.3E-05 2.8E-09 55.8 3.2 24 24-47 6-29 (179)
378 1np6_A Molybdopterin-guanine d 97.4 7.9E-05 2.7E-09 56.1 3.0 24 24-47 7-30 (174)
379 1qhl_A Protein (cell division 97.4 8E-06 2.7E-10 64.3 -2.6 26 24-49 28-53 (227)
380 1vma_A Cell division protein F 97.4 9.8E-05 3.3E-09 60.7 3.8 33 14-48 97-129 (306)
381 1odf_A YGR205W, hypothetical 3 97.4 9.1E-05 3.1E-09 60.4 3.5 27 22-48 30-56 (290)
382 3t61_A Gluconokinase; PSI-biol 97.4 8.1E-05 2.8E-09 57.0 2.9 23 24-46 19-41 (202)
383 1w1w_A Structural maintenance 97.3 8.5E-05 2.9E-09 63.9 3.0 31 16-48 21-51 (430)
384 3kb2_A SPBC2 prophage-derived 97.3 0.00012 3.9E-09 54.3 3.3 23 24-46 2-24 (173)
385 2dhr_A FTSH; AAA+ protein, hex 97.3 7.6E-05 2.6E-09 65.4 2.5 38 6-47 51-88 (499)
386 3lw7_A Adenylate kinase relate 97.3 0.00012 4.2E-09 54.1 3.2 20 24-43 2-21 (179)
387 2yvu_A Probable adenylyl-sulfa 97.3 0.00018 6.1E-09 54.3 4.2 29 17-47 9-37 (186)
388 3cm0_A Adenylate kinase; ATP-b 97.3 0.00012 4.2E-09 55.1 3.2 22 24-45 5-26 (186)
389 3qkt_A DNA double-strand break 97.3 7.7E-05 2.6E-09 62.1 2.2 26 16-44 19-44 (339)
390 3cr8_A Sulfate adenylyltranfer 97.3 5.5E-05 1.9E-09 67.1 1.3 30 17-48 365-394 (552)
391 1nlf_A Regulatory protein REPA 97.3 7.4E-05 2.5E-09 60.4 2.0 29 17-47 26-54 (279)
392 1pzn_A RAD51, DNA repair and r 97.3 8E-05 2.7E-09 62.4 2.1 31 15-47 125-155 (349)
393 1qhx_A CPT, protein (chloramph 97.3 0.00016 5.6E-09 53.9 3.6 24 24-47 4-27 (178)
394 2ga8_A Hypothetical 39.9 kDa p 97.3 6.3E-05 2.2E-09 62.8 1.4 38 10-47 11-48 (359)
395 2rhm_A Putative kinase; P-loop 97.2 0.00022 7.4E-09 53.9 3.7 22 24-45 6-27 (193)
396 2hf9_A Probable hydrogenase ni 97.2 0.00019 6.4E-09 55.7 3.4 24 23-46 38-61 (226)
397 1m7g_A Adenylylsulfate kinase; 97.2 0.00019 6.3E-09 55.5 3.4 30 16-47 20-49 (211)
398 3k1j_A LON protease, ATP-depen 97.2 3.5E-05 1.2E-09 69.2 -1.0 42 5-48 44-85 (604)
399 1kht_A Adenylate kinase; phosp 97.2 0.00022 7.5E-09 53.7 3.5 23 24-46 4-26 (192)
400 2px0_A Flagellar biosynthesis 97.2 0.00017 6E-09 58.9 2.9 25 24-48 106-130 (296)
401 3iij_A Coilin-interacting nucl 97.2 0.00026 8.9E-09 53.1 3.6 22 24-45 12-33 (180)
402 2jaq_A Deoxyguanosine kinase; 97.2 0.00023 7.8E-09 54.2 3.3 22 25-46 2-23 (205)
403 1sxj_C Activator 1 40 kDa subu 97.2 3.9E-05 1.3E-09 63.8 -1.2 43 5-47 28-70 (340)
404 3trf_A Shikimate kinase, SK; a 97.1 0.00026 8.9E-09 53.2 3.4 23 24-46 6-28 (185)
405 1tev_A UMP-CMP kinase; ploop, 97.1 0.00029 9.8E-09 53.2 3.6 22 24-45 4-25 (196)
406 1lv7_A FTSH; alpha/beta domain 97.1 0.00023 8E-09 56.6 2.9 23 25-47 47-69 (257)
407 2v54_A DTMP kinase, thymidylat 97.1 0.00035 1.2E-08 53.2 3.8 24 24-47 5-28 (204)
408 3ice_A Transcription terminati 97.1 0.00031 1.1E-08 59.3 3.7 33 13-47 166-198 (422)
409 1uf9_A TT1252 protein; P-loop, 97.1 0.00033 1.1E-08 53.3 3.6 25 22-46 7-31 (203)
410 1jbk_A CLPB protein; beta barr 97.1 0.00045 1.5E-08 51.5 4.2 24 24-47 44-67 (195)
411 1nks_A Adenylate kinase; therm 97.1 0.00031 1.1E-08 52.9 3.3 24 24-47 2-25 (194)
412 2plr_A DTMP kinase, probable t 97.1 0.00036 1.2E-08 53.4 3.8 23 24-46 5-27 (213)
413 2p5t_B PEZT; postsegregational 97.1 0.00024 8.1E-09 56.6 2.7 23 24-46 33-55 (253)
414 2c95_A Adenylate kinase 1; tra 97.0 0.00037 1.3E-08 52.7 3.5 22 24-45 10-31 (196)
415 1vht_A Dephospho-COA kinase; s 97.0 0.0004 1.4E-08 53.8 3.7 22 24-45 5-26 (218)
416 3m6a_A ATP-dependent protease 97.0 4.3E-05 1.5E-09 67.7 -2.1 36 10-48 98-133 (543)
417 1ukz_A Uridylate kinase; trans 97.0 0.00054 1.8E-08 52.3 4.3 25 22-46 14-38 (203)
418 1via_A Shikimate kinase; struc 97.0 0.00033 1.1E-08 52.3 2.9 23 24-46 5-27 (175)
419 1tf7_A KAIC; homohexamer, hexa 97.0 0.00023 8E-09 62.7 2.4 32 15-48 275-306 (525)
420 1nn5_A Similar to deoxythymidy 97.0 0.00044 1.5E-08 53.1 3.5 23 24-46 10-32 (215)
421 2wwf_A Thymidilate kinase, put 97.0 0.00044 1.5E-08 53.0 3.5 23 24-46 11-33 (212)
422 4ad8_A DNA repair protein RECN 97.0 0.00013 4.5E-09 64.2 0.4 33 9-44 49-81 (517)
423 1gvn_B Zeta; postsegregational 97.0 0.00041 1.4E-08 56.4 3.3 23 23-45 33-55 (287)
424 1xjc_A MOBB protein homolog; s 97.0 0.00049 1.7E-08 51.5 3.5 23 24-46 5-27 (169)
425 2ze6_A Isopentenyl transferase 97.0 0.00044 1.5E-08 55.1 3.5 23 24-46 2-24 (253)
426 3fb4_A Adenylate kinase; psych 97.0 0.00043 1.5E-08 53.4 3.3 21 25-45 2-22 (216)
427 1aky_A Adenylate kinase; ATP:A 97.0 0.00049 1.7E-08 53.4 3.6 23 24-46 5-27 (220)
428 2bwj_A Adenylate kinase 5; pho 97.0 0.00043 1.5E-08 52.5 3.2 23 24-46 13-35 (199)
429 2cdn_A Adenylate kinase; phosp 97.0 0.0005 1.7E-08 52.5 3.6 23 23-45 20-42 (201)
430 3r20_A Cytidylate kinase; stru 97.0 0.00048 1.6E-08 54.3 3.5 22 24-45 10-31 (233)
431 1q3t_A Cytidylate kinase; nucl 97.0 0.00053 1.8E-08 53.9 3.8 26 18-45 13-38 (236)
432 1qf9_A UMP/CMP kinase, protein 96.9 0.00051 1.7E-08 51.7 3.4 22 24-45 7-28 (194)
433 1zd8_A GTP:AMP phosphotransfer 96.9 0.00045 1.6E-08 53.9 3.2 22 24-45 8-29 (227)
434 3auy_A DNA double-strand break 96.9 0.00028 9.4E-09 59.5 2.0 29 13-44 18-46 (371)
435 1zak_A Adenylate kinase; ATP:A 96.9 0.00042 1.4E-08 53.8 2.9 23 24-46 6-28 (222)
436 2ffh_A Protein (FFH); SRP54, s 96.9 0.0003 1E-08 60.3 2.2 32 12-47 91-122 (425)
437 3dl0_A Adenylate kinase; phosp 96.9 0.00049 1.7E-08 53.1 3.3 21 25-45 2-22 (216)
438 3tlx_A Adenylate kinase 2; str 96.9 0.00057 1.9E-08 54.1 3.7 22 24-45 30-51 (243)
439 2iyv_A Shikimate kinase, SK; t 96.9 0.00043 1.5E-08 52.0 2.8 22 24-45 3-24 (184)
440 1gtv_A TMK, thymidylate kinase 96.9 0.00019 6.4E-09 55.3 0.8 23 25-47 2-24 (214)
441 2vli_A Antibiotic resistance p 96.9 0.00043 1.5E-08 51.8 2.6 23 24-46 6-28 (183)
442 2z0h_A DTMP kinase, thymidylat 96.9 0.00062 2.1E-08 51.5 3.3 22 25-46 2-23 (197)
443 3a4m_A L-seryl-tRNA(SEC) kinas 96.9 0.00069 2.4E-08 54.1 3.7 22 24-45 5-26 (260)
444 1e6c_A Shikimate kinase; phosp 96.9 0.00061 2.1E-08 50.4 3.2 23 24-46 3-25 (173)
445 2dr3_A UPF0273 protein PH0284; 96.9 0.00031 1.1E-08 55.1 1.6 29 15-45 17-45 (247)
446 2pbr_A DTMP kinase, thymidylat 96.8 0.00067 2.3E-08 51.1 3.3 22 25-46 2-23 (195)
447 2pt5_A Shikimate kinase, SK; a 96.8 0.00071 2.4E-08 49.9 3.3 21 25-45 2-22 (168)
448 1sxj_E Activator 1 40 kDa subu 96.8 0.00027 9.2E-09 58.8 0.7 23 24-46 37-59 (354)
449 2f6r_A COA synthase, bifunctio 96.8 0.001 3.5E-08 53.8 4.1 25 20-44 72-96 (281)
450 1e4v_A Adenylate kinase; trans 96.7 0.00077 2.7E-08 52.0 3.1 21 25-45 2-22 (214)
451 2xb4_A Adenylate kinase; ATP-b 96.7 0.00086 2.9E-08 52.2 3.3 21 25-45 2-22 (223)
452 3lda_A DNA repair protein RAD5 96.7 0.00061 2.1E-08 58.0 2.6 30 17-48 174-205 (400)
453 1zuh_A Shikimate kinase; alpha 96.7 0.00097 3.3E-08 49.3 3.4 23 24-46 8-30 (168)
454 1ltq_A Polynucleotide kinase; 96.7 0.0011 3.7E-08 53.9 3.7 23 23-45 2-24 (301)
455 2ce7_A Cell division protein F 96.7 0.00037 1.3E-08 60.6 1.0 34 10-47 40-73 (476)
456 3umf_A Adenylate kinase; rossm 96.7 0.0014 4.8E-08 51.0 4.2 24 24-47 30-53 (217)
457 1uj2_A Uridine-cytidine kinase 96.7 0.0012 4E-08 52.4 3.7 25 22-46 21-45 (252)
458 3be4_A Adenylate kinase; malar 96.7 0.00097 3.3E-08 51.6 3.1 22 24-45 6-27 (217)
459 3cf0_A Transitional endoplasmi 96.7 0.00091 3.1E-08 54.6 3.0 28 18-47 46-73 (301)
460 1ak2_A Adenylate kinase isoenz 96.7 0.0012 4.2E-08 51.7 3.6 23 24-46 17-39 (233)
461 3ake_A Cytidylate kinase; CMP 96.6 0.0012 4.2E-08 50.3 3.5 23 24-46 3-25 (208)
462 1ypw_A Transitional endoplasmi 96.6 0.00097 3.3E-08 61.8 3.3 30 17-48 234-263 (806)
463 3a8t_A Adenylate isopentenyltr 96.6 0.0042 1.4E-07 51.5 6.8 25 24-48 41-65 (339)
464 3sr0_A Adenylate kinase; phosp 96.6 0.0012 4.1E-08 51.0 3.3 23 25-47 2-24 (206)
465 4b4t_L 26S protease subunit RP 96.6 0.0037 1.3E-07 53.7 6.7 24 24-47 216-239 (437)
466 4b4t_J 26S protease regulatory 96.6 0.002 6.7E-08 54.8 4.8 24 25-48 184-207 (405)
467 2grj_A Dephospho-COA kinase; T 96.6 0.0012 4.3E-08 50.3 3.3 23 24-46 13-35 (192)
468 3zvl_A Bifunctional polynucleo 96.6 0.0019 6.6E-08 55.2 4.6 27 21-47 256-282 (416)
469 4b4t_K 26S protease regulatory 96.5 0.0046 1.6E-07 53.0 6.5 24 24-47 207-230 (428)
470 2w58_A DNAI, primosome compone 96.5 0.0017 5.9E-08 49.4 3.4 25 24-48 55-79 (202)
471 1sxj_D Activator 1 41 kDa subu 96.5 0.00093 3.2E-08 55.3 1.9 41 7-47 42-82 (353)
472 4b4t_M 26S protease regulatory 96.4 0.004 1.4E-07 53.5 5.8 25 24-48 216-240 (434)
473 3bos_A Putative DNA replicatio 96.4 0.0022 7.4E-08 49.8 3.5 24 24-47 53-76 (242)
474 2vf7_A UVRA2, excinuclease ABC 96.4 0.0012 4.1E-08 61.2 2.2 31 9-41 24-54 (842)
475 2ius_A DNA translocase FTSK; n 96.4 0.0011 3.8E-08 58.0 1.9 30 14-45 160-189 (512)
476 3v9p_A DTMP kinase, thymidylat 96.3 0.0021 7.1E-08 50.4 2.9 27 19-47 23-49 (227)
477 3b9p_A CG5977-PA, isoform A; A 96.3 0.0019 6.6E-08 52.2 2.9 24 24-47 55-78 (297)
478 3crm_A TRNA delta(2)-isopenten 96.3 0.0027 9.2E-08 52.4 3.7 24 24-47 6-29 (323)
479 3d3q_A TRNA delta(2)-isopenten 96.2 0.0029 1E-07 52.5 3.7 24 24-47 8-31 (340)
480 3cf2_A TER ATPase, transitiona 96.2 0.01 3.5E-07 54.8 7.6 25 24-48 239-263 (806)
481 3h4m_A Proteasome-activating n 96.2 0.003 1E-07 50.7 3.6 24 24-47 52-75 (285)
482 4b4t_I 26S protease regulatory 96.2 0.0082 2.8E-07 51.3 6.4 25 24-48 217-241 (437)
483 1qvr_A CLPB protein; coiled co 96.2 0.0041 1.4E-07 58.0 5.0 24 24-47 192-215 (854)
484 4ag6_A VIRB4 ATPase, type IV s 96.2 0.0025 8.6E-08 53.9 3.2 25 24-48 36-60 (392)
485 3hr8_A Protein RECA; alpha and 96.2 0.0022 7.4E-08 53.7 2.7 27 18-46 58-84 (356)
486 2p65_A Hypothetical protein PF 96.2 0.0024 8.2E-08 47.4 2.6 24 24-47 44-67 (187)
487 1a7j_A Phosphoribulokinase; tr 96.2 0.0016 5.6E-08 52.9 1.8 23 24-46 6-28 (290)
488 3foz_A TRNA delta(2)-isopenten 96.2 0.0035 1.2E-07 51.4 3.7 24 24-47 11-34 (316)
489 4edh_A DTMP kinase, thymidylat 96.2 0.0038 1.3E-07 48.4 3.7 26 20-47 5-30 (213)
490 1tue_A Replication protein E1; 96.2 0.0029 9.9E-08 48.7 2.9 23 24-46 59-81 (212)
491 3exa_A TRNA delta(2)-isopenten 96.2 0.0036 1.2E-07 51.4 3.7 24 24-47 4-27 (322)
492 2qmh_A HPR kinase/phosphorylas 96.1 0.0039 1.3E-07 47.7 3.7 24 24-47 35-58 (205)
493 4b4t_H 26S protease regulatory 96.1 0.008 2.7E-07 51.8 6.0 25 24-48 244-268 (467)
494 2ocp_A DGK, deoxyguanosine kin 96.1 0.0036 1.2E-07 49.2 3.5 24 24-47 3-26 (241)
495 3pih_A Uvrabc system protein A 96.1 0.0018 6.2E-08 60.6 2.0 34 8-43 11-45 (916)
496 2r6f_A Excinuclease ABC subuni 96.1 0.0019 6.4E-08 60.5 2.1 30 9-40 32-61 (972)
497 2ygr_A Uvrabc system protein A 96.1 0.0018 6.3E-08 60.7 2.0 30 9-40 34-63 (993)
498 2h92_A Cytidylate kinase; ross 96.1 0.0031 1.1E-07 48.5 3.0 23 24-46 4-26 (219)
499 3lv8_A DTMP kinase, thymidylat 96.1 0.0037 1.3E-07 49.3 3.3 24 24-47 28-51 (236)
500 3gmt_A Adenylate kinase; ssgci 96.1 0.0038 1.3E-07 48.9 3.3 23 24-46 9-31 (230)
No 1
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.71 E-value=3.1e-16 Score=126.80 Aligned_cols=155 Identities=24% Similarity=0.386 Sum_probs=103.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053 23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG 102 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~ 102 (231)
..+|+|+|++|||||||+|.|+|...+.......++|.........+ .+..+.++||||+.+...........+...+.
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~ 100 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW-GNREIVIIDTPDMFSWKDHCEALYKEVQRCYL 100 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEE-TTEEEEEEECCGGGGSSCCCHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEe-CCCEEEEEECcCCCCCCCCHHHHHHHHHHHHH
Confidence 37999999999999999999999876554322223566555555555 78889999999998755444444455566666
Q ss_pred hhcCCccEEEEEEECCCCCCHHHHH----hcC------CCCcHHHHHH-HHHhhH---HH------------HHhhcc--
Q 038053 103 LAKGGIHAVLVVFSVRSRFSQEEEA----ANG------GQPYTDEFLA-ELKRGA---TE------------LRDQQA-- 154 (231)
Q Consensus 103 ~~~~~~~~il~vvd~~~~~~~~~~~----~~~------~~~~~~~~~~-~~~~~~---~~------------l~~~~~-- 154 (231)
..+..+|++++|+|++ ++...+.. ... ..+.+ .+++ +++... .. +...+.
T Consensus 101 ~~~~~~d~il~V~d~~-~~~~~~~~~~~~l~~~~~~~~~~~~i-~vv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~ 178 (260)
T 2xtp_A 101 LSAPGPHVLLLVTQLG-RYTSQDQQAAQRVKEIFGEDAMGHTI-VLFTHKEDLNGGSLMDYMHDSDNKALSKLVAACGGR 178 (260)
T ss_dssp HHTTCCSEEEEEEETT-CCCHHHHHHHHHHHHHHCGGGGGGEE-EEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTC
T ss_pred hcCCCCcEEEEEEeCC-CCCHHHHHHHHHHHHHhCchhhccEE-EEEEcccccCCccHHHHHHhcchHHHHHHHHHhCCe
Confidence 6778999999999998 57766543 000 22332 2333 443211 01 111111
Q ss_pred --ch--hhhhhhhHhhHHHHHHHHHHHHHH
Q 038053 155 --EV--DSLKEYSKQEISKLMGQMQESYED 180 (231)
Q Consensus 155 --~i--~~is~~~~~~i~~l~~~i~~~~~~ 180 (231)
+. +.+||.++.|+++++..+......
T Consensus 179 ~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 179 ICAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 12 678999999999999998876654
No 2
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.70 E-value=3.3e-16 Score=125.13 Aligned_cols=102 Identities=42% Similarity=0.716 Sum_probs=73.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 22 GKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 22 ~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
...+|+|+|++|+|||||+|+|+|...+..+....++|..+......+ .+..+.++||||+++...........+...+
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~ 106 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW-KETELVVVDTPGIFDTEVPNAETSKEIIRCI 106 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEE-TTEEEEEEECCSCC-----CHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEe-CCceEEEEECCCccCCCCCHHHHHHHHHHHH
Confidence 348999999999999999999999887544322225666665555555 7888999999999986655566667777777
Q ss_pred hhhcCCccEEEEEEECCCCCCHHH
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEE 125 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~ 125 (231)
....+.+|++++|+|++ +++..+
T Consensus 107 ~~~~~~~~~~l~v~d~~-~~~~~~ 129 (239)
T 3lxx_A 107 LLTSPGPHALLLVVPLG-RYTEEE 129 (239)
T ss_dssp HHTTTCCSEEEEEEETT-CCSSHH
T ss_pred HhcCCCCcEEEEEeeCC-CCCHHH
Confidence 77778999999999997 565544
No 3
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.69 E-value=8.1e-17 Score=129.51 Aligned_cols=104 Identities=37% Similarity=0.564 Sum_probs=72.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCc-hHHHHHHHHH
Q 038053 22 GKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGS-EFVGKEIVKR 100 (231)
Q Consensus 22 ~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~-~~~~~~~~~~ 100 (231)
...+|+|||.+|||||||+|+|+|...+.......++|..+......+ .+..+.|+||||+++..... +.....+..+
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~ 98 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRW-DKCHVEVVDTPDIFSSQVSKTDPGCEERGHC 98 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEE-TTEEEEEEECCSCSSTTHHHHSTTSHHHHHH
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEE-CCcEEEEEECCCCCCCCCCcHHHHHHHHHHH
Confidence 348999999999999999999999987655433445676666666655 78899999999998643221 2223344455
Q ss_pred HhhhcCCccEEEEEEECCCCCCHHHHH
Q 038053 101 IGLAKGGIHAVLVVFSVRSRFSQEEEA 127 (231)
Q Consensus 101 ~~~~~~~~~~il~vvd~~~~~~~~~~~ 127 (231)
+....+.+|++++|+|++ +++..+..
T Consensus 99 ~~~~~~~~d~il~V~d~~-~~~~~~~~ 124 (247)
T 3lxw_A 99 YLLSAPGPHALLLVTQLG-RFTAQDQQ 124 (247)
T ss_dssp HHHHTTCCSEEEEEEETT-BCCHHHHH
T ss_pred HHhcCCCCCEEEEEEeCC-CCCHHHHH
Confidence 555558999999999998 67776654
No 4
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.68 E-value=8.9e-16 Score=127.31 Aligned_cols=153 Identities=16% Similarity=0.309 Sum_probs=108.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeC-CcEEEEEeCCCCcCCCCCchHHHHHHHHH
Q 038053 22 GKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDSSAGSEFVGKEIVKR 100 (231)
Q Consensus 22 ~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~ 100 (231)
++..|+++|++|||||||+|.|+|...... ...+++|.......... . +..+.++||||+.... ....+...+...
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~i~-s~~~~tT~~~~~~~~~~-~~~~~i~lvDTPG~~~~~-~~~~l~~~~~~~ 85 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTKVSII-SPKAGTTRMRVLGVKNI-PNEAQIIFLDTPGIYEPK-KSDVLGHSMVEI 85 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCC-CSSSCCCCSCEEEEEEE-TTTEEEEEEECCCCCCCC-TTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCcccc-CCCCCceeeEEEEEEec-CCCCeEEEEECcCCCccc-cchhHHHHHHHH
Confidence 345999999999999999999999876543 24556666555554444 5 7889999999998644 224566667766
Q ss_pred HhhhcCCccEEEEEEECCCCCCHHHHHh------cCCCCcHHHHHHHHHhh--H-------HHHHhhc---cchhhhhhh
Q 038053 101 IGLAKGGIHAVLVVFSVRSRFSQEEEAA------NGGQPYTDEFLAELKRG--A-------TELRDQQ---AEVDSLKEY 162 (231)
Q Consensus 101 ~~~~~~~~~~il~vvd~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~--~-------~~l~~~~---~~i~~is~~ 162 (231)
....+..+|++++|+|+++.++..+... ....|.+ .++|++|.. . ..+...+ .+++++||.
T Consensus 86 ~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvi-lV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~ 164 (308)
T 3iev_A 86 AKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVI-VVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISAL 164 (308)
T ss_dssp HHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEE-EEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTT
T ss_pred HHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEE-EEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCC
Confidence 6677788999999999997777665441 1223433 334444421 0 2344444 367889999
Q ss_pred hHhhHHHHHHHHHHHH
Q 038053 163 SKQEISKLMGQMQESY 178 (231)
Q Consensus 163 ~~~~i~~l~~~i~~~~ 178 (231)
+|.|+++++..+...+
T Consensus 165 ~g~gv~~L~~~l~~~l 180 (308)
T 3iev_A 165 KGANLDELVKTILKYL 180 (308)
T ss_dssp TTBSHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHhC
Confidence 9999999999988765
No 5
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.68 E-value=3.1e-16 Score=129.59 Aligned_cols=148 Identities=21% Similarity=0.241 Sum_probs=102.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
..|+|+|+||||||||+|.|+|....... ..+++|.......... .+..+.++||||+.... ..+...+......
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs-~~~~tTr~~i~~i~~~-~~~~l~l~DTpG~~~~~---~~l~~~~~~~~~~ 82 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKVAPIS-PRPQTTRKRLRGILTE-GRRQIVFVDTPGLHKPM---DALGEFMDQEVYE 82 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCC-SSSCCCCSCEEEEEEE-TTEEEEEEECCCCCCCC---SHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeec-CCCCceeEEEEEEEEe-CCcEEEEecCccccchh---hHHHHHHHHHHHH
Confidence 47999999999999999999998764432 3445565443333333 67789999999998643 3455556666667
Q ss_pred hcCCccEEEEEEECCCCCCHHHHH----hc-C--CCCcHHHHHHHHHhhH-HH-----HHhhc--cchhhhhhhhHhhHH
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEEEA----AN-G--GQPYTDEFLAELKRGA-TE-----LRDQQ--AEVDSLKEYSKQEIS 168 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~~~----~~-~--~~~~~~~~~~~~~~~~-~~-----l~~~~--~~i~~is~~~~~~i~ 168 (231)
.+..+|++++|+|++++++..+.. .. . ..|.+ .++|++|... .. +.... .+++++||.+|.|++
T Consensus 83 ~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~i-lV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gv~ 161 (301)
T 1wf3_A 83 ALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPIL-LVGNKLDAAKYPEEAMKAYHELLPEAEPRMLSALDERQVA 161 (301)
T ss_dssp HTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEE-EEEECGGGCSSHHHHHHHHHHTSTTSEEEECCTTCHHHHH
T ss_pred HHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEE-EEEECcccCCchHHHHHHHHHhcCcCcEEEEeCCCCCCHH
Confidence 788999999999998778776644 11 1 34443 4445554211 11 12211 256789999999999
Q ss_pred HHHHHHHHH
Q 038053 169 KLMGQMQES 177 (231)
Q Consensus 169 ~l~~~i~~~ 177 (231)
.++..+...
T Consensus 162 ~l~~~l~~~ 170 (301)
T 1wf3_A 162 ELKADLLAL 170 (301)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHh
Confidence 999988763
No 6
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.66 E-value=3e-16 Score=126.87 Aligned_cols=148 Identities=16% Similarity=0.206 Sum_probs=98.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCch--HHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSE--FVGKEIVKRI 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~--~~~~~~~~~~ 101 (231)
.+|+|+|.+|||||||+|.|+|.....+ ..+++|++........ .+..+.++||||.+....... ...+.+...+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~--~~pg~Tv~~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~ 78 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVG--NWPGVTVEKKTGEFLL-GEHLIEITDLPGVYSLVANAEGISQDEQIAAQS 78 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEE--ECTTSSSEEEEEEEEE-TTEEEEEEECCCCSSCC------CHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCcc--CCCCceEEEEEEEEEE-CCeEEEEEeCCCcccccccccCCCHHHHHHHHH
Confidence 4799999999999999999999975433 5778888777666666 777899999999987542110 2222333332
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH----hcCCCCcHHHHHHHHHhh--------HHHHHhhcc-chhhhhhhhHhhHH
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA----ANGGQPYTDEFLAELKRG--------ATELRDQQA-EVDSLKEYSKQEIS 168 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--------~~~l~~~~~-~i~~is~~~~~~i~ 168 (231)
.. ...+|++++|+|+++ ....... .....|++ .++|++|.. ...|...++ +++++||.+|.|++
T Consensus 79 ~~-~~~~d~vi~VvDas~-~~~~~~l~~~l~~~~~pvi-lv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~ 155 (256)
T 3iby_A 79 VI-DLEYDCIINVIDACH-LERHLYLTSQLFELGKPVV-VALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNIGIP 155 (256)
T ss_dssp HH-HSCCSEEEEEEEGGG-HHHHHHHHHHHTTSCSCEE-EEEECHHHHHHTTCEECHHHHHHHHCSCEEECBGGGTBSHH
T ss_pred Hh-hCCCCEEEEEeeCCC-chhHHHHHHHHHHcCCCEE-EEEEChhcCCcCCcHHHHHHHHHHcCCCEEEEECCCCCCHH
Confidence 22 268999999999984 2111111 22344444 333443311 134444444 78899999999999
Q ss_pred HHHHHHHHH
Q 038053 169 KLMGQMQES 177 (231)
Q Consensus 169 ~l~~~i~~~ 177 (231)
+++..+.+.
T Consensus 156 el~~~i~~~ 164 (256)
T 3iby_A 156 ALQQSLLHC 164 (256)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhh
Confidence 999998764
No 7
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.64 E-value=9.5e-16 Score=116.36 Aligned_cols=149 Identities=21% Similarity=0.252 Sum_probs=92.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
.+|+|+|++|||||||+|.|++...... ...+++|.+........ .+..+.++||||+.... .............
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~~~~~-~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~---~~~~~~~~~~~~~ 79 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGREAAIV-TDIAGTTRDVLREHIHI-DGMPLHIIDTAGLREAS---DEVERIGIERAWQ 79 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCC-CSSTTCCCSCEEEEEEE-TTEEEEEEECCCCSCCS---SHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCccee-eCCCCceeceeeEEEEE-CCeEEEEEECCCcccch---hHHHHHHHHHHHH
Confidence 7999999999999999999999864322 23455555544444444 66778899999986532 1111111111223
Q ss_pred hcCCccEEEEEEECCCCCCHHHHH-------h-cCCCCcHHHHHHHHHhhHH--HHHh-hccchhhhhhhhHhhHHHHHH
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEEEA-------A-NGGQPYTDEFLAELKRGAT--ELRD-QQAEVDSLKEYSKQEISKLMG 172 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~~~-------~-~~~~~~~~~~~~~~~~~~~--~l~~-~~~~i~~is~~~~~~i~~l~~ 172 (231)
.+..+|++++|+|+++..+..+.. . ....|++ .+.++.|...+ .+.. ...+++.+||++|.|+++++.
T Consensus 80 ~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~i-lv~NK~Dl~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~ 158 (172)
T 2gj8_A 80 EIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPIT-VVRNKADITGETLGMSEVNGHALIRLSARTGEGVDVLRN 158 (172)
T ss_dssp HHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEE-EEEECHHHHCCCCEEEEETTEEEEECCTTTCTTHHHHHH
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEE-EEEECccCCcchhhhhhccCCceEEEeCCCCCCHHHHHH
Confidence 346789999999998655433221 1 1123443 45566551100 0000 011567899999999999998
Q ss_pred HHHHHH
Q 038053 173 QMQESY 178 (231)
Q Consensus 173 ~i~~~~ 178 (231)
.+.+.+
T Consensus 159 ~l~~~~ 164 (172)
T 2gj8_A 159 HLKQSM 164 (172)
T ss_dssp HHHHHC
T ss_pred HHHHHh
Confidence 887654
No 8
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.63 E-value=6e-16 Score=126.27 Aligned_cols=148 Identities=18% Similarity=0.190 Sum_probs=98.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCc--hHHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGS--EFVGKEIVKRI 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~--~~~~~~~~~~~ 101 (231)
.+|+|+|.+|||||||+|.|+|.... . ...+++|++........ .+..+.++||||.++..... ..+.+.+...+
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~~~-v-~~~~g~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSRQR-V-GNWAGVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTCEE-E-EECTTSSSEEEEEEEEC-SSCEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcc-c-CCCCCeeEEEEEEEEEe-CCCceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 78999999999999999999999743 3 25778888776666665 67788999999998754321 12233333332
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH----hcCCCCcHHHHHHHHHhh--------HHHHHhhcc-chhhhhhhhHhhHH
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA----ANGGQPYTDEFLAELKRG--------ATELRDQQA-EVDSLKEYSKQEIS 168 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--------~~~l~~~~~-~i~~is~~~~~~i~ 168 (231)
. ....+|++++|+|+++ +...... .....|++ .++|++|.. ...+...++ +++.+|+.+|.|++
T Consensus 81 ~-~~~~~d~ii~VvD~~~-~~~~~~~~~~l~~~~~p~i-vv~NK~Dl~~~~~~~~~~~~l~~~lg~~~i~~SA~~g~gi~ 157 (274)
T 3i8s_A 81 I-LSGDADLLINVVDASN-LERNLYLTLQLLELGIPCI-VALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGRGIE 157 (274)
T ss_dssp H-HHTCCSEEEEEEEGGG-HHHHHHHHHHHHHHTCCEE-EEEECHHHHHHTTEEECHHHHHHHHTSCEEECCCGGGHHHH
T ss_pred H-hhcCCCEEEEEecCCC-hHHHHHHHHHHHhcCCCEE-EEEECccchhhhhHHHHHHHHHHhcCCCEEEEEcCCCCCHH
Confidence 2 2378999999999983 2111111 22234444 233443311 134444443 78889999999999
Q ss_pred HHHHHHHHH
Q 038053 169 KLMGQMQES 177 (231)
Q Consensus 169 ~l~~~i~~~ 177 (231)
+++..+.+.
T Consensus 158 el~~~i~~~ 166 (274)
T 3i8s_A 158 ALKLAIDRY 166 (274)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHHH
Confidence 999988654
No 9
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.63 E-value=6.6e-15 Score=119.07 Aligned_cols=148 Identities=20% Similarity=0.233 Sum_probs=98.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
.+|+|+|.+|||||||+|.|+|...... ..+++|.......... .+..+.++||||.+...... ..+.+...+..
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~~~~~~--~~pg~tv~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~--~~e~v~~~~~~ 80 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGTKQYVA--NWPGVTVEKKEGVFTY-KGYTINLIDLPGTYSLGYSS--IDEKIARDYLL 80 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTTCEEEE--ECTTSCCEEEEEEEEE-TTEEEEEEECCCCSSCCSSS--HHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCccc--CCCCceEEEEEEEEEE-CCeEEEEEECCCcCccCCCC--HHHHHHHHHHh
Confidence 6899999999999999999999876432 4677887766655555 67889999999998654322 12223222222
Q ss_pred hcCCccEEEEEEECCCCCCHHHHH----hcCCCCcHHHHHHHHHhh--------HHHHHhhcc-chhhhhhhhHhhHHHH
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEEEA----ANGGQPYTDEFLAELKRG--------ATELRDQQA-EVDSLKEYSKQEISKL 170 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--------~~~l~~~~~-~i~~is~~~~~~i~~l 170 (231)
. ..+|++++|+|+++ +...... .....|++ .++|++|.. ...+...++ +++.+|+++|.|++++
T Consensus 81 ~-~~~d~ii~V~D~t~-~~~~~~~~~~l~~~~~pvi-lv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi~~SA~~g~gi~el 157 (258)
T 3a1s_A 81 K-GDADLVILVADSVN-PEQSLYLLLEILEMEKKVI-LAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLEEL 157 (258)
T ss_dssp H-SCCSEEEEEEETTS-CHHHHHHHHHHHTTTCCEE-EEEECHHHHHHTTCCBCHHHHHHHHCSCEEECCTTTCTTHHHH
T ss_pred h-cCCCEEEEEeCCCc-hhhHHHHHHHHHhcCCCEE-EEEECcCCCCccchHHHHHHHHHHcCCCEEEEEeeCCcCHHHH
Confidence 2 67899999999984 3222111 23344544 233333311 134444444 7888999999999999
Q ss_pred HHHHHHHHH
Q 038053 171 MGQMQESYE 179 (231)
Q Consensus 171 ~~~i~~~~~ 179 (231)
+..+.....
T Consensus 158 ~~~i~~~~~ 166 (258)
T 3a1s_A 158 KEKIVEYAQ 166 (258)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 998877543
No 10
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.62 E-value=5.3e-15 Score=128.34 Aligned_cols=150 Identities=19% Similarity=0.246 Sum_probs=93.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
.+|+|||+||+|||||+|.|+|...... .+.+++|++.......+ .+..+.++||||+.... .+.+...+......
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v-~~~~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~--~~~~~~~~~~~~~~ 77 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIV-EDEEGVTRDPVQDTVEW-YGKTFKLVDTCGVFDNP--QDIISQKMKEVTLN 77 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEE-TTEEEEEEECTTTTSSG--GGCCCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcee-cCCCCCccceeeEEEEE-CCeEEEEEECCCccccc--cchHHHHHHHHHHH
Confidence 4799999999999999999999875444 36788888877777777 78889999999987521 11122334444555
Q ss_pred hcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHh------hH-HHHHh-hccchhhhhhhhHhhHHHH
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKR------GA-TELRD-QQAEVDSLKEYSKQEISKL 170 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~------~~-~~l~~-~~~~i~~is~~~~~~i~~l 170 (231)
++..+|++++|+|++++++..+.. .....|.+ .++|+.|. .. .++.. .+.+++.+||.+|.|+.++
T Consensus 78 ~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~i-lv~NK~D~~~~~~~~~~~~~~~lg~~~~~~iSA~~g~gv~~L 156 (439)
T 1mky_A 78 MIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTI-LVANKAENLREFEREVKPELYSLGFGEPIPVSAEHNINLDTM 156 (439)
T ss_dssp HHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEE-EEEESCCSHHHHHHHTHHHHGGGSSCSCEECBTTTTBSHHHH
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEeCCCCccccHHHHHHHHHhcCCCCEEEEeccCCCCHHHH
Confidence 668899999999998888876644 11233433 22233221 00 12221 1225677999999999999
Q ss_pred HHHHHHHH
Q 038053 171 MGQMQESY 178 (231)
Q Consensus 171 ~~~i~~~~ 178 (231)
++.+...+
T Consensus 157 ~~~i~~~l 164 (439)
T 1mky_A 157 LETIIKKL 164 (439)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99887654
No 11
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.61 E-value=1.2e-15 Score=124.24 Aligned_cols=148 Identities=16% Similarity=0.192 Sum_probs=98.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
.+|+|+|++|||||||+|.|+|.... .+ ..+++|.+.......+ .+..+.++||||+++..... ....+...+.
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~~~-~~-~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~--~~~~~~~~~~- 77 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLRQH-VG-NWPGVTVEKKEGIMEY-REKEFLVVDLPGIYSLTAHS--IDELIARNFI- 77 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTCEE-EE-ECTTSSCEEEEEEEEE-TTEEEEEEECCCCSCCCSSC--HHHHHHHHHH-
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcc-cC-CCCCeEEEeeEEEEEE-CCceEEEEeCCCccccccCC--HHHHHHHHhh-
Confidence 68999999999999999999999763 32 5677777766666666 77789999999998644321 1112222222
Q ss_pred hcCCccEEEEEEECCCCCCHHHHH----hcCC-CCcHHHHHHHHHh---h-----HHHHHhhcc-chhhhhhhhHhhHHH
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEEEA----ANGG-QPYTDEFLAELKR---G-----ATELRDQQA-EVDSLKEYSKQEISK 169 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~---~-----~~~l~~~~~-~i~~is~~~~~~i~~ 169 (231)
....+|++++|+|+++. ...... .... .|.+ .++|++|. . ...+...++ +++++|+.+|.|+.+
T Consensus 78 ~~~~~d~vi~v~D~~~~-~~~~~~~~~~~~~~~~p~i-lv~NK~Dl~~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~gi~~ 155 (271)
T 3k53_A 78 LDGNADVIVDIVDSTCL-MRNLFLTLELFEMEVKNII-LVLNKFDLLKKKGAKIDIKKMRKELGVPVIPTNAKKGEGVEE 155 (271)
T ss_dssp HTTCCSEEEEEEEGGGH-HHHHHHHHHHHHTTCCSEE-EEEECHHHHHHHTCCCCHHHHHHHHSSCEEECBGGGTBTHHH
T ss_pred hccCCcEEEEEecCCcc-hhhHHHHHHHHhcCCCCEE-EEEEChhcCcccccHHHHHHHHHHcCCcEEEEEeCCCCCHHH
Confidence 23689999999999842 111111 2223 4544 33344331 1 134555444 788899999999999
Q ss_pred HHHHHHHHHH
Q 038053 170 LMGQMQESYE 179 (231)
Q Consensus 170 l~~~i~~~~~ 179 (231)
++..+.....
T Consensus 156 l~~~i~~~~~ 165 (271)
T 3k53_A 156 LKRMIALMAE 165 (271)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999887654
No 12
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.60 E-value=2.3e-14 Score=112.67 Aligned_cols=156 Identities=13% Similarity=0.204 Sum_probs=98.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCCc-cccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchH--HHHHHH
Q 038053 22 GKRTVVLLGRTGNGKSATGNSILGRKA-FKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEF--VGKEIV 98 (231)
Q Consensus 22 ~~~~i~lvG~~g~GKSTLin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~--~~~~~~ 98 (231)
...+|+|+|.+|+|||||+|.|++... ... ...+++|............+..+.++||||+......... ....+.
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 106 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFA-SKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL 106 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCT-TCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceee-cCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence 347999999999999999999999862 222 2455666655444443225678899999998754322221 112233
Q ss_pred HHHhhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhhH------------HHHHhh-------cc
Q 038053 99 KRIGLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRGA------------TELRDQ-------QA 154 (231)
Q Consensus 99 ~~~~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~------------~~l~~~-------~~ 154 (231)
..+......+|++++|+|+++.++..+.. .....|++ .++++.|... ..+... ..
T Consensus 107 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i-~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 185 (223)
T 4dhe_A 107 SSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIH-SLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKL 185 (223)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEE-EEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCE
T ss_pred HHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEE-EEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCC
Confidence 33333446789999999998777776654 22233433 2333333100 122221 12
Q ss_pred chhhhhhhhHhhHHHHHHHHHHHHH
Q 038053 155 EVDSLKEYSKQEISKLMGQMQESYE 179 (231)
Q Consensus 155 ~i~~is~~~~~~i~~l~~~i~~~~~ 179 (231)
+++.+|+++|.|+.+++..+.+.+.
T Consensus 186 ~~~~~SA~~g~gv~~l~~~l~~~~~ 210 (223)
T 4dhe_A 186 TVQLFSALKRTGLDDAHALIESWLR 210 (223)
T ss_dssp EEEEEBTTTTBSHHHHHHHHHHHHC
T ss_pred eEEEeecCCCcCHHHHHHHHHHhcC
Confidence 6788999999999999988877543
No 13
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.59 E-value=5.6e-15 Score=122.09 Aligned_cols=147 Identities=17% Similarity=0.257 Sum_probs=96.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCc-CCCCCchHHHHHHHHHHh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF-DSSAGSEFVGKEIVKRIG 102 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~-~~~~~~~~~~~~~~~~~~ 102 (231)
..|+|+|+||||||||+|+|+|....... ..+++|.....+.... .+..+.++||||+. .. ...+...+.....
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~~~i~s-~~~~tTr~~~~gi~~~-~~~~i~~iDTpG~~~~~---~~~l~~~~~~~~~ 83 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQKISITS-RKAQTTRHRIVGIHTE-GAYQAIYVDTPGLHMEE---KRAINRLMNKAAS 83 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEEECC-CCSSCCSSCEEEEEEE-TTEEEEEESSSSCCHHH---HHHHHHHHTCCTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccC-CCCCcceeeEEEEEEE-CCeeEEEEECcCCCccc---hhhHHHHHHHHHH
Confidence 58999999999999999999999764332 3455565444444444 67788999999986 21 1122223333334
Q ss_pred hhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhhH---------HHHHhhcc--chhhhhhhhHhh
Q 038053 103 LAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRGA---------TELRDQQA--EVDSLKEYSKQE 166 (231)
Q Consensus 103 ~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~---------~~l~~~~~--~i~~is~~~~~~ 166 (231)
.++..+|++++|+|+++ ++..+.. .....|.+ .++|++|... ..+.+..+ .++++|++++.+
T Consensus 84 ~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~i-lvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~ 161 (301)
T 1ega_A 84 SSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVI-LAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLN 161 (301)
T ss_dssp SCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEE-EEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTT
T ss_pred HHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEE-EEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCC
Confidence 55688999999999986 8877654 22234443 2334433210 13333332 477899999999
Q ss_pred HHHHHHHHHHH
Q 038053 167 ISKLMGQMQES 177 (231)
Q Consensus 167 i~~l~~~i~~~ 177 (231)
+..+++.+...
T Consensus 162 v~~l~~~i~~~ 172 (301)
T 1ega_A 162 VDTIAAIVRKH 172 (301)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 99999988753
No 14
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.59 E-value=4e-15 Score=125.91 Aligned_cols=103 Identities=17% Similarity=0.238 Sum_probs=77.0
Q ss_pred cccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHH
Q 038053 14 WKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFV 93 (231)
Q Consensus 14 ~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~ 93 (231)
..|.+.+.+...|||||.||||||||||+|+|..... .+.+++|+++..+.... .+..+.++||||+.+.......+
T Consensus 63 ~~f~v~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v--~~~pftT~~~~~g~~~~-~~~~i~l~D~pGl~~~a~~~~~~ 139 (376)
T 4a9a_A 63 IGFDVARTGVASVGFVGFPSVGKSTLLSKLTGTESEA--AEYEFTTLVTVPGVIRY-KGAKIQMLDLPGIIDGAKDGRGR 139 (376)
T ss_dssp BTTTBCBCSSEEEEEECCCCHHHHHHHHHHHSBCCCG--GGTCSSCCCEEEEEEEE-TTEEEEEEECGGGCCC-----CH
T ss_pred CCceEeecCCCeEEEECCCCCCHHHHHHHHhCCCCcc--cCCCCceeeeeeEEEEe-CCcEEEEEeCCCccCCchhhhHH
Confidence 3455655555799999999999999999999987543 36788999888887777 88999999999998765544555
Q ss_pred HHHHHHHHhhhcCCccEEEEEEECCCCCCH
Q 038053 94 GKEIVKRIGLAKGGIHAVLVVFSVRSRFSQ 123 (231)
Q Consensus 94 ~~~~~~~~~~~~~~~~~il~vvd~~~~~~~ 123 (231)
+..++..+ ..+|++++|+|+++++.+
T Consensus 140 g~~~l~~i----~~ad~il~vvD~~~p~~~ 165 (376)
T 4a9a_A 140 GKQVIAVA----RTCNLLFIILDVNKPLHH 165 (376)
T ss_dssp HHHHHHHH----HHCSEEEEEEETTSHHHH
T ss_pred HHHHHHHH----HhcCccccccccCccHHH
Confidence 55555544 456999999999854433
No 15
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.58 E-value=3.3e-15 Score=129.53 Aligned_cols=159 Identities=21% Similarity=0.239 Sum_probs=96.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053 23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG 102 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~ 102 (231)
..+|+++|++|+|||||+|.|+|...... ...+++|.+........ .+..+.++||||+.......+.+.........
T Consensus 175 ~~ki~lvG~~nvGKSSLin~l~~~~~~~~-~~~~gtT~d~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 252 (436)
T 2hjg_A 175 VIQFCLIGRPNVGKSSLVNAMLGEERVIV-SNVAGTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 252 (436)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEE-C---------CCEEEEE-TTEEEEETTHHHHTCBTTBCCCCSHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCCCceee-cCCCCceeeeeEEEEEE-CCeEEEEEECCCcCcCccccchHHHHHHHHHH
Confidence 37999999999999999999999876433 24566776655444555 67789999999986533322211111111112
Q ss_pred hhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhh---------H-HHHHhhc-----cchhhhhhh
Q 038053 103 LAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRG---------A-TELRDQQ-----AEVDSLKEY 162 (231)
Q Consensus 103 ~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~---------~-~~l~~~~-----~~i~~is~~ 162 (231)
..+..+|++++|+|++++++.++.. ...+.+++ .++|+.|.. . ..+...+ .+++++||+
T Consensus 253 ~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~ii-iv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~ 331 (436)
T 2hjg_A 253 KAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVV-IVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSAL 331 (436)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEE-EEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTT
T ss_pred HHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEE-EEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecc
Confidence 2345679999999999888877754 12233332 222222210 0 1222222 167889999
Q ss_pred hHhhHHHHHHHHHHHHHHHHHH
Q 038053 163 SKQEISKLMGQMQESYEDQIKR 184 (231)
Q Consensus 163 ~~~~i~~l~~~i~~~~~~~~~~ 184 (231)
+|.|+.+++..+...+..+..+
T Consensus 332 tg~~v~~l~~~i~~~~~~~~~~ 353 (436)
T 2hjg_A 332 TKKRIHTLMPAIIKASENHSLR 353 (436)
T ss_dssp TCTTGGGHHHHHHHHHHHHTCC
T ss_pred cCCCHHHHHHHHHHHHHHhhcC
Confidence 9999999999998887765433
No 16
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.56 E-value=3.2e-15 Score=129.73 Aligned_cols=161 Identities=17% Similarity=0.217 Sum_probs=94.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCc-hHHHHHHHHHH
Q 038053 23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGS-EFVGKEIVKRI 101 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~-~~~~~~~~~~~ 101 (231)
..+|+|+|+||||||||+|.|+|...... ...+++|++.......+ .+..+.++||||+....... +..........
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~~~~~v-~~~~gtT~d~~~~~i~~-~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~ 257 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNKERALV-SPIPGTTRDPVDDEVFI-DGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRV 257 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEE-CCCC------CCEEEEE-TTEEEEESSCSCC-----------CCSCCHHH
T ss_pred CceEEEECCCCCCHHHHHHHHhCCccccc-CCCCCCcCCceEEEEEE-CCEEEEEEECCCCccccccchhhHHHHHHHHH
Confidence 37999999999999999999999975444 35667777665555555 77788999999985322111 00000000001
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHh----h--H----HHHHhhc-----cchhhhhh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKR----G--A----TELRDQQ-----AEVDSLKE 161 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~----~--~----~~l~~~~-----~~i~~is~ 161 (231)
...+..+|++++++|++++.+..+.. ...+.+++ .++++.|. . . ..+...+ .+++++||
T Consensus 258 ~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~i-lv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 336 (439)
T 1mky_A 258 VDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASV-VVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSA 336 (439)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEE-EEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBT
T ss_pred HHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEEC
Confidence 12335679999999998777766543 12233333 12222220 0 0 1222222 26778999
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHH
Q 038053 162 YSKQEISKLMGQMQESYEDQIKRIT 186 (231)
Q Consensus 162 ~~~~~i~~l~~~i~~~~~~~~~~~~ 186 (231)
++|.|+.+++..+.+.+..+..++.
T Consensus 337 ~~g~gv~~l~~~i~~~~~~~~~~i~ 361 (439)
T 1mky_A 337 DKGWNIDRMIDAMNLAYASYTTKVP 361 (439)
T ss_dssp TTTBSHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCCHHHHHHHHHHHHHhhcccCC
Confidence 9999999999999988877654443
No 17
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.56 E-value=7.2e-16 Score=133.72 Aligned_cols=149 Identities=19% Similarity=0.224 Sum_probs=91.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
.+|+|+|++|+|||||+|.|+|...... ...+++|++.......+ .+..+.++||||+.... ..+...+......
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~---~~~~~~~~~~~~~ 78 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEW-LNYDFNLIDTGGIDIGD---EPFLAQIRQQAEI 78 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTT-CSSCCEEEC------------CHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCCccceEEEEEEE-CCceEEEEECCCCCCcc---hhHHHHHHHHHHH
Confidence 5899999999999999999999876544 35778888776666666 67789999999986422 1244455555555
Q ss_pred hcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhhH-----HHHHh-hccchhhhhhhhHhhHHHHHH
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRGA-----TELRD-QQAEVDSLKEYSKQEISKLMG 172 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-----~~l~~-~~~~i~~is~~~~~~i~~l~~ 172 (231)
++..+|++++|+|+.++++..+.. .....|.+ .++|+.|... .++.. .+.+++.+||.+|.|+.++++
T Consensus 79 ~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvi-lv~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~gv~~L~~ 157 (436)
T 2hjg_A 79 AMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVV-LAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLD 157 (436)
T ss_dssp HHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEE-EEEECCCC-----CCCSSGGGSSCCCEECBTTTTBTHHHHHH
T ss_pred HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECccCccchhhHHHHHHcCCCCeEEEeCcCCCChHHHHH
Confidence 667889999999998888877654 22334443 4445544211 01111 123677899999999999999
Q ss_pred HHHHHH
Q 038053 173 QMQESY 178 (231)
Q Consensus 173 ~i~~~~ 178 (231)
.+...+
T Consensus 158 ~i~~~l 163 (436)
T 2hjg_A 158 AVAEHF 163 (436)
T ss_dssp HHHHTG
T ss_pred HHHHhc
Confidence 887654
No 18
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.55 E-value=1.1e-14 Score=126.94 Aligned_cols=160 Identities=21% Similarity=0.244 Sum_probs=101.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053 23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG 102 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~ 102 (231)
..+|+++|.+|+|||||+|.|+|...... ...+++|.+........ .+..+.++||||+...................
T Consensus 195 ~~ki~ivG~~~vGKSslin~l~~~~~~~~-~~~~gtt~~~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 272 (456)
T 4dcu_A 195 VIQFCLIGRPNVGKSSLVNAMLGEERVIV-SNVAGTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 272 (456)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEE-CC------CTTSEEEEE-TTEEEEETTGGGTTTBTTBCCCCSHHHHHHHH
T ss_pred cceeEEecCCCCCHHHHHHHHhCCCcccc-CCCCCeEEEEEEEEEEE-CCceEEEEECCCCCcCcccchHHHHHHHHHHH
Confidence 48999999999999999999999875444 24566676655444555 77789999999986533221111111111122
Q ss_pred hhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhh---------H-HHHHhhc-----cchhhhhhh
Q 038053 103 LAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRG---------A-TELRDQQ-----AEVDSLKEY 162 (231)
Q Consensus 103 ~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~---------~-~~l~~~~-----~~i~~is~~ 162 (231)
..+..+|++++|+|+++.+...+.. ...+.+++ .+.|+.|.. . +.+.+.+ .+++++||+
T Consensus 273 ~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~i-lv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 351 (456)
T 4dcu_A 273 KAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVV-IVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSAL 351 (456)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEE-EEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTT
T ss_pred HHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEE-EEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCC
Confidence 2346779999999999888887765 22334443 223333310 0 2233332 267889999
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHH
Q 038053 163 SKQEISKLMGQMQESYEDQIKRI 185 (231)
Q Consensus 163 ~~~~i~~l~~~i~~~~~~~~~~~ 185 (231)
+|.|+.+++..+.+.+..+..++
T Consensus 352 ~g~gv~~l~~~i~~~~~~~~~~~ 374 (456)
T 4dcu_A 352 TKKRIHTLMPAIIKASENHSLRV 374 (456)
T ss_dssp TCTTGGGHHHHHHHHHHHHTCCC
T ss_pred CCcCHHHHHHHHHHHHHHhcccC
Confidence 99999999999998877665443
No 19
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.54 E-value=3.8e-14 Score=115.38 Aligned_cols=145 Identities=17% Similarity=0.221 Sum_probs=91.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
.+|+|+|+||||||||+|.|+|...... ..+++|.+........ +..+.++||||.+...... ..+.+...+..
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~~~v~--~~pg~tv~~~~~~~~~--~~~l~l~DtpG~~~~~~~~--~~e~v~~~~~~ 77 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHNQRVG--NWPGVTVERKSGLVKK--NKDLEIQDLPGIYSMSPYS--PEAKVARDYLL 77 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCCCC--SSSCCCCSCEEEECTT--CTTEEEEECCCCSCSSCSS--HHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCccc--CCCCCcEEEEEEEEec--CCeEEEEECCCcCccCCCC--hHHHHHHHHHh
Confidence 6899999999999999999999864432 4667777654444322 5678899999987643221 12223222222
Q ss_pred hcCCccEEEEEEECCCCCCHHHHH----hcCCCCcHHHHHHHHHh--------hHHHHHhhcc-chhhhhhhhHhhHHHH
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEEEA----ANGGQPYTDEFLAELKR--------GATELRDQQA-EVDSLKEYSKQEISKL 170 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--------~~~~l~~~~~-~i~~is~~~~~~i~~l 170 (231)
. ..+|++++|+|+++ ....... .....|++ .+.+++|. ....|...++ +++.+||.+|.|++++
T Consensus 78 ~-~~~d~vi~V~D~t~-~e~~~~~~~~l~~~~~p~i-lv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el 154 (272)
T 3b1v_A 78 S-QRADSILNVVDATN-LERNLYLTTQLIETGIPVT-IALNMIDVLDGQGKKINVDKLSYHLGVPVVATSALKQTGVDQV 154 (272)
T ss_dssp T-TCCSEEEEEEEGGG-HHHHHHHHHHHHHTCSCEE-EEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBTTTTBSHHHH
T ss_pred c-CCCCEEEEEecCCc-hHhHHHHHHHHHhcCCCEE-EEEEChhhCCcCCcHHHHHHHHHHcCCCEEEEEccCCCCHHHH
Confidence 2 57899999999983 2111111 22344443 22233221 1124444444 7888999999999999
Q ss_pred HHHHHHH
Q 038053 171 MGQMQES 177 (231)
Q Consensus 171 ~~~i~~~ 177 (231)
+..+...
T Consensus 155 ~~~i~~~ 161 (272)
T 3b1v_A 155 VKKAAHT 161 (272)
T ss_dssp HHHHHHS
T ss_pred HHHHHHH
Confidence 9988763
No 20
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.54 E-value=1.4e-15 Score=132.52 Aligned_cols=148 Identities=20% Similarity=0.227 Sum_probs=92.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
.+|+|+|++|||||||+|.|+|...... ...+++|.+.......+ .+..+.++||||+.... +.....+......
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~~~~~v-~~~~g~t~~~~~~~~~~-~~~~~~liDT~G~~~~~---~~~~~~~~~~~~~ 98 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEW-LNYDFNLIDTGGIDIGD---EPFLAQIRQQAEI 98 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTT-CSSCCEEECCCC---------CCHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcceeEEEEEEEE-CCceEEEEECCCCCCcc---hHHHHHHHHHHHh
Confidence 5899999999999999999999875443 35678888777666666 67789999999987422 2234455555555
Q ss_pred hcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhhH--HHHHh----hccchhhhhhhhHhhHHHHHH
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRGA--TELRD----QQAEVDSLKEYSKQEISKLMG 172 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~--~~l~~----~~~~i~~is~~~~~~i~~l~~ 172 (231)
++..+|++++|+|..++++..+.. .....|++ .++++.|... ..+.+ .+..++.+||.+|.|+.+++.
T Consensus 99 ~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvi-lV~NK~D~~~~~~~~~e~~~lg~~~~~~iSA~~g~gv~~L~~ 177 (456)
T 4dcu_A 99 AMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVV-LAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLD 177 (456)
T ss_dssp HHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEE-EEEECC---------CCSGGGSSSSEEECCTTTCTTHHHHHH
T ss_pred hHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEE-EEEECccchhhhhhHHHHHHcCCCceEEeecccccchHHHHH
Confidence 667889999999998788887765 22344443 3445544211 11111 122456789999999999988
Q ss_pred HHHHH
Q 038053 173 QMQES 177 (231)
Q Consensus 173 ~i~~~ 177 (231)
.+...
T Consensus 178 ~i~~~ 182 (456)
T 4dcu_A 178 AVAEH 182 (456)
T ss_dssp HHHTT
T ss_pred HHHhh
Confidence 87654
No 21
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.54 E-value=3.6e-15 Score=130.37 Aligned_cols=150 Identities=19% Similarity=0.278 Sum_probs=99.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCc-CCCCCchHHHHHHHHHHh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF-DSSAGSEFVGKEIVKRIG 102 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~-~~~~~~~~~~~~~~~~~~ 102 (231)
.+|+|+|+||||||||+|.|++...... ...+++|.+........ .+..+.++||||+. ......+..+.. ...
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~v-s~~~gTT~d~~~~~i~~-~g~~~~l~DTaG~~~~~~~~ve~~gi~---~~~ 318 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIV-TDIPGTTRDVISEEIVI-RGILFRIVDTAGVRSETNDLVERLGIE---RTL 318 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCC-CCSSCCSSCSCCEEEEE-TTEEEEEEESSCCCSSCCTTCCCCCHH---HHH
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCcc-CCCCCeeeeeEEEEEec-CCeEEEEEECCCccccchhhHHHHHHH---HHH
Confidence 7899999999999999999999865433 35667777766555655 78889999999987 543221111111 111
Q ss_pred hhcCCccEEEEEEECCCCCCHHHHH---hcCCCCcHHHHHHHHHhh----HHHHHhhcc---chhhhhhhhHhhHHHHHH
Q 038053 103 LAKGGIHAVLVVFSVRSRFSQEEEA---ANGGQPYTDEFLAELKRG----ATELRDQQA---EVDSLKEYSKQEISKLMG 172 (231)
Q Consensus 103 ~~~~~~~~il~vvd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~----~~~l~~~~~---~i~~is~~~~~~i~~l~~ 172 (231)
..+..+|++++|+|+++..+..+.. .....|.+ .++|++|.. ...+....+ +++.+|+++|.|+++++.
T Consensus 319 ~~~~~aD~vl~VvD~s~~~s~~~~~il~~l~~~pii-vV~NK~DL~~~~~~~~~~~~~~~~~~~i~iSAktg~Gi~eL~~ 397 (482)
T 1xzp_A 319 QEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYL-VVINKVDVVEKINEEEIKNKLGTDRHMVKISALKGEGLEKLEE 397 (482)
T ss_dssp HHHHHCSEEEEEEETTSCCCHHHHHHHHHHTTSSEE-EEEEECSSCCCCCHHHHHHHHTCSTTEEEEEGGGTCCHHHHHH
T ss_pred HHhhcccEEEEEecCCCCCCHHHHHHHHHhcCCCEE-EEEECcccccccCHHHHHHHhcCCCcEEEEECCCCCCHHHHHH
Confidence 2335679999999998777665543 11233433 344554421 023332222 678899999999999999
Q ss_pred HHHHHHH
Q 038053 173 QMQESYE 179 (231)
Q Consensus 173 ~i~~~~~ 179 (231)
.+.+.+.
T Consensus 398 ~l~~~~~ 404 (482)
T 1xzp_A 398 SIYRETQ 404 (482)
T ss_dssp HHHHHTH
T ss_pred HHHHHHh
Confidence 9988644
No 22
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.53 E-value=1.5e-14 Score=126.26 Aligned_cols=150 Identities=20% Similarity=0.288 Sum_probs=81.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
.+|+|+|++|||||||+|.|++...... ...+++|.+........ .+..+.++||||+.... ..+..........
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~~~a~v-s~~~gtT~d~~~~~i~~-~g~~l~liDT~G~~~~~---~~ve~~gi~~~~~ 308 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQERAIV-SHMPGTTRDYIEECFIH-DKTMFRLTDTAGLREAG---EEIEHEGIRRSRM 308 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC-------------------CEEEEE-TTEEEEEEC-----------------------C
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccc-CCCCCceEEEEEEEEEE-CCeEEEEEECCCCCcch---hHHHHHHHHHHHh
Confidence 7899999999999999999999865433 24667777665555555 78889999999987532 1111222233345
Q ss_pred hcCCccEEEEEEECCCCCCH----HHHH---hcCCCCcHHHHHHHHHhhH------HHHHhh-ccchhhhhhhhHhhHHH
Q 038053 104 AKGGIHAVLVVFSVRSRFSQ----EEEA---ANGGQPYTDEFLAELKRGA------TELRDQ-QAEVDSLKEYSKQEISK 169 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~----~~~~---~~~~~~~~~~~~~~~~~~~------~~l~~~-~~~i~~is~~~~~~i~~ 169 (231)
.+..+|++++|+|+++..+. .+.. .....|++ .++|+.|... ..+.+. ..+++.+|+++|.|+++
T Consensus 309 ~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~~piI-vV~NK~Dl~~~~~~~~~~l~~~~~~~~i~vSAktg~GI~e 387 (476)
T 3gee_A 309 KMAEADLILYLLDLGTERLDDELTEIRELKAAHPAAKFL-TVANKLDRAANADALIRAIADGTGTEVIGISALNGDGIDT 387 (476)
T ss_dssp CCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCTTSEEE-EEEECTTSCTTTHHHHHHHHHHHTSCEEECBTTTTBSHHH
T ss_pred hcccCCEEEEEEECCCCcchhhhHHHHHHHHhcCCCCEE-EEEECcCCCCccchhHHHHHhcCCCceEEEEECCCCCHHH
Confidence 56889999999999977665 2222 11233333 3445544211 123332 34678899999999999
Q ss_pred HHHHHHHHHH
Q 038053 170 LMGQMQESYE 179 (231)
Q Consensus 170 l~~~i~~~~~ 179 (231)
++..+.+.+.
T Consensus 388 L~~~i~~~~~ 397 (476)
T 3gee_A 388 LKQHMGDLVK 397 (476)
T ss_dssp HHHHHTHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988765
No 23
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.53 E-value=2e-13 Score=102.60 Aligned_cols=146 Identities=18% Similarity=0.251 Sum_probs=86.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
.+|+|+|++|||||||+|.|+|...... ..+++|.+........ .+..+.++||||........ ..+.+...+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~--~~~~~~~~~~~ 78 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVYIG--NWPGVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANS--IDEIIARDYII 78 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSSCC-------CCCCCEEEEEE-TTEEEEEEECCCCSCSSSSS--HHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCeecc--CCCCcceeeeEEEEEE-CCcEEEEEECCCcccCCCcc--hhHHHHHHHHh
Confidence 6899999999999999999999764322 3345555444444444 56788999999987643221 11222222221
Q ss_pred hcCCccEEEEEEECCCCCCHHHHH----hcCCCCcHHHHHHHHHhh--------HHHHHhhcc-chhhhhhhhHhhHHHH
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEEEA----ANGGQPYTDEFLAELKRG--------ATELRDQQA-EVDSLKEYSKQEISKL 170 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--------~~~l~~~~~-~i~~is~~~~~~i~~l 170 (231)
. ..+|++++++|+++ +...... .....|.+ .+.++.|.. ...+....+ +++.+||++|.|++++
T Consensus 79 ~-~~~~~~i~v~D~~~-~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~v~~l 155 (165)
T 2wji_A 79 N-EKPDLVVNIVDATA-LERNLYLTLQLMEMGANLL-LALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEEL 155 (165)
T ss_dssp H-HCCSEEEEEEETTC-HHHHHHHHHHHHHTTCCEE-EEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHH
T ss_pred c-CCCCEEEEEecCCc-hhHhHHHHHHHHhcCCCEE-EEEEchHhccccChhhHHHHHHHHhCCCEEEEEcCCCCCHHHH
Confidence 1 36799999999984 2211111 12234443 223333311 123333333 6778999999999999
Q ss_pred HHHHHHH
Q 038053 171 MGQMQES 177 (231)
Q Consensus 171 ~~~i~~~ 177 (231)
+..+...
T Consensus 156 ~~~l~~~ 162 (165)
T 2wji_A 156 KKAISIA 162 (165)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887653
No 24
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.53 E-value=1.8e-13 Score=105.17 Aligned_cols=150 Identities=18% Similarity=0.224 Sum_probs=86.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCC-ccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCch--HHHHHHH
Q 038053 22 GKRTVVLLGRTGNGKSATGNSILGRK-AFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSE--FVGKEIV 98 (231)
Q Consensus 22 ~~~~i~lvG~~g~GKSTLin~l~g~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~--~~~~~~~ 98 (231)
...+|+++|.+|+|||||+|.|++.. .... ...++.|....... .+..+.++||||+........ .....+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~t~~~~~~~----~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLART-SSKPGKTQTLNFYI----INDELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC--------------CCEEEEE----ETTTEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccc-CCCCCceeeEEEEE----ECCcEEEEECCCCCccccCHHHHHHHHHHH
Confidence 34899999999999999999999986 2222 23444554433222 133688999999765432211 1111122
Q ss_pred HHHhhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhh----H----HHHHhhc-----cchhhhh
Q 038053 99 KRIGLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRG----A----TELRDQQ-----AEVDSLK 160 (231)
Q Consensus 99 ~~~~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~----~----~~l~~~~-----~~i~~is 160 (231)
..+......+|++++|+|+++..+..+.. .....|++ .++++.|.. . ..+.+.+ .+++.+|
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i-~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 175 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVI-VIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFS 175 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEE-EEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECC
T ss_pred HHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEE
Confidence 22333335669999999998777776643 12233433 223333210 0 1233222 2677899
Q ss_pred hhhHhhHHHHHHHHHHH
Q 038053 161 EYSKQEISKLMGQMQES 177 (231)
Q Consensus 161 ~~~~~~i~~l~~~i~~~ 177 (231)
++++.|+++++..+.+.
T Consensus 176 a~~~~gv~~l~~~l~~~ 192 (195)
T 1svi_A 176 SETKKGKDEAWGAIKKM 192 (195)
T ss_dssp TTTCTTHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHH
Confidence 99999999999887664
No 25
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.52 E-value=2.2e-13 Score=104.39 Aligned_cols=150 Identities=18% Similarity=0.227 Sum_probs=91.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCch--HHHHHHHHH
Q 038053 23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSE--FVGKEIVKR 100 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~--~~~~~~~~~ 100 (231)
..+|+++|.+|||||||+|.|++...... ....+.|....... .+..+.++||||+........ .....+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~t~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 97 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRKIAFV-SKTPGKTRSINFYL----VNSKYYFVDLPGYGYAKVSKKERMLWKRLVED 97 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSCCSCC-CSSCCCCCCEEEEE----ETTTEEEEECCCBSSSCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCccccc-cCCCCCccCeEEEE----ECCcEEEEECCCCccccCChhhHHHHHHHHHH
Confidence 37999999999999999999999874333 23444454333221 244577999999765322111 112223333
Q ss_pred HhhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhh----H----HHHHhhc---c--chhhhhhh
Q 038053 101 IGLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRG----A----TELRDQQ---A--EVDSLKEY 162 (231)
Q Consensus 101 ~~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~----~----~~l~~~~---~--~i~~is~~ 162 (231)
+......+|++++|+|+++..+..+.. .....|++ .+.++.|.. . +.+.... . +++.+|++
T Consensus 98 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i-~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 176 (195)
T 3pqc_A 98 YFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFT-IVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSV 176 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEE-EEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTT
T ss_pred HHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEE-EEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecC
Confidence 334446779999999998776665543 22233433 233333310 0 1222222 2 67789999
Q ss_pred hHhhHHHHHHHHHHHH
Q 038053 163 SKQEISKLMGQMQESY 178 (231)
Q Consensus 163 ~~~~i~~l~~~i~~~~ 178 (231)
++.|+++++..+.+..
T Consensus 177 ~~~gv~~l~~~l~~~l 192 (195)
T 3pqc_A 177 TGEGISELLDLISTLL 192 (195)
T ss_dssp TCTTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999998887654
No 26
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.50 E-value=7.3e-15 Score=127.86 Aligned_cols=150 Identities=21% Similarity=0.223 Sum_probs=92.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
.+|+|+|++|+|||||+|.|++...... ...+++|.+........ .+..+.++||||+.+... .+..........
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~~a~v-~~~~gtT~d~~~~~i~~-~g~~v~liDT~G~~~~~~---~ve~~gi~~~~~ 299 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSDRAIV-TDLPGTTRDVVESQLVV-GGIPVQVLDTAGIRETSD---QVEKIGVERSRQ 299 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHBSCC-SCCTTCCHHHHHHEEEE-TTEEEEECC-----------------------C
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCcccc-cCCCCeeEEEEEEEEEE-CCEEEEEEECCccccchh---HHHHHHHHHHhh
Confidence 7899999999999999999999765433 24566776654444444 788899999999865321 111111233344
Q ss_pred hcCCccEEEEEEECCCCCCHHHHH---hcCCCCcHHHHHHHHHhhH-HH---HHh--hccchhhhhhhhHhhHHHHHHHH
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEEEA---ANGGQPYTDEFLAELKRGA-TE---LRD--QQAEVDSLKEYSKQEISKLMGQM 174 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~---l~~--~~~~i~~is~~~~~~i~~l~~~i 174 (231)
.+..+|++++|+|+++.++..+.. .....|.+ .++|+.|... .. +.. ...+++.+|+++|.|+++++..+
T Consensus 300 ~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~~pii-vV~NK~Dl~~~~~~~~~~~~~~~~~~i~iSAktg~Gi~eL~~~i 378 (462)
T 3geh_A 300 AANTADLVLLTIDAATGWTTGDQEIYEQVKHRPLI-LVMNKIDLVEKQLITSLEYPENITQIVHTAAAQKQGIDSLETAI 378 (462)
T ss_dssp CCCSCSEEEEEEETTTCSCHHHHHHHHHHTTSCEE-EEEECTTSSCGGGSTTCCCCTTCCCEEEEBTTTTBSHHHHHHHH
T ss_pred hhhcCCEEEEEeccCCCCCHHHHHHHHhccCCcEE-EEEECCCCCcchhhHHHHHhccCCcEEEEECCCCCCHHHHHHHH
Confidence 567899999999999888776644 11223443 4556655211 01 111 11257789999999999999999
Q ss_pred HHHHH
Q 038053 175 QESYE 179 (231)
Q Consensus 175 ~~~~~ 179 (231)
.+.+.
T Consensus 379 ~~~~~ 383 (462)
T 3geh_A 379 LEIVQ 383 (462)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 88654
No 27
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.50 E-value=7.1e-14 Score=106.86 Aligned_cols=151 Identities=19% Similarity=0.252 Sum_probs=92.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
.+|+|+|++|||||||+|.|++...... ..+++|.+........ .+..+.++||||........ ....+...+..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~--~~~~~~~~~~~ 82 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGENVYIG--NWPGVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANS--IDEIIARDYII 82 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTCEEEE--ECTTSCCEEEEEEEEE-TTEEEEEEECCCCSCCSSSS--HHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcccc--CCCCeeccceEEEEEe-CCcEEEEEECCCcCcccccc--HHHHHHHHHHh
Confidence 6999999999999999999999764332 3455666555555555 67889999999987643211 11122222211
Q ss_pred hcCCccEEEEEEECCCCCCHHHHH----hcCCCCcHHHHHHHHHhh--------HHHHHhhcc-chhhhhhhhHhhHHHH
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEEEA----ANGGQPYTDEFLAELKRG--------ATELRDQQA-EVDSLKEYSKQEISKL 170 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--------~~~l~~~~~-~i~~is~~~~~~i~~l 170 (231)
. ..+|++++++|.++ +...... .....|++ .+.++.|.. ...+....+ +++.+|++++.|++++
T Consensus 83 ~-~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 159 (188)
T 2wjg_A 83 N-EKPDLVVNIVDATA-LERNLYLTLQLMEMGANLL-LALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEEL 159 (188)
T ss_dssp H-HCCSEEEEEEEGGG-HHHHHHHHHHHHTTTCCEE-EEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHH
T ss_pred c-cCCCEEEEEecchh-HHHHHHHHHHHHhcCCCEE-EEEEhhhccccccchHHHHHHHHHhCCCeEEEEecCCCCHHHH
Confidence 1 35789999999873 2211111 22334443 223333311 123333333 6778999999999999
Q ss_pred HHHHHHHHHHHH
Q 038053 171 MGQMQESYEDQI 182 (231)
Q Consensus 171 ~~~i~~~~~~~~ 182 (231)
+..+.....+..
T Consensus 160 ~~~i~~~~~~~~ 171 (188)
T 2wjg_A 160 KKAISIAVKDKK 171 (188)
T ss_dssp HHHHHHHHTTC-
T ss_pred HHHHHHHHHhcc
Confidence 999887665544
No 28
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.49 E-value=9.3e-14 Score=103.28 Aligned_cols=146 Identities=21% Similarity=0.269 Sum_probs=88.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
.+|+++|.+|+|||||+|.+++...... ...+++|.......... .+..+.++||||....... ...+......
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~----~~~~~~~~~~ 75 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVV-ADVPGVTRDLKEGVVET-DRGRFLLVDTGGLWSGDKW----EKKIQEKVDR 75 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC------------CCEEEEEEE-TTEEEEEEECGGGCSSSSC----CHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeec-cCCCCceecceEEEEEe-CCceEEEEECCCCCCccch----HHHHHHHHHH
Confidence 5899999999999999999998764222 23444554444444444 6778899999998764321 1223333344
Q ss_pred hcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhhH-----HHHHhh-ccchhhhhhhhHhhHHHHHH
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRGA-----TELRDQ-QAEVDSLKEYSKQEISKLMG 172 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-----~~l~~~-~~~i~~is~~~~~~i~~l~~ 172 (231)
.+..+|++++++|.++.++..+.. .....|++ .+.++.|... .++... ..+++.+|++++.|+++++.
T Consensus 76 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 154 (161)
T 2dyk_A 76 ALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVI-LVATKVDDPKHELYLGPLYGLGFGDPIPTSSEHARGLEELLE 154 (161)
T ss_dssp HTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEE-EEEECCCSGGGGGGCGGGGGGSSCSCEECBTTTTBSHHHHHH
T ss_pred HHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEE-EEEECcccccchHhHHHHHhCCCCCeEEEecccCCChHHHHH
Confidence 557889999999998777765533 11223332 2333333110 122211 12677899999999999988
Q ss_pred HHHH
Q 038053 173 QMQE 176 (231)
Q Consensus 173 ~i~~ 176 (231)
.+.+
T Consensus 155 ~l~~ 158 (161)
T 2dyk_A 155 AIWE 158 (161)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 29
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.46 E-value=2.9e-13 Score=102.38 Aligned_cols=141 Identities=15% Similarity=0.207 Sum_probs=89.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
.+|+++|.+|||||||+|.+++...... ..++.+.......... .+..+.++||||....... ...
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~-----------~~~ 74 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRHSKVTEQ--EAGGITQHIGAYQVTV-NDKKITFLDTPGHEAFTTM-----------RAR 74 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHTTCSSCS--SCCSSSTTCCCCEEEE-TTEEEEESCCCSSSSSSCS-----------CCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCccccC--CCCceeEeeeEEEEEe-CCceEEEEECCCCHHHHHH-----------HHH
Confidence 7999999999999999999998764321 2333443333333334 6778889999997653321 123
Q ss_pred hcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhhH-------HHHHhh------c---cchhhhhhh
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRGA-------TELRDQ------Q---AEVDSLKEY 162 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-------~~l~~~------~---~~i~~is~~ 162 (231)
.+..+|++++|+|+++........ .....|++ .+.++.|... ..+... . .+++.+||+
T Consensus 75 ~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~i-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 153 (178)
T 2lkc_A 75 GAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPII-VAINKMDKPEANPDRVMQELMEYNLVPEEWGGDTIFCKLSAK 153 (178)
T ss_dssp SCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEE-EEEETTTSSCSCHHHHHHHHTTTTCCBTTTTSSEEEEECCSS
T ss_pred HHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEE-EEEECccCCcCCHHHHHHHHHhcCcChhHcCCcccEEEEecC
Confidence 457889999999998665554433 12233333 3334433110 112111 1 156779999
Q ss_pred hHhhHHHHHHHHHHHHH
Q 038053 163 SKQEISKLMGQMQESYE 179 (231)
Q Consensus 163 ~~~~i~~l~~~i~~~~~ 179 (231)
+|.|+++++..+.....
T Consensus 154 ~~~gv~~l~~~l~~~~~ 170 (178)
T 2lkc_A 154 TKEGLDHLLEMILLVSE 170 (178)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhhh
Confidence 99999999988877543
No 30
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.46 E-value=6e-12 Score=99.46 Aligned_cols=151 Identities=15% Similarity=0.127 Sum_probs=88.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCch-HHHHHHHHHH
Q 038053 23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSE-FVGKEIVKRI 101 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~-~~~~~~~~~~ 101 (231)
..+|+|+|.+|||||||+|.|++...... ..+++|.......... .+..+.++||||+.+...... ...... +
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~---~ 102 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRANVDVQ--SYSFTTKNLYVGHFDH-KLNKYQIIDTPGLLDRAFENRNTIEMTT---I 102 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTTCEEEE--CC-----CEEEEEEEE-TTEEEEEEECTTTTTSCGGGCCHHHHHH---H
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccC--CCCCcceeeeeeeeec-CCCeEEEEECCCCcCcccchhhhHHHHH---H
Confidence 38999999999999999999999865321 3444555444444443 567889999999965321111 111111 1
Q ss_pred hhhcCCccEEEEEEECCCCCCH--H-HHH-----hcC--CCCcHHHHHHHHHhh------------HHHHHhhc---cch
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQ--E-EEA-----ANG--GQPYTDEFLAELKRG------------ATELRDQQ---AEV 156 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~--~-~~~-----~~~--~~~~~~~~~~~~~~~------------~~~l~~~~---~~i 156 (231)
......+|++++|+|+++..+. . ... ... ..|++ .+.++.|.. ...+.... .++
T Consensus 103 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (228)
T 2qu8_A 103 TALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIV-IGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKF 181 (228)
T ss_dssp HHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEE-EEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEE
T ss_pred HHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEE-EEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceE
Confidence 1224677999999999865331 1 111 111 34443 333443310 01222222 357
Q ss_pred hhhhhhhHhhHHHHHHHHHHHHHH
Q 038053 157 DSLKEYSKQEISKLMGQMQESYED 180 (231)
Q Consensus 157 ~~is~~~~~~i~~l~~~i~~~~~~ 180 (231)
+.+||++|.|+++++..+...+..
T Consensus 182 ~~~SA~~g~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 182 SSFSTLTGVGVEQAKITACELLKN 205 (228)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEecccCCCHHHHHHHHHHHHHH
Confidence 789999999999999988776543
No 31
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.46 E-value=7e-12 Score=105.88 Aligned_cols=152 Identities=17% Similarity=0.178 Sum_probs=93.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCc-hHHHHHHHHHHh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGS-EFVGKEIVKRIG 102 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~-~~~~~~~~~~~~ 102 (231)
.+|+++|+||||||||+|.|+|...... ..++.|.......... .+..+.++||||+....... ..... ..+.
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~---~~~~ 241 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTAKPEIA--SYPFTTRGINVGQFED-GYFRYQIIDTPGLLDRPISERNEIEK---QAIL 241 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSSCCEEE--CCTTCSSCEEEEEEEE-TTEEEEEEECTTTSSSCSTTSCHHHH---HHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccC--CCCCeeeceeEEEEEe-cCceEEEEeCCCccccchhhhhHHHH---HHHH
Confidence 7999999999999999999999874322 3445555555444444 56788999999986532211 11111 1222
Q ss_pred hhcCCccEEEEEEECCCC--CCHHHHH-------h-cCCCCcHHHHHHHHHhhH----HHHH----hhccchhhhhhhhH
Q 038053 103 LAKGGIHAVLVVFSVRSR--FSQEEEA-------A-NGGQPYTDEFLAELKRGA----TELR----DQQAEVDSLKEYSK 164 (231)
Q Consensus 103 ~~~~~~~~il~vvd~~~~--~~~~~~~-------~-~~~~~~~~~~~~~~~~~~----~~l~----~~~~~i~~is~~~~ 164 (231)
.....+|.+++|+|+++. ++..... . ....|.+ .+.|+.|... ..+. ....+++.+||.+|
T Consensus 242 ~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~pii-lV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g 320 (357)
T 2e87_A 242 ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFL-VVINKIDVADEENIKRLEKFVKEKGLNPIKISALKG 320 (357)
T ss_dssp GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEE-EEECCTTTCCHHHHHHHHHHHHHTTCCCEECBTTTT
T ss_pred HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEE-EEEECcccCChHHHHHHHHHHHhcCCCeEEEeCCCC
Confidence 233468999999998743 2443322 1 1234443 2333333110 1111 11226788999999
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 038053 165 QEISKLMGQMQESYEDQI 182 (231)
Q Consensus 165 ~~i~~l~~~i~~~~~~~~ 182 (231)
.|+++++..+.+......
T Consensus 321 ~gi~~l~~~i~~~l~~~~ 338 (357)
T 2e87_A 321 TGIDLVKEEIIKTLRPLA 338 (357)
T ss_dssp BTHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHH
Confidence 999999999888765444
No 32
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.45 E-value=5e-13 Score=121.86 Aligned_cols=28 Identities=25% Similarity=0.436 Sum_probs=25.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccc
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKA 51 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~ 51 (231)
.+|+++|.+|+|||||+|+|+|......
T Consensus 70 ~~V~VvG~~naGKSSLlNaLlg~~~~~v 97 (695)
T 2j69_A 70 FRLLVLGDMKRGKSTFLNALIGENLLPS 97 (695)
T ss_dssp EEEEEECCTTSCHHHHHHHHHTSSCSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 8999999999999999999999876543
No 33
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.45 E-value=2.6e-14 Score=119.87 Aligned_cols=148 Identities=16% Similarity=0.195 Sum_probs=95.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
..|+|+|.+|||||||+|+|++..... ...+.+|...............+.++||||+.........+...++..+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i--~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i-- 234 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKI--ADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHI-- 234 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEE--SSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHH--
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCcc--ccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHH--
Confidence 369999999999999999999876432 2455566666655555523478999999998653333333445554443
Q ss_pred hcCCccEEEEEEECCC---CCCHHHHH--------h---cCCCCcHHHHHHHHHhh-----HHHHHhhcc---chhhhhh
Q 038053 104 AKGGIHAVLVVFSVRS---RFSQEEEA--------A---NGGQPYTDEFLAELKRG-----ATELRDQQA---EVDSLKE 161 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~---~~~~~~~~--------~---~~~~~~~~~~~~~~~~~-----~~~l~~~~~---~i~~is~ 161 (231)
.+++++++|+|+++ +-...+.. . ....|++ .++|++|.. ...+.+.+. +++.+|+
T Consensus 235 --~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~i-lV~NK~Dl~~~~e~~~~l~~~l~~~~~v~~iSA 311 (342)
T 1lnz_A 235 --ERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQI-IVANKMDMPEAAENLEAFKEKLTDDYPVFPISA 311 (342)
T ss_dssp --HHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBC-BEEECTTSTTHHHHHHHHHHHCCSCCCBCCCSS
T ss_pred --HhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEE-EEEECccCCCCHHHHHHHHHHhhcCCCEEEEEC
Confidence 45699999999974 22222211 1 1234443 444554421 123444443 6788999
Q ss_pred hhHhhHHHHHHHHHHHH
Q 038053 162 YSKQEISKLMGQMQESY 178 (231)
Q Consensus 162 ~~~~~i~~l~~~i~~~~ 178 (231)
.++.|+++++..+.+.+
T Consensus 312 ~tg~gi~eL~~~l~~~l 328 (342)
T 1lnz_A 312 VTREGLRELLFEVANQL 328 (342)
T ss_dssp CCSSTTHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHH
Confidence 99999999999887754
No 34
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.45 E-value=5.2e-13 Score=103.93 Aligned_cols=167 Identities=17% Similarity=0.206 Sum_probs=88.0
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCC-ccccccCCCCcceeeeeeeEEeeCCcEEEEEeC
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRK-AFKASADSSGVTKTCEMKTTVLKDGQVVNVIDT 80 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dt 80 (231)
++.|+. .++++ +.+.+| .+|+|+|+||||||||+|.|+|.. ..... ...+.|.... .... .+ ...++||
T Consensus 10 ~~~~~~-~~l~~--~~~~~~--~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~-~~~G~~~~~~--~~~~-~~-~~~l~Dt 79 (210)
T 1pui_A 10 HFVMSA-PDIRH--LPSDTG--IEVAFAGRSNAGKSSALNTLTNQKSLARTS-KTPGRTQLIN--LFEV-AD-GKRLVDL 79 (210)
T ss_dssp -CEEEE-SSGGG--SSCSCS--EEEEEEECTTSSHHHHHTTTCCC--------------CCEE--EEEE-ET-TEEEEEC
T ss_pred hheeec-CCHhH--CCCCCC--cEEEEECCCCCCHHHHHHHHhCCCcccccc-CCCccceeeE--EEEe-cC-CEEEEEC
Confidence 455653 56666 888999 999999999999999999999987 22111 2334443222 1222 22 4668999
Q ss_pred CCCcCCCCCch--HHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcH-----HHHHHHHHh-h-H
Q 038053 81 PGLFDSSAGSE--FVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYT-----DEFLAELKR-G-A 146 (231)
Q Consensus 81 pg~~~~~~~~~--~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~-----~~~~~~~~~-~-~ 146 (231)
||+........ .........+......++.+++++|+....+..+.. .....+.. .+..+...+ . .
T Consensus 80 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~ 159 (210)
T 1pui_A 80 PGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQL 159 (210)
T ss_dssp CCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHH
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHH
Confidence 99864211111 011112222222336789999999998666654322 11222221 112111000 0 0
Q ss_pred HHHHhh---c---cchhhhhhhhHhhHHHHHHHHHHHH
Q 038053 147 TELRDQ---Q---AEVDSLKEYSKQEISKLMGQMQESY 178 (231)
Q Consensus 147 ~~l~~~---~---~~i~~is~~~~~~i~~l~~~i~~~~ 178 (231)
..+... . -.+.++|+.++.++++++..+.+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 160 NMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp HHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 111111 1 1456789999999999988876643
No 35
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.45 E-value=8.4e-14 Score=107.17 Aligned_cols=147 Identities=10% Similarity=0.043 Sum_probs=83.3
Q ss_pred ccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCC
Q 038053 9 VIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSA 88 (231)
Q Consensus 9 ~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~ 88 (231)
.+++++++..+.. +|+++|++|||||||+|.+++...... ..|.......... .+..+.++||||......
T Consensus 12 ~~l~~~~~~~~~~---ki~~vG~~~vGKSsli~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~ 82 (190)
T 1m2o_B 12 DVLASLGLWNKHG---KLLFLGLDNAGKTTLLHMLKNDRLATL-----QPTWHPTSEELAI-GNIKFTTFDLGGHIQARR 82 (190)
T ss_dssp ------------C---EEEEEESTTSSHHHHHHHHHHSCCCCC-----CCCCSCEEEEEEE-TTEEEEEEECCCSGGGTT
T ss_pred HHHHHhhccCCcc---EEEEECCCCCCHHHHHHHHhcCCCCcc-----ccCCCCCeEEEEE-CCEEEEEEECCCCHHHHH
Confidence 3567777776664 999999999999999999998754221 1122222333444 668889999999764221
Q ss_pred CchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH----------hcCCCCcHHHHHHHHHhh----HHHHHhhc-
Q 038053 89 GSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA----------ANGGQPYTDEFLAELKRG----ATELRDQQ- 153 (231)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~----~~~l~~~~- 153 (231)
.....+..+|++++|+|++++-+..... .....|++ .+.++.|.. .+++.+.+
T Consensus 83 -----------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-lv~NK~Dl~~~~~~~~~~~~~~ 150 (190)
T 1m2o_B 83 -----------LWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFV-ILGNKIDAPNAVSEAELRSALG 150 (190)
T ss_dssp -----------SGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEE-EEEECTTSTTCCCHHHHHHHTT
T ss_pred -----------HHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEE-EEEECCCCcCCCCHHHHHHHhC
Confidence 1123456889999999998543322211 11233433 334443321 12232221
Q ss_pred ---------------cchhhhhhhhHhhHHHHHHHHHH
Q 038053 154 ---------------AEVDSLKEYSKQEISKLMGQMQE 176 (231)
Q Consensus 154 ---------------~~i~~is~~~~~~i~~l~~~i~~ 176 (231)
.+++.+|+++|.|+++++..+.+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 188 (190)
T 1m2o_B 151 LLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 188 (190)
T ss_dssp CSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred CccccccccccccceEEEEEeECCcCCCHHHHHHHHHh
Confidence 14677999999999999887653
No 36
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.44 E-value=7.4e-13 Score=107.84 Aligned_cols=156 Identities=15% Similarity=0.200 Sum_probs=74.9
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccC------CCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCc
Q 038053 19 SSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASAD------SSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGS 90 (231)
Q Consensus 19 ~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~------~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~ 90 (231)
.+|...+|+++|.+|+|||||+|+|++...+..... .++++.......... .+ ..+.++||||+.+.....
T Consensus 4 ~~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~liDTpG~~d~~~~~ 82 (274)
T 3t5d_A 4 GSGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKE-GGVQLLLTIVDTPGFGDAVDNS 82 (274)
T ss_dssp ---CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC---CCEEEEEEECCCCSCCSCCT
T ss_pred cCccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEec-CCeEEEEEEEECCCccccccch
Confidence 345457999999999999999999999887544210 122222222222222 22 378999999996543221
Q ss_pred ---hHHH----HHHHHHHhh---------hcCCccEEEEEEECCC-CCCHHHHH----hcCCCCcHHHHHHHHHhhH---
Q 038053 91 ---EFVG----KEIVKRIGL---------AKGGIHAVLVVFSVRS-RFSQEEEA----ANGGQPYTDEFLAELKRGA--- 146 (231)
Q Consensus 91 ---~~~~----~~~~~~~~~---------~~~~~~~il~vvd~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~--- 146 (231)
..+. ..+..++.. ...++|+++++++.+. .+...+.. .....|.+ .+++++|...
T Consensus 83 ~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~~~pvi-~V~nK~D~~~~~e 161 (274)
T 3t5d_A 83 NCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNII-PLIAKADTLTPEE 161 (274)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTTTSCEE-EEESSGGGSCHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhccCCEE-EEEeccCCCCHHH
Confidence 2222 111222221 1135789999997763 67777655 22234443 3444444110
Q ss_pred -----HHHHhhcc----chhhhhhhhHhhHHHHHHHHHH
Q 038053 147 -----TELRDQQA----EVDSLKEYSKQEISKLMGQMQE 176 (231)
Q Consensus 147 -----~~l~~~~~----~i~~is~~~~~~i~~l~~~i~~ 176 (231)
..+.+.+. +++.+|+.++.++.++...+.+
T Consensus 162 ~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~ 200 (274)
T 3t5d_A 162 CQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKD 200 (274)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCC-----------CHHHHH
T ss_pred HHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhc
Confidence 12222221 5677899999999988887765
No 37
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.44 E-value=3.4e-13 Score=115.71 Aligned_cols=160 Identities=14% Similarity=0.116 Sum_probs=97.7
Q ss_pred CCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCc
Q 038053 11 DGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGS 90 (231)
Q Consensus 11 ~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~ 90 (231)
.++++++++.+ ..|+|+|+||||||||+|+|++...... ..+.+|...............+.+.|+||+.+.....
T Consensus 147 ~~~i~lelk~g--~~VgLVG~~gAGKSTLL~~Lsg~~~~i~--~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~ 222 (416)
T 1udx_A 147 KRRLRLELMLI--ADVGLVGYPNAGKSSLLAAMTRAHPKIA--PYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEG 222 (416)
T ss_dssp EEEEEEEECCS--CSEEEECCGGGCHHHHHHHHCSSCCEEC--CCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGS
T ss_pred EeeeeeEEcCC--CEEEEECCCCCcHHHHHHHHHcCCcccc--CcccceecceeeEEEecCcceEEEEeccccccchhhh
Confidence 35788999999 8999999999999999999999865332 3444555555555554223778899999997532211
Q ss_pred hHHHHHHHHHHhhhcCCccEEEEEEECC-CCCCHHHH---H---h---cCCCCcHHHHHHHHHhh----HHHHHhhc---
Q 038053 91 EFVGKEIVKRIGLAKGGIHAVLVVFSVR-SRFSQEEE---A---A---NGGQPYTDEFLAELKRG----ATELRDQQ--- 153 (231)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~il~vvd~~-~~~~~~~~---~---~---~~~~~~~~~~~~~~~~~----~~~l~~~~--- 153 (231)
..+...+.. ...+++.+++++|++ +.+..... + . ....|.+ .+++++|.. ...+...+
T Consensus 223 ~~L~~~fl~----~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~I-LVlNKlDl~~~~~~~~l~~~l~~~ 297 (416)
T 1udx_A 223 KGLGLEFLR----HIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSL-VALNKVDLLEEEAVKALADALARE 297 (416)
T ss_dssp CCSCHHHHH----HHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEE-EEEECCTTSCHHHHHHHHHHHHTT
T ss_pred hhhhHHHHH----HHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEE-EEEECCChhhHHHHHHHHHHHHhc
Confidence 112222222 236789999999996 11111110 0 0 0112222 111222210 01222222
Q ss_pred -cchhhhhhhhHhhHHHHHHHHHHHHH
Q 038053 154 -AEVDSLKEYSKQEISKLMGQMQESYE 179 (231)
Q Consensus 154 -~~i~~is~~~~~~i~~l~~~i~~~~~ 179 (231)
.+++.+||.++.++++++..+.+.+.
T Consensus 298 g~~vi~iSA~~g~gi~eL~~~i~~~l~ 324 (416)
T 1udx_A 298 GLAVLPVSALTGAGLPALKEALHALVR 324 (416)
T ss_dssp TSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCccCHHHHHHHHHHHHH
Confidence 26788999999999999999887654
No 38
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.43 E-value=3.3e-14 Score=110.20 Aligned_cols=147 Identities=13% Similarity=0.070 Sum_probs=86.1
Q ss_pred ccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCC
Q 038053 9 VIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSA 88 (231)
Q Consensus 9 ~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~ 88 (231)
.+++++++..+. .+|+++|++|||||||+|.+++.......+ ..+.+ ...... .+..+.++||||......
T Consensus 14 ~~l~~~~~~~~~---~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~-t~~~~----~~~~~~-~~~~l~i~Dt~G~~~~~~ 84 (198)
T 1f6b_A 14 SVLQFLGLYKKT---GKLVFLGLDNAGKTTLLHMLKDDRLGQHVP-TLHPT----SEELTI-AGMTFTTFDLGGHIQARR 84 (198)
T ss_dssp HHHHHHTCTTCC---EEEEEEEETTSSHHHHHHHHSCC------C-CCCCS----CEEEEE-TTEEEEEEEECC----CC
T ss_pred HHHHHhhccCCC---cEEEEECCCCCCHHHHHHHHhcCCCCccCC-CCCce----eEEEEE-CCEEEEEEECCCcHhhHH
Confidence 567777777766 489999999999999999999876422211 11112 223333 567889999999654221
Q ss_pred CchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH------h----cCCCCcHHHHHHHHHhh----HHHHHhhc-
Q 038053 89 GSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA------A----NGGQPYTDEFLAELKRG----ATELRDQQ- 153 (231)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~------~----~~~~~~~~~~~~~~~~~----~~~l~~~~- 153 (231)
.....+..+|++++|+|+++.-+..... . ....|++ .+.++.|.. .+++.+.+
T Consensus 85 -----------~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~pii-lv~NK~Dl~~~~~~~~~~~~~~ 152 (198)
T 1f6b_A 85 -----------VWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPIL-ILGNKIDRPEAISEERLREMFG 152 (198)
T ss_dssp -----------GGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEE-EEEECTTSTTCCCHHHHHHHHT
T ss_pred -----------HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEE-EEEECCCccccCCHHHHHHHhC
Confidence 1123346789999999998543222211 1 1233443 333443321 01222211
Q ss_pred --------------------cchhhhhhhhHhhHHHHHHHHHH
Q 038053 154 --------------------AEVDSLKEYSKQEISKLMGQMQE 176 (231)
Q Consensus 154 --------------------~~i~~is~~~~~~i~~l~~~i~~ 176 (231)
.+++.+||++|.|+++++..+.+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~ 195 (198)
T 1f6b_A 153 LYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQ 195 (198)
T ss_dssp CTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred cccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHH
Confidence 15677999999999999887754
No 39
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.43 E-value=4.2e-13 Score=103.32 Aligned_cols=142 Identities=15% Similarity=0.098 Sum_probs=86.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 22 GKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 22 ~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
...+|+|+|.+|||||||+|.|++...... ....|.......... ....+.++||||..... ...
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~---~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~-----------~~~ 80 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQSSSK---HITATVGYNVETFEK-GRVAFTVFDMGGAKKFR-----------GLW 80 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC-------CCCCCSSEEEEEEEE-TTEEEEEEEECCSGGGG-----------GGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCccc---ccccccceeEEEEEe-CCEEEEEEECCCCHhHH-----------HHH
Confidence 347999999999999999999999875321 111222222333333 67889999999975421 112
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH------hcC-----------CCCcHHHHHHHHHhhH----HHHHhhc-------
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA------ANG-----------GQPYTDEFLAELKRGA----TELRDQQ------- 153 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~------~~~-----------~~~~~~~~~~~~~~~~----~~l~~~~------- 153 (231)
...+..+|++++|+|+++..+..... ... ..|++ .+.++.|... .++...+
T Consensus 81 ~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~pii-lv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 159 (199)
T 4bas_A 81 ETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFL-FFANKMDAAGAKTAAELVEILDLTTLMG 159 (199)
T ss_dssp GGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEE-EEEECTTSTTCCCHHHHHHHHTHHHHHT
T ss_pred HHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEE-EEEECcCCCCCCCHHHHHHHhcchhhcc
Confidence 24457899999999998553322221 111 34443 3344433111 1221111
Q ss_pred ---cchhhhhhhhHhhHHHHHHHHHHHHH
Q 038053 154 ---AEVDSLKEYSKQEISKLMGQMQESYE 179 (231)
Q Consensus 154 ---~~i~~is~~~~~~i~~l~~~i~~~~~ 179 (231)
-+++.+|++++.|+++++..+.....
T Consensus 160 ~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 188 (199)
T 4bas_A 160 DHPFVIFASNGLKGTGVHEGFSWLQETAS 188 (199)
T ss_dssp TSCEEEEECBTTTTBTHHHHHHHHHHHHH
T ss_pred CCeeEEEEeeCCCccCHHHHHHHHHHHHH
Confidence 15678999999999999988877543
No 40
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.43 E-value=1.3e-13 Score=104.41 Aligned_cols=143 Identities=14% Similarity=0.094 Sum_probs=85.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHH
Q 038053 23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKR 100 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~ 100 (231)
..+|+++|.+|+|||||+|.|++..... ...++.+.+........ .+ ..+.++||||.......
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~----------- 74 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADNTFSG--SYITTIGVDFKIRTVEI-NGEKVKLQIWDTAGQERFRTI----------- 74 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSCC-----CCTTTBSEEEEEEEEEE-TTEEEEEEEEEETTGGGCSSC-----------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCC--ccCCCceeEEEEEEEEE-CCEEEEEEEEcCCCchhhhhh-----------
Confidence 3799999999999999999999986532 12334444433333333 44 56788999996542211
Q ss_pred HhhhcCCccEEEEEEECCCCCCHHHHH--------hcCCCCcHHHHHHHHHhhH---------HHHHhhcc-chhhhhhh
Q 038053 101 IGLAKGGIHAVLVVFSVRSRFSQEEEA--------ANGGQPYTDEFLAELKRGA---------TELRDQQA-EVDSLKEY 162 (231)
Q Consensus 101 ~~~~~~~~~~il~vvd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~---------~~l~~~~~-~i~~is~~ 162 (231)
....+..+|++++|+|+++..+..... .....|++ .+.++.|... ..+....+ +++.+|+.
T Consensus 75 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 153 (181)
T 3tw8_B 75 TSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRI-LVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAK 153 (181)
T ss_dssp CGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEE-EEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTT
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEE-EEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECC
Confidence 123457889999999998533222211 11122322 2334433110 11211122 67789999
Q ss_pred hHhhHHHHHHHHHHHHHH
Q 038053 163 SKQEISKLMGQMQESYED 180 (231)
Q Consensus 163 ~~~~i~~l~~~i~~~~~~ 180 (231)
+|.|+++++..+......
T Consensus 154 ~~~gi~~l~~~l~~~~~~ 171 (181)
T 3tw8_B 154 ENVNVEEMFNCITELVLR 171 (181)
T ss_dssp TTBSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999998888775433
No 41
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.42 E-value=3.9e-13 Score=100.20 Aligned_cols=139 Identities=17% Similarity=0.175 Sum_probs=80.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
.+|+++|++|+|||||+|.+++..... ...+++.......... .+ ..+.++||||.... .. +..
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~----~~----~~~-- 69 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFIE---KYDPTIEDFYRKEIEV-DSSPSVLEILDTAGTEQF----AS----MRD-- 69 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCS---CCCTTCCEEEEEEEEE-TTEEEEEEEEECCCTTCC----HH----HHH--
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCcc---cCCCCcceeEEEEEEE-CCEEEEEEEEECCCchhh----HH----HHH--
Confidence 789999999999999999999765421 1111221111222222 33 34789999996542 11 111
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH----------hcCCCCcHHHHHHHHHhhH---------HHHHhhcc-chhhhhh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA----------ANGGQPYTDEFLAELKRGA---------TELRDQQA-EVDSLKE 161 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~---------~~l~~~~~-~i~~is~ 161 (231)
..+..+|.+++|+|+++..+..... .....|++ .+.++.|... ..+....+ +++.+|+
T Consensus 70 -~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 147 (167)
T 1kao_A 70 -LYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVI-LVGNKVDLESEREVSSSEGRALAEEWGCPFMETSA 147 (167)
T ss_dssp -HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEE-EEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECT
T ss_pred -HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECCcccccccCCHHHHHHHHHHhCCCEEEecC
Confidence 1234568999999998532222111 11234443 3344444110 12222222 6778899
Q ss_pred hhHhhHHHHHHHHHHHH
Q 038053 162 YSKQEISKLMGQMQESY 178 (231)
Q Consensus 162 ~~~~~i~~l~~~i~~~~ 178 (231)
++|.|+++++..+.+..
T Consensus 148 ~~~~gi~~l~~~l~~~~ 164 (167)
T 1kao_A 148 KSKTMVDELFAEIVRQM 164 (167)
T ss_dssp TCHHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHH
Confidence 99999999998887654
No 42
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.42 E-value=4.6e-13 Score=100.49 Aligned_cols=137 Identities=14% Similarity=0.086 Sum_probs=84.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
.+|+++|.+|+|||||+|.+++...... ..|.......... .+..+.++||||..... .....
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~~~Dt~G~~~~~-----------~~~~~ 70 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVGEVVTT-----IPTIGFNVETVTY-KNLKFQVWDLGGLTSIR-----------PYWRC 70 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCCCC-----CCCSSEEEEEEEE-TTEEEEEEEECCCGGGG-----------GGGGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCc-----CCcCccceEEEEE-CCEEEEEEECCCChhhh-----------HHHHH
Confidence 7999999999999999999987654211 1122222333344 67788999999975411 11234
Q ss_pred hcCCccEEEEEEECCCCCCHHHHH------hc----CCCCcHHHHHHHHHhhH----HHHHhhc--------c-chhhhh
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEEEA------AN----GGQPYTDEFLAELKRGA----TELRDQQ--------A-EVDSLK 160 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~----~~l~~~~--------~-~i~~is 160 (231)
.+..+|++++|+|+++..+..... .. ...|++ .+.++.|... ..+...+ + +++.+|
T Consensus 71 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 149 (171)
T 1upt_A 71 YYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILV-VFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTS 149 (171)
T ss_dssp GCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEE-EEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECC
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEE-EEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECc
Confidence 457899999999998653332221 11 233433 3344433110 1221111 1 577899
Q ss_pred hhhHhhHHHHHHHHHHHH
Q 038053 161 EYSKQEISKLMGQMQESY 178 (231)
Q Consensus 161 ~~~~~~i~~l~~~i~~~~ 178 (231)
++++.|+++++..+....
T Consensus 150 a~~~~gi~~l~~~l~~~i 167 (171)
T 1upt_A 150 ATKGTGLDEAMEWLVETL 167 (171)
T ss_dssp TTTCTTHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHH
Confidence 999999999988877643
No 43
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.42 E-value=1.9e-13 Score=104.84 Aligned_cols=138 Identities=14% Similarity=0.070 Sum_probs=84.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
.+|+++|.+|+|||||+|.|++.... .....|.......... .+..+.++||||... +......
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~~~----~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~~~~~ 86 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQFN----EDMIPTVGFNMRKITK-GNVTIKLWDIGGQPR-----------FRSMWER 86 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC----CSCCCCCSEEEEEEEE-TTEEEEEEEECCSHH-----------HHTTHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHcCCCC----CccCCCCceeEEEEEe-CCEEEEEEECCCCHh-----------HHHHHHH
Confidence 79999999999999999999976542 1111222222333333 677889999999643 1111223
Q ss_pred hcCCccEEEEEEECCCCCCHHHHH------h----cCCCCcHHHHHHHHHhh----HHHHHhhc---------cchhhhh
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEEEA------A----NGGQPYTDEFLAELKRG----ATELRDQQ---------AEVDSLK 160 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~~~------~----~~~~~~~~~~~~~~~~~----~~~l~~~~---------~~i~~is 160 (231)
.+..+|++++|+|+++.-+..... . ....|++ .+.++.|.. ..++.+.+ -+++.+|
T Consensus 87 ~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~pii-lv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 165 (188)
T 1zd9_A 87 YCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVL-VLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSIS 165 (188)
T ss_dssp HHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEE-EEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECC
T ss_pred HHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEE-EEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEE
Confidence 346789999999998543322211 1 1233433 344444321 11222211 1467899
Q ss_pred hhhHhhHHHHHHHHHHHH
Q 038053 161 EYSKQEISKLMGQMQESY 178 (231)
Q Consensus 161 ~~~~~~i~~l~~~i~~~~ 178 (231)
|++|.|+++++..+...+
T Consensus 166 A~~g~gv~~l~~~l~~~~ 183 (188)
T 1zd9_A 166 CKEKDNIDITLQWLIQHS 183 (188)
T ss_dssp TTTCTTHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999998887643
No 44
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.41 E-value=4.5e-13 Score=102.26 Aligned_cols=137 Identities=12% Similarity=0.099 Sum_probs=85.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
.+|+++|.+|||||||+|.+++..... .. .|.......... .+..+.++||||... +......
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~~~~~~---~~--~t~~~~~~~~~~-~~~~~~~~Dt~G~~~-----------~~~~~~~ 81 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNGEDVDT---IS--PTLGFNIKTLEH-RGFKLNIWDVGGQKS-----------LRSYWRN 81 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTCCCSS---CC--CCSSEEEEEEEE-TTEEEEEEEECCSHH-----------HHTTGGG
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCc---cc--ccCccceEEEEE-CCEEEEEEECCCCHh-----------HHHHHHH
Confidence 899999999999999999999876211 11 122222333334 678889999999742 1222334
Q ss_pred hcCCccEEEEEEECCCCCCHHHHH------hc----CCCCcHHHHHHHHHhhH----HHHHhhc---------cchhhhh
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEEEA------AN----GGQPYTDEFLAELKRGA----TELRDQQ---------AEVDSLK 160 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~----~~l~~~~---------~~i~~is 160 (231)
.+..+|++++|+|+++..+..+.. .. ...|++ .+.++.|... .++.+.+ -+++.+|
T Consensus 82 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1ksh_A 82 YFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLL-IFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCS 160 (186)
T ss_dssp GCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEE-EEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECC
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEE-EEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEee
Confidence 567899999999998553332211 11 233333 3344443110 1222211 1577899
Q ss_pred hhhHhhHHHHHHHHHHHH
Q 038053 161 EYSKQEISKLMGQMQESY 178 (231)
Q Consensus 161 ~~~~~~i~~l~~~i~~~~ 178 (231)
++++.|+++++..+.+..
T Consensus 161 a~~~~gi~~l~~~l~~~i 178 (186)
T 1ksh_A 161 AVTGEDLLPGIDWLLDDI 178 (186)
T ss_dssp TTTCTTHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999998887654
No 45
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.40 E-value=1.7e-13 Score=105.35 Aligned_cols=142 Identities=13% Similarity=0.079 Sum_probs=81.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEe-eCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG 102 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~ 102 (231)
.+|+|+|.+|+|||||+|.|++...... ..+............. .....+.++||||....... ..
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-----------~~ 92 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNEFSHD--SRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAI-----------TS 92 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCSS--CCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTT-----------HH
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhh-----------hH
Confidence 7899999999999999999998764321 1111111111111111 12346789999998653211 11
Q ss_pred hhcCCccEEEEEEECCCCCCHHHHH------h---cCCCCcHHHHHHHHHhhH------H---HHHhhcc-chhhhhhhh
Q 038053 103 LAKGGIHAVLVVFSVRSRFSQEEEA------A---NGGQPYTDEFLAELKRGA------T---ELRDQQA-EVDSLKEYS 163 (231)
Q Consensus 103 ~~~~~~~~il~vvd~~~~~~~~~~~------~---~~~~~~~~~~~~~~~~~~------~---~l~~~~~-~i~~is~~~ 163 (231)
..+..+|++++|+|+++..+..... . ....|++ .+.++.|... . .+....+ +++.+|+++
T Consensus 93 ~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 171 (193)
T 2oil_A 93 AYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVM-LVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALD 171 (193)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEE-EEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTT
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEE-EEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCC
Confidence 2246789999999998533221111 1 1123332 3334433110 1 1211112 577799999
Q ss_pred HhhHHHHHHHHHHHHH
Q 038053 164 KQEISKLMGQMQESYE 179 (231)
Q Consensus 164 ~~~i~~l~~~i~~~~~ 179 (231)
+.|+++++..+.....
T Consensus 172 ~~gi~~l~~~l~~~i~ 187 (193)
T 2oil_A 172 STNVELAFETVLKEIF 187 (193)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999888776543
No 46
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.40 E-value=7.4e-13 Score=101.27 Aligned_cols=142 Identities=13% Similarity=0.021 Sum_probs=83.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeee-eeeEEeeC-----------CcEEEEEeCCCCcCCCCCch
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCE-MKTTVLKD-----------GQVVNVIDTPGLFDSSAGSE 91 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~-----------~~~~~l~Dtpg~~~~~~~~~ 91 (231)
.+|+|+|.+|+|||||+|.|++...... ..+....... ...... . ...+.++||||...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~Dt~G~~~------ 82 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDGKFNSK--FITTVGIDFREKRVVYR-ANGPDGAVGRGQRIHLQLWDTAGLER------ 82 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCS--CCCCCSEEEEEEEEEEC-TTSCCCSSCCCEEEEEEEEEECCSGG------
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCcC--cccccceeeeeEEEEEe-cCCcccccccCcEEEEEEEeCCCcHH------
Confidence 6999999999999999999998654211 1111111111 111222 2 24788999999753
Q ss_pred HHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH--------hc--CCCCcHHHHHHHHHhhH---------HHHHhh
Q 038053 92 FVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA--------AN--GGQPYTDEFLAELKRGA---------TELRDQ 152 (231)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~--------~~--~~~~~~~~~~~~~~~~~---------~~l~~~ 152 (231)
+.......+..+|++++|+|+++..+..+.. .. ...|++ .+.++.|... ..+...
T Consensus 83 -----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~ 156 (195)
T 3bc1_A 83 -----FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIV-LCGNKSDLEDQRAVKEEEARELAEK 156 (195)
T ss_dssp -----GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEE-EEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred -----HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECcccccccccCHHHHHHHHHH
Confidence 1122334557899999999998533322211 11 233433 3334433110 122222
Q ss_pred cc-chhhhhhhhHhhHHHHHHHHHHHHHH
Q 038053 153 QA-EVDSLKEYSKQEISKLMGQMQESYED 180 (231)
Q Consensus 153 ~~-~i~~is~~~~~~i~~l~~~i~~~~~~ 180 (231)
.+ +++.+|++++.|+++++..+.....+
T Consensus 157 ~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 185 (195)
T 3bc1_A 157 YGIPYFETSAANGTNISHAIEMLLDLIMK 185 (195)
T ss_dssp HTCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 22 67789999999999999888775543
No 47
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.39 E-value=1.8e-13 Score=105.00 Aligned_cols=139 Identities=13% Similarity=0.062 Sum_probs=86.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
.+|+++|.+|+|||||+|.|++...+.. ....|.......... .+..+.++||||...... ....
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~~~~~---~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~-----------~~~~ 86 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSNAQSQ---NILPTIGFSIEKFKS-SSLSFTVFDMSGQGRYRN-----------LWEH 86 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGGGCCS---SCCCCSSEEEEEEEC-SSCEEEEEEECCSTTTGG-----------GGGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCC---CcCCccceeEEEEEE-CCEEEEEEECCCCHHHHH-----------HHHH
Confidence 7999999999999999999999873222 122333333333444 567899999999654211 1123
Q ss_pred hcCCccEEEEEEECCCCCCHHH--HH-----hc-----CCCCcHHHHHHHHHhhH----HHHHhhc---------cchhh
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEE--EA-----AN-----GGQPYTDEFLAELKRGA----TELRDQQ---------AEVDS 158 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~--~~-----~~-----~~~~~~~~~~~~~~~~~----~~l~~~~---------~~i~~ 158 (231)
.+..+|++++|+|+++..+..+ .. .. ...|++ .+.++.|... .++.+.+ -+++.
T Consensus 87 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (190)
T 2h57_A 87 YYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPIL-FFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICA 165 (190)
T ss_dssp GGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEE-EEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEE
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEE-EEEeCcCcccCCCHHHHHHHhChhhccCCceEEEE
Confidence 4467899999999985422222 11 11 234443 3444443211 1222211 15778
Q ss_pred hhhhhHhhHHHHHHHHHHHH
Q 038053 159 LKEYSKQEISKLMGQMQESY 178 (231)
Q Consensus 159 is~~~~~~i~~l~~~i~~~~ 178 (231)
+|++++.|+++++..+.+..
T Consensus 166 ~Sa~~~~gi~~l~~~l~~~i 185 (190)
T 2h57_A 166 SDAIKGEGLQEGVDWLQDQI 185 (190)
T ss_dssp CBTTTTBTHHHHHHHHHHHC
T ss_pred ccCCCCcCHHHHHHHHHHHH
Confidence 99999999999998887654
No 48
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.39 E-value=4.4e-13 Score=103.80 Aligned_cols=143 Identities=12% Similarity=0.068 Sum_probs=83.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEee-CCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG 102 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~ 102 (231)
.+|+|+|.+|+|||||+|.|++...... ..+.............. ....+.++||||.... .....
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-----------~~~~~ 75 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDSFTPA--FVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERY-----------RTITT 75 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCCSC--CCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG-----------HHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCC--cCCccceeEEEEEEEECCeEEEEEEEECCCchhh-----------cchHH
Confidence 6899999999999999999998764221 11111222222222220 1346789999997531 11233
Q ss_pred hhcCCccEEEEEEECCCCCCHHHHH--------hc-CCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhhhh
Q 038053 103 LAKGGIHAVLVVFSVRSRFSQEEEA--------AN-GGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKEYS 163 (231)
Q Consensus 103 ~~~~~~~~il~vvd~~~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~~~ 163 (231)
..+..+|++++|+|+++..+..... .. ...|++ .+.++.|.. ...+....+ +++.+|+++
T Consensus 76 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 154 (203)
T 1zbd_A 76 AYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVL-LVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKD 154 (203)
T ss_dssp TTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEE-EEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTT
T ss_pred HhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEE-EEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCC
Confidence 4457789999999998532222111 11 223333 333443310 012222222 677899999
Q ss_pred HhhHHHHHHHHHHHHHH
Q 038053 164 KQEISKLMGQMQESYED 180 (231)
Q Consensus 164 ~~~i~~l~~~i~~~~~~ 180 (231)
|.|+++++..+.....+
T Consensus 155 ~~gi~~l~~~l~~~i~~ 171 (203)
T 1zbd_A 155 NINVKQTFERLVDVICE 171 (203)
T ss_dssp TBSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999888775543
No 49
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.39 E-value=4.2e-13 Score=102.84 Aligned_cols=142 Identities=12% Similarity=0.078 Sum_probs=82.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEee-CCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG 102 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~ 102 (231)
.+|+|+|.+|+|||||+|.|++...........+.+. ........ ....+.++||||....... ..
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-----------~~ 89 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDF--KVKTVYRHDKRIKLQIWDTAGQERYRTI-----------TT 89 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEE--EEEEEEETTEEEEEEEEECCSCCSSCCS-----------GG
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEE--EEEEEEECCeEEEEEEEeCCCcHHHhhh-----------HH
Confidence 6999999999999999999998764221111122222 11222220 2346789999997543211 22
Q ss_pred hhcCCccEEEEEEECCCCCCHHHHH--------hc-CCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhhhh
Q 038053 103 LAKGGIHAVLVVFSVRSRFSQEEEA--------AN-GGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKEYS 163 (231)
Q Consensus 103 ~~~~~~~~il~vvd~~~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~~~ 163 (231)
..+..+|++++|+|+++..+..... .. ...|++ .+.++.|.. ...+....+ +++.+|+++
T Consensus 90 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 168 (189)
T 2gf9_A 90 AYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVI-LVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKE 168 (189)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEE-EEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTT
T ss_pred HhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEE-EEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCC
Confidence 3457889999999997532222111 11 233333 233333310 012222222 677899999
Q ss_pred HhhHHHHHHHHHHHHH
Q 038053 164 KQEISKLMGQMQESYE 179 (231)
Q Consensus 164 ~~~i~~l~~~i~~~~~ 179 (231)
+.|+++++..+.....
T Consensus 169 g~gi~~l~~~l~~~i~ 184 (189)
T 2gf9_A 169 NINVKQVFERLVDVIC 184 (189)
T ss_dssp TBSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999988877543
No 50
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.39 E-value=1.3e-12 Score=99.41 Aligned_cols=141 Identities=13% Similarity=0.104 Sum_probs=84.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
.+|+++|.+|||||||+|.+++...... ..+..+.......... .+ ..+.++||||... +....
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~-----------~~~~~ 76 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKKFKDD--SNHTIGVEFGSKIINV-GGKYVKLQIWDTAGQER-----------FRSVT 76 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCTT--CCCCSEEEEEEEEEEE-TTEEEEEEEEEECCSGG-----------GHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC--CCCccceEEEEEEEEE-CCEEEEEEEEeCCCcHH-----------HHHHH
Confidence 7999999999999999999998764221 2222332222222333 33 4678999999653 11223
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH--------h-cCCCCcHHHHHHHHHhhH------H---HHHhhcc-chhhhhhh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------A-NGGQPYTDEFLAELKRGA------T---ELRDQQA-EVDSLKEY 162 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~------~---~l~~~~~-~i~~is~~ 162 (231)
...+..+|++++|+|+++..+..... . ....|++ .+.++.|... . .+....+ +++.+|++
T Consensus 77 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 155 (186)
T 2bme_A 77 RSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVII-LCGNKKDLDADREVTFLEASRFAQENELMFLETSAL 155 (186)
T ss_dssp HTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEE-EEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEE-EEEECcccccccccCHHHHHHHHHHcCCEEEEecCC
Confidence 44567899999999998532221111 1 2233333 3334443210 1 1111112 56778999
Q ss_pred hHhhHHHHHHHHHHHHH
Q 038053 163 SKQEISKLMGQMQESYE 179 (231)
Q Consensus 163 ~~~~i~~l~~~i~~~~~ 179 (231)
++.|+++++..+.....
T Consensus 156 ~~~gi~~l~~~l~~~~~ 172 (186)
T 2bme_A 156 TGENVEEAFVQCARKIL 172 (186)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999888776543
No 51
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.39 E-value=2.5e-13 Score=101.66 Aligned_cols=139 Identities=14% Similarity=0.111 Sum_probs=78.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEee-CCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG 102 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~ 102 (231)
.+|+++|.+|+|||||+|.|++...........+.+. ........ ....+.++||||..... ....
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~D~~G~~~~~-----------~~~~ 73 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAF--LTQTVCLDDTTVKFEIWDTAGQERYH-----------SLAP 73 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEE--EEEEEEETTEEEEEEEEEECCSGGGG-----------GGHH
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEE--EEEEEEECCEEEEEEEEeCCCcHHhh-----------hhhH
Confidence 6899999999999999999997653211111112221 11112221 24567899999965411 1112
Q ss_pred hhcCCccEEEEEEECCCCCCHHHHH--------h-cCCCCcHHHHHHHHHhhH------H---HHHhhcc-chhhhhhhh
Q 038053 103 LAKGGIHAVLVVFSVRSRFSQEEEA--------A-NGGQPYTDEFLAELKRGA------T---ELRDQQA-EVDSLKEYS 163 (231)
Q Consensus 103 ~~~~~~~~il~vvd~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~------~---~l~~~~~-~i~~is~~~ 163 (231)
..+..+|++++|+|+++..+..... . ....|++ .+.++.|... . .+....+ +++.+|+++
T Consensus 74 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 152 (170)
T 1r2q_A 74 MYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIA-LSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKT 152 (170)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEE-EEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTT
T ss_pred HhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEE-EEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCC
Confidence 2346789999999998543222211 1 1122222 2224433110 1 1211122 567789999
Q ss_pred HhhHHHHHHHHHH
Q 038053 164 KQEISKLMGQMQE 176 (231)
Q Consensus 164 ~~~i~~l~~~i~~ 176 (231)
|.|+++++..+.+
T Consensus 153 g~gi~~l~~~i~~ 165 (170)
T 1r2q_A 153 SMNVNEIFMAIAK 165 (170)
T ss_dssp CTTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 9999999888765
No 52
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.39 E-value=1.9e-12 Score=98.71 Aligned_cols=142 Identities=18% Similarity=0.193 Sum_probs=81.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCc--EEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
.+|+++|.+|||||||+|.|++.... ....+++.......... .+. .+.++||||....... ..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~--------~~-- 70 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNHFV---DEYDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYSAM--------RD-- 70 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCC---CCCCTTCCEEEEEEEEE-TTEEEEEEEEECCCC---CTT--------HH--
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCC---CCCCCCchheEEEEEEE-CCcEEEEEEEECCCcHHHHHH--------HH--
Confidence 78999999999999999999987642 12222232222222222 343 3667999996543211 11
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH----------hcCCCCcHHHHHHHHHhh--------HHHHHhhcc-chhhhhhh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA----------ANGGQPYTDEFLAELKRG--------ATELRDQQA-EVDSLKEY 162 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~--------~~~l~~~~~-~i~~is~~ 162 (231)
..+..+|++++|+|+++.-+..... .....|++ .+.++.|.. ...+....+ +++.+|+.
T Consensus 71 -~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 148 (189)
T 4dsu_A 71 -QYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMV-LVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAK 148 (189)
T ss_dssp -HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEE-EEEECTTSSSCSSCHHHHHHHHHHHTCCEEECCTT
T ss_pred -HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE-EEEECccCcccccCHHHHHHHHHHcCCeEEEEeCC
Confidence 1123469999999998532222211 11233433 333443311 012222222 67789999
Q ss_pred hHhhHHHHHHHHHHHHHHH
Q 038053 163 SKQEISKLMGQMQESYEDQ 181 (231)
Q Consensus 163 ~~~~i~~l~~~i~~~~~~~ 181 (231)
+|.|+++++..+...+...
T Consensus 149 ~g~gi~~l~~~l~~~~~~~ 167 (189)
T 4dsu_A 149 TRQGVDDAFYTLVREIRKH 167 (189)
T ss_dssp TCTTHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999998887765443
No 53
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.38 E-value=6.3e-13 Score=99.11 Aligned_cols=136 Identities=11% Similarity=0.057 Sum_probs=82.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhh
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLA 104 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~ 104 (231)
+|+++|.+|+|||||+|.+++...... .+ |.......... .+..+.++||||.... .......
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~~~---~~--t~~~~~~~~~~-~~~~~~i~Dt~G~~~~-----------~~~~~~~ 64 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIVTT---IP--TIGFNVETVEY-KNISFTVWDVGGQDKI-----------RPLWRHY 64 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSCC---CC--CSSCCEEEEEC-SSCEEEEEECCCCGGG-----------HHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcCcc---cC--cCceeEEEEEE-CCEEEEEEEcCCChhh-----------HHHHHHH
Confidence 799999999999999999987653211 11 22222222333 5678899999997541 1122234
Q ss_pred cCCccEEEEEEECCCCCCHHHHH------hc----CCCCcHHHHHHHHHhhH----HHHHhhcc---------chhhhhh
Q 038053 105 KGGIHAVLVVFSVRSRFSQEEEA------AN----GGQPYTDEFLAELKRGA----TELRDQQA---------EVDSLKE 161 (231)
Q Consensus 105 ~~~~~~il~vvd~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~----~~l~~~~~---------~i~~is~ 161 (231)
+..+|++++|+|+++.-+..... .. ...|++ .+.++.|... ..+..... +++.+|+
T Consensus 65 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 143 (164)
T 1r8s_A 65 FQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLL-VFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCA 143 (164)
T ss_dssp TTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEE-EEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBT
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEE-EEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEccc
Confidence 57889999999998542222211 11 123333 3334433110 12222111 4677999
Q ss_pred hhHhhHHHHHHHHHHHH
Q 038053 162 YSKQEISKLMGQMQESY 178 (231)
Q Consensus 162 ~~~~~i~~l~~~i~~~~ 178 (231)
+++.|+++++..+....
T Consensus 144 ~~~~gi~~l~~~l~~~i 160 (164)
T 1r8s_A 144 TSGDGLYEGLDWLSNQL 160 (164)
T ss_dssp TTTBTHHHHHHHHHHHC
T ss_pred CCCcCHHHHHHHHHHHH
Confidence 99999999998887643
No 54
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.38 E-value=3.8e-13 Score=103.61 Aligned_cols=142 Identities=13% Similarity=0.139 Sum_probs=82.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC-------------------------------
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG------------------------------- 72 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~------------------------------- 72 (231)
.+|+++|.+|+|||||+|.|++...... ..+.+........... .+
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKDTFHEN--TNTTIGASFCTYVVNL-NDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSS--CCCCCSCEEEEEEEET-TC-------------------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCC--cCccccceeEEEEEEe-cCccccccccccccccccccccccccccccccc
Confidence 7999999999999999999998864211 1111111111111111 11
Q ss_pred --------cEEEEEeCCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH-------hcCCCCcHHH
Q 038053 73 --------QVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA-------ANGGQPYTDE 137 (231)
Q Consensus 73 --------~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~-------~~~~~~~~~~ 137 (231)
..+.++||||...... .....+..+|++++|+|+++..+..+.. .....|++ .
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~-----------~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~pii-l 152 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYAS-----------IVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIII-L 152 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTT-----------THHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEE-E
T ss_pred cccCccceeEEEEEECCCcHHHHH-----------HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEE-E
Confidence 5788999999654221 1122346789999999998543322211 11123332 3
Q ss_pred HHHHHHhhH-----HHHHhh---cc-chhhhhhhhHhhHHHHHHHHHHHHHH
Q 038053 138 FLAELKRGA-----TELRDQ---QA-EVDSLKEYSKQEISKLMGQMQESYED 180 (231)
Q Consensus 138 ~~~~~~~~~-----~~l~~~---~~-~i~~is~~~~~~i~~l~~~i~~~~~~ 180 (231)
++++.|... .++... .+ +++.+|++++.|+++++..+.....+
T Consensus 153 v~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 153 VANKIDKNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp EEECTTCC-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred EEECCCcccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 334433110 122222 12 67789999999999999888765433
No 55
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.38 E-value=8.8e-12 Score=105.42 Aligned_cols=148 Identities=14% Similarity=0.136 Sum_probs=85.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
..|+|+|+||||||||+|.|+|..... ...++.|.+........ .+..+.++||||+..... ..+.+.+...+ .
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~~~~~--~~~~~~T~d~~~~~i~~-~g~~v~l~DT~G~i~~lp--~~lve~f~~tl-~ 253 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGLTQKV--DTKLFTTMSPKRYAIPI-NNRKIMLVDTVGFIRGIP--PQIVDAFFVTL-S 253 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEEE-TTEEEEEEECCCBCSSCC--GGGHHHHHHHH-H
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCccc--cCCcccccCCEEEEEEE-CCEEEEEEeCCCchhcCC--HHHHHHHHHHH-H
Confidence 359999999999999999999987532 23455666555555555 677889999999865321 22333333333 3
Q ss_pred hcCCccEEEEEEECCCCC--CHHHHH--------h-cCCCCcHHHHHHHHHhhH-------H---HHHhhc----cchhh
Q 038053 104 AKGGIHAVLVVFSVRSRF--SQEEEA--------A-NGGQPYTDEFLAELKRGA-------T---ELRDQQ----AEVDS 158 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~--~~~~~~--------~-~~~~~~~~~~~~~~~~~~-------~---~l~~~~----~~i~~ 158 (231)
.+..+|.+++|+|+++.. ...... . ....|.+ .++++.+... . .+...+ .++++
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~i-lV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 332 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPIL-VTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIP 332 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEE-EEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEE
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEE-EEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 457889999999998543 111110 1 1233422 2233333100 0 111222 15678
Q ss_pred hhhhhHhhHHHHHHHHHHHH
Q 038053 159 LKEYSKQEISKLMGQMQESY 178 (231)
Q Consensus 159 is~~~~~~i~~l~~~i~~~~ 178 (231)
+|++++.|++.++..+.+.+
T Consensus 333 ~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 333 ISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp CBTTTTBSHHHHHHHHHHHH
T ss_pred EECCCCcCHHHHHHHHHHHh
Confidence 99999999999999887754
No 56
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.38 E-value=1.1e-12 Score=99.81 Aligned_cols=140 Identities=20% Similarity=0.203 Sum_probs=81.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
.+|+++|.+|+|||||+|.|++.... ....+++.......... .+ ..+.++||||.... .. +.
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~----~~----~~--- 83 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDEFV---EDYEPTKADSYRKKVVL-DGEEVQIDILDTAGQEDY----AA----IR--- 83 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC---CSCCTTCCEEEEEEEEE-TTEEEEEEEEECCCTTCC----HH----HH---
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCCC---CcCCCccceEEEEEEEE-CCEEEEEEEEECCCCccc----HH----HH---
Confidence 79999999999999999999987632 11222222222222222 33 36789999996542 11 11
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH---------h-cCCCCcHHHHHHHHHhhH------HHHHh---hcc-chhhhhh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA---------A-NGGQPYTDEFLAELKRGA------TELRD---QQA-EVDSLKE 161 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~---------~-~~~~~~~~~~~~~~~~~~------~~l~~---~~~-~i~~is~ 161 (231)
...+..+|++++|+|+++..+..... . ....|++ .+.++.|... .++.. ..+ +++.+|+
T Consensus 84 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (187)
T 2a9k_A 84 DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL-LVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSA 162 (187)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEE-EEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCT
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECccccccCccCHHHHHHHHHHcCCeEEEeCC
Confidence 11224579999999998432211111 1 1234443 3344443110 12221 122 6778999
Q ss_pred hhHhhHHHHHHHHHHHHH
Q 038053 162 YSKQEISKLMGQMQESYE 179 (231)
Q Consensus 162 ~~~~~i~~l~~~i~~~~~ 179 (231)
+++.|+++++..+.....
T Consensus 163 ~~~~gi~~l~~~l~~~i~ 180 (187)
T 2a9k_A 163 KTRANVDKVFFDLMREIR 180 (187)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999888877543
No 57
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.37 E-value=7.3e-13 Score=101.75 Aligned_cols=142 Identities=18% Similarity=0.151 Sum_probs=85.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
.+|+++|.+|+|||||+|.|++...... ..+..+.+........ .+ ..+.++||||...... ..
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~-----------~~ 82 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDTYTES--YISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRT-----------IT 82 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSC--CCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGCT-----------TH
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCC--CCCcccceEEEEEEEE-CCEEEEEEEEECCCcHhhhh-----------hH
Confidence 7899999999999999999998764221 2333444333333333 44 4678999999654221 01
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhhh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKEY 162 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~~ 162 (231)
...+..+|++++|+|+++..+..... .....|++ .+.++.|.. ...+....+ +++.+|++
T Consensus 83 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (196)
T 3tkl_A 83 SSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKL-LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAK 161 (196)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEE-EEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTT
T ss_pred HHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEE-EEEECcccccccccCHHHHHHHHHHcCCcEEEEeCC
Confidence 12336789999999998532211111 11123333 233443311 012222222 67889999
Q ss_pred hHhhHHHHHHHHHHHHHH
Q 038053 163 SKQEISKLMGQMQESYED 180 (231)
Q Consensus 163 ~~~~i~~l~~~i~~~~~~ 180 (231)
++.|+++++..+...+.+
T Consensus 162 ~g~gv~~l~~~l~~~i~~ 179 (196)
T 3tkl_A 162 NATNVEQSFMTMAAEIKK 179 (196)
T ss_dssp TCTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999998888775443
No 58
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.37 E-value=2.4e-13 Score=101.83 Aligned_cols=140 Identities=17% Similarity=0.091 Sum_probs=79.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEee-CCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG 102 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~ 102 (231)
.+|+++|.+|+|||||+|.+++...........+.+.. ....... ....+.++||||..... ....
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~Dt~G~~~~~-----------~~~~ 73 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFM--TKTVQYQNELHKFLIWDTAGLERFR-----------ALAP 73 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEE--EEEEEETTEEEEEEEEEECCSGGGG-----------GGTH
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEE--EEEEEECCeEEEEEEEcCCCchhhh-----------cccH
Confidence 68999999999999999999987642111112222221 1112220 23567899999975311 1111
Q ss_pred hhcCCccEEEEEEECCCCCCHHHHH--------h-cCCCCcHHHHHHHHHhh---------HHHHHhhc-cchhhhhhhh
Q 038053 103 LAKGGIHAVLVVFSVRSRFSQEEEA--------A-NGGQPYTDEFLAELKRG---------ATELRDQQ-AEVDSLKEYS 163 (231)
Q Consensus 103 ~~~~~~~~il~vvd~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~---------~~~l~~~~-~~i~~is~~~ 163 (231)
..+..+|++++|+|+++..+..... . ....|++ .+.++.|.. ...+.... .+++.+|+++
T Consensus 74 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~ii-lv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 152 (170)
T 1z0j_A 74 MYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVA-IAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKN 152 (170)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEE-EEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTT
T ss_pred hhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEE-EEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCC
Confidence 2346779999999998543322211 1 1122222 222333210 01222222 2677899999
Q ss_pred HhhHHHHHHHHHHH
Q 038053 164 KQEISKLMGQMQES 177 (231)
Q Consensus 164 ~~~i~~l~~~i~~~ 177 (231)
+.|+++++..+.+.
T Consensus 153 ~~~i~~l~~~i~~~ 166 (170)
T 1z0j_A 153 AININELFIEISRR 166 (170)
T ss_dssp TBSHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHH
Confidence 99999998887653
No 59
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.37 E-value=3.9e-13 Score=103.38 Aligned_cols=141 Identities=14% Similarity=0.070 Sum_probs=81.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
.+|+++|.+|+|||||+|.|++...........+.+.......... ....+.++||||...... + ...
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~--------~---~~~ 91 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGN-ELHKFLIWDTAGQERFHS--------L---APM 91 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSS-SEEEEEEEEECCSGGGGG--------G---THH
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCC-EEEEEEEEcCCCchhhHh--------h---hHH
Confidence 7899999999999999999998763211112222222211111111 345688999999654211 0 112
Q ss_pred hcCCccEEEEEEECCCCCCHHHHH--------h-cCCCCcHHHHHHHHHhh------HHHHHh---hcc-chhhhhhhhH
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEEEA--------A-NGGQPYTDEFLAELKRG------ATELRD---QQA-EVDSLKEYSK 164 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~------~~~l~~---~~~-~i~~is~~~~ 164 (231)
.+..+|++++|+|+++..+..... . ....|++ .+.++.|.. ..++.. ..+ +++.+|++++
T Consensus 92 ~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-iv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 170 (192)
T 2fg5_A 92 YYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMA-IAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNA 170 (192)
T ss_dssp HHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEE-EEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTT
T ss_pred hhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEE-EEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCC
Confidence 336789999999998543322211 1 1133333 333443311 012222 222 6778999999
Q ss_pred hhHHHHHHHHHHH
Q 038053 165 QEISKLMGQMQES 177 (231)
Q Consensus 165 ~~i~~l~~~i~~~ 177 (231)
.|+++++..+.+.
T Consensus 171 ~gi~~l~~~l~~~ 183 (192)
T 2fg5_A 171 INIEELFQGISRQ 183 (192)
T ss_dssp BSHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHH
Confidence 9999999888764
No 60
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.37 E-value=3.6e-13 Score=102.35 Aligned_cols=137 Identities=13% Similarity=0.116 Sum_probs=82.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
.+|+++|++|||||||+|.+++.......+.. +.+ ...... .+..+.++||||....... ...
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~-~~~----~~~~~~-~~~~~~i~Dt~G~~~~~~~-----------~~~ 81 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQIGEVVTTKPTI-GFN----VETLSY-KNLKLNVWDLGGQTSIRPY-----------WRC 81 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCSEEEEECSST-TCC----EEEEEE-TTEEEEEEEEC----CCTT-----------GGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCcCccCCcC-ccc----eEEEEE-CCEEEEEEECCCCHhHHHH-----------HHH
Confidence 89999999999999999999976543222221 211 222333 5678889999998653211 123
Q ss_pred hcCCccEEEEEEECCCCCCHHHHH------h----cCCCCcHHHHHHHHHhh----HHHHHhhcc---------chhhhh
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEEEA------A----NGGQPYTDEFLAELKRG----ATELRDQQA---------EVDSLK 160 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~~~------~----~~~~~~~~~~~~~~~~~----~~~l~~~~~---------~i~~is 160 (231)
.+..+|++++|+|+++..+..... . ....|++ .+.++.|.. ..++.+.+. +++.+|
T Consensus 82 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S 160 (183)
T 1moz_A 82 YYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALL-VFANKQDQPGALSASEVSKELNLVELKDRSWSIVASS 160 (183)
T ss_dssp TTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEE-EEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEB
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEE-EEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEcc
Confidence 457889999999998654433222 1 1233333 344444411 122322221 567899
Q ss_pred hhhHhhHHHHHHHHHHHH
Q 038053 161 EYSKQEISKLMGQMQESY 178 (231)
Q Consensus 161 ~~~~~~i~~l~~~i~~~~ 178 (231)
++++.|+++++..+.+..
T Consensus 161 a~~~~gi~~l~~~l~~~~ 178 (183)
T 1moz_A 161 AIKGEGITEGLDWLIDVI 178 (183)
T ss_dssp GGGTBTHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHH
Confidence 999999999998887754
No 61
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.37 E-value=2.4e-13 Score=102.68 Aligned_cols=139 Identities=12% Similarity=0.110 Sum_probs=79.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeC--CcEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
.+|+++|.+|+|||||+|.|++...........+.+. ....... . ...+.++||||..... . . .
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~-~~~~~~~~l~Dt~G~~~~~----~---~----~ 81 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEF--GTRIIEV-SGQKIKLQIWDTAGQERFR----A---V----T 81 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCE--EEEEEEE-TTEEEEEEEEECTTGGGTC----H---H----H
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEE--EEEEEEE-CCeEEEEEEEECCCChHhh----h---h----H
Confidence 7999999999999999999998764211111111121 1112222 2 2467899999965421 1 1 1
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH--------h-cCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhhh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------A-NGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKEY 162 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~~ 162 (231)
...+..+|++++|+|+++..+..+.. . ....|++ .+.++.|.. ...+....+ +++.+|++
T Consensus 82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 160 (179)
T 1z0f_A 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVII-LIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAK 160 (179)
T ss_dssp HHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEE-EEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred HHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEE-EEEECcccccccccCHHHHHHHHHHcCCEEEEEeCC
Confidence 22235679999999998542222211 1 1223332 233333311 012211122 67788999
Q ss_pred hHhhHHHHHHHHHHH
Q 038053 163 SKQEISKLMGQMQES 177 (231)
Q Consensus 163 ~~~~i~~l~~~i~~~ 177 (231)
++.|+++++..+.+.
T Consensus 161 ~~~gi~~l~~~l~~~ 175 (179)
T 1z0f_A 161 TGENVEDAFLEAAKK 175 (179)
T ss_dssp TCTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999998887664
No 62
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.37 E-value=9.2e-13 Score=110.39 Aligned_cols=41 Identities=22% Similarity=0.168 Sum_probs=36.4
Q ss_pred CCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 038053 4 GMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGR 46 (231)
Q Consensus 4 ~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~ 46 (231)
.|+...+++++++.+.+| .+++|+|+||||||||+|.|+|.
T Consensus 38 ~~~~~~~l~~i~~~~~~g--~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 38 RAAVRDLIDAVLPQTGRA--IRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp HHHHHHHHHHHGGGCCCS--EEEEEECCTTSCHHHHHHHHHHH
T ss_pred ccChHHHHHhCCcccCCC--eEEEEECCCCCCHHHHHHHHHHh
Confidence 345567889999999999 99999999999999999999854
No 63
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.37 E-value=1e-12 Score=98.02 Aligned_cols=139 Identities=20% Similarity=0.206 Sum_probs=78.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
.+|+++|.+|+|||||+|.+++..... ...+++.......... .+ ..+.++||||.... .. + .
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~~~~---~~~~t~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~----~~----~---~ 69 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDEFVE---DYEPTKADSYRKKVVL-DGEEVQIDILDTAGQEDY----AA----I---R 69 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCS---CCCTTCCEEEEEEEEE-TTEEEEEEEEECCC---C----HH----H---H
T ss_pred EEEEEECCCCCCHHHHHHHHHhCccCC---CCCCCcceEEEEEEEE-CCEEEEEEEEECCCcchh----HH----H---H
Confidence 789999999999999999999876321 1222222222222222 33 36789999996531 11 1 1
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH---------h-cCCCCcHHHHHHHHHhhH------HHHHh---hcc-chhhhhh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA---------A-NGGQPYTDEFLAELKRGA------TELRD---QQA-EVDSLKE 161 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~---------~-~~~~~~~~~~~~~~~~~~------~~l~~---~~~-~i~~is~ 161 (231)
...+..+|++++|+|+++..+..... . ....|++ .+.++.|... .++.. ..+ +++.+|+
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 148 (168)
T 1u8z_A 70 DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL-LVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSA 148 (168)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEE-EEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCT
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE-EEEECccccccCccCHHHHHHHHHHcCCeEEEeCC
Confidence 12234579999999998432222111 1 1234443 3344443110 11111 112 6778999
Q ss_pred hhHhhHHHHHHHHHHHH
Q 038053 162 YSKQEISKLMGQMQESY 178 (231)
Q Consensus 162 ~~~~~i~~l~~~i~~~~ 178 (231)
++|.|+++++..+....
T Consensus 149 ~~~~gi~~l~~~l~~~i 165 (168)
T 1u8z_A 149 KTRANVDKVFFDLMREI 165 (168)
T ss_dssp TTCTTHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999988876643
No 64
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.37 E-value=8.6e-13 Score=100.63 Aligned_cols=138 Identities=15% Similarity=0.133 Sum_probs=83.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053 23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG 102 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~ 102 (231)
..+|+++|++|||||||+|.+++.......+.. +.+ ...... .+..+.++||||.... .....
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~-g~~----~~~~~~-~~~~l~i~Dt~G~~~~-----------~~~~~ 78 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASEDISHITPTQ-GFN----IKSVQS-QGFKLNVWDIGGQRKI-----------RPYWR 78 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCSCCEEEEEET-TEE----EEEEEE-TTEEEEEEECSSCGGG-----------HHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcccCcC-CeE----EEEEEE-CCEEEEEEECCCCHHH-----------HHHHH
Confidence 379999999999999999999988542222221 211 222333 5778889999996531 11122
Q ss_pred hhcCCccEEEEEEECCCCCCHHHHH------h----cCCCCcHHHHHHHHHhhH----HHHHhhc---------cchhhh
Q 038053 103 LAKGGIHAVLVVFSVRSRFSQEEEA------A----NGGQPYTDEFLAELKRGA----TELRDQQ---------AEVDSL 159 (231)
Q Consensus 103 ~~~~~~~~il~vvd~~~~~~~~~~~------~----~~~~~~~~~~~~~~~~~~----~~l~~~~---------~~i~~i 159 (231)
..+..+|++++|+|+++.-+..... . ....|++ .+.++.|... .++.+.+ -+++.+
T Consensus 79 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-lv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
T 1fzq_A 79 SYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVL-IFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSC 157 (181)
T ss_dssp HHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEE-EEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEEC
T ss_pred HHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEE-EEEECcCcccCCCHHHHHHHhCchhccCCceEEEEc
Confidence 3346789999999998543322211 1 1233433 3334433210 1222211 146778
Q ss_pred hhhhHhhHHHHHHHHHHHH
Q 038053 160 KEYSKQEISKLMGQMQESY 178 (231)
Q Consensus 160 s~~~~~~i~~l~~~i~~~~ 178 (231)
||++|.|+++++..+.+..
T Consensus 158 Sa~~g~gi~~l~~~l~~~~ 176 (181)
T 1fzq_A 158 SALTGEGVQDGMNWVCKNV 176 (181)
T ss_dssp CTTTCTTHHHHHHHHHHTC
T ss_pred cCCCCCCHHHHHHHHHHHH
Confidence 9999999999998886643
No 65
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.36 E-value=9.7e-13 Score=99.51 Aligned_cols=141 Identities=17% Similarity=0.185 Sum_probs=81.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHH
Q 038053 23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKR 100 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~ 100 (231)
..+|+++|.+|+|||||+|.|++.... ....+++.......... .+ ..+.++||||....... . ..
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~~~~---~~~~~t~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~----~---~~- 76 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQSYFV---SDYDPTIEDSYTKICSV-DGIPARLDILDTAGQEEFGAM----R---EQ- 76 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC---SSCCTTCCEEEEEEEEE-TTEEEEEEEEECCCTTTTSCC----H---HH-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCc---cccCCCcCceEEEEEEE-CCEEEEEEEEECCCchhhHHH----H---HH-
Confidence 479999999999999999999987531 12222222221222222 33 36778999997643211 1 11
Q ss_pred HhhhcCCccEEEEEEECCCCCCHHHHH----------hcCCCCcHHHHHHHHHhhH---------HHHHhhcc-chhhhh
Q 038053 101 IGLAKGGIHAVLVVFSVRSRFSQEEEA----------ANGGQPYTDEFLAELKRGA---------TELRDQQA-EVDSLK 160 (231)
Q Consensus 101 ~~~~~~~~~~il~vvd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~---------~~l~~~~~-~i~~is 160 (231)
.+..+|++++|+|+++..+..... .....|++ .+.++.|... ..+..... +++.+|
T Consensus 77 ---~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 152 (181)
T 2fn4_A 77 ---YMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVV-LVGNKADLESQRQVPRSEASAFGASHHVAYFEAS 152 (181)
T ss_dssp ---HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEE-EEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECB
T ss_pred ---HHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECcccccccccCHHHHHHHHHHcCCeEEEec
Confidence 123469999999998532211111 12233443 3344443110 12211112 577899
Q ss_pred hhhHhhHHHHHHHHHHHHH
Q 038053 161 EYSKQEISKLMGQMQESYE 179 (231)
Q Consensus 161 ~~~~~~i~~l~~~i~~~~~ 179 (231)
+++|.|+++++..+.....
T Consensus 153 a~~~~gv~~l~~~l~~~~~ 171 (181)
T 2fn4_A 153 AKLRLNVDEAFEQLVRAVR 171 (181)
T ss_dssp TTTTBSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999988877543
No 66
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.35 E-value=8.3e-14 Score=109.40 Aligned_cols=83 Identities=13% Similarity=0.062 Sum_probs=61.0
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCC
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTP 81 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtp 81 (231)
++.|++ .++++++|++++| .+++|+|+||||||||+++|+|...+. .|.+........ .. .....++++.|
T Consensus 17 s~~y~~-~il~~vsl~i~~G--e~~~iiG~NGsGKSTLlk~l~Gl~~p~----~G~I~~~g~~~~-~~-~~~i~~v~q~~ 87 (214)
T 1sgw_A 17 SVGYDK-PVLERITMTIEKG--NVVNFHGPNGIGKTTLLKTISTYLKPL----KGEIIYNGVPIT-KV-KGKIFFLPEEI 87 (214)
T ss_dssp EEESSS-EEEEEEEEEEETT--CCEEEECCTTSSHHHHHHHHTTSSCCS----EEEEEETTEEGG-GG-GGGEEEECSSC
T ss_pred EEEeCC-eEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCC----CeEEEECCEEhh-hh-cCcEEEEeCCC
Confidence 567888 8999999999999 999999999999999999999998743 332322111100 11 34578899999
Q ss_pred CCcCCCCCchHH
Q 038053 82 GLFDSSAGSEFV 93 (231)
Q Consensus 82 g~~~~~~~~~~~ 93 (231)
.+++..++.+++
T Consensus 88 ~~~~~~tv~enl 99 (214)
T 1sgw_A 88 IVPRKISVEDYL 99 (214)
T ss_dssp CCCTTSBHHHHH
T ss_pred cCCCCCCHHHHH
Confidence 887765554444
No 67
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.35 E-value=1.7e-12 Score=100.44 Aligned_cols=141 Identities=20% Similarity=0.192 Sum_probs=81.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHH
Q 038053 23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKR 100 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~ 100 (231)
..+|+|+|.+|||||||+|.|++.... ....+++.......... .+ ..+.++||||..... . +.
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~----~----~~-- 79 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYDEFV---EDYEPTKADSYRKKVVL-DGEEVQIDILDTAGQEDYA----A----IR-- 79 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC---TTCCTTCCEEEEEEEEE-TTEEEEEEEEECCCTTCCH----H----HH--
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCCC---CCCCCccceEEEEEEEE-CCEEEEEEEEcCCChhhhH----H----HH--
Confidence 379999999999999999999987632 12222222222222222 33 367899999965421 1 11
Q ss_pred HhhhcCCccEEEEEEECCCCCCHHHHH--------h--cCCCCcHHHHHHHHHhhH------HH---HHhhcc-chhhhh
Q 038053 101 IGLAKGGIHAVLVVFSVRSRFSQEEEA--------A--NGGQPYTDEFLAELKRGA------TE---LRDQQA-EVDSLK 160 (231)
Q Consensus 101 ~~~~~~~~~~il~vvd~~~~~~~~~~~--------~--~~~~~~~~~~~~~~~~~~------~~---l~~~~~-~i~~is 160 (231)
...+..+|++++|+|+++..+..... . ....|++ .+.++.|... .. +....+ +++.+|
T Consensus 80 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (206)
T 2bov_A 80 -DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL-LVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETS 157 (206)
T ss_dssp -HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEE-EEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEC
T ss_pred -HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEeccCccccccccHHHHHHHHHHhCCeEEEEe
Confidence 11224579999999998432211111 1 1234443 3334433110 11 211122 677899
Q ss_pred hhhHhhHHHHHHHHHHHHH
Q 038053 161 EYSKQEISKLMGQMQESYE 179 (231)
Q Consensus 161 ~~~~~~i~~l~~~i~~~~~ 179 (231)
+++|.|+++++..+.....
T Consensus 158 a~~g~gi~~l~~~l~~~i~ 176 (206)
T 2bov_A 158 AKTRANVDKVFFDLMREIR 176 (206)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999888877543
No 68
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.35 E-value=2.8e-12 Score=106.15 Aligned_cols=107 Identities=11% Similarity=0.136 Sum_probs=57.4
Q ss_pred CcEEEEEeCCCCcCCCC--CchHHHHHHHHHHhhhcCCccEEEEEEEC-CCCCCHHHH-H----h-cCCCCcHHHHHHHH
Q 038053 72 GQVVNVIDTPGLFDSSA--GSEFVGKEIVKRIGLAKGGIHAVLVVFSV-RSRFSQEEE-A----A-NGGQPYTDEFLAEL 142 (231)
Q Consensus 72 ~~~~~l~Dtpg~~~~~~--~~~~~~~~~~~~~~~~~~~~~~il~vvd~-~~~~~~~~~-~----~-~~~~~~~~~~~~~~ 142 (231)
...+.++||||+..... ....+...+.......+..+|++++|+|+ +..+...+. . . ....+.+ .++|++
T Consensus 130 ~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i-~v~NK~ 208 (315)
T 1jwy_B 130 VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTI-GVITKL 208 (315)
T ss_dssp SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEE-EEEECT
T ss_pred CCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEE-EEEcCc
Confidence 35789999999975211 11123334455555566788999999997 434432221 1 1 2233333 344444
Q ss_pred Hhh------HHHHHhh-----c--cchhhhhhhh---HhhHHHHHHHHHHHHH
Q 038053 143 KRG------ATELRDQ-----Q--AEVDSLKEYS---KQEISKLMGQMQESYE 179 (231)
Q Consensus 143 ~~~------~~~l~~~-----~--~~i~~is~~~---~~~i~~l~~~i~~~~~ 179 (231)
|.. ...+... . .++..+|+.+ +.|+.+++..+...+.
T Consensus 209 Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~ 261 (315)
T 1jwy_B 209 DLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFK 261 (315)
T ss_dssp TSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHH
T ss_pred ccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHh
Confidence 411 0122221 1 1566677777 7888888888776654
No 69
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.35 E-value=2.5e-13 Score=104.36 Aligned_cols=143 Identities=8% Similarity=0.030 Sum_probs=82.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
.+|+|+|.+|+|||||+|.+++...........+.+.......... ....+.++||||... +......
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~-----------~~~~~~~ 91 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHE-KRVKLQIWDTAGQER-----------YRTITTA 91 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETT-TTEEEEEECHHHHHH-----------CHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECC-EEEEEEEEeCCChHH-----------HHHHHHH
Confidence 7899999999999999999998653211111112222211111111 345788999999432 2222333
Q ss_pred hcCCccEEEEEEECCCCCCHHHHH--------hc-CCCCcHHHHHHHHHhhH---------HHHHhhcc-chhhhhhhhH
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEEEA--------AN-GGQPYTDEFLAELKRGA---------TELRDQQA-EVDSLKEYSK 164 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~~---------~~l~~~~~-~i~~is~~~~ 164 (231)
.+..+|++++|+|+++.-+..... .. ...|++ .+.++.|... ..+....+ +++.+|+++|
T Consensus 92 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 170 (191)
T 3dz8_A 92 YYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVI-LVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKEN 170 (191)
T ss_dssp HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEE-EEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTT
T ss_pred HHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEE-EEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCC
Confidence 457889999999998432211111 11 233332 3334433110 12222222 6778999999
Q ss_pred hhHHHHHHHHHHHHH
Q 038053 165 QEISKLMGQMQESYE 179 (231)
Q Consensus 165 ~~i~~l~~~i~~~~~ 179 (231)
.|+.+++..+.+...
T Consensus 171 ~gi~~l~~~l~~~i~ 185 (191)
T 3dz8_A 171 ISVRQAFERLVDAIC 185 (191)
T ss_dssp BSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999988877543
No 70
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.34 E-value=1.1e-12 Score=100.30 Aligned_cols=137 Identities=11% Similarity=0.069 Sum_probs=81.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
.+|+++|.+|||||||+|.+++.......++.+ .+ ...... .+..+.++||||....... ...
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~-~~----~~~~~~-~~~~~~i~Dt~G~~~~~~~-----------~~~ 79 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIG-SN----VEEIVI-NNTRFLMWDIGGQESLRSS-----------WNT 79 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSCEEEECCSC-SS----CEEEEE-TTEEEEEEECCC----CGG-----------GHH
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCc-cc----eEEEEE-CCEEEEEEECCCCHhHHHH-----------HHH
Confidence 899999999999999999999765432222211 11 222333 6778899999997542211 112
Q ss_pred hcCCccEEEEEEECCCCCCHHHHH------h----cCCCCcHHHHHHHHHhh----HHHHHhh-----cc----chhhhh
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEEEA------A----NGGQPYTDEFLAELKRG----ATELRDQ-----QA----EVDSLK 160 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~~~------~----~~~~~~~~~~~~~~~~~----~~~l~~~-----~~----~i~~is 160 (231)
.+..+|++++|+|+++.-+..... . ....|++ .+.++.|.. ..++.+. +. +++.+|
T Consensus 80 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-lv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S 158 (187)
T 1zj6_A 80 YYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLL-IFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACC 158 (187)
T ss_dssp HHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEE-EEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECB
T ss_pred HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEE-EEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEcc
Confidence 236789999999998654333222 1 1233333 333443311 0122111 11 567899
Q ss_pred hhhHhhHHHHHHHHHHHH
Q 038053 161 EYSKQEISKLMGQMQESY 178 (231)
Q Consensus 161 ~~~~~~i~~l~~~i~~~~ 178 (231)
+++|.|+++++..+.+..
T Consensus 159 a~~g~gi~~l~~~l~~~~ 176 (187)
T 1zj6_A 159 ALTGEGLCQGLEWMMSRL 176 (187)
T ss_dssp TTTTBTHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHH
Confidence 999999999998887643
No 71
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.34 E-value=3.2e-12 Score=97.78 Aligned_cols=140 Identities=16% Similarity=0.168 Sum_probs=79.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
.+|+++|.+|||||||+|.|++..... ...+++.......... .+ ..+.++||||.... ....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~~~~---~~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~-----------~~~~ 86 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNHFVD---EYDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEY-----------SAMR 86 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCCS---CCCTTCCEEEEEEEEE-TTEEEEEEEEECCC-------------------
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCcc---ccCCccceEEEEEEEE-CCEEEEEEEEECCChHHH-----------HHHH
Confidence 699999999999999999999875321 1222222222222222 33 34789999996531 1112
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH--------h--cCCCCcHHHHHHHHHhh--------HHHHHhhcc-chhhhhhh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------A--NGGQPYTDEFLAELKRG--------ATELRDQQA-EVDSLKEY 162 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~--~~~~~~~~~~~~~~~~~--------~~~l~~~~~-~i~~is~~ 162 (231)
...+..+|++++|+|+++..+..+.. . ....|++ .+.++.|.. ...+....+ +++.+|++
T Consensus 87 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 165 (190)
T 3con_A 87 DQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMV-LVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAK 165 (190)
T ss_dssp ---CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEE-EEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTT
T ss_pred HHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEE-EEEECCcCCcccCCHHHHHHHHHHcCCeEEEEeCC
Confidence 23457889999999998543322211 1 1233433 333443310 012222222 67788999
Q ss_pred hHhhHHHHHHHHHHHHH
Q 038053 163 SKQEISKLMGQMQESYE 179 (231)
Q Consensus 163 ~~~~i~~l~~~i~~~~~ 179 (231)
++.|+.+++..+.+.+.
T Consensus 166 ~~~gi~~l~~~l~~~~~ 182 (190)
T 3con_A 166 TRQGVEDAFYTLVREIR 182 (190)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999888877554
No 72
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.34 E-value=2.9e-12 Score=99.53 Aligned_cols=141 Identities=13% Similarity=0.086 Sum_probs=83.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
.+|+|+|.+|+|||||+|.+++...... ..+..+.+........ .+ ..+.++||||... +....
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~-----------~~~~~ 92 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQGLFPPG--QGATIGVDFMIKTVEI-NGEKVKLQIWDTAGQER-----------FRSIT 92 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCTT--CCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGG-----------GHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCC--CCCccceeEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHHHH
Confidence 6999999999999999999987754211 1222222222223333 33 3678999999643 12223
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH--------h-cCCCCcHHHHHHHHHhh------H---HHHHhhcc-chhhhhhh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------A-NGGQPYTDEFLAELKRG------A---TELRDQQA-EVDSLKEY 162 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~------~---~~l~~~~~-~i~~is~~ 162 (231)
...+..+|++++|+|+++..+..... . ....|++ .+.++.|.. . ..+....+ +++.+|++
T Consensus 93 ~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~pii-lv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 171 (201)
T 2ew1_A 93 QSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITV-LVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAK 171 (201)
T ss_dssp GGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEE-EEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTT
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEE-EEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCC
Confidence 45567899999999998533221111 1 1223332 333443311 0 11221122 56779999
Q ss_pred hHhhHHHHHHHHHHHHH
Q 038053 163 SKQEISKLMGQMQESYE 179 (231)
Q Consensus 163 ~~~~i~~l~~~i~~~~~ 179 (231)
+|.|+++++..+.....
T Consensus 172 ~g~gv~~l~~~l~~~i~ 188 (201)
T 2ew1_A 172 ESDNVEKLFLDLACRLI 188 (201)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999888876543
No 73
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.34 E-value=8.7e-13 Score=98.85 Aligned_cols=139 Identities=13% Similarity=0.047 Sum_probs=78.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
.+|+++|.+|+|||||+|.+++...... ..+..+.......... .+ ..+.++||||.... ....
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~~~ 72 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENKFNDK--HITTLGASFLTKKLNI-GGKRVNLAIWDTAGQERF-----------HALG 72 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCCSS--CCCCCSCEEEEEEEES-SSCEEEEEEEECCCC------------------
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCcC--CCCccceEEEEEEEEE-CCEEEEEEEEECCCcHhh-----------hhhH
Confidence 6899999999999999999997754211 1222222222222222 22 35778899996531 1122
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhhh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKEY 162 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~~ 162 (231)
...+..+|++++|+|+++..+..... .....|++ .+.++.|.. ...+....+ +++.+|++
T Consensus 73 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 151 (170)
T 1z08_A 73 PIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLC-IVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAK 151 (170)
T ss_dssp CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEE-EEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTT
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEE-EEEECcccccccccCHHHHHHHHHHcCCeEEEecCC
Confidence 33457889999999998532222211 11122222 233333311 012222222 56778999
Q ss_pred hHhhHHHHHHHHHHH
Q 038053 163 SKQEISKLMGQMQES 177 (231)
Q Consensus 163 ~~~~i~~l~~~i~~~ 177 (231)
++.|+++++..+...
T Consensus 152 ~~~gi~~l~~~l~~~ 166 (170)
T 1z08_A 152 QNKGIEELFLDLCKR 166 (170)
T ss_dssp TTBSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999998887664
No 74
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.34 E-value=1.5e-12 Score=99.63 Aligned_cols=137 Identities=14% Similarity=0.062 Sum_probs=85.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
.+|+++|.+|+|||||+|.+++.......+ |.......... .+..+.++||||....... ...
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~-----t~~~~~~~~~~-~~~~~~~~Dt~G~~~~~~~-----------~~~ 85 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHLGDVVTTVP-----TVGVNLETLQY-KNISFEVWDLGGQTGVRPY-----------WRC 85 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCSCCEEECS-----STTCCEEEEEE-TTEEEEEEEECCSSSSCCC-----------CSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCcCC-----CCceEEEEEEE-CCEEEEEEECCCCHhHHHH-----------HHH
Confidence 899999999999999999998765432211 21122222333 5778899999997643221 123
Q ss_pred hcCCccEEEEEEECCCCCCHHHHH------hc----CCCCcHHHHHHHHHhhH----HHHHhhcc---------chhhhh
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEEEA------AN----GGQPYTDEFLAELKRGA----TELRDQQA---------EVDSLK 160 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~----~~l~~~~~---------~i~~is 160 (231)
.+..+|++++|+|+++.-+..... .. ...|++ .+.++.|... .++.+.+. +++.+|
T Consensus 86 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 164 (189)
T 2x77_A 86 YFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLL-IFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSS 164 (189)
T ss_dssp SSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEE-EEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECC
T ss_pred HhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEE-EEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEcc
Confidence 346889999999998653333221 11 233333 3444443210 12222111 577899
Q ss_pred hhhHhhHHHHHHHHHHHH
Q 038053 161 EYSKQEISKLMGQMQESY 178 (231)
Q Consensus 161 ~~~~~~i~~l~~~i~~~~ 178 (231)
++++.|+++++..+.+..
T Consensus 165 a~~~~gi~~l~~~l~~~i 182 (189)
T 2x77_A 165 SKTGDGLVEGMDWLVERL 182 (189)
T ss_dssp TTTCTTHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHH
Confidence 999999999998887654
No 75
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.34 E-value=1.3e-13 Score=115.96 Aligned_cols=87 Identities=10% Similarity=0.166 Sum_probs=64.7
Q ss_pred CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-----eEEeeCCcEE
Q 038053 1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-----TTVLKDGQVV 75 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-----~~~~~~~~~~ 75 (231)
+++.|++..++++++|++++| ..++|+|+||||||||+++|+|...+.. |.+....... ..........
T Consensus 10 ls~~y~~~~~L~~vsl~i~~G--e~~~llGpsGsGKSTLLr~iaGl~~p~~----G~I~i~G~~i~~~~~~~~~~~r~ig 83 (359)
T 3fvq_A 10 LSKSFQNTPVLNDISLSLDPG--EILFIIGASGCGKTTLLRCLAGFEQPDS----GEISLSGKTIFSKNTNLPVRERRLG 83 (359)
T ss_dssp EEEEETTEEEEEEEEEEECTT--CEEEEEESTTSSHHHHHHHHHTSSCCSE----EEEEETTEEEESSSCBCCGGGSCCE
T ss_pred EEEEECCEEEEEeeEEEEcCC--CEEEEECCCCchHHHHHHHHhcCCCCCC----cEEEECCEECcccccccchhhCCEE
Confidence 367899999999999999999 9999999999999999999999988433 3333222111 0111134578
Q ss_pred EEEeCCCCcCCCCCchHH
Q 038053 76 NVIDTPGLFDSSAGSEFV 93 (231)
Q Consensus 76 ~l~Dtpg~~~~~~~~~~~ 93 (231)
+++|.+.+++..++.+++
T Consensus 84 ~vfQ~~~l~p~ltV~eni 101 (359)
T 3fvq_A 84 YLVQEGVLFPHLTVYRNI 101 (359)
T ss_dssp EECTTCCCCTTSCHHHHH
T ss_pred EEeCCCcCCCCCCHHHHH
Confidence 899999998877665544
No 76
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.34 E-value=6.7e-13 Score=102.13 Aligned_cols=140 Identities=13% Similarity=0.148 Sum_probs=79.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
.+|+++|.+|+|||||+|.|++...... ..+..+.+........ .+ ..+.++||||.... .....
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~-------~~~~~--- 93 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDDTFCEA--CKSTVGVDFKIKTVEL-RGKKIRLQIWDTAGQERF-------NSITS--- 93 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC----------CCTTEEEEEEEEEE-TTEEEEEEEEEECCSGGG-------HHHHH---
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCcC--CCCccceeEEEEEEEE-CCeEEEEEEEeCCCcHHH-------HHHHH---
Confidence 6899999999999999999998764221 2223333333333333 33 46789999996531 11111
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH--------h-cCCCCcHHHHHHHHHhh---------HHHHHhhc-c-chhhhhh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------A-NGGQPYTDEFLAELKRG---------ATELRDQQ-A-EVDSLKE 161 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~---------~~~l~~~~-~-~i~~is~ 161 (231)
..+..+|++++|+|+++..+..+.. . ....|++ .+.++.|.. ...+.... . +++.+|+
T Consensus 94 -~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~pii-lV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA 171 (192)
T 2il1_A 94 -AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELL-LVGNKLDCETDREITRQQGEKFAQQITGMRFCEASA 171 (192)
T ss_dssp -HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEE-EEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBT
T ss_pred -HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEE-EEEECcccccccccCHHHHHHHHHhcCCCeEEEEeC
Confidence 2234579999999998543332211 1 1233333 333443311 01232222 2 5677899
Q ss_pred hhHhhHHHHHHHHHHHH
Q 038053 162 YSKQEISKLMGQMQESY 178 (231)
Q Consensus 162 ~~~~~i~~l~~~i~~~~ 178 (231)
++|.|+++++..+....
T Consensus 172 ~~g~gi~~l~~~l~~~i 188 (192)
T 2il1_A 172 KDNFNVDEIFLKLVDDI 188 (192)
T ss_dssp TTTBSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999988877643
No 77
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.34 E-value=6.6e-13 Score=103.40 Aligned_cols=141 Identities=13% Similarity=0.121 Sum_probs=83.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
.+|+++|.+|+|||||+|.|++..... ...+..+.+........ .+ ..+.++||||....... .
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~-----------~ 86 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVEDKFNP--SFITTIGIDFKIKTVDI-NGKKVKLQLWDTAGQERFRTI-----------T 86 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCC--SSSCCCSCCEEEEEEEE-TTEEEEEEEECCTTGGGGTCC-----------C
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc--ccCCcccceEEEEEEEE-CCEEEEEEEEeCCCcHHHHHH-----------H
Confidence 799999999999999999999775421 12233333333333333 44 46889999996542211 1
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhh--------HHHHHhhcc-chhhhhhhh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRG--------ATELRDQQA-EVDSLKEYS 163 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~--------~~~l~~~~~-~i~~is~~~ 163 (231)
...+..+|++++|+|+++..+..... .....|++ .++++.|.. ...+....+ +++.+|+++
T Consensus 87 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (213)
T 3cph_A 87 TAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLL-LVGNKSDMETRVVTADQGEALAKELGIPFIESSAKN 165 (213)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEE-EEEECTTCSSCCSCHHHHHHHHHHHTCCEEECBTTT
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEE-EEEECCCCcccccCHHHHHHHHHHcCCEEEEEeCCC
Confidence 12236789999999998532211111 11123332 333443310 012222222 677899999
Q ss_pred HhhHHHHHHHHHHHHH
Q 038053 164 KQEISKLMGQMQESYE 179 (231)
Q Consensus 164 ~~~i~~l~~~i~~~~~ 179 (231)
+.|+++++..+.....
T Consensus 166 ~~gi~~l~~~l~~~~~ 181 (213)
T 3cph_A 166 DDNVNEIFFTLAKLIQ 181 (213)
T ss_dssp TBSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999888876543
No 78
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.34 E-value=1.5e-11 Score=100.99 Aligned_cols=153 Identities=11% Similarity=0.097 Sum_probs=85.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccc----cCCCC----------------------cceee---------------
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKAS----ADSSG----------------------VTKTC--------------- 62 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~----~~~~~----------------------~t~~~--------------- 62 (231)
.+|+++|.+|||||||+|+|+|......+ ...++ +|.+.
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~g~ 106 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGT 106 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCSS
T ss_pred CeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhccc
Confidence 69999999999999999999998752111 00111 11110
Q ss_pred --------eeeeEEeeCCcEEEEEeCCCCcCCCC--CchHHHHHHHHHHhhhcCCccEEE-EEEECCCCCCHHHHH----
Q 038053 63 --------EMKTTVLKDGQVVNVIDTPGLFDSSA--GSEFVGKEIVKRIGLAKGGIHAVL-VVFSVRSRFSQEEEA---- 127 (231)
Q Consensus 63 --------~~~~~~~~~~~~~~l~Dtpg~~~~~~--~~~~~~~~~~~~~~~~~~~~~~il-~vvd~~~~~~~~~~~---- 127 (231)
............+.++||||+..... ..+.....+.......+..++.++ +|+|+++.+...+..
T Consensus 107 ~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~ 186 (299)
T 2aka_B 107 NKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAK 186 (299)
T ss_dssp TTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHH
T ss_pred CCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHH
Confidence 00000111136788999999975321 012222233333334445666554 799998666654421
Q ss_pred -h-cCCCCcHHHHHHHHHhhH------HHHHhh-------ccchhhhhhhhHhhHHHHHHHHHHH
Q 038053 128 -A-NGGQPYTDEFLAELKRGA------TELRDQ-------QAEVDSLKEYSKQEISKLMGQMQES 177 (231)
Q Consensus 128 -~-~~~~~~~~~~~~~~~~~~------~~l~~~-------~~~i~~is~~~~~~i~~l~~~i~~~ 177 (231)
. ....+.+ .++|+.|... ..+... ..+++.+||++|.|+++++..+...
T Consensus 187 ~~~~~~~~~i-~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 187 EVDPQGQRTI-GVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp HHCTTCSSEE-EEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred HhCCCCCeEE-EEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 1 1233333 3444444210 122221 1267789999999999988887663
No 79
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.34 E-value=3e-13 Score=107.44 Aligned_cols=69 Identities=13% Similarity=0.133 Sum_probs=55.2
Q ss_pred CCCCC--CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEe
Q 038053 2 SSGMG--ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVID 79 (231)
Q Consensus 2 ~~~~~--~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~D 79 (231)
++.|+ +.+++++++|++++| ..++|+|+||||||||+++|+|...+ ..|.+.. .+...++++
T Consensus 13 ~~~y~~~~~~il~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p----~~G~i~~----------~g~i~~v~q 76 (229)
T 2pze_A 13 TAFWEEGGTPVLKDINFKIERG--QLLAVAGSTGAGKTSLLMMIMGELEP----SEGKIKH----------SGRISFCSQ 76 (229)
T ss_dssp EECSSTTSCCSEEEEEEEEETT--CEEEEECCTTSSHHHHHHHHTTSSCC----SEEEEEE----------CSCEEEECS
T ss_pred EEEeCCCCceeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCcC----CccEEEE----------CCEEEEEec
Confidence 56774 578999999999999 99999999999999999999999873 3332222 456778888
Q ss_pred CCCCcCC
Q 038053 80 TPGLFDS 86 (231)
Q Consensus 80 tpg~~~~ 86 (231)
.|.+++.
T Consensus 77 ~~~~~~~ 83 (229)
T 2pze_A 77 FSWIMPG 83 (229)
T ss_dssp SCCCCSB
T ss_pred CCcccCC
Confidence 8887763
No 80
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.33 E-value=1e-11 Score=93.85 Aligned_cols=142 Identities=14% Similarity=0.106 Sum_probs=80.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
.+|+++|.+|+|||||+|.+++...... ...+.++.......... .+ ..+.++||||.... ....
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~~~~~-~~~~t~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~-----------~~~~ 77 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGAFLAG-TFISTVGIDFRNKVLDV-DGVKVKLQMWDTAGQERF-----------RSVT 77 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCC-CCCCCCSCEEEEEEEEE-TTEEEEEEEEECCCC------------------
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCC-CcCCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHHH-----------HHHH
Confidence 7999999999999999999998764221 11222222222222222 33 36788999995431 1122
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH--------h-cCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhhh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------A-NGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKEY 162 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~~ 162 (231)
...+..+|++++|+|+++..+..+.. . ....|++ .+.++.|.. ...+....+ +++.+|++
T Consensus 78 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 156 (180)
T 2g6b_A 78 HAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALM-LLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAK 156 (180)
T ss_dssp -CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEE-EEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTT
T ss_pred HHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEE-EEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCC
Confidence 34456789999999998533222111 1 1223333 233333310 012222222 67778999
Q ss_pred hHhhHHHHHHHHHHHHH
Q 038053 163 SKQEISKLMGQMQESYE 179 (231)
Q Consensus 163 ~~~~i~~l~~~i~~~~~ 179 (231)
++.|+++++..+...+.
T Consensus 157 ~~~gi~~l~~~l~~~~~ 173 (180)
T 2g6b_A 157 TGLNVDLAFTAIAKELK 173 (180)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999888877544
No 81
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.33 E-value=1.1e-11 Score=100.75 Aligned_cols=92 Identities=27% Similarity=0.346 Sum_probs=63.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053 23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG 102 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~ 102 (231)
..+|+++|.+|+|||||+|.|+|....... ...++|.......... .+..+.++||||+.+...........+..++
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~- 115 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGERVVSIS-PFQSEGPRPVMVSRSR-AGFTLNIIDTPGLIEGGYINDMALNIIKSFL- 115 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSCCSCCC-SSSCCCSSCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHHT-
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCccccc-CCCCcceeeEEEEEee-CCeEEEEEECCCCCCCccchHHHHHHHHHHh-
Confidence 479999999999999999999998754332 3444554444444444 6778999999999765433333323332221
Q ss_pred hhcCCccEEEEEEECC
Q 038053 103 LAKGGIHAVLVVFSVR 118 (231)
Q Consensus 103 ~~~~~~~~il~vvd~~ 118 (231)
....+|++++|++++
T Consensus 116 -~~~~~d~il~v~~~d 130 (270)
T 1h65_A 116 -LDKTIDVLLYVDRLD 130 (270)
T ss_dssp -TTCEECEEEEEEESS
T ss_pred -hcCCCCEEEEEEeCC
Confidence 235789999999886
No 82
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.33 E-value=3e-12 Score=108.94 Aligned_cols=94 Identities=17% Similarity=0.163 Sum_probs=69.4
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC-----------------cEEEEEe
Q 038053 17 TSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG-----------------QVVNVID 79 (231)
Q Consensus 17 ~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~~l~D 79 (231)
.+..| .+++|+|+||||||||||+|+|...... ...+++|..+..+.... .+ ..+.++|
T Consensus 16 ~v~~g--~~vgiVG~pnaGKSTL~n~Ltg~~~a~~-~~~p~tTi~p~~G~v~v-~~~r~~~l~~~~~~~~~v~~~i~lvD 91 (392)
T 1ni3_A 16 RPGNN--LKTGIVGMPNVGKSTFFRAITKSVLGNP-ANYPYATIDPEEAKVAV-PDERFDWLCEAYKPKSRVPAFLTVFD 91 (392)
T ss_dssp SSSSC--CEEEEEECSSSSHHHHHHHHHHSTTTST-TCCSSCCCCTTEEEEEE-CCHHHHHHHHHHCCSEEECEEEEEEC
T ss_pred cccCC--CEEEEECCCCCCHHHHHHHHHCCCcccc-cCCCceeecceeeeeee-CCcchhhhhhhcccccccCcceEEEe
Confidence 45667 8999999999999999999999764223 35666777666655544 32 3578999
Q ss_pred CCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECC
Q 038053 80 TPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVR 118 (231)
Q Consensus 80 tpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~ 118 (231)
+||++...+..+.+...+...+ ..+|.+++|+|+.
T Consensus 92 ~pGl~~~~s~~e~L~~~fl~~i----r~~d~il~Vvd~~ 126 (392)
T 1ni3_A 92 IAGLTKGASTGVGLGNAFLSHV----RAVDAIYQVVRAF 126 (392)
T ss_dssp TGGGCCCCCSSSSSCHHHHHHH----TTCSEEEEEEECC
T ss_pred ccccccCCcHHHHHHHHHHHHH----HHHHHHHHHHhcc
Confidence 9999987766555554554433 5679999999986
No 83
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.33 E-value=6e-13 Score=100.86 Aligned_cols=141 Identities=16% Similarity=0.126 Sum_probs=80.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEee-CCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG 102 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~ 102 (231)
.+|+++|.+|+|||||+|.+++...... ..+..+........... ....+.++||||...... ...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~~~ 79 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQFVEF--QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS-----------LAP 79 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCTTT--SCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGG-----------GTH
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCc--CCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhh-----------hhH
Confidence 6899999999999999999998764321 11222221112222221 134678999999653110 111
Q ss_pred hhcCCccEEEEEEECCCCCCHHHHH--------h-cCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhhhh
Q 038053 103 LAKGGIHAVLVVFSVRSRFSQEEEA--------A-NGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKEYS 163 (231)
Q Consensus 103 ~~~~~~~~il~vvd~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~~~ 163 (231)
..+..+|++++|+|+++..+..... . ....|++ .+.++.|.. ...+....+ +++.+|+++
T Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 158 (181)
T 2efe_B 80 MYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMA-LAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKT 158 (181)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEE-EEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSS
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEE-EEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCC
Confidence 2346789999999998543322211 1 1122332 233333310 012222222 677899999
Q ss_pred HhhHHHHHHHHHHHH
Q 038053 164 KQEISKLMGQMQESY 178 (231)
Q Consensus 164 ~~~i~~l~~~i~~~~ 178 (231)
|.|+++++..+...+
T Consensus 159 g~gi~~l~~~l~~~~ 173 (181)
T 2efe_B 159 ATNVKEIFYEIARRL 173 (181)
T ss_dssp CTTHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999998877643
No 84
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.33 E-value=8.2e-14 Score=110.29 Aligned_cols=86 Identities=16% Similarity=0.017 Sum_probs=61.7
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE-E------eeCCcE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT-V------LKDGQV 74 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~-~------~~~~~~ 74 (231)
++.|++..++++++|++++| ..++|+|+||||||||+++|+|...+.. |.+......... . ......
T Consensus 11 ~~~y~~~~~l~~vsl~i~~G--e~~~iiG~nGsGKSTLl~~l~Gl~~p~~----G~i~~~g~~~~~~~~~~~~~~~~~~i 84 (224)
T 2pcj_A 11 KKVIRGYEILKGISLSVKKG--EFVSIIGASGSGKSTLLYILGLLDAPTE----GKVFLEGKEVDYTNEKELSLLRNRKL 84 (224)
T ss_dssp EEEETTEEEEEEEEEEEETT--CEEEEEECTTSCHHHHHHHHTTSSCCSE----EEEEETTEECCSSCHHHHHHHHHHHE
T ss_pred EEEECCEeeEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCc----eEEEECCEECCCCCHHHHHHHHhCcE
Confidence 56788888999999999999 9999999999999999999999987433 322221111000 0 001346
Q ss_pred EEEEeCCCCcCCCCCchHH
Q 038053 75 VNVIDTPGLFDSSAGSEFV 93 (231)
Q Consensus 75 ~~l~Dtpg~~~~~~~~~~~ 93 (231)
.++++.|.+++..++.+++
T Consensus 85 ~~v~q~~~l~~~~tv~e~l 103 (224)
T 2pcj_A 85 GFVFQFHYLIPELTALENV 103 (224)
T ss_dssp EEECSSCCCCTTSCHHHHH
T ss_pred EEEecCcccCCCCCHHHHH
Confidence 7899999888766655544
No 85
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.33 E-value=9.6e-14 Score=112.42 Aligned_cols=86 Identities=14% Similarity=0.096 Sum_probs=61.7
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-----------E---
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-----------T--- 67 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-----------~--- 67 (231)
++.|++..++++++|++++| .+++|+|+||||||||+++|+|...+.. |.+........ .
T Consensus 13 ~~~y~~~~vl~~vsl~i~~G--e~~~liG~nGsGKSTLlk~l~Gl~~p~~----G~i~~~g~~~~~~~~~~~~~~~~~~~ 86 (262)
T 1b0u_A 13 HKRYGGHEVLKGVSLQARAG--DVISIIGSSGSGKSTFLRCINFLEKPSE----GAIIVNGQNINLVRDKDGQLKVADKN 86 (262)
T ss_dssp EEEETTEEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHTTSSCCSE----EEEEETTEECCEEECTTSSEEESCHH
T ss_pred EEEECCEEEEEeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCC----cEEEECCEEccccccccccccccChh
Confidence 56788888999999999999 9999999999999999999999987433 32222211100 0
Q ss_pred --EeeCCcEEEEEeCCCCcCCCCCchHH
Q 038053 68 --VLKDGQVVNVIDTPGLFDSSAGSEFV 93 (231)
Q Consensus 68 --~~~~~~~~~l~Dtpg~~~~~~~~~~~ 93 (231)
........++++.|.+++..++.+++
T Consensus 87 ~~~~~~~~i~~v~Q~~~l~~~ltv~e~l 114 (262)
T 1b0u_A 87 QLRLLRTRLTMVFQHFNLWSHMTVLENV 114 (262)
T ss_dssp HHHHHHHHEEEECSSCCCCTTSCHHHHH
T ss_pred hHHHHhcceEEEecCcccCCCCcHHHHH
Confidence 00023467889998888766655543
No 86
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.33 E-value=1.1e-12 Score=99.39 Aligned_cols=142 Identities=17% Similarity=0.148 Sum_probs=79.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEee--CCcEEEEEeCCCCcCCCCCchHHHHHHHHH
Q 038053 23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLK--DGQVVNVIDTPGLFDSSAGSEFVGKEIVKR 100 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~ 100 (231)
..+|+++|.+|||||||+|.+++...... ..+..+.+......... ....+.++||||... +...
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-----------~~~~ 74 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVNDKYSQQ--YKATIGADFLTKEVTVDGDKVATMQVWDTAGQER-----------FQSL 74 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTT--C---CCCSCEEEEECCSSSCCEEEEEECCC-------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCcCCcc--cCCccceEEEEEEEEEcCCcEEEEEEEECCCChH-----------hhhh
Confidence 37999999999999999999998764211 12222222222222221 235678999999543 1122
Q ss_pred HhhhcCCccEEEEEEECCCCCCHHHHH---------hc----CCCCcHHHHHHHHHh----------hHHHHHh-hc-cc
Q 038053 101 IGLAKGGIHAVLVVFSVRSRFSQEEEA---------AN----GGQPYTDEFLAELKR----------GATELRD-QQ-AE 155 (231)
Q Consensus 101 ~~~~~~~~~~il~vvd~~~~~~~~~~~---------~~----~~~~~~~~~~~~~~~----------~~~~l~~-~~-~~ 155 (231)
....+..+|++++|+|+++..+..... .. ...|++ .+.++.|. ....+.. .. .+
T Consensus 75 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~ 153 (182)
T 1ky3_A 75 GVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFV-ILGNKIDAEESKKIVSEKSAQELAKSLGDIP 153 (182)
T ss_dssp --CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEE-EEEECTTSCGGGCCSCHHHHHHHHHHTTSCC
T ss_pred hHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEE-EEEECCccccccccCCHHHHHHHHHhcCCCe
Confidence 234557889999999998532221111 11 233433 23344331 0012222 11 26
Q ss_pred hhhhhhhhHhhHHHHHHHHHHHH
Q 038053 156 VDSLKEYSKQEISKLMGQMQESY 178 (231)
Q Consensus 156 i~~is~~~~~~i~~l~~~i~~~~ 178 (231)
++.+|+++|.|+++++..+....
T Consensus 154 ~~~~Sa~~~~gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 154 LFLTSAKNAINVDTAFEEIARSA 176 (182)
T ss_dssp EEEEBTTTTBSHHHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHHHH
Confidence 77899999999999998887654
No 87
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.33 E-value=7.7e-12 Score=93.33 Aligned_cols=140 Identities=16% Similarity=0.067 Sum_probs=72.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
.+|+++|.+|+|||||+|.+++....... ...+.+..... .. ......+.+.||||..... .....
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~-~~-~~~~~~~~i~D~~g~~~~~-----------~~~~~ 68 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGVEDGPEA-EAAGHTYDRSI-VV-DGEEASLMVYDIWEQDGGR-----------WLPGH 68 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEE-EE-TTEEEEEEEEECC----------------------
T ss_pred EEEEEECCCCCCHHHHHHHHcCccccCCC-CccccceEEEE-EE-CCEEEEEEEEECCCCccch-----------hhhhh
Confidence 68999999999999999999987654332 23333332111 11 1123456789999965421 11122
Q ss_pred hcCCccEEEEEEECCCCCCHHHHH-------h---cCCCCcHHHHHHHHHhhH---------HHHHhhcc-chhhhhhhh
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEEEA-------A---NGGQPYTDEFLAELKRGA---------TELRDQQA-EVDSLKEYS 163 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~~~-------~---~~~~~~~~~~~~~~~~~~---------~~l~~~~~-~i~~is~~~ 163 (231)
.+..+|++++|+|+++.-+..... . ....|++ .+.++.|... ..+....+ +++.+|+++
T Consensus 69 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 147 (166)
T 3q72_A 69 CMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPII-LVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAAL 147 (166)
T ss_dssp ----CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEE-EEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGG
T ss_pred hhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEeccccccccccCHHHHHHHHHHhCCcEEEeccCC
Confidence 346789999999998532222211 1 1233433 3334433110 12222222 677899999
Q ss_pred HhhHHHHHHHHHHHH
Q 038053 164 KQEISKLMGQMQESY 178 (231)
Q Consensus 164 ~~~i~~l~~~i~~~~ 178 (231)
|.|+++++..+....
T Consensus 148 ~~gi~~l~~~l~~~~ 162 (166)
T 3q72_A 148 HHNVQALFEGVVRQI 162 (166)
T ss_dssp TBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999998887754
No 88
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.33 E-value=6e-13 Score=99.65 Aligned_cols=141 Identities=12% Similarity=0.116 Sum_probs=80.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
.+|+++|.+|+|||||+|.+++...... ..++.+.+........ .+ ..+.++||||....... .
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~-----------~ 69 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDKFNPS--FITTIGIDFKIKTVDI-NGKKVKLQIWDTAGQERFRTI-----------T 69 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCC---------CCEEEEEEES-SSCEEEEEEECCTTGGGTSCC-----------C
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCC--CCCccceeEEEEEEEE-CCEEEEEEEEeCCCChhhhhh-----------H
Confidence 6899999999999999999998764211 1222222222222332 22 36788999996543211 1
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH--------h-cCCCCcHHHHHHHHHhh--------HHHHHhhcc-chhhhhhhh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------A-NGGQPYTDEFLAELKRG--------ATELRDQQA-EVDSLKEYS 163 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~--------~~~l~~~~~-~i~~is~~~ 163 (231)
...+..+|++++|+|+++..+..... . ....|++ .+.++.|.. ...+....+ +++.+|+++
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 148 (170)
T 1g16_A 70 TAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLL-LVGNKSDMETRVVTADQGEALAKELGIPFIESSAKN 148 (170)
T ss_dssp HHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEE-EEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTT
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEE-EEEECccCCcCccCHHHHHHHHHHcCCeEEEEECCC
Confidence 12236789999999998532221111 1 1223333 333443310 012222222 677899999
Q ss_pred HhhHHHHHHHHHHHHH
Q 038053 164 KQEISKLMGQMQESYE 179 (231)
Q Consensus 164 ~~~i~~l~~~i~~~~~ 179 (231)
|.|+++++..+.+...
T Consensus 149 ~~gv~~l~~~l~~~~~ 164 (170)
T 1g16_A 149 DDNVNEIFFTLAKLIQ 164 (170)
T ss_dssp TBSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999888876543
No 89
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.32 E-value=3.6e-12 Score=95.44 Aligned_cols=139 Identities=17% Similarity=0.107 Sum_probs=77.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEe-eCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG 102 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~ 102 (231)
.+|+++|.+|+|||||+|.+++...........+.+.. ..... .....+.++||||..... . ....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~~~~Dt~G~~~~~----~---~~~~--- 70 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR---QVISCDKSICTLQITDTTGSHQFP----A---MQRL--- 70 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE---EEEEETTEEEEEEEEECCSCSSCH----H---HHHH---
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE---EEEEECCEEEEEEEEECCCchhhH----H---HHHH---
Confidence 78999999999999999999986532110111111111 11111 012357899999976421 1 1111
Q ss_pred hhcCCccEEEEEEECCCCCCHHHHH--------hc---CCCCcHHHHHHHHHhhH---------HHHHhhcc-chhhhhh
Q 038053 103 LAKGGIHAVLVVFSVRSRFSQEEEA--------AN---GGQPYTDEFLAELKRGA---------TELRDQQA-EVDSLKE 161 (231)
Q Consensus 103 ~~~~~~~~il~vvd~~~~~~~~~~~--------~~---~~~~~~~~~~~~~~~~~---------~~l~~~~~-~i~~is~ 161 (231)
.+..+|++++|+|+++..+..... .. ...|++ .+.++.|... ..+....+ +++.+|+
T Consensus 71 -~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii-~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 148 (172)
T 2erx_A 71 -SISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIM-LVGNKCDESPSREVQSSEAEALARTWKCAFMETSA 148 (172)
T ss_dssp -HHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEE-EEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBT
T ss_pred -hcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEE-EEEEccccccccccCHHHHHHHHHHhCCeEEEecC
Confidence 223469999999998432221111 11 234443 3344444210 11212122 6678999
Q ss_pred hhHhhHHHHHHHHHHH
Q 038053 162 YSKQEISKLMGQMQES 177 (231)
Q Consensus 162 ~~~~~i~~l~~~i~~~ 177 (231)
++|.|+++++..+.+.
T Consensus 149 ~~~~gi~~l~~~l~~~ 164 (172)
T 2erx_A 149 KLNHNVKELFQELLNL 164 (172)
T ss_dssp TTTBSHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHHHH
Confidence 9999999999887653
No 90
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.32 E-value=1.8e-12 Score=98.71 Aligned_cols=135 Identities=12% Similarity=0.081 Sum_probs=84.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
.+|+++|.+|+|||||+|.+++.......+ ..+.+. ..... .+..+.++||||...... ....
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-t~~~~~----~~~~~-~~~~~~i~Dt~G~~~~~~-----------~~~~ 84 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMNEVVHTSP-TIGSNV----EEIVI-NNTRFLMWDIGGQESLRS-----------SWNT 84 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTTSCEEEEC-CSSSSC----EEEEE-TTEEEEEEEESSSGGGTC-----------GGGG
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCccCC-cCceee----EEEEE-CCEEEEEEECCCCHhHHH-----------HHHH
Confidence 799999999999999999999876532222 222222 22333 678889999999754221 1233
Q ss_pred hcCCccEEEEEEECCCCCCHHHHH------h----cCCCCcHHHHHHHHHhh----HHHHHhhc--------c-chhhhh
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEEEA------A----NGGQPYTDEFLAELKRG----ATELRDQQ--------A-EVDSLK 160 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~~~------~----~~~~~~~~~~~~~~~~~----~~~l~~~~--------~-~i~~is 160 (231)
.+..+|++++|+|+++..+..... . ....|++ .+.++.|.. ..++.+.+ . +++.+|
T Consensus 85 ~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~pii-lv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S 163 (181)
T 2h17_A 85 YYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLL-IFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACC 163 (181)
T ss_dssp GGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEE-EEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECB
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEE-EEEECCCcccCCCHHHHHHHhCcccccCCceEEEEcc
Confidence 457889999999998654433321 1 1333333 334444311 01222221 1 567899
Q ss_pred hhhHhhHHHHHHHHHH
Q 038053 161 EYSKQEISKLMGQMQE 176 (231)
Q Consensus 161 ~~~~~~i~~l~~~i~~ 176 (231)
++++.|+++++..+.+
T Consensus 164 a~~g~gi~~l~~~l~~ 179 (181)
T 2h17_A 164 ALTGEGLCQGLEWMMS 179 (181)
T ss_dssp TTTTBTHHHHHHHHHT
T ss_pred CCCCcCHHHHHHHHHh
Confidence 9999999998887653
No 91
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.32 E-value=1.7e-13 Score=115.95 Aligned_cols=87 Identities=21% Similarity=0.211 Sum_probs=65.3
Q ss_pred CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEEeeCCcEEEEEe
Q 038053 1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTVLKDGQVVNVID 79 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~D 79 (231)
+++.|++..++++++|++++| ..++|+|+||||||||+++|+|...+..| .+....... ..........+++|
T Consensus 9 l~~~yg~~~~L~~vsl~i~~G--e~~~llGpsGsGKSTLLr~iaGl~~p~~G----~I~i~G~~~~~~~~~~r~ig~VfQ 82 (381)
T 3rlf_A 9 VTKAWGEVVVSKDINLDIHEG--EFVVFVGPSGCGKSTLLRMIAGLETITSG----DLFIGEKRMNDTPPAERGVGMVFQ 82 (381)
T ss_dssp EEEEETTEEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHHTSSCCSEE----EEEETTEECTTCCGGGSCEEEECT
T ss_pred EEEEECCEEEEeeeEEEECCC--CEEEEEcCCCchHHHHHHHHHcCCCCCCe----EEEECCEECCCCCHHHCCEEEEec
Confidence 367899999999999999999 99999999999999999999999884333 222221110 00011245788999
Q ss_pred CCCCcCCCCCchHH
Q 038053 80 TPGLFDSSAGSEFV 93 (231)
Q Consensus 80 tpg~~~~~~~~~~~ 93 (231)
.+.+++..++.+++
T Consensus 83 ~~~l~p~ltV~eni 96 (381)
T 3rlf_A 83 SYALYPHLSVAENM 96 (381)
T ss_dssp TCCCCTTSCHHHHH
T ss_pred CCcCCCCCCHHHHH
Confidence 99999987776654
No 92
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.32 E-value=6.1e-13 Score=102.17 Aligned_cols=141 Identities=11% Similarity=0.068 Sum_probs=80.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
.+|+++|.+|+|||||+|.|++...... ..+..+.......... .+ ..+.++||||....... .
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~-----------~ 87 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDKRFQPV--HDLTIGVEFGARMVNI-DGKQIKLQIWDTAGQESFRSI-----------T 87 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC-------CCSSEEEEEEEE-TTEEEEEEEECCTTGGGTSCC-----------C
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCC--CCCcccceeEEEEEEE-CCEEEEEEEEECCCchhhhhh-----------H
Confidence 7899999999999999999998764221 1122222222222222 33 46789999996543211 1
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH--------h-cCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhhh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------A-NGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKEY 162 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~~ 162 (231)
...+..+|++++|+|+++..+..+.. . ....|++ .+.++.|.. ...+....+ +++.+|++
T Consensus 88 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~pii-lv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 166 (191)
T 2a5j_A 88 RSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIM-LIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAK 166 (191)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEE-EEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTT
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEE-EEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCC
Confidence 12235789999999998532222111 1 1223332 233443311 012221122 66778999
Q ss_pred hHhhHHHHHHHHHHHHH
Q 038053 163 SKQEISKLMGQMQESYE 179 (231)
Q Consensus 163 ~~~~i~~l~~~i~~~~~ 179 (231)
++.|+++++..+.....
T Consensus 167 ~~~gi~~l~~~l~~~i~ 183 (191)
T 2a5j_A 167 TACNVEEAFINTAKEIY 183 (191)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999888876543
No 93
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.32 E-value=7.5e-13 Score=102.79 Aligned_cols=141 Identities=17% Similarity=0.128 Sum_probs=84.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
.+|+|+|.+|+|||||+|.|++...... ..+..+.......... .+ ..+.++||||....... .
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~-----------~ 74 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDDTYTND--YISTIGVDFKIKTVEL-DGKTVKLQIWDTAGQERFRTI-----------T 74 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCTT--CCCSSCCCEEEEEEEE-TTEEEEEEEECCTTTTTTTCC-----------C
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCcccceeEEEEEEE-CCEEEEEEEEeCCChHHHHHH-----------H
Confidence 6899999999999999999998764221 2223333222223333 33 36889999997543221 1
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH--------h-cCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhhh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------A-NGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKEY 162 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~~ 162 (231)
...+..+|++++|+|+++..+..... . ....|++ .+.++.|.. ...+....+ +++.+|++
T Consensus 75 ~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 153 (206)
T 2bcg_Y 75 SSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKL-LVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSAL 153 (206)
T ss_dssp GGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEE-EEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTT
T ss_pred HHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEE-EEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCC
Confidence 23457789999999998533322211 1 1222322 233333310 012222222 67789999
Q ss_pred hHhhHHHHHHHHHHHHH
Q 038053 163 SKQEISKLMGQMQESYE 179 (231)
Q Consensus 163 ~~~~i~~l~~~i~~~~~ 179 (231)
+|.|+++++..+.....
T Consensus 154 ~g~gi~~l~~~l~~~i~ 170 (206)
T 2bcg_Y 154 DSTNVEDAFLTMARQIK 170 (206)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999988877543
No 94
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.32 E-value=1.5e-11 Score=99.50 Aligned_cols=92 Identities=28% Similarity=0.363 Sum_probs=64.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053 23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG 102 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~ 102 (231)
..+|+++|.+|+|||||+|+|+|....... ...++|.......... .+..+.++||||+.+.....+.....+..++
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l- 112 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGEQVVRVS-PFQAEGLRPVMVSRTM-GGFTINIIDTPGLVEAGYVNHQALELIKGFL- 112 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSCCSCCC-SSCC-CCCCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHHT-
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCcccC-CCCCcceeeEEEEEEE-CCeeEEEEECCCCCCcccchHHHHHHHHHHH-
Confidence 379999999999999999999998753332 3455555555444445 7789999999999765443333333333333
Q ss_pred hhcCCccEEEEEEECC
Q 038053 103 LAKGGIHAVLVVFSVR 118 (231)
Q Consensus 103 ~~~~~~~~il~vvd~~ 118 (231)
....+|++++|+++.
T Consensus 113 -~~~~~~~il~V~~~d 127 (262)
T 3def_A 113 -VNRTIDVLLYVDRLD 127 (262)
T ss_dssp -TTCEECEEEEEEESS
T ss_pred -hcCCCCEEEEEEcCC
Confidence 235789999998876
No 95
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.32 E-value=1.3e-13 Score=111.25 Aligned_cols=85 Identities=16% Similarity=0.150 Sum_probs=62.2
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee---eEEeeCCcEEEEE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK---TTVLKDGQVVNVI 78 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~l~ 78 (231)
++.|++..++++++|++++| .+++|+|+||||||||+++|+|...+..| .+....... .... .....+++
T Consensus 22 ~~~y~~~~vl~~vsl~i~~G--ei~~l~G~NGsGKSTLlk~l~Gl~~p~~G----~I~~~g~~~~~~~~~~-~~~i~~v~ 94 (256)
T 1vpl_A 22 RKRIGKKEILKGISFEIEEG--EIFGLIGPNGAGKTTTLRIISTLIKPSSG----IVTVFGKNVVEEPHEV-RKLISYLP 94 (256)
T ss_dssp EEEETTEEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHTTSSCCSEE----EEEETTEETTTCHHHH-HTTEEEEC
T ss_pred EEEECCEEEEEeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhcCCCCCce----EEEECCEECCccHHHH-hhcEEEEc
Confidence 56788888999999999999 99999999999999999999999874332 222211100 0001 24578899
Q ss_pred eCCCCcCCCCCchHH
Q 038053 79 DTPGLFDSSAGSEFV 93 (231)
Q Consensus 79 Dtpg~~~~~~~~~~~ 93 (231)
+.|.+++..++.+++
T Consensus 95 q~~~l~~~ltv~enl 109 (256)
T 1vpl_A 95 EEAGAYRNMQGIEYL 109 (256)
T ss_dssp TTCCCCTTSBHHHHH
T ss_pred CCCCCCCCCcHHHHH
Confidence 999888766655544
No 96
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.32 E-value=1.7e-11 Score=92.16 Aligned_cols=142 Identities=18% Similarity=0.136 Sum_probs=77.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHH
Q 038053 23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKR 100 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~ 100 (231)
..+|+++|.+|+|||||+|.|++....... ...+.+... ..... .+ ..+.++||||..... ....
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~--~~~~~-~~~~~~~~~~D~~g~~~~~---------~~~~ 70 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYE--RTLTV-DGEDTTLVVVDTWEAEKLD---------KSWS 70 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEE--EEEEE-TTEEEEEEEECCC----------------CHH
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeE--EEEEE-CCEEEEEEEEecCCCCccc---------hhhh
Confidence 378999999999999999999998653322 223333221 12222 33 357799999975410 0111
Q ss_pred HhhhcCCccEEEEEEECCCCCCHHHHH------h----cCCCCcHHHHHHHHHhhH---------HHHHhhcc-chhhhh
Q 038053 101 IGLAKGGIHAVLVVFSVRSRFSQEEEA------A----NGGQPYTDEFLAELKRGA---------TELRDQQA-EVDSLK 160 (231)
Q Consensus 101 ~~~~~~~~~~il~vvd~~~~~~~~~~~------~----~~~~~~~~~~~~~~~~~~---------~~l~~~~~-~i~~is 160 (231)
....+..+|++++|+|+++..+..... . ....|++ .+.++.|... ..+....+ +++.+|
T Consensus 71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~pii-lv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 149 (175)
T 2nzj_A 71 QESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPII-LVGNKADLARCREVSVEEGRACAVVFDCKFIETS 149 (175)
T ss_dssp HHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEE-EEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECB
T ss_pred HHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEE-EEEEChhhccccccCHHHHHHHHHHcCCeEEEEe
Confidence 123346789999999998532222111 1 1133433 3334433110 11222222 677899
Q ss_pred hhhHhhHHHHHHHHHHHH
Q 038053 161 EYSKQEISKLMGQMQESY 178 (231)
Q Consensus 161 ~~~~~~i~~l~~~i~~~~ 178 (231)
+++|.|+++++..+....
T Consensus 150 a~~g~gi~~l~~~l~~~~ 167 (175)
T 2nzj_A 150 ATLQHNVAELFEGVVRQL 167 (175)
T ss_dssp TTTTBSHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHH
Confidence 999999999988887654
No 97
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.32 E-value=2.4e-12 Score=99.60 Aligned_cols=142 Identities=18% Similarity=0.132 Sum_probs=82.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEe-eCCcEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
..+|+|+|.+|||||||+|.|++..... ....++.......... .....+.++||||....... .
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-----------~ 89 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGEFSE---GYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSIL-----------P 89 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCS---CCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCC-----------C
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCCCCC---CCCCccceEEEEEEEECCEEEEEEEEECCCccchHHH-----------H
Confidence 3899999999999999999999876531 1111111111111111 13456789999997643221 2
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH------h----cCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA------A----NGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKE 161 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~------~----~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~ 161 (231)
...+..+|++++|+|+++..+..... . ....|++ .+.++.|.. ...+....+ +++.+|+
T Consensus 90 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 168 (201)
T 3oes_A 90 YSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVV-LVGNKADLSPEREVQAVEGKKLAESWGATFMESSA 168 (201)
T ss_dssp GGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEE-EEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCT
T ss_pred HHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECccCccccccCHHHHHHHHHHhCCeEEEEeC
Confidence 23456789999999998432222211 1 1123433 333443311 012222222 6778999
Q ss_pred hhHhhHHHHHHHHHHHHH
Q 038053 162 YSKQEISKLMGQMQESYE 179 (231)
Q Consensus 162 ~~~~~i~~l~~~i~~~~~ 179 (231)
+++.|+++++..+...+.
T Consensus 169 ~~~~~v~~l~~~l~~~i~ 186 (201)
T 3oes_A 169 RENQLTQGIFTKVIQEIA 186 (201)
T ss_dssp TCHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999888877543
No 98
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.32 E-value=9.4e-13 Score=101.98 Aligned_cols=141 Identities=14% Similarity=0.088 Sum_probs=58.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcce--eeeeeeEEeeC----CcEEEEEeCCCCcCCCCCchHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTK--TCEMKTTVLKD----GQVVNVIDTPGLFDSSAGSEFVGKEI 97 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~--~~~~~~~~~~~----~~~~~l~Dtpg~~~~~~~~~~~~~~~ 97 (231)
.+|+++|.+|+|||||+|.|++...... .....|. +........ . ...+.++||||... +
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~~~~~~--~~~~~t~~~~~~~~~~~~-~~~~~~~~~~l~Dt~G~~~-----------~ 86 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSKGSKFL--KDYAMTSGVEVVVAPVTI-PDTTVSVELFLLDTAGSDL-----------Y 86 (208)
T ss_dssp EEEEEC------------------------------------CEEEEC-TTSSEEEEEEEEETTTTHH-----------H
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccc--CCCCCccceEEEEEEEEE-CCcccEEEEEEEECCCcHH-----------H
Confidence 6999999999999999999998732111 1111122 222222333 3 34688999999642 2
Q ss_pred HHHHhhhcCCccEEEEEEECCCCCCHHHHH--------hc----CCCCcHHHHHHHHHhh----------HHHHHhhcc-
Q 038053 98 VKRIGLAKGGIHAVLVVFSVRSRFSQEEEA--------AN----GGQPYTDEFLAELKRG----------ATELRDQQA- 154 (231)
Q Consensus 98 ~~~~~~~~~~~~~il~vvd~~~~~~~~~~~--------~~----~~~~~~~~~~~~~~~~----------~~~l~~~~~- 154 (231)
.......+..+|++++|+|+++..+..... .. ...|++ .+.++.|.. ...+....+
T Consensus 87 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~pii-lv~nK~Dl~~~~~~v~~~~~~~~~~~~~~ 165 (208)
T 2yc2_C 87 KEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAV-LVANKTDLPPQRHQVRLDMAQDWATTNTL 165 (208)
T ss_dssp HHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEE-EEEECC-------CCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEE-EEEECcccchhhccCCHHHHHHHHHHcCC
Confidence 233445567899999999998543322211 11 233443 233333210 012222222
Q ss_pred chhhhhhhh-HhhHHHHHHHHHHHHH
Q 038053 155 EVDSLKEYS-KQEISKLMGQMQESYE 179 (231)
Q Consensus 155 ~i~~is~~~-~~~i~~l~~~i~~~~~ 179 (231)
+++.+|+++ +.|+.+++..+.....
T Consensus 166 ~~~~~Sa~~~~~gi~~l~~~i~~~~~ 191 (208)
T 2yc2_C 166 DFFDVSANPPGKDADAPFLSIATTFY 191 (208)
T ss_dssp EEEECCC-------CHHHHHHHHHHH
T ss_pred EEEEeccCCCCcCHHHHHHHHHHHHH
Confidence 677899999 9999999888877543
No 99
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.32 E-value=3.3e-13 Score=108.67 Aligned_cols=74 Identities=14% Similarity=0.009 Sum_probs=58.3
Q ss_pred CCCCC-CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeC
Q 038053 2 SSGMG-ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDT 80 (231)
Q Consensus 2 ~~~~~-~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dt 80 (231)
++.|+ +..++++++|++++| .+++|+|+||||||||+++|+|...+ ..|.+. . .....++++.
T Consensus 11 ~~~y~~~~~vl~~isl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p----~~G~I~---------~-~~~i~~v~q~ 74 (253)
T 2nq2_C 11 GFYYQAENFLFQQLNFDLNKG--DILAVLGQNGCGKSTLLDLLLGIHRP----IQGKIE---------V-YQSIGFVPQF 74 (253)
T ss_dssp EEEETTTTEEEEEEEEEEETT--CEEEEECCSSSSHHHHHHHHTTSSCC----SEEEEE---------E-CSCEEEECSC
T ss_pred EEEeCCCCeEEEEEEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CCcEEE---------E-eccEEEEcCC
Confidence 56777 788999999999999 99999999999999999999999873 333222 1 4557788888
Q ss_pred CCCcCCCCCch
Q 038053 81 PGLFDSSAGSE 91 (231)
Q Consensus 81 pg~~~~~~~~~ 91 (231)
|.+++..++.+
T Consensus 75 ~~~~~~~tv~e 85 (253)
T 2nq2_C 75 FSSPFAYSVLD 85 (253)
T ss_dssp CCCSSCCBHHH
T ss_pred CccCCCCCHHH
Confidence 88776554433
No 100
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.32 E-value=1.2e-12 Score=115.21 Aligned_cols=143 Identities=13% Similarity=0.101 Sum_probs=90.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
.+|+|+|.+|+|||||+|.|++..... ...|.......... .+..+.++||||...... ....
T Consensus 323 ~ki~lvG~~nvGKSsLl~~l~~~~~~~-----~~~T~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~-----------~~~~ 385 (497)
T 3lvq_E 323 MRILMLGLDAAGKTTILYKLKLGQSVT-----TIPTVGFNVETVTY-KNVKFNVWDVGGQDKIRP-----------LWRH 385 (497)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCCC-----CCCCSSEEEEEEES-SSCEEEEEEECCCGGGSG-----------GGGG
T ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCC-----cCCccceeEEEEEe-CCEEEEEEECCCcHHHHH-----------HHHH
Confidence 799999999999999999999887421 12244444444444 678899999999654221 1234
Q ss_pred hcCCccEEEEEEECCCCCCHHHHH------h----cCCCCcHHHHHHHHHhhH----HHHHhhcc---------chhhhh
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEEEA------A----NGGQPYTDEFLAELKRGA----TELRDQQA---------EVDSLK 160 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~~~------~----~~~~~~~~~~~~~~~~~~----~~l~~~~~---------~i~~is 160 (231)
.+..+|++++|+|+++..+..+.. . ....|++ .+.++.|... ..+...+. +++.+|
T Consensus 386 ~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-lv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 464 (497)
T 3lvq_E 386 YYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIIL-IFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSC 464 (497)
T ss_dssp GGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEE-EEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECB
T ss_pred HhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEE-EEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEEE
Confidence 567899999999998543322211 1 1234443 3445544210 22322221 477899
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHH
Q 038053 161 EYSKQEISKLMGQMQESYEDQIKR 184 (231)
Q Consensus 161 ~~~~~~i~~l~~~i~~~~~~~~~~ 184 (231)
|++|.|++++++.+.+.+..+..+
T Consensus 465 A~~g~gi~~l~~~l~~~~~~~~~~ 488 (497)
T 3lvq_E 465 ATSGDGLYEGLTWLTSNYKSKLAA 488 (497)
T ss_dssp TTTTBTHHHHHHHHHHHCC-----
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999998876555443
No 101
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.31 E-value=2.6e-12 Score=100.50 Aligned_cols=139 Identities=15% Similarity=0.046 Sum_probs=81.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceee--eeeeEEeeC-----------CcEEEEEeCCCCcCCCCCc
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTC--EMKTTVLKD-----------GQVVNVIDTPGLFDSSAGS 90 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~--~~~~~~~~~-----------~~~~~l~Dtpg~~~~~~~~ 90 (231)
.+|+|+|.+|||||||+|.|++.... .....|... ......... ...+.++||||...
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~----- 96 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDNKFN----PKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQER----- 96 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCSCCC----CEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHH-----
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCC----cCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHh-----
Confidence 68999999999999999999987542 111112111 111122211 35688999999432
Q ss_pred hHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH-----hc-----CCCCcHHHHHHHHHhhH---------HHHHh
Q 038053 91 EFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA-----AN-----GGQPYTDEFLAELKRGA---------TELRD 151 (231)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~-----~~-----~~~~~~~~~~~~~~~~~---------~~l~~ 151 (231)
+.......+..+|++++|+|+++..+..+.. .. ...|++ .++++.|... ..+..
T Consensus 97 ------~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~pii-lV~NK~Dl~~~~~v~~~~~~~~~~ 169 (217)
T 2f7s_A 97 ------FRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV-LIGNKADLPDQREVNERQARELAD 169 (217)
T ss_dssp ------HHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEE-EEEECTTCGGGCCSCHHHHHHHHH
T ss_pred ------HHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEE-EEEECCccccccccCHHHHHHHHH
Confidence 2222334457889999999998543332222 11 223333 3344443110 12222
Q ss_pred hcc-chhhhhhhhHhhHHHHHHHHHHHH
Q 038053 152 QQA-EVDSLKEYSKQEISKLMGQMQESY 178 (231)
Q Consensus 152 ~~~-~i~~is~~~~~~i~~l~~~i~~~~ 178 (231)
..+ +++.+|++++.|+++++..+.+..
T Consensus 170 ~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 197 (217)
T 2f7s_A 170 KYGIPYFETSAATGQNVEKAVETLLDLI 197 (217)
T ss_dssp HTTCCEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred HCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 222 677899999999999988877654
No 102
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.31 E-value=1.6e-12 Score=100.12 Aligned_cols=138 Identities=12% Similarity=0.066 Sum_probs=80.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 22 GKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 22 ~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
...+|+++|.+|||||||+|.+++.......+ |.......... .+..+.++||||....... .
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~-----t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~-----------~ 90 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIGFNVETVEY-KNICFTVWDVGGQDKIRPL-----------W 90 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCEEEEE-----ETTEEEEEEEE-TTEEEEEEECC-----CTT-----------H
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCccccCC-----cCceeEEEEEE-CCEEEEEEECCCCHhHHHH-----------H
Confidence 34899999999999999999998765421111 22222223333 6778899999997542211 1
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH------hc----CCCCcHHHHHHHHHhhH----HHHHhhcc---------chhh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA------AN----GGQPYTDEFLAELKRGA----TELRDQQA---------EVDS 158 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~----~~l~~~~~---------~i~~ 158 (231)
...+..+|++++|+|+++..+..... .. ...|++ .+.++.|... .++...+. +++.
T Consensus 91 ~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~pii-lv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~ 169 (192)
T 2b6h_A 91 RHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLL-VFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQA 169 (192)
T ss_dssp HHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEE-EEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEE
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEE-EEEECCCCCCCCCHHHHHHHhCcccccCCceEEEE
Confidence 11235679999999998543322211 11 133333 3344433110 12222211 4677
Q ss_pred hhhhhHhhHHHHHHHHHHH
Q 038053 159 LKEYSKQEISKLMGQMQES 177 (231)
Q Consensus 159 is~~~~~~i~~l~~~i~~~ 177 (231)
+|+++|.|+++++..+...
T Consensus 170 ~SA~~g~gi~~l~~~l~~~ 188 (192)
T 2b6h_A 170 TCATQGTGLYDGLDWLSHE 188 (192)
T ss_dssp CBTTTTBTHHHHHHHHHHH
T ss_pred CcCCCcCCHHHHHHHHHHH
Confidence 9999999999998887654
No 103
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.31 E-value=2.3e-12 Score=99.79 Aligned_cols=141 Identities=12% Similarity=0.102 Sum_probs=78.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
.+|+++|.+|||||||+|.|++...... ..+..+.......... .+ ..+.++||||...... ..
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~-----------~~ 91 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIENKFKQD--SNHTIGVEFGSRVVNV-GGKTVKLQIWDTAGQERFRS-----------VT 91 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC--------------CCEEEEEEEE-TTEEEEEEEECCTTHHHHSC-----------CC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCcc--CCCcccceeEEEEEEE-CCeeeEEEEEcCCCcHhHHH-----------HH
Confidence 7999999999999999999998764221 1222222222222222 33 5788999999532111 11
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhhH------H---HHHhhcc-chhhhhhh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRGA------T---ELRDQQA-EVDSLKEY 162 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~------~---~l~~~~~-~i~~is~~ 162 (231)
...+..+|++++|+|+++..+..... .....|++ .+.++.|... . .+....+ +++.+|++
T Consensus 92 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~ 170 (200)
T 2o52_A 92 RSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVI-LCGNKKDLDPEREVTFLEASRFAQENELMFLETSAL 170 (200)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEE-EEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTT
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEE-EEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCC
Confidence 22346789999999998533222211 11233333 3334443210 1 1111112 56778999
Q ss_pred hHhhHHHHHHHHHHHHH
Q 038053 163 SKQEISKLMGQMQESYE 179 (231)
Q Consensus 163 ~~~~i~~l~~~i~~~~~ 179 (231)
+|.|+++++..+.....
T Consensus 171 ~g~gi~~l~~~l~~~i~ 187 (200)
T 2o52_A 171 TGENVEEAFLKCARTIL 187 (200)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999888876543
No 104
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.31 E-value=1.4e-13 Score=111.39 Aligned_cols=86 Identities=16% Similarity=0.102 Sum_probs=61.3
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee---E--EeeCCcEEE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT---T--VLKDGQVVN 76 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~---~--~~~~~~~~~ 76 (231)
++.|++..++++++|++++| .+++|+|+||||||||+++|+|...+.. |.+........ . ........+
T Consensus 31 ~~~y~~~~vL~~vsl~i~~G--ei~~liG~NGsGKSTLlk~l~Gl~~p~~----G~I~~~g~~i~~~~~~~~~~~~~i~~ 104 (263)
T 2olj_A 31 KKSFGSLEVLKGINVHIREG--EVVVVIGPSGSGKSTFLRCLNLLEDFDE----GEIIIDGINLKAKDTNLNKVREEVGM 104 (263)
T ss_dssp EEEETTEEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHTTSSCCSE----EEEEETTEESSSTTCCHHHHHHHEEE
T ss_pred EEEECCEEEEEeeEEEEcCC--CEEEEEcCCCCcHHHHHHHHHcCCCCCC----cEEEECCEECCCccccHHHHhCcEEE
Confidence 56788888999999999999 9999999999999999999999987433 33322211100 0 000234678
Q ss_pred EEeCCCCcCCCCCchHH
Q 038053 77 VIDTPGLFDSSAGSEFV 93 (231)
Q Consensus 77 l~Dtpg~~~~~~~~~~~ 93 (231)
+++.|.+++..++.+++
T Consensus 105 v~Q~~~l~~~~tv~e~l 121 (263)
T 2olj_A 105 VFQRFNLFPHMTVLNNI 121 (263)
T ss_dssp ECSSCCCCTTSCHHHHH
T ss_pred EeCCCcCCCCCCHHHHH
Confidence 89988888766555443
No 105
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.31 E-value=2.5e-12 Score=99.97 Aligned_cols=139 Identities=15% Similarity=0.103 Sum_probs=80.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCc--EEEEEeCCCCcCCCCCchHHHHHHHH
Q 038053 22 GKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAGSEFVGKEIVK 99 (231)
Q Consensus 22 ~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~Dtpg~~~~~~~~~~~~~~~~~ 99 (231)
...+|+++|.+|||||||+|.+++..... ...+++.......... .+. .+.++||||..... .
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~---~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~-----------~ 93 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPG---EYIPTVFDNYSANVMV-DGKPVNLGLWDTAGLEDYD-----------R 93 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSCCCC----CCCCSEEEEEEEEEC-C-CEEEEEEEEECCSGGGT-----------T
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCCCCC---CcCCeecceeEEEEEE-CCEEEEEEEEECCCchhhH-----------H
Confidence 34899999999999999999999654311 1222222222222222 333 45599999975421 1
Q ss_pred HHhhhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhhH---------------------HHH
Q 038053 100 RIGLAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRGA---------------------TEL 149 (231)
Q Consensus 100 ~~~~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~---------------------~~l 149 (231)
.....+..+|++++|+|+++..+..+.. .....|++ .+.++.|... ..+
T Consensus 94 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 172 (204)
T 4gzl_A 94 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII-LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM 172 (204)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEE-EEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE-EEEechhhccchhhhhhhhccccccccHHHHHHH
Confidence 1223457889999999998543333221 11234443 2233333100 011
Q ss_pred Hhhcc--chhhhhhhhHhhHHHHHHHHHH
Q 038053 150 RDQQA--EVDSLKEYSKQEISKLMGQMQE 176 (231)
Q Consensus 150 ~~~~~--~i~~is~~~~~~i~~l~~~i~~ 176 (231)
....+ +++.+||++|.|+++++..+.+
T Consensus 173 ~~~~~~~~~~~~SA~~g~gi~~l~~~l~~ 201 (204)
T 4gzl_A 173 AKEIGAVKYLECSALTQRGLKTVFDEAIR 201 (204)
T ss_dssp HHHTTCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHhcCCcEEEEeeCCCCCCHHHHHHHHHH
Confidence 11122 4777999999999999888765
No 106
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.31 E-value=1.8e-13 Score=109.45 Aligned_cols=83 Identities=17% Similarity=0.117 Sum_probs=59.0
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-E---EeeCCcEEEE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-T---VLKDGQVVNV 77 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-~---~~~~~~~~~l 77 (231)
++.|++..++++++|++++| .+++|+|+||||||||+++|+|...+.. |.+........ . ........++
T Consensus 13 ~~~y~~~~vl~~vsl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p~~----G~i~~~g~~~~~~~~~~~~~~~i~~v 86 (240)
T 1ji0_A 13 HVYYGAIHAIKGIDLKVPRG--QIVTLIGANGAGKTTTLSAIAGLVRAQK----GKIIFNGQDITNKPAHVINRMGIALV 86 (240)
T ss_dssp EEEETTEEEEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHTTSSCCSE----EEEEETTEECTTCCHHHHHHTTEEEE
T ss_pred EEEECCeeEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCC----ceEEECCEECCCCCHHHHHhCCEEEE
Confidence 56788888999999999999 9999999999999999999999987433 32222211100 0 0002337788
Q ss_pred EeCCCCcCCCCCc
Q 038053 78 IDTPGLFDSSAGS 90 (231)
Q Consensus 78 ~Dtpg~~~~~~~~ 90 (231)
++.|.+++..++.
T Consensus 87 ~q~~~l~~~ltv~ 99 (240)
T 1ji0_A 87 PEGRRIFPELTVY 99 (240)
T ss_dssp CSSCCCCTTSBHH
T ss_pred ecCCccCCCCcHH
Confidence 8988877654433
No 107
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.31 E-value=5.9e-13 Score=102.09 Aligned_cols=141 Identities=11% Similarity=0.083 Sum_probs=81.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEee-CCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG 102 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~ 102 (231)
.+|+++|.+|+|||||+|.|++...... ..+..+........... ....+.++||||....... ..
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-----------~~ 82 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDTFDPE--LAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTL-----------TP 82 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTT--CCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCS-----------HH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCcc--CCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhh-----------hH
Confidence 6999999999999999999998764211 12222222222222221 2346788999997542211 11
Q ss_pred hhcCCccEEEEEEECCCCCCHHHHH-----h-c----CCCCcHHHHHHHHHhh--------HHHHHhhcc-chhhhhhhh
Q 038053 103 LAKGGIHAVLVVFSVRSRFSQEEEA-----A-N----GGQPYTDEFLAELKRG--------ATELRDQQA-EVDSLKEYS 163 (231)
Q Consensus 103 ~~~~~~~~il~vvd~~~~~~~~~~~-----~-~----~~~~~~~~~~~~~~~~--------~~~l~~~~~-~i~~is~~~ 163 (231)
..+..+|++++|+|+++..+..... . . ...|++ .++++.|.. ...+....+ +++.+|+++
T Consensus 83 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (195)
T 1x3s_A 83 SYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNM-LVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKT 161 (195)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEE-EEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTT
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEE-EEEECCcCcccccCHHHHHHHHHHcCCEEEEecCCC
Confidence 2336789999999998532222211 1 1 123332 334444311 011211122 567789999
Q ss_pred HhhHHHHHHHHHHHH
Q 038053 164 KQEISKLMGQMQESY 178 (231)
Q Consensus 164 ~~~i~~l~~~i~~~~ 178 (231)
+.|+++++..+.+.+
T Consensus 162 ~~gi~~l~~~l~~~~ 176 (195)
T 1x3s_A 162 CDGVQCAFEELVEKI 176 (195)
T ss_dssp CTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999988877654
No 108
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.30 E-value=1.9e-12 Score=97.64 Aligned_cols=140 Identities=18% Similarity=0.119 Sum_probs=82.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
.+|+++|.+|+|||||+|.+++...... ..+..+.......... .+ ..+.++||||... +....
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~-----------~~~~~ 73 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTNKFDTQ--LFHTIGVEFLNKDLEV-DGHFVTMQIWDTAGQER-----------FRSLR 73 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCC------CCSEEEEEEEEEE-TTEEEEEEEEECCCCGG-----------GHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC--CCCceeeeEEEEEEEE-CCEEEEEEEEeCCCchh-----------hhhhH
Confidence 6899999999999999999997654211 1222222222222222 33 3688999999543 12223
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH---------hc----CCCCcHHHHHHHHHhh--------HHHHHh-hc-cchhh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA---------AN----GGQPYTDEFLAELKRG--------ATELRD-QQ-AEVDS 158 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~---------~~----~~~~~~~~~~~~~~~~--------~~~l~~-~~-~~i~~ 158 (231)
...+..+|++++|+|+++..+..... .. ...|++ .+.++.|.. ...+.. .. .+++.
T Consensus 74 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i-~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 152 (177)
T 1wms_A 74 TPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFV-ILGNKIDISERQVSTEEAQAWCRDNGDYPYFE 152 (177)
T ss_dssp GGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEE-EEEECTTCSSCSSCHHHHHHHHHHTTCCCEEE
T ss_pred HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEE-EEEECCcccccccCHHHHHHHHHhcCCceEEE
Confidence 44567889999999998532221111 11 233433 333443310 012222 11 26778
Q ss_pred hhhhhHhhHHHHHHHHHHHH
Q 038053 159 LKEYSKQEISKLMGQMQESY 178 (231)
Q Consensus 159 is~~~~~~i~~l~~~i~~~~ 178 (231)
+|+++|.|+++++..+....
T Consensus 153 ~Sa~~~~gi~~l~~~l~~~~ 172 (177)
T 1wms_A 153 TSAKDATNVAAAFEEAVRRV 172 (177)
T ss_dssp CCTTTCTTHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHH
Confidence 99999999999988876643
No 109
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.30 E-value=1.8e-12 Score=96.72 Aligned_cols=139 Identities=14% Similarity=0.120 Sum_probs=78.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEee-CCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG 102 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~ 102 (231)
.+|+++|.+|||||||+|.+++..... ...+++........... ....+.++||||...... +. ..
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~----~~---~~--- 70 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIFVE---KYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTA----MR---DL--- 70 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCC---SCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTT----HH---HH---
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC---CCCCCccceEEEEEEECCEEEEEEEEECCChHHHHH----HH---HH---
Confidence 689999999999999999999865321 11112211111112221 234678999999764321 11 11
Q ss_pred hhcCCccEEEEEEECCCCCCHHHHH---------h-cCCCCcHHHHHHHHHhh---------HHHHHhhc--cchhhhhh
Q 038053 103 LAKGGIHAVLVVFSVRSRFSQEEEA---------A-NGGQPYTDEFLAELKRG---------ATELRDQQ--AEVDSLKE 161 (231)
Q Consensus 103 ~~~~~~~~il~vvd~~~~~~~~~~~---------~-~~~~~~~~~~~~~~~~~---------~~~l~~~~--~~i~~is~ 161 (231)
.+..+|++++|+|+++..+..... . ....|++ .+.++.|.. ...+.... .+++.+|+
T Consensus 71 -~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 148 (167)
T 1c1y_A 71 -YMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMI-LVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSA 148 (167)
T ss_dssp -HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEE-EEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBT
T ss_pred -HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEE-EEEECccccccccCCHHHHHHHHHHccCCcEEEecC
Confidence 123469999999998532111111 1 1234433 333443310 01222222 26778999
Q ss_pred hhHhhHHHHHHHHHHH
Q 038053 162 YSKQEISKLMGQMQES 177 (231)
Q Consensus 162 ~~~~~i~~l~~~i~~~ 177 (231)
++|.|+++++..+.+.
T Consensus 149 ~~~~gi~~l~~~l~~~ 164 (167)
T 1c1y_A 149 KSKINVNEIFYDLVRQ 164 (167)
T ss_dssp TTTBSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999998887654
No 110
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.30 E-value=5.3e-12 Score=94.30 Aligned_cols=139 Identities=14% Similarity=0.090 Sum_probs=79.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEee-CCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG 102 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~ 102 (231)
.+|+++|.+|+|||||+|.+++...... ..+..+........... ....+.++||||..... . ...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~----~-------~~~ 70 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAEN--KEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFA----S-------LAP 70 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTT--CCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG----G-------GHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEEEECCEEEEEEEEECCCChhhh----h-------hhh
Confidence 6899999999999999999998764221 12222222222222221 12367899999965311 1 112
Q ss_pred hhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhh------------HHHHHhhcc-chhhhh
Q 038053 103 LAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRG------------ATELRDQQA-EVDSLK 160 (231)
Q Consensus 103 ~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~------------~~~l~~~~~-~i~~is 160 (231)
..+..+|++++|+|+++..+..+.. .....|++ .+.++.|.. ...+....+ +++.+|
T Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~S 149 (170)
T 1ek0_A 71 XYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIA-LVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETS 149 (170)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEE-EEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECC
T ss_pred hhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEE-EEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEe
Confidence 2346789999999998543222211 11233332 233333310 011211122 677889
Q ss_pred hhhHhhHHHHHHHHHH
Q 038053 161 EYSKQEISKLMGQMQE 176 (231)
Q Consensus 161 ~~~~~~i~~l~~~i~~ 176 (231)
++++.|+++++..+.+
T Consensus 150 a~~~~gi~~l~~~l~~ 165 (170)
T 1ek0_A 150 AKTGENVNDVFLGIGE 165 (170)
T ss_dssp TTTCTTHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHH
Confidence 9999999999887754
No 111
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.30 E-value=7.8e-13 Score=98.83 Aligned_cols=139 Identities=17% Similarity=0.098 Sum_probs=80.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeC--CcEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
.+|+++|++|+|||||+|.|++...... ..+..+.+........ . ...+.++||||....... .
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~-----------~ 71 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKD--YKKTIGVDFLERQIQV-NDEDVRLMLWDTAGQEEFDAI-----------T 71 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCCC--SSCCCSSSEEEEEEEE-TTEEEEEEEECCTTGGGTTCC-----------C
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCCCCC--CCCceEEEEEEEEEEE-CCEEEEEEEEcCCCcHhHHHH-----------H
Confidence 6899999999999999999998754211 1222222222222222 2 346789999996542211 1
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH--------hcCCCCcHHHHHHHHHhh------H---HHHHhhcc-chhhhhhhh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------ANGGQPYTDEFLAELKRG------A---TELRDQQA-EVDSLKEYS 163 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~------~---~~l~~~~~-~i~~is~~~ 163 (231)
...+..+|++++|+|+++..+..... .....|++ .+.++.|.. . ..+....+ +++.+|+++
T Consensus 72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 150 (168)
T 1z2a_A 72 KAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTA-LVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKE 150 (168)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEE-EEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTT
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEE-EEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCC
Confidence 12235789999999998532222111 11233433 233443310 0 12222222 677899999
Q ss_pred HhhHHHHHHHHHHH
Q 038053 164 KQEISKLMGQMQES 177 (231)
Q Consensus 164 ~~~i~~l~~~i~~~ 177 (231)
+.|+++++..+...
T Consensus 151 ~~~i~~l~~~l~~~ 164 (168)
T 1z2a_A 151 DLNVSEVFKYLAEK 164 (168)
T ss_dssp TBSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 99999988887664
No 112
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.30 E-value=8.9e-13 Score=100.23 Aligned_cols=140 Identities=12% Similarity=0.087 Sum_probs=62.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
.+|+++|.+|+|||||+|.+++...... ..++++.+........ .+ ..+.++||||.... ....
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~-----------~~~~ 74 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSEDAFNST--FISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERF-----------RTIT 74 (183)
T ss_dssp EEEEEECCCCC----------------C--HHHHHCEEEEEEEEEE-TTEEEEEEEEEC--------------------C
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCC--CCCcccceeEEEEEEE-CCEEEEEEEEcCCCChhh-----------hhhH
Confidence 6899999999999999999997653111 1122222222222222 33 56889999996531 1112
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH--------h-cCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhhh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------A-NGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKEY 162 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~~ 162 (231)
...+..+|++++|+|+++..+..... . ....|++ .+.++.|.. ...+....+ +++.+|++
T Consensus 75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-lv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 153 (183)
T 2fu5_C 75 TAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKM-ILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAK 153 (183)
T ss_dssp CTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEE-EEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC-
T ss_pred HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEE-EEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCC
Confidence 33457889999999998533222211 1 1223333 333443310 012222222 67789999
Q ss_pred hHhhHHHHHHHHHHHH
Q 038053 163 SKQEISKLMGQMQESY 178 (231)
Q Consensus 163 ~~~~i~~l~~~i~~~~ 178 (231)
++.|+++++..+....
T Consensus 154 ~~~~i~~l~~~l~~~i 169 (183)
T 2fu5_C 154 ANINVENAFFTLARDI 169 (183)
T ss_dssp --CCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999988887654
No 113
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.29 E-value=1.1e-12 Score=99.80 Aligned_cols=140 Identities=19% Similarity=0.185 Sum_probs=79.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCc--EEEEEeCCCCcCCCCCchHHHHHHHHH
Q 038053 23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAGSEFVGKEIVKR 100 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~Dtpg~~~~~~~~~~~~~~~~~~ 100 (231)
..+|+++|.+|+|||||+|.+++..... ...+++.......... .+. .+.++||||....... . .
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~~~~~---~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~----~---~-- 84 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQKIFVD---DYDPTIEDSYLKHTEI-DNQWAILDVLDTAGQEEFSAM----R---E-- 84 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCS---CCCTTCCEEEEEEEEE-TTEEEEEEEEECCSCGGGCSS----H---H--
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCC---CCCCCccceeEEEEEe-CCcEEEEEEEECCCchhhHHH----H---H--
Confidence 3799999999999999999999764321 1112222112222222 444 3456999996542211 1 1
Q ss_pred HhhhcCCccEEEEEEECCCCCCHHHHH----------hcCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhh
Q 038053 101 IGLAKGGIHAVLVVFSVRSRFSQEEEA----------ANGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLK 160 (231)
Q Consensus 101 ~~~~~~~~~~il~vvd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is 160 (231)
..+..+|++++|+|+++..+..... .....|++ .+.++.|.. ...+....+ +++.+|
T Consensus 85 --~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 161 (183)
T 3kkq_A 85 --QYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMI-LVANKVDLMHLRKVTRDQGKEMATKYNIPYIETS 161 (183)
T ss_dssp --HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEE-EEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEB
T ss_pred --HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE-EEEECCCchhccCcCHHHHHHHHHHhCCeEEEec
Confidence 1223579999999998532211111 11233333 333443310 012222222 677889
Q ss_pred hh-hHhhHHHHHHHHHHHH
Q 038053 161 EY-SKQEISKLMGQMQESY 178 (231)
Q Consensus 161 ~~-~~~~i~~l~~~i~~~~ 178 (231)
++ ++.|+++++..+.+.+
T Consensus 162 a~~~~~~v~~l~~~l~~~i 180 (183)
T 3kkq_A 162 AKDPPLNVDKTFHDLVRVI 180 (183)
T ss_dssp CSSSCBSHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHH
Confidence 99 9999999998887754
No 114
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.29 E-value=1.4e-12 Score=98.57 Aligned_cols=141 Identities=13% Similarity=0.126 Sum_probs=82.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC---cEEEEEeCCCCcCCCCCchHHHHHHHH
Q 038053 23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG---QVVNVIDTPGLFDSSAGSEFVGKEIVK 99 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~---~~~~l~Dtpg~~~~~~~~~~~~~~~~~ 99 (231)
..+|+++|.+|||||||+|.+++...... ..+....+........ .+ ..+.++||||.......
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~~~~Dt~G~~~~~~~---------- 72 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQETFGKQ--YKQTIGLDFFLRRITL-PGNLNVTLQIWDIGGQTIGGKM---------- 72 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGGGTTHH--HHHTTTSSEEEEEEEE-TTTEEEEEEEEECTTCCTTCTT----------
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCcCCCC--CCCceeEEEEEEEEEe-CCCCEEEEEEEECCCCccccch----------
Confidence 37899999999999999999998753211 1111112222222333 33 57889999997543211
Q ss_pred HHhhhcCCccEEEEEEECCCCCCHHHHH------h-----cCCCCcHHHHHHHHHhhH---------HHHHhhcc-chhh
Q 038053 100 RIGLAKGGIHAVLVVFSVRSRFSQEEEA------A-----NGGQPYTDEFLAELKRGA---------TELRDQQA-EVDS 158 (231)
Q Consensus 100 ~~~~~~~~~~~il~vvd~~~~~~~~~~~------~-----~~~~~~~~~~~~~~~~~~---------~~l~~~~~-~i~~ 158 (231)
....+..+|++++|+|+++..+..+.. . ....|.++.+.++.|... ..+....+ +++.
T Consensus 73 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 151 (178)
T 2hxs_A 73 -LDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHF 151 (178)
T ss_dssp -HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEE
T ss_pred -hhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEE
Confidence 112246789999999998533322211 0 113442223344443210 12222222 6778
Q ss_pred hhhhhHhhHHHHHHHHHHH
Q 038053 159 LKEYSKQEISKLMGQMQES 177 (231)
Q Consensus 159 is~~~~~~i~~l~~~i~~~ 177 (231)
+|+++|.|+++++..+...
T Consensus 152 ~Sa~~~~gi~~l~~~l~~~ 170 (178)
T 2hxs_A 152 VSAKTGDSVFLCFQKVAAE 170 (178)
T ss_dssp ECTTTCTTHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHH
Confidence 9999999999998887664
No 115
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.29 E-value=1.3e-12 Score=100.14 Aligned_cols=141 Identities=11% Similarity=0.142 Sum_probs=79.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHH
Q 038053 23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKR 100 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~ 100 (231)
..+|+++|.+|||||||+|.|++...... ..+..+.+........ .+ ..+.++||||... ... ..
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~-------~~~---~~ 86 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAGRFPDR--TEATIGVDFRERAVDI-DGERIKIQLWDTAGQER-------FRK---SM 86 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCSS--CCCCCSCCEEEEEEEE-TTEEEEEEEEECCCSHH-------HHT---TT
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCC--CCCCcceEEEEEEEEE-CCEEEEEEEEECCCchh-------hhh---hh
Confidence 37999999999999999999997654221 1222222222222222 33 4688999999542 110 11
Q ss_pred HhhhcCCccEEEEEEECCCCCCHHHHH--------h--cCCCCcHHHHHHHHHhhH---------HHHHhhcc-chhhhh
Q 038053 101 IGLAKGGIHAVLVVFSVRSRFSQEEEA--------A--NGGQPYTDEFLAELKRGA---------TELRDQQA-EVDSLK 160 (231)
Q Consensus 101 ~~~~~~~~~~il~vvd~~~~~~~~~~~--------~--~~~~~~~~~~~~~~~~~~---------~~l~~~~~-~i~~is 160 (231)
....+..+|++++|+|+++..+..... . ....|++ .+.++.|... ..+....+ +++.+|
T Consensus 87 ~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 165 (189)
T 1z06_A 87 VQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRI-LVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETS 165 (189)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEE-EEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECC
T ss_pred hHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECccccccceeCHHHHHHHHHHcCCEEEEEe
Confidence 222346789999999998432211111 1 2233433 3334433110 12222222 677789
Q ss_pred hhhH---hhHHHHHHHHHHH
Q 038053 161 EYSK---QEISKLMGQMQES 177 (231)
Q Consensus 161 ~~~~---~~i~~l~~~i~~~ 177 (231)
++++ .++.+++..+...
T Consensus 166 a~~~~~~~~i~~l~~~l~~~ 185 (189)
T 1z06_A 166 AKNPNDNDHVEAIFMTLAHK 185 (189)
T ss_dssp SSSGGGGSCHHHHHHHHC--
T ss_pred CCcCCcccCHHHHHHHHHHH
Confidence 9999 8998888877554
No 116
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.28 E-value=1.8e-12 Score=97.04 Aligned_cols=141 Identities=17% Similarity=0.107 Sum_probs=75.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
.+|+++|.+|+|||||+|.+++...... .....+.+........ .+ ..+.++||||...... .+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~-------~~~~-- 70 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHA--HEMENSEDTYERRIMV-DKEEVTLIVYDIWEQGDAGG-------WLQD-- 70 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC--------------CEEEEEEEE-TTEEEEEEEECCCCC---------------C--
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCccc--ccCCCcCCeeeEEEEE-CCeEEEEEEEECCCccccch-------hhhh--
Confidence 6899999999999999999997654222 1222222222222222 33 4567899999764211 0111
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH--------hc--CCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------AN--GGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKE 161 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~~--~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~ 161 (231)
..+..+|++++|+|+++.-+..... .. ...|++ .+.++.|.. ...+....+ +++.+|+
T Consensus 71 -~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 148 (169)
T 3q85_A 71 -HCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVI-LVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSA 148 (169)
T ss_dssp -HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEE-EEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBT
T ss_pred -hhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEE-EEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecC
Confidence 1123479999999998532211111 11 134443 333443311 012222222 6778999
Q ss_pred hhHhhHHHHHHHHHHHH
Q 038053 162 YSKQEISKLMGQMQESY 178 (231)
Q Consensus 162 ~~~~~i~~l~~~i~~~~ 178 (231)
+++.|+++++..+....
T Consensus 149 ~~~~~v~~l~~~l~~~i 165 (169)
T 3q85_A 149 ALHHNTRELFEGAVRQI 165 (169)
T ss_dssp TTTBSHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHH
Confidence 99999999988887643
No 117
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.28 E-value=5.8e-13 Score=106.16 Aligned_cols=86 Identities=15% Similarity=0.024 Sum_probs=59.7
Q ss_pred CCCCCC----cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-EE------ee
Q 038053 2 SSGMGE----RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-TV------LK 70 (231)
Q Consensus 2 ~~~~~~----~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-~~------~~ 70 (231)
++.|++ ..++++++|++++| ..++|+|+||||||||+++|+|...+.. |.+........ .. ..
T Consensus 8 ~~~y~~~~~~~~~L~~isl~i~~G--e~~~iiG~nGsGKSTLl~~l~Gl~~p~~----G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 8 TKTYKMGEEIIYALKNVNLNIKEG--EFVSIMGPSGSGKSTMLNIIGCLDKPTE----GEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEETTEEEEEEEEEEEEECTT--CEEEEECSTTSSHHHHHHHHTTSSCCSE----EEEEETTEECTTCCHHHHHHHH
T ss_pred EEEeCCCCcceeeEEeeeEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCCCc----eEEEECCEEcccCCHHHHHHHh
Confidence 455653 46899999999999 9999999999999999999999987433 33322211100 00 00
Q ss_pred CCcEEEEEeCCCCcCCCCCchHH
Q 038053 71 DGQVVNVIDTPGLFDSSAGSEFV 93 (231)
Q Consensus 71 ~~~~~~l~Dtpg~~~~~~~~~~~ 93 (231)
.....++++.|.+++..++.+++
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl 104 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENV 104 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHH
Confidence 12478899999988866655443
No 118
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.28 E-value=2.4e-12 Score=97.15 Aligned_cols=139 Identities=12% Similarity=0.060 Sum_probs=80.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
.+|+++|.+|+|||||+|.+++...... ..+..+.+........ .+ ..+.++||||...... . .
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~----~-------~ 80 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDSFDNT--YQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRS----L-------I 80 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSS--CCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGGG----G-------S
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC--CCCceeeEEEEEEEEE-CCeEEEEEEEECCCcHHHHH----H-------H
Confidence 6899999999999999999997654211 2233333333333333 33 3678999999653211 0 1
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhh------HH---HHHhhc-cchhhhhhh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRG------AT---ELRDQQ-AEVDSLKEY 162 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~------~~---~l~~~~-~~i~~is~~ 162 (231)
...+..+|++++|+|+++..+..... .....|++ .+.++.|.. .. .+.... -+++.+|++
T Consensus 81 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (179)
T 2y8e_A 81 PSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIM-LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 159 (179)
T ss_dssp HHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEE-EEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTT
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEE-EEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCC
Confidence 12234679999999998432211111 11223332 233343311 01 111111 267778999
Q ss_pred hHhhHHHHHHHHHHH
Q 038053 163 SKQEISKLMGQMQES 177 (231)
Q Consensus 163 ~~~~i~~l~~~i~~~ 177 (231)
++.|+++++..+.+.
T Consensus 160 ~~~~i~~l~~~l~~~ 174 (179)
T 2y8e_A 160 AGYNVKQLFRRVAAA 174 (179)
T ss_dssp TTBSHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999998887654
No 119
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.28 E-value=1.5e-13 Score=111.07 Aligned_cols=82 Identities=20% Similarity=0.125 Sum_probs=57.7
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-E---EeeCCcEEEE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-T---VLKDGQVVNV 77 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-~---~~~~~~~~~l 77 (231)
++.|++..++++++|++++| .+++|+|+||||||||+++|+|...+.. |.+........ . ........++
T Consensus 14 ~~~y~~~~vl~~vsl~i~~G--e~~~liG~nGsGKSTLlk~l~Gl~~p~~----G~i~~~g~~~~~~~~~~~~~~~i~~v 87 (257)
T 1g6h_A 14 VKYFGEFKALDGVSISVNKG--DVTLIIGPNGSGKSTLINVITGFLKADE----GRVYFENKDITNKEPAELYHYGIVRT 87 (257)
T ss_dssp EEEETTEEEEEEECCEEETT--CEEEEECSTTSSHHHHHHHHTTSSCCSE----EEEEETTEECTTCCHHHHHHHTEEEC
T ss_pred EEEECCEeeEeeeEEEEeCC--CEEEEECCCCCCHHHHHHHHhCCCCCCC----cEEEECCEECCCCCHHHHHhCCEEEE
Confidence 56788888999999999999 9999999999999999999999987433 32222111100 0 0001236778
Q ss_pred EeCCCCcCCCCC
Q 038053 78 IDTPGLFDSSAG 89 (231)
Q Consensus 78 ~Dtpg~~~~~~~ 89 (231)
++.|.+++..++
T Consensus 88 ~q~~~l~~~~tv 99 (257)
T 1g6h_A 88 FQTPQPLKEMTV 99 (257)
T ss_dssp CCCCGGGGGSBH
T ss_pred ccCCccCCCCcH
Confidence 888877654443
No 120
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.28 E-value=7e-13 Score=112.26 Aligned_cols=87 Identities=17% Similarity=0.180 Sum_probs=64.8
Q ss_pred CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-------EEeeCCc
Q 038053 1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-------TVLKDGQ 73 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-------~~~~~~~ 73 (231)
+++.|++..++++++|++++| ..++|+|+||||||||+++|+|...+.. |.+........ .......
T Consensus 9 l~~~y~~~~vl~~vsl~i~~G--e~~~llGpnGsGKSTLLr~iaGl~~p~~----G~I~i~g~~~~~~~~~~~~~~~~r~ 82 (372)
T 1g29_1 9 VWKVFGEVTAVREMSLEVKDG--EFMILLGPSGCGKTTTLRMIAGLEEPSR----GQIYIGDKLVADPEKGIFVPPKDRD 82 (372)
T ss_dssp EEEEETTEEEEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHHTSSCCSE----EEEEETTEEEEEGGGTEECCGGGSS
T ss_pred EEEEECCEEEEeeeEEEEcCC--CEEEEECCCCcHHHHHHHHHHcCCCCCc----cEEEECCEECccccccccCCHhHCC
Confidence 357788888999999999999 9999999999999999999999987433 33332221110 0111345
Q ss_pred EEEEEeCCCCcCCCCCchHH
Q 038053 74 VVNVIDTPGLFDSSAGSEFV 93 (231)
Q Consensus 74 ~~~l~Dtpg~~~~~~~~~~~ 93 (231)
..++++.+.+++..++.+++
T Consensus 83 ig~v~Q~~~l~~~ltv~eni 102 (372)
T 1g29_1 83 IAMVFQSYALYPHMTVYDNI 102 (372)
T ss_dssp EEEECSCCCCCTTSCHHHHH
T ss_pred EEEEeCCCccCCCCCHHHHH
Confidence 78899999999877766654
No 121
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.28 E-value=1.2e-12 Score=102.57 Aligned_cols=144 Identities=17% Similarity=0.190 Sum_probs=83.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHH
Q 038053 23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKR 100 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~ 100 (231)
..+|+|+|.+|||||||+|.|++...........+.+.. ........+ ..+.++||||.........
T Consensus 11 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~--------- 79 (218)
T 4djt_A 11 TYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNH--PVTFLDDQGNVIKFNVWDTAGQEKKAVLKD--------- 79 (218)
T ss_dssp EEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEE--EEEEEBTTSCEEEEEEEEECSGGGTSCCCH---------
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeE--EEEEEeCCCcEEEEEEEecCCchhhchHHH---------
Confidence 379999999999999999999976532111111121211 111111112 4688999999764322111
Q ss_pred HhhhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhhH------HHHHhh---cc-chhhhhh
Q 038053 101 IGLAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRGA------TELRDQ---QA-EVDSLKE 161 (231)
Q Consensus 101 ~~~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~------~~l~~~---~~-~i~~is~ 161 (231)
..+..+|++++|+|++++.+..+.. .....|++ .+.++.|... ..+... .. +++.+||
T Consensus 80 --~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 156 (218)
T 4djt_A 80 --VYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIV-VCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISA 156 (218)
T ss_dssp --HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEE-EEEECTTCC----CCHHHHHHHTTTCCCEEEEEBT
T ss_pred --HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEE-EEEECCCCccccccCHHHHHHHHHHcCCcEEEEec
Confidence 1235689999999998544333321 11223433 3334433110 111111 12 6788999
Q ss_pred hhHhhHHHHHHHHHHHHHH
Q 038053 162 YSKQEISKLMGQMQESYED 180 (231)
Q Consensus 162 ~~~~~i~~l~~~i~~~~~~ 180 (231)
++|.|+++++..+...+.+
T Consensus 157 ~~g~gv~~l~~~l~~~~~~ 175 (218)
T 4djt_A 157 KTAHNFGLPFLHLARIFTG 175 (218)
T ss_dssp TTTBTTTHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999988876543
No 122
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.27 E-value=5.8e-13 Score=112.24 Aligned_cols=88 Identities=17% Similarity=0.104 Sum_probs=64.7
Q ss_pred CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEEeeCCcEEEEEe
Q 038053 1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTVLKDGQVVNVID 79 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~D 79 (231)
+++.|++..++++++|++++| ..++|+|+||||||||+++|+|...+..| .+....... ..........++++
T Consensus 9 l~~~y~~~~vl~~vsl~i~~G--e~~~llGpnGsGKSTLLr~iaGl~~p~~G----~I~i~g~~i~~~~~~~r~ig~v~Q 82 (362)
T 2it1_A 9 IVKKFGNFTALNNINLKIKDG--EFMALLGPSGSGKSTLLYTIAGIYKPTSG----KIYFDEKDVTELPPKDRNVGLVFQ 82 (362)
T ss_dssp EEEESSSSEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHHTSSCCSEE----EEEETTEECTTSCGGGTTEEEECT
T ss_pred EEEEECCEEEEEeeEEEECCC--CEEEEECCCCchHHHHHHHHhcCCCCCce----EEEECCEECCcCCHhHCcEEEEec
Confidence 357888888999999999999 99999999999999999999999874333 222211110 00001345788999
Q ss_pred CCCCcCCCCCchHHH
Q 038053 80 TPGLFDSSAGSEFVG 94 (231)
Q Consensus 80 tpg~~~~~~~~~~~~ 94 (231)
.+.+++..++.+++.
T Consensus 83 ~~~l~~~ltv~eni~ 97 (362)
T 2it1_A 83 NWALYPHMTVYKNIA 97 (362)
T ss_dssp TCCCCTTSCHHHHHH
T ss_pred CcccCCCCCHHHHHH
Confidence 999998777666553
No 123
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.27 E-value=4.8e-13 Score=112.66 Aligned_cols=87 Identities=17% Similarity=0.074 Sum_probs=63.4
Q ss_pred CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEEeeCCcEEEEEe
Q 038053 1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTVLKDGQVVNVID 79 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~D 79 (231)
+++.|++..++++++|++++| ..++|+|+||||||||+++|+|...+..| .+....... ..........+++|
T Consensus 9 l~~~y~~~~vl~~vsl~i~~G--e~~~llGpnGsGKSTLLr~iaGl~~p~~G----~I~i~g~~i~~~~~~~r~ig~v~Q 82 (359)
T 2yyz_A 9 LKKYFGKVKAVDGVSFEVKDG--EFVALLGPSGCGKTTTLLMLAGIYKPTSG----EIYFDDVLVNDIPPKYREVGMVFQ 82 (359)
T ss_dssp EEEEETTEEEEEEEEEEECTT--CEEEEECSTTSSHHHHHHHHHTSSCCSEE----EEEETTEECTTSCGGGTTEEEECS
T ss_pred EEEEECCEEEEeeeEEEEcCC--CEEEEEcCCCchHHHHHHHHHCCCCCCcc----EEEECCEECCCCChhhCcEEEEec
Confidence 357788888999999999999 99999999999999999999999874333 222211110 00001345788999
Q ss_pred CCCCcCCCCCchHH
Q 038053 80 TPGLFDSSAGSEFV 93 (231)
Q Consensus 80 tpg~~~~~~~~~~~ 93 (231)
.+.++++.++.+++
T Consensus 83 ~~~l~~~ltv~eni 96 (359)
T 2yyz_A 83 NYALYPHMTVFENI 96 (359)
T ss_dssp SCCCCTTSCHHHHH
T ss_pred CcccCCCCCHHHHH
Confidence 99998876655544
No 124
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.27 E-value=7.2e-12 Score=105.45 Aligned_cols=95 Identities=13% Similarity=0.063 Sum_probs=50.8
Q ss_pred CCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHHh-cCCCCcHHHHHHHHHhh----
Q 038053 71 DGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEAA-NGGQPYTDEFLAELKRG---- 145 (231)
Q Consensus 71 ~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---- 145 (231)
.+..++++||||+.+. . . .....+|.+++|+|++.+........ ....+.+ .++|+++..
T Consensus 165 ~~~~~iliDT~Gi~~~----~---~-------~l~~~~d~vl~V~d~~~~~~~~~i~~~il~~~~i-vVlNK~Dl~~~~~ 229 (349)
T 2www_A 165 AGYDIILIETVGVGQS----E---F-------AVADMVDMFVLLLPPAGGDELQGIKRGIIEMADL-VAVTKSDGDLIVP 229 (349)
T ss_dssp TTCSEEEEECCCC--C----H---H-------HHHTTCSEEEEEECCC------------CCSCSE-EEECCCSGGGHHH
T ss_pred CCCCEEEEECCCcchh----h---h-------hHHhhCCEEEEEEcCCcchhHHHhHHHHHhcCCE-EEEeeecCCCchh
Confidence 4567889999998742 1 0 11357899999999874322221110 0111221 222333211
Q ss_pred ----HHHHHhh-----------ccchhhhhhhhHhhHHHHHHHHHHHHHH
Q 038053 146 ----ATELRDQ-----------QAEVDSLKEYSKQEISKLMGQMQESYED 180 (231)
Q Consensus 146 ----~~~l~~~-----------~~~i~~is~~~~~~i~~l~~~i~~~~~~ 180 (231)
...+... .++++++|+.+|.|++.++..+.+....
T Consensus 230 ~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 230 ARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp HHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 0122110 2357789999999999999999886643
No 125
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.27 E-value=2.5e-11 Score=91.92 Aligned_cols=140 Identities=16% Similarity=0.084 Sum_probs=80.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHH
Q 038053 23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKR 100 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~ 100 (231)
..+|+++|.+|+|||||+|.+++.... ....+++.......... .+ ..+.++||||.......
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~----------- 70 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQFV---DSYDPTIENTFTKLITV-NGQEYHLQLVDTAGQDEYSIF----------- 70 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCC---SCCCTTCCEEEEEEEEE-TTEEEEEEEEECCCCCTTCCC-----------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCC---CCCCCCccccEEEEEEE-CCEEEEEEEEeCCCchhhhHH-----------
Confidence 379999999999999999999955431 11222222211222222 44 45679999997653211
Q ss_pred HhhhcCCccEEEEEEECCCCCCHHHHH----------hcCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhh
Q 038053 101 IGLAKGGIHAVLVVFSVRSRFSQEEEA----------ANGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLK 160 (231)
Q Consensus 101 ~~~~~~~~~~il~vvd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is 160 (231)
....+..+|++++|+|+++.-+..... .....|++ .+.++.|.. ...+....+ +++.+|
T Consensus 71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 149 (181)
T 3t5g_A 71 PQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIM-LVGNKKDLHMERVISYEEGKALAESWNAAFLESS 149 (181)
T ss_dssp CGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEE-EEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECC
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECccchhcceecHHHHHHHHHHhCCcEEEEe
Confidence 112346789999999998432222211 11123333 333443310 012222222 677899
Q ss_pred hhhHhhHHHHHHHHHHHH
Q 038053 161 EYSKQEISKLMGQMQESY 178 (231)
Q Consensus 161 ~~~~~~i~~l~~~i~~~~ 178 (231)
++++.|+.+++..+....
T Consensus 150 a~~~~~v~~l~~~l~~~~ 167 (181)
T 3t5g_A 150 AKENQTAVDVFRRIILEA 167 (181)
T ss_dssp TTSHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHH
Confidence 999999999988887754
No 126
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.27 E-value=1.8e-13 Score=110.95 Aligned_cols=83 Identities=13% Similarity=0.023 Sum_probs=58.8
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE---EeeCCcEEEEE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT---VLKDGQVVNVI 78 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~l~ 78 (231)
++.|++..++++++|++++| .+++|+|+||||||||+++|+|...+ ..|.+......... ........+++
T Consensus 18 ~~~~~~~~vL~~vsl~i~~G--e~~~liG~nGsGKSTLl~~l~Gl~~p----~~G~I~~~g~~~~~~~~~~~~~~i~~v~ 91 (266)
T 4g1u_C 18 HYHVQQQALINDVSLHIASG--EMVAIIGPNGAGKSTLLRLLTGYLSP----SHGECHLLGQNLNSWQPKALARTRAVMR 91 (266)
T ss_dssp EEEETTEEEEEEEEEEEETT--CEEEEECCTTSCHHHHHHHHTSSSCC----SSCEEEETTEETTTSCHHHHHHHEEEEC
T ss_pred EEEeCCeeEEEeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCC----CCcEEEECCEECCcCCHHHHhheEEEEe
Confidence 56788999999999999999 99999999999999999999999873 34433322211000 00012357788
Q ss_pred eCCCCcCCCCCc
Q 038053 79 DTPGLFDSSAGS 90 (231)
Q Consensus 79 Dtpg~~~~~~~~ 90 (231)
+.+.++...++.
T Consensus 92 q~~~~~~~~tv~ 103 (266)
T 4g1u_C 92 QYSELAFPFSVS 103 (266)
T ss_dssp SCCCCCSCCBHH
T ss_pred cCCccCCCCCHH
Confidence 888776544433
No 127
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.27 E-value=1.4e-12 Score=100.03 Aligned_cols=144 Identities=10% Similarity=0.014 Sum_probs=82.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCC------CCcceeeeeeeE---Ee-eCCcEEEEEeCCCCcCCCCCchHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADS------SGVTKTCEMKTT---VL-KDGQVVNVIDTPGLFDSSAGSEFV 93 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~------~~~t~~~~~~~~---~~-~~~~~~~l~Dtpg~~~~~~~~~~~ 93 (231)
.+|+++|.+|||||||+|.|.|.......+.. ...|........ .. .....+.++||||.....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~------ 88 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN------ 88 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS------
T ss_pred cEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH------
Confidence 78999999999999999999987653221100 111221111110 11 023467899999975422
Q ss_pred HHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH-----------h---cCCCCcHHHHHHHHHhhH----HHHHhhc--
Q 038053 94 GKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA-----------A---NGGQPYTDEFLAELKRGA----TELRDQQ-- 153 (231)
Q Consensus 94 ~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~-----------~---~~~~~~~~~~~~~~~~~~----~~l~~~~-- 153 (231)
......+..+|++++|+|++++....+.. . ....|++ .+.++.|... +++.+..
T Consensus 89 -----~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~pii-lv~NK~Dl~~~~~~~~~~~~~~~ 162 (198)
T 3t1o_A 89 -----ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIV-IQVNKRDLPDALPVEMVRAVVDP 162 (198)
T ss_dssp -----HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEE-EEEECTTSTTCCCHHHHHHHHCT
T ss_pred -----HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEE-EEEEchhcccccCHHHHHHHHHh
Confidence 11122457889999999998432222221 0 0233333 3444444110 2222222
Q ss_pred --c-chhhhhhhhHhhHHHHHHHHHHHHH
Q 038053 154 --A-EVDSLKEYSKQEISKLMGQMQESYE 179 (231)
Q Consensus 154 --~-~i~~is~~~~~~i~~l~~~i~~~~~ 179 (231)
. +++.+||++|.|+++++..+.....
T Consensus 163 ~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~ 191 (198)
T 3t1o_A 163 EGKFPVLEAVATEGKGVFETLKEVSRLVL 191 (198)
T ss_dssp TCCSCEEECBGGGTBTHHHHHHHHHHHHH
T ss_pred cCCceEEEEecCCCcCHHHHHHHHHHHHH
Confidence 2 6677999999999999888876543
No 128
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.27 E-value=5.1e-12 Score=97.96 Aligned_cols=140 Identities=12% Similarity=0.061 Sum_probs=79.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
.+|+|+|.+|+|||||+|.+++...... ..+..+.+........ .+ ..+.++||||.... ....
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~~~ 95 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTGAFSER--QGSTIGVDFTMKTLEI-QGKRVKLQIWDTAGQERF-----------RTIT 95 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC------------CEEEEEEEE-TTEEEEEEEECCTTCGGG-----------HHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhhCCCCCC--CCCCcceEEEEEEEEE-CCEEEEEEEEECCCcHhH-----------HHHH
Confidence 6899999999999999999987754211 1111112222222222 33 47889999996531 1112
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH--------h-cCCCCcHHHHHHHHHhh---------HHHHHhhcc--chhhhhh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------A-NGGQPYTDEFLAELKRG---------ATELRDQQA--EVDSLKE 161 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~---------~~~l~~~~~--~i~~is~ 161 (231)
...+..+|++++|+|+++..+..... . ....|++ .+.++.|.. ...+....+ +++.+|+
T Consensus 96 ~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~pii-lv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA 174 (201)
T 2hup_A 96 QSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQL-LIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSA 174 (201)
T ss_dssp HHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEE-EEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBT
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEE-EEEECCccccccccCHHHHHHHHHHcCCCEEEEEeC
Confidence 23346789999999998432221111 1 1223332 233333311 012222222 5678999
Q ss_pred hhHhhHHHHHHHHHHHH
Q 038053 162 YSKQEISKLMGQMQESY 178 (231)
Q Consensus 162 ~~~~~i~~l~~~i~~~~ 178 (231)
+++.|+++++..+....
T Consensus 175 ~~g~gi~~l~~~l~~~i 191 (201)
T 2hup_A 175 KDSSNVEEAFLRVATEL 191 (201)
T ss_dssp TTTBSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999998877654
No 129
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.27 E-value=5.6e-13 Score=112.00 Aligned_cols=87 Identities=18% Similarity=0.067 Sum_probs=64.1
Q ss_pred CCCCC-CCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEEeeCCcEEEEE
Q 038053 1 MSSGM-GERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTVLKDGQVVNVI 78 (231)
Q Consensus 1 ~~~~~-~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~ 78 (231)
+++.| ++..++++++|++++| ..++|+|+||||||||+++|+|...+..| .+....... ..........+++
T Consensus 20 l~~~y~g~~~vl~~vsl~i~~G--e~~~llGpnGsGKSTLLr~iaGl~~p~~G----~I~i~g~~i~~~~~~~r~ig~v~ 93 (355)
T 1z47_A 20 VEKIYPGGARSVRGVSFQIREG--EMVGLLGPSGSGKTTILRLIAGLERPTKG----DVWIGGKRVTDLPPQKRNVGLVF 93 (355)
T ss_dssp EEECCTTSTTCEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHHTSSCCSEE----EEEETTEECTTCCGGGSSEEEEC
T ss_pred EEEEEcCCCEEEeeeEEEECCC--CEEEEECCCCCcHHHHHHHHhCCCCCCcc----EEEECCEECCcCChhhCcEEEEe
Confidence 36788 8888999999999999 99999999999999999999999874333 222211110 0001134578899
Q ss_pred eCCCCcCCCCCchHH
Q 038053 79 DTPGLFDSSAGSEFV 93 (231)
Q Consensus 79 Dtpg~~~~~~~~~~~ 93 (231)
+.+.+++..++.+++
T Consensus 94 Q~~~l~~~ltv~eni 108 (355)
T 1z47_A 94 QNYALFQHMTVYDNV 108 (355)
T ss_dssp GGGCCCTTSCHHHHH
T ss_pred cCcccCCCCCHHHHH
Confidence 999998877766655
No 130
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.27 E-value=8e-11 Score=103.14 Aligned_cols=141 Identities=11% Similarity=0.187 Sum_probs=85.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccc-----cccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFK-----ASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIV 98 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~-----~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~ 98 (231)
.+|+++|.+|+|||||+|.|++..... ......++|.+........ .+..+.++||||.. .+.
T Consensus 20 ~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~iiDtPGh~-----------~~~ 87 (482)
T 1wb1_A 20 INLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL-ENYRITLVDAPGHA-----------DLI 87 (482)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE-TTEEEEECCCSSHH-----------HHH
T ss_pred CEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEE-CCEEEEEEECCChH-----------HHH
Confidence 799999999999999999999976110 0012345666555544544 67889999999953 233
Q ss_pred HHHhhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhh--------HHHHHhh------c--cchh
Q 038053 99 KRIGLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRG--------ATELRDQ------Q--AEVD 157 (231)
Q Consensus 99 ~~~~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~--------~~~l~~~------~--~~i~ 157 (231)
......+..+|++++|+|+++++..+... .....|. +.++|++|.. .+++.+. + .+++
T Consensus 88 ~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~-IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii 166 (482)
T 1wb1_A 88 RAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPI-IVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSII 166 (482)
T ss_dssp HHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCB-CEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEE
T ss_pred HHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCE-EEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEE
Confidence 33444557899999999998776665543 2223333 2333333310 0122221 1 2678
Q ss_pred hhhhhhHhhHHHHHHHHHHH
Q 038053 158 SLKEYSKQEISKLMGQMQES 177 (231)
Q Consensus 158 ~is~~~~~~i~~l~~~i~~~ 177 (231)
++||++|.|+.+|++.+...
T Consensus 167 ~vSA~~g~gI~~L~~~L~~~ 186 (482)
T 1wb1_A 167 PISAKTGFGVDELKNLIITT 186 (482)
T ss_dssp ECCTTTCTTHHHHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHHHHh
Confidence 89999999999988877664
No 131
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.27 E-value=8e-11 Score=99.23 Aligned_cols=152 Identities=13% Similarity=0.111 Sum_probs=80.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccc----CCCC----------------------ccee----------------
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASA----DSSG----------------------VTKT---------------- 61 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~----~~~~----------------------~t~~---------------- 61 (231)
..|+++|.+|||||||+|+|+|......+. ..++ +|..
T Consensus 32 ~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g~ 111 (353)
T 2x2e_A 32 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGT 111 (353)
T ss_dssp CEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhccc
Confidence 589999999999999999999986421110 0111 1100
Q ss_pred -------eeeeeEEeeCCcEEEEEeCCCCcCCCCC--chHHHHHHHHHHhhhc-CCccEEEEEEECCCCCCHHHHH----
Q 038053 62 -------CEMKTTVLKDGQVVNVIDTPGLFDSSAG--SEFVGKEIVKRIGLAK-GGIHAVLVVFSVRSRFSQEEEA---- 127 (231)
Q Consensus 62 -------~~~~~~~~~~~~~~~l~Dtpg~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~il~vvd~~~~~~~~~~~---- 127 (231)
.............+.++||||+...... .......+...+...+ ...++++++++++..+...+..
T Consensus 112 ~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~ 191 (353)
T 2x2e_A 112 NKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAK 191 (353)
T ss_dssp TTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHH
T ss_pred CCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHH
Confidence 0000001112457889999999753211 1222222222222222 3456777788877555544321
Q ss_pred -h-cCCCCcHHHHHHHHHhhH------HHHHhh-------ccchhhhhhhhHhhHHHHHHHHHH
Q 038053 128 -A-NGGQPYTDEFLAELKRGA------TELRDQ-------QAEVDSLKEYSKQEISKLMGQMQE 176 (231)
Q Consensus 128 -~-~~~~~~~~~~~~~~~~~~------~~l~~~-------~~~i~~is~~~~~~i~~l~~~i~~ 176 (231)
. ....+.+ .++|+.|... ..+... ..+++.+|+.++.|+..++..+..
T Consensus 192 ~~~~~~~~~i-~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 192 EVDPQGQRTI-GVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHCTTCTTEE-EEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HhCcCCCceE-EEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 1 1223332 3444444210 111111 125677899999998888887765
No 132
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.26 E-value=1.8e-11 Score=93.27 Aligned_cols=147 Identities=18% Similarity=0.167 Sum_probs=83.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHH----HHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKE----IVK 99 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~----~~~ 99 (231)
.+|+++|.+|||||||+|.+++.... . ...+++|...... .. . .+.++||||+............. ...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~-~-~~~~~~t~~~~~~--~~-~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 74 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVR-R-GKRPGVTRKIIEI--EW-K--NHKIIDMPGFGFMMGLPKEVQERIKDEIVH 74 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCS-S-SSSTTCTTSCEEE--EE-T--TEEEEECCCBSCCTTSCHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCc-c-CCCCCccceeEEE--ec-C--CEEEEECCCccccccCCHHHHHHHHHHHHH
Confidence 47999999999999999999998642 2 1334455433222 12 2 57799999976533322211112 222
Q ss_pred HHhhhcCCccEEEEEEECCCCCCHH------------HHH-----hcCCCCcHHHHHHHHHhh------HHHHHhhcc--
Q 038053 100 RIGLAKGGIHAVLVVFSVRSRFSQE------------EEA-----ANGGQPYTDEFLAELKRG------ATELRDQQA-- 154 (231)
Q Consensus 100 ~~~~~~~~~~~il~vvd~~~~~~~~------------~~~-----~~~~~~~~~~~~~~~~~~------~~~l~~~~~-- 154 (231)
++......++.++.++|..+ +... +.. .....|++ .+.++.|.. ...+...++
T Consensus 75 ~~~~~~~~~~~v~~v~d~~s-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~ 152 (190)
T 2cxx_A 75 FIEDNAKNIDVAVLVVDGKA-APEIIKRWEKRGEIPIDVEFYQFLRELDIPTI-VAVNKLDKIKNVQEVINFLAEKFEVP 152 (190)
T ss_dssp HHHHHGGGCCEEEEEEETTH-HHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEE-EEEECGGGCSCHHHHHHHHHHHHTCC
T ss_pred HHHhhhccCCEEEEEEcchh-hhhHHHhhhccCccHHHHHHHHHHHhcCCceE-EEeehHhccCcHHHHHHHHHHHhhhh
Confidence 22222456788889998762 1110 000 12234433 233333311 123332222
Q ss_pred ------chhhhhhhhHhhHHHHHHHHHHHHH
Q 038053 155 ------EVDSLKEYSKQEISKLMGQMQESYE 179 (231)
Q Consensus 155 ------~i~~is~~~~~~i~~l~~~i~~~~~ 179 (231)
+++.+|+++|.|+++++..+.....
T Consensus 153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 183 (190)
T 2cxx_A 153 LSEIDKVFIPISAKFGDNIERLKNRIFEVIR 183 (190)
T ss_dssp GGGHHHHEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred hhccCCcEEEEecCCCCCHHHHHHHHHHhcc
Confidence 3577899999999999988876543
No 133
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.26 E-value=1.9e-11 Score=104.71 Aligned_cols=81 Identities=20% Similarity=0.230 Sum_probs=50.3
Q ss_pred CCCCCCcccCCCcccCCCCCCceE--EEEEcCCCCCHHHHHHHHhCCCcccccc--CCCCcceeeeeeeEEeeCC--cEE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRT--VVLLGRTGNGKSATGNSILGRKAFKASA--DSSGVTKTCEMKTTVLKDG--QVV 75 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~--i~lvG~~g~GKSTLin~l~g~~~~~~~~--~~~~~t~~~~~~~~~~~~~--~~~ 75 (231)
+++|++.+ ++++++++++| .. ++|+|+||||||||+|+|+|........ ..++.+.. .........+ ..+
T Consensus 22 ~~~y~~~~-L~~vsl~i~~G--ei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~-~i~~v~Q~~~l~~~l 97 (427)
T 2qag_B 22 HVGFDSLP-DQLVNKSVSQG--FCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQ-SNTYDLQESNVRLKL 97 (427)
T ss_dssp CC-CC--C-HHHHHHSCC-C--CEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEE-EEEEEEEC--CEEEE
T ss_pred EEEECCee-cCCCceEecCC--CeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEe-eEEEEeecCcccccc
Confidence 46788777 99999999999 66 9999999999999999999985321101 11222222 2222222112 257
Q ss_pred EEEeCCCCcCC
Q 038053 76 NVIDTPGLFDS 86 (231)
Q Consensus 76 ~l~Dtpg~~~~ 86 (231)
.++|+||+...
T Consensus 98 tv~D~~~~g~~ 108 (427)
T 2qag_B 98 TIVSTVGFGDQ 108 (427)
T ss_dssp EEEEEECCCC-
T ss_pred chhhhhhhhhc
Confidence 89999998753
No 134
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.26 E-value=1.7e-12 Score=104.00 Aligned_cols=77 Identities=14% Similarity=0.070 Sum_probs=55.7
Q ss_pred CCCC-CCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee----eEEeeCCcEEE
Q 038053 2 SSGM-GERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK----TTVLKDGQVVN 76 (231)
Q Consensus 2 ~~~~-~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~ 76 (231)
++.| ++..++++++|++++| .+++|+|+||||||||+++|+|...+ ..|.+....... .... .....+
T Consensus 8 ~~~y~~~~~vl~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p----~~G~i~~~g~~~~~~~~~~~-~~~i~~ 80 (243)
T 1mv5_A 8 DFAYDDSEQILRDISFEAQPN--SIIAFAGPSGGGKSTIFSLLERFYQP----TAGEITIDGQPIDNISLENW-RSQIGF 80 (243)
T ss_dssp EECSSSSSCSEEEEEEEECTT--EEEEEECCTTSSHHHHHHHHTTSSCC----SBSCEEETTEESTTTSCSCC-TTTCCE
T ss_pred EEEeCCCCceEEEeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCC----CCcEEEECCEEhhhCCHHHH-HhhEEE
Confidence 5678 6778999999999999 99999999999999999999999874 333333222110 0011 334667
Q ss_pred EEeCCCCcC
Q 038053 77 VIDTPGLFD 85 (231)
Q Consensus 77 l~Dtpg~~~ 85 (231)
+++.|.+++
T Consensus 81 v~q~~~l~~ 89 (243)
T 1mv5_A 81 VSQDSAIMA 89 (243)
T ss_dssp ECCSSCCCC
T ss_pred EcCCCcccc
Confidence 788776654
No 135
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.26 E-value=6.3e-13 Score=111.85 Aligned_cols=86 Identities=15% Similarity=0.101 Sum_probs=63.1
Q ss_pred CCCCCCcc--cCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee------EEeeCCc
Q 038053 2 SSGMGERV--IDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT------TVLKDGQ 73 (231)
Q Consensus 2 ~~~~~~~~--~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~------~~~~~~~ 73 (231)
++.|++.. ++++++|++++| ..++|+|+||||||||+++|+|...+.. |.+........ .......
T Consensus 10 ~~~y~~~~~~vl~~vsl~i~~G--e~~~llGpnGsGKSTLLr~iaGl~~p~~----G~I~i~g~~i~~~~~~~~~~~~r~ 83 (353)
T 1oxx_K 10 SKVFKKGKVVALDNVNINIENG--ERFGILGPSGAGKTTFMRIIAGLDVPST----GELYFDDRLVASNGKLIVPPEDRK 83 (353)
T ss_dssp EEEEGGGTEEEEEEEEEEECTT--CEEEEECSCHHHHHHHHHHHHTSSCCSE----EEEEETTEEEEETTEESSCGGGSC
T ss_pred EEEECCEeeeeEeceEEEECCC--CEEEEECCCCCcHHHHHHHHhCCCCCCc----eEEEECCEECcccccccCChhhCC
Confidence 56788878 999999999999 9999999999999999999999987433 33332221110 0011345
Q ss_pred EEEEEeCCCCcCCCCCchHH
Q 038053 74 VVNVIDTPGLFDSSAGSEFV 93 (231)
Q Consensus 74 ~~~l~Dtpg~~~~~~~~~~~ 93 (231)
..++++.+.+++..++.+++
T Consensus 84 ig~v~Q~~~l~~~ltv~eni 103 (353)
T 1oxx_K 84 IGMVFQTWALYPNLTAFENI 103 (353)
T ss_dssp EEEEETTSCCCTTSCHHHHH
T ss_pred EEEEeCCCccCCCCCHHHHH
Confidence 78899999998876655543
No 136
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.26 E-value=1.6e-11 Score=94.81 Aligned_cols=140 Identities=18% Similarity=0.110 Sum_probs=76.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHH
Q 038053 23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKR 100 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~ 100 (231)
..+|+++|.+|+|||||+|.|++...........+.+.. ...... .+ ..+.++||||.... . ....
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~-~~~~~~l~i~Dt~G~~~~----~---~~~~-- 95 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQ--MKTLIV-DGERTVLQLWDTAGQERF----R---SIAK-- 95 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHCCCC----------CE--EEEEEE-TTEEEEEEEEECTTCTTC----H---HHHH--
T ss_pred CeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeE--EEEEEE-CCEEEEEEEEECCCCcch----h---hhHH--
Confidence 389999999999999999999987532110111122211 111222 22 45789999996542 1 1111
Q ss_pred HhhhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhh---------------HHHHHhhcc-c
Q 038053 101 IGLAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRG---------------ATELRDQQA-E 155 (231)
Q Consensus 101 ~~~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~---------------~~~l~~~~~-~ 155 (231)
..+..+|++++|+|+++..+..+.. .....|++ .+.++.|.. ...+....+ +
T Consensus 96 --~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-lv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~ 172 (199)
T 2p5s_A 96 --SYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIM-LVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGAL 172 (199)
T ss_dssp --HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEE-EEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCE
T ss_pred --HHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEE-EEEECcccccccccccccccCHHHHHHHHHHcCCe
Confidence 2234579999999998543222211 11233433 233333311 011111112 5
Q ss_pred hhhhhhhhHhhHHHHHHHHHHH
Q 038053 156 VDSLKEYSKQEISKLMGQMQES 177 (231)
Q Consensus 156 i~~is~~~~~~i~~l~~~i~~~ 177 (231)
++.+|+++|.|+++++..+...
T Consensus 173 ~~~~SA~~g~gv~el~~~l~~~ 194 (199)
T 2p5s_A 173 FCETSAKDGSNIVEAVLHLARE 194 (199)
T ss_dssp EEECCTTTCTTHHHHHHHHHHH
T ss_pred EEEeeCCCCCCHHHHHHHHHHH
Confidence 6778999999999988887664
No 137
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.26 E-value=3.8e-12 Score=106.34 Aligned_cols=137 Identities=12% Similarity=0.060 Sum_probs=83.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
.+|+|+|.+|+|||||+|.|++...... . .|.......... .+..+.++||||...... ....
T Consensus 166 ~kI~ivG~~~vGKSsLl~~l~~~~~~~~---~--pT~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~-----------~~~~ 228 (329)
T 3o47_A 166 MRILMVGLDAAGKTTILYKLKLGEIVTT---I--PTIGFNVETVEY-KNISFTVWDVGGQDKIRP-----------LWRH 228 (329)
T ss_dssp EEEEEEESTTSSHHHHHHHTCSSCCEEE---E--EETTEEEEEEEE-TTEEEEEEECC-----CC-----------SHHH
T ss_pred ceEEEECCCCccHHHHHHHHhCCCCCCc---c--cccceEEEEEec-CcEEEEEEECCCCHhHHH-----------HHHH
Confidence 5899999999999999999998764211 1 133333344444 677899999999543221 1122
Q ss_pred hcCCccEEEEEEECCCCCCHHHHH------hc----CCCCcHHHHHHHHHhh----HHHHHhhcc---------chhhhh
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEEEA------AN----GGQPYTDEFLAELKRG----ATELRDQQA---------EVDSLK 160 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~----~~~l~~~~~---------~i~~is 160 (231)
.+..+|++++|+|+++.-+..... .. ...|++ .+.++.|.. ...+...+. +++.+|
T Consensus 229 ~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~pii-lV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vS 307 (329)
T 3o47_A 229 YFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLL-VFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATC 307 (329)
T ss_dssp HHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEE-EEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECB
T ss_pred HhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEE-EEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEE
Confidence 346789999999998544433322 11 133333 344444421 112222221 467899
Q ss_pred hhhHhhHHHHHHHHHHHH
Q 038053 161 EYSKQEISKLMGQMQESY 178 (231)
Q Consensus 161 ~~~~~~i~~l~~~i~~~~ 178 (231)
+++|.|+++++..+...+
T Consensus 308 Ak~g~gi~el~~~l~~~l 325 (329)
T 3o47_A 308 ATSGDGLYEGLDWLSNQL 325 (329)
T ss_dssp TTTTBTHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHH
Confidence 999999999999887654
No 138
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.26 E-value=1.4e-12 Score=104.14 Aligned_cols=66 Identities=17% Similarity=0.167 Sum_probs=51.7
Q ss_pred CCCCC--CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEe
Q 038053 2 SSGMG--ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVID 79 (231)
Q Consensus 2 ~~~~~--~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~D 79 (231)
++.|+ +..++++++|++++| .+++|+|+||||||||+++|+|...+.. |.+. + .+...++++
T Consensus 10 ~~~y~~~~~~vl~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~----G~I~---------~-~g~i~~v~Q 73 (237)
T 2cbz_A 10 TFTWARSDPPTLNGITFSIPEG--ALVAVVGQVGCGKSSLLSALLAEMDKVE----GHVA---------I-KGSVAYVPQ 73 (237)
T ss_dssp EEESCTTSCCSEEEEEEEECTT--CEEEEECSTTSSHHHHHHHHTTCSEEEE----EEEE---------E-CSCEEEECS
T ss_pred EEEeCCCCCceeeeeEEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCC----ceEE---------E-CCEEEEEcC
Confidence 56676 578999999999999 9999999999999999999999987432 2222 1 345667777
Q ss_pred CCCC
Q 038053 80 TPGL 83 (231)
Q Consensus 80 tpg~ 83 (231)
.|.+
T Consensus 74 ~~~~ 77 (237)
T 2cbz_A 74 QAWI 77 (237)
T ss_dssp SCCC
T ss_pred CCcC
Confidence 7654
No 139
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.25 E-value=1.4e-11 Score=94.84 Aligned_cols=139 Identities=16% Similarity=0.143 Sum_probs=79.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeC--CcEEEEEeCCCCcCCCCCchHHHHHHHHH
Q 038053 23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDSSAGSEFVGKEIVKR 100 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~ 100 (231)
..+|+++|.+|+|||||+|.+++...... ..+..... ....... . ...+.++||||... ... ...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~--~~~t~~~~-~~~~~~~-~~~~~~~~l~Dt~G~~~-----~~~---~~~- 94 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTKRFIWE--YDPTLEST-YRHQATI-DDEVVSMEILDTAGQED-----TIQ---REG- 94 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCCSC--CCTTCCEE-EEEEEEE-TTEEEEEEEEECCCCCC-----CHH---HHH-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCcc--cCCCCCce-EEEEEEE-CCEEEEEEEEECCCCCc-----ccc---hhh-
Confidence 37999999999999999999998754211 11111111 1111222 3 34578999999775 111 111
Q ss_pred HhhhcCCccEEEEEEECCCCCCHHHHH----------hcCCCCcHHHHHHHHHhhH---------HHHHhhcc-chhhhh
Q 038053 101 IGLAKGGIHAVLVVFSVRSRFSQEEEA----------ANGGQPYTDEFLAELKRGA---------TELRDQQA-EVDSLK 160 (231)
Q Consensus 101 ~~~~~~~~~~il~vvd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~---------~~l~~~~~-~i~~is 160 (231)
.+..+|++++|+|+++.-+..+.. .....|++ .+.++.|... ..+....+ +++.+|
T Consensus 95 ---~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 170 (196)
T 2atv_A 95 ---HMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLI-LVGNKADLDHSRQVSTEEGEKLATELACAFYECS 170 (196)
T ss_dssp ---HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEE-EEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECC
T ss_pred ---hhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEE-EEEECcccccccccCHHHHHHHHHHhCCeEEEEC
Confidence 223569999999998532211111 11233443 3334433110 12222222 677799
Q ss_pred hhhHh-hHHHHHHHHHHHH
Q 038053 161 EYSKQ-EISKLMGQMQESY 178 (231)
Q Consensus 161 ~~~~~-~i~~l~~~i~~~~ 178 (231)
++++. |+.+++..+....
T Consensus 171 a~~g~~gi~~l~~~l~~~i 189 (196)
T 2atv_A 171 ACTGEGNITEIFYELCREV 189 (196)
T ss_dssp TTTCTTCHHHHHHHHHHHH
T ss_pred CCcCCcCHHHHHHHHHHHH
Confidence 99999 9999988877654
No 140
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.25 E-value=3.7e-11 Score=91.18 Aligned_cols=138 Identities=14% Similarity=0.086 Sum_probs=79.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
.+|+++|.+|+|||||+|.+++..... ...+++.......... .+ ..+.++||||..... ...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~~~~---~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~-----------~~~ 70 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNAFPG---EYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDYD-----------RLR 70 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCCS---SCCCCSCCEEEEEEEE-TTEEEEEEEECCCCSGGGT-----------TTG
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCC---CcCCcccceeEEEEEE-CCEEEEEEEEECCCCHhHH-----------HHH
Confidence 689999999999999999999764311 1111221111111222 33 345689999975421 112
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhhH---------------------HHHHh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRGA---------------------TELRD 151 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~---------------------~~l~~ 151 (231)
...+..+|++++|+|+++..+..+.. .....|++ .+.++.|... ..+..
T Consensus 71 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 149 (186)
T 1mh1_A 71 PLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPII-LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK 149 (186)
T ss_dssp GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEE-EEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHH
T ss_pred HHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEE-EEeEcccccccchhhhhhcccccccCCHHHHHHHHH
Confidence 23457889999999998543222211 11234443 2223322100 11211
Q ss_pred hcc--chhhhhhhhHhhHHHHHHHHHHH
Q 038053 152 QQA--EVDSLKEYSKQEISKLMGQMQES 177 (231)
Q Consensus 152 ~~~--~i~~is~~~~~~i~~l~~~i~~~ 177 (231)
..+ +++.+||++|.|+++++..+.+.
T Consensus 150 ~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 177 (186)
T 1mh1_A 150 EIGAVKYLECSALTQRGLKTVFDEAIRA 177 (186)
T ss_dssp HTTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred hcCCcEEEEecCCCccCHHHHHHHHHHH
Confidence 222 57779999999999998887664
No 141
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.25 E-value=3.1e-12 Score=110.05 Aligned_cols=151 Identities=18% Similarity=0.174 Sum_probs=89.9
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHH
Q 038053 20 SNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVK 99 (231)
Q Consensus 20 ~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~ 99 (231)
+....+|+|+|.+|+|||||+|.|++...... ....++|.+.............+.++||||+.+...........
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~-~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~--- 106 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIV-SDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEK--- 106 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHH---
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCCcc-CCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHH---
Confidence 33457999999999999999999999875333 24566676666655555233488999999997644332221112
Q ss_pred HHhhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhhH-------HHHHhhcc-chhhhhhhhHhh
Q 038053 100 RIGLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRGA-------TELRDQQA-EVDSLKEYSKQE 166 (231)
Q Consensus 100 ~~~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-------~~l~~~~~-~i~~is~~~~~~ 166 (231)
....+..+|++++|+|++ ....+.. .....|++ .++|+.|... ..+.+..+ +++.+|+++|.|
T Consensus 107 -~~~~l~~aD~vllVvD~~--~~~~~~~~l~~l~~~~~piI-vV~NK~Dl~~~~~~~~~~~l~~~~g~~v~~vSAktg~g 182 (423)
T 3qq5_A 107 -ARRVFYRADCGILVTDSA--PTPYEDDVVNLFKEMEIPFV-VVVNKIDVLGEKAEELKGLYESRYEAKVLLVSALQKKG 182 (423)
T ss_dssp -HHHHHTSCSEEEEECSSS--CCHHHHHHHHHHHHTTCCEE-EECCCCTTTTCCCTHHHHHSSCCTTCCCCCCSSCCTTS
T ss_pred -HHHHHhcCCEEEEEEeCC--ChHHHHHHHHHHHhcCCCEE-EEEeCcCCCCccHHHHHHHHHHHcCCCEEEEECCCCCC
Confidence 223446789999999983 3333332 22234443 4445544211 12222222 678899999999
Q ss_pred HHHHHHHHHHHH
Q 038053 167 ISKLMGQMQESY 178 (231)
Q Consensus 167 i~~l~~~i~~~~ 178 (231)
+++++..+.+..
T Consensus 183 I~eL~~~L~~~l 194 (423)
T 3qq5_A 183 FDDIGKTISEIL 194 (423)
T ss_dssp TTTHHHHHHHHS
T ss_pred HHHHHHHHHHhh
Confidence 999999988765
No 142
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.25 E-value=1.8e-11 Score=90.88 Aligned_cols=139 Identities=17% Similarity=0.191 Sum_probs=79.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
.+|+++|.+|+|||||+|.+++..... ...+++.......... .+ ..+.++||||..... .. ..
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~----~~----~~-- 69 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVD---ECDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYS----AM----RD-- 69 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCS---CCCTTCCEEEEEEEEE-TTEEEEEEEEECCCCSSCC----HH----HH--
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCcc---ccCCccceEEEEEEEE-CCEEEEEEEEECCCchhhh----HH----HH--
Confidence 689999999999999999999875421 1122222111112222 33 346789999976422 11 11
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH--------h--cCCCCcHHHHHHHHHhh--------HHHHHhhcc-chhhhhhh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------A--NGGQPYTDEFLAELKRG--------ATELRDQQA-EVDSLKEY 162 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~--~~~~~~~~~~~~~~~~~--------~~~l~~~~~-~i~~is~~ 162 (231)
..+..+|.+++++|+++..+..+.. . ....|++ .+.++.|.. ...+....+ +++.+|+.
T Consensus 70 -~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~i-iv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 147 (166)
T 2ce2_X 70 -QYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV-LVGNKSDLAARTVESRQAQDLARSYGIPYIETSAK 147 (166)
T ss_dssp -HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEE-EEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECTT
T ss_pred -HhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE-EEEEchhhhhcccCHHHHHHHHHHcCCeEEEecCC
Confidence 1223568999999998433222211 1 1133433 333443310 012222222 67789999
Q ss_pred hHhhHHHHHHHHHHHH
Q 038053 163 SKQEISKLMGQMQESY 178 (231)
Q Consensus 163 ~~~~i~~l~~~i~~~~ 178 (231)
++.|+.+++..+....
T Consensus 148 ~~~gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 148 TRQGVEDAFYTLVREI 163 (166)
T ss_dssp TCTTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999988877643
No 143
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.24 E-value=1.6e-11 Score=96.05 Aligned_cols=140 Identities=16% Similarity=0.075 Sum_probs=72.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHH
Q 038053 23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKR 100 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~ 100 (231)
..+|+++|.+|+|||||+|.+++..... ...+++.......... .+ ..+.++||||..... ..
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~~~~~---~~~~t~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~-----------~~ 98 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADGAFPE---SYTPTVFERYMVNLQV-KGKPVHLHIWDTAGQDDYD-----------RL 98 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC----------CCCCCEEEEEEEEE-TTEEEEEEEEEC--------------------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCCC---CCCCccceeEEEEEEE-CCEEEEEEEEECCCchhhh-----------HH
Confidence 3799999999999999999999875421 1111221111112222 33 367899999965321 11
Q ss_pred HhhhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhhH---------------------HHHH
Q 038053 101 IGLAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRGA---------------------TELR 150 (231)
Q Consensus 101 ~~~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~---------------------~~l~ 150 (231)
....+..+|++++|+|+++..+..... .....|++ .+.++.|... ..+.
T Consensus 99 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 177 (214)
T 2j1l_A 99 RPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPII-VVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMA 177 (214)
T ss_dssp ------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEE-EEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEE-EEEEChhhhccchhhhhhcccccCcccHHHHHHHH
Confidence 122346889999999998532222211 11233433 2223322100 1222
Q ss_pred hhcc--chhhhhhhhHhhHHHHHHHHHHHH
Q 038053 151 DQQA--EVDSLKEYSKQEISKLMGQMQESY 178 (231)
Q Consensus 151 ~~~~--~i~~is~~~~~~i~~l~~~i~~~~ 178 (231)
...+ +++.+|+++|.|+++++..+....
T Consensus 178 ~~~~~~~~~~~SA~~g~gi~el~~~l~~~~ 207 (214)
T 2j1l_A 178 RSVGAVAYLECSARLHDNVHAVFQEAAEVA 207 (214)
T ss_dssp HHTTCSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HhcCCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 2222 567899999999999998887654
No 144
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.24 E-value=7.3e-13 Score=112.05 Aligned_cols=86 Identities=19% Similarity=0.139 Sum_probs=57.0
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEEeeCCcEEEEEeC
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTVLKDGQVVNVIDT 80 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~Dt 80 (231)
++.|++..++++++|++++| ..++|+|+||||||||+++|+|...+..| .+....... ..........+++|.
T Consensus 18 ~~~y~~~~vl~~vsl~i~~G--e~~~llGpnGsGKSTLLr~iaGl~~p~~G----~I~i~g~~i~~~~~~~r~ig~v~Q~ 91 (372)
T 1v43_A 18 TKRFGNFTAVNKLNLTIKDG--EFLVLLGPSGCGKTTTLRMIAGLEEPTEG----RIYFGDRDVTYLPPKDRNISMVFQS 91 (372)
T ss_dssp EEEETTEEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHHTSSCCSEE----EEEETTEECTTSCGGGGTEEEEEC-
T ss_pred EEEECCEEEEeeeEEEECCC--CEEEEECCCCChHHHHHHHHHcCCCCCce----EEEECCEECCCCChhhCcEEEEecC
Confidence 56788888999999999999 99999999999999999999999874333 222211110 000002357789999
Q ss_pred CCCcCCCCCchHH
Q 038053 81 PGLFDSSAGSEFV 93 (231)
Q Consensus 81 pg~~~~~~~~~~~ 93 (231)
+.++++.++.+++
T Consensus 92 ~~l~~~ltv~eni 104 (372)
T 1v43_A 92 YAVWPHMTVYENI 104 (372)
T ss_dssp -----CCCHHHHH
T ss_pred cccCCCCCHHHHH
Confidence 8888876655443
No 145
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.24 E-value=6.8e-11 Score=97.80 Aligned_cols=92 Identities=21% Similarity=0.213 Sum_probs=62.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
.+|+|+|.+|||||||+|.+++...... ...++.|............+..+.++||||.... ....+......
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~~~~~-~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~------~~~~~~~~~~~ 76 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNYSAFD-TRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF------MENYFTKQKDH 76 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCCCTGG-GGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH------HHHHHTTTHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcc-ccCcCCccceEEEEEEeCCceEEEEEECCCcHHH------hhhhhhhHHHH
Confidence 7899999999999999999988743322 1356667666655554435678899999996531 11111112223
Q ss_pred hcCCccEEEEEEECCCCCC
Q 038053 104 AKGGIHAVLVVFSVRSRFS 122 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~ 122 (231)
.+..+|++++|+|+++..+
T Consensus 77 ~~~~ad~vi~V~D~t~~~s 95 (307)
T 3r7w_A 77 IFQMVQVLIHVFDVESTEV 95 (307)
T ss_dssp HHTTCSEEEEEEETTCSCH
T ss_pred HhccCCEEEEEEECCChhh
Confidence 3468899999999986544
No 146
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.24 E-value=5.8e-11 Score=91.13 Aligned_cols=139 Identities=12% Similarity=0.080 Sum_probs=81.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCc--EEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
.+|+++|.+|+|||||+|.+++.... .....|............+. .+.++||||..... ...
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~~~ 88 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGEIP----TAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYD-----------RLR 88 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC----SSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGT-----------TTG
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCC----CccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHH-----------HHh
Confidence 79999999999999999999987642 11112222222111111333 45899999954321 112
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHH-H--------hcCCCCcHHHHHHHHHhh-----------HHHHHhhcc-c-hhhh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEE-A--------ANGGQPYTDEFLAELKRG-----------ATELRDQQA-E-VDSL 159 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~-~--------~~~~~~~~~~~~~~~~~~-----------~~~l~~~~~-~-i~~i 159 (231)
...+..+|++++|+|+++..+..+. . .....|++ .+.++.|.. ...+....+ + ++.+
T Consensus 89 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (194)
T 3reg_A 89 PLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV-LVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEA 167 (194)
T ss_dssp GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEE-EEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEEC
T ss_pred HhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE-EEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEe
Confidence 3345788999999999854333332 1 11223333 233443310 012222222 3 7789
Q ss_pred hhhhHhhHHHHHHHHHHHH
Q 038053 160 KEYSKQEISKLMGQMQESY 178 (231)
Q Consensus 160 s~~~~~~i~~l~~~i~~~~ 178 (231)
|+++|.|+++++..+.+..
T Consensus 168 Sa~~~~gi~~l~~~l~~~i 186 (194)
T 3reg_A 168 SSVAKIGLNEVFEKSVDCI 186 (194)
T ss_dssp BTTTTBSHHHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHHHH
Confidence 9999999999988877643
No 147
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.23 E-value=1.1e-10 Score=89.94 Aligned_cols=139 Identities=15% Similarity=0.060 Sum_probs=79.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCc--EEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
.+|+++|.+|+|||||+|.+++.... . ...+++.......... .+. .+.++||||....... .
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~~~~-~--~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~-----------~ 85 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTNGYP-T--EYIPTAFDNFSAVVSV-DGRPVRLQLCDTAGQDEFDKL-----------R 85 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC-----------CCSSEEEEEEEEE-TTEEEEEEEEECCCSTTCSSS-----------G
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-C--CCCCcccceeEEEEEE-CCEEEEEEEEECCCCHHHHHH-----------h
Confidence 89999999999999999999987631 1 1222222222222222 443 5669999998653321 1
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhh---------------------HHHHHh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRG---------------------ATELRD 151 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~---------------------~~~l~~ 151 (231)
...+..+|++++|+|+++..+..+.. .....|++ .+.++.|.. ...+..
T Consensus 86 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 164 (201)
T 2q3h_A 86 PLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPII-LVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAE 164 (201)
T ss_dssp GGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEE-EEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHH
T ss_pred HhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE-EEEECHhhhhchhhhhhhcccccccCCHHHHHHHHH
Confidence 23457789999999998543322211 11233333 222332210 012222
Q ss_pred hcc--chhhhhhhhHhhHHHHHHHHHHHH
Q 038053 152 QQA--EVDSLKEYSKQEISKLMGQMQESY 178 (231)
Q Consensus 152 ~~~--~i~~is~~~~~~i~~l~~~i~~~~ 178 (231)
..+ +++.+|++++.|+++++..+...+
T Consensus 165 ~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 193 (201)
T 2q3h_A 165 EIKAASYIECSALTQKNLKEVFDAAIVAG 193 (201)
T ss_dssp HHTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hcCCcEEEEEecCCCCCHHHHHHHHHHHH
Confidence 222 567789999999999998887654
No 148
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.23 E-value=1e-12 Score=110.56 Aligned_cols=86 Identities=14% Similarity=0.021 Sum_probs=61.8
Q ss_pred CCCCCC----cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE------EeeC
Q 038053 2 SSGMGE----RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT------VLKD 71 (231)
Q Consensus 2 ~~~~~~----~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~------~~~~ 71 (231)
++.|+. ..+|++++|++++| .+++|+|+||||||||+++|+|...+. .|.+......... ....
T Consensus 31 s~~y~~~~~~~~aL~~vsl~i~~G--ei~~IiGpnGaGKSTLlr~i~GL~~p~----~G~I~i~G~~i~~~~~~~~~~~r 104 (366)
T 3tui_C 31 TKVFHQGTRTIQALNNVSLHVPAG--QIYGVIGASGAGKSTLIRCVNLLERPT----EGSVLVDGQELTTLSESELTKAR 104 (366)
T ss_dssp EEEEECSSSEEEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHHTSSCCS----EEEEEETTEECSSCCHHHHHHHH
T ss_pred EEEeCCCCCCeEEEEeeEEEEcCC--CEEEEEcCCCchHHHHHHHHhcCCCCC----ceEEEECCEECCcCCHHHHHHHh
Confidence 455643 46899999999999 999999999999999999999998743 3333322211000 0002
Q ss_pred CcEEEEEeCCCCcCCCCCchHH
Q 038053 72 GQVVNVIDTPGLFDSSAGSEFV 93 (231)
Q Consensus 72 ~~~~~l~Dtpg~~~~~~~~~~~ 93 (231)
....+++|.|.+++..++.+++
T Consensus 105 ~~Ig~v~Q~~~l~~~~TV~env 126 (366)
T 3tui_C 105 RQIGMIFQHFNLLSSRTVFGNV 126 (366)
T ss_dssp TTEEEECSSCCCCTTSCHHHHH
T ss_pred CcEEEEeCCCccCCCCCHHHHH
Confidence 4578999999998877766654
No 149
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.23 E-value=1.7e-11 Score=94.91 Aligned_cols=143 Identities=13% Similarity=0.099 Sum_probs=83.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEee-CCcEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
..+|+++|.+|+|||||+|.|++...... ..+..+.+......... ....+.++||||....... .
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-----------~ 74 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQ--YKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSL-----------G 74 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSS--CCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCS-----------C
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCC--CCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHh-----------H
Confidence 37999999999999999999998764211 22233333222222221 1246889999996542211 1
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH---------hc----CCCCcHHHHHHHHHhh--------HHHHHh-hc-cchhh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA---------AN----GGQPYTDEFLAELKRG--------ATELRD-QQ-AEVDS 158 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~---------~~----~~~~~~~~~~~~~~~~--------~~~l~~-~~-~~i~~ 158 (231)
...+..+|++++|+|+++..+..... .. ...|++ .+.++.|.. ...+.. .. -+++.
T Consensus 75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 153 (207)
T 1vg8_A 75 VAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV-VLGNKIDLENRQVATKRAQAWCYSKNNIPYFE 153 (207)
T ss_dssp CGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEE-EEEECTTSSCCCSCHHHHHHHHHHTTSCCEEE
T ss_pred HHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEE-EEEECCCCcccccCHHHHHHHHHhcCCceEEE
Confidence 23346789999999998532211111 10 123333 233333310 012221 11 26778
Q ss_pred hhhhhHhhHHHHHHHHHHHHH
Q 038053 159 LKEYSKQEISKLMGQMQESYE 179 (231)
Q Consensus 159 is~~~~~~i~~l~~~i~~~~~ 179 (231)
+||++|.|+++++..+.....
T Consensus 154 ~Sa~~g~gi~~l~~~l~~~~~ 174 (207)
T 1vg8_A 154 TSAKEAINVEQAFQTIARNAL 174 (207)
T ss_dssp CBTTTTBSHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999998877543
No 150
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.23 E-value=9.6e-12 Score=104.68 Aligned_cols=89 Identities=17% Similarity=0.140 Sum_probs=58.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC-----------------cEEEEEeCCCCcCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG-----------------QVVNVIDTPGLFDS 86 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~~l~Dtpg~~~~ 86 (231)
.+|+|||.||||||||+|+|++... .. ...+++|..+..+.... .+ ..+.++||||+...
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~-~v-~~~p~tTi~p~~g~v~~-~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGI-EA-ANYPFCTIEPNTGVVPM-PDPRLDALAEIVKPERILPTTMEFVDIAGLVAG 79 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEEC-CCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC-cc-cCCCCceECceEEEEec-CCcccceeeeeecccceeeeEEEEEECCCCccc
Confidence 6899999999999999999999763 22 24555666555444443 22 46889999999864
Q ss_pred CCCchHHHHHHHHHHhhhcCCccEEEEEEECCC
Q 038053 87 SAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRS 119 (231)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~ 119 (231)
......++..++. .+..+|++++|+|+++
T Consensus 80 a~~~~gl~~~fl~----~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 80 ASKGEGLGNKFLA----NIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHHGGGTCCHHH----HHHTCSEEEEEEECSC
T ss_pred ccccchHHHHHHH----HHHhcCeEEEEEecCC
Confidence 3211122222332 2357799999999984
No 151
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.22 E-value=8.9e-13 Score=107.23 Aligned_cols=78 Identities=21% Similarity=0.109 Sum_probs=55.5
Q ss_pred CCCCCC---cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eE--EeeCCcEE
Q 038053 2 SSGMGE---RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TT--VLKDGQVV 75 (231)
Q Consensus 2 ~~~~~~---~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~--~~~~~~~~ 75 (231)
++.|++ ..+|++++|++++| .+++|+|+||||||||+++|+|...+.. |.+....... .. ........
T Consensus 23 ~~~y~~~~~~~vl~~vsl~i~~G--e~~~i~G~nGsGKSTLlk~l~Gl~~p~~----G~I~~~g~~i~~~~~~~~~~~i~ 96 (271)
T 2ixe_A 23 SFAYPNHPNVQVLQGLTFTLYPG--KVTALVGPNGSGKSTVAALLQNLYQPTG----GKVLLDGEPLVQYDHHYLHTQVA 96 (271)
T ss_dssp EECCTTCTTSCCEEEEEEEECTT--CEEEEECSTTSSHHHHHHHHTTSSCCSE----EEEEETTEEGGGBCHHHHHHHEE
T ss_pred EEEeCCCCCceeeEeeEEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCC----CEEEECCEEcccCCHHHHhccEE
Confidence 567765 78999999999999 9999999999999999999999987433 3222221110 00 00023467
Q ss_pred EEEeCCCCcC
Q 038053 76 NVIDTPGLFD 85 (231)
Q Consensus 76 ~l~Dtpg~~~ 85 (231)
++++.|.+++
T Consensus 97 ~v~Q~~~l~~ 106 (271)
T 2ixe_A 97 AVGQEPLLFG 106 (271)
T ss_dssp EECSSCCCCS
T ss_pred EEecCCcccc
Confidence 8888887765
No 152
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.22 E-value=6.5e-11 Score=107.97 Aligned_cols=150 Identities=14% Similarity=0.137 Sum_probs=87.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceee-----------------------------------------
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTC----------------------------------------- 62 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~----------------------------------------- 62 (231)
+.|+++|.+++|||||+|+|+|......+ .+.+|+.+
T Consensus 52 p~I~vvG~~saGKSSllnaL~g~~~LP~g--~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 52 PQIAVVGGQSAGKSSVLENFVGRDFLPRG--SGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp SEEEEEECTTTCHHHHHHHHHSSCCSCCS--SSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCccCcC--CccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 69999999999999999999998653222 22222211
Q ss_pred ----------eeeeEEeeCCcEEEEEeCCCCcCCCCC--chHHHHHHHHHHhhhc-CCccEEEEEEECCCCCCHHHH-H-
Q 038053 63 ----------EMKTTVLKDGQVVNVIDTPGLFDSSAG--SEFVGKEIVKRIGLAK-GGIHAVLVVFSVRSRFSQEEE-A- 127 (231)
Q Consensus 63 ----------~~~~~~~~~~~~~~l~Dtpg~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~il~vvd~~~~~~~~~~-~- 127 (231)
............+.++||||++..... ...+...+...+.... ..+|++++|+|++..+...+. .
T Consensus 130 g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~l 209 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 209 (772)
T ss_dssp CSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHH
T ss_pred CCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHH
Confidence 000111112345789999999863321 1111122222222121 678999999999877665554 2
Q ss_pred ----hcCCCCcHHHHHHHHHhhH-----HHHHh--h------ccchhhhhhhhHhhHHHHHHHHHH
Q 038053 128 ----ANGGQPYTDEFLAELKRGA-----TELRD--Q------QAEVDSLKEYSKQEISKLMGQMQE 176 (231)
Q Consensus 128 ----~~~~~~~~~~~~~~~~~~~-----~~l~~--~------~~~i~~is~~~~~~i~~l~~~i~~ 176 (231)
...+.|.+ .++|++|.-. ..+.. . ..+++++||.+|.|++.|.+.+.+
T Consensus 210 l~~L~~~g~pvI-lVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 210 AKEVDPQGQRTI-GVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp HHHHCTTCSSEE-EEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred HHHHHhcCCCEE-EEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 22233433 4445544210 11211 1 126788999999999999888876
No 153
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.22 E-value=4e-12 Score=100.08 Aligned_cols=141 Identities=14% Similarity=0.136 Sum_probs=80.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
.+|+|+|.+|+|||||+|.|++...... ..+..+.......... .+ ..+.++||||....... .
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~-----------~ 79 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKNEFNMD--SKSTIGVEFATRTLEI-EGKRIKAQIWDTAGQERYRAI-----------T 79 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHCCCCC--------CCSEEEEEEEE-TTEEEEEEEECCTTTTTTTCC-----------C
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCC--CCCcccceeEEEEEEE-CCEEEEEEEEECCCccchhhh-----------H
Confidence 7899999999999999999998764221 1222222222222222 33 46789999996543211 1
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH--------h-cCCCCcHHHHHHHHHhhH---------HHHHhhcc-chhhhhhh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------A-NGGQPYTDEFLAELKRGA---------TELRDQQA-EVDSLKEY 162 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~---------~~l~~~~~-~i~~is~~ 162 (231)
...+..+|++++|+|+++..+..+.. . ....|++ .+.++.|... ..+..... +++.+|++
T Consensus 80 ~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~pii-lv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 158 (223)
T 3cpj_B 80 SAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVG-LIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSAL 158 (223)
T ss_dssp GGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEE-EEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC
T ss_pred HHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEE-EEEECcccccccccCHHHHHHHHHHcCCEEEEEeCC
Confidence 23456889999999998543322211 1 1123333 3334433110 12222222 56778999
Q ss_pred hHhhHHHHHHHHHHHHH
Q 038053 163 SKQEISKLMGQMQESYE 179 (231)
Q Consensus 163 ~~~~i~~l~~~i~~~~~ 179 (231)
++.|+++++..+.....
T Consensus 159 ~~~gi~~l~~~l~~~i~ 175 (223)
T 3cpj_B 159 NSENVDKAFEELINTIY 175 (223)
T ss_dssp -CCCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999988877543
No 154
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.22 E-value=1.9e-11 Score=105.97 Aligned_cols=138 Identities=14% Similarity=0.138 Sum_probs=84.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCccccc-----------------------------cCCCCcceeeeeeeEEeeCCc
Q 038053 23 KRTVVLLGRTGNGKSATGNSILGRKAFKAS-----------------------------ADSSGVTKTCEMKTTVLKDGQ 73 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~~~~~ 73 (231)
..+|+++|.+|+|||||+|.|++....... ....++|.+........ .+.
T Consensus 17 ~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~-~~~ 95 (439)
T 3j2k_7 17 HVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET-EKK 95 (439)
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec-CCe
Confidence 379999999999999999999665321110 01145666655555555 677
Q ss_pred EEEEEeCCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCC-------HHHHH-----hcCCCCcHHHHHHH
Q 038053 74 VVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFS-------QEEEA-----ANGGQPYTDEFLAE 141 (231)
Q Consensus 74 ~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~-------~~~~~-----~~~~~~~~~~~~~~ 141 (231)
.+.++||||..+ +.......+..+|++++|+|++++.. .+... ...+.+.++.++|+
T Consensus 96 ~~~iiDTPGh~~-----------f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK 164 (439)
T 3j2k_7 96 HFTILDAPGHKS-----------FVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINK 164 (439)
T ss_pred EEEEEECCChHH-----------HHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeec
Confidence 899999999543 22333334467899999999986643 12221 22233422234455
Q ss_pred HHhh--------H----HHHHhhc----------cchhhhhhhhHhhHHHHHH
Q 038053 142 LKRG--------A----TELRDQQ----------AEVDSLKEYSKQEISKLMG 172 (231)
Q Consensus 142 ~~~~--------~----~~l~~~~----------~~i~~is~~~~~~i~~l~~ 172 (231)
+|.. . .++...+ -+++++||++|.|+.++..
T Consensus 165 ~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 165 MDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred CCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 4420 0 1222221 1578899999999988655
No 155
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.22 E-value=1.5e-11 Score=95.68 Aligned_cols=138 Identities=15% Similarity=0.104 Sum_probs=78.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
.+|+++|.+|||||||+|.|++...... ..+.+... ....... .+ ..+.++||||...... ..
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~-~~~~~~~-~~~~~~~~i~Dt~G~~~~~~-----------~~ 90 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDEFPEV--YVPTVFEN-YVADIEV-DGKQVELALWDTAGQEDYDR-----------LR 90 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSCC---------CCE-EEEEEEE-TTEEEEEEEEECTTCTTCTT-----------TG
T ss_pred cEEEEECcCCCCHHHHHHHHhcCCCCCc--CCCcccce-EEEEEEE-CCEEEEEEEEECCCcHHHHH-----------HH
Confidence 7999999999999999999998764211 11111111 1111222 33 3678899999754321 11
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHH--H-------hcCCCCcHHHHHHHHHhhH---------------------HHHHh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEE--A-------ANGGQPYTDEFLAELKRGA---------------------TELRD 151 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~--~-------~~~~~~~~~~~~~~~~~~~---------------------~~l~~ 151 (231)
...+..+|++++|+|+++.-+.... . .....|++ .+.++.|... ..+..
T Consensus 91 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 169 (207)
T 2fv8_A 91 PLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPII-LVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAV 169 (207)
T ss_dssp GGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEE-EEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHH
T ss_pred HhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE-EEEEchhhhccccchhhhhhcccCCCCHHHHHHHHH
Confidence 2345788999999999853222221 1 11234443 2333433110 01111
Q ss_pred hcc--chhhhhhhhHhhHHHHHHHHHHH
Q 038053 152 QQA--EVDSLKEYSKQEISKLMGQMQES 177 (231)
Q Consensus 152 ~~~--~i~~is~~~~~~i~~l~~~i~~~ 177 (231)
..+ +++.+|+++|.|+++++..+.+.
T Consensus 170 ~~~~~~~~~~SA~~g~gi~el~~~l~~~ 197 (207)
T 2fv8_A 170 RIQAYDYLECSAKTKEGVREVFETATRA 197 (207)
T ss_dssp HTTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred hcCCCEEEEeeCCCCCCHHHHHHHHHHH
Confidence 111 46778999999999999888764
No 156
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.21 E-value=5.9e-13 Score=106.86 Aligned_cols=77 Identities=19% Similarity=0.132 Sum_probs=55.3
Q ss_pred CCCC--CCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee----EEeeCCcEE
Q 038053 2 SSGM--GERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT----TVLKDGQVV 75 (231)
Q Consensus 2 ~~~~--~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~ 75 (231)
++.| ++..++++++|++++| .+++|+|+||||||||+++|+|...+.. |.+........ ... .....
T Consensus 14 ~~~y~~~~~~vl~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~----G~I~i~g~~~~~~~~~~~-~~~i~ 86 (247)
T 2ff7_A 14 RFRYKPDSPVILDNINLSIKQG--EVIGIVGRSGSGKSTLTKLIQRFYIPEN----GQVLIDGHDLALADPNWL-RRQVG 86 (247)
T ss_dssp EEESSTTSCEEEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHTTSSCCSE----EEEEETTEETTTSCHHHH-HHHEE
T ss_pred EEEeCCCCcceeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCC----cEEEECCEEhhhCCHHHH-HhcEE
Confidence 5677 4678999999999999 9999999999999999999999987433 32222111000 001 23467
Q ss_pred EEEeCCCCcC
Q 038053 76 NVIDTPGLFD 85 (231)
Q Consensus 76 ~l~Dtpg~~~ 85 (231)
++++.|.+++
T Consensus 87 ~v~Q~~~l~~ 96 (247)
T 2ff7_A 87 VVLQDNVLLN 96 (247)
T ss_dssp EECSSCCCTT
T ss_pred EEeCCCcccc
Confidence 8888887765
No 157
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.21 E-value=1e-11 Score=105.23 Aligned_cols=131 Identities=12% Similarity=0.111 Sum_probs=84.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhh
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLA 104 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~ 104 (231)
+|+++|.+|+|||||+|.|+ ..++|.+.......+ .+..+.++||||..+. ...+. ..
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~----------~~giTi~~~~~~~~~-~~~~i~iiDtPGh~~f-------~~~~~----~~ 80 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG----------KKGTSSDITMYNNDK-EGRNMVFVDAHSYPKT-------LKSLI----TA 80 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS----------EEEEESSSEEEEECS-SSSEEEEEECTTTTTC-------HHHHH----HH
T ss_pred EEEEECCCCCCHHHHHHHHH----------hCCEEEEeeEEEEec-CCeEEEEEECCChHHH-------HHHHH----HH
Confidence 89999999999999999998 112333333333444 5678999999997652 11222 23
Q ss_pred cCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHH-HHHhhH-------HHHHhhc-------cchhh--hhhh
Q 038053 105 KGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLA-ELKRGA-------TELRDQQ-------AEVDS--LKEY 162 (231)
Q Consensus 105 ~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~-------~~l~~~~-------~~i~~--is~~ 162 (231)
+..+|.+++|+| ..++..+... .....+..+.+++ ++|... +++.+.+ -++++ +||+
T Consensus 81 ~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~ 159 (370)
T 2elf_A 81 LNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDSTHMHAIDELKAKLKVITSGTVLQDWECISLNTNKS 159 (370)
T ss_dssp HHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGSCHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTT
T ss_pred HHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCCCHHHHHHHHHHHHHHHHhcCCCceEEEecccccc
Confidence 367899999999 7677655543 2233444233445 554310 2333332 16777 9999
Q ss_pred h---HhhHHHHHHHHHHHH
Q 038053 163 S---KQEISKLMGQMQESY 178 (231)
Q Consensus 163 ~---~~~i~~l~~~i~~~~ 178 (231)
+ +.|+++|+..+.+..
T Consensus 160 ~~~~g~gi~~L~~~l~~~~ 178 (370)
T 2elf_A 160 AKNPFEGVDELKARINEVA 178 (370)
T ss_dssp SSSTTTTHHHHHHHHHHHH
T ss_pred cCcCCCCHHHHHHHHHhhc
Confidence 9 999999988776643
No 158
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.21 E-value=2.1e-11 Score=103.55 Aligned_cols=95 Identities=16% Similarity=0.169 Sum_probs=51.1
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeC----------------CcEEEEEeC
Q 038053 17 TSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKD----------------GQVVNVIDT 80 (231)
Q Consensus 17 ~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~l~Dt 80 (231)
.+..+ .+|+|||.||||||||+|+|+|.... . ...+++|.....+...... ...+.++||
T Consensus 18 ~i~~~--~kvgIVG~pnvGKSTL~n~Ltg~~~~-~-~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDt 93 (396)
T 2ohf_A 18 RFGTS--LKIGIVGLPNVGKSTFFNVLTNSQAS-A-ENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDI 93 (396)
T ss_dssp CSSSC--CCEEEECCSSSSHHHHHHHHHC---------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEEC
T ss_pred hccCC--CEEEEECCCCCCHHHHHHHHHCCCcc-c-cCCCccccCceeEEEEECCccceeeccccCcccccccccEEEEC
Confidence 45566 89999999999999999999998642 2 2455666655554443311 234889999
Q ss_pred CCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCC
Q 038053 81 PGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRS 119 (231)
Q Consensus 81 pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~ 119 (231)
||+....+....++..+... +..+|++++|+|+.+
T Consensus 94 pGl~~~as~~~glg~~~l~~----ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 94 AGLVKGAHNGQGLGNAFLSH----ISACDGIFHLTRAFE 128 (396)
T ss_dssp CC-----------CCHHHHH----HHTSSSEEEEEEC--
T ss_pred CCcccccchhhHHHHHHHHH----HHhcCeEEEEEecCC
Confidence 99987544333333333333 357799999999873
No 159
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.21 E-value=2e-10 Score=96.32 Aligned_cols=39 Identities=15% Similarity=0.049 Sum_probs=33.2
Q ss_pred CCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 038053 6 GERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGR 46 (231)
Q Consensus 6 ~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~ 46 (231)
+...+++++++.+.++ .+|+++|+||+|||||+|.|++.
T Consensus 41 ~~~~~~~~l~~~~~~~--~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 41 LSTQLLDAIMPYCGNT--LRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp HHHHHHHHHGGGCSCS--EEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhCCcccCCC--EEEEEEcCCCCCHHHHHHHHHHH
Confidence 3455677788888888 99999999999999999999753
No 160
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.20 E-value=4.7e-11 Score=91.76 Aligned_cols=139 Identities=19% Similarity=0.136 Sum_probs=77.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeC--CcEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
.+|+++|.+|||||||+|.|++...... ...|............ ...+.++||||..... .+.
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~~--- 73 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKGTFRDT----YIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFP--------AMQ--- 73 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCCT----TSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCH--------HHH---
T ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCc----ccCccccceeEEEEECCEEEEEEEEeCCChHHhH--------HHH---
Confidence 7999999999999999999998654211 1111111111111112 2367899999966421 111
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH--------hc---CCCCcHHHHHHHHHhh--------HHHHHhhcc-chhhhhh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------AN---GGQPYTDEFLAELKRG--------ATELRDQQA-EVDSLKE 161 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~~---~~~~~~~~~~~~~~~~--------~~~l~~~~~-~i~~is~ 161 (231)
...+..+|++++|+|+++..+..... .. ...|++ .+.++.|.. ...+..... +++.+|+
T Consensus 74 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa 152 (199)
T 2gf0_A 74 RLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVM-LVGNKCDETQREVDTREAQAVAQEWKCAFMETSA 152 (199)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEE-EEEECTTCSSCSSCHHHHHHHHHHHTCEEEECBT
T ss_pred HHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECccCCccccCHHHHHHHHHHhCCeEEEEec
Confidence 11224569999999998422211110 10 123332 233333310 012222222 5777899
Q ss_pred hhHhhHHHHHHHHHHHH
Q 038053 162 YSKQEISKLMGQMQESY 178 (231)
Q Consensus 162 ~~~~~i~~l~~~i~~~~ 178 (231)
++|.|+++++..+...+
T Consensus 153 ~~~~gi~~l~~~l~~~~ 169 (199)
T 2gf0_A 153 KMNYNVKELFQELLTLE 169 (199)
T ss_dssp TTTBSHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999998887654
No 161
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.20 E-value=2.6e-11 Score=107.17 Aligned_cols=92 Identities=16% Similarity=0.230 Sum_probs=62.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccc--c------------------cCCCCcceeeeeeeEEeeCCcEEEEEeCCCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKA--S------------------ADSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 83 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~--~------------------~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~ 83 (231)
.+|+|+|++|||||||+|.|++...... + ....++|.........+ .+..+.++||||.
T Consensus 14 r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~liDTPG~ 92 (528)
T 3tr5_A 14 RTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPY-KDYLINLLDTPGH 92 (528)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEE-TTEEEEEECCCCS
T ss_pred CEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEe-CCEEEEEEECCCc
Confidence 7999999999999999999962211100 0 00123444444444555 7788999999998
Q ss_pred cCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH
Q 038053 84 FDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA 127 (231)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~ 127 (231)
.+.. ......+..+|++++|+|++++.......
T Consensus 93 ~df~-----------~~~~~~l~~aD~allVvDa~~g~~~~t~~ 125 (528)
T 3tr5_A 93 ADFT-----------EDTYRTLTAVDSALMVIDAAKGVEPRTIK 125 (528)
T ss_dssp TTCC-----------HHHHHGGGGCSEEEEEEETTTCSCHHHHH
T ss_pred hhHH-----------HHHHHHHHhCCEEEEEEeCCCCCCHHHHH
Confidence 7632 11233456789999999999877776654
No 162
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.20 E-value=2.1e-10 Score=98.45 Aligned_cols=118 Identities=16% Similarity=0.207 Sum_probs=58.9
Q ss_pred CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccC----CCCcceeee-eeeEEeeC--Cc
Q 038053 1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASAD----SSGVTKTCE-MKTTVLKD--GQ 73 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~----~~~~t~~~~-~~~~~~~~--~~ 73 (231)
+++.|++..++++++|. |+|+|+||||||||+|+|+|...+..+.. ....|.... ........ ..
T Consensus 17 l~~~y~~~~vl~~vsf~--------I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~ 88 (418)
T 2qag_C 17 LPNQVYRKSVKRGFEFT--------LMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQL 88 (418)
T ss_dssp CCCCTTTTTCC-CCCEE--------EEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CE
T ss_pred cceeECCEEEecCCCEE--------EEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCccc
Confidence 35677777777776654 59999999999999999999875322110 001111111 11111101 23
Q ss_pred EEEEEeCCCCcCCCCC---chHHHHHHHHHHh----------hh-c--CCccEEEEEEECC-CCCCHHHH
Q 038053 74 VVNVIDTPGLFDSSAG---SEFVGKEIVKRIG----------LA-K--GGIHAVLVVFSVR-SRFSQEEE 126 (231)
Q Consensus 74 ~~~l~Dtpg~~~~~~~---~~~~~~~~~~~~~----------~~-~--~~~~~il~vvd~~-~~~~~~~~ 126 (231)
.+.++||||+...... ...+...+...+. .+ + +.+|+++++++++ ..++..+.
T Consensus 89 ~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~ 158 (418)
T 2qag_C 89 LLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI 158 (418)
T ss_dssp EEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH
T ss_pred ceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH
Confidence 5789999998753211 0111111111111 11 1 3466788888886 57888774
No 163
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.20 E-value=2.6e-11 Score=91.62 Aligned_cols=133 Identities=18% Similarity=0.184 Sum_probs=78.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
.+|+++|.+|||||||+|.+++.......+ ..+ ......... .+ ..+.++||||... ..+
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~-t~~---~~~~~~~~~-~~~~~~l~i~Dt~G~~~------------~~~- 69 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGSYQVLEK-TES---EQYKKEMLV-DGQTHLVLIREEAGAPD------------AKF- 69 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSCCCCCSS-CSS---SEEEEEEEE-TTEEEEEEEEECSSSCC------------HHH-
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCcCC-Ccc---eeEEEEEEE-CCEEEEEEEEECCCCch------------hHH-
Confidence 799999999999999999999875422111 111 111112222 33 3567899999653 111
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH---------hc---CCCCcHHHHHHHHHh-----------hHHHHHhhc--cch
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA---------AN---GGQPYTDEFLAELKR-----------GATELRDQQ--AEV 156 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~---------~~---~~~~~~~~~~~~~~~-----------~~~~l~~~~--~~i 156 (231)
+..+|++++|+|+++..+..... .. ...|++ .+.++.|. +...+.... .++
T Consensus 70 ---~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~ 145 (178)
T 2iwr_A 70 ---SGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALA-LVGTQDRISASSPRVVGDARARALXADMKRCSY 145 (178)
T ss_dssp ---HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEE-EEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEE
T ss_pred ---HHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECccccccccCcCCHHHHHHHHHhhcCCeE
Confidence 23469999999998543322211 11 123333 33344332 001222222 267
Q ss_pred hhhhhhhHhhHHHHHHHHHHHH
Q 038053 157 DSLKEYSKQEISKLMGQMQESY 178 (231)
Q Consensus 157 ~~is~~~~~~i~~l~~~i~~~~ 178 (231)
+.+||++|.|+++++..+....
T Consensus 146 ~~~Sa~~~~~i~~lf~~l~~~~ 167 (178)
T 2iwr_A 146 YETXATYGLNVDRVFQEVAQKV 167 (178)
T ss_dssp EEEBTTTTBTHHHHHHHHHHHH
T ss_pred EEEeccccCCHHHHHHHHHHHH
Confidence 7899999999999988877654
No 164
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.20 E-value=1e-12 Score=106.64 Aligned_cols=85 Identities=13% Similarity=0.157 Sum_probs=57.8
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCC--ccccccCCCCcceeeeee-eE---EeeCCcEE
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRK--AFKASADSSGVTKTCEMK-TT---VLKDGQVV 75 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~--~~~~~~~~~~~t~~~~~~-~~---~~~~~~~~ 75 (231)
++.|+++.++++++|++++| .+++|+|+||||||||+++|+|.. .+. .|.+....... .. ........
T Consensus 27 ~~~y~~~~vl~~vsl~i~~G--e~~~l~G~NGsGKSTLlk~l~Gl~~~~p~----~G~I~~~g~~i~~~~~~~~~~~~i~ 100 (267)
T 2zu0_C 27 HVSVEDKAILRGLSLDVHPG--EVHAIMGPNGSGKSTLSATLAGREDYEVT----GGTVEFKGKDLLALSPEDRAGEGIF 100 (267)
T ss_dssp EEEETTEEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHHTCTTCEEE----EEEEEETTEEGGGSCHHHHHHHTEE
T ss_pred EEEECCEEEEEeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCC----CeEEEECCEECCcCCHHHHhhCCEE
Confidence 56788888999999999999 999999999999999999999984 322 22222211100 00 00011256
Q ss_pred EEEeCCCCcCCCCCchH
Q 038053 76 NVIDTPGLFDSSAGSEF 92 (231)
Q Consensus 76 ~l~Dtpg~~~~~~~~~~ 92 (231)
++++.|.+++..++.+.
T Consensus 101 ~v~Q~~~l~~~~tv~e~ 117 (267)
T 2zu0_C 101 MAFQYPVEIPGVSNQFF 117 (267)
T ss_dssp EECSSCCCCTTCBHHHH
T ss_pred EEccCccccccccHHHH
Confidence 78898888776554443
No 165
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.19 E-value=1.1e-12 Score=110.13 Aligned_cols=87 Identities=17% Similarity=0.093 Sum_probs=63.0
Q ss_pred CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-EEeeCCcEEEEEe
Q 038053 1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-TVLKDGQVVNVID 79 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~D 79 (231)
+++.|++. ++++++|++++| ..++|+|+||||||||+++|+|...+.. |.+........ .........++++
T Consensus 7 l~~~y~~~-~l~~vsl~i~~G--e~~~llGpnGsGKSTLLr~iaGl~~p~~----G~I~~~g~~i~~~~~~~r~ig~v~Q 79 (348)
T 3d31_A 7 LSRKWKNF-SLDNLSLKVESG--EYFVILGPTGAGKTLFLELIAGFHVPDS----GRILLDGKDVTDLSPEKHDIAFVYQ 79 (348)
T ss_dssp EEEECSSC-EEEEEEEEECTT--CEEEEECCCTHHHHHHHHHHHTSSCCSE----EEEEETTEECTTSCHHHHTCEEECT
T ss_pred EEEEECCE-EEeeeEEEEcCC--CEEEEECCCCccHHHHHHHHHcCCCCCC----cEEEECCEECCCCchhhCcEEEEec
Confidence 36788887 999999999999 9999999999999999999999987433 32222111100 0000234678999
Q ss_pred CCCCcCCCCCchHHH
Q 038053 80 TPGLFDSSAGSEFVG 94 (231)
Q Consensus 80 tpg~~~~~~~~~~~~ 94 (231)
.+.+++..++.+++.
T Consensus 80 ~~~l~~~ltv~enl~ 94 (348)
T 3d31_A 80 NYSLFPHMNVKKNLE 94 (348)
T ss_dssp TCCCCTTSCHHHHHH
T ss_pred CcccCCCCCHHHHHH
Confidence 999998777666553
No 166
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.19 E-value=3.3e-11 Score=91.22 Aligned_cols=139 Identities=17% Similarity=0.101 Sum_probs=74.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEe-eCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG 102 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~ 102 (231)
.+|+++|.+|+|||||+|.+++..... ...+++.......... .....+.++||||...... ...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~~~ 74 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSNTFPT---DYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNR-----------LRP 74 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCCC-------------CBCCCC-------CEEECCCC-CTTTT-----------TGG
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCC---CCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhh-----------hHH
Confidence 799999999999999999999765311 1111111111111111 0233456999999754221 122
Q ss_pred hhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhh-------------------HHHHHhhcc
Q 038053 103 LAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRG-------------------ATELRDQQA 154 (231)
Q Consensus 103 ~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~-------------------~~~l~~~~~ 154 (231)
..+..+|++++|+|+++..+..... .....|++ .+.++.|.. ...+....+
T Consensus 75 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 153 (182)
T 3bwd_D 75 LSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIV-LVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIG 153 (182)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEE-EEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHT
T ss_pred hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE-EEEechhhhcCcccccccccCCCCCHHHHHHHHHHcC
Confidence 3457789999999998533222211 11234443 222332210 012222222
Q ss_pred --chhhhhhhhHhhHHHHHHHHHHH
Q 038053 155 --EVDSLKEYSKQEISKLMGQMQES 177 (231)
Q Consensus 155 --~i~~is~~~~~~i~~l~~~i~~~ 177 (231)
+++.+|+++|.|+++++..+...
T Consensus 154 ~~~~~~~Sa~~~~gi~~l~~~l~~~ 178 (182)
T 3bwd_D 154 APAYIECSSKSQENVKGVFDAAIRV 178 (182)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 56779999999999998887653
No 167
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.19 E-value=1.1e-10 Score=96.36 Aligned_cols=169 Identities=14% Similarity=0.138 Sum_probs=61.0
Q ss_pred CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCC-CccccccCCC----Ccceeee-eeeEEe--eCC
Q 038053 1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGR-KAFKASADSS----GVTKTCE-MKTTVL--KDG 72 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~-~~~~~~~~~~----~~t~~~~-~~~~~~--~~~ 72 (231)
+++.|+++.++++++| .|+|+|+||||||||+|+|+|. ..+..+.... ..|.... ...... ...
T Consensus 4 l~~~~~~~~~l~~~~~--------~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~ 75 (301)
T 2qnr_A 4 LPNQVHRKSVKKGFEF--------TLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVK 75 (301)
T ss_dssp --------------CE--------EEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CC
T ss_pred CcceECCEEEEcCCCE--------EEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcc
Confidence 4678888888887665 5599999999999999999997 3322210000 0111111 111111 113
Q ss_pred cEEEEEeCCCCcCCCC---CchHHHHHH----HHHHhhh---------cCCccEEEEEEECCC-CCCHHHHH----hcCC
Q 038053 73 QVVNVIDTPGLFDSSA---GSEFVGKEI----VKRIGLA---------KGGIHAVLVVFSVRS-RFSQEEEA----ANGG 131 (231)
Q Consensus 73 ~~~~l~Dtpg~~~~~~---~~~~~~~~~----~~~~~~~---------~~~~~~il~vvd~~~-~~~~~~~~----~~~~ 131 (231)
..+.+.||||+..... ....+...+ ...+... ..++++++++++++. .++..+.. ....
T Consensus 76 ~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~~~ 155 (301)
T 2qnr_A 76 LRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIHNK 155 (301)
T ss_dssp EEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHTTT
T ss_pred cCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHHhc
Confidence 4678999999853210 011111111 1222211 134567888888754 47776643 1111
Q ss_pred CCcH-----HHHHHHHHhh--HHHHHhh---cc-chhhhhhhhHhhHHHHHHHHHHHH
Q 038053 132 QPYT-----DEFLAELKRG--ATELRDQ---QA-EVDSLKEYSKQEISKLMGQMQESY 178 (231)
Q Consensus 132 ~~~~-----~~~~~~~~~~--~~~l~~~---~~-~i~~is~~~~~~i~~l~~~i~~~~ 178 (231)
.+.+ .++.+..+.. .+.+.+. .+ +++.+|++++ ++++++..+....
T Consensus 156 ~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i 212 (301)
T 2qnr_A 156 VNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLL 212 (301)
T ss_dssp SCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHH
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHh
Confidence 1222 1121110000 0111111 12 6777899999 9998877666544
No 168
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.19 E-value=8.1e-11 Score=91.58 Aligned_cols=139 Identities=19% Similarity=0.118 Sum_probs=81.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
.+|+++|.+|+|||||+|.+++..... ...+++.......... .+ ..+.++||||....... .
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~~~~~---~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~-----------~ 74 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSNKFPT---DYIPTVFDNFSANVAV-DGQIVNLGLWDTAGQEDYSRL-----------R 74 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCS---SCCCSSCCCEEEEEEC-SSCEEEEEEECCCCCCCCCC-------------
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCc---cCCCccceeEEEEEEE-CCEEEEEEEEECCCcHHHHHH-----------H
Confidence 799999999999999999999765311 1111111111111222 22 47789999998653211 1
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHh-----------------hHHHHHhhcc-
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKR-----------------GATELRDQQA- 154 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~- 154 (231)
...+..+|++++|+|+++..+..... .....|++ .+.++.|. +...+....+
T Consensus 75 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 153 (212)
T 2j0v_A 75 PLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIV-LVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGA 153 (212)
T ss_dssp CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEE-EEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTC
T ss_pred HhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE-EEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCC
Confidence 23457889999999998533222211 11234443 22233221 0012222222
Q ss_pred -chhhhhhhhHhhHHHHHHHHHHHH
Q 038053 155 -EVDSLKEYSKQEISKLMGQMQESY 178 (231)
Q Consensus 155 -~i~~is~~~~~~i~~l~~~i~~~~ 178 (231)
+++.+|+++|.|+++++..+....
T Consensus 154 ~~~~~~Sa~~g~gi~~l~~~l~~~~ 178 (212)
T 2j0v_A 154 AAYIECSSKTQQNVKAVFDTAIKVV 178 (212)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHH
Confidence 677799999999999988877654
No 169
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.19 E-value=1.7e-11 Score=94.83 Aligned_cols=139 Identities=14% Similarity=0.109 Sum_probs=79.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHH
Q 038053 23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKR 100 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~ 100 (231)
..+|+++|.+|+|||||+|.+++...... ..+.++.... ..... .+ ..+.++||||...... .
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~-~~~~~-~~~~~~l~i~Dt~G~~~~~~-----------~ 89 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQFPEV--YVPTVFENYI-ADIEV-DGKQVELALWDTAGQEDYDR-----------L 89 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSS--CCCSSCCCCE-EEEEE-TTEEEEEEEECCCCSGGGTT-----------T
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCCcc--cCCcccceEE-EEEEE-CCEEEEEEEEECCCchhHHH-----------H
Confidence 36899999999999999999998764211 1121111111 11222 33 3678899999653211 1
Q ss_pred HhhhcCCccEEEEEEECCCCCCHHHH-H--------hcCCCCcHHHHHHHHHhhH---------------------HHHH
Q 038053 101 IGLAKGGIHAVLVVFSVRSRFSQEEE-A--------ANGGQPYTDEFLAELKRGA---------------------TELR 150 (231)
Q Consensus 101 ~~~~~~~~~~il~vvd~~~~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~---------------------~~l~ 150 (231)
....+..+|++++|+|+++..+.... . .....|++ .+.++.|... ..+.
T Consensus 90 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 168 (201)
T 2gco_A 90 RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII-LVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMA 168 (201)
T ss_dssp GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEE-EEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHH
T ss_pred HHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE-EEEecHHhhcCccchhhhcccccCcCCHHHHHHHH
Confidence 12345788999999999853222221 1 11233433 2333333100 0111
Q ss_pred hhcc--chhhhhhhhHhhHHHHHHHHHHH
Q 038053 151 DQQA--EVDSLKEYSKQEISKLMGQMQES 177 (231)
Q Consensus 151 ~~~~--~i~~is~~~~~~i~~l~~~i~~~ 177 (231)
...+ +++.+|+++|.|+++++..+.+.
T Consensus 169 ~~~~~~~~~~~SA~~g~gi~~l~~~i~~~ 197 (201)
T 2gco_A 169 NRISAFGYLECSAKTKEGVREVFEMATRA 197 (201)
T ss_dssp HHTTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HhCCCcEEEEeeCCCCCCHHHHHHHHHHH
Confidence 1111 56778999999999998887664
No 170
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.19 E-value=1.6e-10 Score=97.38 Aligned_cols=95 Identities=13% Similarity=0.072 Sum_probs=55.1
Q ss_pred CCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHHh-cCCCCcHHHHHHHHHhh----
Q 038053 71 DGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEAA-NGGQPYTDEFLAELKRG---- 145 (231)
Q Consensus 71 ~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---- 145 (231)
.+..+.++||||+... .. .....+|.+++|+|+...-....... ....+.+ .++|++|..
T Consensus 170 ~~~~~iiiDTpGi~~~-------~~-------~~~~~aD~vl~V~d~~~~~~~~~l~~~~~~~p~i-vVlNK~Dl~~~~~ 234 (355)
T 3p32_A 170 AGFDVILIETVGVGQS-------EV-------AVANMVDTFVLLTLARTGDQLQGIKKGVLELADI-VVVNKADGEHHKE 234 (355)
T ss_dssp TTCCEEEEEECSCSSH-------HH-------HHHTTCSEEEEEEESSTTCTTTTCCTTSGGGCSE-EEEECCCGGGHHH
T ss_pred CCCCEEEEeCCCCCcH-------HH-------HHHHhCCEEEEEECCCCCccHHHHHHhHhhcCCE-EEEECCCCcChhH
Confidence 4577899999997651 11 11267899999999863221111000 0001221 223333211
Q ss_pred ----HHHHHhh-----------ccchhhhhhhhHhhHHHHHHHHHHHHHH
Q 038053 146 ----ATELRDQ-----------QAEVDSLKEYSKQEISKLMGQMQESYED 180 (231)
Q Consensus 146 ----~~~l~~~-----------~~~i~~is~~~~~~i~~l~~~i~~~~~~ 180 (231)
...+... ..+++.+|+++|.|+++++..+.+.+..
T Consensus 235 ~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 235 ARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 0123322 1368889999999999999999887654
No 171
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.19 E-value=1.6e-12 Score=105.45 Aligned_cols=47 Identities=17% Similarity=0.126 Sum_probs=41.7
Q ss_pred CCCCC--C---cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccc
Q 038053 2 SSGMG--E---RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFK 50 (231)
Q Consensus 2 ~~~~~--~---~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~ 50 (231)
++.|+ + ..++++++|++++| .+++|+|+||||||||+++|+|...+.
T Consensus 9 ~~~y~~~~~~~~~vl~~vsl~i~~G--e~~~liG~nGsGKSTLl~~i~Gl~~p~ 60 (266)
T 2yz2_A 9 SHIFHRGTPLEKKALENVSLVINEG--ECLLVAGNTGSGKSTLLQIVAGLIEPT 60 (266)
T ss_dssp EEEESTTSTTCEEEEEEEEEEECTT--CEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred EEEecCCCccccceeeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 45665 4 57999999999999 999999999999999999999998743
No 172
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.18 E-value=1.9e-10 Score=97.07 Aligned_cols=103 Identities=18% Similarity=0.183 Sum_probs=61.9
Q ss_pred ccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeee-------------------------
Q 038053 9 VIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCE------------------------- 63 (231)
Q Consensus 9 ~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~------------------------- 63 (231)
.+++++++.++ .|++||.+|||||||+|+|+|...... ..+.+|..+.
T Consensus 25 ~~l~~i~~~lp-----~I~vvG~~~sGKSSLln~l~g~~~lp~--~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~ 97 (360)
T 3t34_A 25 SALPTLWDSLP-----AIAVVGGQSSGKSSVLESIVGKDFLPR--GSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKF 97 (360)
T ss_dssp CCC----CCCC-----EEEEECBTTSSHHHHHHHHHTSCCSCC--CSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCB
T ss_pred cccccccccCC-----EEEEECCCCCcHHHHHHHHhCCCcCCC--CCCcccCcceEEEEecCCCcccceeeeecCCCccc
Confidence 46777777776 799999999999999999999764222 1222221100
Q ss_pred -----------------------------eeeEEeeCCcEEEEEeCCCCcCCCCC--chHHHHHHHHHHhhhcCCccEEE
Q 038053 64 -----------------------------MKTTVLKDGQVVNVIDTPGLFDSSAG--SEFVGKEIVKRIGLAKGGIHAVL 112 (231)
Q Consensus 64 -----------------------------~~~~~~~~~~~~~l~Dtpg~~~~~~~--~~~~~~~~~~~~~~~~~~~~~il 112 (231)
...........+.++||||+...... .......+...+...+..+|+++
T Consensus 98 ~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~ii 177 (360)
T 3t34_A 98 TDFAAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCII 177 (360)
T ss_dssp SCHHHHHHHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEE
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEE
Confidence 00001112346789999999864321 22344455555555567899999
Q ss_pred EEEECC
Q 038053 113 VVFSVR 118 (231)
Q Consensus 113 ~vvd~~ 118 (231)
+++++.
T Consensus 178 lvv~~~ 183 (360)
T 3t34_A 178 LAISPA 183 (360)
T ss_dssp EEEEET
T ss_pred EEeecc
Confidence 999864
No 173
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.18 E-value=1.1e-10 Score=100.19 Aligned_cols=142 Identities=11% Similarity=0.178 Sum_probs=78.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCccccc-cCCCCcceeeeeeeEEee--------------C--------CcEEEEEe
Q 038053 23 KRTVVLLGRTGNGKSATGNSILGRKAFKAS-ADSSGVTKTCEMKTTVLK--------------D--------GQVVNVID 79 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~-~~~~~~t~~~~~~~~~~~--------------~--------~~~~~l~D 79 (231)
..+|+++|..|+|||||++.|+|....... ....++|....+...... . ...+.++|
T Consensus 8 ~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiD 87 (408)
T 1s0u_A 8 EVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVD 87 (408)
T ss_dssp CEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEEE
Confidence 379999999999999999999986432110 123445554332221110 0 15788999
Q ss_pred CCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCC-CHHHHH------hcCCCCcHHHHHHHHHhh-------
Q 038053 80 TPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRF-SQEEEA------ANGGQPYTDEFLAELKRG------- 145 (231)
Q Consensus 80 tpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~------- 145 (231)
|||.. .+...+......+|.+++|+|+++++ ..+... .....+++ .++|++|..
T Consensus 88 tPGh~-----------~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~ii-vv~NK~Dl~~~~~~~~ 155 (408)
T 1s0u_A 88 SPGHE-----------TLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKII-IVQNKIDLVDEKQAEE 155 (408)
T ss_dssp CSSHH-----------HHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEE-EEEECTTSSCTTTTTT
T ss_pred CCCHH-----------HHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEE-EEEEccCCCCHHHHHH
Confidence 99943 23334444557889999999998765 433322 12222332 333443310
Q ss_pred -HHHHHhhc-------cchhhhhhhhHhhHHHHHHHHHH
Q 038053 146 -ATELRDQQ-------AEVDSLKEYSKQEISKLMGQMQE 176 (231)
Q Consensus 146 -~~~l~~~~-------~~i~~is~~~~~~i~~l~~~i~~ 176 (231)
.+++.+.+ .+++++|+++|.|++.|++.+..
T Consensus 156 ~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~ 194 (408)
T 1s0u_A 156 NYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQD 194 (408)
T ss_dssp HHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 02232222 16788999999999988887765
No 174
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.17 E-value=7e-11 Score=89.98 Aligned_cols=139 Identities=12% Similarity=0.029 Sum_probs=79.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeee-eeEEe-eCCcEEEEEeCCCCcCCCCCchHHHHHHHHH
Q 038053 23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEM-KTTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKR 100 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~-~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~ 100 (231)
..+|+++|.+|+|||||+|.+++.... .....|..... ..... .....+.++||||...... .
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~ 71 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKDCFP----ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDN-----------V 71 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCC----SSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTT-----------T
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCCCC----CCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhh-----------h
Confidence 378999999999999999999986542 11111211111 11121 1234678999999754211 1
Q ss_pred HhhhcCCccEEEEEEECCCCCCHHHH-H--------hcCCCCcHHHHHHHHHhh---------------------HHHHH
Q 038053 101 IGLAKGGIHAVLVVFSVRSRFSQEEE-A--------ANGGQPYTDEFLAELKRG---------------------ATELR 150 (231)
Q Consensus 101 ~~~~~~~~~~il~vvd~~~~~~~~~~-~--------~~~~~~~~~~~~~~~~~~---------------------~~~l~ 150 (231)
....+..+|++++|+|+++..+.... . .....|++ .+.++.|.. ...+.
T Consensus 72 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 150 (184)
T 1m7b_A 72 RPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKML-LVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMA 150 (184)
T ss_dssp GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEE-EEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHH
T ss_pred HHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEE-EEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHH
Confidence 12345788999999999854332222 1 11233333 222332210 01222
Q ss_pred hhcc--chhhhhhh-hHhhHHHHHHHHHHH
Q 038053 151 DQQA--EVDSLKEY-SKQEISKLMGQMQES 177 (231)
Q Consensus 151 ~~~~--~i~~is~~-~~~~i~~l~~~i~~~ 177 (231)
...+ +++.+|++ ++.|+++++..+.+.
T Consensus 151 ~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~ 180 (184)
T 1m7b_A 151 KQIGAATYIECSALQSENSVRDIFHVATLA 180 (184)
T ss_dssp HHHTCSEEEECBTTTBHHHHHHHHHHHHHH
T ss_pred HHcCCcEEEEeeecCCCcCHHHHHHHHHHH
Confidence 2222 56778998 689999998887653
No 175
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.15 E-value=1.8e-10 Score=88.00 Aligned_cols=136 Identities=16% Similarity=0.123 Sum_probs=79.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHH
Q 038053 22 GKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVK 99 (231)
Q Consensus 22 ~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~ 99 (231)
...+|+|+|.+|||||||+|.+++..... ....|.......... .+ ..+.++||||.... .
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~~~~~----~~~~t~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~--------~---- 81 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTGTYVQ----EESPEGGRFKKEIVV-DGQSYLLLIRDEGGPPEL--------Q---- 81 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHSSCCC----CCCTTCEEEEEEEEE-TTEEEEEEEEECSSSCCH--------H----
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCCCC----CcCCCcceEEEEEEE-CCEEEEEEEEECCCChhh--------h----
Confidence 34799999999999999999888765321 111122211122222 44 34567999997641 0
Q ss_pred HHhhhcCCccEEEEEEECCCCCCHHHHH------hc----CCCCcHHHHHHHHHh-----------hHHHHHhhc--cch
Q 038053 100 RIGLAKGGIHAVLVVFSVRSRFSQEEEA------AN----GGQPYTDEFLAELKR-----------GATELRDQQ--AEV 156 (231)
Q Consensus 100 ~~~~~~~~~~~il~vvd~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~-----------~~~~l~~~~--~~i 156 (231)
+ +..+|++++|+|+++..+..+.. .. ...|++ .+.++.|. ....+.... .++
T Consensus 82 ~----~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~ 156 (184)
T 3ihw_A 82 F----AAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMV-LVGTQDAISAANPRVIDDSRARKLSTDLKRCTY 156 (184)
T ss_dssp H----HHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEE-EEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEE
T ss_pred e----ecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECcccccccccccCHHHHHHHHHHcCCCeE
Confidence 2 23469999999998543322211 11 122332 23333331 001233333 256
Q ss_pred hhhhhhhHhhHHHHHHHHHHHHH
Q 038053 157 DSLKEYSKQEISKLMGQMQESYE 179 (231)
Q Consensus 157 ~~is~~~~~~i~~l~~~i~~~~~ 179 (231)
+.+|+++|.|+++++..+.....
T Consensus 157 ~e~Sa~~~~gv~~lf~~l~~~i~ 179 (184)
T 3ihw_A 157 YETCATYGLNVERVFQDVAQKVV 179 (184)
T ss_dssp EEEBTTTTBTHHHHHHHHHHHHH
T ss_pred EEecCCCCCCHHHHHHHHHHHHH
Confidence 77899999999999988876543
No 176
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.15 E-value=8.7e-13 Score=102.00 Aligned_cols=140 Identities=17% Similarity=0.136 Sum_probs=78.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHH
Q 038053 23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKR 100 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~ 100 (231)
..+|+|+|.+|||||||+|.|++...... ..++.+.+........ .+ ..+.++||||.......
T Consensus 33 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~----------- 98 (199)
T 3l0i_B 33 LFKLLLIGDSGVGKSCLLLRFADDTYTES--YISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTI----------- 98 (199)
T ss_dssp EEEEEEECCTTSCCTTTTTSSBCCCCCCH--HHHHHCCSEEEEEEEE-TTEEEEEEEECCTTCTTCCCC-----------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCC--cCCcccceEEEEEEEE-CCEEEEEEEEECCCcHhHHHH-----------
Confidence 37999999999999999999998754221 1122222223333333 33 46789999996543221
Q ss_pred HhhhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhhH---------HHHHhhcc-chhhhhh
Q 038053 101 IGLAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRGA---------TELRDQQA-EVDSLKE 161 (231)
Q Consensus 101 ~~~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~---------~~l~~~~~-~i~~is~ 161 (231)
....+..+|++++|+|+++..+..... .....|++ .+.++.|... ..+..... +++.+|+
T Consensus 99 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i-lv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA 177 (199)
T 3l0i_B 99 TSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKL-LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSA 177 (199)
T ss_dssp SCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEE-EC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEE-EEEECccCCccccCCHHHHHHHHHHcCCeEEEEEC
Confidence 112346789999999998543322221 11123333 3445544211 12222222 6778999
Q ss_pred hhHhhHHHHHHHHHHH
Q 038053 162 YSKQEISKLMGQMQES 177 (231)
Q Consensus 162 ~~~~~i~~l~~~i~~~ 177 (231)
+++.|+++++..+.+.
T Consensus 178 ~~g~gv~~l~~~l~~~ 193 (199)
T 3l0i_B 178 KNATNVEQSFMTMAAE 193 (199)
T ss_dssp ---HHHHHHHHHHTTT
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999998887653
No 177
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.15 E-value=1.5e-12 Score=114.89 Aligned_cols=140 Identities=14% Similarity=0.191 Sum_probs=92.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
++|+++|.+|+|||||+|.|++...... ..+++|.+..........+..+.++||||...... ....
T Consensus 5 pkV~IvG~~~vGKTSLl~~L~~~~~~~~--~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~-----------~~~~ 71 (537)
T 3izy_P 5 PVVTIMGHVDHGKTTLLDKLRKTQVAAM--EAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSA-----------MRAR 71 (537)
T ss_dssp CBCEEEESTTTTHHHHHHHHHHHHHHHS--SSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTT-----------SBBS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcccc--cCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHH-----------HHHH
Confidence 7899999999999999999998764322 34566655444434332455788999999654221 1123
Q ss_pred hcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhhH-------HHHHhh---c------cchhhhhhh
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRGA-------TELRDQ---Q------AEVDSLKEY 162 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-------~~l~~~---~------~~i~~is~~ 162 (231)
.+..+|.+++|+|++++....... .....|++ .++|++|... ..+... . .+++++|++
T Consensus 72 ~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiI-VViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAk 150 (537)
T 3izy_P 72 GTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIV-LAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSAL 150 (537)
T ss_dssp SSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEE-ECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSS
T ss_pred HHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEE-EEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECC
Confidence 446789999999999877776654 23344543 4556655311 122211 0 167889999
Q ss_pred hHhhHHHHHHHHHHH
Q 038053 163 SKQEISKLMGQMQES 177 (231)
Q Consensus 163 ~~~~i~~l~~~i~~~ 177 (231)
+|.|+++|+..+...
T Consensus 151 tG~GI~eLle~I~~l 165 (537)
T 3izy_P 151 TGENMMALAEATIAL 165 (537)
T ss_dssp SSCSSHHHHHHHHHH
T ss_pred CCCCchhHHHHHHHh
Confidence 999999998887654
No 178
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.15 E-value=1.3e-12 Score=107.84 Aligned_cols=77 Identities=19% Similarity=0.155 Sum_probs=55.7
Q ss_pred CCCCC-CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee----EEeeCCcEEE
Q 038053 2 SSGMG-ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT----TVLKDGQVVN 76 (231)
Q Consensus 2 ~~~~~-~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~ 76 (231)
++.|+ +..+|++++|++++| .+++|+|+||||||||+++|+|...+. .|.+........ ..+ .....+
T Consensus 60 s~~y~~~~~vL~~isl~i~~G--e~vaivG~sGsGKSTLl~ll~gl~~p~----~G~I~i~G~~i~~~~~~~~-r~~i~~ 132 (306)
T 3nh6_A 60 HFSYADGRETLQDVSFTVMPG--QTLALVGPSGAGKSTILRLLFRFYDIS----SGCIRIDGQDISQVTQASL-RSHIGV 132 (306)
T ss_dssp EEESSTTCEEEEEEEEEECTT--CEEEEESSSCHHHHHHHHHHTTSSCCS----EEEEEETTEETTSBCHHHH-HHTEEE
T ss_pred EEEcCCCCceeeeeeEEEcCC--CEEEEECCCCchHHHHHHHHHcCCCCC----CcEEEECCEEcccCCHHHH-hcceEE
Confidence 45674 578999999999999 999999999999999999999998743 333332211100 001 235778
Q ss_pred EEeCCCCcC
Q 038053 77 VIDTPGLFD 85 (231)
Q Consensus 77 l~Dtpg~~~ 85 (231)
+++.|.+++
T Consensus 133 v~Q~~~lf~ 141 (306)
T 3nh6_A 133 VPQDTVLFN 141 (306)
T ss_dssp ECSSCCCCS
T ss_pred EecCCccCc
Confidence 888888764
No 179
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.14 E-value=5.6e-12 Score=102.85 Aligned_cols=48 Identities=15% Similarity=0.081 Sum_probs=43.8
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcccc
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKA 51 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~ 51 (231)
++.|++..++++++|++++| .+++|+|+||||||||+++|+|...+..
T Consensus 28 ~~~y~~~~vL~~isl~i~~G--e~~~liG~NGsGKSTLlk~l~Gl~~p~~ 75 (279)
T 2ihy_A 28 GRMKQGKTILKKISWQIAKG--DKWILYGLNGAGKTTLLNILNAYEPATS 75 (279)
T ss_dssp EEEETTEEEEEEEEEEEETT--CEEEEECCTTSSHHHHHHHHTTSSCCSE
T ss_pred EEEECCEEEEEeeeEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCCCC
Confidence 56788888999999999999 9999999999999999999999987433
No 180
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.14 E-value=1.7e-10 Score=88.17 Aligned_cols=138 Identities=20% Similarity=0.195 Sum_probs=77.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
.+|+++|.+|||||||+|.+++.... ....+++.......... .+ ..+.++||||...... + .
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~~~~---~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~----~----~--- 86 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTKRFI---SEYDPNLEDTYSSEETV-DHQPVHLRVMDTADLDTPRN----C----E--- 86 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCC---SCCCTTCCEEEEEEEEE-TTEEEEEEEEECCC---CCC----T----H---
T ss_pred EEEEEECCCCCcHHHHHHHHHhCCCC---cccCCCccceeeEEEEE-CCEEEEEEEEECCCCCcchh----H----H---
Confidence 79999999999999999999987531 11111221111111222 32 4567899999764321 1 1
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH--------h----cCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------A----NGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSL 159 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~----~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~i 159 (231)
..+..+|++++|+|+++.-+..... . ....|++ .+.++.|.. ...+....+ +++.+
T Consensus 87 -~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~pii-lv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 164 (187)
T 3c5c_A 87 -RYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPAL-LLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEV 164 (187)
T ss_dssp -HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEE-EEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEC
T ss_pred -HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEE-EEEECcchhhcCccCHHHHHHHHHHcCCcEEEE
Confidence 1235679999999998532222211 1 1344443 333443321 012222222 67789
Q ss_pred hh-hhHhhHHHHHHHHHHHH
Q 038053 160 KE-YSKQEISKLMGQMQESY 178 (231)
Q Consensus 160 s~-~~~~~i~~l~~~i~~~~ 178 (231)
|+ +++.|+++++..+....
T Consensus 165 Sa~~~g~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 165 SACLDFEHVQHVFHEAVREA 184 (187)
T ss_dssp CSSSCSHHHHHHHHHHHHHH
T ss_pred eecCccccHHHHHHHHHHHH
Confidence 99 89999999988876643
No 181
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.14 E-value=1.3e-11 Score=101.19 Aligned_cols=69 Identities=14% Similarity=0.137 Sum_probs=53.3
Q ss_pred CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCC
Q 038053 7 ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDS 86 (231)
Q Consensus 7 ~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~ 86 (231)
...++++++|++++| .+++|+|+||||||||+++|+|...+.. |.+. + .+...++++.|.+++.
T Consensus 50 ~~~vl~~isl~i~~G--e~~~i~G~NGsGKSTLlk~l~Gl~~p~~----G~I~---------~-~g~i~~v~Q~~~l~~~ 113 (290)
T 2bbs_A 50 GTPVLKDINFKIERG--QLLAVAGSTGAGKTSLLMMIMGELEPSE----GKIK---------H-SGRISFCSQNSWIMPG 113 (290)
T ss_dssp CCCSEEEEEEEECTT--CEEEEEESTTSSHHHHHHHHTTSSCEEE----EEEE---------C-CSCEEEECSSCCCCSS
T ss_pred CceEEEeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCCCC----cEEE---------E-CCEEEEEeCCCccCcc
Confidence 467899999999999 9999999999999999999999987432 2222 1 4456778888877663
Q ss_pred CCCchH
Q 038053 87 SAGSEF 92 (231)
Q Consensus 87 ~~~~~~ 92 (231)
++.++
T Consensus 114 -tv~en 118 (290)
T 2bbs_A 114 -TIKEN 118 (290)
T ss_dssp -BHHHH
T ss_pred -cHHHH
Confidence 44333
No 182
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.14 E-value=1e-10 Score=90.93 Aligned_cols=139 Identities=12% Similarity=0.031 Sum_probs=79.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEEe-eCCcEEEEEeCCCCcCCCCCchHHHHHHHHH
Q 038053 23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKR 100 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~-~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~ 100 (231)
..+|+++|.+|+|||||+|.+++.... .....|...... .... .....+.++||||...... .
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-----------~ 92 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKDCFP----ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDN-----------V 92 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCC----SSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTT-----------T
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCC----CCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhH-----------H
Confidence 379999999999999999999987542 111112211111 1221 1234678999999654211 1
Q ss_pred HhhhcCCccEEEEEEECCCCCCHHHH-H--------hcCCCCcHHHHHHHHHhh---------------------HHHHH
Q 038053 101 IGLAKGGIHAVLVVFSVRSRFSQEEE-A--------ANGGQPYTDEFLAELKRG---------------------ATELR 150 (231)
Q Consensus 101 ~~~~~~~~~~il~vvd~~~~~~~~~~-~--------~~~~~~~~~~~~~~~~~~---------------------~~~l~ 150 (231)
....+..+|++++|+|+++..+.... . .....|++ .+.++.|.. ...+.
T Consensus 93 ~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 171 (205)
T 1gwn_A 93 RPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKML-LVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMA 171 (205)
T ss_dssp GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEE-EEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHH
T ss_pred HHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEE-EEEechhhccchhhhhhhcccccCCCCHHHHHHHH
Confidence 12345788999999999853332222 1 11223332 222332210 01222
Q ss_pred hhcc--chhhhhhh-hHhhHHHHHHHHHHH
Q 038053 151 DQQA--EVDSLKEY-SKQEISKLMGQMQES 177 (231)
Q Consensus 151 ~~~~--~i~~is~~-~~~~i~~l~~~i~~~ 177 (231)
...+ +++.+||+ ++.|+++++..+.+.
T Consensus 172 ~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~ 201 (205)
T 1gwn_A 172 KQIGAATYIECSALQSENSVRDIFHVATLA 201 (205)
T ss_dssp HHHTCSEEEECCTTTCHHHHHHHHHHHHHH
T ss_pred HHcCCCEEEEeeeccCCcCHHHHHHHHHHH
Confidence 2222 56778998 689999998887664
No 183
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.14 E-value=3.8e-10 Score=96.69 Aligned_cols=143 Identities=13% Similarity=0.150 Sum_probs=80.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCccccc----c---------CCCCcceeeeeeeEE----eeCCcEEEEEeCCCCcC
Q 038053 23 KRTVVLLGRTGNGKSATGNSILGRKAFKAS----A---------DSSGVTKTCEMKTTV----LKDGQVVNVIDTPGLFD 85 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~----~---------~~~~~t~~~~~~~~~----~~~~~~~~l~Dtpg~~~ 85 (231)
..+|+++|.+|+|||||+|+|+|....... . .....+......... ......+.++||||..+
T Consensus 8 ~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~~ 87 (403)
T 3sjy_A 8 EVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEV 87 (403)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCGG
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcHH
Confidence 379999999999999999999995431100 0 000000000000000 00226788999999543
Q ss_pred CCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCC-CHHHHH------hcCCCCcHHHHHHHHHhh--------HHHHH
Q 038053 86 SSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRF-SQEEEA------ANGGQPYTDEFLAELKRG--------ATELR 150 (231)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~--------~~~l~ 150 (231)
+.......+..+|++++|+|++++. ...... .....+++ .++|++|.. .+++.
T Consensus 88 -----------~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~ii-vviNK~Dl~~~~~~~~~~~~i~ 155 (403)
T 3sjy_A 88 -----------LMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLI-IVQNKVDVVSKEEALSQYRQIK 155 (403)
T ss_dssp -----------GHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEE-EEEECGGGSCHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEE-EEEECccccchHHHHHHHHHHH
Confidence 2222233346789999999998765 333322 12223333 233443310 02333
Q ss_pred hhc-------cchhhhhhhhHhhHHHHHHHHHHH
Q 038053 151 DQQ-------AEVDSLKEYSKQEISKLMGQMQES 177 (231)
Q Consensus 151 ~~~-------~~i~~is~~~~~~i~~l~~~i~~~ 177 (231)
+.+ .+++++|+++|.|+..|++.+...
T Consensus 156 ~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~ 189 (403)
T 3sjy_A 156 QFTKGTWAENVPIIPVSALHKINIDSLIEGIEEY 189 (403)
T ss_dssp HHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHh
Confidence 322 167889999999999988887653
No 184
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.14 E-value=4.3e-12 Score=102.60 Aligned_cols=77 Identities=16% Similarity=0.043 Sum_probs=54.1
Q ss_pred CCCCCC---cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eE--EeeCCcEE
Q 038053 2 SSGMGE---RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TT--VLKDGQVV 75 (231)
Q Consensus 2 ~~~~~~---~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~--~~~~~~~~ 75 (231)
++.|++ ..++++++|++++| .+++|+|+||||||||+++|+|...+ . |.+....... .. ........
T Consensus 24 ~~~y~~~~~~~vl~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~-~----G~I~i~g~~i~~~~~~~~~~~i~ 96 (260)
T 2ghi_A 24 NFSYPKQTNHRTLKSINFFIPSG--TTCALVGHTGSGKSTIAKLLYRFYDA-E----GDIKIGGKNVNKYNRNSIRSIIG 96 (260)
T ss_dssp EECCTTCCSSCSEEEEEEEECTT--CEEEEECSTTSSHHHHHHHHTTSSCC-E----EEEEETTEEGGGBCHHHHHTTEE
T ss_pred EEEeCCCCcCceeEeeEEEECCC--CEEEEECCCCCCHHHHHHHHhccCCC-C----eEEEECCEEhhhcCHHHHhccEE
Confidence 566765 46999999999999 99999999999999999999998763 2 2222211100 00 00124577
Q ss_pred EEEeCCCCcC
Q 038053 76 NVIDTPGLFD 85 (231)
Q Consensus 76 ~l~Dtpg~~~ 85 (231)
++++.|.+++
T Consensus 97 ~v~Q~~~l~~ 106 (260)
T 2ghi_A 97 IVPQDTILFN 106 (260)
T ss_dssp EECSSCCCCS
T ss_pred EEcCCCcccc
Confidence 8888887764
No 185
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.13 E-value=5.7e-11 Score=101.54 Aligned_cols=90 Identities=14% Similarity=0.101 Sum_probs=46.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEe--------------------eC---CcEEEEEeCC
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVL--------------------KD---GQVVNVIDTP 81 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~--------------------~~---~~~~~l~Dtp 81 (231)
+|+|+|.||+|||||+|+|+|... .. ...+++|.....+.... .. ...+.++|||
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~~-~~-~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtp 79 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVDV-EI-ANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA 79 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC-cc-cCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECC
Confidence 699999999999999999999873 22 24556666554443211 01 2468899999
Q ss_pred CCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCC
Q 038053 82 GLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSR 120 (231)
Q Consensus 82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~ 120 (231)
|+......... +...+...+..+|++++|+|+++.
T Consensus 80 G~~~~a~~~~~----l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 80 GLVPGAHEGRG----LGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp -------------------CCCSSTTCSEEEEEEETTCC
T ss_pred Ccccchhhhhh----HHHHHHHHHhcCCEEEEEEecccc
Confidence 98753221111 222223456789999999999853
No 186
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.13 E-value=9.5e-10 Score=94.44 Aligned_cols=141 Identities=12% Similarity=0.183 Sum_probs=84.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccc-cCCCCcceeeeeeeEEeeC----------------------CcEEEEEeC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKAS-ADSSGVTKTCEMKTTVLKD----------------------GQVVNVIDT 80 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~-~~~~~~t~~~~~~~~~~~~----------------------~~~~~l~Dt 80 (231)
.+|+++|..|+|||||++.|+|....... ....++|....+....+.. ...+.++||
T Consensus 11 ~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDt 90 (410)
T 1kk1_A 11 VNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDA 90 (410)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEEC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEEC
Confidence 78999999999999999999986431110 1234555543332221100 157889999
Q ss_pred CCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCC-CHHHHH------hcCCCCcHHHHHHHHHhh--------
Q 038053 81 PGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRF-SQEEEA------ANGGQPYTDEFLAELKRG-------- 145 (231)
Q Consensus 81 pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~-------- 145 (231)
||.. .+...+......+|.+++|+|+++++ ..+... .....+++ .++|++|..
T Consensus 91 PGh~-----------~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~ii-vviNK~Dl~~~~~~~~~ 158 (410)
T 1kk1_A 91 PGHE-----------ALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNII-IAQNKIELVDKEKALEN 158 (410)
T ss_dssp SSHH-----------HHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEE-EEEECGGGSCHHHHHHH
T ss_pred CChH-----------HHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEE-EEEECccCCCHHHHHHH
Confidence 9943 23333344456789999999998765 443332 11222332 233443311
Q ss_pred HHHHHhhc-------cchhhhhhhhHhhHHHHHHHHHH
Q 038053 146 ATELRDQQ-------AEVDSLKEYSKQEISKLMGQMQE 176 (231)
Q Consensus 146 ~~~l~~~~-------~~i~~is~~~~~~i~~l~~~i~~ 176 (231)
.+++.+.+ -+++++|+++|.|+..|++.+..
T Consensus 159 ~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~ 196 (410)
T 1kk1_A 159 YRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIED 196 (410)
T ss_dssp HHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 02233322 16788999999999988887765
No 187
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.13 E-value=9e-12 Score=101.37 Aligned_cols=46 Identities=15% Similarity=0.084 Sum_probs=41.7
Q ss_pred CCCCCC-cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053 2 SSGMGE-RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF 49 (231)
Q Consensus 2 ~~~~~~-~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~ 49 (231)
++.|++ ..++++++|++++| .+++|+|+||||||||+++|+|...+
T Consensus 14 s~~y~~~~~~L~~isl~i~~G--e~~~iiGpnGsGKSTLl~~l~Gl~~p 60 (275)
T 3gfo_A 14 NYNYSDGTHALKGINMNIKRG--EVTAILGGNGVGKSTLFQNFNGILKP 60 (275)
T ss_dssp EEECTTSCEEEEEEEEEEETT--SEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEECCCCeEEEeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 567864 45999999999999 99999999999999999999999874
No 188
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.13 E-value=8.8e-11 Score=99.25 Aligned_cols=90 Identities=22% Similarity=0.234 Sum_probs=61.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEee--------------------CCcEEEEEeCCCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLK--------------------DGQVVNVIDTPGL 83 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--------------------~~~~~~l~Dtpg~ 83 (231)
.+|+|+|.||+|||||+|+|++.... . ...+.+|..+..+..... .+..+.++||||+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~-v-~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANAL-A-ANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTT-C-SSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCc-c-cCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 47999999999999999999987521 1 234445554444333210 2346889999999
Q ss_pred cCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCC
Q 038053 84 FDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRS 119 (231)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~ 119 (231)
.........++..++..+ ..+|++++|+|+.+
T Consensus 80 ~~~a~~~~~lg~~fl~~i----r~ad~ii~VvD~~~ 111 (368)
T 2dby_A 80 VKGAHKGEGLGNQFLAHI----REVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCCSSSCTTHHHHHHH----HTCSEEEEEEECCC
T ss_pred cccccccchHHHHHHHHH----HhCCEEEEEEECCC
Confidence 876544444444444443 56799999999974
No 189
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.73 E-value=5.7e-12 Score=97.69 Aligned_cols=139 Identities=13% Similarity=0.050 Sum_probs=77.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEe-eCCcEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
..+|+++|.+|+|||||+|.+++..... ...+++.......... .....+.++||||..... ...
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----------~~~ 95 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYTTNAFPG---EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYD-----------RLR 95 (204)
Confidence 4899999999999999999999765311 1111111111111111 023345589999965421 112
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH------h---cCCCCcHHHHHHHHHhhH------------------H---HHHh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA------A---NGGQPYTDEFLAELKRGA------------------T---ELRD 151 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~------~---~~~~~~~~~~~~~~~~~~------------------~---~l~~ 151 (231)
...+..+|++++|+|+++..+..+.. . ....|+ +.+.++.|... . .+..
T Consensus 96 ~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~pi-ilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 174 (204)
T 3th5_A 96 PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK 174 (204)
Confidence 22346789999999987543332221 1 112333 35566655211 0 0001
Q ss_pred hcc--chhhhhhhhHhhHHHHHHHHHH
Q 038053 152 QQA--EVDSLKEYSKQEISKLMGQMQE 176 (231)
Q Consensus 152 ~~~--~i~~is~~~~~~i~~l~~~i~~ 176 (231)
..+ +++.+||++|.|+++++..+.+
T Consensus 175 ~~~~~~~~~vSA~~g~gi~~l~~~l~~ 201 (204)
T 3th5_A 175 EIGAVKYLECSALTQRGLKTVFDEAIR 201 (204)
Confidence 111 5677899999999988877654
No 190
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.12 E-value=1.8e-10 Score=88.25 Aligned_cols=138 Identities=13% Similarity=0.086 Sum_probs=79.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
.+|+++|.+|+|||||+|.+++.... ....+++.......... .+ ..+.++||||...... ..
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~~~~---~~~~~t~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~-----------~~ 83 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYANDAFP---EEYVPTVFDHYAVSVTV-GGKQYLLGLYDTAGQEDYDR-----------LR 83 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSCC---CSCCCSSCCCEEEEEES-SSCEEEEEEECCCCSSSSTT-----------TG
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC---CCCCCcccceeEEEEEE-CCEEEEEEEEECCCCcchhH-----------HH
Confidence 69999999999999999999987431 11122221111112222 33 4678899999765321 11
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHH--H-------hcCCCCcHHHHHHHHHhh---------------------HHHHHh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEE--A-------ANGGQPYTDEFLAELKRG---------------------ATELRD 151 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~--~-------~~~~~~~~~~~~~~~~~~---------------------~~~l~~ 151 (231)
...+..+|++++|+|+++..+.... . .....|++ .+.++.|.. ...+..
T Consensus 84 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 162 (194)
T 2atx_A 84 PLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFL-LIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAK 162 (194)
T ss_dssp GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEE-EEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHH
T ss_pred HHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE-EEEEChhhcccccchhhcccccCcccCHHHHHHHHH
Confidence 2345788999999999854221111 1 11133333 222222210 011211
Q ss_pred hcc--chhhhhhhhHhhHHHHHHHHHHH
Q 038053 152 QQA--EVDSLKEYSKQEISKLMGQMQES 177 (231)
Q Consensus 152 ~~~--~i~~is~~~~~~i~~l~~~i~~~ 177 (231)
..+ +++.+|+++|.|+++++..+...
T Consensus 163 ~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 190 (194)
T 2atx_A 163 EIGACCYVECSALTQKGLKTVFDEAIIA 190 (194)
T ss_dssp HHTCSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred HcCCcEEEEeeCCCCCCHHHHHHHHHHH
Confidence 122 56778999999999998887653
No 191
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.12 E-value=8.1e-10 Score=94.50 Aligned_cols=92 Identities=16% Similarity=0.165 Sum_probs=61.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccc--------------cCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKAS--------------ADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAG 89 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~--------------~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~ 89 (231)
.+|+++|.+|+|||||++.|++....... ....+.|.......... .+..+.++||||..+
T Consensus 4 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~~~iiDtpG~~~---- 78 (397)
T 1d2e_A 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYST-AARHYAHTDCPGHAD---- 78 (397)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEEC-SSCEEEEEECSSHHH----
T ss_pred EEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEecc-CCeEEEEEECCChHH----
Confidence 78999999999999999999974210000 01234454433322333 567899999999643
Q ss_pred chHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH
Q 038053 90 SEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA 127 (231)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~ 127 (231)
+.......+..+|.+++|+|++++...+...
T Consensus 79 -------f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e 109 (397)
T 1d2e_A 79 -------YVKNMITGTAPLDGCILVVAANDGPMPQTRE 109 (397)
T ss_dssp -------HHHHHHHTSSCCSEEEEEEETTTCSCHHHHH
T ss_pred -------HHHHHHhhHhhCCEEEEEEECCCCCCHHHHH
Confidence 3333444567899999999998776665443
No 192
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.12 E-value=2.5e-10 Score=89.33 Aligned_cols=140 Identities=12% Similarity=0.013 Sum_probs=81.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEEe-eCCcEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~-~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
.+|+|+|.+|||||||+|.+++.... .....|...... .... .....+.++||||...... ..
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-----------~~ 92 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKDCYP----ETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDN-----------VR 92 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC----SSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTT-----------TG
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCC----CCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHH-----------HH
Confidence 79999999999999999999887542 111112111111 1111 1234678999999654211 12
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHH-H--------hcCCCCcHHHHHHHHHhh---------------------HHHHHh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEE-A--------ANGGQPYTDEFLAELKRG---------------------ATELRD 151 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~-~--------~~~~~~~~~~~~~~~~~~---------------------~~~l~~ 151 (231)
...+..+|++++|+|+++..+.... . .....|++ .+.++.|.. ...+..
T Consensus 93 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 171 (214)
T 3q3j_B 93 PLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVL-LIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAK 171 (214)
T ss_dssp GGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEE-EEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHH
T ss_pred HHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEE-EEEEChhhccchhhhhhhcccccCccCHHHHHHHHH
Confidence 2345788999999999854433331 1 11223333 222332210 012222
Q ss_pred hcc--chhhhhhhhHhh-HHHHHHHHHHHHH
Q 038053 152 QQA--EVDSLKEYSKQE-ISKLMGQMQESYE 179 (231)
Q Consensus 152 ~~~--~i~~is~~~~~~-i~~l~~~i~~~~~ 179 (231)
..+ +++.+||+++.| +++++..+.....
T Consensus 172 ~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~ 202 (214)
T 3q3j_B 172 QLGAEIYLEGSAFTSEKSIHSIFRTASMLCL 202 (214)
T ss_dssp HHTCSEEEECCTTTCHHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEeccCCCcccHHHHHHHHHHHHh
Confidence 222 567789999998 9999888877543
No 193
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.11 E-value=5.7e-11 Score=104.17 Aligned_cols=86 Identities=17% Similarity=0.212 Sum_probs=58.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCcccc-----------------------------ccCCCCcceeeeeeeEEeeCCc
Q 038053 23 KRTVVLLGRTGNGKSATGNSILGRKAFKA-----------------------------SADSSGVTKTCEMKTTVLKDGQ 73 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~-----------------------------~~~~~~~t~~~~~~~~~~~~~~ 73 (231)
..+|+++|.+|+|||||+|.|++...... .....++|.+........ .+.
T Consensus 33 ~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~ 111 (483)
T 3p26_A 33 HLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-HRA 111 (483)
T ss_dssp EEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEEC-SSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEec-CCc
Confidence 37999999999999999999976521100 011235565555444444 678
Q ss_pred EEEEEeCCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCC
Q 038053 74 VVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSR 120 (231)
Q Consensus 74 ~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~ 120 (231)
.+.++||||..+ +.......+..+|++++|+|++++
T Consensus 112 ~~~iiDTPG~~~-----------f~~~~~~~~~~aD~~llVvDa~~g 147 (483)
T 3p26_A 112 NFTIVDAPGHRD-----------FVPNAIMGISQADMAILCVDCSTN 147 (483)
T ss_dssp EEEEECCCCCGG-----------GHHHHHHHHTTCSEEEEEEECCC-
T ss_pred eEEEEECCCcHH-----------HHHHHHHhhhhCCEEEEEEECCCC
Confidence 899999999854 222233344678999999999864
No 194
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.11 E-value=4.2e-10 Score=88.09 Aligned_cols=142 Identities=18% Similarity=0.156 Sum_probs=78.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCc--EEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
.+|+|+|.+|||||||+|.++|...... ...++++.+........ .+. .+.++||+|... . .... .
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~~~~~~-~~~~~~g~d~~~~~i~~-~~~~~~l~~~Dt~g~~~-----~---~~~l--~ 105 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGVHDSMD-SDCEVLGEDTYERTLMV-DGESATIILLDMWENKG-----E---NEWL--H 105 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCTTC-CC---CCTTEEEEEEEE-TTEEEEEEEECCTTTTH-----H---HHHH--H
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCC-CcCCccceeeEEEEEEE-CCeeeEEEEeecCCCcc-----h---hhhH--H
Confidence 6899999999999999999998643211 11112222211222222 443 456789988542 0 1111 2
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH------h----cCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA------A----NGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKE 161 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~------~----~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~ 161 (231)
...+..++++++|+|.++.-+..... . ....|++ .+.++.|.. ...+....+ +++.+||
T Consensus 106 ~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~pii-lVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SA 184 (211)
T 2g3y_A 106 DHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII-LVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSA 184 (211)
T ss_dssp HCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEE-EEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBT
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEE-EEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeC
Confidence 23346789999999998532211111 1 1233433 333443311 011111122 5677899
Q ss_pred hhHhhHHHHHHHHHHHH
Q 038053 162 YSKQEISKLMGQMQESY 178 (231)
Q Consensus 162 ~~~~~i~~l~~~i~~~~ 178 (231)
++|.|+++++..+....
T Consensus 185 k~g~~v~elf~~l~~~i 201 (211)
T 2g3y_A 185 AVQHNVKELFEGIVRQV 201 (211)
T ss_dssp TTTBSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999998887643
No 195
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.10 E-value=7.7e-10 Score=89.78 Aligned_cols=102 Identities=20% Similarity=0.248 Sum_probs=52.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccC------CCCcceeeeeeeEEee--CCcEEEEEeCCCCcCCCCC---chH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASAD------SSGVTKTCEMKTTVLK--DGQVVNVIDTPGLFDSSAG---SEF 92 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~------~~~~t~~~~~~~~~~~--~~~~~~l~Dtpg~~~~~~~---~~~ 92 (231)
++++|+|+||||||||+|+|+|...+..|.. .+..+........... -...+.++|+||+...... ...
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 7899999999999999999999876543311 0111111111111110 1235789999998653321 112
Q ss_pred HHHHH----HHHHhhh----------cCCccEEEEEEECC-CCCCHHH
Q 038053 93 VGKEI----VKRIGLA----------KGGIHAVLVVFSVR-SRFSQEE 125 (231)
Q Consensus 93 ~~~~~----~~~~~~~----------~~~~~~il~vvd~~-~~~~~~~ 125 (231)
+...+ ....... ..++++.++++|.. .+++..+
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD 130 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD 130 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH
Confidence 22222 1222111 24568899999975 3344333
No 196
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.10 E-value=1.1e-10 Score=89.84 Aligned_cols=143 Identities=14% Similarity=0.158 Sum_probs=77.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053 23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG 102 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~ 102 (231)
..+|+++|.+|||||||+|.+++.......... ..+...............+.++||||........-. . .
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~----~----~ 90 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFL-ESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFD----Y----E 90 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGC-CCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCC----H----H
T ss_pred ceEEEEECCCCCCHHHHHHHHHhcCCCcceeee-ccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhh----c----c
Confidence 479999999999999999999997543211111 111111111111113467889999997542211100 0 1
Q ss_pred hhcCCccEEEEEEECCCCCCHHHHH----------hcCCCCcHHHHHHHHHh-----------h-----HHHHHh----h
Q 038053 103 LAKGGIHAVLVVFSVRSRFSQEEEA----------ANGGQPYTDEFLAELKR-----------G-----ATELRD----Q 152 (231)
Q Consensus 103 ~~~~~~~~il~vvd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~-----------~-----~~~l~~----~ 152 (231)
..+..+|++++|+|+++.+...... .....|++ .+.++.|. . ...+.. .
T Consensus 91 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 169 (196)
T 3llu_A 91 MIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFE-VFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEK 169 (196)
T ss_dssp HHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEE-EEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred cccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEE-EEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhc
Confidence 1224579999999998653222111 12233333 22233320 0 012222 1
Q ss_pred cc-chhhhhhhhHhhHHHHHHHHHH
Q 038053 153 QA-EVDSLKEYSKQEISKLMGQMQE 176 (231)
Q Consensus 153 ~~-~i~~is~~~~~~i~~l~~~i~~ 176 (231)
.+ +++.+||++ .|+++++..+..
T Consensus 170 ~~~~~~e~Sa~~-~~v~~~f~~l~~ 193 (196)
T 3llu_A 170 LHLSFYLTSIYD-HSIFEAFSKVVQ 193 (196)
T ss_dssp SCEEEEEECTTS-THHHHHHHHHHH
T ss_pred CCcceEEEEech-hhHHHHHHHHHH
Confidence 11 567789999 999998887765
No 197
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.09 E-value=1.1e-11 Score=99.55 Aligned_cols=43 Identities=21% Similarity=0.295 Sum_probs=40.8
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGR 46 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~ 46 (231)
++.|++..++++++|++++| .+++|+|+||||||||+++|+|.
T Consensus 10 ~~~y~~~~vl~~vsl~i~~G--e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 10 WASIDGETILKGVNLVVPKG--EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEETTEEEEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEECCEEEEeceEEEEcCC--CEEEEECCCCCCHHHHHHHHhCC
Confidence 56788888999999999999 99999999999999999999997
No 198
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.09 E-value=1.1e-09 Score=92.41 Aligned_cols=106 Identities=19% Similarity=0.237 Sum_probs=51.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCCccccccCC-----CCcceeeeeeeEEe-eCC--cEEEEEeCCCCcCCC-----
Q 038053 21 NGKRTVVLLGRTGNGKSATGNSILGRKAFKASADS-----SGVTKTCEMKTTVL-KDG--QVVNVIDTPGLFDSS----- 87 (231)
Q Consensus 21 g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~-----~~~t~~~~~~~~~~-~~~--~~~~l~Dtpg~~~~~----- 87 (231)
+....|+|+|++|+|||||+|+|++...+..+... ...|.......... ..+ ..+.++||||+.+..
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 33467999999999999999999988654332110 01222211111111 122 257899999995432
Q ss_pred --CCchHHHHHHHHHHhhhc---------CCccEEEEEEEC-CCCCCHHHH
Q 038053 88 --AGSEFVGKEIVKRIGLAK---------GGIHAVLVVFSV-RSRFSQEEE 126 (231)
Q Consensus 88 --~~~~~~~~~~~~~~~~~~---------~~~~~il~vvd~-~~~~~~~~~ 126 (231)
.....+...+..++.... .++|+++++++. ...+...+.
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~ 165 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV 165 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHH
Confidence 112222222223333221 245788888886 456776664
No 199
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.09 E-value=5.2e-10 Score=95.95 Aligned_cols=92 Identities=15% Similarity=0.167 Sum_probs=60.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccc------c---c------CCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKA------S---A------DSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSA 88 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~------~---~------~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~ 88 (231)
.+|+++|.+|+|||||+|.|++...... . . ...++|.+........ .+..+.++||||..+.
T Consensus 12 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~~~iiDtpG~~~f-- 88 (405)
T 2c78_A 12 VNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET-AKRHYSHVDCPGHADY-- 88 (405)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC-SSCEEEEEECCCSGGG--
T ss_pred EEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEecc-CCeEEEEEECCChHHH--
Confidence 7999999999999999999998411000 0 0 0234444433333333 5678899999997641
Q ss_pred CchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH
Q 038053 89 GSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA 127 (231)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~ 127 (231)
.......+..+|.+++|+|++++.......
T Consensus 89 ---------~~~~~~~~~~aD~~ilVvda~~g~~~qt~~ 118 (405)
T 2c78_A 89 ---------IKNMITGAAQMDGAILVVSAADGPMPQTRE 118 (405)
T ss_dssp ---------HHHHHHHHTTCSSEEEEEETTTCCCHHHHH
T ss_pred ---------HHHHHHHHHHCCEEEEEEECCCCCcHHHHH
Confidence 122223346889999999998777665543
No 200
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.08 E-value=3.4e-10 Score=87.20 Aligned_cols=142 Identities=17% Similarity=0.111 Sum_probs=79.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCc--EEEEEeCCCCcCCCCCchHHHHHHHHH
Q 038053 23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAGSEFVGKEIVKR 100 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~Dtpg~~~~~~~~~~~~~~~~~~ 100 (231)
..+|+|+|.+|||||||+|.+++...... ..++++.+........ .+. .+.+.||||..... . .+...
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~---~----~~~~~ 92 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFGGLQGDSA--HEPENPEDTYERRIMV-DKEEVTLVVYDIWEQGDAG---G----WLRDH 92 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTCCEECCGG--GTTTSCTTEEEEEEEE-TTEEEEEEEECCCCCSGGG---H----HHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHhccCCcc--CCCCcccceEEEEEEE-CCEEEEEEEEecCCCccch---h----hhHHH
Confidence 47999999999999999999987543211 1222232222222222 333 45678999975411 1 11111
Q ss_pred HhhhcCCccEEEEEEECCCCCCHHHHH--------hc--CCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhh
Q 038053 101 IGLAKGGIHAVLVVFSVRSRFSQEEEA--------AN--GGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLK 160 (231)
Q Consensus 101 ~~~~~~~~~~il~vvd~~~~~~~~~~~--------~~--~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is 160 (231)
.+..+|++++|+|+++..+..... .. ...|++ .+.++.|.. ...+....+ +++.+|
T Consensus 93 ---~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~S 168 (195)
T 3cbq_A 93 ---CLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVI-LVGNKSDLARSREVSLEEGRHLAGTLSCKHIETS 168 (195)
T ss_dssp ---HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEE-EEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEB
T ss_pred ---hhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEeechhccccCCcCHHHHHHHHHHhCCEEEEEc
Confidence 224579999999998532211111 11 233433 233333210 012222222 567789
Q ss_pred hhhHhhHHHHHHHHHHHH
Q 038053 161 EYSKQEISKLMGQMQESY 178 (231)
Q Consensus 161 ~~~~~~i~~l~~~i~~~~ 178 (231)
++++.|+++++..+....
T Consensus 169 a~~~~~v~~lf~~l~~~i 186 (195)
T 3cbq_A 169 AALHHNTRELFEGAVRQI 186 (195)
T ss_dssp TTTTBSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999988887643
No 201
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.07 E-value=1.9e-10 Score=95.36 Aligned_cols=138 Identities=14% Similarity=0.106 Sum_probs=81.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcE--EEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQV--VNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
.+|+++|.+|+|||||+|.+++.... ....+++.......... .+.. +.++||||..... ...
T Consensus 156 ~~i~i~G~~~~GKssli~~~~~~~~~---~~~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~-----------~~~ 220 (332)
T 2wkq_A 156 IKCVVVGDGAVGKTCLLISYTTNAFP---GEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGLEDYD-----------RLR 220 (332)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCC---CSCCCCSEEEEEEEEEE-TTEEEEEEEEEECCCGGGT-----------TTG
T ss_pred eEEEEECCCCCChHHHHHHHHhCCCC---cccCCcccceeEEEEEE-CCEEEEEEEEeCCCchhhh-----------HHH
Confidence 79999999999999999999976431 12222232222222222 4444 4499999975422 112
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhhH---------------------HHHHh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRGA---------------------TELRD 151 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~---------------------~~l~~ 151 (231)
...+..+|++++|+|+++..+..+.. .....|++ .+.++.|... ..+..
T Consensus 221 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 299 (332)
T 2wkq_A 221 PLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPII-LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK 299 (332)
T ss_dssp GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEE-EEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHH
T ss_pred HHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEE-EEEEchhcccccchhhhccccccccccHHHHHHHHH
Confidence 23457889999999998543332211 12234443 2333333100 11111
Q ss_pred hcc--chhhhhhhhHhhHHHHHHHHHHH
Q 038053 152 QQA--EVDSLKEYSKQEISKLMGQMQES 177 (231)
Q Consensus 152 ~~~--~i~~is~~~~~~i~~l~~~i~~~ 177 (231)
..+ +++.+|+++|.|+++++..+...
T Consensus 300 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 327 (332)
T 2wkq_A 300 EIGAVKYLECSALTQRGLKTVFDEAIRA 327 (332)
T ss_dssp HTTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HcCCcEEEEecCCCCcCHHHHHHHHHHH
Confidence 111 56779999999999999887664
No 202
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.07 E-value=7e-12 Score=98.43 Aligned_cols=142 Identities=16% Similarity=0.100 Sum_probs=81.7
Q ss_pred ceEEEEEcCCCCCHHHHHHH-HhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 23 KRTVVLLGRTGNGKSATGNS-ILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~-l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
..+|+++|.+|||||||+|. +.|...... ....+.+.......... ....+.++||||........
T Consensus 15 ~~ki~v~G~~~~GKSsli~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~----------- 81 (221)
T 3gj0_A 15 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKY-VATLGVEVHPLVFHTNR-GPIKFNVWDTAGQEKFGGLR----------- 81 (221)
T ss_dssp EEEEEEEECTTSSHHHHHTTBHHHHHTCEE-ETTTTEEEEEEEEEETT-EEEEEEEEEECSGGGTSCCC-----------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCC-CCccceeEEEEEEEECC-EEEEEEEEeCCChHHHhHHH-----------
Confidence 37999999999999999999 444433222 13334444332222211 23567899999965432111
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH--------hcCCCCcHHHHHHHHHhhH----H---HHHh-hccchhhhhhhhHh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------ANGGQPYTDEFLAELKRGA----T---ELRD-QQAEVDSLKEYSKQ 165 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~----~---~l~~-~~~~i~~is~~~~~ 165 (231)
...+..+|++++|+|+++..+..... .....|++ .+.++.|... . .+.. .--+++.+|++++.
T Consensus 82 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 160 (221)
T 3gj0_A 82 DGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIV-LCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNY 160 (221)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEE-EEEECTTSSSCSSCGGGCCHHHHHTCEEEECBGGGTB
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEE-EEEECCccccccccHHHHHHHHHcCCEEEEEeCCCCC
Confidence 11235789999999998533222211 11233433 3344443110 0 1111 11256778999999
Q ss_pred hHHHHHHHHHHHH
Q 038053 166 EISKLMGQMQESY 178 (231)
Q Consensus 166 ~i~~l~~~i~~~~ 178 (231)
|+++++..+....
T Consensus 161 gi~~l~~~l~~~l 173 (221)
T 3gj0_A 161 NFEKPFLWLARKL 173 (221)
T ss_dssp TTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999998887754
No 203
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.06 E-value=4e-10 Score=85.87 Aligned_cols=143 Identities=15% Similarity=0.143 Sum_probs=71.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEe----eCCcEEEEEeCCCCcCCCCCchHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVL----KDGQVVNVIDTPGLFDSSAGSEFVGKEIVK 99 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~ 99 (231)
.+|+|+|++|||||||+|.+++......+...+....+........ .....+.+.||||...... +..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~ 74 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYS--------THP 74 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHT--------TSH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHH--------hhH
Confidence 6899999999999999999999642111111111112111111110 1345678999999642110 111
Q ss_pred HHhhhcCCccEEEEEEECCCCCCHH-HHH--------hcCCCCcHHHHHHHHHhhH------------HHHHhhcc-c--
Q 038053 100 RIGLAKGGIHAVLVVFSVRSRFSQE-EEA--------ANGGQPYTDEFLAELKRGA------------TELRDQQA-E-- 155 (231)
Q Consensus 100 ~~~~~~~~~~~il~vvd~~~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~------------~~l~~~~~-~-- 155 (231)
..+..++++++|+|++++.+.. ... .....|++ .+.++.|... ..+....+ +
T Consensus 75 ---~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (184)
T 2zej_A 75 ---HFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVI-LVGTHLDVSDEKQRKACMSKITKELLNKRGFPAI 150 (184)
T ss_dssp ---HHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEE-EEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEE
T ss_pred ---HHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEE-EEEECCCcccchhhHHHHHHHHHHHHHhcCCcch
Confidence 1123468889999997543211 111 11233333 2223332110 11211112 2
Q ss_pred --hhhhhhhhHh-hHHHHHHHHHHHH
Q 038053 156 --VDSLKEYSKQ-EISKLMGQMQESY 178 (231)
Q Consensus 156 --i~~is~~~~~-~i~~l~~~i~~~~ 178 (231)
++.+||+++. ++..++..+.+.+
T Consensus 151 ~~~~~~Sa~~~~~~~~~l~~~i~~~~ 176 (184)
T 2zej_A 151 RDYHFVNATEESDALAKLRKTIINES 176 (184)
T ss_dssp EEEEECCTTSCCHHHHHHHHHHHHHH
T ss_pred hheEEEecccCchhHHHHHHHHHHHH
Confidence 6678999995 8888888776643
No 204
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.05 E-value=1.6e-11 Score=98.57 Aligned_cols=75 Identities=13% Similarity=0.022 Sum_probs=53.1
Q ss_pred ccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee----EEeeCCcEEEEEeCCCCc
Q 038053 9 VIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT----TVLKDGQVVNVIDTPGLF 84 (231)
Q Consensus 9 ~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~l~Dtpg~~ 84 (231)
.++++++|++++| .+++|+|+||||||||+++|+|...+ . |.+........ ... .....++++.|.++
T Consensus 14 ~vl~~vsl~i~~G--e~~~liG~NGsGKSTLlk~l~Gl~~p----~-G~i~~~g~~~~~~~~~~~-~~~i~~v~q~~~~~ 85 (249)
T 2qi9_C 14 TRLGPLSGEVRAG--EILHLVGPNGAGKSTLLARMAGMTSG----K-GSIQFAGQPLEAWSATKL-ALHRAYLSQQQTPP 85 (249)
T ss_dssp TTEEEEEEEEETT--CEEEEECCTTSSHHHHHHHHTTSSCC----E-EEEEETTEEGGGSCHHHH-HHHEEEECSCCCCC
T ss_pred EEEeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCC----C-eEEEECCEECCcCCHHHH-hceEEEECCCCccC
Confidence 6899999999999 99999999999999999999999873 3 33332211100 000 23467888888877
Q ss_pred CCCCCch
Q 038053 85 DSSAGSE 91 (231)
Q Consensus 85 ~~~~~~~ 91 (231)
+..++.+
T Consensus 86 ~~~tv~e 92 (249)
T 2qi9_C 86 FATPVWH 92 (249)
T ss_dssp TTCBHHH
T ss_pred CCCcHHH
Confidence 6544433
No 205
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.05 E-value=3.8e-10 Score=92.20 Aligned_cols=62 Identities=23% Similarity=0.356 Sum_probs=39.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCc
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGS 90 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~ 90 (231)
.+++++|.||+|||||+|+|+|.....++ ..+++|+..+.. . .+..+.++||||+.......
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~~~~~~-~~~g~T~~~~~~--~--~~~~~~l~DtpG~~~~~~~~ 182 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKNIAKTG-DRPGITTSQQWV--K--VGKELELLDTPGILWPKFED 182 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCC-------------CCE--E--ETTTEEEEECCCCCCSCCCC
T ss_pred ceEEEEecCCCchHHHHHHHhcCceeecC-CCCCeeeeeEEE--E--eCCCEEEEECcCcCCCCCCC
Confidence 78999999999999999999998865553 456677655421 1 24568899999998755433
No 206
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.04 E-value=1.5e-11 Score=104.60 Aligned_cols=79 Identities=22% Similarity=0.213 Sum_probs=54.8
Q ss_pred CCCC--CCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcccccc-CCCCcceeeeeeeEEeeCCcEEEEE
Q 038053 2 SSGM--GERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASA-DSSGVTKTCEMKTTVLKDGQVVNVI 78 (231)
Q Consensus 2 ~~~~--~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~ 78 (231)
++.| ++..++++++|++++| ..++|+|+||||||||+++|+|... ..|. ...+..... ...... .....+++
T Consensus 26 ~~~y~~~~~~~L~~vsl~i~~G--e~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~-~~~~~~-rr~ig~v~ 100 (390)
T 3gd7_A 26 TAKYTEGGNAILENISFSISPG--QRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDS-ITLEQW-RKAFGVIP 100 (390)
T ss_dssp EEESSSSSCCSEEEEEEEECTT--CEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTS-SCHHHH-HHTEEEES
T ss_pred EEEecCCCeEEeeceeEEEcCC--CEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCc-CChHHH-hCCEEEEc
Confidence 5678 6788999999999999 9999999999999999999999875 3321 111111000 000000 23467888
Q ss_pred eCCCCcC
Q 038053 79 DTPGLFD 85 (231)
Q Consensus 79 Dtpg~~~ 85 (231)
|.|.+++
T Consensus 101 Q~~~lf~ 107 (390)
T 3gd7_A 101 QKVFIFS 107 (390)
T ss_dssp CCCCCCS
T ss_pred CCcccCc
Confidence 8888775
No 207
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.03 E-value=1.1e-10 Score=91.81 Aligned_cols=139 Identities=14% Similarity=0.072 Sum_probs=76.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcce--eeeeeeEEee-CCcEEEEEeCCCCcCCCCCchHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTK--TCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKR 100 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~--~~~~~~~~~~-~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~ 100 (231)
.+|+|+|.+|+|||||++.++...-. .....|. +......... ....+.+.||+|...... +
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~~~f~----~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~--------l--- 78 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMYDSFD----NTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRS--------L--- 78 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC--------------CEEEEEECSSCEEEEEEECCSCTTTCGG--------G---
T ss_pred EEEEEECcCCcCHHHHHHHHHhCCCC----CCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhh--------H---
Confidence 68999999999999999998865421 1111122 1111112220 223567899999754221 1
Q ss_pred HhhhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHh---------hHHHHHhhcc-chhhhhh
Q 038053 101 IGLAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKR---------GATELRDQQA-EVDSLKE 161 (231)
Q Consensus 101 ~~~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~---------~~~~l~~~~~-~i~~is~ 161 (231)
....+..++++++|+|.++.-+-.... .....|++ .+.++.|. ++..+....+ +.+.+||
T Consensus 79 ~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~pii-lVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SA 157 (216)
T 4dkx_A 79 IPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIM-LVGNKTDLADKRQVSIEEGERKAKELNVMFIETSA 157 (216)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEE-EEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBT
T ss_pred HHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEE-EEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeC
Confidence 122346789999999998532222211 11222222 22222221 0112222222 5566899
Q ss_pred hhHhhHHHHHHHHHHHH
Q 038053 162 YSKQEISKLMGQMQESY 178 (231)
Q Consensus 162 ~~~~~i~~l~~~i~~~~ 178 (231)
++|.|+++++..+....
T Consensus 158 ktg~nV~e~F~~i~~~i 174 (216)
T 4dkx_A 158 KAGYNVKQLFRRVAAAL 174 (216)
T ss_dssp TTTBSHHHHHHHHHHHC
T ss_pred CCCcCHHHHHHHHHHHH
Confidence 99999999988876643
No 208
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.03 E-value=9e-10 Score=100.02 Aligned_cols=98 Identities=27% Similarity=0.311 Sum_probs=62.6
Q ss_pred cCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcccc--c-c-------C------CCCcceeeeeeeEEeeCCcEEEEEe
Q 038053 16 PTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKA--S-A-------D------SSGVTKTCEMKTTVLKDGQVVNVID 79 (231)
Q Consensus 16 ~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~--~-~-------~------~~~~t~~~~~~~~~~~~~~~~~l~D 79 (231)
+.+.++ .+|+|+|++|+|||||++.|++...... + . + ..++|...+.....+ ....+.++|
T Consensus 4 ~~~~~~--~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~-~~~~~nliD 80 (665)
T 2dy1_A 4 EGGAMI--RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF-RGHRVFLLD 80 (665)
T ss_dssp --CCCE--EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEE-TTEEEEEEE
T ss_pred CccCCC--cEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEee-CCEEEEEEe
Confidence 456677 8999999999999999999995432100 0 0 0 113344333334444 677889999
Q ss_pred CCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH
Q 038053 80 TPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA 127 (231)
Q Consensus 80 tpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~ 127 (231)
|||..+. ...+.. .+..+|.+++|+|+++++......
T Consensus 81 TpG~~~f-------~~~~~~----~l~~ad~~ilVvD~~~g~~~qt~~ 117 (665)
T 2dy1_A 81 APGYGDF-------VGEIRG----ALEAADAALVAVSAEAGVQVGTER 117 (665)
T ss_dssp CCCSGGG-------HHHHHH----HHHHCSEEEEEEETTTCSCHHHHH
T ss_pred CCCccch-------HHHHHH----HHhhcCcEEEEEcCCcccchhHHH
Confidence 9997641 122222 234569999999998777765544
No 209
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.02 E-value=5.9e-10 Score=85.95 Aligned_cols=140 Identities=14% Similarity=0.143 Sum_probs=76.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCc--EEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
.+|+|+|+||||||||+|.|+|...... ..+..+.......... .+. .+.+.||||........
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~--~~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~~----------- 71 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLE--SKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRRIT----------- 71 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC-----CCCSCEEEEEEEEE-TTEEEEEEEEECSSGGGTTCCC-----------
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEEEE-CCEEEEEEEEECCCchhhhhhh-----------
Confidence 6899999999999999999999864221 1222222222333333 443 45679999965422110
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH--------h-cCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhhh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------A-NGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKEY 162 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~~ 162 (231)
......++++++|+|..+..+..+.. . ....++. .+.++.+.. ...+....+ .+..+|++
T Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~-~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal 150 (199)
T 2f9l_A 72 SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM-LVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSAL 150 (199)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEE-EEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEE-EEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCC
Confidence 11224678899999987432222111 0 1112222 222222210 012222112 34558999
Q ss_pred hHhhHHHHHHHHHHHH
Q 038053 163 SKQEISKLMGQMQESY 178 (231)
Q Consensus 163 ~~~~i~~l~~~i~~~~ 178 (231)
++.++.+++..+....
T Consensus 151 ~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 151 DSTNVEEAFKNILTEI 166 (199)
T ss_dssp TCTTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999888877754
No 210
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.02 E-value=3.2e-11 Score=90.15 Aligned_cols=80 Identities=21% Similarity=0.175 Sum_probs=54.7
Q ss_pred CCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccc-cCCCCcceeeeeeeEEeeCCcEEEEEeCC
Q 038053 3 SGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKAS-ADSSGVTKTCEMKTTVLKDGQVVNVIDTP 81 (231)
Q Consensus 3 ~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~Dtp 81 (231)
+.|++..++++++|++++| ..++|+|+||||||||++.|+|.. +..+ ...++.+.... ... .. ++++.+
T Consensus 15 ~~~g~~~~l~~vsl~i~~G--e~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~---~~~-~~---~~~q~~ 84 (158)
T 1htw_A 15 LRFGKKFAEILLKLHTEKA--IMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE---YNI-AG---KMIYHF 84 (158)
T ss_dssp HHHHHHHHHHHHHHCCSSC--EEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE---EEE-TT---EEEEEE
T ss_pred HHHHHHHHHhccccccCCC--CEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee---ccC-CC---cceecc
Confidence 4566777899999999999 999999999999999999999987 4433 23333333211 111 22 356666
Q ss_pred CCcCCCCCchHH
Q 038053 82 GLFDSSAGSEFV 93 (231)
Q Consensus 82 g~~~~~~~~~~~ 93 (231)
.++ ..++.+.+
T Consensus 85 ~l~-~ltv~e~l 95 (158)
T 1htw_A 85 DLY-RLADPEEL 95 (158)
T ss_dssp ECT-TCSCTTHH
T ss_pred ccc-cCCcHHHH
Confidence 666 55554544
No 211
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.02 E-value=2.2e-11 Score=97.21 Aligned_cols=82 Identities=20% Similarity=0.062 Sum_probs=54.4
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEEeeCCcEEEEEeC
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTVLKDGQVVNVIDT 80 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~Dt 80 (231)
++.|++ ++++++|++++ .+++|+|+||||||||+++|+|...+..| .+....... ..........++++.
T Consensus 8 ~~~y~~--~l~~isl~i~~---e~~~liG~nGsGKSTLl~~l~Gl~~p~~G----~i~~~g~~~~~~~~~~~~i~~v~q~ 78 (240)
T 2onk_A 8 EKRLGN--FRLNVDFEMGR---DYCVLLGPTGAGKSVFLELIAGIVKPDRG----EVRLNGADITPLPPERRGIGFVPQD 78 (240)
T ss_dssp EEEETT--EEEEEEEEECS---SEEEEECCTTSSHHHHHHHHHTSSCCSEE----EEEETTEECTTSCTTTSCCBCCCSS
T ss_pred EEEeCC--EEeeeEEEECC---EEEEEECCCCCCHHHHHHHHhCCCCCCce----EEEECCEECCcCchhhCcEEEEcCC
Confidence 556765 49999999997 38999999999999999999999874333 222211100 000002345678888
Q ss_pred CCCcCCCCCchH
Q 038053 81 PGLFDSSAGSEF 92 (231)
Q Consensus 81 pg~~~~~~~~~~ 92 (231)
|.+++..++.++
T Consensus 79 ~~l~~~ltv~en 90 (240)
T 2onk_A 79 YALFPHLSVYRN 90 (240)
T ss_dssp CCCCTTSCHHHH
T ss_pred CccCCCCcHHHH
Confidence 888776554443
No 212
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.02 E-value=6.2e-11 Score=106.21 Aligned_cols=78 Identities=19% Similarity=0.147 Sum_probs=57.0
Q ss_pred CCCCCC--cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-E--EeeCCcEEE
Q 038053 2 SSGMGE--RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-T--VLKDGQVVN 76 (231)
Q Consensus 2 ~~~~~~--~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-~--~~~~~~~~~ 76 (231)
++.|++ .++++++++++++| ..++|+|+||||||||+++|+|... +..|.+..+..... . ........+
T Consensus 348 ~~~y~~~~~~~l~~i~l~i~~G--~~~~ivG~sGsGKSTll~~l~g~~~----p~~G~i~~~g~~~~~~~~~~~~~~i~~ 421 (582)
T 3b5x_A 348 TFTYQGKEKPALSHVSFSIPQG--KTVALVGRSGSGKSTIANLFTRFYD----VDSGSICLDGHDVRDYKLTNLRRHFAL 421 (582)
T ss_pred EEEcCCCCccccccceEEECCC--CEEEEECCCCCCHHHHHHHHhcCCC----CCCCEEEECCEEhhhCCHHHHhcCeEE
Confidence 456764 67999999999999 9999999999999999999999987 34444443321110 0 001345778
Q ss_pred EEeCCCCcC
Q 038053 77 VIDTPGLFD 85 (231)
Q Consensus 77 l~Dtpg~~~ 85 (231)
++|.|.+++
T Consensus 422 v~Q~~~l~~ 430 (582)
T 3b5x_A 422 VSQNVHLFN 430 (582)
T ss_pred EcCCCcccc
Confidence 888887765
No 213
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.02 E-value=2.8e-10 Score=87.35 Aligned_cols=138 Identities=15% Similarity=0.162 Sum_probs=75.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcE--EEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQV--VNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
.+|+|+|+||||||||+|.|+|...... ..+..+.+........ .+.. +.+.||||........
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~--~~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~~----------- 95 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLE--SKSTIGVEFATRSIQV-DGKTIKAQIWDTAGLERYRAIT----------- 95 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCCS--CCCCCSEEEEEEEEEE-TTEEEEEEEEEECSCCSSSCCC-----------
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCC--CCCccceEEEEEEEEE-CCEEEEEEEEECCCCcchhhhh-----------
Confidence 6899999999999999999999875321 2233333333333333 4443 4469999975422111
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH--------hc-CCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhhh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------AN-GGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKEY 162 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~~ 162 (231)
...+..++.+++|+|..+..+..... .. ...++. .+.++.+.. +..+....+ .+..+|++
T Consensus 96 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~-~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sal 174 (191)
T 1oix_A 96 SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM-LVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSAL 174 (191)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEE-EEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred HHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEE-EEEECcccccccccCHHHHHHHHHHcCCEEEEEeCC
Confidence 11224567889999987432211100 01 112222 222222210 012222111 34458899
Q ss_pred hHhhHHHHHHHHHH
Q 038053 163 SKQEISKLMGQMQE 176 (231)
Q Consensus 163 ~~~~i~~l~~~i~~ 176 (231)
++.++.++++.+.+
T Consensus 175 d~~~v~~l~~~l~~ 188 (191)
T 1oix_A 175 DSTNVEAAFQTILT 188 (191)
T ss_dssp TCTTHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 99999988887755
No 214
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.01 E-value=2e-10 Score=97.39 Aligned_cols=89 Identities=24% Similarity=0.231 Sum_probs=59.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC-----CccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGR-----KAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIV 98 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~-----~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~ 98 (231)
..|+++|.+|+|||||+|+|+|. ..... ...+++|+...... .+..+.++||||+.......+.+..+.+
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~-~~~~gtT~~~~~~~----~~~~~~liDtPG~~~~~~~~~~l~~~~l 237 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITT-SYFPGTTLDMIEIP----LESGATLYDTPGIINHHQMAHFVDARDL 237 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEE-EECTTSSCEEEEEE----CSTTCEEEECCSCCCCSSGGGGSCTTTH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceee-cCCCCeEEeeEEEE----eCCCeEEEeCCCcCcHHHHHHHHhHHHH
Confidence 68999999999999999999987 22222 24566776544322 2333789999999865433333333333
Q ss_pred HHHhhhcCCccEEEEEEECC
Q 038053 99 KRIGLAKGGIHAVLVVFSVR 118 (231)
Q Consensus 99 ~~~~~~~~~~~~il~vvd~~ 118 (231)
..+.. ...+|.+++++++.
T Consensus 238 ~~~~~-~~~i~~~~~~l~~~ 256 (369)
T 3ec1_A 238 KIITP-KREIHPRVYQLNEG 256 (369)
T ss_dssp HHHSC-SSCCCCEEEEECTT
T ss_pred HHHhc-ccccCceEEEEcCC
Confidence 33322 26789999999983
No 215
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.01 E-value=1.6e-09 Score=93.65 Aligned_cols=91 Identities=13% Similarity=0.178 Sum_probs=58.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccc-------------C------------------CCCcceeeeeeeEEeeCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASA-------------D------------------SSGVTKTCEMKTTVLKDG 72 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~-------------~------------------~~~~t~~~~~~~~~~~~~ 72 (231)
.+|+++|.+|+|||||+|.|++........ . ..++|.+........ .+
T Consensus 25 ~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~-~~ 103 (434)
T 1zun_B 25 LRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST-AK 103 (434)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC-SS
T ss_pred eEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec-CC
Confidence 789999999999999999998654111000 0 023343333333333 56
Q ss_pred cEEEEEeCCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHH
Q 038053 73 QVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEE 126 (231)
Q Consensus 73 ~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~ 126 (231)
..+.++||||..+. ...+. ..+..+|++++|+|+++++.....
T Consensus 104 ~~~~iiDtpGh~~f-------~~~~~----~~~~~aD~~ilVvDa~~g~~~qt~ 146 (434)
T 1zun_B 104 RKFIIADTPGHEQY-------TRNMA----TGASTCDLAIILVDARYGVQTQTR 146 (434)
T ss_dssp EEEEEEECCCSGGG-------HHHHH----HHHTTCSEEEEEEETTTCSCHHHH
T ss_pred ceEEEEECCChHHH-------HHHHH----HHHhhCCEEEEEEECCCCCcHHHH
Confidence 78899999996531 11222 234788999999999877765554
No 216
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.01 E-value=1e-09 Score=98.09 Aligned_cols=142 Identities=15% Similarity=0.228 Sum_probs=81.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccc----c---------cCCCCcceeeeeeeEEee--C--CcEEEEEeCCCCcCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKA----S---------ADSSGVTKTCEMKTTVLK--D--GQVVNVIDTPGLFDS 86 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~----~---------~~~~~~t~~~~~~~~~~~--~--~~~~~l~Dtpg~~~~ 86 (231)
.+|+|+|..|+|||||++.|+....... + ....++|.........+. . ...+.++||||..+.
T Consensus 7 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF 86 (600)
T 2ywe_A 7 RNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDF 86 (600)
T ss_dssp EEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhH
Confidence 6899999999999999999975311000 0 001233433332233331 1 256789999998752
Q ss_pred CCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhhH-------HHHHhhcc
Q 038053 87 SAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRGA-------TELRDQQA 154 (231)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-------~~l~~~~~ 154 (231)
..++.. .+..+|++++|+|++++...+... .....|.+ .++|++|... +++.+.+.
T Consensus 87 -------~~ev~r----~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiI-vviNKiDl~~a~~~~v~~el~~~lg 154 (600)
T 2ywe_A 87 -------SYEVSR----ALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVII-PVINKIDLPSADVDRVKKQIEEVLG 154 (600)
T ss_dssp -------HHHHHH----HHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEE-EEEECTTSTTCCHHHHHHHHHHTSC
T ss_pred -------HHHHHH----HHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEE-EEEeccCccccCHHHHHHHHHHhhC
Confidence 122222 335679999999999777766544 22333332 3344444211 23444333
Q ss_pred ----chhhhhhhhHhhHHHHHHHHHHH
Q 038053 155 ----EVDSLKEYSKQEISKLMGQMQES 177 (231)
Q Consensus 155 ----~i~~is~~~~~~i~~l~~~i~~~ 177 (231)
+++++||++|.|++++++.+...
T Consensus 155 ~~~~~vi~vSAktg~GI~~Lle~I~~~ 181 (600)
T 2ywe_A 155 LDPEEAILASAKEGIGIEEILEAIVNR 181 (600)
T ss_dssp CCGGGCEECBTTTTBSHHHHHHHHHHH
T ss_pred CCcccEEEEEeecCCCchHHHHHHHHh
Confidence 47889999999999998887653
No 217
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.00 E-value=3.8e-10 Score=101.02 Aligned_cols=91 Identities=16% Similarity=0.220 Sum_probs=56.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEe-----------------eCCcEEEEEeCCCCcCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVL-----------------KDGQVVNVIDTPGLFDS 86 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-----------------~~~~~~~l~Dtpg~~~~ 86 (231)
.+|+++|.+|+|||||++.|++...... ..++.|.........+ .....+.++||||..+.
T Consensus 6 ~~V~IvGh~d~GKTTLl~~L~~~~v~~~--e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 6 PIVSVLGHVDHGKTTLLDHIRGSAVASR--EAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHSCC------CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred cEEEEECCCCCcHHHHHHHHhcccCccc--cCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 6899999999999999999998643211 1223333211111110 01125889999997653
Q ss_pred CCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH
Q 038053 87 SAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA 127 (231)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~ 127 (231)
... ....+..+|.+++|+|+++++......
T Consensus 84 ~~~-----------~~r~~~~aD~aILVvDa~~Gv~~qT~e 113 (594)
T 1g7s_A 84 TTL-----------RKRGGALADLAILIVDINEGFKPQTQE 113 (594)
T ss_dssp TTS-----------BCSSSBSCSEEEEEEETTTCCCHHHHH
T ss_pred HHH-----------HHHHHhhCCEEEEEEECCCCccHhHHH
Confidence 321 112346789999999999877665544
No 218
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=99.00 E-value=9.8e-10 Score=97.89 Aligned_cols=63 Identities=24% Similarity=0.255 Sum_probs=42.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEe------eCCcEEEEEeCCCCcCCC
Q 038053 22 GKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVL------KDGQVVNVIDTPGLFDSS 87 (231)
Q Consensus 22 ~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~------~~~~~~~l~Dtpg~~~~~ 87 (231)
+..+|+++|+||+|||||+|.|+|..... ..+++|..+..+...+ ..+..+.++||||+++..
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~---~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~ 105 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGF---SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVE 105 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCS---CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGG
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCcc---ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCccc
Confidence 34789999999999999999999987521 2333332221211111 246788999999998643
No 219
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.99 E-value=5.2e-11 Score=96.31 Aligned_cols=47 Identities=19% Similarity=0.230 Sum_probs=41.6
Q ss_pred CCCCCC----cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccc
Q 038053 2 SSGMGE----RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKAS 52 (231)
Q Consensus 2 ~~~~~~----~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~ 52 (231)
++.|++ +.++++++|+++ | .+++|+|+||||||||+++|+|.. +..|
T Consensus 8 ~~~y~~~~~~~~il~~vsl~i~-G--e~~~i~G~NGsGKSTLlk~l~Gl~-p~~G 58 (263)
T 2pjz_A 8 GITLSGKGYERFSLENINLEVN-G--EKVIILGPNGSGKTTLLRAISGLL-PYSG 58 (263)
T ss_dssp EEEEEEETTEEEEEEEEEEEEC-S--SEEEEECCTTSSHHHHHHHHTTSS-CCEE
T ss_pred EEEeCCCCccceeEEeeeEEEC-C--EEEEEECCCCCCHHHHHHHHhCCC-CCCc
Confidence 456665 789999999999 9 999999999999999999999998 6544
No 220
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.98 E-value=3.7e-10 Score=95.62 Aligned_cols=89 Identities=21% Similarity=0.279 Sum_probs=55.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCc------cccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKA------FKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEI 97 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~------~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~ 97 (231)
.+|+++|.+|+|||||+|+|+|... ... ...+++|+...... -...+.++||||+.+.....+.+..+.
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~-~~~~gtT~~~~~~~----~~~~~~liDtPG~~~~~~~~~~l~~~~ 235 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITT-SHFPGTTLDLIDIP----LDEESSLYDTPGIINHHQMAHYVGKQS 235 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEE-ECCC----CEEEEE----SSSSCEEEECCCBCCTTSGGGGSCHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceec-CCCCCeecceEEEE----ecCCeEEEeCCCcCcHHHHHHHhhHHH
Confidence 6899999999999999999998731 112 24566666544322 122378999999987543333333444
Q ss_pred HHHHhhhcCCccEEEEEEECC
Q 038053 98 VKRIGLAKGGIHAVLVVFSVR 118 (231)
Q Consensus 98 ~~~~~~~~~~~~~il~vvd~~ 118 (231)
+..+.. ...++.+++++++.
T Consensus 236 l~~~~~-~~~i~~~~~~l~~~ 255 (368)
T 3h2y_A 236 LKLITP-TKEIKPMVFQLNEE 255 (368)
T ss_dssp HHHHSC-SSCCCCEEEEECTT
T ss_pred HHHhcc-ccccCceEEEEcCC
Confidence 433322 35778888888873
No 221
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.96 E-value=1e-10 Score=105.16 Aligned_cols=77 Identities=17% Similarity=0.147 Sum_probs=56.1
Q ss_pred CCCCC-CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee----EEeeCCcEEE
Q 038053 2 SSGMG-ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT----TVLKDGQVVN 76 (231)
Q Consensus 2 ~~~~~-~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~ 76 (231)
++.|+ +.++++|+++++++| ..++|+|+||||||||+++|+|...+. .|.+..+..... ... .....+
T Consensus 361 ~~~y~~~~~~l~~isl~i~~G--~~~~ivG~sGsGKSTll~~l~g~~~p~----~G~i~~~g~~i~~~~~~~~-r~~i~~ 433 (598)
T 3qf4_B 361 WFSYDKKKPVLKDITFHIKPG--QKVALVGPTGSGKTTIVNLLMRFYDVD----RGQILVDGIDIRKIKRSSL-RSSIGI 433 (598)
T ss_dssp ECCSSSSSCSCCSEEEECCTT--CEEEEECCTTSSTTHHHHHHTTSSCCS----EEEEEETTEEGGGSCHHHH-HHHEEE
T ss_pred EEECCCCCccccceEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCcCCC----CeEEEECCEEhhhCCHHHH-HhceEE
Confidence 56775 467999999999999 999999999999999999999998743 333332211100 001 235778
Q ss_pred EEeCCCCcC
Q 038053 77 VIDTPGLFD 85 (231)
Q Consensus 77 l~Dtpg~~~ 85 (231)
++|.|.+++
T Consensus 434 v~Q~~~lf~ 442 (598)
T 3qf4_B 434 VLQDTILFS 442 (598)
T ss_dssp ECTTCCCCS
T ss_pred EeCCCcccc
Confidence 888888775
No 222
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.96 E-value=1.3e-09 Score=97.60 Aligned_cols=142 Identities=17% Similarity=0.205 Sum_probs=78.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccc-------------cCCCCcceeeeeeeEEeeC----CcEEEEEeCCCCcCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKAS-------------ADSSGVTKTCEMKTTVLKD----GQVVNVIDTPGLFDS 86 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~-------------~~~~~~t~~~~~~~~~~~~----~~~~~l~Dtpg~~~~ 86 (231)
.+|+|+|..|+|||||++.|+........ ....++|.........+.. ...+.++||||..+.
T Consensus 5 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF 84 (599)
T 3cb4_D 5 RNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDF 84 (599)
T ss_dssp EEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchHH
Confidence 68999999999999999999753211000 0012344443333333311 357889999998652
Q ss_pred CCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhhH-------HHHHhhcc
Q 038053 87 SAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRGA-------TELRDQQA 154 (231)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-------~~l~~~~~ 154 (231)
..++... +..+|.+++|+|++++....... .....|.+ .++|++|... +++.+.+.
T Consensus 85 -------~~ev~~~----l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiI-vViNKiDl~~a~~~~v~~ei~~~lg 152 (599)
T 3cb4_D 85 -------SYEVSRS----LAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVV-PVLNKIDLPAADPERVAEEIEDIVG 152 (599)
T ss_dssp -------HHHHHHH----HHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEE-EEEECTTSTTCCHHHHHHHHHHHTC
T ss_pred -------HHHHHHH----HHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEE-EeeeccCcccccHHHHHHHHHHHhC
Confidence 2223332 34569999999998777665543 22233433 3344443211 23444333
Q ss_pred ----chhhhhhhhHhhHHHHHHHHHHH
Q 038053 155 ----EVDSLKEYSKQEISKLMGQMQES 177 (231)
Q Consensus 155 ----~i~~is~~~~~~i~~l~~~i~~~ 177 (231)
+++.+|+++|.|++++++.+...
T Consensus 153 ~~~~~vi~vSAktg~GI~~Ll~~I~~~ 179 (599)
T 3cb4_D 153 IDATDAVRCSAKTGVGVQDVLERLVRD 179 (599)
T ss_dssp CCCTTCEEECTTTCTTHHHHHHHHHHH
T ss_pred CCcceEEEeecccCCCchhHHHHHhhc
Confidence 47889999999999998887653
No 223
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.95 E-value=6.7e-11 Score=106.01 Aligned_cols=78 Identities=21% Similarity=0.179 Sum_probs=56.1
Q ss_pred CCCCCC--cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-e---EEeeCCcEE
Q 038053 2 SSGMGE--RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-T---TVLKDGQVV 75 (231)
Q Consensus 2 ~~~~~~--~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~---~~~~~~~~~ 75 (231)
++.|++ +++++++++++++| ..++|+|+||||||||+++|+|...+. .|.+..+.... . ... .....
T Consensus 348 ~~~y~~~~~~~l~~v~~~i~~G--~~~~ivG~sGsGKSTLl~~l~g~~~p~----~G~i~~~g~~~~~~~~~~~-~~~i~ 420 (582)
T 3b60_A 348 TFTYPGREVPALRNINLKIPAG--KTVALVGRSGSGKSTIASLITRFYDID----EGHILMDGHDLREYTLASL-RNQVA 420 (582)
T ss_dssp EECSSSSSCCSEEEEEEEECTT--CEEEEEECTTSSHHHHHHHHTTTTCCS----EEEEEETTEETTTBCHHHH-HHTEE
T ss_pred EEEcCCCCCccccceeEEEcCC--CEEEEECCCCCCHHHHHHHHhhccCCC----CCeEEECCEEccccCHHHH-HhhCe
Confidence 457763 67999999999999 999999999999999999999998743 33332221110 0 001 23567
Q ss_pred EEEeCCCCcCC
Q 038053 76 NVIDTPGLFDS 86 (231)
Q Consensus 76 ~l~Dtpg~~~~ 86 (231)
+++|.|.+++.
T Consensus 421 ~v~Q~~~l~~~ 431 (582)
T 3b60_A 421 LVSQNVHLFND 431 (582)
T ss_dssp EECSSCCCCSS
T ss_pred EEccCCcCCCC
Confidence 88998887753
No 224
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.95 E-value=6.2e-12 Score=110.13 Aligned_cols=137 Identities=12% Similarity=0.212 Sum_probs=85.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL 103 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~ 103 (231)
.+|+++|++|+|||||++.|++..... ...+++|.+.......+ .+..+.++||||..+.... ...
T Consensus 5 ~~V~IvGhvd~GKTTLl~~L~~~~v~~--~e~~GIT~~i~~~~v~~-~~~~i~~iDTPGhe~f~~~-----------~~~ 70 (501)
T 1zo1_I 5 PVVTIMGHVDHGKTSLLEYIRSTKVAS--GEAGGITQHIGAYHVET-ENGMITFLDTPGHAAFTSM-----------RAR 70 (501)
T ss_dssp CCEEEEESTTSSSHHHHHHHHHHHHSB--TTBCCCCCCSSCCCCCT-TSSCCCEECCCTTTCCTTS-----------BCS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCcc--ccCCCeeEeEEEEEEEE-CCEEEEEEECCCcHHHHHH-----------HHH
Confidence 689999999999999999998754321 12345555443333333 5667889999997553211 123
Q ss_pred hcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhhH---HHHHhh----------c---cchhhhhhh
Q 038053 104 AKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRGA---TELRDQ----------Q---AEVDSLKEY 162 (231)
Q Consensus 104 ~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~---~~l~~~----------~---~~i~~is~~ 162 (231)
.+..+|.+++|+|++++...+... .....|++ .++|++|... ..+... . -+++++||+
T Consensus 71 ~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiI-VviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAk 149 (501)
T 1zo1_I 71 GAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVV-VAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAK 149 (501)
T ss_dssp SSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEE-EEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTT
T ss_pred HHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEE-EEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeee
Confidence 346789999999998654433222 22334433 4455554211 011111 1 157789999
Q ss_pred hHhhHHHHHHHHH
Q 038053 163 SKQEISKLMGQMQ 175 (231)
Q Consensus 163 ~~~~i~~l~~~i~ 175 (231)
+|.|+.+++..+.
T Consensus 150 tG~gI~eLle~I~ 162 (501)
T 1zo1_I 150 AGTGIDELLDAIL 162 (501)
T ss_dssp TCTTCTTHHHHTT
T ss_pred eccCcchhhhhhh
Confidence 9999998888764
No 225
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.94 E-value=2.9e-09 Score=82.79 Aligned_cols=81 Identities=20% Similarity=0.290 Sum_probs=53.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeC--CcEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
.+|+++|.+|+|||||+|.+++..... ...+++. ......... +..+.++||||... ....+.
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~--- 72 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQYRD---TQTSITD--SSAIYKVNNNRGNSLTLIDLPGHES-------LRFQLL--- 72 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCCCC---BCCCCSC--EEEEEECSSTTCCEEEEEECCCCHH-------HHHHHH---
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCccc---ccCCcce--eeEEEEecCCCccEEEEEECCCChh-------HHHHHH---
Confidence 799999999999999999999876321 1222222 222233311 56789999999753 111122
Q ss_pred hhhcCCccEEEEEEECCC
Q 038053 102 GLAKGGIHAVLVVFSVRS 119 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~ 119 (231)
...+..+|++++|+|+++
T Consensus 73 ~~~~~~~~~~i~v~d~~~ 90 (214)
T 2fh5_B 73 DRFKSSARAVVFVVDSAA 90 (214)
T ss_dssp HHHGGGEEEEEEEEETTT
T ss_pred HHHHhhCCEEEEEEECCC
Confidence 223567899999999984
No 226
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.93 E-value=4.6e-10 Score=99.62 Aligned_cols=144 Identities=10% Similarity=0.102 Sum_probs=74.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee----eEEe---eCCcEEEEEeCCCCcCCCCCchHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK----TTVL---KDGQVVNVIDTPGLFDSSAGSEFVGKE 96 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~----~~~~---~~~~~~~l~Dtpg~~~~~~~~~~~~~~ 96 (231)
.+|+|+|.+|||||||+|.+++...........+.+...... .... ..+..+.++||||........ .
T Consensus 42 ~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~----~- 116 (535)
T 3dpu_A 42 IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASH----Q- 116 (535)
T ss_dssp EEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTC----H-
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHH----H-
Confidence 799999999999999999999976321101111111111000 0111 125678999999954422211 1
Q ss_pred HHHHHhhhcCCccEEEEEEECCCCCCHHHHH------hcCCCCcHHHHHHHHHhhH------HHHHhhcc----chhhhh
Q 038053 97 IVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA------ANGGQPYTDEFLAELKRGA------TELRDQQA----EVDSLK 160 (231)
Q Consensus 97 ~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~------~~l~~~~~----~i~~is 160 (231)
. .+..+|++++|+|+++ ....... .....|.+ .+.|++|... ..+..... +++.+|
T Consensus 117 --~----~l~~~d~ii~V~D~s~-~~~~~~~~~~l~~~~~~~pvi-lV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vS 188 (535)
T 3dpu_A 117 --F----FMTRSSVYMLLLDSRT-DSNKHYWLRHIEKYGGKSPVI-VVMNKIDENPSYNIEQKKINERFPAIENRFHRIS 188 (535)
T ss_dssp --H----HHHSSEEEEEEECGGG-GGGHHHHHHHHHHHSSSCCEE-EEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECC
T ss_pred --H----HccCCcEEEEEEeCCC-chhHHHHHHHHHHhCCCCCEE-EEEECCCcccccccCHHHHHHHHHhcCCceEEEe
Confidence 1 1235799999999973 2222111 22234443 3445544210 22332222 578899
Q ss_pred hhhHhhHHHHHHHHHHHHHH
Q 038053 161 EYSKQEISKLMGQMQESYED 180 (231)
Q Consensus 161 ~~~~~~i~~l~~~i~~~~~~ 180 (231)
|.+|.|+++++..+.....+
T Consensus 189 A~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 189 CKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp C-----CTTHHHHHHHHHTC
T ss_pred cCcccCHHHHHHHHHHHHhc
Confidence 99999999999998876543
No 227
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.93 E-value=2.2e-09 Score=82.42 Aligned_cols=142 Identities=18% Similarity=0.175 Sum_probs=73.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCc--EEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAGSEFVGKEIVKRI 101 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~Dtpg~~~~~~~~~~~~~~~~~~~ 101 (231)
.+|+|+|.+|||||||+|.++|...... ...++++.+........ .+. .+.++||+|..... .. +.
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~l~~~Dt~~~~~~~---~~----~~--- 74 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGVHDSMD-SDXEVLGEDTYERTLMV-DGESATIILLDMWENKGEN---EW----LH--- 74 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEE-TTEEEEEEEECCCCC-------CT----TG---
T ss_pred EEEEEECCCCCCHHHHHHHHhcCcCCcC-ccccccceeEEEEEEEE-CCeEEEEEEEEeccCcchh---hh----HH---
Confidence 6899999999999999999997432111 11111211211122222 443 44678999854310 00 00
Q ss_pred hhhcCCccEEEEEEECCCCCCHHHHH--------h--cCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhh
Q 038053 102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------A--NGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKE 161 (231)
Q Consensus 102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~--~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~ 161 (231)
...+..+|++++|+|.++.-+..... . ....|++ .+.++.+.. ...+....+ +++.+||
T Consensus 75 ~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~pii-lV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA 153 (192)
T 2cjw_A 75 DHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII-LVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSA 153 (192)
T ss_dssp GGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEE-EEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBT
T ss_pred HhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEE-EEEechhhhccccccHHHHHHHHHHhCCceEEecc
Confidence 11123468999999998532221111 1 1233333 222332210 011211222 5677899
Q ss_pred hhHhhHHHHHHHHHHHH
Q 038053 162 YSKQEISKLMGQMQESY 178 (231)
Q Consensus 162 ~~~~~i~~l~~~i~~~~ 178 (231)
++|.|+++++..+....
T Consensus 154 ~~g~~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 154 AVQHNVKELFEGIVRQV 170 (192)
T ss_dssp TTTBSHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHH
Confidence 99999999998877643
No 228
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.93 E-value=2.8e-09 Score=95.86 Aligned_cols=85 Identities=18% Similarity=0.217 Sum_probs=62.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCcccccc-----------------------------CCCCcceeeeeeeEEeeCCc
Q 038053 23 KRTVVLLGRTGNGKSATGNSILGRKAFKASA-----------------------------DSSGVTKTCEMKTTVLKDGQ 73 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~-----------------------------~~~~~t~~~~~~~~~~~~~~ 73 (231)
..+|+++|.+|+|||||+|.|++........ ...|+|.+........ .+.
T Consensus 167 ~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~-~~~ 245 (611)
T 3izq_1 167 HLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-HRA 245 (611)
T ss_dssp CCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC-SSC
T ss_pred ceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec-CCc
Confidence 3799999999999999999999874322110 0145666655555555 677
Q ss_pred EEEEEeCCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCC
Q 038053 74 VVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRS 119 (231)
Q Consensus 74 ~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~ 119 (231)
.+.++||||... +.......+..+|++++|+|+++
T Consensus 246 ~~~iiDTPG~e~-----------f~~~~~~~~~~aD~~llVVDa~~ 280 (611)
T 3izq_1 246 NFTIVDAPGHRD-----------FVPNAIMGISQADMAILCVDCST 280 (611)
T ss_dssp EEEEEECCSSSC-----------HHHHHTTTSSCCSEEEEEEECSH
T ss_pred eEEEEECCCCcc-----------cHHHHHHHHhhcCceEEEEECCC
Confidence 899999999754 33444556688999999999984
No 229
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.92 E-value=6.5e-11 Score=105.98 Aligned_cols=78 Identities=24% Similarity=0.147 Sum_probs=56.3
Q ss_pred CCCCC--CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee----EEeeCCcEE
Q 038053 2 SSGMG--ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT----TVLKDGQVV 75 (231)
Q Consensus 2 ~~~~~--~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~ 75 (231)
++.|+ +.++++++++++++| ..++|+|+||||||||+++|+|...+. .|.+..+..... ... .....
T Consensus 346 ~~~y~~~~~~~l~~isl~i~~G--~~~~ivG~sGsGKSTll~~l~g~~~p~----~G~i~~~g~~~~~~~~~~~-r~~i~ 418 (578)
T 4a82_A 346 SFQYNDNEAPILKDINLSIEKG--ETVAFVGMSGGGKSTLINLIPRFYDVT----SGQILIDGHNIKDFLTGSL-RNQIG 418 (578)
T ss_dssp EECSCSSSCCSEEEEEEEECTT--CEEEEECSTTSSHHHHHTTTTTSSCCS----EEEEEETTEEGGGSCHHHH-HHTEE
T ss_pred EEEcCCCCCcceeeeEEEECCC--CEEEEECCCCChHHHHHHHHhcCCCCC----CcEEEECCEEhhhCCHHHH-hhheE
Confidence 45675 457999999999999 999999999999999999999998743 333332211100 001 23578
Q ss_pred EEEeCCCCcCC
Q 038053 76 NVIDTPGLFDS 86 (231)
Q Consensus 76 ~l~Dtpg~~~~ 86 (231)
+++|.|.+++.
T Consensus 419 ~v~Q~~~l~~~ 429 (578)
T 4a82_A 419 LVQQDNILFSD 429 (578)
T ss_dssp EECSSCCCCSS
T ss_pred EEeCCCccCcc
Confidence 88999988764
No 230
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=98.90 E-value=8.9e-11 Score=105.45 Aligned_cols=77 Identities=21% Similarity=0.180 Sum_probs=54.8
Q ss_pred CCCCCC---cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-e---EEeeCCcE
Q 038053 2 SSGMGE---RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-T---TVLKDGQV 74 (231)
Q Consensus 2 ~~~~~~---~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~---~~~~~~~~ 74 (231)
++.|++ .++++++++++++| ..++|+|+||||||||+++|+|...+. .|.+..+.... . ... ....
T Consensus 348 ~~~y~~~~~~~vl~~isl~i~~G--~~~~ivG~sGsGKSTLl~~l~g~~~p~----~G~i~~~g~~i~~~~~~~~-~~~i 420 (595)
T 2yl4_A 348 HFAYPARPEVPIFQDFSLSIPSG--SVTALVGPSGSGKSTVLSLLLRLYDPA----SGTISLDGHDIRQLNPVWL-RSKI 420 (595)
T ss_dssp EEECSSCTTSEEEEEEEEEECTT--CEEEEECCTTSSSTHHHHHHTTSSCCS----EEEEEETTEETTTBCHHHH-HHSE
T ss_pred EEEeCCCCCCccccceEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCcCCC----CcEEEECCEEhhhCCHHHH-Hhce
Confidence 456654 46999999999999 999999999999999999999998743 33332221110 0 001 2346
Q ss_pred EEEEeCCCCcC
Q 038053 75 VNVIDTPGLFD 85 (231)
Q Consensus 75 ~~l~Dtpg~~~ 85 (231)
.+++|.|.+++
T Consensus 421 ~~v~Q~~~l~~ 431 (595)
T 2yl4_A 421 GTVSQEPILFS 431 (595)
T ss_dssp EEECSSCCCCS
T ss_pred EEEccCCcccC
Confidence 78888888765
No 231
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.90 E-value=1.6e-09 Score=96.19 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=24.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAF 49 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~ 49 (231)
.+|+|+|.+|+|||||+|.|+|....
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~~~ 91 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQEVP 91 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCccc
Confidence 79999999999999999999998753
No 232
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.90 E-value=8.3e-11 Score=105.43 Aligned_cols=77 Identities=21% Similarity=0.117 Sum_probs=55.3
Q ss_pred CCCC--CCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee----eEEeeCCcEE
Q 038053 2 SSGM--GERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK----TTVLKDGQVV 75 (231)
Q Consensus 2 ~~~~--~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~----~~~~~~~~~~ 75 (231)
++.| +..+++++++|++++| ..++|+|+||||||||+++|+|...+.. |.+..+.... .... .....
T Consensus 348 ~~~y~~~~~~~l~~isl~i~~G--e~~~ivG~sGsGKSTll~~l~g~~~~~~----G~i~i~g~~i~~~~~~~~-r~~i~ 420 (587)
T 3qf4_A 348 EFRYFENTDPVLSGVNFSVKPG--SLVAVLGETGSGKSTLMNLIPRLIDPER----GRVEVDELDVRTVKLKDL-RGHIS 420 (587)
T ss_dssp EECSSSSSCCSEEEEEEEECTT--CEEEEECSSSSSHHHHHHTTTTSSCCSE----EEEEESSSBGGGBCHHHH-HHHEE
T ss_pred EEEcCCCCCcceeceEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCccCCC----cEEEECCEEcccCCHHHH-HhheE
Confidence 4567 3567999999999999 9999999999999999999999987433 3222221100 0001 34577
Q ss_pred EEEeCCCCcC
Q 038053 76 NVIDTPGLFD 85 (231)
Q Consensus 76 ~l~Dtpg~~~ 85 (231)
+++|.|.+++
T Consensus 421 ~v~Q~~~lf~ 430 (587)
T 3qf4_A 421 AVPQETVLFS 430 (587)
T ss_dssp EECSSCCCCS
T ss_pred EECCCCcCcC
Confidence 8888888764
No 233
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.90 E-value=6.9e-12 Score=112.39 Aligned_cols=85 Identities=20% Similarity=0.173 Sum_probs=38.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCccccc-----------------------------cCCCCcceeeeeeeEEeeCCc
Q 038053 23 KRTVVLLGRTGNGKSATGNSILGRKAFKAS-----------------------------ADSSGVTKTCEMKTTVLKDGQ 73 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~~~~~ 73 (231)
..+|+++|.+|+|||||+|.|++....... ....++|.+........ .+.
T Consensus 177 ~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~-~~~ 255 (592)
T 3mca_A 177 VVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES-DKK 255 (592)
T ss_dssp EEEEEEECCSSSTHHHHHHHHHHHHHCC----------------------------------------------------
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe-CCe
Confidence 368999999999999999999753211100 01235565554444444 567
Q ss_pred EEEEEeCCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCC
Q 038053 74 VVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRS 119 (231)
Q Consensus 74 ~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~ 119 (231)
.+.++||||..+... .+...+..+|++++|+|+++
T Consensus 256 ~i~iiDTPGh~~f~~-----------~~~~~~~~aD~alLVVDa~~ 290 (592)
T 3mca_A 256 IYEIGDAPGHRDFIS-----------GMIAGASSADFAVLVVDSSQ 290 (592)
T ss_dssp ---CCEEESSSEEEE-----------ECCC-------CCSEEEEEE
T ss_pred EEEEEECCChHHHHH-----------HHHHHHhhCCEEEEEEECCC
Confidence 888999999764211 01123356899999999974
No 234
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.90 E-value=6.5e-10 Score=84.99 Aligned_cols=80 Identities=11% Similarity=0.177 Sum_probs=50.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccC-CCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASAD-SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG 102 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~ 102 (231)
.+|+++|.+|||||||+|.|++......... .++.+.. . ....+.++||||....... + ..++.
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~-------~-~~~~~~l~Dt~G~~~~~~~---~----~~~~~ 113 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD-------Y-DGSGVTLVDFPGHVKLRYK---L----SDYLK 113 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSSCC------------C-------C-CCTTCSEEEETTCCBSSCC---H----HHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeee-------e-cCCeEEEEECCCCchHHHH---H----HHHHH
Confidence 7999999999999999999998764221111 1111111 1 3456678999998654321 1 12223
Q ss_pred hhcCCccEEEEEEECC
Q 038053 103 LAKGGIHAVLVVFSVR 118 (231)
Q Consensus 103 ~~~~~~~~il~vvd~~ 118 (231)
.....+|++++|+|++
T Consensus 114 ~~~~~~~~~i~v~d~~ 129 (193)
T 2ged_A 114 TRAKFVKGLIFMVDST 129 (193)
T ss_dssp HHGGGEEEEEEEEETT
T ss_pred hhcccCCEEEEEEECC
Confidence 3335679999999987
No 235
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.89 E-value=9.2e-09 Score=93.77 Aligned_cols=93 Identities=27% Similarity=0.401 Sum_probs=57.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHh---CCCcccccc-------C------CCCcceeeeeeeEEeeCCcEEEEEeCCCCcCC
Q 038053 23 KRTVVLLGRTGNGKSATGNSIL---GRKAFKASA-------D------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDS 86 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~---g~~~~~~~~-------~------~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~ 86 (231)
..+|+|+|.+|+|||||+|.|+ |........ + ..+.|.........+ .+..+.++||||..+.
T Consensus 12 ~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~-~~~~i~liDTPG~~df 90 (691)
T 1dar_A 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW-KDHRINIIDTPGHVDF 90 (691)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEE-TTEEEEEECCCSSTTC
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEE-CCeEEEEEECcCccch
Confidence 3789999999999999999998 322110000 0 223444444444445 6788999999998652
Q ss_pred CCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH
Q 038053 87 SAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA 127 (231)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~ 127 (231)
..+... .+..+|.+++|+|++++.......
T Consensus 91 -------~~~~~~----~l~~aD~~ilVvDa~~g~~~~t~~ 120 (691)
T 1dar_A 91 -------TIEVER----SMRVLDGAIVVFDSSQGVEPQSET 120 (691)
T ss_dssp -------HHHHHH----HHHHCSEEEEEEETTTCSCHHHHH
T ss_pred -------HHHHHH----HHHHCCEEEEEEECCCCcchhhHH
Confidence 122222 234579999999998777765543
No 236
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.88 E-value=1.7e-08 Score=95.39 Aligned_cols=91 Identities=16% Similarity=0.162 Sum_probs=57.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCcccc--------------ccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCC
Q 038053 23 KRTVVLLGRTGNGKSATGNSILGRKAFKA--------------SADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSA 88 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~ 88 (231)
..+|+++|.+|+|||||++.|++...... .....++|.+........ .+..+.++||||..+
T Consensus 296 ~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~-~~~kI~IIDTPGHed--- 371 (1289)
T 3avx_A 296 HVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT-PTRHYAHVDCPGHAD--- 371 (1289)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEEC-SSCEEEEEECCCHHH---
T ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcC-CCEEEEEEECCChHH---
Confidence 37899999999999999999987421000 001234444432222333 567889999999543
Q ss_pred CchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHH
Q 038053 89 GSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEE 125 (231)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~ 125 (231)
+.......+..+|++++|+|++++...+.
T Consensus 372 --------F~~~mi~gas~AD~aILVVDAtdGv~~QT 400 (1289)
T 3avx_A 372 --------YVKNMITGAAQMDGAILVVAATDGPMPQT 400 (1289)
T ss_dssp --------HHHHHHHTSCCCSEEEEEEETTTCSCTTH
T ss_pred --------HHHHHHHHHhhCCEEEEEEcCCccCcHHH
Confidence 33334455678999999999987655444
No 237
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.87 E-value=4.8e-10 Score=96.02 Aligned_cols=75 Identities=23% Similarity=0.173 Sum_probs=49.8
Q ss_pred cccCCCcccCCCCCCce--------------------EEEEEcCCCCCHHHHHHHHhCCCccccccC-CCCcceeeeeee
Q 038053 8 RVIDGDWKPTSSSNGKR--------------------TVVLLGRTGNGKSATGNSILGRKAFKASAD-SSGVTKTCEMKT 66 (231)
Q Consensus 8 ~~~~~~~~~~i~~g~~~--------------------~i~lvG~~g~GKSTLin~l~g~~~~~~~~~-~~~~t~~~~~~~ 66 (231)
..+++++++.+++| . .++|+|+||||||||+|+|+|...+..|.. .++..... ...
T Consensus 36 ~~~l~~is~~i~~G--e~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~-~~~ 112 (413)
T 1tq4_A 36 QEILNLIELRMRAG--NIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTM-ERH 112 (413)
T ss_dssp HHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----C-CCE
T ss_pred HHHhhhccceecCC--CCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecce-eEE
Confidence 45788999999999 7 999999999999999999999876433321 11111100 011
Q ss_pred EEe-eCCcEEEEEeCCCCcC
Q 038053 67 TVL-KDGQVVNVIDTPGLFD 85 (231)
Q Consensus 67 ~~~-~~~~~~~l~Dtpg~~~ 85 (231)
... .....+.+.|+||+..
T Consensus 113 v~q~~~~~~ltv~D~~g~~~ 132 (413)
T 1tq4_A 113 PYKHPNIPNVVFWDLPGIGS 132 (413)
T ss_dssp EEECSSCTTEEEEECCCGGG
T ss_pred eccccccCCeeehHhhcccc
Confidence 111 1123567899999864
No 238
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.87 E-value=3e-09 Score=82.94 Aligned_cols=82 Identities=12% Similarity=0.206 Sum_probs=52.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053 23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG 102 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~ 102 (231)
..+|+|+|++|+|||||+|.|++....... .....+..... ....+.++||||..... .....++.
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~-~~~~~~~~~~~------~~~~~~l~Dt~G~~~~~-------~~~~~~~~ 77 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTV-VSQEPLSAADY------DGSGVTLVDFPGHVKLR-------YKLSDYLK 77 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSSCCCBC-CCSSCEEETTG------GGSSCEEEECCCCGGGT-------HHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCee-eecCceEEEEe------eCceEEEEECCCcHHHH-------HHHHHHHH
Confidence 379999999999999999999987642211 11111111111 34567799999986521 12223333
Q ss_pred hhcCCccEEEEEEECC
Q 038053 103 LAKGGIHAVLVVFSVR 118 (231)
Q Consensus 103 ~~~~~~~~il~vvd~~ 118 (231)
.....+|++++|+|.+
T Consensus 78 ~~~~~~~~~i~v~D~~ 93 (218)
T 1nrj_B 78 TRAKFVKGLIFMVDST 93 (218)
T ss_dssp HHGGGEEEEEEEEETT
T ss_pred hccccCCEEEEEEECC
Confidence 3334579999999997
No 239
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.83 E-value=9.4e-10 Score=90.65 Aligned_cols=63 Identities=27% Similarity=0.304 Sum_probs=37.7
Q ss_pred cCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCC-----C-CcceeeeeeeEEeeCCcEEEEEeCCCCcC
Q 038053 16 PTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADS-----S-GVTKTCEMKTTVLKDGQVVNVIDTPGLFD 85 (231)
Q Consensus 16 ~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~-----~-~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~ 85 (231)
+.+.+| .+++|+|+||||||||+|+|+|...+.++... + .+|+.... ... . ..+++||||+..
T Consensus 168 ~~~~~G--~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~--~~~--~-~g~v~dtpg~~~ 236 (307)
T 1t9h_A 168 IPHFQD--KTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVEL--IHT--S-GGLVADTPGFSS 236 (307)
T ss_dssp GGGGTT--SEEEEEESHHHHHHHHHHHHCC-------------------CCCCCE--EEE--T-TEEEESSCSCSS
T ss_pred HhhcCC--CEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHH--hhc--C-CEEEecCCCccc
Confidence 456678 89999999999999999999998765443211 1 22322111 111 1 468999999876
No 240
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.82 E-value=1.5e-09 Score=96.27 Aligned_cols=49 Identities=16% Similarity=0.158 Sum_probs=42.3
Q ss_pred CCCCCCCc-ccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccc
Q 038053 1 MSSGMGER-VIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKAS 52 (231)
Q Consensus 1 ~~~~~~~~-~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~ 52 (231)
+++.|++. .++++++ .+.+| .+++|+|+||||||||+++|+|...+..|
T Consensus 27 ls~~yg~~~~~l~~vs-~i~~G--e~~~LvG~NGaGKSTLlk~l~Gl~~p~~G 76 (538)
T 1yqt_A 27 CVHRYGVNAFVLYRLP-VVKEG--MVVGIVGPNGTGKSTAVKILAGQLIPNLC 76 (538)
T ss_dssp EEEECSTTCCEEECCC-CCCTT--SEEEEECCTTSSHHHHHHHHHTSSCCCTT
T ss_pred cEEEECCccccccCcC-cCCCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 35778876 4899999 99999 99999999999999999999999875443
No 241
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.80 E-value=4.3e-09 Score=85.01 Aligned_cols=60 Identities=27% Similarity=0.432 Sum_probs=39.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSA 88 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~ 88 (231)
.+++++|.||+|||||+|.|+|......+ ..+++|+..+... .+..+.++||||+.....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~-~~~g~T~~~~~~~----~~~~~~l~DtpG~~~~~~ 159 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVG-AQPGITKGIQWFS----LENGVKILDTPGILYKNI 159 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEE----CTTSCEEESSCEECCCCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccC-CCCCCccceEEEE----eCCCEEEEECCCcccCcC
Confidence 48999999999999999999998765443 3455665433211 245678999999987543
No 242
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.78 E-value=1.6e-08 Score=89.49 Aligned_cols=92 Identities=18% Similarity=0.256 Sum_probs=58.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccc--------------c------CCCCcceeeeeeeEEeeCCcEEEEEeCCCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKAS--------------A------DSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 83 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~--------------~------~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~ 83 (231)
.+|+|+|.+|+|||||+|.|++....... . ...++|.........+ .+..+.++||||.
T Consensus 14 ~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~liDTPG~ 92 (529)
T 2h5e_A 14 RTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPY-HDCLVNLLDTPGH 92 (529)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEE-TTEEEEEECCCCS
T ss_pred CEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEE-CCeEEEEEECCCC
Confidence 79999999999999999999864211100 0 0122333222333444 6788999999998
Q ss_pred cCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH
Q 038053 84 FDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA 127 (231)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~ 127 (231)
.+.. .. ....+..+|.+++|+|++++.......
T Consensus 93 ~df~-------~~----~~~~l~~aD~~IlVvDa~~g~~~~t~~ 125 (529)
T 2h5e_A 93 EDFS-------ED----TYRTLTAVDCCLMVIDAAKGVEDRTRK 125 (529)
T ss_dssp TTCC-------HH----HHHGGGGCSEEEEEEETTTCSCHHHHH
T ss_pred hhHH-------HH----HHHHHHHCCEEEEEEeCCccchHHHHH
Confidence 6532 11 223456789999999998777655543
No 243
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.78 E-value=2.5e-07 Score=83.16 Aligned_cols=43 Identities=21% Similarity=0.373 Sum_probs=30.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038053 164 KQEISKLMGQMQESYEDQIKRITEMVESELKETTTRLEQQLAE 206 (231)
Q Consensus 164 ~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 206 (231)
..|+..|...+...+..+++.-...+.+.++...+..+.+++.
T Consensus 292 ~~g~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~~~el~~ 334 (608)
T 3szr_A 292 KATVPCLAEKLTSELITHICKSLPLLENQIKETHQRITEELQK 334 (608)
T ss_dssp C---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3577788888888888888777777777777777777777766
No 244
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.78 E-value=4.9e-10 Score=92.22 Aligned_cols=42 Identities=17% Similarity=0.075 Sum_probs=37.2
Q ss_pred CCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053 3 SGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRK 47 (231)
Q Consensus 3 ~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~ 47 (231)
+.|+ ..+|+++++++++| .+++|+|+||||||||+++|+|..
T Consensus 109 ~~y~-~~vL~~vsl~i~~G--e~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 109 LITF-INALKLWLKGIPKK--NCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHH-HHHHHHHHHTCTTC--SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEcC-hhhhccceEEecCC--CEEEEECCCCCcHHHHHHHHhhhc
Confidence 3444 56899999999999 999999999999999999999764
No 245
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.78 E-value=2e-09 Score=84.60 Aligned_cols=40 Identities=15% Similarity=0.097 Sum_probs=25.0
Q ss_pred CCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053 6 GERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRK 47 (231)
Q Consensus 6 ~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~ 47 (231)
....-|++++|++++| ..++|+|+||||||||+++|+|..
T Consensus 8 ~~~~~l~~isl~i~~G--~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 8 HHHSSGLVPRGSMNNI--YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --------------CC--CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cccccccCCceecCCC--CEEEEECCCCCCHHHHHHHHHhhC
Confidence 3455689999999999 999999999999999999999976
No 246
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.78 E-value=1.1e-08 Score=88.52 Aligned_cols=85 Identities=22% Similarity=0.324 Sum_probs=53.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccc--------------c---------------cCCCCcceeeeeeeEEeeCCcE
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKA--------------S---------------ADSSGVTKTCEMKTTVLKDGQV 74 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~--------------~---------------~~~~~~t~~~~~~~~~~~~~~~ 74 (231)
.+|+++|.+|+|||||+|.|++...... + ....++|.+........ .+..
T Consensus 7 ~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~-~~~~ 85 (435)
T 1jny_A 7 LNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET-KKYF 85 (435)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC-SSCE
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEec-CCeE
Confidence 7999999999999999999986411000 0 01234555544444444 6778
Q ss_pred EEEEeCCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCC
Q 038053 75 VNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSR 120 (231)
Q Consensus 75 ~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~ 120 (231)
+.++||||..+ +.......+..+|++++|+|++++
T Consensus 86 ~~iiDtpG~~~-----------f~~~~~~~~~~aD~~ilVvDa~~g 120 (435)
T 1jny_A 86 FTIIDAPGHRD-----------FVKNMITGASQADAAILVVSAKKG 120 (435)
T ss_dssp EEECCCSSSTT-----------HHHHHHHTSSCCSEEEEEEECSTT
T ss_pred EEEEECCCcHH-----------HHHHHHhhhhhcCEEEEEEECCCC
Confidence 99999999765 222233456789999999999865
No 247
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.75 E-value=3.3e-09 Score=95.17 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=41.8
Q ss_pred CCCCCCc-ccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccc
Q 038053 2 SSGMGER-VIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKAS 52 (231)
Q Consensus 2 ~~~~~~~-~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~ 52 (231)
++.|++. .++++++ .+.+| .+++|+|+||||||||+++|+|...+..|
T Consensus 98 s~~yg~~~~~l~~vs-~i~~G--e~~~LiG~NGsGKSTLlkiL~Gll~p~~G 146 (607)
T 3bk7_A 98 VHRYGVNAFVLYRLP-IVKDG--MVVGIVGPNGTGKTTAVKILAGQLIPNLC 146 (607)
T ss_dssp EEECSTTCCEEECCC-CCCTT--SEEEEECCTTSSHHHHHHHHTTSSCCCTT
T ss_pred EEEECCCCeeeCCCC-CCCCC--CEEEEECCCCChHHHHHHHHhCCCCCCCC
Confidence 5678776 4899999 99999 99999999999999999999999875443
No 248
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.75 E-value=3.5e-09 Score=84.59 Aligned_cols=40 Identities=20% Similarity=0.119 Sum_probs=25.4
Q ss_pred CCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053 6 GERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRK 47 (231)
Q Consensus 6 ~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~ 47 (231)
++..+|++++|++++| .+|||+|+||||||||++.|.|..
T Consensus 10 ~~~~~l~~isl~i~~g--~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRP--FLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp -------------CCS--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceeecceeccCCCC--EEEEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999999 999999999999999999998854
No 249
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.75 E-value=1.5e-08 Score=92.45 Aligned_cols=93 Identities=27% Similarity=0.401 Sum_probs=58.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhC---CCccccc-------cC------CCCcceeeeeeeEEeeCCcEEEEEeCCCCcCC
Q 038053 23 KRTVVLLGRTGNGKSATGNSILG---RKAFKAS-------AD------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDS 86 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g---~~~~~~~-------~~------~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~ 86 (231)
..+|+|+|.+|+|||||+|.|++ ....... .+ ..++|.........+ .+..+.++||||..+.
T Consensus 10 ~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG~~df 88 (693)
T 2xex_A 10 TRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAW-EGHRVNIIDTPGHVDF 88 (693)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEE-TTEEEEEECCCCCSSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEE-CCeeEEEEECcCCcch
Confidence 37999999999999999999994 3211000 00 123444444444445 6788999999998763
Q ss_pred CCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH
Q 038053 87 SAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA 127 (231)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~ 127 (231)
. .+... .+..+|.+++|+|++++.+.....
T Consensus 89 ~-------~~~~~----~l~~aD~~llVvDa~~g~~~~~~~ 118 (693)
T 2xex_A 89 T-------VEVER----SLRVLDGAVTVLDAQSGVEPQTET 118 (693)
T ss_dssp C-------HHHHH----HHHHCSEEEEEEETTTBSCHHHHH
T ss_pred H-------HHHHH----HHHHCCEEEEEECCCCCCcHHHHH
Confidence 2 12222 224479999999998777766544
No 250
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.73 E-value=3e-08 Score=86.29 Aligned_cols=85 Identities=20% Similarity=0.243 Sum_probs=57.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccc--------------ccc---------------CCCCcceeeeeeeEEeeCCcE
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFK--------------ASA---------------DSSGVTKTCEMKTTVLKDGQV 74 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~--------------~~~---------------~~~~~t~~~~~~~~~~~~~~~ 74 (231)
.+|+++|.+|+|||||+|.|++..... .+. ...++|.+........ .+..
T Consensus 8 ~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~-~~~~ 86 (458)
T 1f60_A 8 INVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET-PKYQ 86 (458)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC-SSEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec-CCce
Confidence 689999999999999999998641000 000 0134555544444444 6678
Q ss_pred EEEEeCCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCC
Q 038053 75 VNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSR 120 (231)
Q Consensus 75 ~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~ 120 (231)
+.++||||..+ +.......+..+|++++|+|++++
T Consensus 87 ~~iiDtPGh~~-----------f~~~~~~~~~~aD~~ilVvda~~g 121 (458)
T 1f60_A 87 VTVIDAPGHRD-----------FIKNMITGTSQADCAILIIAGGVG 121 (458)
T ss_dssp EEEEECCCCTT-----------HHHHHHHSSSCCSEEEEEEECSHH
T ss_pred EEEEECCCcHH-----------HHHHHHhhhhhCCEEEEEEeCCcC
Confidence 99999999543 223334456789999999999854
No 251
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.71 E-value=6.7e-09 Score=93.23 Aligned_cols=70 Identities=13% Similarity=-0.032 Sum_probs=49.7
Q ss_pred CCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCC
Q 038053 3 SGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPG 82 (231)
Q Consensus 3 ~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg 82 (231)
+.|++. .|+.+++++.+| .+++|+|+||||||||+++|+|...+ ..|.+.. .....++++.+.
T Consensus 365 ~~~~~~-~l~~~~~~v~~G--ei~~i~G~NGsGKSTLlk~l~Gl~~p----~~G~I~~----------~~~i~~v~Q~~~ 427 (607)
T 3bk7_A 365 KDYGSF-KLEVEPGEIRKG--EVIGIVGPNGIGKTTFVKMLAGVEEP----TEGKVEW----------DLTVAYKPQYIK 427 (607)
T ss_dssp EECSSC-EEEECCEEEETT--CEEEEECCTTSSHHHHHHHHHTSSCC----SBSCCCC----------CCCEEEECSSCC
T ss_pred EEecce-EEEecccccCCC--CEEEEECCCCCCHHHHHHHHhcCCCC----CceEEEE----------eeEEEEEecCcc
Confidence 345543 466777788999 99999999999999999999999874 3333332 234566777776
Q ss_pred CcCCCCC
Q 038053 83 LFDSSAG 89 (231)
Q Consensus 83 ~~~~~~~ 89 (231)
.....++
T Consensus 428 ~~~~~tv 434 (607)
T 3bk7_A 428 AEYEGTV 434 (607)
T ss_dssp CCCSSBH
T ss_pred CCCCCcH
Confidence 5444444
No 252
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.70 E-value=1.4e-09 Score=105.32 Aligned_cols=79 Identities=20% Similarity=0.084 Sum_probs=56.2
Q ss_pred CCCCCC---cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee---EEeeCCcEE
Q 038053 2 SSGMGE---RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT---TVLKDGQVV 75 (231)
Q Consensus 2 ~~~~~~---~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~ 75 (231)
++.|++ .++|++++|++++| .+++|+|+||||||||+++|+|...+ ..|.+..+..... .........
T Consensus 394 ~~~y~~~~~~~vL~~isl~i~~G--~~~~ivG~sGsGKSTl~~ll~g~~~~----~~G~i~i~g~~i~~~~~~~~r~~i~ 467 (1284)
T 3g5u_A 394 HFSYPSRKEVQILKGLNLKVKSG--QTVALVGNSGCGKSTTVQLMQRLYDP----LDGMVSIDGQDIRTINVRYLREIIG 467 (1284)
T ss_dssp EECCSSTTSCCSEEEEEEEECTT--CEEEEECCSSSSHHHHHHHTTTSSCC----SEEEEEETTEEGGGSCHHHHHHHEE
T ss_pred EEEcCCCCCCcceecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CCeEEEECCEEHHhCCHHHHHhheE
Confidence 456753 46999999999999 99999999999999999999999874 3333332221100 000023478
Q ss_pred EEEeCCCCcCC
Q 038053 76 NVIDTPGLFDS 86 (231)
Q Consensus 76 ~l~Dtpg~~~~ 86 (231)
++.|.|.+++.
T Consensus 468 ~v~Q~~~l~~~ 478 (1284)
T 3g5u_A 468 VVSQEPVLFAT 478 (1284)
T ss_dssp EECSSCCCCSS
T ss_pred EEcCCCccCCc
Confidence 89999988764
No 253
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.69 E-value=2.1e-09 Score=100.49 Aligned_cols=46 Identities=20% Similarity=0.146 Sum_probs=41.5
Q ss_pred CCCCCC--cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053 2 SSGMGE--RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF 49 (231)
Q Consensus 2 ~~~~~~--~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~ 49 (231)
++.|++ +++|++++|++.+| .+++|+|+||||||||+++|+|...+
T Consensus 678 s~~Y~g~~~~iL~dVSl~I~~G--eivaIiGpNGSGKSTLLklLaGll~P 725 (986)
T 2iw3_A 678 EFQYPGTSKPQITDINFQCSLS--SRIAVIGPNGAGKSTLINVLTGELLP 725 (986)
T ss_dssp EECCTTCSSCSEEEEEEEEETT--CEEEECSCCCHHHHHHHHHHTTSSCC
T ss_pred EEEeCCCCceeeeccEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 456754 67899999999999 99999999999999999999999874
No 254
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.69 E-value=4.7e-08 Score=86.81 Aligned_cols=89 Identities=22% Similarity=0.362 Sum_probs=57.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHh---CCCcccc----c-------------cCCCCcceeeeeeeEEeeCCcEEEEEeCCCC
Q 038053 24 RTVVLLGRTGNGKSATGNSIL---GRKAFKA----S-------------ADSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 83 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~---g~~~~~~----~-------------~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~ 83 (231)
.+|||||..++|||||.-+|+ |.....+ + -..-++|.......+.| ++..+.|+||||.
T Consensus 32 RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDTPGH 110 (548)
T 3vqt_A 32 RTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPY-RDRVVNLLDTPGH 110 (548)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEE-TTEEEEEECCCCG
T ss_pred ceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEE-CCEEEEEEeCCCc
Confidence 789999999999999998885 2211000 0 01224455555555667 8899999999998
Q ss_pred cCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHH
Q 038053 84 FDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQE 124 (231)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~ 124 (231)
.+.. .++. .++.-+|.+++|||+..++..+
T Consensus 111 vDF~-------~Ev~----raL~~~DgAvlVvda~~GV~~q 140 (548)
T 3vqt_A 111 QDFS-------EDTY----RVLTAVDSALVVIDAAKGVEAQ 140 (548)
T ss_dssp GGCS-------HHHH----HHHHSCSEEEEEEETTTBSCHH
T ss_pred HHHH-------HHHH----HHHHhcCceEEEeecCCCcccc
Confidence 7643 2333 3445669999999998444433
No 255
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.68 E-value=1.9e-09 Score=104.65 Aligned_cols=78 Identities=19% Similarity=0.127 Sum_probs=57.5
Q ss_pred CCCCC---CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee----eEEeeCCcE
Q 038053 2 SSGMG---ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK----TTVLKDGQV 74 (231)
Q Consensus 2 ~~~~~---~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~----~~~~~~~~~ 74 (231)
+.+|. +.++|+|++|++++| .+|||||++|||||||+++|++... +..|.+..+...- ...+ +...
T Consensus 1083 sf~Y~~~~~~~VL~~isl~I~~G--e~vaIVG~SGsGKSTL~~lL~rl~~----p~~G~I~iDG~di~~i~~~~l-R~~i 1155 (1321)
T 4f4c_A 1083 RFAYPERPEIEILKGLSFSVEPG--QTLALVGPSGCGKSTVVALLERFYD----TLGGEIFIDGSEIKTLNPEHT-RSQI 1155 (1321)
T ss_dssp EECCTTSCSSCSEEEEEEEECTT--CEEEEECSTTSSTTSHHHHHTTSSC----CSSSEEEETTEETTTBCHHHH-HTTE
T ss_pred EEeCCCCCCCccccceeEEECCC--CEEEEECCCCChHHHHHHHHhcCcc----CCCCEEEECCEEhhhCCHHHH-Hhhe
Confidence 44664 346899999999999 9999999999999999999999987 4444444432211 0111 4567
Q ss_pred EEEEeCCCCcCC
Q 038053 75 VNVIDTPGLFDS 86 (231)
Q Consensus 75 ~~l~Dtpg~~~~ 86 (231)
.+++|.|-++++
T Consensus 1156 ~~V~Qdp~LF~g 1167 (1321)
T 4f4c_A 1156 AIVSQEPTLFDC 1167 (1321)
T ss_dssp EEECSSCCCCSE
T ss_pred EEECCCCEeeCc
Confidence 888998887653
No 256
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.66 E-value=9.7e-09 Score=91.05 Aligned_cols=64 Identities=11% Similarity=-0.059 Sum_probs=46.1
Q ss_pred cCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCC
Q 038053 10 IDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAG 89 (231)
Q Consensus 10 ~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~ 89 (231)
.|+++++++.+| .+++|+|+||||||||+++|+|...+ ..|.+.. .....++++.+......++
T Consensus 301 ~l~~~~~~i~~G--e~~~i~G~NGsGKSTLlk~l~Gl~~p----~~G~i~~----------~~~i~~v~Q~~~~~~~~tv 364 (538)
T 1yqt_A 301 RLEVEPGEIKKG--EVIGIVGPNGIGKTTFVKMLAGVEEP----TEGKIEW----------DLTVAYKPQYIKADYEGTV 364 (538)
T ss_dssp EEEECCEEEETT--CEEEEECCTTSSHHHHHHHHHTSSCC----SBCCCCC----------CCCEEEECSSCCCCCSSBH
T ss_pred EEEeCccccCCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CCeEEEE----------CceEEEEecCCcCCCCCcH
Confidence 466677778899 99999999999999999999999874 3333332 2235567776655443343
No 257
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.65 E-value=2.8e-09 Score=99.59 Aligned_cols=42 Identities=21% Similarity=0.242 Sum_probs=39.6
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhC
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILG 45 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g 45 (231)
++.|+++.+|++++|++.+| .+++|+|+||||||||+++|+|
T Consensus 442 s~~yg~~~iL~~vsl~I~~G--e~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 442 SLAYGAKILLNKTQLRLKRA--RRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEEETTEEEEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCEEeEecceEEEcCC--CEEEEECCCCCCHHHHHHHHhC
Confidence 56788899999999999999 9999999999999999999994
No 258
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.65 E-value=2.4e-08 Score=82.23 Aligned_cols=58 Identities=26% Similarity=0.288 Sum_probs=37.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCC----CC--cceeeeeeeEEeeCCcEEEEEeCCCCc
Q 038053 20 SNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADS----SG--VTKTCEMKTTVLKDGQVVNVIDTPGLF 84 (231)
Q Consensus 20 ~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~----~~--~t~~~~~~~~~~~~~~~~~l~Dtpg~~ 84 (231)
.| .+++|+|+||||||||+|+|+ ...+.+|... .| +|+... ... .....+++|+||+.
T Consensus 164 ~G--~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~--~~~--~~~~g~v~d~pg~~ 227 (302)
T 2yv5_A 164 EG--FICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR--LIP--FGKGSFVGDTPGFS 227 (302)
T ss_dssp TT--CEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE--EEE--ETTTEEEESSCCCS
T ss_pred cC--cEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE--EEE--cCCCcEEEECcCcC
Confidence 46 799999999999999999999 7664433211 11 222111 111 12457899999986
No 259
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.64 E-value=9.2e-09 Score=99.61 Aligned_cols=80 Identities=20% Similarity=0.139 Sum_probs=54.6
Q ss_pred CCCCCC---cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcccccc-CCCCcceeeeeeeEEeeCCcEEEE
Q 038053 2 SSGMGE---RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASA-DSSGVTKTCEMKTTVLKDGQVVNV 77 (231)
Q Consensus 2 ~~~~~~---~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l 77 (231)
++.|++ .+++++++|++++| .++||+|+||||||||+++|+|...+..|. ...+.... ....... .....++
T Consensus 1037 ~~~y~~~~~~~~l~~vsl~i~~G--e~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~-~~~~~~~-r~~i~~v 1112 (1284)
T 3g5u_A 1037 VFNYPTRPSIPVLQGLSLEVKKG--QTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIK-QLNVQWL-RAQLGIV 1112 (1284)
T ss_dssp EBCCSCGGGCCSBSSCCEEECSS--SEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTT-SSCHHHH-TTSCEEE
T ss_pred EEECCCCCCCeeecceeEEEcCC--CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcc-cCCHHHH-HhceEEE
Confidence 456653 36899999999999 999999999999999999999998754331 11111110 0000111 4557788
Q ss_pred EeCCCCcC
Q 038053 78 IDTPGLFD 85 (231)
Q Consensus 78 ~Dtpg~~~ 85 (231)
++.|-+++
T Consensus 1113 ~Q~~~l~~ 1120 (1284)
T 3g5u_A 1113 SQEPILFD 1120 (1284)
T ss_dssp ESSCCCCS
T ss_pred CCCCcccc
Confidence 88886654
No 260
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.64 E-value=1.3e-08 Score=83.86 Aligned_cols=62 Identities=26% Similarity=0.220 Sum_probs=39.5
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCC-----C-CcceeeeeeeEEeeCCcEEEEEeCCCCcCC
Q 038053 19 SSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADS-----S-GVTKTCEMKTTVLKDGQVVNVIDTPGLFDS 86 (231)
Q Consensus 19 ~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~-----~-~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~ 86 (231)
..| ..++|+|+||||||||+|+|+|...+.+|... + .+|.... ... .....+++|+||+...
T Consensus 167 l~g--eiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~--~~~--~~~~g~v~q~p~~~~~ 234 (301)
T 1u0l_A 167 LKG--KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQ--LLK--FDFGGYVVDTPGFANL 234 (301)
T ss_dssp HSS--SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCC--EEE--CTTSCEEESSCSSTTC
T ss_pred hcC--CeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeE--EEE--cCCCCEEEECcCCCcc
Confidence 346 79999999999999999999999875444211 1 1222111 111 2345789999998653
No 261
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.63 E-value=1.3e-08 Score=79.17 Aligned_cols=40 Identities=23% Similarity=0.248 Sum_probs=25.6
Q ss_pred CCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 5 MGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 5 ~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
-+..+++++ .++++| ..++|+|+||||||||+|+|+|...
T Consensus 6 ~~~~~~~~~--~~i~~G--ei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 6 PDTKPTARG--QPAAVG--RVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ---------------CC--CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCcCCCC--CCCCCC--CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 355677777 799999 9999999999999999999999864
No 262
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.62 E-value=3.8e-08 Score=78.94 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHh-----CCCcc
Q 038053 24 RTVVLLGRTGNGKSATGNSIL-----GRKAF 49 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~-----g~~~~ 49 (231)
..++++|++|||||||++.|+ |....
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~ 45 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVA 45 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTTTSCEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHCCCeEE
Confidence 689999999999999999998 76543
No 263
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.61 E-value=4.1e-08 Score=85.63 Aligned_cols=86 Identities=21% Similarity=0.244 Sum_probs=48.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCccc--------------cc---------------cCCCCcceeeeeeeEEeeCCc
Q 038053 23 KRTVVLLGRTGNGKSATGNSILGRKAFK--------------AS---------------ADSSGVTKTCEMKTTVLKDGQ 73 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~--------------~~---------------~~~~~~t~~~~~~~~~~~~~~ 73 (231)
..+|+++|..|+|||||++.|++..... .| ....++|.+........ .+.
T Consensus 43 ~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~-~~~ 121 (467)
T 1r5b_A 43 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET-EHR 121 (467)
T ss_dssp EEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC-SSE
T ss_pred eeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec-CCe
Confidence 3689999999999999999997421100 00 00234555444434444 677
Q ss_pred EEEEEeCCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCC
Q 038053 74 VVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSR 120 (231)
Q Consensus 74 ~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~ 120 (231)
.+.++||||..+. ...+...+..+|++++|+|++++
T Consensus 122 ~~~iiDtPGh~~f-----------~~~~~~~~~~aD~~ilVvDa~~g 157 (467)
T 1r5b_A 122 RFSLLDAPGHKGY-----------VTNMINGASQADIGVLVISARRG 157 (467)
T ss_dssp EEEECCCCC----------------------TTSCSEEEEEEECSTT
T ss_pred EEEEEECCCcHHH-----------HHHHHhhcccCCEEEEEEeCCcC
Confidence 8999999997542 22223345788999999999865
No 264
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.61 E-value=1.4e-08 Score=76.66 Aligned_cols=31 Identities=32% Similarity=0.396 Sum_probs=27.9
Q ss_pred CcccCCCCCCceEEEEEcCCCCCHHHHHHHHhC
Q 038053 13 DWKPTSSSNGKRTVVLLGRTGNGKSATGNSILG 45 (231)
Q Consensus 13 ~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g 45 (231)
+++|++++| ..++|+|+||||||||++.+.+
T Consensus 1 ~vsl~i~~g--ei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 1 SMKLTIPEL--SLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp CEEEEEESS--EEEEEECCTTSCHHHHHHHHSC
T ss_pred CccccCCCC--EEEEEECCCCCCHHHHHHHHcc
Confidence 578999999 9999999999999999996553
No 265
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.60 E-value=1.5e-09 Score=84.77 Aligned_cols=42 Identities=21% Similarity=0.289 Sum_probs=36.0
Q ss_pred CCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcccc
Q 038053 3 SGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKA 51 (231)
Q Consensus 3 ~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~ 51 (231)
+.|+++.+++++ ++| .+++|+|+||||||||+++|+|. .+..
T Consensus 8 k~~g~~~~l~~i----~~G--e~~~liG~nGsGKSTLl~~l~Gl-~p~~ 49 (208)
T 3b85_A 8 KTLGQKHYVDAI----DTN--TIVFGLGPAGSGKTYLAMAKAVQ-ALQS 49 (208)
T ss_dssp CSHHHHHHHHHH----HHC--SEEEEECCTTSSTTHHHHHHHHH-HHHT
T ss_pred CCHhHHHHHHhc----cCC--CEEEEECCCCCCHHHHHHHHhcC-CCcC
Confidence 567778888885 678 89999999999999999999999 7433
No 266
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.59 E-value=2.1e-07 Score=84.93 Aligned_cols=91 Identities=24% Similarity=0.337 Sum_probs=57.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCC---cccccc-------C------CCCcceeeeeeeEEeeCC-------cEEEEEeC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRK---AFKASA-------D------SSGVTKTCEMKTTVLKDG-------QVVNVIDT 80 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~---~~~~~~-------~------~~~~t~~~~~~~~~~~~~-------~~~~l~Dt 80 (231)
.+|+|+|..|+|||||++.|+... ...... + ..++|.........+ .+ ..+.++||
T Consensus 11 ~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~-~~~~~~~~~~~i~liDT 89 (704)
T 2rdo_7 11 RNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFW-SGMAKQYEPHRINIIDT 89 (704)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEE-CCccccCCceeEEEEeC
Confidence 789999999999999999996431 110000 0 123444333333444 33 78899999
Q ss_pred CCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHH
Q 038053 81 PGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEE 126 (231)
Q Consensus 81 pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~ 126 (231)
||..+. ..+. ...+..+|.+++|+|++++......
T Consensus 90 PG~~df-------~~~~----~~~l~~aD~aIlVvDa~~gv~~qt~ 124 (704)
T 2rdo_7 90 PGHVDF-------TIEV----ERSMRVLDGAVMVYCAVGGVQPQSE 124 (704)
T ss_pred CCccch-------HHHH----HHHHHHCCEEEEEEeCCCCCcHHHH
Confidence 997652 1122 2333567999999999876655443
No 267
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.58 E-value=6.2e-08 Score=77.78 Aligned_cols=70 Identities=13% Similarity=0.154 Sum_probs=39.8
Q ss_pred CccEEEEEEECCCC--CCHHHHH----------hcCCCCcHHHHHHHHHhh-------HHHHHhhc-c-chhhhhhhhHh
Q 038053 107 GIHAVLVVFSVRSR--FSQEEEA----------ANGGQPYTDEFLAELKRG-------ATELRDQQ-A-EVDSLKEYSKQ 165 (231)
Q Consensus 107 ~~~~il~vvd~~~~--~~~~~~~----------~~~~~~~~~~~~~~~~~~-------~~~l~~~~-~-~i~~is~~~~~ 165 (231)
.+|++++|+|+++. .+..... .....|++ .+.++.|.. ...+.... . +++.+||+++.
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~pii-lV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g~ 240 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIV-VVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNV 240 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEE-EEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTTB
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEE-EEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCCC
Confidence 58999999999865 4433322 11233443 233333311 01222111 2 56779999999
Q ss_pred hHHHHHHHHHHH
Q 038053 166 EISKLMGQMQES 177 (231)
Q Consensus 166 ~i~~l~~~i~~~ 177 (231)
|+++++..+...
T Consensus 241 gv~elf~~l~~~ 252 (255)
T 3c5h_A 241 NVDLAFSTLVQL 252 (255)
T ss_dssp SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999998887654
No 268
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.57 E-value=1.9e-08 Score=97.68 Aligned_cols=78 Identities=21% Similarity=0.158 Sum_probs=55.6
Q ss_pred CCCCC---CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee---eEEeeCCcEE
Q 038053 2 SSGMG---ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK---TTVLKDGQVV 75 (231)
Q Consensus 2 ~~~~~---~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~ 75 (231)
+..|. +.++|+|+||++++| ..++|||++|||||||+++|+|...+ ..|.+..+.... ...+......
T Consensus 422 sF~Y~~~~~~~vL~~isl~i~~G--~~vaivG~sGsGKSTll~ll~~~~~~----~~G~I~idG~~i~~~~~~~lr~~i~ 495 (1321)
T 4f4c_A 422 HFTYPSRPDVPILRGMNLRVNAG--QTVALVGSSGCGKSTIISLLLRYYDV----LKGKITIDGVDVRDINLEFLRKNVA 495 (1321)
T ss_dssp EECCSSSTTSCSEEEEEEEECTT--CEEEEEECSSSCHHHHHHHHTTSSCC----SEEEEEETTEETTTSCHHHHHHHEE
T ss_pred eeeCCCCCCCceeeceEEeecCC--cEEEEEecCCCcHHHHHHHhcccccc----ccCcccCCCccchhccHHHHhhccc
Confidence 34553 467899999999999 99999999999999999999999884 333333322110 0000124578
Q ss_pred EEEeCCCCcC
Q 038053 76 NVIDTPGLFD 85 (231)
Q Consensus 76 ~l~Dtpg~~~ 85 (231)
++.|.|-+++
T Consensus 496 ~v~Q~~~Lf~ 505 (1321)
T 4f4c_A 496 VVSQEPALFN 505 (1321)
T ss_dssp EECSSCCCCS
T ss_pred ccCCcceeeC
Confidence 8889888765
No 269
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.56 E-value=2.4e-08 Score=88.45 Aligned_cols=37 Identities=16% Similarity=0.168 Sum_probs=33.1
Q ss_pred CCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053 11 DGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF 49 (231)
Q Consensus 11 ~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~ 49 (231)
+...++++++| .+++|+|+||||||||+++|+|...+
T Consensus 284 l~~~~~~i~~G--ei~~i~G~nGsGKSTLl~~l~Gl~~p 320 (538)
T 3ozx_A 284 LVVDNGEAKEG--EIIGILGPNGIGKTTFARILVGEITA 320 (538)
T ss_dssp EEECCEEEETT--CEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEeccceECCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 45567778999 99999999999999999999999874
No 270
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.56 E-value=5.3e-07 Score=79.05 Aligned_cols=97 Identities=15% Similarity=0.196 Sum_probs=57.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHh------CCCccccccCCCC---------------cceeeee-------------ee
Q 038053 21 NGKRTVVLLGRTGNGKSATGNSIL------GRKAFKASADSSG---------------VTKTCEM-------------KT 66 (231)
Q Consensus 21 g~~~~i~lvG~~g~GKSTLin~l~------g~~~~~~~~~~~~---------------~t~~~~~-------------~~ 66 (231)
..+.+|+|+|++|||||||++.|+ |........+... ++..... ..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 344799999999999999999999 7654332211100 0000000 00
Q ss_pred EEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCH
Q 038053 67 TVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQ 123 (231)
Q Consensus 67 ~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~ 123 (231)
..+ .+..++|+||||.... ...+..++..... . -.+|.+++|+|+..+.+.
T Consensus 179 ~~~-~~~DvvIIDTpG~~~~---~~~l~~el~~~~~-~-i~pd~vllVvDa~~g~~~ 229 (504)
T 2j37_W 179 FKN-ENFEIIIVDTSGRHKQ---EDSLFEEMLQVAN-A-IQPDNIVYVMDASIGQAC 229 (504)
T ss_dssp HHH-TTCCEEEEEECCCCTT---CHHHHHHHHHHHH-H-HCCSEEEEEEETTCCTTH
T ss_pred HHH-CCCcEEEEeCCCCccc---chhHHHHHHHHHh-h-hcCceEEEEEeccccccH
Confidence 011 4567899999998752 1333344433322 2 268999999999865543
No 271
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.55 E-value=9.1e-09 Score=86.32 Aligned_cols=46 Identities=13% Similarity=0.043 Sum_probs=40.9
Q ss_pred CCCCCC-CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053 1 MSSGMG-ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF 49 (231)
Q Consensus 1 ~~~~~~-~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~ 49 (231)
+++.|+ +..+++++ +++.+| .+++|+|+||||||||+++|+|...+
T Consensus 51 l~~~~~tg~~ald~l-l~i~~G--q~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 51 IDQPFILGVRAIDGL-LTCGIG--QRIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp CCSEECCSCHHHHHH-SCEETT--CEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred cceecCCCCEEEEee-eeecCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 356676 67789999 999999 99999999999999999999998764
No 272
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.53 E-value=1.9e-08 Score=86.93 Aligned_cols=46 Identities=13% Similarity=0.032 Sum_probs=41.2
Q ss_pred CCCCCC-CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053 1 MSSGMG-ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF 49 (231)
Q Consensus 1 ~~~~~~-~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~ 49 (231)
+++.|+ +..+++++ +++.+| .+++|+|+||||||||+++|+|...+
T Consensus 137 v~~~~~tg~~vld~v-l~i~~G--q~~~IvG~sGsGKSTLl~~Iag~~~~ 183 (438)
T 2dpy_A 137 IEHVLDTGVRAINAL-LTVGRG--QRMGLFAGSGVGKSVLLGMMARYTRA 183 (438)
T ss_dssp CCSBCCCSCHHHHHH-SCCBTT--CEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred cceecCCCceEEeee-EEecCC--CEEEEECCCCCCHHHHHHHHhcccCC
Confidence 356776 67799999 999999 99999999999999999999998764
No 273
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.52 E-value=1.1e-07 Score=86.03 Aligned_cols=92 Identities=22% Similarity=0.315 Sum_probs=61.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHh---CCCccccccCCC-------------CcceeeeeeeEEeeCCcEEEEEeCCCCcCCC
Q 038053 24 RTVVLLGRTGNGKSATGNSIL---GRKAFKASADSS-------------GVTKTCEMKTTVLKDGQVVNVIDTPGLFDSS 87 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~---g~~~~~~~~~~~-------------~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~ 87 (231)
.+|||+|+.++|||||...|+ |..........+ |+|.........| ++..+.++||||-.+.
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDTPGH~DF- 80 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW-ENTKVNIIDTPGHMDF- 80 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBC-SSCBCCCEECCCSSST-
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEE-CCEEEEEEECCCcHHH-
Confidence 579999999999999998884 443221111111 3444444444556 7788899999998762
Q ss_pred CCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH
Q 038053 88 AGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA 127 (231)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~ 127 (231)
..+ ...++.-+|.+++|||+..++..+.+.
T Consensus 81 ------~~E----v~raL~~~DgavlVVDa~~GV~~qT~~ 110 (638)
T 3j25_A 81 ------LAE----VYRSLSVLDGAILLISAKDGVQAQTRI 110 (638)
T ss_dssp ------HHH----HHHHHTTCSEEECCEESSCTTCSHHHH
T ss_pred ------HHH----HHHHHHHhCEEEEEEeCCCCCcHHHHH
Confidence 223 334556779999999998666655543
No 274
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.51 E-value=5.4e-08 Score=81.71 Aligned_cols=38 Identities=24% Similarity=0.393 Sum_probs=29.6
Q ss_pred CCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc-cccc
Q 038053 12 GDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA-FKAS 52 (231)
Q Consensus 12 ~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~-~~~~ 52 (231)
+++++.+ +| .+++|+|+||||||||+|+|+|... +..|
T Consensus 207 ~~L~~~~-~G--~~~~lvG~sG~GKSTLln~L~g~~~~~~~G 245 (358)
T 2rcn_A 207 KPLEEAL-TG--RISIFAGQSGVGKSSLLNALLGLQNEILTN 245 (358)
T ss_dssp HHHHHHH-TT--SEEEEECCTTSSHHHHHHHHHCCSSCCCCC
T ss_pred HHHHHhc-CC--CEEEEECCCCccHHHHHHHHhccccccccC
Confidence 3444433 46 7999999999999999999999876 5443
No 275
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.50 E-value=1.2e-07 Score=88.11 Aligned_cols=93 Identities=24% Similarity=0.346 Sum_probs=58.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccccC--------------CCCcceeeeeeeEEee---------------CCcE
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAFKASAD--------------SSGVTKTCEMKTTVLK---------------DGQV 74 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~--------------~~~~t~~~~~~~~~~~---------------~~~~ 74 (231)
.+|+|+|++|+|||||+|.|++......... ..++|.........+. .+..
T Consensus 20 rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 99 (842)
T 1n0u_A 20 RNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFL 99 (842)
T ss_dssp EEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCce
Confidence 6899999999999999999986532111000 1123332222222221 1467
Q ss_pred EEEEeCCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH
Q 038053 75 VNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA 127 (231)
Q Consensus 75 ~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~ 127 (231)
+.++||||..+.. .+. ...+..+|++++|+|+.++.+.....
T Consensus 100 i~liDTPG~~df~-------~~~----~~~l~~aD~ailVvDa~~g~~~qt~~ 141 (842)
T 1n0u_A 100 INLIDSPGHVDFS-------SEV----TAALRVTDGALVVVDTIEGVCVQTET 141 (842)
T ss_dssp EEEECCCCCCSSC-------HHH----HHHHHTCSEEEEEEETTTBSCHHHHH
T ss_pred EEEEECcCchhhH-------HHH----HHHHHhCCEEEEEEeCCCCCCHHHHH
Confidence 8899999987632 122 22335679999999999777766644
No 276
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.49 E-value=2.3e-08 Score=78.14 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGR 46 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~ 46 (231)
..|+++|++|+|||||+|.|++.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 78999999999999999999875
No 277
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.48 E-value=5.8e-08 Score=87.09 Aligned_cols=48 Identities=17% Similarity=0.187 Sum_probs=36.7
Q ss_pred CCCCCCcc-cCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccc
Q 038053 2 SSGMGERV-IDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKAS 52 (231)
Q Consensus 2 ~~~~~~~~-~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~ 52 (231)
+++|+... .+++++ .+.+| .+++|+|+||||||||+|+|+|...+..|
T Consensus 84 ~~~Y~~~~~~l~~l~-~~~~G--ei~~LvGpNGaGKSTLLkiL~Gll~P~~G 132 (608)
T 3j16_B 84 THRYSANSFKLHRLP-TPRPG--QVLGLVGTNGIGKSTALKILAGKQKPNLG 132 (608)
T ss_dssp EEECSTTSCEEECCC-CCCTT--SEEEEECCTTSSHHHHHHHHHTSSCCCTT
T ss_pred EEEECCCceeecCCC-CCCCC--CEEEEECCCCChHHHHHHHHhcCCCCCCc
Confidence 34565443 344444 57889 99999999999999999999999875443
No 278
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.47 E-value=3.6e-08 Score=77.82 Aligned_cols=39 Identities=28% Similarity=0.333 Sum_probs=22.7
Q ss_pred CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHh-CCC
Q 038053 7 ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSIL-GRK 47 (231)
Q Consensus 7 ~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~-g~~ 47 (231)
..+...+++|++++| ..|+|+|+||||||||++.|+ |..
T Consensus 13 ~~~~~~~~sl~v~~G--~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 13 EAQTQGPGSMLKSVG--VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ---------CCEECC--CEEEEECSCC----CHHHHHHC---
T ss_pred hhcccCCCCcccCCC--CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 345678899999999 999999999999999999999 875
No 279
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.43 E-value=1.7e-08 Score=85.20 Aligned_cols=37 Identities=22% Similarity=0.367 Sum_probs=34.2
Q ss_pred CCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053 11 DGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF 49 (231)
Q Consensus 11 ~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~ 49 (231)
++++++.+++| ..++|+|+||||||||+|+|+|...+
T Consensus 165 ~~~l~~~i~~G--~~i~ivG~sGsGKSTll~~l~~~~~~ 201 (361)
T 2gza_A 165 MSFLRRAVQLE--RVIVVAGETGSGKTTLMKALMQEIPF 201 (361)
T ss_dssp HHHHHHHHHTT--CCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred HHHHHHHHhcC--CEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 38899999999 99999999999999999999999873
No 280
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.42 E-value=1e-07 Score=73.51 Aligned_cols=31 Identities=10% Similarity=0.211 Sum_probs=25.1
Q ss_pred ccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053 15 KPTSSSNGKRTVVLLGRTGNGKSATGNSILGRK 47 (231)
Q Consensus 15 ~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~ 47 (231)
|+++++| ..|+|+|+||||||||++.|+|..
T Consensus 1 s~~m~~g--~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 1 SNAMNKA--NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp ----CCC--CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcCCCC--cEEEEECcCCCCHHHHHHHHHhhC
Confidence 3556778 899999999999999999999874
No 281
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.41 E-value=2.2e-08 Score=80.16 Aligned_cols=43 Identities=23% Similarity=0.323 Sum_probs=35.0
Q ss_pred CCCC-CCcccCCCcccCCCC---CCceEEEEEcCCCCCHHHHHHHHhCC
Q 038053 2 SSGM-GERVIDGDWKPTSSS---NGKRTVVLLGRTGNGKSATGNSILGR 46 (231)
Q Consensus 2 ~~~~-~~~~~~~~~~~~i~~---g~~~~i~lvG~~g~GKSTLin~l~g~ 46 (231)
++.| ++..+++++++.+.+ | .+|+|+|++||||||+.+.|.+.
T Consensus 25 ~~~~~~~~~~l~~~~~~i~~~l~g--~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 25 HSPFDEEQQILKKKAEEVKPYLNG--RSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp -------CHHHHHHHHTTHHHHTT--CCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEecCcchhhhhhhhhhhhhcCC--CEEEEECCCCCCHHHHHHHHHHh
Confidence 6778 788899999999999 9 89999999999999999999764
No 282
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.35 E-value=3e-08 Score=82.68 Aligned_cols=37 Identities=24% Similarity=0.255 Sum_probs=34.4
Q ss_pred cCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 10 IDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 10 ~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
+++++++.+++| ..++|+|+||||||||+|+|+|...
T Consensus 160 ~l~~l~~~i~~g--~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 160 AISAIKDGIAIG--KNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp HHHHHHHHHHHT--CCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred HHhhhhhhccCC--CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 567788999999 8999999999999999999999987
No 283
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.33 E-value=3.8e-07 Score=80.75 Aligned_cols=40 Identities=18% Similarity=0.147 Sum_probs=33.1
Q ss_pred cCCCcccCCC-CCCceEEEEEcCCCCCHHHHHHHHhCCCcccc
Q 038053 10 IDGDWKPTSS-SNGKRTVVLLGRTGNGKSATGNSILGRKAFKA 51 (231)
Q Consensus 10 ~~~~~~~~i~-~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~ 51 (231)
-|+...+.++ +| .++||+|+||||||||+++|+|...+..
T Consensus 13 ~f~l~~l~~~~~G--ei~gLiGpNGaGKSTLlkiL~Gl~~p~~ 53 (538)
T 3ozx_A 13 GFKLFGLPTPKNN--TILGVLGKNGVGKTTVLKILAGEIIPNF 53 (538)
T ss_dssp SCEEECCCCCCTT--EEEEEECCTTSSHHHHHHHHTTSSCCCT
T ss_pred ceeecCCCCCCCC--CEEEEECCCCCcHHHHHHHHhcCCCCCC
Confidence 3555666666 67 8999999999999999999999987443
No 284
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.33 E-value=1.4e-07 Score=76.01 Aligned_cols=37 Identities=22% Similarity=0.131 Sum_probs=32.8
Q ss_pred ccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053 9 VIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF 49 (231)
Q Consensus 9 ~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~ 49 (231)
.+|++++ +++| ..++|+|+||||||||+++|+|...+
T Consensus 15 ~vl~~i~--i~~g--~~v~i~Gp~GsGKSTll~~l~g~~~~ 51 (261)
T 2eyu_A 15 DKVLELC--HRKM--GLILVTGPTGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp THHHHGG--GCSS--EEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred HHHHHHh--hCCC--CEEEEECCCCccHHHHHHHHHHhCCC
Confidence 5777887 7888 89999999999999999999998653
No 285
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.32 E-value=3e-07 Score=75.64 Aligned_cols=37 Identities=14% Similarity=0.230 Sum_probs=32.5
Q ss_pred CCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053 11 DGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF 49 (231)
Q Consensus 11 ~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~ 49 (231)
++.+++.+.+| ..++|+|+||||||||++.|+|...+
T Consensus 90 ~~~l~~~~~~g--~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 90 KTELQLGFRKP--AVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp CCSCCCCSSSC--EEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ccccccccCCC--cEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 35688888888 99999999999999999999987653
No 286
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.31 E-value=1.6e-07 Score=81.75 Aligned_cols=42 Identities=17% Similarity=-0.055 Sum_probs=36.2
Q ss_pred CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcccc
Q 038053 7 ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKA 51 (231)
Q Consensus 7 ~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~ 51 (231)
...+++++++++++ ..++|+|+||||||||+++|+|...+..
T Consensus 16 ~~~~l~~vsl~i~~---e~~~liG~nGsGKSTLl~~l~Gl~~p~~ 57 (483)
T 3euj_A 16 NWNGFFARTFDFDE---LVTTLSGGNGAGKSTTMAGFVTALIPDL 57 (483)
T ss_dssp EETTEEEEEEECCS---SEEEEECCTTSSHHHHHHHHHHHHCCCT
T ss_pred ccccccceEEEEcc---ceEEEECCCCCcHHHHHHHHhcCCCCCC
Confidence 34678899999998 4999999999999999999999876543
No 287
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.30 E-value=2.7e-07 Score=82.79 Aligned_cols=44 Identities=18% Similarity=0.289 Sum_probs=36.7
Q ss_pred ccCCCcccCCCCCCc---eEEEEEcCCCCCHHHHHHHHhCCCccccc
Q 038053 9 VIDGDWKPTSSSNGK---RTVVLLGRTGNGKSATGNSILGRKAFKAS 52 (231)
Q Consensus 9 ~~~~~~~~~i~~g~~---~~i~lvG~~g~GKSTLin~l~g~~~~~~~ 52 (231)
..+++++|++.+|.- .+++|+|+||||||||+++|+|...+..|
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G 407 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEG 407 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBC
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence 468899999988721 46999999999999999999999875443
No 288
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.29 E-value=5.1e-07 Score=77.90 Aligned_cols=25 Identities=24% Similarity=0.145 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCC
Q 038053 22 GKRTVVLLGRTGNGKSATGNSILGR 46 (231)
Q Consensus 22 ~~~~i~lvG~~g~GKSTLin~l~g~ 46 (231)
+...|+++|++++|||||+|.|+|.
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhh
Confidence 3468999999999999999999974
No 289
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.27 E-value=2e-07 Score=84.79 Aligned_cols=35 Identities=23% Similarity=0.190 Sum_probs=32.3
Q ss_pred cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 038053 8 RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSIL 44 (231)
Q Consensus 8 ~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~ 44 (231)
..++++++|++++| .+++|+|+||||||||+|+|+
T Consensus 335 ~~~L~~vsl~I~~G--e~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 335 EHNLKNVSVKIPLG--TFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp STTCCSEEEEEETT--SEEEEECSTTSSHHHHHTTTH
T ss_pred ccccccceeEecCC--CEEEEEeeCCCCHHHHHHHHH
Confidence 45799999999999 999999999999999998765
No 290
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.27 E-value=4.6e-07 Score=69.77 Aligned_cols=38 Identities=18% Similarity=0.236 Sum_probs=23.4
Q ss_pred CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 038053 7 ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGR 46 (231)
Q Consensus 7 ~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~ 46 (231)
....+++++|.+.++ ..|+|+|++||||||+.+.|.+.
T Consensus 11 ~~~~~~~~~~~~~~~--~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 11 VDLGTENLYFQSNAM--VRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp -------------CC--CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCC--CEEEEEcCCCCCHHHHHHHHHHH
Confidence 456789999999999 89999999999999999999854
No 291
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.26 E-value=2.8e-07 Score=83.82 Aligned_cols=32 Identities=25% Similarity=0.255 Sum_probs=30.1
Q ss_pred CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHH
Q 038053 7 ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATG 40 (231)
Q Consensus 7 ~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLi 40 (231)
...+|++++|++++| .+++|+|+||||||||+
T Consensus 30 ~~~~L~~vsl~i~~G--e~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRG--KLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp CSTTCCSEEEEEETT--SEEEEECSTTSSHHHHH
T ss_pred CccceeccEEEECCC--CEEEEECCCCCCHHHHh
Confidence 456899999999999 99999999999999997
No 292
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.25 E-value=6.1e-07 Score=68.32 Aligned_cols=28 Identities=21% Similarity=0.400 Sum_probs=25.3
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 038053 17 TSSSNGKRTVVLLGRTGNGKSATGNSILGR 46 (231)
Q Consensus 17 ~i~~g~~~~i~lvG~~g~GKSTLin~l~g~ 46 (231)
.+++| ..|+|+|+||||||||++.|++.
T Consensus 5 ~i~~g--~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 5 DDLGG--NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp -CCTT--EEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCCC--eEEEEECCCCCCHHHHHHHHHhc
Confidence 35678 89999999999999999999997
No 293
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=98.25 E-value=1.7e-07 Score=81.48 Aligned_cols=35 Identities=14% Similarity=0.234 Sum_probs=32.5
Q ss_pred CcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053 13 DWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF 49 (231)
Q Consensus 13 ~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~ 49 (231)
++++.+.+| .+++|+|+||||||||+++|+|...+
T Consensus 130 ~vsl~i~~G--e~v~IvGpnGsGKSTLlr~L~Gl~~p 164 (460)
T 2npi_A 130 KIRMSNFEG--PRVVIVGGSQTGKTSLSRTLCSYALK 164 (460)
T ss_dssp HHHHHSSSC--CCEEEEESTTSSHHHHHHHHHHTTHH
T ss_pred cCceEeCCC--CEEEEECCCCCCHHHHHHHHhCcccc
Confidence 688999999 99999999999999999999998764
No 294
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.24 E-value=3.4e-07 Score=70.59 Aligned_cols=26 Identities=35% Similarity=0.502 Sum_probs=22.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053 20 SNGKRTVVLLGRTGNGKSATGNSILGRK 47 (231)
Q Consensus 20 ~g~~~~i~lvG~~g~GKSTLin~l~g~~ 47 (231)
+| ..++|+|+||||||||++.|+|..
T Consensus 3 ~g--~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GP--RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CC--CEEEEECCCCCCHHHHHHHHHhhC
Confidence 45 789999999999999999999864
No 295
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.24 E-value=1.5e-07 Score=72.48 Aligned_cols=31 Identities=29% Similarity=0.503 Sum_probs=25.4
Q ss_pred cCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 16 PTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 16 ~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
+...+| ..|+|+|+||||||||++.|++...
T Consensus 14 ~~~~~g--~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 14 LYFQGR--KTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp --CCSC--CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCC--CEEEEECcCCCCHHHHHHHHHhhCC
Confidence 344566 8999999999999999999998654
No 296
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.22 E-value=2.3e-06 Score=78.23 Aligned_cols=126 Identities=22% Similarity=0.308 Sum_probs=69.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCC---ccccccC-------------CCCcceeeeeeeEEee------CCcEEEEEeCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRK---AFKASAD-------------SSGVTKTCEMKTTVLK------DGQVVNVIDTP 81 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~---~~~~~~~-------------~~~~t~~~~~~~~~~~------~~~~~~l~Dtp 81 (231)
.+|+|||+-++|||||.-+|+-.. ....... .-++|.........|. ++..+.++|||
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTP 93 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTP 93 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCC
Confidence 689999999999999998886221 1000001 1233333333333331 24678999999
Q ss_pred CCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHHhcCCCCcHHHHHHHHHhhHHHHHhhccchhhhhh
Q 038053 82 GLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEAANGGQPYTDEFLAELKRGATELRDQQAEVDSLKE 161 (231)
Q Consensus 82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~is~ 161 (231)
|-.+. ..++...+ .-+|.+++|||+..++ .+.+..++..++ ...++++.+|+.
T Consensus 94 GHvDF-------~~Ev~~aL----r~~DgavlvVDaveGV----------~~qT~~v~~~a~------~~~lp~i~~iNK 146 (709)
T 4fn5_A 94 GHVDF-------TIEVERSL----RVLDGAVVVFCGTSGV----------EPQSETVWRQAN------KYGVPRIVYVNK 146 (709)
T ss_dssp SCTTC-------HHHHHHHH----HHCSEEEEEEETTTCS----------CHHHHHHHHHHH------HHTCCEEEEEEC
T ss_pred CCccc-------HHHHHHHH----HHhCeEEEEEECCCCC----------chhHHHHHHHHH------HcCCCeEEEEcc
Confidence 98763 23443333 4459999999998443 444444444433 455666665554
Q ss_pred hh--HhhHHHHHHHHHH
Q 038053 162 YS--KQEISKLMGQMQE 176 (231)
Q Consensus 162 ~~--~~~i~~l~~~i~~ 176 (231)
.. +.++.....++..
T Consensus 147 iDr~~a~~~~~~~ei~~ 163 (709)
T 4fn5_A 147 MDRQGANFLRVVEQIKK 163 (709)
T ss_dssp SSSTTCCHHHHHHHHHH
T ss_pred ccccCccHHHHHHHhhh
Confidence 33 3344444444443
No 297
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.22 E-value=5.3e-07 Score=70.75 Aligned_cols=31 Identities=16% Similarity=0.248 Sum_probs=25.5
Q ss_pred cCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 16 PTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 16 ~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
...++| ..++|+|+||||||||+++|+|...
T Consensus 11 ~~~~~G--~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 11 HHMAQG--TLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp ----CC--CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred ccCCCC--cEEEEECCCCCCHHHHHHHHhccCC
Confidence 356788 8999999999999999999999875
No 298
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.22 E-value=6.9e-07 Score=77.78 Aligned_cols=36 Identities=17% Similarity=0.253 Sum_probs=32.6
Q ss_pred CCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 11 DGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 11 ~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
.++++|.+.+| .+|+|+|+||||||||++.|+|...
T Consensus 283 ~~~Isl~i~~G--eVI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 283 DEPLNVEGKAP--FVILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp BCCCCCCSCTT--EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCceeeccCC--eEEEEECCCcccHHHHHHHHHHHhh
Confidence 46789999999 9999999999999999999998754
No 299
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.21 E-value=2.8e-07 Score=71.09 Aligned_cols=45 Identities=11% Similarity=-0.025 Sum_probs=34.6
Q ss_pred CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
++.++.....+...+...+| ..|+|+|+||||||||++.|.+...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~g--~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 6 KWHECSVEKVDRQRLLDQKG--CVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp ----CCCCHHHHHHHHTSCC--EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cccccccCHHHHHHhcCCCC--eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34555566666677777888 9999999999999999999988754
No 300
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.20 E-value=5.8e-07 Score=68.21 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=22.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
+++|+|+||||||||++.|+|...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999999864
No 301
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.18 E-value=9.4e-07 Score=74.30 Aligned_cols=35 Identities=14% Similarity=0.267 Sum_probs=31.3
Q ss_pred CCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 12 GDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 12 ~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
..+++.+.+| .+|+|+|+||||||||++.|+|...
T Consensus 148 ~~l~l~~~~g--~vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 148 TELQLGFRKP--AVIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp CSCCCCSSSS--EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCcceecCCC--eEEEEEcCCCChHHHHHHHHHhhcc
Confidence 4678888888 9999999999999999999998754
No 302
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.17 E-value=1.4e-06 Score=75.00 Aligned_cols=98 Identities=18% Similarity=0.195 Sum_probs=55.4
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCCc------cccccCC-----------------------CCcceeee-e---
Q 038053 18 SSSNGKRTVVLLGRTGNGKSATGNSILGRKA------FKASADS-----------------------SGVTKTCE-M--- 64 (231)
Q Consensus 18 i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~------~~~~~~~-----------------------~~~t~~~~-~--- 64 (231)
+.++.+.+|+++|++|+||||+++.|++... .....+. ++.+.+.. .
T Consensus 94 ~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~ 173 (432)
T 2v3c_C 94 LNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKE 173 (432)
T ss_dssp CCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHH
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHH
Confidence 3434457999999999999999999987421 1100000 00111110 0
Q ss_pred eeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCC
Q 038053 65 KTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRF 121 (231)
Q Consensus 65 ~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~ 121 (231)
..... .+..++++||||.... ...+..++.. + .....+|.+++|+|+..+.
T Consensus 174 ~l~~~-~~~D~vIIDT~G~~~~---~~~l~~~l~~-i-~~~~~~d~vllVvda~~g~ 224 (432)
T 2v3c_C 174 GMEKF-KKADVLIIDTAGRHKE---EKGLLEEMKQ-I-KEITNPDEIILVIDGTIGQ 224 (432)
T ss_dssp HHHTT-SSCSEEEEECCCSCSS---HHHHHHHHHH-T-TSSSCCSEEEEEEEGGGGG
T ss_pred HHHHh-hCCCEEEEcCCCCccc---cHHHHHHHHH-H-HHHhcCcceeEEeeccccH
Confidence 00001 4567889999998752 1223333322 1 2224789999999987444
No 303
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.17 E-value=4.8e-07 Score=68.95 Aligned_cols=25 Identities=28% Similarity=0.507 Sum_probs=23.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
..++|+|+||||||||+++|+|...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5799999999999999999998765
No 304
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.16 E-value=9.4e-07 Score=68.03 Aligned_cols=29 Identities=24% Similarity=0.378 Sum_probs=25.3
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053 17 TSSSNGKRTVVLLGRTGNGKSATGNSILGRK 47 (231)
Q Consensus 17 ~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~ 47 (231)
++.+| ..|+|+|+||||||||++.|.+..
T Consensus 2 ~i~~g--~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 2 DNEKG--LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp --CCC--CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCC--CEEEEECCCCCCHHHHHHHHHHhh
Confidence 56778 899999999999999999999876
No 305
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.15 E-value=1.2e-06 Score=72.46 Aligned_cols=29 Identities=21% Similarity=0.166 Sum_probs=27.0
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 18 SSSNGKRTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 18 i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
+.+| .+|||+|+||||||||++.|+|...
T Consensus 87 ~~~g--~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 87 RPVP--FIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp SCCC--EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCC--EEEEEECCCCchHHHHHHHHHhhcc
Confidence 6778 9999999999999999999999876
No 306
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.14 E-value=4e-07 Score=80.53 Aligned_cols=42 Identities=17% Similarity=0.054 Sum_probs=36.9
Q ss_pred CCCcccCCCccc-CCCCCCceEEEEEcCCCCCHHHHHHH--HhCCCc
Q 038053 5 MGERVIDGDWKP-TSSSNGKRTVVLLGRTGNGKSATGNS--ILGRKA 48 (231)
Q Consensus 5 ~~~~~~~~~~~~-~i~~g~~~~i~lvG~~g~GKSTLin~--l~g~~~ 48 (231)
.++..+|+++++ .+++| ..++|+|+||||||||++. +.|...
T Consensus 22 ~~g~~~Ld~i~~G~i~~G--e~~~l~G~nGsGKSTL~~~~ll~Gl~~ 66 (525)
T 1tf7_A 22 RTMIEGFDDISHGGLPIG--RSTLVSGTSGTGKTLFSIQFLYNGIIE 66 (525)
T ss_dssp CCCCTTHHHHTTSSEETT--SEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred cCCchhHHHhcCCCCCCC--eEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 356789999999 99999 9999999999999999999 566544
No 307
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.13 E-value=1e-06 Score=68.26 Aligned_cols=29 Identities=28% Similarity=0.425 Sum_probs=26.1
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 18 SSSNGKRTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 18 i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
.++| ..|+|+|+||||||||++.|+|...
T Consensus 19 ~~~g--~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 19 QPGR--QLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CCSC--EEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCC--eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4566 9999999999999999999999875
No 308
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.12 E-value=1.1e-06 Score=68.04 Aligned_cols=29 Identities=14% Similarity=0.233 Sum_probs=24.4
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 18 SSSNGKRTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 18 i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
.++| ..|+|+|+||||||||++.|.|...
T Consensus 3 ~~~~--~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 3 APKP--FVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp --CC--EEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CCCc--EEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456 8999999999999999999999743
No 309
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.11 E-value=6.5e-07 Score=73.19 Aligned_cols=39 Identities=13% Similarity=-0.006 Sum_probs=35.8
Q ss_pred cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 8 RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 8 ~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
-.+|+++++.+++| ..++|+|+||+|||||++.|+|...
T Consensus 22 ~~~Ld~i~~~l~~G--~~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 22 CTGINDKTLGARGG--EVIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp CTTHHHHHCSBCTT--CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCC--eEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 35789999999999 9999999999999999999998865
No 310
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.11 E-value=4.2e-06 Score=69.32 Aligned_cols=85 Identities=14% Similarity=0.077 Sum_probs=52.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhh
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLA 104 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~ 104 (231)
+|+++|.+|+|||||++.+++...+... ...+.|........ .....+.+.||||....... .+ .. ...
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~-~~~~~Tig~~~~~v--~~~v~LqIWDTAGQErf~~~--~l---~~---~~y 69 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDT-LYLESTSNPSLEHF--STLIDLAVMELPGQLNYFEP--SY---DS---ERL 69 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGG-TTCCCCCSCCCEEE--CSSSCEEEEECCSCSSSCCC--SH---HH---HHH
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCcc-ceecCeeeeeeEEE--ccEEEEEEEECCCchhccch--hh---hh---hhh
Confidence 4899999999999999998876442211 11222322222222 13467889999998653210 01 01 122
Q ss_pred cCCccEEEEEEECCCC
Q 038053 105 KGGIHAVLVVFSVRSR 120 (231)
Q Consensus 105 ~~~~~~il~vvd~~~~ 120 (231)
+..++++++|+|.+++
T Consensus 70 yr~a~~~IlV~Ditd~ 85 (331)
T 3r7w_B 70 FKSVGALVYVIDSQDE 85 (331)
T ss_dssp HTTCSEEEEECCCSSC
T ss_pred ccCCCEEEEEEECCch
Confidence 4678999999999866
No 311
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.11 E-value=8.8e-07 Score=74.72 Aligned_cols=38 Identities=21% Similarity=0.136 Sum_probs=33.7
Q ss_pred CCCcccCCCC--CCceEEEEEcCCCCCHHHHHHHHhCCCccc
Q 038053 11 DGDWKPTSSS--NGKRTVVLLGRTGNGKSATGNSILGRKAFK 50 (231)
Q Consensus 11 ~~~~~~~i~~--g~~~~i~lvG~~g~GKSTLin~l~g~~~~~ 50 (231)
.+.+++.+.+ + .+++|+|+||||||||+++|+|...+.
T Consensus 158 ~~~v~~~v~~~lg--~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 158 WKFIPKEARPFFA--KTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp GGGSCTTTGGGTC--EEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hhhCCHHHHHhhh--CeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4568899999 8 999999999999999999999987643
No 312
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.10 E-value=1.3e-06 Score=66.09 Aligned_cols=25 Identities=32% Similarity=0.647 Sum_probs=22.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
..++|+|+||||||||++.|++...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 7999999999999999999998653
No 313
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.09 E-value=3.4e-07 Score=80.54 Aligned_cols=39 Identities=18% Similarity=0.135 Sum_probs=34.3
Q ss_pred cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 8 RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 8 ~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
..+++++++.+.+| ..++|+|+||||||||+|+|+|...
T Consensus 247 ~~~l~~l~~~v~~g--~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 247 SGVLAYLWLAIEHK--FSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp HHHHHHHHHHHHTT--CCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred HHHHHHHHHHHhCC--CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34566788888888 7899999999999999999999886
No 314
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.07 E-value=4.4e-07 Score=74.82 Aligned_cols=28 Identities=18% Similarity=0.198 Sum_probs=25.1
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 19 SSNGKRTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 19 ~~g~~~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
.+| .+|||+|+||||||||++.|.|...
T Consensus 78 ~~g--~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIP--YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCC--EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCC--EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 666 8999999999999999999999643
No 315
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.06 E-value=1.5e-05 Score=68.60 Aligned_cols=93 Identities=17% Similarity=0.185 Sum_probs=53.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHh------CCCccccccCCC---------------Ccceeeeee-------------eE
Q 038053 22 GKRTVVLLGRTGNGKSATGNSIL------GRKAFKASADSS---------------GVTKTCEMK-------------TT 67 (231)
Q Consensus 22 ~~~~i~lvG~~g~GKSTLin~l~------g~~~~~~~~~~~---------------~~t~~~~~~-------------~~ 67 (231)
++..|+++|++|+||||++..|+ |..+.....+.. ++....... ..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 34899999999999999999988 443321111110 000000000 00
Q ss_pred EeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCC
Q 038053 68 VLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSR 120 (231)
Q Consensus 68 ~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~ 120 (231)
. ..+..++++||||.... ...+..++..... . ..+|.+++|+|+..+
T Consensus 179 ~-~~~~DvVIIDTaGrl~~---d~~lm~el~~i~~-~-~~pd~vlLVvDA~~g 225 (443)
T 3dm5_A 179 K-SKGVDIIIVDTAGRHKE---DKALIEEMKQISN-V-IHPHEVILVIDGTIG 225 (443)
T ss_dssp H-HTTCSEEEEECCCCSSC---CHHHHHHHHHHHH-H-HCCSEEEEEEEGGGG
T ss_pred H-hCCCCEEEEECCCcccc---hHHHHHHHHHHHH-h-hcCceEEEEEeCCCc
Confidence 0 03467889999997652 2344444444322 2 357899999999744
No 316
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.04 E-value=9.4e-06 Score=66.51 Aligned_cols=32 Identities=22% Similarity=0.304 Sum_probs=26.5
Q ss_pred CC-cccCCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 038053 12 GD-WKPTSSSNGKRTVVLLGRTGNGKSATGNSILGR 46 (231)
Q Consensus 12 ~~-~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~ 46 (231)
.+ +++... + ..|+++|++|+||||+++.|++.
T Consensus 89 ~~~i~~~~~-~--~vi~i~G~~G~GKTT~~~~la~~ 121 (297)
T 1j8m_F 89 EPKVIPDKI-P--YVIMLVGVQGTGKTTTAGKLAYF 121 (297)
T ss_dssp CCCCSCSSS-S--EEEEEECSSCSSTTHHHHHHHHH
T ss_pred ccccccCCC-C--eEEEEECCCCCCHHHHHHHHHHH
Confidence 44 667665 5 89999999999999999999843
No 317
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.04 E-value=1.9e-06 Score=65.07 Aligned_cols=33 Identities=27% Similarity=0.291 Sum_probs=28.8
Q ss_pred CCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053 12 GDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRK 47 (231)
Q Consensus 12 ~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~ 47 (231)
+++++.+.+| ..+|+|+||||||||+.+|.+..
T Consensus 18 ~~~~~~~~~g---~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 18 KKVVIPFSKG---FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SCEEEECCSS---EEEEEECTTSSHHHHHHHHHHHT
T ss_pred ccEEEecCCC---cEEEECCCCCCHHHHHHHHHHHH
Confidence 6778888887 88999999999999999997654
No 318
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.02 E-value=6.5e-07 Score=76.81 Aligned_cols=35 Identities=23% Similarity=0.154 Sum_probs=28.6
Q ss_pred cCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 10 IDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 10 ~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
+|+++ + ..+| ..|+|+|+||||||||+++|+|...
T Consensus 158 ~L~~l-~-~~~g--gii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 158 NFRRL-I-KRPH--GIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp HHHHH-H-TSSS--EEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred HHHHH-H-HhcC--CeEEEECCCCCCHHHHHHHHHhhcC
Confidence 45555 3 3566 7999999999999999999999865
No 319
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.02 E-value=1.6e-06 Score=67.78 Aligned_cols=30 Identities=13% Similarity=0.226 Sum_probs=26.9
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 17 TSSSNGKRTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 17 ~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
.+++| ..++|+|+||||||||++.|+|...
T Consensus 21 gi~~G--~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 21 GIETQ--AITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SEESS--EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCCC--cEEEEECCCCCCHHHHHHHHHHHHh
Confidence 57788 9999999999999999999999543
No 320
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.02 E-value=2.1e-06 Score=81.17 Aligned_cols=44 Identities=23% Similarity=0.236 Sum_probs=35.9
Q ss_pred CCCC-CCcccCCCcccCCCC-------CCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 2 SSGM-GERVIDGDWKPTSSS-------NGKRTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 2 ~~~~-~~~~~~~~~~~~i~~-------g~~~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
++.| ++..++++++|.+.+ | ..++|+|+||+|||||++.| |...
T Consensus 762 ~~~~~~~~~v~ndi~l~~~~~~~~~~~g--~i~~ItGpNgsGKSTlLr~i-Gl~~ 813 (1022)
T 2o8b_B 762 TKTFFGDDFIPNDILIGCEEEEQENGKA--YCVLVTGPNMGGKSTLMRQA-GLLA 813 (1022)
T ss_dssp -----CCCCCCEEEEESCCCSCC---CC--CEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred EEEecCCceEeeeeeeccccccccCCCC--cEEEEECCCCCChHHHHHHH-HHHH
Confidence 3456 667899999999987 7 89999999999999999999 8654
No 321
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.00 E-value=7.7e-07 Score=72.19 Aligned_cols=40 Identities=15% Similarity=0.188 Sum_probs=34.1
Q ss_pred CCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 5 MGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 5 ~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
++...+++++++.+++| ++|+|+||+|||||+++|+|...
T Consensus 30 ~~~~~~l~~~~l~~~~G----vlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 30 VRNPDQFKALGLVTPAG----VLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp HHSHHHHHHTTCCCCSE----EEEESSTTSCHHHHHHHHHHHTT
T ss_pred hhCHHHHHHcCCCCCCe----EEEECCCCCcHHHHHHHHHHHcC
Confidence 34556788889999887 99999999999999999998754
No 322
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.00 E-value=2.6e-06 Score=65.51 Aligned_cols=29 Identities=28% Similarity=0.539 Sum_probs=22.9
Q ss_pred cCCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 038053 16 PTSSSNGKRTVVLLGRTGNGKSATGNSILGR 46 (231)
Q Consensus 16 ~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~ 46 (231)
+...+| ..|+|+|+||||||||++.|.+.
T Consensus 24 m~~~~g--~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 24 MTGEPT--RHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp ----CC--CEEEEECCTTSCHHHHHHHHHHH
T ss_pred hcCCCC--cEEEEECCCCCCHHHHHHHHHHh
Confidence 444566 89999999999999999999865
No 323
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.00 E-value=1.1e-05 Score=75.72 Aligned_cols=36 Identities=17% Similarity=0.050 Sum_probs=32.3
Q ss_pred CCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHH
Q 038053 6 GERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSI 43 (231)
Q Consensus 6 ~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l 43 (231)
+...+++++++.+.+| ..++|+|+||+|||||++.|
T Consensus 647 ~~~~v~ndisl~~~~g--~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 647 EIAFIPNDVYFEKDKQ--MFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp -CCCCCEEEEEETTTB--CEEEEECCTTSSHHHHHHHH
T ss_pred CceeecccceeecCCC--eEEEEECCCCCCHHHHHHHH
Confidence 3456778999999999 89999999999999999999
No 324
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.00 E-value=2.2e-06 Score=79.11 Aligned_cols=39 Identities=18% Similarity=0.165 Sum_probs=34.7
Q ss_pred CCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053 6 GERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRK 47 (231)
Q Consensus 6 ~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~ 47 (231)
++..+++++++. ++| ..++|+|+||+|||||++.|+|..
T Consensus 593 ~~~~vlndisl~-~~g--~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 593 NEPFIANPLNLS-PQR--RMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp SSCCCCEEEEEC-SSS--CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceeeeccccc-CCC--cEEEEECCCCCChHHHHHHHHHHH
Confidence 456788999999 788 899999999999999999999864
No 325
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.00 E-value=2.2e-06 Score=65.66 Aligned_cols=25 Identities=28% Similarity=0.268 Sum_probs=23.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
.+++|+|+||||||||++.|+|...
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 6899999999999999999999865
No 326
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.99 E-value=3.6e-06 Score=66.58 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=25.1
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhC
Q 038053 17 TSSSNGKRTVVLLGRTGNGKSATGNSILG 45 (231)
Q Consensus 17 ~i~~g~~~~i~lvG~~g~GKSTLin~l~g 45 (231)
.+++| ..++|+|+||||||||++.|++
T Consensus 26 gi~~G--~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 26 GFPEG--TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp SEETT--CEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCC--cEEEEEeCCCCCHHHHHHHHHH
Confidence 67889 9999999999999999999993
No 327
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=97.98 E-value=5.6e-07 Score=77.02 Aligned_cols=39 Identities=15% Similarity=0.059 Sum_probs=33.3
Q ss_pred CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 7 ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 7 ~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
+-.+++++++.+.+| +++|+|+||||||||+++|.+...
T Consensus 47 nf~~l~~v~l~~~~G---~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 47 NLATITQLELELGGG---FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp EETTEEEEEEECCSS---EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred cccceeeEEEecCCC---cEEEECCCCCCHHHHHHHHHHHhC
Confidence 345788999999998 899999999999999999866543
No 328
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.98 E-value=1.8e-06 Score=80.59 Aligned_cols=39 Identities=15% Similarity=0.206 Sum_probs=34.9
Q ss_pred CCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 038053 6 GERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGR 46 (231)
Q Consensus 6 ~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~ 46 (231)
++..+++++++.+++| ..++|+||||+|||||++.|.+.
T Consensus 658 ~~~~V~ndvsl~~~~g--~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 658 QDQYVPNNTDLSEDSE--RVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp CSSSCCEEEEECTTSC--CEEEEESCCCHHHHHHHHHHHHH
T ss_pred CCceecccccccCCCC--eEEEEECCCCCchHHHHHHHHHH
Confidence 3567899999999999 99999999999999999998643
No 329
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.96 E-value=1.6e-06 Score=73.44 Aligned_cols=37 Identities=14% Similarity=0.047 Sum_probs=33.4
Q ss_pred ccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053 9 VIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRK 47 (231)
Q Consensus 9 ~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~ 47 (231)
.+++++++.+++| ..++|+|+||+|||||+++|+|..
T Consensus 157 ~~l~~~~~~i~~~--~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 157 DFLKCMVYNIPKK--RYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHHHHHHCCTTC--CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHhcccccCCC--CEEEEECCCCCCHHHHHHHHHhhc
Confidence 5677889999999 899999999999999999999753
No 330
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.95 E-value=4.3e-06 Score=64.80 Aligned_cols=28 Identities=21% Similarity=0.380 Sum_probs=24.9
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 19 SSNGKRTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 19 ~~g~~~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
++| ..|+|+|+||||||||++.|++...
T Consensus 6 ~~g--~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERG--LLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCC--CEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCC--cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 356 8999999999999999999998864
No 331
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.93 E-value=5.1e-06 Score=66.00 Aligned_cols=26 Identities=31% Similarity=0.519 Sum_probs=24.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHh---CCCcc
Q 038053 24 RTVVLLGRTGNGKSATGNSIL---GRKAF 49 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~---g~~~~ 49 (231)
.+|+|+|+||||||||++.|+ |...+
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 799999999999999999999 88654
No 332
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.92 E-value=3.2e-06 Score=63.80 Aligned_cols=31 Identities=16% Similarity=0.238 Sum_probs=26.5
Q ss_pred cCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 16 PTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 16 ~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
+.+++| ..++|+|+||+|||||+++|++...
T Consensus 33 ~~~~~g--~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 33 FNPEEG--KGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp CCGGGC--CEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred ccccCC--CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345566 8899999999999999999998764
No 333
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.90 E-value=5.1e-06 Score=69.80 Aligned_cols=31 Identities=29% Similarity=0.341 Sum_probs=26.8
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053 17 TSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF 49 (231)
Q Consensus 17 ~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~ 49 (231)
...++ ..|+|+|+||||||||+++|+|...+
T Consensus 119 ~~~~~--g~i~I~GptGSGKTTlL~~l~g~~~~ 149 (356)
T 3jvv_A 119 SDVPR--GLVLVTGPTGSGKSTTLAAMLDYLNN 149 (356)
T ss_dssp HHCSS--EEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred HhCCC--CEEEEECCCCCCHHHHHHHHHhcccC
Confidence 45666 79999999999999999999997653
No 334
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.89 E-value=3.2e-05 Score=66.47 Aligned_cols=94 Identities=21% Similarity=0.237 Sum_probs=52.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHh------CCCccccccC---------------CCCcceeeee-------------eeEE
Q 038053 23 KRTVVLLGRTGNGKSATGNSIL------GRKAFKASAD---------------SSGVTKTCEM-------------KTTV 68 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~------g~~~~~~~~~---------------~~~~t~~~~~-------------~~~~ 68 (231)
+..|+++|++||||||++..|+ |........+ ..+....... ....
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~ 176 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV 176 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence 4899999999999999999998 3322111000 0011000000 0000
Q ss_pred eeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCC
Q 038053 69 LKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSR 120 (231)
Q Consensus 69 ~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~ 120 (231)
. .+..++++||||..... ....+..++....... .++.+++|+|+..+
T Consensus 177 ~-~~~DvvIIDTaGr~~~~-~d~~lm~el~~i~~~~--~pd~vlLVlDa~~g 224 (433)
T 3kl4_A 177 K-NKMDIIIVDTAGRHGYG-EETKLLEEMKEMYDVL--KPDDVILVIDASIG 224 (433)
T ss_dssp T-TTCSEEEEEECCCSSSC-CTTHHHHHHHHHHHHH--CCSEEEEEEEGGGG
T ss_pred h-cCCCEEEEECCCCcccc-CCHHHHHHHHHHHHhh--CCcceEEEEeCccc
Confidence 1 25678899999965411 1233444554433322 56899999999743
No 335
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.88 E-value=1.8e-06 Score=68.87 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=32.2
Q ss_pred CCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053 6 GERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRK 47 (231)
Q Consensus 6 ~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~ 47 (231)
+...+++++++.+++| ++|+|+||+|||||+++|++..
T Consensus 36 ~~~~~~~~~~~~~~~g----~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 36 KNPSRFHEMGARIPKG----VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp HCHHHHHHTTCCCCSE----EEEECCTTSSHHHHHHHHHHHT
T ss_pred HCHHHHHHcCCCCCCe----EEEECCCCCCHHHHHHHHHHHh
Confidence 3445677788888877 9999999999999999999864
No 336
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.88 E-value=4.9e-06 Score=63.23 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 038053 24 RTVVLLGRTGNGKSATGNSILG 45 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g 45 (231)
..++|+|+||||||||++.|++
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 6899999999999999999986
No 337
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.87 E-value=4.9e-06 Score=76.48 Aligned_cols=37 Identities=16% Similarity=0.115 Sum_probs=32.6
Q ss_pred CCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053 6 GERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRK 47 (231)
Q Consensus 6 ~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~ 47 (231)
++..+++++++. | ..++|+|+||+|||||++.|+|..
T Consensus 564 ~~~~vl~disl~---g--~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 564 RTEFVPNDLEMA---H--ELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp TSCCCCEEEEES---S--CEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CCceEeeeccCC---C--cEEEEECCCCCChHHHHHHHHhhh
Confidence 345678899998 7 899999999999999999999865
No 338
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.87 E-value=6.6e-06 Score=64.76 Aligned_cols=31 Identities=23% Similarity=0.202 Sum_probs=27.2
Q ss_pred cccCCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 038053 14 WKPTSSSNGKRTVVLLGRTGNGKSATGNSILGR 46 (231)
Q Consensus 14 ~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~ 46 (231)
-..+.++| ..|+|+|++|||||||++.|.+.
T Consensus 13 ~~~~~~~g--~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 13 KYAEGTQP--FTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CBTTTCCC--EEEEEECSTTSCHHHHHHTTGGG
T ss_pred ccCCCCCc--eEEEEECCCCCCHHHHHHHHHhc
Confidence 34466778 99999999999999999999886
No 339
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.86 E-value=5e-06 Score=68.40 Aligned_cols=27 Identities=26% Similarity=0.271 Sum_probs=23.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053 23 KRTVVLLGRTGNGKSATGNSILGRKAF 49 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g~~~~ 49 (231)
+..|+|+|+||||||||++.|+|...+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 389999999999999999999976543
No 340
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.86 E-value=1.1e-05 Score=62.20 Aligned_cols=33 Identities=18% Similarity=0.252 Sum_probs=28.0
Q ss_pred CcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053 13 DWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRK 47 (231)
Q Consensus 13 ~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~ 47 (231)
+.-..++++ ..|+|+|++|||||||.+.|.+..
T Consensus 13 ~~~~~~~~~--~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 13 GLVPRGSKT--FIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp -CCCCSCCC--EEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cccccCCCC--eEEEEECCCCCCHHHHHHHHHHhc
Confidence 444567777 899999999999999999999974
No 341
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.86 E-value=6e-06 Score=69.84 Aligned_cols=30 Identities=27% Similarity=0.329 Sum_probs=27.0
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 17 TSSSNGKRTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 17 ~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
.+.+| ..++|+|+||||||||+++|+|...
T Consensus 132 ~~~~g--~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 132 CHRKM--GLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp TTSSS--EEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred hhcCC--CEEEEECCCCCCHHHHHHHHHhhcC
Confidence 36778 8999999999999999999999765
No 342
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.83 E-value=9.3e-06 Score=64.89 Aligned_cols=29 Identities=14% Similarity=0.298 Sum_probs=25.3
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHh---CCCcc
Q 038053 19 SSNGKRTVVLLGRTGNGKSATGNSIL---GRKAF 49 (231)
Q Consensus 19 ~~g~~~~i~lvG~~g~GKSTLin~l~---g~~~~ 49 (231)
++| .+|+|+|++||||||+++.|. |...+
T Consensus 25 ~~g--~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 25 AIA--PVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp TTS--CEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred CCC--cEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 556 899999999999999999999 76543
No 343
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.83 E-value=2.5e-06 Score=69.08 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=32.2
Q ss_pred CCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053 6 GERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRK 47 (231)
Q Consensus 6 ~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~ 47 (231)
+...+++++++.+++| ++|+|+||+|||||+++|++..
T Consensus 60 ~~~~~l~~~~~~~~~g----vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 60 KNPSRFHEMGARIPKG----VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp HCHHHHHHTTCCCCCE----EEEECCTTSSHHHHHHHHHHHT
T ss_pred HCHHHHHHcCCCCCCe----EEEECCCcChHHHHHHHHHHHc
Confidence 3445677788888877 9999999999999999999865
No 344
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.82 E-value=4.4e-06 Score=65.19 Aligned_cols=38 Identities=13% Similarity=0.126 Sum_probs=31.9
Q ss_pred ccCCCccc-CCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 9 VIDGDWKP-TSSSNGKRTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 9 ~~~~~~~~-~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
..|+++.. .+++| ..++|+|+||+|||||++.|++...
T Consensus 10 ~~Ld~~~~ggi~~G--~~~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 10 LDFDKLIQGGIPQG--FFIALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp HHHHGGGTTSEETT--CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred hHHHHHhcCCCcCC--CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45667666 78899 8999999999999999999996543
No 345
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=97.81 E-value=6.4e-06 Score=69.47 Aligned_cols=32 Identities=25% Similarity=0.133 Sum_probs=26.9
Q ss_pred cCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 038053 10 IDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSIL 44 (231)
Q Consensus 10 ~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~ 44 (231)
.++++++.+++| .++|+|+||||||||+++|+
T Consensus 13 ~~~~~~i~~~~g---~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 13 GLKNVDIEFQSG---ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp TEEEEEEECCSE---EEEEECCTTSSHHHHHHHHH
T ss_pred CccceEEecCCC---eEEEECCCCCCHHHHHHHHH
Confidence 345667788877 57799999999999999998
No 346
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.80 E-value=1e-05 Score=67.23 Aligned_cols=28 Identities=18% Similarity=0.300 Sum_probs=25.1
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 19 SSNGKRTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 19 ~~g~~~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
++| ..++|+|+||||||||++.|+|...
T Consensus 127 ~~g--~vi~lvG~nGaGKTTll~~Lag~l~ 154 (328)
T 3e70_C 127 EKP--YVIMFVGFNGSGKTTTIAKLANWLK 154 (328)
T ss_dssp CSS--EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCC--eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456 9999999999999999999998765
No 347
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.78 E-value=5.6e-06 Score=77.44 Aligned_cols=34 Identities=24% Similarity=0.146 Sum_probs=31.6
Q ss_pred ccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 038053 9 VIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSIL 44 (231)
Q Consensus 9 ~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~ 44 (231)
..|++++++++.| .+++|+|+||||||||++.|+
T Consensus 656 ~~Lk~Vsl~I~~G--eivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 656 HNLRGIDVSFPLG--VLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp TTCCSEEEEEESS--SEEEEECSTTSSHHHHHTTTH
T ss_pred ccccCceEEECCC--CEEEEEcCCCCCHHHHHHHHH
Confidence 3689999999999 999999999999999999864
No 348
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.77 E-value=1.3e-06 Score=72.80 Aligned_cols=44 Identities=18% Similarity=0.205 Sum_probs=34.1
Q ss_pred CCCCcccCCCcccCCCCC-----CceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053 4 GMGERVIDGDWKPTSSSN-----GKRTVVLLGRTGNGKSATGNSILGRK 47 (231)
Q Consensus 4 ~~~~~~~~~~~~~~i~~g-----~~~~i~lvG~~g~GKSTLin~l~g~~ 47 (231)
.+|...+++++++.+..+ .+..++|+|+||+|||||+++|++..
T Consensus 27 ~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 27 FIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 456666777777776542 22579999999999999999999875
No 349
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.77 E-value=1.2e-05 Score=60.17 Aligned_cols=26 Identities=31% Similarity=0.542 Sum_probs=22.6
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 038053 19 SSNGKRTVVLLGRTGNGKSATGNSILGR 46 (231)
Q Consensus 19 ~~g~~~~i~lvG~~g~GKSTLin~l~g~ 46 (231)
.+| ..|+|+|+|||||||+++.|.+.
T Consensus 6 ~~g--~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 6 HDH--HIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TTS--EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCC--cEEEEEcCCCCCHHHHHHHHHHh
Confidence 345 89999999999999999998753
No 350
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.76 E-value=1e-05 Score=60.35 Aligned_cols=25 Identities=32% Similarity=0.593 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
..|+|+|+||||||||.+.|.+...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 6899999999999999999988643
No 351
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.75 E-value=1.2e-05 Score=67.56 Aligned_cols=34 Identities=12% Similarity=-0.008 Sum_probs=30.4
Q ss_pred ccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhC
Q 038053 9 VIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILG 45 (231)
Q Consensus 9 ~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g 45 (231)
..++++++.+++| .++|+|+||+|||||+++|.+
T Consensus 15 ~~~~~~~~~~~~g---~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 15 RNLAPGTLNFPEG---VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp TTCCSEEEECCSE---EEEEECCTTSSHHHHHHHHHH
T ss_pred cceeeeEEEEcCC---eEEEECCCCCChhHHHHHHHH
Confidence 4567889999887 899999999999999999986
No 352
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.75 E-value=1.6e-05 Score=58.33 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=22.7
Q ss_pred cccCCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 038053 14 WKPTSSSNGKRTVVLLGRTGNGKSATGNSIL 44 (231)
Q Consensus 14 ~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~ 44 (231)
..+.+.+| ..+|+|+||+||||++.+|.
T Consensus 17 ~~i~f~~g---~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 17 TVVEFKEG---INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCSE---EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEcCCC---eEEEECCCCCCHHHHHHHHH
Confidence 34455554 88999999999999999976
No 353
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.72 E-value=5.6e-06 Score=77.23 Aligned_cols=34 Identities=24% Similarity=0.191 Sum_probs=31.6
Q ss_pred ccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 038053 9 VIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSIL 44 (231)
Q Consensus 9 ~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~ 44 (231)
..|++++++++.| .+++|+|+||||||||++.|+
T Consensus 638 ~~Lk~Vsl~I~~G--eiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 638 HNLKNVSVKIPLG--TFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp SSCCSEEEEEESS--SEEECCBCTTSSHHHHHTTTH
T ss_pred cccccceEEEcCC--CEEEEEcCCCCCHHHHHHHHH
Confidence 4699999999999 999999999999999999864
No 354
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.72 E-value=1.3e-05 Score=58.83 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=24.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 20 SNGKRTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 20 ~g~~~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
+| ..++|+|+||+|||||+++|++...
T Consensus 35 ~g--~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 35 HG--QFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CC--SEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CC--CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56 7999999999999999999998754
No 355
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.71 E-value=2.4e-05 Score=59.26 Aligned_cols=32 Identities=16% Similarity=0.289 Sum_probs=25.5
Q ss_pred CcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 038053 13 DWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGR 46 (231)
Q Consensus 13 ~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~ 46 (231)
++++..+.+ ..|+|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~--~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKG--INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSS--CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCC--CEEEEECCCCCCHHHHHHHHHHh
Confidence 467777778 89999999999999999999765
No 356
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.67 E-value=2.4e-05 Score=64.70 Aligned_cols=27 Identities=19% Similarity=0.158 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 22 GKRTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 22 ~~~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
.+..|||+|+||||||||++.|.+...
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 457999999999999999999988654
No 357
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.65 E-value=3.7e-06 Score=77.85 Aligned_cols=36 Identities=14% Similarity=0.101 Sum_probs=32.4
Q ss_pred ccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHH-HhCC
Q 038053 9 VIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNS-ILGR 46 (231)
Q Consensus 9 ~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~-l~g~ 46 (231)
..|++++++++.| .+++|+|+||||||||++. |+|.
T Consensus 511 ~~L~~vsl~i~~G--eiv~I~G~nGSGKSTLl~~~L~g~ 547 (842)
T 2vf7_A 511 NNLDNLDVRFPLG--VMTSVTGVSGSGKSTLVSQALVDA 547 (842)
T ss_dssp TTEEEEEEEEESS--SEEEEECCTTSSHHHHCCCCCHHH
T ss_pred cccccceEEEcCC--CEEEEEcCCCcCHHHHHHHHHHHH
Confidence 3689999999999 9999999999999999996 6644
No 358
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.64 E-value=2.8e-05 Score=59.83 Aligned_cols=29 Identities=14% Similarity=0.187 Sum_probs=24.9
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 18 SSSNGKRTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 18 i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
..++ ..|+|+|++|||||||++.|.+...
T Consensus 19 ~~~~--~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 19 TAGR--LVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp CSSS--EEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred cCCC--eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4455 8999999999999999999988653
No 359
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.64 E-value=0.00012 Score=63.00 Aligned_cols=97 Identities=21% Similarity=0.139 Sum_probs=54.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHh-------CCCccccccCCCCc---------------ceeee--------e-e-eE
Q 038053 20 SNGKRTVVLLGRTGNGKSATGNSIL-------GRKAFKASADSSGV---------------TKTCE--------M-K-TT 67 (231)
Q Consensus 20 ~g~~~~i~lvG~~g~GKSTLin~l~-------g~~~~~~~~~~~~~---------------t~~~~--------~-~-~~ 67 (231)
++++.+|+++|++|+||||+...|+ |..+.....+.... ..... . . ..
T Consensus 97 ~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l 176 (433)
T 2xxa_A 97 AQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAAL 176 (433)
T ss_dssp SSSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHH
Confidence 3445799999999999999998888 65433221111000 00000 0 0 00
Q ss_pred -Eee-CCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCC
Q 038053 68 -VLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRF 121 (231)
Q Consensus 68 -~~~-~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~ 121 (231)
... .+..++|+||||..... ..+..++.... ....++.+++|+|+....
T Consensus 177 ~~~~~~~~D~VIIDTpG~l~~~---~~l~~~L~~~~--~~~~p~~vllVvda~~g~ 227 (433)
T 2xxa_A 177 KEAKLKFYDVLLVDTAGRLHVD---EAMMDEIKQVH--ASINPVETLFVVDAMTGQ 227 (433)
T ss_dssp HHHHHTTCSEEEEECCCCCTTC---HHHHHHHHHHH--HHSCCSEEEEEEETTBCT
T ss_pred HHHHhCCCCEEEEECCCccccc---HHHHHHHHHHH--HhhcCcceeEEeecchhH
Confidence 001 35678999999976421 23333333221 124688999999987443
No 360
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.62 E-value=2.1e-05 Score=73.49 Aligned_cols=31 Identities=19% Similarity=0.091 Sum_probs=29.0
Q ss_pred cccCCCcccCCCCCCceEEEEEcCCCCCHHHHH
Q 038053 8 RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATG 40 (231)
Q Consensus 8 ~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLi 40 (231)
...|++++++++.| ..++|+|+||||||||+
T Consensus 597 ~~~Lk~Vsl~I~~G--eiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 597 HNNLKNIDVEIPLG--VFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp STTCCSEEEEEESS--SEEEEECSTTSSHHHHH
T ss_pred cccccccceEEcCC--cEEEEEccCCCChhhhH
Confidence 35699999999999 99999999999999997
No 361
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.62 E-value=9.9e-06 Score=60.93 Aligned_cols=26 Identities=12% Similarity=0.163 Sum_probs=23.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAF 49 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~ 49 (231)
..++|+|++|||||||++.|++...+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 58999999999999999999998653
No 362
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.61 E-value=3.5e-05 Score=59.28 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGR 46 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~ 46 (231)
.+|+|+|++||||||+.+.|.+.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHC
Confidence 57999999999999999999883
No 363
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.61 E-value=1.3e-05 Score=61.06 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 038053 25 TVVLLGRTGNGKSATGNSILGRK 47 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~ 47 (231)
-|+|+||+|||||||++.|+...
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 38899999999999999998654
No 364
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.59 E-value=4.1e-05 Score=63.26 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRK 47 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~ 47 (231)
..++|+|++|||||||+|.|+|..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 689999999999999999999875
No 365
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.59 E-value=3.7e-05 Score=59.15 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=24.0
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053 18 SSSNGKRTVVLLGRTGNGKSATGNSILGRK 47 (231)
Q Consensus 18 i~~g~~~~i~lvG~~g~GKSTLin~l~g~~ 47 (231)
..+| ..|+|+|+||||||||++.|....
T Consensus 9 ~~~~--~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARI--PPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCC--CCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccC--CEEEEECCCCCCHHHHHHHHHHhC
Confidence 3456 899999999999999999998654
No 366
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.58 E-value=3e-05 Score=60.41 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRK 47 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~ 47 (231)
.+|+|+|++||||||+.+.|.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998753
No 367
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.55 E-value=5.1e-05 Score=62.78 Aligned_cols=34 Identities=15% Similarity=0.145 Sum_probs=29.9
Q ss_pred CCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053 12 GDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRK 47 (231)
Q Consensus 12 ~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~ 47 (231)
.++++.+.++ ..|+++|+||+||||++..|++..
T Consensus 96 ~~l~~~~~~~--~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 96 YRIDFKENRL--NIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp CCCCCCTTSC--EEEEEESSTTSSHHHHHHHHHHHH
T ss_pred cCccccCCCC--eEEEEECCCCCCHHHHHHHHHHHH
Confidence 5788888887 999999999999999999988654
No 368
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.54 E-value=5.8e-05 Score=59.37 Aligned_cols=37 Identities=19% Similarity=0.150 Sum_probs=25.3
Q ss_pred cCCCcccCCC---CCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 10 IDGDWKPTSS---SNGKRTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 10 ~~~~~~~~i~---~g~~~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
-+.+.++.+. .| ..|+|.|++||||||+++.|.....
T Consensus 12 ~~~~~~~~~~~~~~g--~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 12 DLGTENLYFQSNAMS--AFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp --------CCCCCCC--EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CccCCCeeEeecCCC--eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3556666665 67 8999999999999999999987643
No 369
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.51 E-value=4.4e-05 Score=63.18 Aligned_cols=30 Identities=23% Similarity=0.186 Sum_probs=26.0
Q ss_pred CcccCCCCCCceEEEEEcCCCCCHHHHHHHHhC
Q 038053 13 DWKPTSSSNGKRTVVLLGRTGNGKSATGNSILG 45 (231)
Q Consensus 13 ~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g 45 (231)
++++.+.+| ..+|+|+||||||||+.+|..
T Consensus 17 ~~~l~~~~g---~~~i~G~NGsGKS~ll~ai~~ 46 (322)
T 1e69_A 17 PSLIGFSDR---VTAIVGPNGSGKSNIIDAIKW 46 (322)
T ss_dssp CEEEECCSS---EEEEECCTTTCSTHHHHHHHH
T ss_pred CeEEecCCC---cEEEECCCCCcHHHHHHHHHH
Confidence 456777776 899999999999999999984
No 370
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.51 E-value=5.3e-05 Score=58.45 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=22.6
Q ss_pred cccCCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 038053 14 WKPTSSSNGKRTVVLLGRTGNGKSATGNSIL 44 (231)
Q Consensus 14 ~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~ 44 (231)
..+.+.+| ..+|+|+||+||||++.+|.
T Consensus 17 ~~i~f~~~---~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 17 TVVEFKEG---INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCSE---EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEeCCC---eEEEEcCCCCCHHHHHHHHH
Confidence 34455554 88999999999999999875
No 371
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.47 E-value=4.6e-05 Score=58.45 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 038053 24 RTVVLLGRTGNGKSATGNSILG 45 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g 45 (231)
.+|+|+|++||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
No 372
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.46 E-value=5.6e-05 Score=58.40 Aligned_cols=34 Identities=9% Similarity=-0.100 Sum_probs=28.2
Q ss_pred cCCCccc-CCCCCCceEEEEEcCCCCCHHHHHHHHhC
Q 038053 10 IDGDWKP-TSSSNGKRTVVLLGRTGNGKSATGNSILG 45 (231)
Q Consensus 10 ~~~~~~~-~i~~g~~~~i~lvG~~g~GKSTLin~l~g 45 (231)
.|+.+-. .+++| ..++|+|+||+|||||++.|++
T Consensus 8 ~LD~~l~Ggi~~G--~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 8 SLDSLLGGGFAPG--VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp HHHHHTTSSBCTT--SEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhhcCCCcCC--EEEEEECCCCCCHHHHHHHHHH
Confidence 3444433 67888 8999999999999999999987
No 373
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.46 E-value=4.2e-05 Score=60.06 Aligned_cols=29 Identities=10% Similarity=0.155 Sum_probs=26.0
Q ss_pred cCCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 038053 16 PTSSSNGKRTVVLLGRTGNGKSATGNSILGR 46 (231)
Q Consensus 16 ~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~ 46 (231)
--+++| ..++|+|+||+|||||+..|++.
T Consensus 19 ggi~~G--~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 19 GGIETG--SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TSEETT--SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcCC--eEEEEECCCCCcHHHHHHHHHHH
Confidence 356788 89999999999999999999984
No 374
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=97.42 E-value=0.00065 Score=58.47 Aligned_cols=25 Identities=24% Similarity=0.199 Sum_probs=21.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHh
Q 038053 20 SNGKRTVVLLGRTGNGKSATGNSIL 44 (231)
Q Consensus 20 ~g~~~~i~lvG~~g~GKSTLin~l~ 44 (231)
..+...|+++|+.++|||+|+|.|+
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred CCceEEEEEECCCCCchhHHHHHHH
Confidence 4445788999999999999999775
No 375
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.41 E-value=5.1e-05 Score=62.04 Aligned_cols=33 Identities=18% Similarity=0.090 Sum_probs=27.9
Q ss_pred CCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 12 GDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 12 ~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
+++++. ++ ..|+++|++|+||||++..|++...
T Consensus 91 ~~i~~~--~~--~~i~i~g~~G~GKTT~~~~la~~~~ 123 (295)
T 1ls1_A 91 RLPVLK--DR--NLWFLVGLQGSGKTTTAAKLALYYK 123 (295)
T ss_dssp CCCCCC--SS--EEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred ceeecC--CC--eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 567777 56 8999999999999999999987643
No 376
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.41 E-value=0.0001 Score=55.04 Aligned_cols=23 Identities=26% Similarity=0.553 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhC
Q 038053 23 KRTVVLLGRTGNGKSATGNSILG 45 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g 45 (231)
+..|+|+|+|||||||+.+.|..
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHh
Confidence 36899999999999999999986
No 377
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.40 E-value=8.3e-05 Score=55.82 Aligned_cols=24 Identities=29% Similarity=0.314 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRK 47 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~ 47 (231)
..|+|+|.+||||||+.+.|.+..
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 899999999999999999998753
No 378
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.40 E-value=7.9e-05 Score=56.10 Aligned_cols=24 Identities=13% Similarity=0.230 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRK 47 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~ 47 (231)
..++|+|++|||||||++.|++..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 589999999999999999999763
No 379
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.40 E-value=8e-06 Score=64.29 Aligned_cols=26 Identities=27% Similarity=0.244 Sum_probs=23.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKAF 49 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~~ 49 (231)
..++|+|+||||||||+++|+|...+
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~~ 53 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALIP 53 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhccccc
Confidence 47899999999999999999998763
No 380
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.40 E-value=9.8e-05 Score=60.68 Aligned_cols=33 Identities=12% Similarity=0.237 Sum_probs=26.6
Q ss_pred cccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 14 WKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 14 ~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
+++...++ ..|+++|+||+||||++..|++...
T Consensus 97 ~~~~~~~~--~vi~ivG~~GsGKTTl~~~LA~~l~ 129 (306)
T 1vma_A 97 LNVPPEPP--FVIMVVGVNGTGKTTSCGKLAKMFV 129 (306)
T ss_dssp CCCCSSSC--EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcccCCCC--eEEEEEcCCCChHHHHHHHHHHHHH
Confidence 34445555 8999999999999999999987643
No 381
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.39 E-value=9.1e-05 Score=60.40 Aligned_cols=27 Identities=26% Similarity=0.267 Sum_probs=24.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 22 GKRTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 22 ~~~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
.+..|+|+|++|||||||.+.|.+...
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 348999999999999999999988764
No 382
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.38 E-value=8.1e-05 Score=57.03 Aligned_cols=23 Identities=35% Similarity=0.700 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGR 46 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~ 46 (231)
..|+|+|++||||||+.+.|.+.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999754
No 383
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.35 E-value=8.5e-05 Score=63.88 Aligned_cols=31 Identities=19% Similarity=0.176 Sum_probs=25.7
Q ss_pred cCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 16 PTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 16 ~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
+.+.++ ..++|+|+||+|||||+++|++...
T Consensus 21 ~~~~~~--~~~~i~G~nG~GKstll~ai~~~~~ 51 (430)
T 1w1w_A 21 VGFGES--NFTSIIGPNGSGKSNMMDAISFVLG 51 (430)
T ss_dssp EECTTC--SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEecCC--CEEEEECCCCCCHHHHHHHHHhhhc
Confidence 345555 7999999999999999999987553
No 384
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.34 E-value=0.00012 Score=54.32 Aligned_cols=23 Identities=17% Similarity=0.131 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGR 46 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~ 46 (231)
..|+|+|++||||||+.+.|...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999754
No 385
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.33 E-value=7.6e-05 Score=65.36 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=32.7
Q ss_pred CCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053 6 GERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRK 47 (231)
Q Consensus 6 ~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~ 47 (231)
.....+.++++.+++| +.|+|+||+|||||+++|.+..
T Consensus 51 ~~~~~~~~lg~~ip~G----vLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 51 KNPSRFHEMGARIPKG----VLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp HCGGGTTTTSCCCCSE----EEEECSSSSSHHHHHHHHHHHT
T ss_pred hchhhhhhccCCCCce----EEEECCCCCCHHHHHHHHHHHh
Confidence 3456788888888887 9999999999999999999864
No 386
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.32 E-value=0.00012 Score=54.13 Aligned_cols=20 Identities=25% Similarity=0.557 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 038053 24 RTVVLLGRTGNGKSATGNSI 43 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l 43 (231)
..|+|+|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999
No 387
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.32 E-value=0.00018 Score=54.34 Aligned_cols=29 Identities=21% Similarity=0.243 Sum_probs=24.8
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053 17 TSSSNGKRTVVLLGRTGNGKSATGNSILGRK 47 (231)
Q Consensus 17 ~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~ 47 (231)
...+| ..|+|+|.+||||||+.+.|....
T Consensus 9 ~~~~~--~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 9 CIEKG--IVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCSCC--EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCC--cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34466 899999999999999999998764
No 388
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.32 E-value=0.00012 Score=55.06 Aligned_cols=22 Identities=27% Similarity=0.596 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 038053 24 RTVVLLGRTGNGKSATGNSILG 45 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g 45 (231)
..|+|+|++||||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 7899999999999999999974
No 389
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=97.31 E-value=7.7e-05 Score=62.15 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=21.4
Q ss_pred cCCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 038053 16 PTSSSNGKRTVVLLGRTGNGKSATGNSIL 44 (231)
Q Consensus 16 ~~i~~g~~~~i~lvG~~g~GKSTLin~l~ 44 (231)
+.+.+| ..+|+|+||+|||||+.+|+
T Consensus 19 i~f~~~---~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 19 VEFKEG---INLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EECCSE---EEEEECCTTSSHHHHHHHHH
T ss_pred EcCCCC---eEEEECCCCCCHHHHHHHHH
Confidence 344555 78999999999999999874
No 390
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.31 E-value=5.5e-05 Score=67.08 Aligned_cols=30 Identities=27% Similarity=0.371 Sum_probs=26.8
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 17 TSSSNGKRTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 17 ~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
.+.+| ..|+|+|+||||||||+++|.+...
T Consensus 365 ~~~~G--~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 365 RERQG--FTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp GGGSC--EEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred ccccc--eEEEEECCCCChHHHHHHHHHHhhc
Confidence 45678 8999999999999999999998865
No 391
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.30 E-value=7.4e-05 Score=60.39 Aligned_cols=29 Identities=17% Similarity=0.185 Sum_probs=25.8
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053 17 TSSSNGKRTVVLLGRTGNGKSATGNSILGRK 47 (231)
Q Consensus 17 ~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~ 47 (231)
.+++| ..++|+|+||+|||||+..|++..
T Consensus 26 gl~~G--~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAG--TVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETT--SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCC--CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46788 899999999999999999998743
No 392
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.29 E-value=8e-05 Score=62.35 Aligned_cols=31 Identities=13% Similarity=0.192 Sum_probs=28.8
Q ss_pred ccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053 15 KPTSSSNGKRTVVLLGRTGNGKSATGNSILGRK 47 (231)
Q Consensus 15 ~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~ 47 (231)
...+++| ..++|+|+||+|||||++.|++..
T Consensus 125 ~ggi~~G--~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 125 GGGIETQ--AITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp TSSEESS--EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cCCCCCC--eEEEEECCCCCCHHHHHHHHHHHh
Confidence 5788999 999999999999999999999876
No 393
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.29 E-value=0.00016 Score=53.94 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRK 47 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~ 47 (231)
..|.|+|++||||||+.+.|....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 689999999999999999998653
No 394
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.28 E-value=6.3e-05 Score=62.81 Aligned_cols=38 Identities=21% Similarity=0.242 Sum_probs=31.8
Q ss_pred cCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053 10 IDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRK 47 (231)
Q Consensus 10 ~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~ 47 (231)
+++.+++.+.+|....|+|+|++|+||||+.+.|++..
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 45667788888855669999999999999999998764
No 395
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.23 E-value=0.00022 Score=53.92 Aligned_cols=22 Identities=14% Similarity=0.401 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 038053 24 RTVVLLGRTGNGKSATGNSILG 45 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g 45 (231)
..|.|+|++||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 7899999999999999999864
No 396
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.22 E-value=0.00019 Score=55.75 Aligned_cols=24 Identities=17% Similarity=0.322 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCC
Q 038053 23 KRTVVLLGRTGNGKSATGNSILGR 46 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g~ 46 (231)
..+|+|+|.+|||||||++.+++.
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 379999999999999999999865
No 397
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.22 E-value=0.00019 Score=55.48 Aligned_cols=30 Identities=20% Similarity=0.195 Sum_probs=25.4
Q ss_pred cCCCCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053 16 PTSSSNGKRTVVLLGRTGNGKSATGNSILGRK 47 (231)
Q Consensus 16 ~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~ 47 (231)
+.+.+| ..|+|+|.+||||||+.+.|.+..
T Consensus 20 ~~~~~~--~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 20 LRNQRG--LTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp HHTSSC--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCCC--CEEEEECCCCCCHHHHHHHHHHHh
Confidence 345667 899999999999999999997653
No 398
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.21 E-value=3.5e-05 Score=69.19 Aligned_cols=42 Identities=26% Similarity=0.417 Sum_probs=37.6
Q ss_pred CCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 5 MGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 5 ~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
+|...+++.+++.+.+| ..++|+|+||+|||||+++|.+...
T Consensus 44 ~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 44 IGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp CSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred ECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 56777888889999999 8999999999999999999999764
No 399
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.20 E-value=0.00022 Score=53.74 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGR 46 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~ 46 (231)
..|+|.|++||||||+.+.|...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999753
No 400
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.17 E-value=0.00017 Score=58.89 Aligned_cols=25 Identities=32% Similarity=0.500 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
.+|+|+|+||+||||++..|++...
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 7999999999999999999986543
No 401
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.17 E-value=0.00026 Score=53.07 Aligned_cols=22 Identities=27% Similarity=0.581 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 038053 24 RTVVLLGRTGNGKSATGNSILG 45 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g 45 (231)
..|+|+|++||||||+.+.|..
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 6899999999999999999983
No 402
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.17 E-value=0.00023 Score=54.21 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 038053 25 TVVLLGRTGNGKSATGNSILGR 46 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~ 46 (231)
.|+|+|.+||||||+.+.|...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6999999999999999999864
No 403
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.16 E-value=3.9e-05 Score=63.81 Aligned_cols=43 Identities=14% Similarity=0.191 Sum_probs=34.1
Q ss_pred CCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053 5 MGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRK 47 (231)
Q Consensus 5 ~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~ 47 (231)
+|...+++.++..+.+|....+.|.|+||+||||+++++++..
T Consensus 28 ~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 28 YGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp CSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 4556667777777888843349999999999999999998764
No 404
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.14 E-value=0.00026 Score=53.23 Aligned_cols=23 Identities=26% Similarity=0.546 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGR 46 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~ 46 (231)
..|+|+|++||||||+.+.|...
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999643
No 405
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.13 E-value=0.00029 Score=53.18 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 038053 24 RTVVLLGRTGNGKSATGNSILG 45 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g 45 (231)
..|+|+|.+||||||+.+.|..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 7899999999999999998864
No 406
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.10 E-value=0.00023 Score=56.55 Aligned_cols=23 Identities=30% Similarity=0.612 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 038053 25 TVVLLGRTGNGKSATGNSILGRK 47 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~ 47 (231)
-+.|+|+||+|||||+++|.+..
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHc
Confidence 49999999999999999998754
No 407
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.10 E-value=0.00035 Score=53.25 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRK 47 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~ 47 (231)
..|+|+|++||||||+.+.|....
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 789999999999999999998754
No 408
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.10 E-value=0.00031 Score=59.32 Aligned_cols=33 Identities=12% Similarity=0.119 Sum_probs=30.1
Q ss_pred CcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053 13 DWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRK 47 (231)
Q Consensus 13 ~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~ 47 (231)
|+.+++.+| .+++|+|++|+|||||++.|.+..
T Consensus 166 D~~~pi~rG--Qr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGRG--QRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBTT--CEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecCC--cEEEEecCCCCChhHHHHHHHHHH
Confidence 788999999 999999999999999999988653
No 409
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.09 E-value=0.00033 Score=53.29 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCC
Q 038053 22 GKRTVVLLGRTGNGKSATGNSILGR 46 (231)
Q Consensus 22 ~~~~i~lvG~~g~GKSTLin~l~g~ 46 (231)
.+..|+|+|++||||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3479999999999999999999865
No 410
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.09 E-value=0.00045 Score=51.54 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRK 47 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~ 47 (231)
..+.|.|++|+|||||++.+....
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHH
Confidence 678999999999999999998764
No 411
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.08 E-value=0.00031 Score=52.92 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRK 47 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~ 47 (231)
..|+|+|++||||||+.+.|....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999997643
No 412
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.08 E-value=0.00036 Score=53.40 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGR 46 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~ 46 (231)
..|+|.|++||||||+.+.|...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 78999999999999999999754
No 413
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.07 E-value=0.00024 Score=56.59 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGR 46 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~ 46 (231)
..|.|+|+|||||||+.+.|...
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 89999999999999999998754
No 414
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.05 E-value=0.00037 Score=52.72 Aligned_cols=22 Identities=23% Similarity=0.521 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 038053 24 RTVVLLGRTGNGKSATGNSILG 45 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g 45 (231)
..|+|+|++||||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 7999999999999999999864
No 415
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.05 E-value=0.0004 Score=53.77 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 038053 24 RTVVLLGRTGNGKSATGNSILG 45 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g 45 (231)
..|+|.|.+||||||+.+.|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 7899999999999999999976
No 416
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.04 E-value=4.3e-05 Score=67.75 Aligned_cols=36 Identities=19% Similarity=0.208 Sum_probs=29.2
Q ss_pred cCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 10 IDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 10 ~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
++.++++.+ +| ..++|+|+||+|||||+++|.+...
T Consensus 98 ~l~~~~~~~-~g--~~vll~Gp~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 98 AVQKLTKSL-KG--PILCLAGPPGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp HHHHHSSSC-CS--CEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred HHHHhcccC-CC--CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 445566666 56 7999999999999999999988653
No 417
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.03 E-value=0.00054 Score=52.29 Aligned_cols=25 Identities=20% Similarity=0.416 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCC
Q 038053 22 GKRTVVLLGRTGNGKSATGNSILGR 46 (231)
Q Consensus 22 ~~~~i~lvG~~g~GKSTLin~l~g~ 46 (231)
.+..|+|+|.+||||||+.+.|...
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3478999999999999999998743
No 418
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.02 E-value=0.00033 Score=52.29 Aligned_cols=23 Identities=26% Similarity=0.554 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGR 46 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~ 46 (231)
.+|+|+|++||||||+.+.|...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 36999999999999999999754
No 419
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.02 E-value=0.00023 Score=62.74 Aligned_cols=32 Identities=16% Similarity=0.197 Sum_probs=28.4
Q ss_pred ccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 15 KPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 15 ~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
...+++| ..++|+|+||+|||||++.|+|...
T Consensus 275 ~g~i~~G--~i~~i~G~~GsGKSTLl~~l~g~~~ 306 (525)
T 1tf7_A 275 GGGFFKD--SIILATGATGTGKTLLVSRFVENAC 306 (525)
T ss_dssp TSSEESS--CEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCCCC--cEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3478888 8999999999999999999998754
No 420
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.00 E-value=0.00044 Score=53.11 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGR 46 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~ 46 (231)
..|+|.|.+||||||+.+.|...
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 79999999999999999999753
No 421
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.99 E-value=0.00044 Score=53.03 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGR 46 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~ 46 (231)
..|+|.|.+||||||+.+.|...
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 79999999999999999999753
No 422
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.98 E-value=0.00013 Score=64.25 Aligned_cols=33 Identities=18% Similarity=0.165 Sum_probs=28.6
Q ss_pred ccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 038053 9 VIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSIL 44 (231)
Q Consensus 9 ~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~ 44 (231)
..++++++.+.+| ..+|+|+||+|||||+.+|.
T Consensus 49 ~~~~~~~l~f~~g---~n~i~G~NGaGKS~lleAl~ 81 (517)
T 4ad8_A 49 ATITQLELELGGG---FCAFTGETGAGKSIIVDALG 81 (517)
T ss_dssp TTBSCEEEECCCS---EEEEEESHHHHHHHHTHHHH
T ss_pred cceeeEEEecCCC---eEEEEcCCCCCHHHHHHHHH
Confidence 3567788888887 88999999999999999984
No 423
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.98 E-value=0.00041 Score=56.40 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhC
Q 038053 23 KRTVVLLGRTGNGKSATGNSILG 45 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g 45 (231)
+..|.|+|+|||||||+.+.|..
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 38999999999999999999974
No 424
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.98 E-value=0.00049 Score=51.46 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGR 46 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~ 46 (231)
..++|+|++|||||||++.|+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 68999999999999999998875
No 425
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.98 E-value=0.00044 Score=55.08 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGR 46 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~ 46 (231)
..|+|+|+||||||||.+.|++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 47899999999999999999754
No 426
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.97 E-value=0.00043 Score=53.37 Aligned_cols=21 Identities=33% Similarity=0.683 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 038053 25 TVVLLGRTGNGKSATGNSILG 45 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g 45 (231)
+|+|+|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999954
No 427
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.97 E-value=0.00049 Score=53.36 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGR 46 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~ 46 (231)
..|+|+|++||||||+.+.|...
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999999998653
No 428
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.97 E-value=0.00043 Score=52.47 Aligned_cols=23 Identities=17% Similarity=0.586 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGR 46 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~ 46 (231)
..|+|+|++||||||+.+.|...
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999653
No 429
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.97 E-value=0.0005 Score=52.50 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhC
Q 038053 23 KRTVVLLGRTGNGKSATGNSILG 45 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g 45 (231)
+..|+|+|++||||||+.+.|..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 37999999999999999999864
No 430
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.96 E-value=0.00048 Score=54.27 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 038053 24 RTVVLLGRTGNGKSATGNSILG 45 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g 45 (231)
..|+|+|++||||||+.+.|..
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999983
No 431
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.96 E-value=0.00053 Score=53.86 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=22.5
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhC
Q 038053 18 SSSNGKRTVVLLGRTGNGKSATGNSILG 45 (231)
Q Consensus 18 i~~g~~~~i~lvG~~g~GKSTLin~l~g 45 (231)
...+ .+|+|+|++||||||+.+.|.+
T Consensus 13 ~~~~--~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKT--IQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCC--CEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCC--cEEEEECCCCCCHHHHHHHHHH
Confidence 3455 8999999999999999999986
No 432
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.95 E-value=0.00051 Score=51.71 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 038053 24 RTVVLLGRTGNGKSATGNSILG 45 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g 45 (231)
..|+|+|.+||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999864
No 433
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.95 E-value=0.00045 Score=53.85 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 038053 24 RTVVLLGRTGNGKSATGNSILG 45 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g 45 (231)
..|+|+|++||||||+.+.|..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 7899999999999999999974
No 434
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.94 E-value=0.00028 Score=59.50 Aligned_cols=29 Identities=21% Similarity=0.402 Sum_probs=23.7
Q ss_pred CcccCCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 038053 13 DWKPTSSSNGKRTVVLLGRTGNGKSATGNSIL 44 (231)
Q Consensus 13 ~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~ 44 (231)
+..+.+.+| ..+|+|+||+||||++.+|+
T Consensus 18 ~~~i~f~~g---l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 18 NSRIKFEKG---IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEECCSE---EEEEEECTTSSHHHHHHHHH
T ss_pred ceEEecCCC---eEEEECCCCCCHHHHHHHHH
Confidence 345556665 89999999999999999875
No 435
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.94 E-value=0.00042 Score=53.84 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGR 46 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~ 46 (231)
..|+|+|++||||||+.+.|...
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999753
No 436
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.94 E-value=0.0003 Score=60.33 Aligned_cols=32 Identities=19% Similarity=0.097 Sum_probs=26.6
Q ss_pred CCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053 12 GDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRK 47 (231)
Q Consensus 12 ~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~ 47 (231)
.++++. ++ ..|+++|++|+||||++..|++..
T Consensus 91 ~~i~l~--~~--~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 91 RLPVLK--DR--NLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp CCCCCC--SS--EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccccCC--CC--eEEEEECCCCCCHHHHHHHHHHHH
Confidence 566666 45 799999999999999999988654
No 437
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.93 E-value=0.00049 Score=53.10 Aligned_cols=21 Identities=38% Similarity=0.737 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 038053 25 TVVLLGRTGNGKSATGNSILG 45 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g 45 (231)
+|+|+|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999964
No 438
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.93 E-value=0.00057 Score=54.08 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 038053 24 RTVVLLGRTGNGKSATGNSILG 45 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g 45 (231)
.+|+|+|++||||||+.+.|..
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 8999999999999999999974
No 439
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.93 E-value=0.00043 Score=52.00 Aligned_cols=22 Identities=36% Similarity=0.602 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 038053 24 RTVVLLGRTGNGKSATGNSILG 45 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g 45 (231)
.+|+|+|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 440
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.92 E-value=0.00019 Score=55.26 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 038053 25 TVVLLGRTGNGKSATGNSILGRK 47 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~ 47 (231)
.|+|+|++||||||+++.|....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998654
No 441
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.90 E-value=0.00043 Score=51.80 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=16.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGR 46 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~ 46 (231)
..|+|.|.+||||||+.+.|...
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 78999999999999999999743
No 442
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.86 E-value=0.00062 Score=51.49 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 038053 25 TVVLLGRTGNGKSATGNSILGR 46 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~ 46 (231)
.|+|.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999754
No 443
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.86 E-value=0.00069 Score=54.10 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 038053 24 RTVVLLGRTGNGKSATGNSILG 45 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g 45 (231)
..|+|+|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 7899999999999999999874
No 444
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.86 E-value=0.00061 Score=50.44 Aligned_cols=23 Identities=17% Similarity=0.484 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGR 46 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~ 46 (231)
..|+|+|.+||||||+.+.|...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998653
No 445
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.86 E-value=0.00031 Score=55.09 Aligned_cols=29 Identities=24% Similarity=0.321 Sum_probs=24.0
Q ss_pred ccCCCCCCceEEEEEcCCCCCHHHHHHHHhC
Q 038053 15 KPTSSSNGKRTVVLLGRTGNGKSATGNSILG 45 (231)
Q Consensus 15 ~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g 45 (231)
.--+++| ..++|+|+||+|||||+..++.
T Consensus 17 ~gGl~~G--~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 17 HGGIPER--NVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp TTSEETT--CEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCCCC--cEEEEECCCCCCHHHHHHHHHH
Confidence 4567888 8999999999999999765543
No 446
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.84 E-value=0.00067 Score=51.11 Aligned_cols=22 Identities=18% Similarity=0.400 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 038053 25 TVVLLGRTGNGKSATGNSILGR 46 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~ 46 (231)
.|+|.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999753
No 447
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.83 E-value=0.00071 Score=49.88 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 038053 25 TVVLLGRTGNGKSATGNSILG 45 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g 45 (231)
+|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999865
No 448
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.78 E-value=0.00027 Score=58.77 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGR 46 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~ 46 (231)
..+.|.|+||+|||||++.|++.
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 44999999999999999999883
No 449
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.77 E-value=0.001 Score=53.80 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=22.0
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHh
Q 038053 20 SNGKRTVVLLGRTGNGKSATGNSIL 44 (231)
Q Consensus 20 ~g~~~~i~lvG~~g~GKSTLin~l~ 44 (231)
++.+..|+|.|.+||||||+.+.|.
T Consensus 72 ~~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 72 PSGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CTTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH
Confidence 3445799999999999999999997
No 450
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.75 E-value=0.00077 Score=52.00 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 038053 25 TVVLLGRTGNGKSATGNSILG 45 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g 45 (231)
+|+|+|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 451
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.74 E-value=0.00086 Score=52.22 Aligned_cols=21 Identities=29% Similarity=0.700 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 038053 25 TVVLLGRTGNGKSATGNSILG 45 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g 45 (231)
.|+|+|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 452
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.73 E-value=0.00061 Score=57.99 Aligned_cols=30 Identities=17% Similarity=0.203 Sum_probs=24.4
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHh--CCCc
Q 038053 17 TSSSNGKRTVVLLGRTGNGKSATGNSIL--GRKA 48 (231)
Q Consensus 17 ~i~~g~~~~i~lvG~~g~GKSTLin~l~--g~~~ 48 (231)
-+++| ..++|+|+||+|||||+..|+ +...
T Consensus 174 GI~~G--ei~~I~G~sGsGKTTLl~~la~~~~~p 205 (400)
T 3lda_A 174 GVETG--SITELFGEFRTGKSQLCHTLAVTCQIP 205 (400)
T ss_dssp SEETT--SEEEEEESTTSSHHHHHHHHHHHTTSC
T ss_pred CcCCC--cEEEEEcCCCCChHHHHHHHHHHhccC
Confidence 46678 899999999999999999553 4443
No 453
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.73 E-value=0.00097 Score=49.27 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGR 46 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~ 46 (231)
.+|+|.|.+||||||+.+.|...
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999998653
No 454
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.69 E-value=0.0011 Score=53.88 Aligned_cols=23 Identities=26% Similarity=0.553 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhC
Q 038053 23 KRTVVLLGRTGNGKSATGNSILG 45 (231)
Q Consensus 23 ~~~i~lvG~~g~GKSTLin~l~g 45 (231)
+..|.|+|+|||||||+.+.|..
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999985
No 455
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.69 E-value=0.00037 Score=60.65 Aligned_cols=34 Identities=18% Similarity=0.325 Sum_probs=26.8
Q ss_pred cCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053 10 IDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRK 47 (231)
Q Consensus 10 ~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~ 47 (231)
.+.++.+.++.| |.|+|+||+|||||+++|.+..
T Consensus 40 ~~~~~g~~~p~g----vLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 40 KFNRIGARMPKG----ILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp HHHTTTCCCCSE----EEEECCTTSSHHHHHHHHHHHH
T ss_pred HHhhcCCCCCCe----EEEECCCCCCHHHHHHHHHHHc
Confidence 344555556655 8899999999999999999854
No 456
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.69 E-value=0.0014 Score=50.99 Aligned_cols=24 Identities=21% Similarity=0.524 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRK 47 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~ 47 (231)
.+|.|+|+|||||+|....|+...
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 688899999999999999988543
No 457
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.67 E-value=0.0012 Score=52.43 Aligned_cols=25 Identities=24% Similarity=0.223 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCC
Q 038053 22 GKRTVVLLGRTGNGKSATGNSILGR 46 (231)
Q Consensus 22 ~~~~i~lvG~~g~GKSTLin~l~g~ 46 (231)
.+.+|+|.|++||||||+.+.|...
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3479999999999999999998653
No 458
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.66 E-value=0.00097 Score=51.63 Aligned_cols=22 Identities=27% Similarity=0.518 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 038053 24 RTVVLLGRTGNGKSATGNSILG 45 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g 45 (231)
..|+|+|++||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999964
No 459
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.65 E-value=0.00091 Score=54.57 Aligned_cols=28 Identities=21% Similarity=0.392 Sum_probs=24.1
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053 18 SSSNGKRTVVLLGRTGNGKSATGNSILGRK 47 (231)
Q Consensus 18 i~~g~~~~i~lvG~~g~GKSTLin~l~g~~ 47 (231)
+.++ ..|.|.|+||+|||||+++|.+..
T Consensus 46 ~~~~--~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 46 MTPS--KGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCC--SEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCC--ceEEEECCCCcCHHHHHHHHHHHh
Confidence 4555 679999999999999999998764
No 460
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.65 E-value=0.0012 Score=51.65 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGR 46 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~ 46 (231)
..|+|+|.+||||||+.+.|...
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999753
No 461
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.64 E-value=0.0012 Score=50.26 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGR 46 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~ 46 (231)
..|+|.|++||||||+.+.|...
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 38999999999999999999763
No 462
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.63 E-value=0.00097 Score=61.82 Aligned_cols=30 Identities=20% Similarity=0.419 Sum_probs=26.1
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 17 TSSSNGKRTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 17 ~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
.+.++ ..|+|+|+||+|||||+++|++...
T Consensus 234 ~i~~~--~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 234 GVKPP--RGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp CCCCC--CEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred CCCCC--CeEEEECcCCCCHHHHHHHHHHHcC
Confidence 45666 7899999999999999999998753
No 463
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.62 E-value=0.0042 Score=51.49 Aligned_cols=25 Identities=32% Similarity=0.493 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
..|+|+|++|||||||...|.....
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCC
Confidence 6899999999999999999998754
No 464
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.62 E-value=0.0012 Score=50.96 Aligned_cols=23 Identities=30% Similarity=0.562 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 038053 25 TVVLLGRTGNGKSATGNSILGRK 47 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~ 47 (231)
+|.|+|+|||||+|....|+...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998653
No 465
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.62 E-value=0.0037 Score=53.71 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRK 47 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~ 47 (231)
.-|.|.||||+|||+|.++|++..
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 459999999999999999998764
No 466
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.62 E-value=0.002 Score=54.77 Aligned_cols=24 Identities=25% Similarity=0.472 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 25 TVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 25 ~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
-|.|.||||+|||+|.++|++...
T Consensus 184 GvLL~GPPGTGKTllAkAiA~e~~ 207 (405)
T 4b4t_J 184 GVILYGPPGTGKTLLARAVAHHTD 207 (405)
T ss_dssp CEEEESCSSSSHHHHHHHHHHHHT
T ss_pred ceEEeCCCCCCHHHHHHHHHHhhC
Confidence 399999999999999999987643
No 467
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.60 E-value=0.0012 Score=50.27 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGR 46 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~ 46 (231)
..|+|+|.+||||||+.+.|...
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 68999999999999999998754
No 468
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.58 E-value=0.0019 Score=55.21 Aligned_cols=27 Identities=30% Similarity=0.263 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053 21 NGKRTVVLLGRTGNGKSATGNSILGRK 47 (231)
Q Consensus 21 g~~~~i~lvG~~g~GKSTLin~l~g~~ 47 (231)
..+..|.|+|++||||||+.+.|....
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 345799999999999999999997643
No 469
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.50 E-value=0.0046 Score=52.99 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRK 47 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~ 47 (231)
.-|.|.||||+|||+|.++|++..
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 449999999999999999998764
No 470
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.48 E-value=0.0017 Score=49.36 Aligned_cols=25 Identities=28% Similarity=0.283 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
..+.|.|++|+|||||+++|.....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999987653
No 471
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.47 E-value=0.00093 Score=55.29 Aligned_cols=41 Identities=20% Similarity=0.153 Sum_probs=29.2
Q ss_pred CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053 7 ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRK 47 (231)
Q Consensus 7 ~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~ 47 (231)
...+++.+...+..+....+.|.|+||+|||||++.|.+..
T Consensus 42 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 42 QDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp CCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 33444444445555533459999999999999999998763
No 472
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.45 E-value=0.004 Score=53.47 Aligned_cols=25 Identities=16% Similarity=0.393 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
.-|.|.||||+|||+|.++|++...
T Consensus 216 rGvLLyGPPGTGKTllAkAiA~e~~ 240 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLARACAAQTN 240 (434)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CeeEEECcCCCCHHHHHHHHHHHhC
Confidence 4599999999999999999987643
No 473
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.37 E-value=0.0022 Score=49.76 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRK 47 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~ 47 (231)
..+.|.|++|+|||||++.+....
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999997654
No 474
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=96.37 E-value=0.0012 Score=61.22 Aligned_cols=31 Identities=26% Similarity=0.230 Sum_probs=28.5
Q ss_pred ccCCCcccCCCCCCceEEEEEcCCCCCHHHHHH
Q 038053 9 VIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGN 41 (231)
Q Consensus 9 ~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin 41 (231)
+=|+||++.||.+ ..+++.|.+|||||||..
T Consensus 24 hNLkni~v~iP~~--~l~viTGvSGSGKSSLaf 54 (842)
T 2vf7_A 24 HNLKDISVKVPRD--ALVVFTGVSGSGKSSLAF 54 (842)
T ss_dssp TTCCSEEEEEESS--SEEEEESSTTSSHHHHHT
T ss_pred cCCCCeeEEecCC--CEEEEECCCCCCHHHHHH
Confidence 3489999999999 999999999999999984
No 475
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.36 E-value=0.0011 Score=58.04 Aligned_cols=30 Identities=20% Similarity=0.248 Sum_probs=25.8
Q ss_pred cccCCCCCCceEEEEEcCCCCCHHHHHHHHhC
Q 038053 14 WKPTSSSNGKRTVVLLGRTGNGKSATGNSILG 45 (231)
Q Consensus 14 ~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g 45 (231)
+.+.+.++ ..++++|.|||||||++|+|..
T Consensus 160 v~ldL~~~--pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 160 VVADLAKM--PHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp EEEEGGGS--CSEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEcccC--ceEEEECCCCCCHHHHHHHHHH
Confidence 55666677 7999999999999999999875
No 476
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.31 E-value=0.0021 Score=50.40 Aligned_cols=27 Identities=19% Similarity=0.266 Sum_probs=20.5
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053 19 SSNGKRTVVLLGRTGNGKSATGNSILGRK 47 (231)
Q Consensus 19 ~~g~~~~i~lvG~~g~GKSTLin~l~g~~ 47 (231)
..| ..|+|.|++||||||+++.|....
T Consensus 23 ~~g--~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 23 ARG--KFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCC--CEEEEECCC---CHHHHHHHHHHH
T ss_pred cCC--eEEEEECCCCCCHHHHHHHHHHHH
Confidence 456 899999999999999999987654
No 477
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.30 E-value=0.0019 Score=52.20 Aligned_cols=24 Identities=25% Similarity=0.508 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRK 47 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~ 47 (231)
..+.|.|+||+|||||+++|.+..
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh
Confidence 579999999999999999998754
No 478
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.29 E-value=0.0027 Score=52.37 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRK 47 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~ 47 (231)
..|+|+|++|||||||...|....
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999998653
No 479
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.24 E-value=0.0029 Score=52.50 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRK 47 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~ 47 (231)
..|+|+|++|||||||...|....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999988653
No 480
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.24 E-value=0.01 Score=54.78 Aligned_cols=25 Identities=24% Similarity=0.535 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
.-|.|.|+||+|||+|.++|++...
T Consensus 239 ~GILL~GPPGTGKT~LAraiA~elg 263 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp CEEEEECCTTSCHHHHHHHHHTTTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4599999999999999999998753
No 481
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.23 E-value=0.003 Score=50.74 Aligned_cols=24 Identities=21% Similarity=0.499 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRK 47 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~ 47 (231)
..+.|.|+||+|||||+++|+...
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 579999999999999999998654
No 482
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.23 E-value=0.0082 Score=51.32 Aligned_cols=25 Identities=24% Similarity=0.554 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
.-|.|.||||+|||+|.++|++...
T Consensus 217 rGvLLyGPPGTGKTlLAkAiA~e~~ 241 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAKAVANQTS 241 (437)
T ss_dssp SEEEEESSTTTTHHHHHHHHHHHHT
T ss_pred CCCceECCCCchHHHHHHHHHHHhC
Confidence 4499999999999999999987643
No 483
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.23 E-value=0.0041 Score=58.02 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRK 47 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~ 47 (231)
..+.|+|+||+|||||++.|+...
T Consensus 192 ~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHHH
Confidence 468999999999999999998765
No 484
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.21 E-value=0.0025 Score=53.87 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
..++++|+||+|||||++.|+....
T Consensus 36 ~~~~i~G~~G~GKs~~~~~~~~~~~ 60 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAKMLLLREY 60 (392)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999987654
No 485
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.21 E-value=0.0022 Score=53.73 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=23.4
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 038053 18 SSSNGKRTVVLLGRTGNGKSATGNSILGR 46 (231)
Q Consensus 18 i~~g~~~~i~lvG~~g~GKSTLin~l~g~ 46 (231)
+++| ..+.|+|+||+|||||+..++..
T Consensus 58 i~~G--~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 58 YPRG--RIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp EETT--EEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCC--cEEEEECCCCCCHHHHHHHHHHH
Confidence 4567 89999999999999999888754
No 486
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.18 E-value=0.0024 Score=47.35 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRK 47 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~ 47 (231)
..+.|.|++|+|||||++.+....
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHH
Confidence 678999999999999999987764
No 487
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.18 E-value=0.0016 Score=52.89 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=17.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGR 46 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~ 46 (231)
..|+|.|++||||||+.+.|...
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999998753
No 488
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.17 E-value=0.0035 Score=51.36 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRK 47 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~ 47 (231)
..|+|+|++|||||||...|....
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCccCHHHHHHHHHHhC
Confidence 689999999999999999998553
No 489
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.16 E-value=0.0038 Score=48.37 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=22.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053 20 SNGKRTVVLLGRTGNGKSATGNSILGRK 47 (231)
Q Consensus 20 ~g~~~~i~lvG~~g~GKSTLin~l~g~~ 47 (231)
.| ..|+|.|++||||||+++.|....
T Consensus 5 ~g--~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 5 TG--LFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp CC--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred Cc--eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46 899999999999999999986543
No 490
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.15 E-value=0.0029 Score=48.73 Aligned_cols=23 Identities=30% Similarity=0.379 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGR 46 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~ 46 (231)
..+.|.|+||+||||+..+|+..
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999988777654
No 491
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.15 E-value=0.0036 Score=51.38 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRK 47 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~ 47 (231)
..|+|+||+|||||||...|+...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC
Confidence 689999999999999999998654
No 492
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.15 E-value=0.0039 Score=47.73 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRK 47 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~ 47 (231)
..|+|+|++|+|||||...|...-
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 689999999999999999997653
No 493
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.15 E-value=0.008 Score=51.85 Aligned_cols=25 Identities=24% Similarity=0.557 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRKA 48 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~~ 48 (231)
.-|.|.||||+|||+|.++|++...
T Consensus 244 rGILLyGPPGTGKTlLAkAiA~e~~ 268 (467)
T 4b4t_H 244 KGILLYGPPGTGKTLCARAVANRTD 268 (467)
T ss_dssp SEEEECSCTTSSHHHHHHHHHHHHT
T ss_pred CceEeeCCCCCcHHHHHHHHHhccC
Confidence 4599999999999999999987643
No 494
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.12 E-value=0.0036 Score=49.16 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRK 47 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~ 47 (231)
..|+|.|..||||||+.+.|....
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHc
Confidence 789999999999999999998653
No 495
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=96.11 E-value=0.0018 Score=60.59 Aligned_cols=34 Identities=29% Similarity=0.339 Sum_probs=29.6
Q ss_pred cccCCCcccCCCCCCceEEEEEcCCCCCHHHHH-HHH
Q 038053 8 RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATG-NSI 43 (231)
Q Consensus 8 ~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLi-n~l 43 (231)
.+=|+||++.||.+ ..++|.|.+|||||||. .+|
T Consensus 11 ~hNLkni~~~ip~~--~l~v~tG~SGSGKSsLafdtl 45 (916)
T 3pih_A 11 VHNLKNITVRIPKN--RLVVITGVSGSGKSSLAMDTI 45 (916)
T ss_dssp STTCCSBCCEEETT--SEEEEEESTTSSSHHHHTTTH
T ss_pred ccccCcceeccCCC--cEEEEECCCCCcHHHHHHHHH
Confidence 34489999999999 99999999999999997 443
No 496
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=96.11 E-value=0.0019 Score=60.51 Aligned_cols=30 Identities=27% Similarity=0.274 Sum_probs=27.9
Q ss_pred ccCCCcccCCCCCCceEEEEEcCCCCCHHHHH
Q 038053 9 VIDGDWKPTSSSNGKRTVVLLGRTGNGKSATG 40 (231)
Q Consensus 9 ~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLi 40 (231)
+=|+||++.||.+ ..|+|.|.+|||||||.
T Consensus 32 hNLkni~v~iP~~--~lvv~tG~SGSGKSSLa 61 (972)
T 2r6f_A 32 HNLKNIDVEIPRG--KLVVLTGLSGSGKSSLA 61 (972)
T ss_dssp SSCCSEEEEEETT--SEEEEEESTTSSHHHHH
T ss_pred ccCCceeeeccCC--cEEEEECCCCCCHHHHH
Confidence 3489999999999 99999999999999996
No 497
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=96.11 E-value=0.0018 Score=60.74 Aligned_cols=30 Identities=20% Similarity=0.197 Sum_probs=27.9
Q ss_pred ccCCCcccCCCCCCceEEEEEcCCCCCHHHHH
Q 038053 9 VIDGDWKPTSSSNGKRTVVLLGRTGNGKSATG 40 (231)
Q Consensus 9 ~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLi 40 (231)
+=|+||++.||.+ ..|+|.|.+|||||||.
T Consensus 34 hNLkni~v~iP~~--~lvv~tG~SGSGKSSLa 63 (993)
T 2ygr_A 34 HNLRSVDLDLPRD--ALIVFTGLSGSGKSSLA 63 (993)
T ss_dssp SSCCSEEEEEESS--SEEEEEESTTSSHHHHH
T ss_pred cccCceeeeccCC--CEEEEECCCCCcHHHHH
Confidence 3489999999999 99999999999999996
No 498
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.10 E-value=0.0031 Score=48.55 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGR 46 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~ 46 (231)
..|+|+|++||||||+.+.|...
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 68999999999999999998753
No 499
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.07 E-value=0.0037 Score=49.27 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGRK 47 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~~ 47 (231)
..|+|.|++||||||+++.|....
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 899999999999999999987654
No 500
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.06 E-value=0.0038 Score=48.92 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 038053 24 RTVVLLGRTGNGKSATGNSILGR 46 (231)
Q Consensus 24 ~~i~lvG~~g~GKSTLin~l~g~ 46 (231)
.++||+|+|||||||+...|...
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHH
Confidence 68999999999999999998653
Done!