BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038058
(170 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P13240|DR206_PEA Disease resistance response protein 206 OS=Pisum sativum GN=PI206
PE=2 SV=2
Length = 184
Score = 159 bits (401), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 84/176 (47%), Positives = 111/176 (63%), Gaps = 10/176 (5%)
Query: 1 MLVSESQSVSATRKISKYQKPRKQFVLYYHDNLLLDPDDVANSTSAKV-----TSGTKLG 55
ML + S ++ RK KP K V Y+HD +L + + AN+TSA V S TKL
Sbjct: 13 MLFALSSAIPNKRKP---YKPCKNLVFYFHD-ILYNGKNAANATSAIVAAPEGVSLTKLA 68
Query: 56 -NYEFGMVVVFNDPVTKDQSFQSPEAATAQGFYFYNMKNDYSAWFAYTLVFNSSEYKGTL 114
FG ++VF+DP+T S S + AQGFY Y+ KN Y++W ++T V NS+ ++GT+
Sbjct: 69 PQSHFGNIIVFDDPITLSHSLSSKQVGRAQGFYIYDTKNTYTSWLSFTFVLNSTHHQGTI 128
Query: 115 NIMGADLMPEKTRDLSVVGGTGDFFMARGIATFTTDAVEGIKYFRLKMDIKLYECY 170
GAD + KTRD+SV GGTGDFFM RGIAT TTDA EG YFRL + IK +EC+
Sbjct: 129 TFAGADPIVAKTRDISVTGGTGDFFMHRGIATITTDAFEGEAYFRLGVYIKFFECW 184
>sp|Q831A4|ATPG_ENTFA ATP synthase gamma chain OS=Enterococcus faecalis (strain ATCC
700802 / V583) GN=atpG PE=3 SV=1
Length = 302
Score = 33.9 bits (76), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 105 FNSSEYKGTLNIMGADLMPEKTRDLSVVGGTG-DFFMARGI 144
+NSS K T++++ D K L +GGTG DFF ARGI
Sbjct: 105 YNSSILKQTMSMIQEDHDSNKEYALIAIGGTGADFFKARGI 145
>sp|Q18CF6|RS10_CLOD6 30S ribosomal protein S10 OS=Clostridium difficile (strain 630)
GN=rpsJ PE=3 SV=1
Length = 103
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 2 LVSESQSVSATRKISKYQKPRKQFVLYYHDNLLLDPDDVANSTSAKVTSGTKL 54
L +E Q V+ R + KY+ R+QF + H L+ D+AN T V S +L
Sbjct: 43 LPTEKQVVTILRAVHKYKYSREQFEIRTHKRLI----DIANPTPKTVDSLMRL 91
>sp|P85482|DIRLP_PINHA Dirigent-like protein (Fragment) OS=Pinus halepensis PE=1 SV=1
Length = 15
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 13/15 (86%), Positives = 14/15 (93%)
Query: 128 DLSVVGGTGDFFMAR 142
D+SVVGGTGDF MAR
Sbjct: 1 DISVVGGTGDFLMAR 15
>sp|P43452|ATPG_ENTHA ATP synthase gamma chain OS=Enterococcus hirae (strain ATCC 9790 /
DSM 20160 / JCM 8729 / LMG 6399 / NBRC 3181 / NCIMB 6459
/ NCDO 1258) GN=atpG PE=3 SV=1
Length = 300
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 105 FNSSEYKGTLNIMGADLMPEKTRDLSVVGGTG-DFFMARGI 144
+NSS K T++I+ D + +GGTG DFF ARGI
Sbjct: 103 YNSSILKQTMSILEEDHKSPDDYVMIAIGGTGADFFKARGI 143
>sp|O49624|FB242_ARATH Putative F-box protein At4g22180 OS=Arabidopsis thaliana
GN=At4g22180 PE=4 SV=3
Length = 402
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 98 WFAYTLVFNSSEYKGTLNIMGADL-MPEKTRDLSVVGGTG 136
WF TL +N EY + I+ + EKT+D V+ G G
Sbjct: 153 WFHSTLHYNGKEYHKRIRILSTVFWIDEKTKDYVVIWGLG 192
>sp|Q9LRM5|PLY9_ARATH Probable pectate lyase 9 OS=Arabidopsis thaliana GN=At3g24230 PE=2
SV=1
Length = 452
Score = 30.0 bits (66), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 12/77 (15%)
Query: 39 DVANSTSAKVTSGTKLGNYEFGMVVVFNDPVTKDQSFQSPEA------------ATAQGF 86
DV N ++A S +++ M++ ND T+D+ Q A +
Sbjct: 278 DVVNGSTAITISNNHFTHHDEVMLLGHNDSYTRDKMMQVTVAYNHFGEGLIQRMPRCRHG 337
Query: 87 YFYNMKNDYSAWFAYTL 103
YF+ + NDY+ W Y +
Sbjct: 338 YFHVVNNDYTHWKMYAI 354
>sp|Q6NYP0|TM208_DANRE Transmembrane protein 208 OS=Danio rerio GN=tmem208 PE=2 SV=1
Length = 175
Score = 30.0 bits (66), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 93 NDYSAWFAYTLVFNSSEYKGTLNIMGADLMPEKTRDLSVVGGTGDFFMARGIATFTTDAV 152
N S W ++L+F + Y G+ M A P D S++ G D M +G+A D +
Sbjct: 47 NSSSFWTWFSLMFAVAVYVGSYRSMSAMAKPAFAEDGSLLDGGIDLNMEQGMAEHLKDVI 106
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,110,083
Number of Sequences: 539616
Number of extensions: 2339130
Number of successful extensions: 4622
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 4613
Number of HSP's gapped (non-prelim): 11
length of query: 170
length of database: 191,569,459
effective HSP length: 109
effective length of query: 61
effective length of database: 132,751,315
effective search space: 8097830215
effective search space used: 8097830215
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)