Query 038058
Match_columns 170
No_of_seqs 120 out of 528
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 11:55:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038058.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038058hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2brj_A Arabidopsis thaliana ge 98.8 1.8E-07 6.3E-12 74.4 14.2 93 57-155 43-139 (188)
2 4h6b_A Allene oxide cyclase; B 98.6 1.4E-06 5E-11 69.5 15.2 92 57-154 51-146 (195)
3 2ooj_A Hypothetical protein; s 73.1 27 0.00092 26.2 11.3 84 77-162 41-131 (141)
4 2q03_A Uncharacterized protein 66.1 39 0.0013 25.2 11.0 84 77-162 45-135 (138)
5 2krs_A Probable enterotoxin; a 15.5 62 0.0021 20.8 1.4 16 68-83 12-27 (74)
6 2kq8_A Cell WALL hydrolase; GF 15.4 50 0.0017 21.0 0.9 16 68-83 13-28 (70)
7 2kt8_A Probable surface protei 13.7 99 0.0034 20.0 2.1 16 68-83 14-29 (76)
8 2xdp_A Lysine-specific demethy 13.0 2.1E+02 0.0073 20.8 3.9 57 55-130 63-119 (123)
9 2qqr_A JMJC domain-containing 10.4 1.8E+02 0.0063 21.0 2.8 57 55-130 62-118 (118)
10 3h6j_A Neuraminidase, sialidas 9.8 1.9E+02 0.0066 24.1 3.0 51 96-148 374-435 (438)
No 1
>2brj_A Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone\:K13N2; cyclase, jasmonate synthesis, allene oxide cyclase, beta barrel; 1.5A {Arabidopsis thaliana} SCOP: b.159.1.1 PDB: 2dio_A* 2gin_A 1z8k_A* 2q4i_A 1zvc_A
Probab=98.79 E-value=1.8e-07 Score=74.35 Aligned_cols=93 Identities=19% Similarity=0.253 Sum_probs=73.3
Q ss_pred CCcccEEEEeeceecCCCCCCccceeeEEEEEEec----CCCceeEEEEEEEEecCCcCCeEEEEeccCCCCCceeeEEE
Q 038058 57 YEFGMVVVFNDPVTKDQSFQSPEAATAQGFYFYNM----KNDYSAWFAYTLVFNSSEYKGTLNIMGADLMPEKTRDLSVV 132 (170)
Q Consensus 57 ~~FG~~~V~Dd~lt~gp~~~Sk~VGRaQG~~~~~~----~~~~~~~~~~~~vF~~g~~~GtL~v~G~~~~~~~~~E~aVV 132 (170)
...|..+.|+++|.+|.. -+.||.-+|+-+... +.+..+--.+++.|.+ .|.|+++|..... ++..+||+
T Consensus 43 ~slGDlvpFsNkLydg~l--~~rvG~taG~Cv~~~~~p~~~gdryE~tyS~yfgd---~GhISvQGpy~t~-~Dt~LAIT 116 (188)
T 2brj_A 43 FGLGDLVPFTNKLYTGDL--KKRVGITAGLCVVIEHVPEKKGERFEATYSFYFGD---YGHLSVQGPYLTY-EDSFLAIT 116 (188)
T ss_dssp SCTTCEEEECCEEEETTS--SCEEEEEEEEEEEEEEEGGGTEEEEEEEEEEECGG---GEEEEEEEEEETT-BCEEEEEE
T ss_pred cCcccEEeeccccccccc--ceeccccceEEEEEEecCCCCCcEEEEEEEEEeCC---CceEEEecccccc-ccceeeEe
Confidence 457999999999997765 489999999977775 2233444566777754 4699999996332 46789999
Q ss_pred eccccccCceeEEEEEEeeecCc
Q 038058 133 GGTGDFFMARGIATFTTDAVEGI 155 (170)
Q Consensus 133 GGTG~Fr~ArG~a~~~t~~~~g~ 155 (170)
||||.|+.|+|.+++++..+...
T Consensus 117 GGTGif~gA~G~Vkl~~i~~P~k 139 (188)
T 2brj_A 117 GGAGIFEGAYGQVKLQQLVYPTK 139 (188)
T ss_dssp EEEETTTTCEEEEEEEEEETTTE
T ss_pred cCcceEcceEEEEEEEeeccCce
Confidence 99999999999999999877643
No 2
>4h6b_A Allene oxide cyclase; B-barrel, oxylipins, fatty acid, metabolites, allene-oxide C activity, isomerase; HET: 10X 10Y; 1.35A {Physcomitrella patens} PDB: 4h6c_A 4h6a_A* 4h69_A*
Probab=98.64 E-value=1.4e-06 Score=69.48 Aligned_cols=92 Identities=18% Similarity=0.244 Sum_probs=71.8
Q ss_pred CCcccEEEEeeceecCCCCCCccceeeEEEEEEec----CCCceeEEEEEEEEecCCcCCeEEEEeccCCCCCceeeEEE
Q 038058 57 YEFGMVVVFNDPVTKDQSFQSPEAATAQGFYFYNM----KNDYSAWFAYTLVFNSSEYKGTLNIMGADLMPEKTRDLSVV 132 (170)
Q Consensus 57 ~~FG~~~V~Dd~lt~gp~~~Sk~VGRaQG~~~~~~----~~~~~~~~~~~~vF~~g~~~GtL~v~G~~~~~~~~~E~aVV 132 (170)
...|+.+.|+++|.+|.. -+-||...|+-+... +.+...--.+++.|.+ -|+|+++|..-. -+..-+||+
T Consensus 51 ~slGDLvpFsnkLydg~l--~~RiGitaG~Cv~i~~~~~k~GdryEci~Tf~fGD---~GhIsvqGpy~t-~eDs~lAIT 124 (195)
T 4h6b_A 51 NSLGDLVPFSNKIYDGSL--KTRLGITAGLCTLISHSDQKNGDRYEALYSFYFGD---YGHISVQGPYIT-YEDSYLAIT 124 (195)
T ss_dssp CCTTCEEEECCEEEETTS--CCEEEEEEEEEEEEEEETTTTEEEEEEEEEEECGG---GCEEEEEEEEET-TBCEEEEEE
T ss_pred cccccccccccccccccc--cccccccccEEEEEeecCCCCCceEEEEEEEEecC---CceEEEecceec-cCceeEEEe
Confidence 468999999999999987 578999999976663 2222333455666754 589999999743 345679999
Q ss_pred eccccccCceeEEEEEEeeecC
Q 038058 133 GGTGDFFMARGIATFTTDAVEG 154 (170)
Q Consensus 133 GGTG~Fr~ArG~a~~~t~~~~g 154 (170)
||||.|+.|+|-+++..+.+.-
T Consensus 125 GGTGiF~Ga~GqVkl~qiv~pf 146 (195)
T 4h6b_A 125 GGSGIFAGCYGQAKLHQIIFPF 146 (195)
T ss_dssp EESGGGTTCEEEEEEEEEETTT
T ss_pred cCcceEcccEEEEEEeEeeeee
Confidence 9999999999999999876553
No 3
>2ooj_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 1.84A {Shewanella oneidensis} SCOP: b.159.2.1
Probab=73.12 E-value=27 Score=26.19 Aligned_cols=84 Identities=19% Similarity=0.291 Sum_probs=52.8
Q ss_pred CccceeeEEEEEEecCC--CceeEEEEEEEE-ecCCcCC--eEEEEeccCCCCCceeeEEEe--ccccccCceeEEEEEE
Q 038058 77 SPEAATAQGFYFYNMKN--DYSAWFAYTLVF-NSSEYKG--TLNIMGADLMPEKTRDLSVVG--GTGDFFMARGIATFTT 149 (170)
Q Consensus 77 Sk~VGRaQG~~~~~~~~--~~~~~~~~~~vF-~~g~~~G--tL~v~G~~~~~~~~~E~aVVG--GTG~Fr~ArG~a~~~t 149 (170)
-.+.|+.++-++.+-.+ +...++.+..+= +-+..+| .|+-.|..........+-||= |||++...+|-..+..
T Consensus 41 G~leGts~~~~L~~~~~~~G~A~yva~E~f~Gtl~Gr~GsFvlqh~Gt~~~g~~~~~~~VVPgSGTGeL~Gl~G~g~~~~ 120 (141)
T 2ooj_A 41 GELEARSQGEMLSAMTAVKGSAGYVAIEQVVGKLCGRQGSFVLQHFGIMTDGQNRLHLEVVPHSGAGELTGLYGTMAISI 120 (141)
T ss_dssp SSEEEEEEEEEEEEECSSTTCEEEEEEEEEEEEETTEEEEEEEEEEEEECC--CEEEEEECTTCCEETTTTEEEEEEEEE
T ss_pred eeEEEEEEEEEEEEEcCCCCcEEEEEEEEEEEEECCceEEEEEEEEEEEcCCcceEEEEEeCCCccccccCcEEEEEEEE
Confidence 34678888888888664 334444333211 1224456 455566655545567899998 9999999999999975
Q ss_pred eeecCcEEEEEEE
Q 038058 150 DAVEGIKYFRLKM 162 (170)
Q Consensus 150 ~~~~g~~~~~l~i 162 (170)
. +|...++|..
T Consensus 121 ~--~G~h~y~ldy 131 (141)
T 2ooj_A 121 E--NGQHFYEFSF 131 (141)
T ss_dssp E--TTEEEEEEEE
T ss_pred c--CCeEEEEEEE
Confidence 5 4644344443
No 4
>2q03_A Uncharacterized protein; YP_563039.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.80A {Shewanella denitrificans OS217} SCOP: b.159.2.1
Probab=66.09 E-value=39 Score=25.24 Aligned_cols=84 Identities=18% Similarity=0.329 Sum_probs=52.5
Q ss_pred CccceeeEEEEEEecC-CCceeEEEEEEEEe--cCCcCCe--EEEEeccCCCCCceeeEEEe--ccccccCceeEEEEEE
Q 038058 77 SPEAATAQGFYFYNMK-NDYSAWFAYTLVFN--SSEYKGT--LNIMGADLMPEKTRDLSVVG--GTGDFFMARGIATFTT 149 (170)
Q Consensus 77 Sk~VGRaQG~~~~~~~-~~~~~~~~~~~vF~--~g~~~Gt--L~v~G~~~~~~~~~E~aVVG--GTG~Fr~ArG~a~~~t 149 (170)
-.+.|++++-++.+-. ++...++.+. .|+ -+..+|| |+-.|..........+-||= |||++...+|-..+..
T Consensus 45 G~leGts~~~~L~~~~~~G~A~yva~E-~f~Gtl~Gr~GsFvlqh~Gt~~~g~~~~~~~VVPgSGTGeLaGl~G~g~~~~ 123 (138)
T 2q03_A 45 GVLQGHSEIRYLMSYQDNANATFVGFE-HFTGSLGDKKGSFILQHKGLFAAGVASSEFELVERSATGDFVHLVGKGHFVS 123 (138)
T ss_dssp SSEEEEEEEEEEEEEEETTEEEEEEEE-EEEEEETTEEEEEEEEEEEEEETTEEEEEEEECTTCCEETTTTEEEEEEEEE
T ss_pred eEEEEEEEEEEEEEEcCCCcEEEEEEE-EEEEEECCceEEEEEEEEEEEcCCcceEEEEEeCCCccccccCcEEEEEEEE
Confidence 3477888888877755 3434444332 222 2244564 55556554444457899998 9999999999999964
Q ss_pred eeecCcEEEEEEE
Q 038058 150 DAVEGIKYFRLKM 162 (170)
Q Consensus 150 ~~~~g~~~~~l~i 162 (170)
. .+|...+++.+
T Consensus 124 ~-~~G~h~Y~~~y 135 (138)
T 2q03_A 124 T-ENGQANYQITL 135 (138)
T ss_dssp C-STTEEEEEEEE
T ss_pred e-cCCceEEEEEE
Confidence 4 23644445444
No 5
>2krs_A Probable enterotoxin; all beta, SH3, ENTD, CPF_0587, CPE0606, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium perfringens}
Probab=15.51 E-value=62 Score=20.78 Aligned_cols=16 Identities=6% Similarity=-0.114 Sum_probs=13.9
Q ss_pred ceecCCCCCCccceee
Q 038058 68 PVTKDQSFQSPEAATA 83 (170)
Q Consensus 68 ~lt~gp~~~Sk~VGRa 83 (170)
.|+.+|+.+|++|+++
T Consensus 12 nvRs~P~~~~~vi~~l 27 (74)
T 2krs_A 12 NMRSGPGSNYGVIGTL 27 (74)
T ss_dssp EEESSSSTTTCEEEEE
T ss_pred EEEcCCCCCChHHEEE
Confidence 6889999999999876
No 6
>2kq8_A Cell WALL hydrolase; GFT protein structure, NESG, PSI, SH3 domain, structural genomics, protein structure initiative; NMR {Bacillus thuringiensis serovarkonkukian}
Probab=15.41 E-value=50 Score=20.96 Aligned_cols=16 Identities=6% Similarity=-0.066 Sum_probs=13.5
Q ss_pred ceecCCCCCCccceee
Q 038058 68 PVTKDQSFQSPEAATA 83 (170)
Q Consensus 68 ~lt~gp~~~Sk~VGRa 83 (170)
.|+.+|+.+++++|++
T Consensus 13 nvRsgP~~~~~ii~~l 28 (70)
T 2kq8_A 13 NVRSGEGTNYRIIGAL 28 (70)
T ss_dssp CSSSSSSSCTTSCCCC
T ss_pred EEEcCCCCCCceEEEE
Confidence 5788999999999875
No 7
>2kt8_A Probable surface protein; SH3 family, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium perfringens} PDB: 2kyb_A
Probab=13.69 E-value=99 Score=19.99 Aligned_cols=16 Identities=19% Similarity=0.071 Sum_probs=13.0
Q ss_pred ceecCCCCCCccceee
Q 038058 68 PVTKDQSFQSPEAATA 83 (170)
Q Consensus 68 ~lt~gp~~~Sk~VGRa 83 (170)
.|+.+|+.+|+++|.+
T Consensus 14 nvR~~Ps~~~~ii~~l 29 (76)
T 2kt8_A 14 NVREGASTSSKVIGSL 29 (76)
T ss_dssp EEESSSSTTSCEEEEE
T ss_pred EEEcCCCCCChhhEEE
Confidence 5788999988888764
No 8
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=12.98 E-value=2.1e+02 Score=20.82 Aligned_cols=57 Identities=16% Similarity=0.158 Sum_probs=35.8
Q ss_pred CCCCcccEEEEeeceecCCCCCCccceeeEEEEEEecCCCceeEEEEEEEEecCCcCCeEEEEeccCCCCCceeeE
Q 038058 55 GNYEFGMVVVFNDPVTKDQSFQSPEAATAQGFYFYNMKNDYSAWFAYTLVFNSSEYKGTLNIMGADLMPEKTRDLS 130 (170)
Q Consensus 55 ~~~~FG~~~V~Dd~lt~gp~~~Sk~VGRaQG~~~~~~~~~~~~~~~~~~vF~~g~~~GtL~v~G~~~~~~~~~E~a 130 (170)
++..-|+.+-+.| ++|.-.+++.+|+ .....+++.|+| |+...+-|+.+.....|+|
T Consensus 63 GpP~~G~~V~V~W--~DG~~y~a~f~g~-------------~~~~~YtV~FeD----gs~~~~kR~~iyt~~E~lP 119 (123)
T 2xdp_A 63 GPPAEGEVVQVKW--PDGKLYGAKYFGS-------------NIAHMYQVEFED----GSQIAMKREDIYTLDEELP 119 (123)
T ss_dssp CCCCTTCEEEEEC--TTSCEEEEEEEEE-------------EEEEEEEEECTT----SCEEEEEGGGCCCSSSCCC
T ss_pred CCCCCCCEEEEEc--CCCCEEeEEEeee-------------eeEEEEEEEECC----CCeEEecHHHccccccccc
Confidence 3455688888877 4555544444443 334567889986 4556667877776666665
No 9
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=10.39 E-value=1.8e+02 Score=21.03 Aligned_cols=57 Identities=21% Similarity=0.209 Sum_probs=33.7
Q ss_pred CCCCcccEEEEeeceecCCCCCCccceeeEEEEEEecCCCceeEEEEEEEEecCCcCCeEEEEeccCCCCCceeeE
Q 038058 55 GNYEFGMVVVFNDPVTKDQSFQSPEAATAQGFYFYNMKNDYSAWFAYTLVFNSSEYKGTLNIMGADLMPEKTRDLS 130 (170)
Q Consensus 55 ~~~~FG~~~V~Dd~lt~gp~~~Sk~VGRaQG~~~~~~~~~~~~~~~~~~vF~~g~~~GtL~v~G~~~~~~~~~E~a 130 (170)
++..-|..+-+.| ++|.-.+++-+|+ .....+++.|+| |+...+-|+.+.....|+|
T Consensus 62 GpP~~G~~V~V~W--~DG~~y~a~f~g~-------------~~~~~Y~V~feD----gs~~~~kR~~iyt~~E~lP 118 (118)
T 2qqr_A 62 GPPAEGEVVQVRW--TDGQVYGAKFVAS-------------HPIQMYQVEFED----GSQLVVKRDDVYTLDEELP 118 (118)
T ss_dssp CCCCTTCEEEEEC--TTSCEEEEEEEEE-------------EEEEEEEEEETT----SCEEEECGGGEEETTSCCC
T ss_pred CCCCCCCEEEEEc--CCCCEeeeEEece-------------eEEEEEEEEECC----CCEEEEcHHHeeccccCCc
Confidence 3455688888877 4665555555544 334567888986 4344555655544444443
No 10
>3h6j_A Neuraminidase, sialidase; six-bladed beta-propeller, cell WALL, glycosidase, hydrolase, peptidoglycan-anchor, secreted; 1.60A {Pseudomonas aeruginosa} PDB: 2w38_A
Probab=9.77 E-value=1.9e+02 Score=24.14 Aligned_cols=51 Identities=24% Similarity=0.231 Sum_probs=29.5
Q ss_pred eeEEEEEEEEecCCcCC-eEEEE-eccCCCCCceeeEEEeccccc---------cCceeEEEEE
Q 038058 96 SAWFAYTLVFNSSEYKG-TLNIM-GADLMPEKTRDLSVVGGTGDF---------FMARGIATFT 148 (170)
Q Consensus 96 ~~~~~~~~vF~~g~~~G-tL~v~-G~~~~~~~~~E~aVVGGTG~F---------r~ArG~a~~~ 148 (170)
.|-..|---|+++.+|| --++. |.-.+ ....-+-|=|||.| |+|.||-..+
T Consensus 374 twnivmpsyfndgghkgsgaqvevgslni--rlgtgaavwgtgyfggidnsattrlatgyyrvr 435 (438)
T 3h6j_A 374 TWNIVMPSYFNDGGHKGSGAQVEVGSLNI--RLGTGAAVWGTGYFGGIDNSATTRLATGYYRVR 435 (438)
T ss_dssp CCEECCCEEEESSSEEEESEEEEECSSEE--EEEECSBSBCCSCBTTTBCSGGGCBSEEEEEEE
T ss_pred ceeEeccceecCCCcCCccceEEeeeEEE--EeccCceeeeccccccccchhhheeccceEEEE
Confidence 45566777899999998 33332 22111 12223445577776 6777776654
Done!