Query 038058
Match_columns 170
No_of_seqs 120 out of 528
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 07:08:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038058.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038058hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03018 Dirigent: Dirigent-li 100.0 1.8E-49 3.8E-54 310.2 18.7 139 21-164 1-142 (144)
2 PF06351 Allene_ox_cyc: Allene 98.1 0.00018 3.9E-09 57.4 14.4 121 18-153 3-128 (176)
3 PLN02343 allene oxide cyclase 97.7 0.0021 4.5E-08 53.3 14.0 91 57-153 85-179 (229)
4 PF11528 DUF3224: Protein of u 87.6 8.3 0.00018 29.9 9.5 75 77-151 40-120 (134)
5 PF06347 SH3_4: Bacterial SH3 23.7 53 0.0011 20.7 1.4 17 68-84 6-22 (55)
6 PF08239 SH3_3: Bacterial SH3 23.3 63 0.0014 19.9 1.7 16 68-83 4-19 (55)
7 COG3040 Blc Bacterial lipocali 16.4 3.7E+02 0.0081 21.9 5.1 64 60-135 67-130 (174)
8 PF07289 DUF1448: Protein of u 13.9 4.9E+02 0.011 23.5 5.7 41 57-106 66-106 (339)
9 PF11849 DUF3369: Domain of un 13.2 1.4E+02 0.0029 23.5 1.8 28 118-145 65-92 (174)
10 PF15240 Pro-rich: Proline-ric 12.6 41 0.00089 27.5 -1.3 10 1-10 1-10 (179)
No 1
>PF03018 Dirigent: Dirigent-like protein; InterPro: IPR004265 This family contains a number of proteins which are induced during disease response in plants.
Probab=100.00 E-value=1.8e-49 Score=310.20 Aligned_cols=139 Identities=37% Similarity=0.600 Sum_probs=126.4
Q ss_pred CeeeEEEEeeeeeecCCCCCCCcceEEeeeCCCCCCCCcccEEEEeeceecCCCCCCccceeeEEEEEEecCCCceeEEE
Q 038058 21 PRKQFVLYYHDNLLLDPDDVANSTSAKVTSGTKLGNYEFGMVVVFNDPVTKDQSFQSPEAATAQGFYFYNMKNDYSAWFA 100 (170)
Q Consensus 21 k~~~l~fY~Hd~~~~~g~~~~n~t~v~v~~p~~~~~~~FG~~~V~Dd~lt~gp~~~Sk~VGRaQG~~~~~~~~~~~~~~~ 100 (170)
|++||+||||| +. ++||+|++.|+.|+.+...+||+++|+||||||||+++||+||||||+|+.+++++.+++++
T Consensus 1 ~~t~l~fY~H~-~~----~g~n~t~~~v~~~~~~~~~~FG~~~V~D~~lt~gp~~~S~~VGraqG~~~~~s~~~~~~~~~ 75 (144)
T PF03018_consen 1 KETHLHFYMHD-IV----SGPNPTAVVVAEPPGPSSSGFGTVVVFDDPLTEGPDPDSKLVGRAQGFYVSASLDGSSWFMS 75 (144)
T ss_pred CceEEEEEeee-cC----CCCCCCEEEeccCCCCCCCCCcEEEEEeeceEcCCCCCCccceEEEEEEEeecccCccEEEE
Confidence 68999999999 67 45899999999887655559999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCcCC-eEEEEeccCCCCCceeeEEEeccccccCceeEEEEEEe-eec-CcEEEEEEEEE
Q 038058 101 YTLVFNSSEYKG-TLNIMGADLMPEKTRDLSVVGGTGDFFMARGIATFTTD-AVE-GIKYFRLKMDI 164 (170)
Q Consensus 101 ~~~vF~~g~~~G-tL~v~G~~~~~~~~~E~aVVGGTG~Fr~ArG~a~~~t~-~~~-g~~~~~l~i~v 164 (170)
++++|++++||| ||+++|+++..+++||||||||||+||||||||+++++ ... ++.++||+|++
T Consensus 76 ~~~vF~~g~~~GStl~v~G~~~~~~~~~e~~VVGGTG~Fr~ArG~~~~~~~~~~~~~~~v~e~~v~~ 142 (144)
T PF03018_consen 76 FTLVFEDGEYNGSTLSVMGRDPFFEPVRELAVVGGTGEFRMARGYAKLRTVFDSSGGNAVLELNVHL 142 (144)
T ss_pred EEEEEEecccCCCeEEEeCCCcccCcccEEeEecCCCeEcceEEEEEEEEEeecCCCCEEEEEEEEE
Confidence 999999999999 99999999988999999999999999999999999999 444 46666666554
No 2
>PF06351 Allene_ox_cyc: Allene oxide cyclase; InterPro: IPR009410 This family consists of several plant specific allene oxide cyclase proteins (5.3.99.6 from EC). The allene oxide cyclase (AOC)-catalysed step in jasmonate (JA) biosynthesis is important in the wound response of tomato [].; GO: 0016853 isomerase activity, 0009507 chloroplast; PDB: 2GIN_A 2DIO_B 2BRJ_B 2Q4I_B 1Z8K_A 1ZVC_A.
Probab=98.12 E-value=0.00018 Score=57.45 Aligned_cols=121 Identities=16% Similarity=0.192 Sum_probs=75.2
Q ss_pred CCCCeeeEEEEeeeeeecCCCCCCCcce-EEeeeCCCCCCCCcccEEEEeeceecCCCCCCccceeeEEEEEEecC----
Q 038058 18 YQKPRKQFVLYYHDNLLLDPDDVANSTS-AKVTSGTKLGNYEFGMVVVFNDPVTKDQSFQSPEAATAQGFYFYNMK---- 92 (170)
Q Consensus 18 ~~~k~~~l~fY~Hd~~~~~g~~~~n~t~-v~v~~p~~~~~~~FG~~~V~Dd~lt~gp~~~Sk~VGRaQG~~~~~~~---- 92 (170)
.+.|+..|+.|=-. ... +++.+ ++...- +....|+.+-|.|+|.+|.. -+-+|--+|+-+.-..
T Consensus 3 ~p~kvqel~vyeiN-Erd-----R~SPa~L~ls~k---~~nslGDlvpFsNklY~g~l--~~rlGitaG~Cvliq~~p~k 71 (176)
T PF06351_consen 3 RPTKVQELSVYEIN-ERD-----RGSPAYLRLSQK---SVNSLGDLVPFSNKLYDGDL--QKRLGITAGICVLIQHVPEK 71 (176)
T ss_dssp -----EEEEEEEE---S------S--S--B--SSS---SSS-TT-EEEEEEEEEETTS--S-EEEEEEEEEEEEEEECCC
T ss_pred CccceEEEEEEEEc-ccc-----cCCCcEEEcccc---cchhcccccccccccccchh--hhhhcccceEEEEEEecccc
Confidence 45677788888443 231 22222 222221 33568999999999999987 5889999999766432
Q ss_pred CCceeEEEEEEEEecCCcCCeEEEEeccCCCCCceeeEEEeccccccCceeEEEEEEeeec
Q 038058 93 NDYSAWFAYTLVFNSSEYKGTLNIMGADLMPEKTRDLSVVGGTGDFFMARGIATFTTDAVE 153 (170)
Q Consensus 93 ~~~~~~~~~~~vF~~g~~~GtL~v~G~~~~~~~~~E~aVVGGTG~Fr~ArG~a~~~t~~~~ 153 (170)
.+...=-.+++-|.+ -|.|+++|..... ++.-++|.||||-|+.|+|-++++.+.+.
T Consensus 72 ~GdryEaiySfyfGd---yGhISvqGpy~t~-eDtyLAVTGGtGiF~g~~GqVkL~qivfP 128 (176)
T PF06351_consen 72 KGDRYEAIYSFYFGD---YGHISVQGPYLTY-EDTYLAVTGGTGIFEGVYGQVKLHQIVFP 128 (176)
T ss_dssp TEEEEEEEEEEE-GG---GEEEEEEEEEETT-S-EEEEEEEEEETTTT-EEEEEEEEEETT
T ss_pred CCceEEEEEEEEecc---cceEEEecccccc-cceeEEEeccCceeecceEEEEEEEeecc
Confidence 232333456677754 5799999997654 56789999999999999999999987655
No 3
>PLN02343 allene oxide cyclase
Probab=97.69 E-value=0.0021 Score=53.31 Aligned_cols=91 Identities=18% Similarity=0.247 Sum_probs=71.4
Q ss_pred CCcccEEEEeeceecCCCCCCccceeeEEEEEEecC----CCceeEEEEEEEEecCCcCCeEEEEeccCCCCCceeeEEE
Q 038058 57 YEFGMVVVFNDPVTKDQSFQSPEAATAQGFYFYNMK----NDYSAWFAYTLVFNSSEYKGTLNIMGADLMPEKTRDLSVV 132 (170)
Q Consensus 57 ~~FG~~~V~Dd~lt~gp~~~Sk~VGRaQG~~~~~~~----~~~~~~~~~~~vF~~g~~~GtL~v~G~~~~~~~~~E~aVV 132 (170)
...|+.+-|.|.|.+|.- -|-+|--.|+-+.-.. .+..+=-.+++-|.| -|.|+|+|..... ++.-++|.
T Consensus 85 ~sLGDlVPFsNKlY~g~L--~kRlGiTaG~Cvliq~~pek~gDryEa~ySfyfGD---yGHisvqGpylty-eDt~LaiT 158 (229)
T PLN02343 85 NALGDLVPFTNKLYTGDL--KKRLGITAGLCVLIQHVPEKKGDRYEAIYSFYFGD---YGHISVQGPYLTY-EDTYLAIT 158 (229)
T ss_pred ccccceeccccccccchh--hhhhcccceeEEEEEeccccCCceeEEEEEEEecC---cceeEEecccccc-ccceEEee
Confidence 568999999999999865 4789999998665533 233344567788864 5799999997654 45689999
Q ss_pred eccccccCceeEEEEEEeeec
Q 038058 133 GGTGDFFMARGIATFTTDAVE 153 (170)
Q Consensus 133 GGTG~Fr~ArG~a~~~t~~~~ 153 (170)
||+|-|+.|+|-++++.+.+.
T Consensus 159 GGsGiFega~GqvkL~qivfP 179 (229)
T PLN02343 159 GGSGIFEGAYGQVKLHQIVFP 179 (229)
T ss_pred cCcceeecceeEEEEeeeeee
Confidence 999999999999999876544
No 4
>PF11528 DUF3224: Protein of unknown function (DUF3224); InterPro: IPR021607 This bacterial family of proteins has no known function. ; PDB: 2OOJ_B 2Q03_B.
Probab=87.64 E-value=8.3 Score=29.90 Aligned_cols=75 Identities=21% Similarity=0.278 Sum_probs=46.3
Q ss_pred CccceeeEEEEEEecCC-CceeEEEEEEEE-ecCCcCCe--EEEEeccCCCCCceeeEEE--eccccccCceeEEEEEEe
Q 038058 77 SPEAATAQGFYFYNMKN-DYSAWFAYTLVF-NSSEYKGT--LNIMGADLMPEKTRDLSVV--GGTGDFFMARGIATFTTD 150 (170)
Q Consensus 77 Sk~VGRaQG~~~~~~~~-~~~~~~~~~~vF-~~g~~~Gt--L~v~G~~~~~~~~~E~aVV--GGTG~Fr~ArG~a~~~t~ 150 (170)
-.+.|++++-|+.+-.. +.+.+..+..+= +-+..+|| |+-.|.........+|-|| -|||++...+|-..++..
T Consensus 40 G~l~Gts~~~~L~~y~~~g~a~yva~E~~~Gtl~Gr~GsFvl~h~G~~~~g~~~~~~~VVPgSGTGeL~Gl~Gsg~~~~~ 119 (134)
T PF11528_consen 40 GDLEGTSTGEYLMAYDPDGSAGYVAFERFTGTLDGRSGSFVLQHSGTFDAGTASSSFTVVPGSGTGELAGLSGSGTITID 119 (134)
T ss_dssp TTEEEEEEEEEEEEEECTTEEEEEEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEE-TT--EETTTTEEEEEEEEEE
T ss_pred eEEEEEEEEEEEEEEcCCCcEEEEEEEEEEEEECCceEEEEEEEEEEEcCCcceEEEEEeCCCCchhhcCCEEEEEEEEC
Confidence 34778888888877543 444454443221 11245564 5555554433345689999 999999999999998876
Q ss_pred e
Q 038058 151 A 151 (170)
Q Consensus 151 ~ 151 (170)
.
T Consensus 120 ~ 120 (134)
T PF11528_consen 120 E 120 (134)
T ss_dssp T
T ss_pred C
Confidence 5
No 5
>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.
Probab=23.65 E-value=53 Score=20.65 Aligned_cols=17 Identities=24% Similarity=0.227 Sum_probs=14.4
Q ss_pred ceecCCCCCCccceeeE
Q 038058 68 PVTKDQSFQSPEAATAQ 84 (170)
Q Consensus 68 ~lt~gp~~~Sk~VGRaQ 84 (170)
+|+.+|+.+|+++.++.
T Consensus 6 ~lr~~P~~~~~vv~~l~ 22 (55)
T PF06347_consen 6 NLRSGPSSNSPVVARLE 22 (55)
T ss_pred EEEcCCCCCCCEEEEEC
Confidence 68899999999998763
No 6
>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.
Probab=23.31 E-value=63 Score=19.94 Aligned_cols=16 Identities=25% Similarity=0.198 Sum_probs=13.2
Q ss_pred ceecCCCCCCccceee
Q 038058 68 PVTKDQSFQSPEAATA 83 (170)
Q Consensus 68 ~lt~gp~~~Sk~VGRa 83 (170)
.|+.+|+.+|+.++.+
T Consensus 4 nvR~~p~~~s~~i~~l 19 (55)
T PF08239_consen 4 NVRSGPSTNSPVIGQL 19 (55)
T ss_dssp EEESSSSTTSTEEEEE
T ss_pred EEEeCCCCCChhhEEE
Confidence 4778899999998875
No 7
>COG3040 Blc Bacterial lipocalin [Cell envelope biogenesis, outer membrane]
Probab=16.37 E-value=3.7e+02 Score=21.93 Aligned_cols=64 Identities=19% Similarity=0.195 Sum_probs=38.5
Q ss_pred ccEEEEeeceecCCCCCCccceeeEEEEEEecCCCceeEEEEEEEEecCCcCCeEEEEeccCCCCCceeeEEEecc
Q 038058 60 GMVVVFNDPVTKDQSFQSPEAATAQGFYFYNMKNDYSAWFAYTLVFNSSEYKGTLNIMGADLMPEKTRDLSVVGGT 135 (170)
Q Consensus 60 G~~~V~Dd~lt~gp~~~Sk~VGRaQG~~~~~~~~~~~~~~~~~~vF~~g~~~GtL~v~G~~~~~~~~~E~aVVGGT 135 (170)
|.+.|+|.-.+.+.+.=+...|+|. +........+.++ |-. .|+|.--|+-.+ ++.-|+|||+-
T Consensus 67 ~~I~V~n~c~~~~~~~~~~ieGkA~---i~~~~~~a~LkVs----F~~-pF~g~Y~Vl~~d----~eYs~aiVgsP 130 (174)
T COG3040 67 GGISVINRCRTGDGGKWSQIEGKAK---IVDNATRAKLKVS----FFG-PFYGDYWVLALD----PEYSWAIVGSP 130 (174)
T ss_pred CceEEEeccccCCCCCceeecceEE---EecCccccEEEEE----ecC-CccccEEEEEEC----CCccEEEEeCC
Confidence 7799999988888876577778764 2222222233333 322 455644455443 35778998874
No 8
>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5). It consists of eukaryotic proteins of around 375 residues in length.
Probab=13.88 E-value=4.9e+02 Score=23.46 Aligned_cols=41 Identities=10% Similarity=0.289 Sum_probs=28.1
Q ss_pred CCcccEEEEeeceecCCCCCCccceeeEEEEEEecCCCceeEEEEEEEEe
Q 038058 57 YEFGMVVVFNDPVTKDQSFQSPEAATAQGFYFYNMKNDYSAWFAYTLVFN 106 (170)
Q Consensus 57 ~~FG~~~V~Dd~lt~gp~~~Sk~VGRaQG~~~~~~~~~~~~~~~~~~vF~ 106 (170)
.+|.++.=++-.. .+||+-|..|-+|+.+.-.+.. +.|.|+
T Consensus 66 IG~~~i~~i~~~~-----~~sklrg~teaL~i~~k~~~~r----fEFiFt 106 (339)
T PF07289_consen 66 IGYNCITNISTKT-----VNSKLRGNTEALYILAKFNNTR----FEFIFT 106 (339)
T ss_pred eeceeEEEEEEEE-----eeccccCceeEEEEeeecCCce----EEEEec
Confidence 4566665554432 2799999999999999765433 556665
No 9
>PF11849 DUF3369: Domain of unknown function (DUF3369); InterPro: IPR021800 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 170 amino acids in length.
Probab=13.23 E-value=1.4e+02 Score=23.50 Aligned_cols=28 Identities=21% Similarity=0.191 Sum_probs=19.2
Q ss_pred eccCCCCCceeeEEEeccccccCceeEE
Q 038058 118 GADLMPEKTRDLSVVGGTGDFFMARGIA 145 (170)
Q Consensus 118 G~~~~~~~~~E~aVVGGTG~Fr~ArG~a 145 (170)
+..+......++-|++|||+|.-.-|--
T Consensus 65 ~~~~~~~~~~~~~VlaatG~f~~~~~~~ 92 (174)
T PF11849_consen 65 SAFPDDSDDNEFRVLAATGRFESLIGQP 92 (174)
T ss_pred cccCCCCCCCCEEEEEEeccchhhcCCc
Confidence 4433334456899999999998665544
No 10
>PF15240 Pro-rich: Proline-rich
Probab=12.59 E-value=41 Score=27.54 Aligned_cols=10 Identities=20% Similarity=0.049 Sum_probs=7.8
Q ss_pred Ceeeeccccc
Q 038058 1 MLVSESQSVS 10 (170)
Q Consensus 1 ~~~~~~~~~~ 10 (170)
|||+||+++|
T Consensus 1 MLlVLLSvAL 10 (179)
T PF15240_consen 1 MLLVLLSVAL 10 (179)
T ss_pred ChhHHHHHHH
Confidence 8999987654
Done!