BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038058
(170 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3U1X|A Chain A, Crystal Structure Of A Putative Glycosyl Hydrolase
(Bdi_1869) From Parabacteroides Distasonis Atcc 8503 At
1.70 A Resolution
pdb|3U1X|B Chain B, Crystal Structure Of A Putative Glycosyl Hydrolase
(Bdi_1869) From Parabacteroides Distasonis Atcc 8503 At
1.70 A Resolution
Length = 236
Score = 32.7 bits (73), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 100 AYTLVFNSSEYKGTLNIMGADLMPEKTRDLSVVG-GTGDFFMARGIATFTTDAVEGIKY- 157
YTL+FN ++ G G D+ + D +VG G G +A +TD V Y
Sbjct: 20 GYTLLFNGKDFTGWKXFNGGDVKGWQVEDGVIVGYGNGGDVIADTTIKVSTDIVTVKNYH 79
Query: 158 -FRLKMDIKL 166
F++K D K+
Sbjct: 80 NFQIKWDWKI 89
>pdb|1SXW|A Chain A, 1.05 A Crystal Structure Of D30a Mutant Of Nitrophorin 4
From Rhodnius Prolixus Complexed With Nitric Oxide
Length = 184
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 26 VLYYHDNLLLDPDDVANSTSAKVTSGTKLGNYEFGMVVVFNDPVTKDQSFQSPE 79
V Y D L L+PDDV A + +GT G + + DP T+D + E
Sbjct: 22 VWYVTDYLALEPDDVPKRYCAALAAGTASG--KLKEALYHYDPKTQDTFYDVSE 73
>pdb|3FLL|A Chain A, Crystal Structure Of E55q Mutant Of Nitrophorin 4
Length = 184
Score = 26.9 bits (58), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 26 VLYYHDNLLLDPDDVANSTSAKVTSGTKLGNYEFGMVVVFNDPVTKDQSFQSPE 79
V Y D L L+PDDV A + +GT G + + DP T+D + E
Sbjct: 22 VWYVTDYLDLEPDDVPKRYCAALAAGTASG--KLKQALYHYDPKTQDTFYDVSE 73
>pdb|2G6T|A Chain A, Crystal Structure Of An Uncharacterized Protein From
Clostridium Acetobutylicum
pdb|2G6T|B Chain B, Crystal Structure Of An Uncharacterized Protein From
Clostridium Acetobutylicum
Length = 306
Score = 26.9 bits (58), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 34 LLDPDDVANSTSAK-VTSGTKLGNYEFGMVVVFNDPVTKDQSFQS-----PEAATAQGFY 87
L+ D A K V T++ NYEF +++FN D ++ PE G +
Sbjct: 34 LISKDKYAKYIDGKEVIDKTEISNYEFDYIIIFNKERYSDIKNEALELGIPERKILNGKF 93
Query: 88 FY 89
F+
Sbjct: 94 FF 95
>pdb|1U17|A Chain A, 1.7 A Crystal Structure Of H60c Mutant Of Nitrophorin I.
Heme Complexed With Two Molecules Imidazole
pdb|1U17|B Chain B, 1.7 A Crystal Structure Of H60c Mutant Of Nitrophorin I.
Heme Complexed With Two Molecules Imidazole
pdb|1U18|A Chain A, 1.96 A Crystal Structure Of H60c Mutant Of Nitrophorin
Complexed With Histamine
pdb|1U18|B Chain B, 1.96 A Crystal Structure Of H60c Mutant Of Nitrophorin
Complexed With Histamine
Length = 185
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 26 VLYYHDNLLLDPDDVANSTSAKVTSGTKLGNYEFGMVVVFNDPVTKDQSFQSPE 79
V Y D L L+PDDV A + +GT G + + DP T+D + E
Sbjct: 23 VWYVTDYLDLEPDDVPKRYCAALAAGTASGKLKEALYCY--DPKTQDTFYDVSE 74
>pdb|1SXU|A Chain A, 1.4 A Crystal Structure Of D30n Mutant Of Nitrophorin 4
From Rhodnius Prolixus Complexed With Imidazole
pdb|1SXY|A Chain A, 1.07 A Crystal Structure Of D30n Mutant Of Nitrophorin 4
From Rhodnius Prolixus
pdb|1SY3|A Chain A, 1.00 A Crystal Structure Of D30n Mutant Of Nitrophorin 4
From Rhodnius Prolixus Complexed With Nitric Oxide
Length = 184
Score = 26.6 bits (57), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 26 VLYYHDNLLLDPDDVANSTSAKVTSGTKLGNYEFGMVVVFNDPVTKDQSFQSPE 79
V Y D L L+PDDV A + +GT G + + DP T+D + E
Sbjct: 22 VWYVTDYLNLEPDDVPKRYCAALAAGTASG--KLKEALYHYDPKTQDTFYDVSE 73
>pdb|3TGA|A Chain A, Crystal Structure Of L130r Mutant Of Nitrophorin 4 From
Rhodnius Prolixus At Ph 7.4
pdb|3TGB|A Chain A, Crystal Structure Of L130r Mutant Of Nitrophorin 4 From
Rhodnius Prolixus Complexed With Imidazole At Ph 7.4
pdb|3TGC|A Chain A, Crystal Structure Of L130r Mutant Of Nitrophorin 4 From
Rhodnius Prolixus Complexed With Nitrite At Ph 7.4
Length = 184
Score = 26.6 bits (57), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 26 VLYYHDNLLLDPDDVANSTSAKVTSGTKLGNYEFGMVVVFNDPVTKDQSFQSPE 79
V Y D L L+PDDV A + +GT G + + DP T+D + E
Sbjct: 22 VWYVTDYLDLEPDDVPKRYCAALAAGTASG--KLKEALYHYDPKTQDTFYDVSE 73
>pdb|1SXX|A Chain A, 1.0 A Crystal Structure Of D129aL130A MUTANT OF
Nitrophorin 4 Complexed With Nitric Oxide
pdb|1SY2|A Chain A, 1.0 A Crystal Structure Of D129aL130A MUTANT OF
Nitrophorin 4
Length = 184
Score = 26.6 bits (57), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 26 VLYYHDNLLLDPDDVANSTSAKVTSGTKLGNYEFGMVVVFNDPVTKDQSFQSPE 79
V Y D L L+PDDV A + +GT G + + DP T+D + E
Sbjct: 22 VWYVTDYLDLEPDDVPKRYCAALAAGTASG--KLKEALYHYDPKTQDTFYDVSE 73
>pdb|1NP4|A Chain A, Crystal Structure Of Nitrophorin 4 From Rhodnius
Prolixus
pdb|1EQD|A Chain A, Crystal Structure Of Nitrophorin 4 Complexed With Cn
pdb|1ERX|A Chain A, Crystal Structure Of Nitrophorin 4 Complexed With No
pdb|1D3S|A Chain A, 1.4 A Crystal Structure Of Nitrophorin 4 From Rhodnius
Prolixis At Ph5.6.
pdb|1D2U|A Chain A, 1.15 A Crystal Structure Of Nitrophorin 4 From Rhodnius
Prolixus
pdb|1IKE|A Chain A, Crystal Structure Of Nitrophorin 4 From Rhodnius
Prolixus Complexed With Histamine At 1.5 A Resolution
pdb|1IKJ|A Chain A, 1.27 A Crystal Structure Of Nitrophorin 4 From Rhodnius
Prolixus Complexed With Imidazole
pdb|1KOI|A Chain A, Crystal Structure Of Nitrophorin 4 From Rhodnius
Prolixus Complexed With Nitric Oxide At 1.08 A
Resolution
pdb|1ML7|A Chain A, Crystal Structure Of Nitrophorin 4 Complexed With 4-
Iodopyrazole
pdb|1U0X|A Chain A, Crystal Structure Of Nitrophorin 4 Under Pressure Of
Xenon (200 Psi)
pdb|1X8N|A Chain A, 1.08 A Crystal Structure Of Nitrophorin 4 From Rhodnius
Prolixus Complexed With Nitric Oxide At Ph 7.4
pdb|1X8O|A Chain A, 1.01 A Crystal Structure Of Nitrophorin 4 From Rhodnius
Prolixus Complexed With Nitric Oxide At Ph 5.6
pdb|1X8P|A Chain A, 0.85 A Crystal Structure Of Nitrophorin 4 From Rhodnius
Prolixus Complexed With Ammonia At Ph 7.4
pdb|1X8Q|A Chain A, 0.85 A Crystal Structure Of Nitrophorin 4 From Rhodnius
Prolixus In Complex With Water At Ph 5.6
pdb|1YWA|A Chain A, 0.9 A Structure Of Np4 From Rhodnius Prolixus Complexed
With Co At Ph 5.6
pdb|1YWB|A Chain A, 0.9 A Structure Of Np4 From Rhodnius Prolixus Complexed
With No At Ph 5.6
pdb|1YWC|A Chain A, Structure Of The Ferrous Co Complex Of Np4 From Rhodnius
Prolixus At Ph 7.0
pdb|1YWD|A Chain A, 1.08 A Structure Of Ferrous Np4 (Aquo Complex)
pdb|2AT5|X Chain X, 1.22 A Crystal Structure Of Nitrophorin 4 From Rhodnius
Prolixus Containing Fe(Iii) Deuteroporphyrin Ix
Complexed With Nitric Oxide At Ph 5.6
pdb|2AT6|X Chain X, 1.22 A Crystal Structure Of Nitrophorin 4 From Rhodnius
Prolixus Containing Fe(Iii) Deuteroporphyrin Ix
Complexed With Water At Ph 5.6
pdb|2AT8|X Chain X, 0.96 A Crystal Structure Of Nitrophorin 4 From Rhodnius
Prolixus Containing Fe(Iii) 2,4 Dimethyl
Deuteroporphyrin Ix Complexed With Nitric Oxide At Ph
5.6
pdb|2OFM|X Chain X, 1.11 A Crystal Structure Of Apo Nitrophorin 4 From
Rhodnius Prolixus
pdb|3C77|X Chain X, 1.08 A Crystal Structure Of Nitrophorin 4 From Rhodnius
Prolixus Containing Fe(Iii) Deuteroporphyrin Ix
Complexed With Ammonia At Ph 7.5
pdb|3C78|X Chain X, 0.98 A Crystal Structure Of Nitrophorin 4 From Rhodnius
Prolixus Containing Fe(Iii) 2,4 Dimethyl
Deuteroporphyrin Ix Complexed With Ammonia At Ph 7.5
pdb|3MVF|A Chain A, Crystal Structure Of Nitrophorin 4 From Rhodnius
Prolixus Complexed With Nitrite At Ph 7.4
Length = 184
Score = 26.6 bits (57), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 26 VLYYHDNLLLDPDDVANSTSAKVTSGTKLGNYEFGMVVVFNDPVTKDQSFQSPE 79
V Y D L L+PDDV A + +GT G + + DP T+D + E
Sbjct: 22 VWYVTDYLDLEPDDVPKRYCAALAAGTASG--KLKEALYHYDPKTQDTFYDVSE 73
>pdb|1SY0|A Chain A, 1.15 A Crystal Structure Of T121v Mutant Of Nitrophorin
4 From Rhodnius Prolixus
pdb|1SY1|A Chain A, 1.0 A Crystal Structure Of T121v Mutant Of Nitrophorin 4
Complexed With Nitric Oxide
Length = 184
Score = 26.6 bits (57), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 26 VLYYHDNLLLDPDDVANSTSAKVTSGTKLGNYEFGMVVVFNDPVTKDQSFQSPE 79
V Y D L L+PDDV A + +GT G + + DP T+D + E
Sbjct: 22 VWYVTDYLDLEPDDVPKRYCAALAAGTASG--KLKEALYHYDPKTQDTFYDVSE 73
>pdb|2AT0|X Chain X, 1.00 A Crystal Structure Of L133v Mutant Of Nitrophorin
4 From Rhodnius Prolixus Complexed With Nitric Oxide At
Ph 5.6
pdb|3C76|X Chain X, 1.07 A Crystal Structure Of L133v Mutant Of Nitrophorin
4 From Rhodnius Prolixus Complexed With Ammonia At Ph
7.5
Length = 184
Score = 26.6 bits (57), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 26 VLYYHDNLLLDPDDVANSTSAKVTSGTKLGNYEFGMVVVFNDPVTKDQSFQSPE 79
V Y D L L+PDDV A + +GT G + + DP T+D + E
Sbjct: 22 VWYVTDYLDLEPDDVPKRYCAALAAGTASG--KLKEALYHYDPKTQDTFYDVSE 73
>pdb|2AT3|X Chain X, 1.00 A Crystal Structure Of L123vL133V MUTANT OF
Nitrophorin 4 From Rhodnius Prolixus Complexed With
Imidazole At Ph 5.6
Length = 184
Score = 26.6 bits (57), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 26 VLYYHDNLLLDPDDVANSTSAKVTSGTKLGNYEFGMVVVFNDPVTKDQSFQSPE 79
V Y D L L+PDDV A + +GT G + + DP T+D + E
Sbjct: 22 VWYVTDYLDLEPDDVPKRYCAALAAGTASG--KLKEALYHYDPKTQDTFYDVSE 73
>pdb|1NP1|A Chain A, Crystal Structure Of The Complex Of Nitrophorin 1 From
Rhodnius Prolixus With Histamine
pdb|1NP1|B Chain B, Crystal Structure Of The Complex Of Nitrophorin 1 From
Rhodnius Prolixus With Histamine
pdb|2NP1|A Chain A, Crystal Structure Of Nitrophorin 1 From Rhodnius
Prolixus
pdb|2NP1|B Chain B, Crystal Structure Of Nitrophorin 1 From Rhodnius
Prolixus
pdb|3NP1|A Chain A, Crystal Structure Of The Complex Of Nitrophorin 1 From
Rhodnius Prolixus With Cyanide
pdb|3NP1|B Chain B, Crystal Structure Of The Complex Of Nitrophorin 1 From
Rhodnius Prolixus With Cyanide
pdb|4NP1|A Chain A, Nitrophorin 1 Complex With Nitric Oxide
pdb|4NP1|B Chain B, Nitrophorin 1 Complex With Nitric Oxide
Length = 184
Score = 26.2 bits (56), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 26 VLYYHDNLLLDPDDVANSTSAKVTSGTKLGNYEFGMVVVFNDPVTKDQSFQSPE 79
V Y D L L+PDDV A + +GT G + + DP T+D + E
Sbjct: 22 VWYVTDYLDLEPDDVPKRYCAALAAGTASG--KLKEALYHYDPKTQDTFYDVSE 73
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,954,068
Number of Sequences: 62578
Number of extensions: 196642
Number of successful extensions: 363
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 362
Number of HSP's gapped (non-prelim): 15
length of query: 170
length of database: 14,973,337
effective HSP length: 92
effective length of query: 78
effective length of database: 9,216,161
effective search space: 718860558
effective search space used: 718860558
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)