Query 038057
Match_columns 80
No_of_seqs 104 out of 1015
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 07:08:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038057.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038057hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03156 GDSL esterase/lipase; 99.9 7.5E-25 1.6E-29 165.1 6.3 64 17-80 16-80 (351)
2 cd01837 SGNH_plant_lipase_like 99.8 6.2E-21 1.3E-25 139.6 3.9 52 29-80 1-52 (315)
3 PRK15381 pathogenicity island 99.7 1.3E-17 2.7E-22 129.2 4.0 50 25-80 139-188 (408)
4 cd01847 Triacylglycerol_lipase 99.5 2.2E-14 4.7E-19 103.5 2.1 40 28-80 1-40 (281)
5 cd01846 fatty_acyltransferase_ 99.3 7.2E-13 1.6E-17 94.1 2.4 45 30-80 1-45 (270)
6 COG3240 Phospholipase/lecithin 97.5 0.00012 2.6E-09 56.9 4.5 48 24-76 25-72 (370)
7 PF00657 Lipase_GDSL: GDSL-lik 96.0 0.00018 3.9E-09 48.3 -4.8 45 31-75 1-57 (234)
8 PF08139 LPAM_1: Prokaryotic m 79.7 1.1 2.4E-05 22.4 1.1 14 1-14 6-19 (25)
9 PRK15206 long polar fimbrial p 73.0 5 0.00011 31.3 3.5 44 1-44 1-54 (359)
10 PF07172 GRP: Glycine rich pro 72.0 3.3 7.1E-05 26.5 2.0 24 1-24 1-25 (95)
11 PRK09810 entericidin A; Provis 71.3 4.6 0.0001 22.4 2.2 9 1-9 1-9 (41)
12 COG5510 Predicted small secret 60.7 11 0.00025 21.2 2.5 12 1-12 1-12 (44)
13 COG5633 Predicted periplasmic 59.1 9.4 0.0002 25.9 2.3 37 2-38 1-37 (123)
14 PF08282 Hydrolase_3: haloacid 58.8 3.8 8.1E-05 27.4 0.4 17 27-43 201-217 (254)
15 PRK10081 entericidin B membran 57.2 13 0.00029 21.2 2.4 8 1-8 1-8 (48)
16 PRK11627 hypothetical protein; 57.0 9.1 0.0002 27.2 2.1 14 1-14 1-14 (192)
17 cd01821 Rhamnogalacturan_acety 55.5 7 0.00015 26.2 1.3 14 29-42 1-14 (198)
18 PRK03669 mannosyl-3-phosphogly 52.3 7.9 0.00017 27.7 1.2 18 27-44 205-222 (271)
19 TIGR02463 MPGP_rel mannosyl-3- 51.3 7.8 0.00017 26.5 1.0 18 27-44 194-211 (221)
20 COG0561 Cof Predicted hydrolas 50.3 8.5 0.00018 27.1 1.1 18 28-45 205-222 (264)
21 cd00229 SGNH_hydrolase SGNH_hy 49.9 8 0.00017 23.7 0.8 15 31-45 1-15 (187)
22 TIGR01486 HAD-SF-IIB-MPGP mann 49.7 9.5 0.00021 26.9 1.2 18 28-45 194-211 (256)
23 cd01830 XynE_like SGNH_hydrola 49.2 8 0.00017 26.2 0.8 13 30-42 1-13 (204)
24 PRK10513 sugar phosphate phosp 48.2 8.9 0.00019 27.0 0.9 18 27-44 211-228 (270)
25 PRK10528 multifunctional acyl- 47.8 12 0.00027 25.3 1.6 14 28-41 10-23 (191)
26 PRK10976 putative hydrolase; P 47.7 9.5 0.00021 26.8 1.0 18 27-44 205-222 (266)
27 cd01839 SGNH_arylesterase_like 47.3 8.8 0.00019 25.9 0.7 11 30-40 1-11 (208)
28 PRK10523 lipoprotein involved 46.3 20 0.00043 26.5 2.5 18 1-18 1-18 (234)
29 PF13956 Ibs_toxin: Toxin Ibs, 44.8 12 0.00027 17.5 0.8 12 1-12 1-12 (19)
30 PF12710 HAD: haloacid dehalog 44.4 14 0.00031 24.1 1.4 15 27-41 174-188 (192)
31 TIGR01487 SPP-like sucrose-pho 43.2 11 0.00023 25.8 0.6 16 28-43 163-178 (215)
32 cd01841 NnaC_like NnaC (CMP-Ne 42.3 12 0.00025 24.4 0.7 13 29-41 1-13 (174)
33 PRK01158 phosphoglycolate phos 42.0 12 0.00027 25.4 0.8 17 27-43 172-188 (230)
34 cd01844 SGNH_hydrolase_like_6 41.9 11 0.00025 24.8 0.6 12 30-41 1-12 (177)
35 PRK15240 resistance to complem 41.4 23 0.00049 24.8 2.1 17 2-18 1-17 (185)
36 PF05388 Carbpep_Y_N: Carboxyp 41.4 31 0.00066 22.7 2.6 22 23-44 22-43 (113)
37 cd01825 SGNH_hydrolase_peri1 S 40.7 13 0.00028 24.2 0.8 13 30-42 1-13 (189)
38 PRK15126 thiamin pyrimidine py 40.3 12 0.00026 26.5 0.6 17 27-43 203-219 (272)
39 PRK10530 pyridoxal phosphate ( 39.6 14 0.0003 25.8 0.8 18 27-44 214-231 (272)
40 TIGR01485 SPP_plant-cyano sucr 39.4 13 0.00028 26.1 0.6 18 27-44 182-199 (249)
41 PF12276 DUF3617: Protein of u 39.0 36 0.00078 22.4 2.7 16 2-17 1-16 (162)
42 KOG3035 Isoamyl acetate-hydrol 38.3 16 0.00034 27.4 0.9 16 26-41 4-19 (245)
43 cd01827 sialate_O-acetylestera 38.0 18 0.00039 23.7 1.1 11 30-40 2-12 (188)
44 cd01832 SGNH_hydrolase_like_1 37.7 14 0.0003 24.1 0.5 11 30-40 1-11 (185)
45 TIGR01482 SPP-subfamily Sucros 37.0 16 0.00035 24.7 0.8 15 27-41 164-178 (225)
46 PRK10626 hypothetical protein; 36.5 37 0.0008 25.3 2.6 12 1-12 1-12 (239)
47 cd04501 SGNH_hydrolase_like_4 35.9 21 0.00045 23.4 1.1 11 30-40 2-12 (183)
48 PF07437 YfaZ: YfaZ precursor; 35.5 35 0.00076 24.0 2.3 15 2-16 1-15 (180)
49 COG3015 CutF Uncharacterized l 35.4 34 0.00073 24.5 2.2 17 1-17 1-17 (178)
50 PRK00192 mannosyl-3-phosphogly 35.0 20 0.00043 25.6 1.0 18 27-44 205-223 (273)
51 cd01834 SGNH_hydrolase_like_2 35.0 22 0.00047 23.0 1.1 14 29-42 2-15 (191)
52 PRK10002 outer membrane protei 35.0 30 0.00064 26.2 2.0 11 1-11 1-11 (362)
53 TIGR00099 Cof-subfamily Cof su 34.8 18 0.00039 25.3 0.7 18 27-44 203-220 (256)
54 TIGR01488 HAD-SF-IB Haloacid D 34.8 10 0.00023 24.5 -0.4 14 28-41 158-171 (177)
55 PF05116 S6PP: Sucrose-6F-phos 34.2 15 0.00034 26.3 0.3 16 27-42 180-195 (247)
56 PLN02382 probable sucrose-phos 33.3 17 0.00037 28.3 0.5 16 27-42 193-208 (413)
57 cd04506 SGNH_hydrolase_YpmR_li 33.0 20 0.00042 24.0 0.7 12 30-41 1-12 (204)
58 cd01831 Endoglucanase_E_like E 32.9 20 0.00043 23.4 0.7 11 30-40 1-11 (169)
59 cd01822 Lysophospholipase_L1_l 32.9 25 0.00053 22.6 1.1 11 30-40 2-12 (177)
60 TIGR02471 sucr_syn_bact_C sucr 32.5 21 0.00046 24.7 0.8 16 28-43 175-190 (236)
61 PRK09973 putative outer membra 32.1 54 0.0012 20.8 2.5 21 2-22 1-21 (85)
62 PF06517 Orthopox_A43R: Orthop 32.0 28 0.0006 25.1 1.3 22 1-22 1-22 (203)
63 PRK10797 glutamate and asparta 31.4 33 0.00071 25.1 1.7 21 2-22 3-23 (302)
64 cd01828 sialate_O-acetylestera 31.4 22 0.00047 23.0 0.6 12 30-41 1-12 (169)
65 cd01835 SGNH_hydrolase_like_3 30.9 32 0.00069 22.7 1.4 12 29-40 2-13 (193)
66 PF05984 Cytomega_UL20A: Cytom 30.5 1.2E+02 0.0026 19.6 3.9 24 2-25 1-24 (100)
67 PLN02954 phosphoserine phospha 30.0 23 0.0005 24.1 0.6 16 28-43 169-184 (224)
68 cd01838 Isoamyl_acetate_hydrol 29.7 28 0.0006 22.6 0.9 12 30-41 1-12 (199)
69 TIGR02461 osmo_MPG_phos mannos 29.1 24 0.00053 24.8 0.6 15 29-43 200-214 (225)
70 PF08155 NOGCT: NOGCT (NUC087) 28.4 25 0.00054 20.7 0.5 12 69-80 40-51 (55)
71 PF00879 Defensin_propep: Defe 28.2 70 0.0015 18.5 2.3 16 2-17 1-16 (52)
72 PRK10903 peptidyl-prolyl cis-t 27.9 92 0.002 21.8 3.4 12 1-12 1-12 (190)
73 PRK02944 OxaA-like protein pre 27.9 76 0.0016 23.3 3.1 22 1-22 1-22 (255)
74 PRK13861 type IV secretion sys 27.6 37 0.00079 25.6 1.4 13 1-13 1-13 (292)
75 COG2825 HlpA Outer membrane pr 27.5 65 0.0014 22.4 2.5 21 2-22 1-21 (170)
76 TIGR01484 HAD-SF-IIB HAD-super 27.1 27 0.00058 23.4 0.5 16 27-42 178-193 (204)
77 cd01836 FeeA_FeeB_like SGNH_hy 26.9 34 0.00075 22.5 1.0 11 30-40 4-14 (191)
78 PF05643 DUF799: Putative bact 26.3 36 0.00079 24.9 1.1 12 2-13 1-12 (215)
79 PF11119 DUF2633: Protein of u 25.9 75 0.0016 18.9 2.2 15 2-16 9-23 (59)
80 PRK10780 periplasmic chaperone 25.6 63 0.0014 21.8 2.2 14 2-15 1-14 (165)
81 PF11777 DUF3316: Protein of u 25.4 70 0.0015 20.5 2.3 11 67-77 76-86 (114)
82 cd01427 HAD_like Haloacid deha 25.1 27 0.00058 20.6 0.2 15 27-41 112-126 (139)
83 COG2854 Ttg2D ABC-type transpo 25.0 66 0.0014 23.4 2.3 20 1-20 2-21 (202)
84 PRK11443 lipoprotein; Provisio 24.7 54 0.0012 21.8 1.6 12 2-13 1-12 (124)
85 TIGR01626 ytfJ_HI0045 conserve 24.6 1.1E+02 0.0023 21.6 3.2 32 1-33 1-34 (184)
86 COG2755 TesA Lysophospholipase 24.6 38 0.00082 22.8 0.9 14 30-43 10-23 (216)
87 PF05822 UMPH-1: Pyrimidine 5' 24.5 41 0.00089 25.0 1.2 19 26-44 177-195 (246)
88 COG3026 RseB Negative regulato 24.0 75 0.0016 24.7 2.5 22 2-23 1-22 (320)
89 cd01820 PAF_acetylesterase_lik 23.7 38 0.00082 23.1 0.8 14 27-40 31-44 (214)
90 PF06615 DUF1147: Protein of u 23.6 45 0.00097 19.4 1.0 12 1-12 40-51 (59)
91 TIGR01489 DKMTPPase-SF 2,3-dik 23.5 52 0.0011 21.3 1.4 16 28-43 162-177 (188)
92 cd01829 SGNH_hydrolase_peri2 S 23.5 31 0.00067 22.8 0.3 12 30-41 1-12 (200)
93 PRK10053 hypothetical protein; 23.5 78 0.0017 21.4 2.3 13 2-14 1-13 (130)
94 PF10731 Anophelin: Thrombin i 23.5 1E+02 0.0022 18.6 2.5 14 1-14 1-14 (65)
95 PF10913 DUF2706: Protein of u 23.3 1.2E+02 0.0025 17.9 2.7 22 1-22 1-22 (60)
96 PF06873 SerH: Cell surface im 23.2 77 0.0017 25.3 2.5 12 1-12 1-12 (403)
97 PF02402 Lysis_col: Lysis prot 23.2 39 0.00085 19.2 0.6 19 2-20 1-19 (46)
98 PLN02887 hydrolase family prot 23.0 37 0.00081 28.0 0.7 18 27-44 522-539 (580)
99 PF13124 DUF3963: Protein of u 22.8 1E+02 0.0022 16.8 2.2 16 2-17 16-33 (40)
100 PRK02710 plastocyanin; Provisi 22.5 1.9E+02 0.0041 18.4 3.9 14 1-14 1-14 (119)
101 PRK07718 fliL flagellar basal 22.2 85 0.0018 20.9 2.3 14 1-14 1-14 (142)
102 PRK09733 putative fimbrial pro 22.2 87 0.0019 21.2 2.4 10 1-10 1-10 (181)
103 COG1930 CbiN ABC-type cobalt t 21.8 1.1E+02 0.0023 20.0 2.5 14 1-14 1-14 (97)
104 KOG4509 Uncharacterized conser 21.8 44 0.00096 24.6 0.8 21 58-78 211-231 (247)
105 COG2247 LytB Putative cell wal 21.7 1E+02 0.0022 24.2 2.8 16 26-41 26-41 (337)
106 PRK11590 hypothetical protein; 21.6 59 0.0013 22.3 1.4 15 27-41 175-189 (211)
107 TIGR01544 HAD-SF-IE haloacid d 21.6 50 0.0011 24.8 1.1 18 26-43 209-226 (277)
108 TIGR01491 HAD-SF-IB-PSPlk HAD- 21.4 31 0.00067 22.7 -0.0 17 27-43 162-178 (201)
109 COG3017 LolB Outer membrane li 21.3 1E+02 0.0022 22.6 2.6 22 1-22 3-24 (206)
110 PRK10449 heat-inducible protei 21.3 88 0.0019 20.7 2.2 14 2-15 1-14 (140)
111 TIGR01490 HAD-SF-IB-hyp1 HAD-s 20.8 33 0.00071 22.8 0.0 14 28-41 171-184 (202)
112 PRK13582 thrH phosphoserine ph 20.6 44 0.00095 22.3 0.6 14 28-41 144-157 (205)
113 PTZ00174 phosphomannomutase; P 20.3 52 0.0011 23.2 0.9 18 28-45 200-221 (247)
114 PF11153 DUF2931: Protein of u 20.1 86 0.0019 22.0 2.0 18 2-20 1-18 (216)
115 PF03996 Hema_esterase: Hemagg 20.1 52 0.0011 24.8 0.9 17 29-45 45-64 (258)
116 PF06291 Lambda_Bor: Bor prote 20.0 63 0.0014 20.8 1.2 11 2-12 1-11 (97)
No 1
>PLN03156 GDSL esterase/lipase; Provisional
Probab=99.91 E-value=7.5e-25 Score=165.11 Aligned_cols=64 Identities=45% Similarity=0.820 Sum_probs=53.4
Q ss_pred HHhhcccccCCCCeEEEcCCccccCCCcchhhhhccCCCCCCCCCCCC-CCCCCCCCCCchhccC
Q 038057 17 ITSSTDATSRLAPALYVLGDSLLDSGNNNYLQTIIKANYSPYGEDFVN-KSTGRFSNGKTVADFI 80 (80)
Q Consensus 17 ~~~~~~~~~~~~~~if~FGDSlsDtGN~~~~~~~~~~~~~PYG~~~~~-~ptGRfSdG~~~~Dfi 80 (80)
++.+-++....+++||+||||++|+||++++.+..++++||||++|++ +|||||||||+|+|||
T Consensus 16 ~~~~~~~~~~~~~aifvFGDSl~D~GN~~~l~~~~~~~~~pyG~~f~~~~ptGRfSnGr~~~D~i 80 (351)
T PLN03156 16 LLVLVAETCAKVPAIIVFGDSSVDAGNNNQISTVAKSNFEPYGRDFPGGRPTGRFCNGRIAPDFI 80 (351)
T ss_pred HHHHHhcccCCCCEEEEecCcCccCCCccccccccccCCCCCCCCCCCCCCCccccCCChhhhhH
Confidence 333333345679999999999999999987655567899999999986 6999999999999996
No 2
>cd01837 SGNH_plant_lipase_like SGNH_plant_lipase_like, a plant specific subfamily of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.82 E-value=6.2e-21 Score=139.64 Aligned_cols=52 Identities=65% Similarity=1.181 Sum_probs=46.7
Q ss_pred CeEEEcCCccccCCCcchhhhhccCCCCCCCCCCCCCCCCCCCCCCchhccC
Q 038057 29 PALYVLGDSLLDSGNNNYLQTIIKANYSPYGEDFVNKSTGRFSNGKTVADFI 80 (80)
Q Consensus 29 ~~if~FGDSlsDtGN~~~~~~~~~~~~~PYG~~~~~~ptGRfSdG~~~~Dfi 80 (80)
++||+||||++|+||+.+..+..++++||||++|+++|+||||||++|+|+|
T Consensus 1 ~al~vFGDS~sD~Gn~~~~~~~~~~~~~PyG~~~~~~p~GRfSnG~~~~d~l 52 (315)
T cd01837 1 PALFVFGDSLVDTGNNNYLPTLAKANFPPYGIDFPGRPTGRFSNGRLIIDFI 52 (315)
T ss_pred CcEEEecCccccCCCccccccccccCCCCCcCcCCCCCCccccCCchhhhhh
Confidence 5899999999999999776554457899999999999999999999999986
No 3
>PRK15381 pathogenicity island 2 effector protein SseJ; Provisional
Probab=99.69 E-value=1.3e-17 Score=129.17 Aligned_cols=50 Identities=36% Similarity=0.490 Sum_probs=43.4
Q ss_pred cCCCCeEEEcCCccccCCCcchhhhhccCCCCCCCCCCCCCCCCCCCCCCchhccC
Q 038057 25 SRLAPALYVLGDSLLDSGNNNYLQTIIKANYSPYGEDFVNKSTGRFSNGKTVADFI 80 (80)
Q Consensus 25 ~~~~~~if~FGDSlsDtGN~~~~~~~~~~~~~PYG~~~~~~ptGRfSdG~~~~Dfi 80 (80)
...+++||+||||++||||+.+..+. ..+||||++| +|||||||+|+|||
T Consensus 139 ~~~~~ai~vFGDSlsDtGnn~y~~t~--~~~PPyG~~f----tGRFSNG~v~~DfL 188 (408)
T PRK15381 139 LGDITRLVFFGDSLSDSLGRMFEKTH--HILPSYGQYF----GGRFTNGFTWTEFL 188 (408)
T ss_pred cCCCCeEEEeCCccccCCCccccccc--cCCCCCCCCC----CcccCCCchhhhee
Confidence 35899999999999999887654332 5699999998 99999999999996
No 4
>cd01847 Triacylglycerol_lipase_like Triacylglycerol lipase-like subfamily of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Members of this subfamily might hydrolyze triacylglycerol into diacylglycerol and fatty acid anions.
Probab=99.46 E-value=2.2e-14 Score=103.51 Aligned_cols=40 Identities=28% Similarity=0.269 Sum_probs=33.1
Q ss_pred CCeEEEcCCccccCCCcchhhhhccCCCCCCCCCCCCCCCCCCCCCCchhccC
Q 038057 28 APALYVLGDSLLDSGNNNYLQTIIKANYSPYGEDFVNKSTGRFSNGKTVADFI 80 (80)
Q Consensus 28 ~~~if~FGDSlsDtGN~~~~~~~~~~~~~PYG~~~~~~ptGRfSdG~~~~Dfi 80 (80)
|++||+||||++|+||+++.. + +++|+|||||||+++|++
T Consensus 1 ~~~i~vFGDSl~D~Gn~~~~~--------~-----~~~~~gRFsnG~~~~d~~ 40 (281)
T cd01847 1 FSRVVVFGDSLSDVGTYNRAG--------V-----GAAGGGRFTVNDGSIWSL 40 (281)
T ss_pred CCceEEecCcccccCCCCccc--------c-----CCCCCcceecCCcchHHH
Confidence 579999999999999996542 1 246899999999999874
No 5
>cd01846 fatty_acyltransferase_like Fatty acyltransferase-like subfamily of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Might catalyze fatty acid transfer between phosphatidylcholine and sterols.
Probab=99.32 E-value=7.2e-13 Score=94.11 Aligned_cols=45 Identities=38% Similarity=0.479 Sum_probs=33.2
Q ss_pred eEEEcCCccccCCCcchhhhhccCCCCCCCCCCCCCCCCCCCCCCchhccC
Q 038057 30 ALYVLGDSLLDSGNNNYLQTIIKANYSPYGEDFVNKSTGRFSNGKTVADFI 80 (80)
Q Consensus 30 ~if~FGDSlsDtGN~~~~~~~~~~~~~PYG~~~~~~ptGRfSdG~~~~Dfi 80 (80)
.+|+||||++|+||+...... ..+|++ +..|+||||||++|+|+|
T Consensus 1 ~l~vFGDS~sD~Gn~~~~~~~---~~~~~~---~~~~~grfsnG~~w~d~l 45 (270)
T cd01846 1 RLVVFGDSLSDTGNIFKLTGG---SNPPPS---PPYFGGRFSNGPVWVEYL 45 (270)
T ss_pred CeEEeeCccccCCcchhhcCC---CCCCCC---CCCCCCccCCchhHHHHH
Confidence 489999999999998654311 123333 234799999999999985
No 6
>COG3240 Phospholipase/lecithinase/hemolysin [Lipid metabolism / General function prediction only]
Probab=97.55 E-value=0.00012 Score=56.92 Aligned_cols=48 Identities=25% Similarity=0.205 Sum_probs=30.4
Q ss_pred ccCCCCeEEEcCCccccCCCcchhhhhccCCCCCCCCCCCCCCCCCCCCCCch
Q 038057 24 TSRLAPALYVLGDSLLDSGNNNYLQTIIKANYSPYGEDFVNKSTGRFSNGKTV 76 (80)
Q Consensus 24 ~~~~~~~if~FGDSlsDtGN~~~~~~~~~~~~~PYG~~~~~~ptGRfSdG~~~ 76 (80)
..+++..+.+||||+||+||...... .. - ++..|...|-.++.+|..+
T Consensus 25 ~~~~~~~l~vfGDSlSDsg~~~~~a~--~~-~--~~~~~~~~~gp~~~~G~~~ 72 (370)
T COG3240 25 SLAPFQRLVVFGDSLSDSGNYYRPAG--HH-G--DPGSYGTIPGPSYQNGNGY 72 (370)
T ss_pred cccccceEEEeccchhhcccccCccc--cc-C--CccccccccCCcccCCCce
Confidence 35799999999999999999753321 01 1 1123333456677776544
No 7
>PF00657 Lipase_GDSL: GDSL-like Lipase/Acylhydrolase; InterPro: IPR001087 A variety of lipolytic enzymes with serine as part of the active site have been identified []. Members of this entry include; Aeromonas hydrophila lipase, Vibrio mimicus arylesterase, Vibrio parahaemolyticus thermolabile haemolysin, rabbit phospholipase (AdRab-B), and Brassica napus anter-specific proline-rich protein.; GO: 0016788 hydrolase activity, acting on ester bonds, 0006629 lipid metabolic process; PDB: 2WAO_A 2WAB_A 1V2G_A 1U8U_A 1JRL_A 1IVN_A 1J00_A 1DEO_A 1K7C_A 1PP4_A ....
Probab=96.00 E-value=0.00018 Score=48.28 Aligned_cols=45 Identities=33% Similarity=0.525 Sum_probs=22.4
Q ss_pred EEEcCCccccCCCcc----hhhhh---c----cCCCCCCCCCCCCC-CCCCCCCCCc
Q 038057 31 LYVLGDSLLDSGNNN----YLQTI---I----KANYSPYGEDFVNK-STGRFSNGKT 75 (80)
Q Consensus 31 if~FGDSlsDtGN~~----~~~~~---~----~~~~~PYG~~~~~~-ptGRfSdG~~ 75 (80)
|++||||++|.|... +.... . .....+++..+... ..|++++|++
T Consensus 1 i~~fGDS~td~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~a~~G~~~~~~~ 57 (234)
T PF00657_consen 1 IVVFGDSLTDGGGDSNGGGWPEGLANNLSSCLGANQRNSGVDVSNYAISGATSDGDL 57 (234)
T ss_dssp EEEEESHHHHTTTSSTTCTHHHHHHHHCHHCCHHHHHCTTEEEEEEE-TT--CC-HG
T ss_pred CEEEeehhcccCCCCCCcchhhhHHHHHhhccccccCCCCCCeeccccCCCcccccc
Confidence 689999999993221 11111 0 11122455555444 4899998766
No 8
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=79.72 E-value=1.1 Score=22.44 Aligned_cols=14 Identities=21% Similarity=0.346 Sum_probs=8.7
Q ss_pred CcchhhHHHHHHHH
Q 038057 1 MISKYSITSSFIFL 14 (80)
Q Consensus 1 ~~~~~~l~~~l~~l 14 (80)
||||..+....++.
T Consensus 6 mmKkil~~l~a~~~ 19 (25)
T PF08139_consen 6 MMKKILFPLLALFM 19 (25)
T ss_pred HHHHHHHHHHHHHH
Confidence 57887765555543
No 9
>PRK15206 long polar fimbrial protein LpfD; Provisional
Probab=72.98 E-value=5 Score=31.27 Aligned_cols=44 Identities=14% Similarity=0.119 Sum_probs=23.8
Q ss_pred CcchhhHHHHHHHHHHHHhhcc--cc--cCC------CCeEEEcCCccccCCCc
Q 038057 1 MISKYSITSSFIFLLFITSSTD--AT--SRL------APALYVLGDSLLDSGNN 44 (80)
Q Consensus 1 ~~~~~~l~~~l~~l~~~~~~~~--~~--~~~------~~~if~FGDSlsDtGN~ 44 (80)
||||+.+.+.+++++++.+..+ ++ ..| ..--+.|.+...|.=++
T Consensus 1 ~~~k~~~~~~~l~~~~~~~~~a~~a~~~G~C~~~gGt~~y~~~~~~~~~~~~~N 54 (359)
T PRK15206 1 MLKKLMMFTGLLGGSVLFSGQALAAADWGPCTPEGGTHIFSATINKTISDTSKN 54 (359)
T ss_pred ChHHHHHHHHHHHHHHHhccchhhcccCCcccCCCCcEEEEEeccceecccccC
Confidence 8999876666555555443333 11 123 23345567777766444
No 10
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=72.03 E-value=3.3 Score=26.50 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=11.6
Q ss_pred CcchhhHHHHHHH-HHHHHhhcccc
Q 038057 1 MISKYSITSSFIF-LLFITSSTDAT 24 (80)
Q Consensus 1 ~~~~~~l~~~l~~-l~~~~~~~~~~ 24 (80)
|=+|.+|++.+++ +++++||.+++
T Consensus 1 MaSK~~llL~l~LA~lLlisSevaa 25 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEVAA 25 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhhh
Confidence 4445554444443 44555655543
No 11
>PRK09810 entericidin A; Provisional
Probab=71.35 E-value=4.6 Score=22.41 Aligned_cols=9 Identities=11% Similarity=0.320 Sum_probs=6.8
Q ss_pred CcchhhHHH
Q 038057 1 MISKYSITS 9 (80)
Q Consensus 1 ~~~~~~l~~ 9 (80)
||||.++.+
T Consensus 1 mMkk~~~l~ 9 (41)
T PRK09810 1 MMKRLIVLV 9 (41)
T ss_pred ChHHHHHHH
Confidence 899977654
No 12
>COG5510 Predicted small secreted protein [Function unknown]
Probab=60.69 E-value=11 Score=21.20 Aligned_cols=12 Identities=17% Similarity=0.343 Sum_probs=7.6
Q ss_pred CcchhhHHHHHH
Q 038057 1 MISKYSITSSFI 12 (80)
Q Consensus 1 ~~~~~~l~~~l~ 12 (80)
||||..+.+.++
T Consensus 1 mmk~t~l~i~~v 12 (44)
T COG5510 1 MMKKTILLIALV 12 (44)
T ss_pred CchHHHHHHHHH
Confidence 788866554433
No 13
>COG5633 Predicted periplasmic lipoprotein [General function prediction only]
Probab=59.10 E-value=9.4 Score=25.85 Aligned_cols=37 Identities=22% Similarity=0.140 Sum_probs=19.8
Q ss_pred cchhhHHHHHHHHHHHHhhcccccCCCCeEEEcCCcc
Q 038057 2 ISKYSITSSFIFLLFITSSTDATSRLAPALYVLGDSL 38 (80)
Q Consensus 2 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~if~FGDSl 38 (80)
|+||.+.++.++++..|++-.+-..--.+-.+|-+|.
T Consensus 1 Mrk~~~~~l~~~lLvGCsS~~~i~~~~~q~vvm~~s~ 37 (123)
T COG5633 1 MRKLCLLSLALLLLVGCSSHQEILVNDEQSVVMETSV 37 (123)
T ss_pred CceehHHHHHHHHhhccCCCCCccccccceeeecccc
Confidence 8899885554444445555443222224555666643
No 14
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=58.84 E-value=3.8 Score=27.44 Aligned_cols=17 Identities=24% Similarity=0.182 Sum_probs=13.7
Q ss_pred CCCeEEEcCCccccCCC
Q 038057 27 LAPALYVLGDSLLDSGN 43 (80)
Q Consensus 27 ~~~~if~FGDSlsDtGN 43 (80)
....+++||||.+|..-
T Consensus 201 ~~~~~~~~GD~~ND~~M 217 (254)
T PF08282_consen 201 SPEDIIAFGDSENDIEM 217 (254)
T ss_dssp SGGGEEEEESSGGGHHH
T ss_pred ccceeEEeecccccHhH
Confidence 45689999999999533
No 15
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=57.17 E-value=13 Score=21.24 Aligned_cols=8 Identities=25% Similarity=0.285 Sum_probs=5.9
Q ss_pred CcchhhHH
Q 038057 1 MISKYSIT 8 (80)
Q Consensus 1 ~~~~~~l~ 8 (80)
||||.+..
T Consensus 1 MmKk~i~~ 8 (48)
T PRK10081 1 MVKKTIAA 8 (48)
T ss_pred ChHHHHHH
Confidence 88887754
No 16
>PRK11627 hypothetical protein; Provisional
Probab=56.98 E-value=9.1 Score=27.23 Aligned_cols=14 Identities=21% Similarity=0.380 Sum_probs=9.6
Q ss_pred CcchhhHHHHHHHH
Q 038057 1 MISKYSITSSFIFL 14 (80)
Q Consensus 1 ~~~~~~l~~~l~~l 14 (80)
||||+.+.++.+++
T Consensus 1 mlkklll~l~a~~~ 14 (192)
T PRK11627 1 MLKKILFPLVALFM 14 (192)
T ss_pred ChHHHHHHHHHHHH
Confidence 89999876554443
No 17
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=55.51 E-value=7 Score=26.19 Aligned_cols=14 Identities=29% Similarity=0.641 Sum_probs=11.7
Q ss_pred CeEEEcCCccccCC
Q 038057 29 PALYVLGDSLLDSG 42 (80)
Q Consensus 29 ~~if~FGDSlsDtG 42 (80)
++|.+||||++.-.
T Consensus 1 ~~i~~~GDS~t~G~ 14 (198)
T cd01821 1 PTIFLAGDSTVADY 14 (198)
T ss_pred CEEEEEecCCcccC
Confidence 57899999998844
No 18
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=52.33 E-value=7.9 Score=27.68 Aligned_cols=18 Identities=28% Similarity=0.193 Sum_probs=14.6
Q ss_pred CCCeEEEcCCccccCCCc
Q 038057 27 LAPALYVLGDSLLDSGNN 44 (80)
Q Consensus 27 ~~~~if~FGDSlsDtGN~ 44 (80)
....+++||||.+|..-.
T Consensus 205 ~~~~viafGDs~NDi~Ml 222 (271)
T PRK03669 205 TRPTTLGLGDGPNDAPLL 222 (271)
T ss_pred CCceEEEEcCCHHHHHHH
Confidence 457899999999996544
No 19
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=51.32 E-value=7.8 Score=26.49 Aligned_cols=18 Identities=22% Similarity=-0.071 Sum_probs=14.3
Q ss_pred CCCeEEEcCCccccCCCc
Q 038057 27 LAPALYVLGDSLLDSGNN 44 (80)
Q Consensus 27 ~~~~if~FGDSlsDtGN~ 44 (80)
....++.||||.+|.--.
T Consensus 194 ~~~~vi~~GD~~NDi~ml 211 (221)
T TIGR02463 194 PDVKTLGLGDGPNDLPLL 211 (221)
T ss_pred CCCcEEEECCCHHHHHHH
Confidence 457899999999996443
No 20
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=50.29 E-value=8.5 Score=27.10 Aligned_cols=18 Identities=22% Similarity=0.159 Sum_probs=14.5
Q ss_pred CCeEEEcCCccccCCCcc
Q 038057 28 APALYVLGDSLLDSGNNN 45 (80)
Q Consensus 28 ~~~if~FGDSlsDtGN~~ 45 (80)
...+++||||.+|.....
T Consensus 205 ~~~v~afGD~~ND~~Ml~ 222 (264)
T COG0561 205 LEEVIAFGDSTNDIEMLE 222 (264)
T ss_pred HHHeEEeCCccccHHHHH
Confidence 357999999999976653
No 21
>cd00229 SGNH_hydrolase SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=49.94 E-value=8 Score=23.66 Aligned_cols=15 Identities=27% Similarity=0.470 Sum_probs=12.2
Q ss_pred EEEcCCccccCCCcc
Q 038057 31 LYVLGDSLLDSGNNN 45 (80)
Q Consensus 31 if~FGDSlsDtGN~~ 45 (80)
|.++|||+++..+..
T Consensus 1 i~~~GDS~~~g~~~~ 15 (187)
T cd00229 1 ILVIGDSITAGYGAS 15 (187)
T ss_pred CeeeccccccccCCC
Confidence 578999999987753
No 22
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=49.66 E-value=9.5 Score=26.91 Aligned_cols=18 Identities=33% Similarity=0.093 Sum_probs=15.0
Q ss_pred CCeEEEcCCccccCCCcc
Q 038057 28 APALYVLGDSLLDSGNNN 45 (80)
Q Consensus 28 ~~~if~FGDSlsDtGN~~ 45 (80)
...+++||||.+|..-..
T Consensus 194 ~~~~~a~GD~~ND~~Ml~ 211 (256)
T TIGR01486 194 AIKVVGLGDSPNDLPLLE 211 (256)
T ss_pred CceEEEEcCCHhhHHHHH
Confidence 678999999999976654
No 23
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=49.22 E-value=8 Score=26.24 Aligned_cols=13 Identities=38% Similarity=0.641 Sum_probs=10.4
Q ss_pred eEEEcCCccccCC
Q 038057 30 ALYVLGDSLLDSG 42 (80)
Q Consensus 30 ~if~FGDSlsDtG 42 (80)
.|..||||+++-+
T Consensus 1 ~iv~~GDSiT~G~ 13 (204)
T cd01830 1 SVVALGDSITDGR 13 (204)
T ss_pred CEEEEecccccCC
Confidence 3789999999843
No 24
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=48.18 E-value=8.9 Score=26.97 Aligned_cols=18 Identities=17% Similarity=0.119 Sum_probs=14.0
Q ss_pred CCCeEEEcCCccccCCCc
Q 038057 27 LAPALYVLGDSLLDSGNN 44 (80)
Q Consensus 27 ~~~~if~FGDSlsDtGN~ 44 (80)
....+++||||.+|.--.
T Consensus 211 ~~~~v~afGD~~NDi~Ml 228 (270)
T PRK10513 211 KPEEVMAIGDQENDIAMI 228 (270)
T ss_pred CHHHEEEECCchhhHHHH
Confidence 446899999999995443
No 25
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=47.82 E-value=12 Score=25.28 Aligned_cols=14 Identities=50% Similarity=0.688 Sum_probs=12.2
Q ss_pred CCeEEEcCCccccC
Q 038057 28 APALYVLGDSLLDS 41 (80)
Q Consensus 28 ~~~if~FGDSlsDt 41 (80)
...|..||||++.-
T Consensus 10 ~~~iv~~GDSit~G 23 (191)
T PRK10528 10 ADTLLILGDSLSAG 23 (191)
T ss_pred CCEEEEEeCchhhc
Confidence 56999999999875
No 26
>PRK10976 putative hydrolase; Provisional
Probab=47.73 E-value=9.5 Score=26.81 Aligned_cols=18 Identities=17% Similarity=0.132 Sum_probs=14.2
Q ss_pred CCCeEEEcCCccccCCCc
Q 038057 27 LAPALYVLGDSLLDSGNN 44 (80)
Q Consensus 27 ~~~~if~FGDSlsDtGN~ 44 (80)
....+++||||.+|..-.
T Consensus 205 ~~~~viafGD~~NDi~Ml 222 (266)
T PRK10976 205 SLKDCIAFGDGMNDAEML 222 (266)
T ss_pred CHHHeEEEcCCcccHHHH
Confidence 446899999999996544
No 27
>cd01839 SGNH_arylesterase_like SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A. tumefaciens. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=47.26 E-value=8.8 Score=25.90 Aligned_cols=11 Identities=27% Similarity=0.287 Sum_probs=9.3
Q ss_pred eEEEcCCcccc
Q 038057 30 ALYVLGDSLLD 40 (80)
Q Consensus 30 ~if~FGDSlsD 40 (80)
.|..||||++.
T Consensus 1 ~I~~~GDSiT~ 11 (208)
T cd01839 1 TILCFGDSNTW 11 (208)
T ss_pred CEEEEecCccc
Confidence 37899999986
No 28
>PRK10523 lipoprotein involved with copper homeostasis and adhesion; Provisional
Probab=46.29 E-value=20 Score=26.54 Aligned_cols=18 Identities=33% Similarity=0.204 Sum_probs=11.8
Q ss_pred CcchhhHHHHHHHHHHHH
Q 038057 1 MISKYSITSSFIFLLFIT 18 (80)
Q Consensus 1 ~~~~~~l~~~l~~l~~~~ 18 (80)
||||+.+..++.+.++.+
T Consensus 1 ~mkk~~~~~~~a~~l~~l 18 (234)
T PRK10523 1 MMKKAIITALAAAGLFTL 18 (234)
T ss_pred CchHHHHHHHHHHHHHHh
Confidence 899998766555544443
No 29
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=44.83 E-value=12 Score=17.49 Aligned_cols=12 Identities=17% Similarity=0.207 Sum_probs=5.8
Q ss_pred CcchhhHHHHHH
Q 038057 1 MISKYSITSSFI 12 (80)
Q Consensus 1 ~~~~~~l~~~l~ 12 (80)
|||-.+++..++
T Consensus 1 MMk~vIIlvvLL 12 (19)
T PF13956_consen 1 MMKLVIILVVLL 12 (19)
T ss_pred CceehHHHHHHH
Confidence 666555433333
No 30
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=44.36 E-value=14 Score=24.09 Aligned_cols=15 Identities=27% Similarity=0.333 Sum_probs=13.1
Q ss_pred CCCeEEEcCCccccC
Q 038057 27 LAPALYVLGDSLLDS 41 (80)
Q Consensus 27 ~~~~if~FGDSlsDt 41 (80)
....++.+|||.+|.
T Consensus 174 ~~~~~~~iGDs~~D~ 188 (192)
T PF12710_consen 174 DPDRVIAIGDSINDL 188 (192)
T ss_dssp TCCEEEEEESSGGGH
T ss_pred CCCeEEEEECCHHHH
Confidence 567899999999994
No 31
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=43.16 E-value=11 Score=25.82 Aligned_cols=16 Identities=25% Similarity=0.210 Sum_probs=12.8
Q ss_pred CCeEEEcCCccccCCC
Q 038057 28 APALYVLGDSLLDSGN 43 (80)
Q Consensus 28 ~~~if~FGDSlsDtGN 43 (80)
...+++||||.+|..-
T Consensus 163 ~~~~i~iGDs~ND~~m 178 (215)
T TIGR01487 163 PEEVAAIGDSENDIDL 178 (215)
T ss_pred HHHEEEECCCHHHHHH
Confidence 3469999999999544
No 32
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=42.28 E-value=12 Score=24.39 Aligned_cols=13 Identities=31% Similarity=0.675 Sum_probs=10.5
Q ss_pred CeEEEcCCccccC
Q 038057 29 PALYVLGDSLLDS 41 (80)
Q Consensus 29 ~~if~FGDSlsDt 41 (80)
+.|..||||++.-
T Consensus 1 ~~iv~~GdS~t~~ 13 (174)
T cd01841 1 KNIVFIGDSLFEG 13 (174)
T ss_pred CCEEEEcchhhhc
Confidence 4688999999873
No 33
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=42.00 E-value=12 Score=25.44 Aligned_cols=17 Identities=24% Similarity=0.112 Sum_probs=13.4
Q ss_pred CCCeEEEcCCccccCCC
Q 038057 27 LAPALYVLGDSLLDSGN 43 (80)
Q Consensus 27 ~~~~if~FGDSlsDtGN 43 (80)
....+++||||.+|..-
T Consensus 172 ~~~~~i~~GD~~NDi~m 188 (230)
T PRK01158 172 DPEEVAAIGDSENDLEM 188 (230)
T ss_pred CHHHEEEECCchhhHHH
Confidence 34679999999999544
No 34
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=41.89 E-value=11 Score=24.82 Aligned_cols=12 Identities=17% Similarity=0.263 Sum_probs=9.9
Q ss_pred eEEEcCCccccC
Q 038057 30 ALYVLGDSLLDS 41 (80)
Q Consensus 30 ~if~FGDSlsDt 41 (80)
+|..+|||++.-
T Consensus 1 ~iv~~GDSit~G 12 (177)
T cd01844 1 PWVFYGTSISQG 12 (177)
T ss_pred CEEEEeCchhcC
Confidence 478999999884
No 35
>PRK15240 resistance to complement killing; Provisional
Probab=41.44 E-value=23 Score=24.85 Aligned_cols=17 Identities=12% Similarity=0.126 Sum_probs=10.6
Q ss_pred cchhhHHHHHHHHHHHH
Q 038057 2 ISKYSITSSFIFLLFIT 18 (80)
Q Consensus 2 ~~~~~l~~~l~~l~~~~ 18 (80)
|||..+.+++++++...
T Consensus 1 Mkk~~~~~~~~~~~~~~ 17 (185)
T PRK15240 1 MKKIVLSSLLLSAAGLA 17 (185)
T ss_pred CchhHHHHHHHHHHHhc
Confidence 78888766665444444
No 36
>PF05388 Carbpep_Y_N: Carboxypeptidase Y pro-peptide; InterPro: IPR008442 This signature is found at the N terminus of carboxypeptidase Y, which belong to MEROPS peptidase family S10. This region contains the signal peptide and pro-peptide regions [,].; GO: 0004185 serine-type carboxypeptidase activity, 0005773 vacuole
Probab=41.41 E-value=31 Score=22.69 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=16.5
Q ss_pred cccCCCCeEEEcCCccccCCCc
Q 038057 23 ATSRLAPALYVLGDSLLDSGNN 44 (80)
Q Consensus 23 ~~~~~~~~if~FGDSlsDtGN~ 44 (80)
..++++..+-.|+|++...++.
T Consensus 22 s~Qqpl~~~~~~~d~~~~~~~~ 43 (113)
T PF05388_consen 22 SVQQPLGNIQQFGDSFESAGNS 43 (113)
T ss_pred hhccccccccccchhhhhcchh
Confidence 3367777777899999877764
No 37
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=40.67 E-value=13 Score=24.20 Aligned_cols=13 Identities=31% Similarity=0.440 Sum_probs=10.3
Q ss_pred eEEEcCCccccCC
Q 038057 30 ALYVLGDSLLDSG 42 (80)
Q Consensus 30 ~if~FGDSlsDtG 42 (80)
.|.++|||+++-+
T Consensus 1 ~iv~~GDS~t~g~ 13 (189)
T cd01825 1 RIAQLGDSHIAGD 13 (189)
T ss_pred CeeEecCcccccc
Confidence 3778999999843
No 38
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=40.34 E-value=12 Score=26.47 Aligned_cols=17 Identities=18% Similarity=0.214 Sum_probs=13.5
Q ss_pred CCCeEEEcCCccccCCC
Q 038057 27 LAPALYVLGDSLLDSGN 43 (80)
Q Consensus 27 ~~~~if~FGDSlsDtGN 43 (80)
....+++||||.+|..-
T Consensus 203 ~~~~v~afGD~~NDi~M 219 (272)
T PRK15126 203 SLADCMAFGDAMNDREM 219 (272)
T ss_pred CHHHeEEecCCHHHHHH
Confidence 44689999999999443
No 39
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=39.62 E-value=14 Score=25.78 Aligned_cols=18 Identities=17% Similarity=0.158 Sum_probs=14.0
Q ss_pred CCCeEEEcCCccccCCCc
Q 038057 27 LAPALYVLGDSLLDSGNN 44 (80)
Q Consensus 27 ~~~~if~FGDSlsDtGN~ 44 (80)
....+++||||.+|..-.
T Consensus 214 ~~~e~i~~GD~~NDi~m~ 231 (272)
T PRK10530 214 SMKNVVAFGDNFNDISML 231 (272)
T ss_pred CHHHeEEeCCChhhHHHH
Confidence 446899999999995443
No 40
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=39.44 E-value=13 Score=26.14 Aligned_cols=18 Identities=28% Similarity=0.010 Sum_probs=14.7
Q ss_pred CCCeEEEcCCccccCCCc
Q 038057 27 LAPALYVLGDSLLDSGNN 44 (80)
Q Consensus 27 ~~~~if~FGDSlsDtGN~ 44 (80)
....+++||||.+|..-.
T Consensus 182 ~~~~~i~~GD~~ND~~ml 199 (249)
T TIGR01485 182 EPSQTLVCGDSGNDIELF 199 (249)
T ss_pred CccCEEEEECChhHHHHH
Confidence 467899999999996554
No 41
>PF12276 DUF3617: Protein of unknown function (DUF3617); InterPro: IPR022061 This family of proteins is found in bacteria. Proteins in this family are typically between 155 and 179 amino acids in length. There is a single completely conserved residue C that may be functionally important.
Probab=39.05 E-value=36 Score=22.42 Aligned_cols=16 Identities=13% Similarity=0.181 Sum_probs=9.6
Q ss_pred cchhhHHHHHHHHHHH
Q 038057 2 ISKYSITSSFIFLLFI 17 (80)
Q Consensus 2 ~~~~~l~~~l~~l~~~ 17 (80)
|+|..+..++++++++
T Consensus 1 M~~~~~~~~~~~~~~~ 16 (162)
T PF12276_consen 1 MKRRLLLALALALLAL 16 (162)
T ss_pred CchHHHHHHHHHHHHh
Confidence 6777766665555443
No 42
>KOG3035 consensus Isoamyl acetate-hydrolyzing esterase [Lipid transport and metabolism]
Probab=38.26 E-value=16 Score=27.40 Aligned_cols=16 Identities=25% Similarity=0.561 Sum_probs=13.4
Q ss_pred CCCCeEEEcCCccccC
Q 038057 26 RLAPALYVLGDSLLDS 41 (80)
Q Consensus 26 ~~~~~if~FGDSlsDt 41 (80)
+-+++|+.||||++.-
T Consensus 4 ~~rp~i~LFGdSItq~ 19 (245)
T KOG3035|consen 4 PMRPRIVLFGDSITQF 19 (245)
T ss_pred cccccEEEecchhhhh
Confidence 4679999999998863
No 43
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=38.03 E-value=18 Score=23.70 Aligned_cols=11 Identities=18% Similarity=0.492 Sum_probs=9.5
Q ss_pred eEEEcCCcccc
Q 038057 30 ALYVLGDSLLD 40 (80)
Q Consensus 30 ~if~FGDSlsD 40 (80)
+|.++|||++.
T Consensus 2 ~i~~~GDSit~ 12 (188)
T cd01827 2 KVACVGNSITE 12 (188)
T ss_pred eEEEEeccccc
Confidence 57899999987
No 44
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=37.67 E-value=14 Score=24.11 Aligned_cols=11 Identities=36% Similarity=0.610 Sum_probs=9.5
Q ss_pred eEEEcCCcccc
Q 038057 30 ALYVLGDSLLD 40 (80)
Q Consensus 30 ~if~FGDSlsD 40 (80)
+|..+|||+++
T Consensus 1 ~i~~~GDSit~ 11 (185)
T cd01832 1 RYVALGDSITE 11 (185)
T ss_pred CeeEecchhhc
Confidence 37899999997
No 45
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=37.03 E-value=16 Score=24.73 Aligned_cols=15 Identities=33% Similarity=0.175 Sum_probs=12.5
Q ss_pred CCCeEEEcCCccccC
Q 038057 27 LAPALYVLGDSLLDS 41 (80)
Q Consensus 27 ~~~~if~FGDSlsDt 41 (80)
....+++||||.+|.
T Consensus 164 ~~~~~i~~GD~~NDi 178 (225)
T TIGR01482 164 KPGETLVCGDSENDI 178 (225)
T ss_pred CHHHEEEECCCHhhH
Confidence 346799999999994
No 46
>PRK10626 hypothetical protein; Provisional
Probab=36.52 E-value=37 Score=25.25 Aligned_cols=12 Identities=17% Similarity=0.282 Sum_probs=8.9
Q ss_pred CcchhhHHHHHH
Q 038057 1 MISKYSITSSFI 12 (80)
Q Consensus 1 ~~~~~~l~~~l~ 12 (80)
||+|+.+.++|+
T Consensus 1 ~mrk~~l~~~L~ 12 (239)
T PRK10626 1 MMRKMLLAALLS 12 (239)
T ss_pred ChHHHHHHHHHH
Confidence 899998766554
No 47
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=35.86 E-value=21 Score=23.37 Aligned_cols=11 Identities=36% Similarity=0.495 Sum_probs=9.7
Q ss_pred eEEEcCCcccc
Q 038057 30 ALYVLGDSLLD 40 (80)
Q Consensus 30 ~if~FGDSlsD 40 (80)
+|..+|||+++
T Consensus 2 ~i~~~GDSi~~ 12 (183)
T cd04501 2 RVVCLGDSITY 12 (183)
T ss_pred eEEEEcccccc
Confidence 47899999998
No 48
>PF07437 YfaZ: YfaZ precursor; InterPro: IPR009998 This family contains the precursor of the bacterial protein YfaZ (approximately 180 residues long). Many members of this family are hypothetical proteins.
Probab=35.50 E-value=35 Score=23.96 Aligned_cols=15 Identities=27% Similarity=0.501 Sum_probs=9.6
Q ss_pred cchhhHHHHHHHHHH
Q 038057 2 ISKYSITSSFIFLLF 16 (80)
Q Consensus 2 ~~~~~l~~~l~~l~~ 16 (80)
|||+.+.+.+.+++.
T Consensus 1 m~k~~~a~~~~l~~~ 15 (180)
T PF07437_consen 1 MKKFLLASAAALLLV 15 (180)
T ss_pred CchHHHHHHHHHHHH
Confidence 889887665444433
No 49
>COG3015 CutF Uncharacterized lipoprotein NlpE involved in copper resistance [Cell envelope biogenesis, outer membrane / Inorganic ion transport and metabolism]
Probab=35.39 E-value=34 Score=24.48 Aligned_cols=17 Identities=24% Similarity=0.350 Sum_probs=12.7
Q ss_pred CcchhhHHHHHHHHHHH
Q 038057 1 MISKYSITSSFIFLLFI 17 (80)
Q Consensus 1 ~~~~~~l~~~l~~l~~~ 17 (80)
||||.+++++.++|.++
T Consensus 1 mvkk~i~tl~a~~l~l~ 17 (178)
T COG3015 1 MVKKAIVTLMAVILTLM 17 (178)
T ss_pred CcHHHHHHHHHHHHHHh
Confidence 89999988777765444
No 50
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=35.04 E-value=20 Score=25.63 Aligned_cols=18 Identities=28% Similarity=0.047 Sum_probs=14.6
Q ss_pred CC-CeEEEcCCccccCCCc
Q 038057 27 LA-PALYVLGDSLLDSGNN 44 (80)
Q Consensus 27 ~~-~~if~FGDSlsDtGN~ 44 (80)
.. ..+++||||.+|..-.
T Consensus 205 ~~~~~v~~~GDs~NDi~m~ 223 (273)
T PRK00192 205 QDGVETIALGDSPNDLPML 223 (273)
T ss_pred cCCceEEEEcCChhhHHHH
Confidence 45 8999999999996544
No 51
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=35.03 E-value=22 Score=22.99 Aligned_cols=14 Identities=29% Similarity=0.641 Sum_probs=11.7
Q ss_pred CeEEEcCCccccCC
Q 038057 29 PALYVLGDSLLDSG 42 (80)
Q Consensus 29 ~~if~FGDSlsDtG 42 (80)
..+.++|||++.-+
T Consensus 2 ~~v~~~GDSit~g~ 15 (191)
T cd01834 2 DRIVFIGNSITDRG 15 (191)
T ss_pred CEEEEeCCChhhcc
Confidence 47899999999954
No 52
>PRK10002 outer membrane protein F; Provisional
Probab=35.02 E-value=30 Score=26.17 Aligned_cols=11 Identities=9% Similarity=0.217 Sum_probs=7.3
Q ss_pred CcchhhHHHHH
Q 038057 1 MISKYSITSSF 11 (80)
Q Consensus 1 ~~~~~~l~~~l 11 (80)
||||-.|.+..
T Consensus 1 ~mkktl~a~a~ 11 (362)
T PRK10002 1 MMKRNILAVIV 11 (362)
T ss_pred CccHhHHHHHH
Confidence 89996654433
No 53
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=34.82 E-value=18 Score=25.33 Aligned_cols=18 Identities=17% Similarity=0.141 Sum_probs=14.1
Q ss_pred CCCeEEEcCCccccCCCc
Q 038057 27 LAPALYVLGDSLLDSGNN 44 (80)
Q Consensus 27 ~~~~if~FGDSlsDtGN~ 44 (80)
....+++||||.+|..-.
T Consensus 203 ~~~~~~~~GD~~nD~~m~ 220 (256)
T TIGR00099 203 SLEDVIAFGDGMNDIEML 220 (256)
T ss_pred CHHHEEEeCCcHHhHHHH
Confidence 446899999999995443
No 54
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=34.81 E-value=10 Score=24.54 Aligned_cols=14 Identities=29% Similarity=0.399 Sum_probs=11.9
Q ss_pred CCeEEEcCCccccC
Q 038057 28 APALYVLGDSLLDS 41 (80)
Q Consensus 28 ~~~if~FGDSlsDt 41 (80)
...++.+|||.+|.
T Consensus 158 ~~~~~~iGDs~~D~ 171 (177)
T TIGR01488 158 LKKIIAVGDSVNDL 171 (177)
T ss_pred HHHEEEEeCCHHHH
Confidence 46789999999994
No 55
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=34.20 E-value=15 Score=26.26 Aligned_cols=16 Identities=31% Similarity=0.194 Sum_probs=12.4
Q ss_pred CCCeEEEcCCccccCC
Q 038057 27 LAPALYVLGDSLLDSG 42 (80)
Q Consensus 27 ~~~~if~FGDSlsDtG 42 (80)
....++++|||-+|..
T Consensus 180 ~~~~vl~aGDSgND~~ 195 (247)
T PF05116_consen 180 PPEQVLVAGDSGNDLE 195 (247)
T ss_dssp -GGGEEEEESSGGGHH
T ss_pred CHHHEEEEeCCCCcHH
Confidence 4468899999999943
No 56
>PLN02382 probable sucrose-phosphatase
Probab=33.34 E-value=17 Score=28.33 Aligned_cols=16 Identities=31% Similarity=0.183 Sum_probs=13.0
Q ss_pred CCCeEEEcCCccccCC
Q 038057 27 LAPALYVLGDSLLDSG 42 (80)
Q Consensus 27 ~~~~if~FGDSlsDtG 42 (80)
....+++||||.+|..
T Consensus 193 ~~~~~iafGDs~NDle 208 (413)
T PLN02382 193 APVNTLVCGDSGNDAE 208 (413)
T ss_pred ChhcEEEEeCCHHHHH
Confidence 4568899999999943
No 57
>cd04506 SGNH_hydrolase_YpmR_like Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. This subfamily contains sequences similar to Bacillus YpmR.
Probab=32.97 E-value=20 Score=23.98 Aligned_cols=12 Identities=42% Similarity=0.686 Sum_probs=10.0
Q ss_pred eEEEcCCccccC
Q 038057 30 ALYVLGDSLLDS 41 (80)
Q Consensus 30 ~if~FGDSlsDt 41 (80)
+|.++|||++.-
T Consensus 1 ~i~~~GDSit~G 12 (204)
T cd04506 1 KIVALGDSLTEG 12 (204)
T ss_pred CEeEEeccccCc
Confidence 478999999983
No 58
>cd01831 Endoglucanase_E_like Endoglucanase E-like members of the SGNH hydrolase family; Endoglucanase E catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans.
Probab=32.94 E-value=20 Score=23.45 Aligned_cols=11 Identities=27% Similarity=0.437 Sum_probs=9.3
Q ss_pred eEEEcCCcccc
Q 038057 30 ALYVLGDSLLD 40 (80)
Q Consensus 30 ~if~FGDSlsD 40 (80)
+|.++|||++.
T Consensus 1 ~i~~iGDSit~ 11 (169)
T cd01831 1 KIEFIGDSITC 11 (169)
T ss_pred CEEEEeccccc
Confidence 47899999987
No 59
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=32.89 E-value=25 Score=22.62 Aligned_cols=11 Identities=45% Similarity=0.709 Sum_probs=9.2
Q ss_pred eEEEcCCcccc
Q 038057 30 ALYVLGDSLLD 40 (80)
Q Consensus 30 ~if~FGDSlsD 40 (80)
+|..+|||++.
T Consensus 2 ~i~~~GDSit~ 12 (177)
T cd01822 2 TILALGDSLTA 12 (177)
T ss_pred eEEEEcccccc
Confidence 58899999974
No 60
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=32.54 E-value=21 Score=24.72 Aligned_cols=16 Identities=31% Similarity=0.233 Sum_probs=12.7
Q ss_pred CCeEEEcCCccccCCC
Q 038057 28 APALYVLGDSLLDSGN 43 (80)
Q Consensus 28 ~~~if~FGDSlsDtGN 43 (80)
...++.||||.+|..-
T Consensus 175 ~~~~i~~GD~~nD~~m 190 (236)
T TIGR02471 175 LEQILVAGDSGNDEEM 190 (236)
T ss_pred HHHEEEEcCCccHHHH
Confidence 3478999999999643
No 61
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=32.12 E-value=54 Score=20.77 Aligned_cols=21 Identities=5% Similarity=0.045 Sum_probs=12.3
Q ss_pred cchhhHHHHHHHHHHHHhhcc
Q 038057 2 ISKYSITSSFIFLLFITSSTD 22 (80)
Q Consensus 2 ~~~~~l~~~l~~l~~~~~~~~ 22 (80)
|||..+.+..++.+++++.++
T Consensus 1 mk~klll~aviLs~~LLaGCA 21 (85)
T PRK09973 1 MKTIFTVGAVVLATCLLSGCV 21 (85)
T ss_pred CchhHHHHHHHHHHHHHHHcC
Confidence 677777666666444444433
No 62
>PF06517 Orthopox_A43R: Orthopoxvirus A43R protein; InterPro: IPR009487 This family consists of several Orthopoxvirus A43R proteins. The function of this family is unknown.
Probab=32.04 E-value=28 Score=25.12 Aligned_cols=22 Identities=32% Similarity=0.339 Sum_probs=15.2
Q ss_pred CcchhhHHHHHHHHHHHHhhcc
Q 038057 1 MISKYSITSSFIFLLFITSSTD 22 (80)
Q Consensus 1 ~~~~~~l~~~l~~l~~~~~~~~ 22 (80)
||.||.+.++-+-.+.+++...
T Consensus 1 mm~kw~isilt~si~pvLsy~s 22 (203)
T PF06517_consen 1 MMRKWSISILTISILPVLSYVS 22 (203)
T ss_pred CcceeeehhhHHHHHHHHhhhc
Confidence 8999998777665555555443
No 63
>PRK10797 glutamate and aspartate transporter subunit; Provisional
Probab=31.37 E-value=33 Score=25.07 Aligned_cols=21 Identities=10% Similarity=0.013 Sum_probs=12.7
Q ss_pred cchhhHHHHHHHHHHHHhhcc
Q 038057 2 ISKYSITSSFIFLLFITSSTD 22 (80)
Q Consensus 2 ~~~~~l~~~l~~l~~~~~~~~ 22 (80)
|+|+.+++.++.+.-.++++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~ 23 (302)
T PRK10797 3 LRKLATALLLLGLSAGLAQAE 23 (302)
T ss_pred hhHHHHHHHHHHHhhhhhccc
Confidence 677777666666644444444
No 64
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=31.37 E-value=22 Score=23.04 Aligned_cols=12 Identities=58% Similarity=0.797 Sum_probs=9.8
Q ss_pred eEEEcCCccccC
Q 038057 30 ALYVLGDSLLDS 41 (80)
Q Consensus 30 ~if~FGDSlsDt 41 (80)
+|+++|||++.-
T Consensus 1 ~v~~~GdSi~~~ 12 (169)
T cd01828 1 ALVFLGDSLTEG 12 (169)
T ss_pred CEEEecchhhcc
Confidence 478999999973
No 65
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=30.88 E-value=32 Score=22.72 Aligned_cols=12 Identities=50% Similarity=0.661 Sum_probs=10.4
Q ss_pred CeEEEcCCcccc
Q 038057 29 PALYVLGDSLLD 40 (80)
Q Consensus 29 ~~if~FGDSlsD 40 (80)
..|..+|||++.
T Consensus 2 ~~i~~lGDSit~ 13 (193)
T cd01835 2 KRLIVVGDSLVY 13 (193)
T ss_pred cEEEEEcCcccc
Confidence 478999999996
No 66
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=30.50 E-value=1.2e+02 Score=19.58 Aligned_cols=24 Identities=4% Similarity=0.083 Sum_probs=13.3
Q ss_pred cchhhHHHHHHHHHHHHhhccccc
Q 038057 2 ISKYSITSSFIFLLFITSSTDATS 25 (80)
Q Consensus 2 ~~~~~l~~~l~~l~~~~~~~~~~~ 25 (80)
|.+-.++++++.+.+.++.+++.+
T Consensus 1 MaRRlwiLslLAVtLtVALAAPsQ 24 (100)
T PF05984_consen 1 MARRLWILSLLAVTLTVALAAPSQ 24 (100)
T ss_pred CchhhHHHHHHHHHHHHHhhcccc
Confidence 344444556666666666666433
No 67
>PLN02954 phosphoserine phosphatase
Probab=30.03 E-value=23 Score=24.07 Aligned_cols=16 Identities=19% Similarity=0.306 Sum_probs=13.1
Q ss_pred CCeEEEcCCccccCCC
Q 038057 28 APALYVLGDSLLDSGN 43 (80)
Q Consensus 28 ~~~if~FGDSlsDtGN 43 (80)
.+.++++|||.+|.-.
T Consensus 169 ~~~~i~iGDs~~Di~a 184 (224)
T PLN02954 169 YKTMVMIGDGATDLEA 184 (224)
T ss_pred CCceEEEeCCHHHHHh
Confidence 4678889999999655
No 68
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=29.68 E-value=28 Score=22.65 Aligned_cols=12 Identities=25% Similarity=0.506 Sum_probs=9.8
Q ss_pred eEEEcCCccccC
Q 038057 30 ALYVLGDSLLDS 41 (80)
Q Consensus 30 ~if~FGDSlsDt 41 (80)
+|..+|||++.-
T Consensus 1 ~i~~~GDSit~g 12 (199)
T cd01838 1 KIVLFGDSITQF 12 (199)
T ss_pred CEEEecCccccc
Confidence 478999999864
No 69
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=29.10 E-value=24 Score=24.83 Aligned_cols=15 Identities=33% Similarity=0.018 Sum_probs=12.4
Q ss_pred CeEEEcCCccccCCC
Q 038057 29 PALYVLGDSLLDSGN 43 (80)
Q Consensus 29 ~~if~FGDSlsDtGN 43 (80)
..++.||||.+|..-
T Consensus 200 ~~~i~~GD~~nD~~m 214 (225)
T TIGR02461 200 IESVGLGDSENDFPM 214 (225)
T ss_pred ccEEEEcCCHHHHHH
Confidence 478999999999644
No 70
>PF08155 NOGCT: NOGCT (NUC087) domain; InterPro: IPR012973 This C-terminal domain is found in the NOG subfamily of nucleolar GTP-binding proteins [].
Probab=28.37 E-value=25 Score=20.70 Aligned_cols=12 Identities=50% Similarity=0.883 Sum_probs=9.7
Q ss_pred CCCCCCchhccC
Q 038057 69 RFSNGKTVADFI 80 (80)
Q Consensus 69 RfSdG~~~~Dfi 80 (80)
-+-||+++.|||
T Consensus 40 EI~~GkNIaDfi 51 (55)
T PF08155_consen 40 EIWDGKNIADFI 51 (55)
T ss_pred hhhcCcchhhcc
Confidence 456899999986
No 71
>PF00879 Defensin_propep: Defensin propeptide The pattern for this Prosite entry doesn't match the propeptide.; InterPro: IPR002366 Defensins are 2-6 kDa, cationic, microbicidal peptides active against many Gram-negative and Gram-positive bacteria, fungi, and enveloped viruses [], containing three pairs of intramolecular disulphide bonds []. On the basis of their size and pattern of disulphide bonding, mammalian defensins are classified into alpha, beta and theta categories. Alpha-defensins, which have been identified in humans, monkeys and several rodent species, are particularly abundant in neutrophils, certain macrophage populations and Paneth cells of the small intestine. Every mammalian species explored thus far has beta-defensins. In cows, as many as 13 beta-defensins exist in neutrophils. However, in other species, beta-defensins are more often produced by epithelial cells lining various organs (e.g. the epidermis, bronchial tree and genitourinary tract). Theta-defensins are cyclic and have so far only been identified in primate phagocytes. Defensins are produced constitutively and/or in response to microbial products or proinflammatory cytokines. Some defensins are also called corticostatins (CS) because they inhibit corticotropin-stimulated corticosteroid production. The mechanism(s) by which microorganisms are killed and/or inactivated by defensins is not understood completely. However, it is generally believed that killing is a consequence of disruption of the microbial membrane. The polar topology of defensins, with spatially separated charged and hydrophobic regions, allows them to insert themselves into the phospholipid membranes so that their hydrophobic regions are buried within the lipid membrane interior and their charged (mostly cationic) regions interact with anionic phospholipid head groups and water. Subsequently, some defensins can aggregate to form `channel-like' pores; others might bind to and cover the microbial membrane in a `carpet-like' manner. The net outcome is the disruption of membrane integrity and function, which ultimately leads to the lysis of microorganisms. Some defensins are synthesized as propeptides which may be relevant to this process - in neutrophils only the mature peptides have been identified but in Paneth cells, the propeptide is stored in vesicles [] and appears to be cleaved by trypsin on activation. ; GO: 0006952 defense response
Probab=28.20 E-value=70 Score=18.55 Aligned_cols=16 Identities=6% Similarity=0.353 Sum_probs=10.6
Q ss_pred cchhhHHHHHHHHHHH
Q 038057 2 ISKYSITSSFIFLLFI 17 (80)
Q Consensus 2 ~~~~~l~~~l~~l~~~ 17 (80)
|+.+.|+..++++.+.
T Consensus 1 MRTL~LLaAlLLlAlq 16 (52)
T PF00879_consen 1 MRTLALLAALLLLALQ 16 (52)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 7778877776655444
No 72
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=27.91 E-value=92 Score=21.79 Aligned_cols=12 Identities=8% Similarity=0.052 Sum_probs=8.7
Q ss_pred CcchhhHHHHHH
Q 038057 1 MISKYSITSSFI 12 (80)
Q Consensus 1 ~~~~~~l~~~l~ 12 (80)
||++|.+.++++
T Consensus 1 ~~~~~~~~~~~~ 12 (190)
T PRK10903 1 MFKSTLAAMAAV 12 (190)
T ss_pred ChHHHHHHHHHH
Confidence 899998866533
No 73
>PRK02944 OxaA-like protein precursor; Validated
Probab=27.90 E-value=76 Score=23.28 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=12.1
Q ss_pred CcchhhHHHHHHHHHHHHhhcc
Q 038057 1 MISKYSITSSFIFLLFITSSTD 22 (80)
Q Consensus 1 ~~~~~~l~~~l~~l~~~~~~~~ 22 (80)
|+||+.+...+++++++++.+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~gc~ 22 (255)
T PRK02944 1 MKKKLGLLAMVVALMAILAGCS 22 (255)
T ss_pred CchHHHHHHHHHHHHHHHhccC
Confidence 6666665545555555555443
No 74
>PRK13861 type IV secretion system protein VirB9; Provisional
Probab=27.63 E-value=37 Score=25.63 Aligned_cols=13 Identities=31% Similarity=0.439 Sum_probs=9.4
Q ss_pred CcchhhHHHHHHH
Q 038057 1 MISKYSITSSFIF 13 (80)
Q Consensus 1 ~~~~~~l~~~l~~ 13 (80)
||+|+++++++++
T Consensus 1 ~~~~~~~~~~~~~ 13 (292)
T PRK13861 1 MIKKLFLTLACLL 13 (292)
T ss_pred ChhHHHHHHHHHH
Confidence 8999887666553
No 75
>COG2825 HlpA Outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=27.51 E-value=65 Score=22.37 Aligned_cols=21 Identities=14% Similarity=0.142 Sum_probs=11.0
Q ss_pred cchhhHHHHHHHHHHHHhhcc
Q 038057 2 ISKYSITSSFIFLLFITSSTD 22 (80)
Q Consensus 2 ~~~~~l~~~l~~l~~~~~~~~ 22 (80)
|+++.+..++.++++..++++
T Consensus 1 Mk~~~~~~~l~l~la~~~s~~ 21 (170)
T COG2825 1 MKKRLLAALLGLALATSASAA 21 (170)
T ss_pred CchHHHHHHHHHHHHHHHHHH
Confidence 446665555555555544443
No 76
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=27.14 E-value=27 Score=23.44 Aligned_cols=16 Identities=25% Similarity=0.245 Sum_probs=12.6
Q ss_pred CCCeEEEcCCccccCC
Q 038057 27 LAPALYVLGDSLLDSG 42 (80)
Q Consensus 27 ~~~~if~FGDSlsDtG 42 (80)
....+++||||.+|..
T Consensus 178 ~~~~~~~~GD~~nD~~ 193 (204)
T TIGR01484 178 KRDEILAFGDSGNDEE 193 (204)
T ss_pred CHHHEEEEcCCHHHHH
Confidence 3457999999999953
No 77
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=26.86 E-value=34 Score=22.46 Aligned_cols=11 Identities=55% Similarity=0.652 Sum_probs=9.4
Q ss_pred eEEEcCCcccc
Q 038057 30 ALYVLGDSLLD 40 (80)
Q Consensus 30 ~if~FGDSlsD 40 (80)
.|.++|||++.
T Consensus 4 ~i~~~GDSit~ 14 (191)
T cd01836 4 RLLVLGDSTAA 14 (191)
T ss_pred EEEEEeccccc
Confidence 68899999984
No 78
>PF05643 DUF799: Putative bacterial lipoprotein (DUF799); InterPro: IPR008517 This family consists of several bacterial proteins of unknown function. Some of the family members are described as putative lipoproteins.
Probab=26.27 E-value=36 Score=24.93 Aligned_cols=12 Identities=8% Similarity=0.102 Sum_probs=7.7
Q ss_pred cchhhHHHHHHH
Q 038057 2 ISKYSITSSFIF 13 (80)
Q Consensus 2 ~~~~~l~~~l~~ 13 (80)
|||+.+.++.++
T Consensus 1 mk~l~~~l~~~l 12 (215)
T PF05643_consen 1 MKKLILGLAAAL 12 (215)
T ss_pred ChhHHHHHHHHH
Confidence 788887554433
No 79
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=25.86 E-value=75 Score=18.92 Aligned_cols=15 Identities=27% Similarity=0.439 Sum_probs=10.9
Q ss_pred cchhhHHHHHHHHHH
Q 038057 2 ISKYSITSSFIFLLF 16 (80)
Q Consensus 2 ~~~~~l~~~l~~l~~ 16 (80)
|-|++|+++++++.-
T Consensus 9 mtriVLLISfiIlfg 23 (59)
T PF11119_consen 9 MTRIVLLISFIILFG 23 (59)
T ss_pred HHHHHHHHHHHHHHH
Confidence 668888888776654
No 80
>PRK10780 periplasmic chaperone; Provisional
Probab=25.61 E-value=63 Score=21.84 Aligned_cols=14 Identities=14% Similarity=0.358 Sum_probs=8.8
Q ss_pred cchhhHHHHHHHHH
Q 038057 2 ISKYSITSSFIFLL 15 (80)
Q Consensus 2 ~~~~~l~~~l~~l~ 15 (80)
|||+++.+++.+++
T Consensus 1 Mkk~~~~~~l~l~~ 14 (165)
T PRK10780 1 MKKWLLAAGLGLAL 14 (165)
T ss_pred ChHHHHHHHHHHHH
Confidence 78888765554443
No 81
>PF11777 DUF3316: Protein of unknown function (DUF3316); InterPro: IPR016879 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=25.44 E-value=70 Score=20.47 Aligned_cols=11 Identities=9% Similarity=0.308 Sum_probs=6.9
Q ss_pred CCCCCCCCchh
Q 038057 67 TGRFSNGKTVA 77 (80)
Q Consensus 67 tGRfSdG~~~~ 77 (80)
.-|.+|+++-+
T Consensus 76 s~~l~d~~V~v 86 (114)
T PF11777_consen 76 STRLDDSNVSV 86 (114)
T ss_pred ceEeccceEeH
Confidence 44677777654
No 82
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=25.10 E-value=27 Score=20.59 Aligned_cols=15 Identities=33% Similarity=0.410 Sum_probs=12.5
Q ss_pred CCCeEEEcCCccccC
Q 038057 27 LAPALYVLGDSLLDS 41 (80)
Q Consensus 27 ~~~~if~FGDSlsDt 41 (80)
....++.+|||.+|.
T Consensus 112 ~~~~~~~igD~~~d~ 126 (139)
T cd01427 112 DPEEVLMVGDSLNDI 126 (139)
T ss_pred ChhhEEEeCCCHHHH
Confidence 467899999999884
No 83
>COG2854 Ttg2D ABC-type transport system involved in resistance to organic solvents, auxiliary component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.05 E-value=66 Score=23.37 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=10.5
Q ss_pred CcchhhHHHHHHHHHHHHhh
Q 038057 1 MISKYSITSSFIFLLFITSS 20 (80)
Q Consensus 1 ~~~~~~l~~~l~~l~~~~~~ 20 (80)
||+|+.+...+++..+..+.
T Consensus 2 ~m~k~l~~~~ll~~a~a~~~ 21 (202)
T COG2854 2 MMKKSLTILALLVIAFASSL 21 (202)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 56666655555444444333
No 84
>PRK11443 lipoprotein; Provisional
Probab=24.71 E-value=54 Score=21.83 Aligned_cols=12 Identities=8% Similarity=0.188 Sum_probs=6.5
Q ss_pred cchhhHHHHHHH
Q 038057 2 ISKYSITSSFIF 13 (80)
Q Consensus 2 ~~~~~l~~~l~~ 13 (80)
|||+++.+++++
T Consensus 1 Mk~~~~~~~~~l 12 (124)
T PRK11443 1 MKKFIAPLLALL 12 (124)
T ss_pred ChHHHHHHHHHH
Confidence 676665444443
No 85
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=24.59 E-value=1.1e+02 Score=21.60 Aligned_cols=32 Identities=9% Similarity=0.072 Sum_probs=15.4
Q ss_pred CcchhhHHHHHHHHHHHHhhcc--cccCCCCeEEE
Q 038057 1 MISKYSITSSFIFLLFITSSTD--ATSRLAPALYV 33 (80)
Q Consensus 1 ~~~~~~l~~~l~~l~~~~~~~~--~~~~~~~~if~ 33 (80)
||+|..++.+++ ++...+.|+ .-.+..|.+.+
T Consensus 1 m~~~~~~~~~~~-~~~~~~~a~~~~~~~~~p~v~~ 34 (184)
T TIGR01626 1 MKKQILAAVCGV-IFPSSAWAHNLQVEQSVPSVGV 34 (184)
T ss_pred CchhHHHHHHHH-HhHHHHhhhhhhcCCcCCceEe
Confidence 777777744433 222223332 12356666644
No 86
>COG2755 TesA Lysophospholipase L1 and related esterases [Amino acid transport and metabolism]
Probab=24.57 E-value=38 Score=22.77 Aligned_cols=14 Identities=36% Similarity=0.458 Sum_probs=11.5
Q ss_pred eEEEcCCccccCCC
Q 038057 30 ALYVLGDSLLDSGN 43 (80)
Q Consensus 30 ~if~FGDSlsDtGN 43 (80)
.++.||||+++--.
T Consensus 10 ~i~~~GDSlt~g~~ 23 (216)
T COG2755 10 TVLALGDSLTAGYG 23 (216)
T ss_pred eEEEeccchhcccc
Confidence 79999999988433
No 87
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=24.50 E-value=41 Score=24.99 Aligned_cols=19 Identities=32% Similarity=0.338 Sum_probs=14.6
Q ss_pred CCCCeEEEcCCccccCCCc
Q 038057 26 RLAPALYVLGDSLLDSGNN 44 (80)
Q Consensus 26 ~~~~~if~FGDSlsDtGN~ 44 (80)
+..+.++.+|||+.|.+-.
T Consensus 177 ~~R~NvlLlGDslgD~~Ma 195 (246)
T PF05822_consen 177 KKRTNVLLLGDSLGDLHMA 195 (246)
T ss_dssp TT--EEEEEESSSGGGGTT
T ss_pred ccCCcEEEecCccCChHhh
Confidence 5678999999999998764
No 88
>COG3026 RseB Negative regulator of sigma E activity [Signal transduction mechanisms]
Probab=24.00 E-value=75 Score=24.71 Aligned_cols=22 Identities=5% Similarity=0.117 Sum_probs=16.1
Q ss_pred cchhhHHHHHHHHHHHHhhccc
Q 038057 2 ISKYSITSSFIFLLFITSSTDA 23 (80)
Q Consensus 2 ~~~~~l~~~l~~l~~~~~~~~~ 23 (80)
||+.....++++++++++.+++
T Consensus 1 mk~l~~s~~ll~~sl~~s~~a~ 22 (320)
T COG3026 1 MKQLWFSLLLLLGSLLLSAAAS 22 (320)
T ss_pred CchHHHHHHHHHHHHhhhhhhh
Confidence 6777777777877777766664
No 89
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=23.66 E-value=38 Score=23.09 Aligned_cols=14 Identities=29% Similarity=0.589 Sum_probs=11.8
Q ss_pred CCCeEEEcCCcccc
Q 038057 27 LAPALYVLGDSLLD 40 (80)
Q Consensus 27 ~~~~if~FGDSlsD 40 (80)
....|..+|||++.
T Consensus 31 ~~~~iv~lGDSit~ 44 (214)
T cd01820 31 KEPDVVFIGDSITQ 44 (214)
T ss_pred CCCCEEEECchHhh
Confidence 34689999999988
No 90
>PF06615 DUF1147: Protein of unknown function (DUF1147); InterPro: IPR009527 This family consists of several short Circovirus proteins of unknown function.
Probab=23.61 E-value=45 Score=19.42 Aligned_cols=12 Identities=25% Similarity=0.661 Sum_probs=8.2
Q ss_pred CcchhhHHHHHH
Q 038057 1 MISKYSITSSFI 12 (80)
Q Consensus 1 ~~~~~~l~~~l~ 12 (80)
|.|||.++..|+
T Consensus 40 mvkkwlllmtfm 51 (59)
T PF06615_consen 40 MVKKWLLLMTFM 51 (59)
T ss_pred HHHHHHHHHHHH
Confidence 678888765554
No 91
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=23.53 E-value=52 Score=21.29 Aligned_cols=16 Identities=19% Similarity=0.285 Sum_probs=12.8
Q ss_pred CCeEEEcCCccccCCC
Q 038057 28 APALYVLGDSLLDSGN 43 (80)
Q Consensus 28 ~~~if~FGDSlsDtGN 43 (80)
...++..|||.+|.-.
T Consensus 162 ~~~~i~iGD~~~D~~a 177 (188)
T TIGR01489 162 YQHIIYIGDGVTDVCP 177 (188)
T ss_pred CceEEEECCCcchhch
Confidence 5678888999999543
No 92
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=23.53 E-value=31 Score=22.79 Aligned_cols=12 Identities=42% Similarity=0.695 Sum_probs=9.3
Q ss_pred eEEEcCCccccC
Q 038057 30 ALYVLGDSLLDS 41 (80)
Q Consensus 30 ~if~FGDSlsDt 41 (80)
+|.++|||++..
T Consensus 1 ril~iGDS~~~g 12 (200)
T cd01829 1 RVLVIGDSLAQG 12 (200)
T ss_pred CEEEEechHHHH
Confidence 367889999874
No 93
>PRK10053 hypothetical protein; Provisional
Probab=23.51 E-value=78 Score=21.35 Aligned_cols=13 Identities=8% Similarity=0.143 Sum_probs=8.8
Q ss_pred cchhhHHHHHHHH
Q 038057 2 ISKYSITSSFIFL 14 (80)
Q Consensus 2 ~~~~~l~~~l~~l 14 (80)
|||..++++++++
T Consensus 1 MKK~~~~~~~~~~ 13 (130)
T PRK10053 1 MKLQAIALASFLV 13 (130)
T ss_pred CcHHHHHHHHHHH
Confidence 7888776665544
No 94
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=23.51 E-value=1e+02 Score=18.60 Aligned_cols=14 Identities=21% Similarity=0.202 Sum_probs=6.7
Q ss_pred CcchhhHHHHHHHH
Q 038057 1 MISKYSITSSFIFL 14 (80)
Q Consensus 1 ~~~~~~l~~~l~~l 14 (80)
|-.|+++.++|.+.
T Consensus 1 MA~Kl~vialLC~a 14 (65)
T PF10731_consen 1 MASKLIVIALLCVA 14 (65)
T ss_pred CcchhhHHHHHHHH
Confidence 44565554444333
No 95
>PF10913 DUF2706: Protein of unknown function (DUF2706); InterPro: IPR024444 This family of proteins with unknown function appears to be restricted to Rickettsia spp.
Probab=23.28 E-value=1.2e+02 Score=17.93 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=14.0
Q ss_pred CcchhhHHHHHHHHHHHHhhcc
Q 038057 1 MISKYSITSSFIFLLFITSSTD 22 (80)
Q Consensus 1 ~~~~~~l~~~l~~l~~~~~~~~ 22 (80)
|+|.+.+...|+.+.-++|++-
T Consensus 1 mlk~lkf~lv~imlaqllsctp 22 (60)
T PF10913_consen 1 MLKSLKFLLVLIMLAQLLSCTP 22 (60)
T ss_pred ChhHHHHHHHHHHHHHHHcCCC
Confidence 6777777666666655555544
No 96
>PF06873 SerH: Cell surface immobilisation antigen SerH; InterPro: IPR009670 This entry consists of several cell surface immobilisation antigen SerH proteins which seem to be specific to Tetrahymena thermophila. The SerH locus of T. thermophila is one of several paralogous loci with genes encoding variants of the major cell surface protein known as the immobilisation antigen (i-ag) [].
Probab=23.22 E-value=77 Score=25.33 Aligned_cols=12 Identities=33% Similarity=0.282 Sum_probs=6.2
Q ss_pred CcchhhHHHHHH
Q 038057 1 MISKYSITSSFI 12 (80)
Q Consensus 1 ~~~~~~l~~~l~ 12 (80)
|+.|..|+.+++
T Consensus 1 M~~k~lii~Lii 12 (403)
T PF06873_consen 1 MQNKILIICLII 12 (403)
T ss_pred CcchhhHHHHHH
Confidence 555555544443
No 97
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=23.19 E-value=39 Score=19.18 Aligned_cols=19 Identities=11% Similarity=0.391 Sum_probs=8.2
Q ss_pred cchhhHHHHHHHHHHHHhh
Q 038057 2 ISKYSITSSFIFLLFITSS 20 (80)
Q Consensus 2 ~~~~~l~~~l~~l~~~~~~ 20 (80)
|||..+...+++.+++.++
T Consensus 1 MkKi~~~~i~~~~~~L~aC 19 (46)
T PF02402_consen 1 MKKIIFIGIFLLTMLLAAC 19 (46)
T ss_pred CcEEEEeHHHHHHHHHHHh
Confidence 5655543333333333333
No 98
>PLN02887 hydrolase family protein
Probab=23.02 E-value=37 Score=27.96 Aligned_cols=18 Identities=17% Similarity=0.110 Sum_probs=13.8
Q ss_pred CCCeEEEcCCccccCCCc
Q 038057 27 LAPALYVLGDSLLDSGNN 44 (80)
Q Consensus 27 ~~~~if~FGDSlsDtGN~ 44 (80)
....+++||||.+|..-.
T Consensus 522 ~~eeviAFGDs~NDIeML 539 (580)
T PLN02887 522 SPDEIMAIGDGENDIEML 539 (580)
T ss_pred CHHHEEEEecchhhHHHH
Confidence 345899999999995443
No 99
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=22.81 E-value=1e+02 Score=16.83 Aligned_cols=16 Identities=38% Similarity=0.640 Sum_probs=8.9
Q ss_pred cchhh--HHHHHHHHHHH
Q 038057 2 ISKYS--ITSSFIFLLFI 17 (80)
Q Consensus 2 ~~~~~--l~~~l~~l~~~ 17 (80)
++||+ ++.++.+++..
T Consensus 16 iqkwirnit~cfal~vv~ 33 (40)
T PF13124_consen 16 IQKWIRNITFCFALLVVV 33 (40)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 36776 55555555444
No 100
>PRK02710 plastocyanin; Provisional
Probab=22.47 E-value=1.9e+02 Score=18.42 Aligned_cols=14 Identities=7% Similarity=0.128 Sum_probs=8.2
Q ss_pred CcchhhHHHHHHHH
Q 038057 1 MISKYSITSSFIFL 14 (80)
Q Consensus 1 ~~~~~~l~~~l~~l 14 (80)
||+.+.+....+++
T Consensus 1 ~~~~~~~~~~~~~~ 14 (119)
T PRK02710 1 MAKRLRSIAAALVA 14 (119)
T ss_pred CchhHHHHHHHHHH
Confidence 77777755554433
No 101
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=22.23 E-value=85 Score=20.90 Aligned_cols=14 Identities=21% Similarity=0.195 Sum_probs=7.4
Q ss_pred CcchhhHHHHHHHH
Q 038057 1 MISKYSITSSFIFL 14 (80)
Q Consensus 1 ~~~~~~l~~~l~~l 14 (80)
|+||.++....+++
T Consensus 1 ~kkkl~~i~~i~l~ 14 (142)
T PRK07718 1 MKNKLIKIMLIILI 14 (142)
T ss_pred CcchHHHHHHHHHH
Confidence 56666655444433
No 102
>PRK09733 putative fimbrial protein; Provisional
Probab=22.23 E-value=87 Score=21.23 Aligned_cols=10 Identities=10% Similarity=0.132 Sum_probs=6.4
Q ss_pred CcchhhHHHH
Q 038057 1 MISKYSITSS 10 (80)
Q Consensus 1 ~~~~~~l~~~ 10 (80)
||||..+.+.
T Consensus 1 ~~k~~~~~~~ 10 (181)
T PRK09733 1 AFKKSLLVAG 10 (181)
T ss_pred CchhHHHHHH
Confidence 7887665443
No 103
>COG1930 CbiN ABC-type cobalt transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=21.83 E-value=1.1e+02 Score=19.98 Aligned_cols=14 Identities=21% Similarity=0.017 Sum_probs=7.7
Q ss_pred CcchhhHHHHHHHH
Q 038057 1 MISKYSITSSFIFL 14 (80)
Q Consensus 1 ~~~~~~l~~~l~~l 14 (80)
||||..+..+++++
T Consensus 1 m~kk~~~~ll~i~~ 14 (97)
T COG1930 1 MSKKHMLNLLAIGI 14 (97)
T ss_pred CchHHHHHHHHHHH
Confidence 77777554443333
No 104
>KOG4509 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.77 E-value=44 Score=24.61 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=16.7
Q ss_pred CCCCCCCCCCCCCCCCCchhc
Q 038057 58 YGEDFVNKSTGRFSNGKTVAD 78 (80)
Q Consensus 58 YG~~~~~~ptGRfSdG~~~~D 78 (80)
-|.+||..|.||||=|..-.|
T Consensus 211 RGLDYFK~p~~kfsLG~~DfD 231 (247)
T KOG4509|consen 211 RGLDYFKAPDGKFSLGACDFD 231 (247)
T ss_pred CccccccCCCCceeecccccc
Confidence 367899999999999875444
No 105
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=21.68 E-value=1e+02 Score=24.23 Aligned_cols=16 Identities=13% Similarity=0.181 Sum_probs=12.4
Q ss_pred CCCCeEEEcCCccccC
Q 038057 26 RLAPALYVLGDSLLDS 41 (80)
Q Consensus 26 ~~~~~if~FGDSlsDt 41 (80)
+....+.+-+|+..|.
T Consensus 26 ~~~~~VIlvsDn~aD~ 41 (337)
T COG2247 26 QNTTVVILVSDNEADL 41 (337)
T ss_pred cCceEEEEecchHHHH
Confidence 3444899999999993
No 106
>PRK11590 hypothetical protein; Provisional
Probab=21.58 E-value=59 Score=22.32 Aligned_cols=15 Identities=20% Similarity=-0.033 Sum_probs=11.8
Q ss_pred CCCeEEEcCCccccC
Q 038057 27 LAPALYVLGDSLLDS 41 (80)
Q Consensus 27 ~~~~if~FGDSlsDt 41 (80)
.....+..|||.+|.
T Consensus 175 ~~~~~~aY~Ds~~D~ 189 (211)
T PRK11590 175 PLRLYSGYSDSKQDN 189 (211)
T ss_pred CcceEEEecCCcccH
Confidence 445668999999993
No 107
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=21.56 E-value=50 Score=24.81 Aligned_cols=18 Identities=28% Similarity=0.243 Sum_probs=14.8
Q ss_pred CCCCeEEEcCCccccCCC
Q 038057 26 RLAPALYVLGDSLLDSGN 43 (80)
Q Consensus 26 ~~~~~if~FGDSlsDtGN 43 (80)
.....++++|||.+|...
T Consensus 209 ~~~~~vI~vGDs~~Dl~m 226 (277)
T TIGR01544 209 KDRSNIILLGDSQGDLRM 226 (277)
T ss_pred CCcceEEEECcChhhhhH
Confidence 456789999999999655
No 108
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=21.41 E-value=31 Score=22.69 Aligned_cols=17 Identities=24% Similarity=0.071 Sum_probs=13.0
Q ss_pred CCCeEEEcCCccccCCC
Q 038057 27 LAPALYVLGDSLLDSGN 43 (80)
Q Consensus 27 ~~~~if~FGDSlsDtGN 43 (80)
....++.+|||.+|.-.
T Consensus 162 ~~~~~i~iGDs~~D~~~ 178 (201)
T TIGR01491 162 SLTETVAVGDSKNDLPM 178 (201)
T ss_pred CHHHEEEEcCCHhHHHH
Confidence 34568999999999543
No 109
>COG3017 LolB Outer membrane lipoprotein involved in outer membrane biogenesis [Cell envelope biogenesis, outer membrane]
Probab=21.26 E-value=1e+02 Score=22.58 Aligned_cols=22 Identities=18% Similarity=0.155 Sum_probs=14.2
Q ss_pred CcchhhHHHHHHHHHHHHhhcc
Q 038057 1 MISKYSITSSFIFLLFITSSTD 22 (80)
Q Consensus 1 ~~~~~~l~~~l~~l~~~~~~~~ 22 (80)
|||+...+.+.+.++++++|+.
T Consensus 3 ~~~~~~~~l~~~As~LL~aC~~ 24 (206)
T COG3017 3 MMKRLLFLLLALASLLLTACTL 24 (206)
T ss_pred hHHHHHHHHHHHHHHHHHhccC
Confidence 5777776666666666665544
No 110
>PRK10449 heat-inducible protein; Provisional
Probab=21.26 E-value=88 Score=20.72 Aligned_cols=14 Identities=14% Similarity=0.256 Sum_probs=7.3
Q ss_pred cchhhHHHHHHHHH
Q 038057 2 ISKYSITSSFIFLL 15 (80)
Q Consensus 2 ~~~~~l~~~l~~l~ 15 (80)
|||..+.+++.+++
T Consensus 1 mk~~~~~~~~~~~l 14 (140)
T PRK10449 1 MKKVVALVALSLLM 14 (140)
T ss_pred ChhHHHHHHHHHHH
Confidence 67766544444333
No 111
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=20.82 E-value=33 Score=22.83 Aligned_cols=14 Identities=36% Similarity=0.489 Sum_probs=11.3
Q ss_pred CCeEEEcCCccccC
Q 038057 28 APALYVLGDSLLDS 41 (80)
Q Consensus 28 ~~~if~FGDSlsDt 41 (80)
.+.++.+|||.+|.
T Consensus 171 ~~~~~~~gDs~~D~ 184 (202)
T TIGR01490 171 LKDSYAYGDSISDL 184 (202)
T ss_pred HHHcEeeeCCcccH
Confidence 34778899999994
No 112
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=20.64 E-value=44 Score=22.27 Aligned_cols=14 Identities=29% Similarity=0.323 Sum_probs=11.5
Q ss_pred CCeEEEcCCccccC
Q 038057 28 APALYVLGDSLLDS 41 (80)
Q Consensus 28 ~~~if~FGDSlsDt 41 (80)
...++.+|||.+|.
T Consensus 144 ~~~~v~iGDs~~D~ 157 (205)
T PRK13582 144 GYRVIAAGDSYNDT 157 (205)
T ss_pred CCeEEEEeCCHHHH
Confidence 35789999999993
No 113
>PTZ00174 phosphomannomutase; Provisional
Probab=20.29 E-value=52 Score=23.25 Aligned_cols=18 Identities=22% Similarity=0.108 Sum_probs=14.3
Q ss_pred CCeEEEcCC----ccccCCCcc
Q 038057 28 APALYVLGD----SLLDSGNNN 45 (80)
Q Consensus 28 ~~~if~FGD----SlsDtGN~~ 45 (80)
...+++||| +.+|..-..
T Consensus 200 ~~eviafGD~~~~~~NDieMl~ 221 (247)
T PTZ00174 200 FKEIHFFGDKTFEGGNDYEIYN 221 (247)
T ss_pred hhhEEEEcccCCCCCCcHhhhh
Confidence 579999999 788866553
No 114
>PF11153 DUF2931: Protein of unknown function (DUF2931); InterPro: IPR021326 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently, there is no known function.
Probab=20.11 E-value=86 Score=21.96 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=8.1
Q ss_pred cchhhHHHHHHHHHHHHhh
Q 038057 2 ISKYSITSSFIFLLFITSS 20 (80)
Q Consensus 2 ~~~~~l~~~l~~l~~~~~~ 20 (80)
|||..+++ +++++..|+.
T Consensus 1 mk~i~~l~-l~lll~~C~~ 18 (216)
T PF11153_consen 1 MKKILLLL-LLLLLTGCST 18 (216)
T ss_pred ChHHHHHH-HHHHHHhhcC
Confidence 66665443 3333333333
No 115
>PF03996 Hema_esterase: Hemagglutinin esterase; InterPro: IPR007142 Haemagglutinin-esterase fusion glycoprotein (HEF) is a multi-functional protein embedded in the viral envelope of several viruses, including influenza C virus, coronaviruses and toroviruses [, ]. HEF is required for infectivity, and functions to recognise the host cell surface receptor, to fuse the viral and host cell membranes, and to destroy the receptor upon host cell infection. The haemagglutinin region of HEF is responsible for receptor recognition and membrane fusion, and bears a strong resemblance to the sialic acid-binding haemagglutinin found in influenza A and B viruses, except that it binds 9-O-acetylsialic acid. The esterase region of HEF is responsible for the destruction of the receptor, an action that is carried out by neuraminidase in influenza A and B viruses. The esterase domain is similar in structure to Streptomyces scabies esterase, and to acetylhydrolase, thioesterase I and rhamnogalacturonan acetylesterase. The haemagglutinin-esterase glycoprotein HEF must be cleaved by the host's trypsin-like proteases to produce two peptides (HEF1 and HEF2) in order for the virus to be infectious. Once HEF is cleaved, the newly exposed N-terminal of the HEF2 peptide then acts to fuse the viral envelope to the cellular membrane of the host cell, which allows the virus to infect the host cell. The haemagglutinin-esterase glycoprotein is a trimer, where each monomer is composed of three domains: an elongated stem active in membrane fusion, an esterase domain, and a receptor-binding domain, where the stem and receptor-binding domains together resemble influenza A virus haemagglutinin. Two of these domains are composed of non-contiguous sequence: the receptor-binding haemagglutinin domain is inserted into a surface loop of the esterase domain, and the esterase domain is inserted into a surface loop of the haemagglutinin stem. This entry represents the core of the haemagglutinin-esterase glycoprotein, including the haemagglutinin receptor-binding domain and the esterase domain. More information about haemagglutinin proteins can be found at Protein of the Month: Bird Flu, Haemagglutinin [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0046789 host cell surface receptor binding, 0019064 viral envelope fusion with host membrane, 0019031 viral envelope; PDB: 3CL5_A 3CL4_A 3I26_D 3I27_C 1FLC_E 3I1L_C 3I1K_C.
Probab=20.07 E-value=52 Score=24.79 Aligned_cols=17 Identities=29% Similarity=0.552 Sum_probs=13.0
Q ss_pred CeEEEcCCccccC---CCcc
Q 038057 29 PALYVLGDSLLDS---GNNN 45 (80)
Q Consensus 29 ~~if~FGDSlsDt---GN~~ 45 (80)
..-+-||||-+|. .|.+
T Consensus 45 ~dW~lFGDSRSDC~~~~N~~ 64 (258)
T PF03996_consen 45 SDWFLFGDSRSDCNHINNSQ 64 (258)
T ss_dssp SSEEEEESGGG-TGGGTSTT
T ss_pred cceeEecCccccccccCCCC
Confidence 4568899999999 8764
No 116
>PF06291 Lambda_Bor: Bor protein; InterPro: IPR010438 This family consists of several Bacteriophage lambda Bor and Escherichia coli Iss proteins. Expression of bor significantly increases the survival of the E. coli host cell in animal serum. This property is a well known bacterial virulence determinant indeed, bor and its adjacent sequences are highly homologous to the iss serum resistance locus of the plasmid ColV2-K94, which confers virulence in animals. It has been suggested that lysogeny may generally have a role in bacterial survival in animal hosts, and perhaps in pathogenesis [].
Probab=20.01 E-value=63 Score=20.78 Aligned_cols=11 Identities=9% Similarity=0.320 Sum_probs=7.0
Q ss_pred cchhhHHHHHH
Q 038057 2 ISKYSITSSFI 12 (80)
Q Consensus 2 ~~~~~l~~~l~ 12 (80)
|||..+...+.
T Consensus 1 mKk~ll~~~la 11 (97)
T PF06291_consen 1 MKKLLLAAALA 11 (97)
T ss_pred CcHHHHHHHHH
Confidence 78877655443
Done!