BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038067
(510 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 350 bits (898), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 195/401 (48%), Positives = 259/401 (64%), Gaps = 57/401 (14%)
Query: 72 LPTPKEICKGLDEFVIGQERAKKSHIFCILVDMLVYVIGACCAVYNHYKRIYHSSLQKEL 131
LPTP EI LD++VIGQE+AKK AVYNHYKR+
Sbjct: 3 LPTPHEIRNHLDDYVIGQEQAKKV---------------LAVAVYNHYKRLR-------- 39
Query: 132 VSDHLYVDSILGSGVKSGNCNVENDEIVELEKSNVLLMGPTGSGKTLLAKTLARIVNVPF 191
N + N VEL KSN+LL+GPTGSGKTLLA+TLAR+++VPF
Sbjct: 40 ------------------NGDTSNG--VELGKSNILLIGPTGSGKTLLAETLARLLDVPF 79
Query: 192 TITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV-KAESRNNGR 250
T+ DAT LT+AGYVGED E+++ KLL D+DV+ AQRGIVYID++DKI K+++ + R
Sbjct: 80 TMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITR 139
Query: 251 DVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTI 310
DVSGEGVQQALLK++EGTV VP P G RKHP+ + + +DT ILFICGGAF GL+K I
Sbjct: 140 DVSGEGVQQALLKLIEGTVAAVP-PQGG-RKHPQQEFLQVDTSKILFICGGAFAGLDKVI 197
Query: 311 SERRQD-SSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILV 369
S R + S IGFGA V+A +D LL V+ DL+ +GLIPEFIGR P++
Sbjct: 198 SHRVETGSGIGFGATVKAK------SDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVA 251
Query: 370 SLSALNEDQLVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGL 429
+L+ L+E+ L+Q+L EPKNAL +QY+ +F++ V L F D+AL IAKKAMA+ TGARGL
Sbjct: 252 TLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGL 311
Query: 430 RALLENILTEAMFEIPETKIGTSSVNAVLVDKEAVGSVDAP 470
R+++E L + M+++P + V V++D+ + P
Sbjct: 312 RSIVEAALLDTMYDLPSME----DVEKVVIDESVIDGQSKP 348
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 350 bits (898), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 195/401 (48%), Positives = 259/401 (64%), Gaps = 57/401 (14%)
Query: 72 LPTPKEICKGLDEFVIGQERAKKSHIFCILVDMLVYVIGACCAVYNHYKRIYHSSLQKEL 131
LPTP EI LD++VIGQE+AKK AVYNHYKR+
Sbjct: 3 LPTPHEIRNHLDDYVIGQEQAKKV---------------LAVAVYNHYKRLR-------- 39
Query: 132 VSDHLYVDSILGSGVKSGNCNVENDEIVELEKSNVLLMGPTGSGKTLLAKTLARIVNVPF 191
N + N VEL KSN+LL+GPTGSGKTLLA+TLAR+++VPF
Sbjct: 40 ------------------NGDTSNG--VELGKSNILLIGPTGSGKTLLAETLARLLDVPF 79
Query: 192 TITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV-KAESRNNGR 250
T+ DAT LT+AGYVGED E+++ KLL D+DV+ AQRGIVYID++DKI K+++ + R
Sbjct: 80 TMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITR 139
Query: 251 DVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTI 310
DVSGEGVQQALLK++EGTV VP P G RKHP+ + + +DT ILFICGGAF GL+K I
Sbjct: 140 DVSGEGVQQALLKLIEGTVAAVP-PQGG-RKHPQQEFLQVDTSKILFICGGAFAGLDKVI 197
Query: 311 SERRQD-SSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILV 369
S R + S IGFGA V+A +D LL V+ DL+ +GLIPEFIGR P++
Sbjct: 198 SHRVETGSGIGFGATVKAK------SDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVA 251
Query: 370 SLSALNEDQLVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGL 429
+L+ L+E+ L+Q+L EPKNAL +QY+ +F++ V L F D+AL IAKKAMA+ TGARGL
Sbjct: 252 TLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGL 311
Query: 430 RALLENILTEAMFEIPETKIGTSSVNAVLVDKEAVGSVDAP 470
R+++E L + M+++P + V V++D+ + P
Sbjct: 312 RSIVEAALLDTMYDLPSME----DVEKVVIDESVIDGQSEP 348
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 320 bits (821), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 177/379 (46%), Positives = 255/379 (67%), Gaps = 42/379 (11%)
Query: 72 LPTPKEICKGLDEFVIGQERAKKSHIFCILVDMLVYVIGACCAVYNHYKRI-YHSSLQKE 130
+P PKE+ LD +VIGQE+AKK +F + AVYNHYKR+ + L+K+
Sbjct: 9 IPAPKELKAVLDNYVIGQEQAKK--VFSV-------------AVYNHYKRLSFKEKLKKQ 53
Query: 131 LVSDHLYVDSILGSGVKSGNCNVENDEIVELEKSNVLLMGPTGSGKTLLAKTLARIVNVP 190
D N +E+ E VEL KSN+LL+GPTGSGKTL+A+TLA+ +++P
Sbjct: 54 DNQD--------------SNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIP 99
Query: 191 FTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIVK-AESRNNG 249
I+DAT+LT+AGYVGED E++L +LL A+D++V+ AQ+GIV+IDE+DKI + +E+R+
Sbjct: 100 IAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSIT 159
Query: 250 RDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKT 309
RDVSGEGVQQALLK++EG++VN IP G RKHP G+ I IDT DILFIC GAF GL +
Sbjct: 160 RDVSGEGVQQALLKIVEGSLVN--IPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEI 217
Query: 310 ISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILV 369
I +R + +GF + ++L V + DLV YGLIPE IGR P+L
Sbjct: 218 IKKRTTQNVLGFTQEKMSKKE---------QEAILHLVQTHDLVTYGLIPELIGRLPVLS 268
Query: 370 SLSALNEDQLVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGL 429
+L +++ + +V +L +PKNAL +QY+++F M+ V L F ++A++ IA+ A+ + TGARGL
Sbjct: 269 TLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGL 328
Query: 430 RALLENILTEAMFEIPETK 448
RA++E+ + MF++P+ K
Sbjct: 329 RAIIEDFCLDIMFDLPKLK 347
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 148 bits (373), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 119/400 (29%), Positives = 182/400 (45%), Gaps = 111/400 (27%)
Query: 74 TPKEICKGLDEFVIGQERAKKSHIFCILVDMLVYVIGACCAVYNHYKRIYHSSLQKELVS 133
TP+EI LD+ +IGQ AK++ A+ N ++R+ LQ+ L
Sbjct: 5 TPREIVSELDQHIIGQADAKRA---------------VAIALRNRWRRM---QLQEPLRH 46
Query: 134 DHLYVDSILGSGVKSGNCNVENDEIVELEKSNVLLMGPTGSGKTLLAKTLARIVNVPFTI 193
E+ N+L++GPTG GKT +A+ LA++ N PF
Sbjct: 47 --------------------------EVTPKNILMIGPTGVGKTEIARRLAKLANAPFIK 80
Query: 194 TDATALTQAGYVGEDAESVLYKLLAAADFDVEAA-QRGIVYIDEVDKIVKAESRNNGRDV 252
+AT T+ GYVG++ +S++ L +A ++A Q GIV+IDE+DKI K + +G DV
Sbjct: 81 VEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICK-KGEYSGADV 139
Query: 253 SGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISE 312
S EGVQ+ LL ++EG+ V+ KH + T ILFI GAF
Sbjct: 140 SREGVQRDLLPLVEGSTVST--------KHGM-----VKTDHILFIASGAF--------- 177
Query: 313 RRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLS 372
+ +D LIPE GR PI V L+
Sbjct: 178 -----------------QVARPSD--------------------LIPELQGRLPIRVELT 200
Query: 373 ALNEDQLVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAM-----AKNTGAR 427
AL+ ++L EP +L QYK + + V + FT DA++ IA+ A +N GAR
Sbjct: 201 ALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGAR 260
Query: 428 GLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAVGSV 467
L ++E ++ + F + T +++A V +A+G V
Sbjct: 261 RLHTVMERLMDKISFSASDMNGQTVNIDAAYV-ADALGEV 299
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 110/245 (44%), Gaps = 66/245 (26%)
Query: 228 QRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDN 287
Q GIV+IDE+DKI K + +G DVS EGVQ+ LL ++EG+ V+ KH
Sbjct: 250 QNGIVFIDEIDKICK-KGEYSGADVSREGVQRDLLPLVEGSTVST--------KHGM--- 297
Query: 288 IPIDTKDILFICGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESV 347
+ T ILFI GAF + +D
Sbjct: 298 --VKTDHILFIASGAF--------------------------QVARPSD----------- 318
Query: 348 DSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFSMNNVKLHF 407
LIPE GR PI V L+AL+ ++L EP +L QYK + + V + F
Sbjct: 319 ---------LIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAF 369
Query: 408 TDDALRLIAKKAM-----AKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKE 462
T DA++ IA+ A +N GAR L ++E ++ + F + T +++A V +
Sbjct: 370 TTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYV-AD 428
Query: 463 AVGSV 467
A+G V
Sbjct: 429 ALGEV 433
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 57/189 (30%)
Query: 74 TPKEICKGLDEFVIGQERAKKSHIFCILVDMLVYVIGACCAVYNHYKRIYHSSLQKELVS 133
TP+EI LD+ +IGQ AK++ A+ N ++R+ LQ+ L
Sbjct: 5 TPREIVSELDQHIIGQADAKRA---------------VAIALRNRWRRM---QLQEPLRH 46
Query: 134 DHLYVDSILGSGVKSGNCNVENDEIVELEKSNVLLMGPTGSGKTLLAKTLARIVNVPFTI 193
E+ N+L++GPTG GKT +A+ LA++ N PF
Sbjct: 47 --------------------------EVTPKNILMIGPTGVGKTEIARRLAKLANAPFIK 80
Query: 194 TDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVS 253
+AT T+ GYVG++ +S++ L +A +V E+ A++R DV+
Sbjct: 81 VEATKFTEVGYVGKEVDSIIRDLTDSA--------MKLVRQQEI-----AKNRARAEDVA 127
Query: 254 GEGVQQALL 262
E + ALL
Sbjct: 128 EERILDALL 136
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 108/245 (44%), Gaps = 66/245 (26%)
Query: 228 QRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDN 287
Q GIV+IDE+DKI K + +G DVS EGVQ+ LL ++EG+ V+ KH
Sbjct: 250 QNGIVFIDEIDKICK-KGEYSGADVSREGVQRDLLPLVEGSTVST--------KHGX--- 297
Query: 288 IPIDTKDILFICGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESV 347
+ T ILFI GAF + +D
Sbjct: 298 --VKTDHILFIASGAF--------------------------QVARPSD----------- 318
Query: 348 DSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFSMNNVKLHF 407
LIPE GR PI V L+AL+ ++L EP +L QYK + + V + F
Sbjct: 319 ---------LIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALXATEGVNIAF 369
Query: 408 TDDALRLIAKKAM-----AKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKE 462
T DA++ IA+ A +N GAR L + E + + F + T +++A V +
Sbjct: 370 TTDAVKKIAEAAFRVNEKTENIGARRLHTVXERLXDKISFSASDXNGQTVNIDAAYV-AD 428
Query: 463 AVGSV 467
A+G V
Sbjct: 429 ALGEV 433
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 83/189 (43%), Gaps = 57/189 (30%)
Query: 74 TPKEICKGLDEFVIGQERAKKSHIFCILVDMLVYVIGACCAVYNHYKRIYHSSLQKELVS 133
TP+EI LD+ +IGQ AK++ A+ N ++R LQ+ L
Sbjct: 5 TPREIVSELDQHIIGQADAKRA---------------VAIALRNRWRR---XQLQEPLRH 46
Query: 134 DHLYVDSILGSGVKSGNCNVENDEIVELEKSNVLLMGPTGSGKTLLAKTLARIVNVPFTI 193
E+ N+L +GPTG GKT +A+ LA++ N PF
Sbjct: 47 --------------------------EVTPKNILXIGPTGVGKTEIARRLAKLANAPFIK 80
Query: 194 TDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVS 253
+AT T+ GYVG++ +S++ L +A +V E+ A++R DV+
Sbjct: 81 VEATKFTEVGYVGKEVDSIIRDLTDSA--------XKLVRQQEI-----AKNRARAEDVA 127
Query: 254 GEGVQQALL 262
E + ALL
Sbjct: 128 EERILDALL 136
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 100/239 (41%), Gaps = 65/239 (27%)
Query: 228 QRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDN 287
Q GIV+IDE+DKI K ++G DVS EGVQ+ LL ++EG V+ KH
Sbjct: 248 QHGIVFIDEIDKICK-RGESSGPDVSREGVQRDLLPLVEGCTVST--------KHGM--- 295
Query: 288 IPIDTKDILFICGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESV 347
+ T ILFI GAF P
Sbjct: 296 --VKTDHILFIASGAF----------------QIAKP----------------------- 314
Query: 348 DSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFSMNNVKLHF 407
LIPE GR PI V L AL ++L EP ++ QYK + + V + F
Sbjct: 315 -------SDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMATEGVNIEF 367
Query: 408 TDDALRLIAKKAM-----AKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDK 461
TD ++ IA+ A +N GAR L +LE ++ E ++ + +++A V K
Sbjct: 368 TDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQNITIDADYVSK 426
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 70/147 (47%), Gaps = 44/147 (29%)
Query: 74 TPKEICKGLDEFVIGQERAKKSHIFCILVDMLVYVIGACCAVYNHYKRIYHSSLQKELVS 133
TP+EI LD+ +IGQ+ AK+S A+ N ++R+ L +EL
Sbjct: 4 TPREIVSELDKHIIGQDNAKRS---------------VAIALRNRWRRM---QLNEELRH 45
Query: 134 DHLYVDSILGSGVKSGNCNVENDEIVELEKSNVLLMGPTGSGKTLLAKTLARIVNVPFTI 193
E+ N+L++GPTG GKT +A+ LA++ N PF
Sbjct: 46 --------------------------EVTPKNILMIGPTGVGKTEIARRLAKLANAPFIK 79
Query: 194 TDATALTQAGYVGEDAESVLYKLLAAA 220
+AT T+ GYVG++ +S++ L AA
Sbjct: 80 VEATKFTEVGYVGKEVDSIIRDLTDAA 106
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 100/239 (41%), Gaps = 65/239 (27%)
Query: 228 QRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDN 287
Q GIV+IDE+DKI K ++G DVS EGVQ+ LL ++EG V+ KH
Sbjct: 255 QHGIVFIDEIDKICK-RGESSGPDVSREGVQRDLLPLVEGCTVST--------KHGM--- 302
Query: 288 IPIDTKDILFICGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESV 347
+ T ILFI GAF P
Sbjct: 303 --VKTDHILFIASGAF----------------QIAKP----------------------- 321
Query: 348 DSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFSMNNVKLHF 407
LIPE GR PI V L AL ++L EP ++ QYK + + V + F
Sbjct: 322 -------SDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMATEGVNIEF 374
Query: 408 TDDALRLIAKKAM-----AKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDK 461
TD ++ IA+ A +N GAR L +LE ++ E ++ + +++A V K
Sbjct: 375 TDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQNITIDADYVSK 433
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 70/147 (47%), Gaps = 44/147 (29%)
Query: 74 TPKEICKGLDEFVIGQERAKKSHIFCILVDMLVYVIGACCAVYNHYKRIYHSSLQKELVS 133
TP+EI LD+ +IGQ+ AK+S A+ N ++R+ L +EL
Sbjct: 11 TPREIVSELDKHIIGQDNAKRS---------------VAIALRNRWRRM---QLNEELRH 52
Query: 134 DHLYVDSILGSGVKSGNCNVENDEIVELEKSNVLLMGPTGSGKTLLAKTLARIVNVPFTI 193
E+ N+L++GPTG GKT +A+ LA++ N PF
Sbjct: 53 --------------------------EVTPKNILMIGPTGVGKTEIARRLAKLANAPFIK 86
Query: 194 TDATALTQAGYVGEDAESVLYKLLAAA 220
+AT T+ GYVG++ +S++ L AA
Sbjct: 87 VEATKFTEVGYVGKEVDSIIRDLTDAA 113
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 100/239 (41%), Gaps = 65/239 (27%)
Query: 228 QRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDN 287
Q GIV+IDE+DKI K ++G DVS EGVQ+ LL ++EG V+ KH
Sbjct: 249 QHGIVFIDEIDKICK-RGESSGPDVSREGVQRDLLPLVEGCTVST--------KHGM--- 296
Query: 288 IPIDTKDILFICGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESV 347
+ T ILFI GAF P
Sbjct: 297 --VKTDHILFIASGAF----------------QIAKP----------------------- 315
Query: 348 DSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFSMNNVKLHF 407
LIPE GR PI V L AL ++L EP ++ QYK + + V + F
Sbjct: 316 -------SDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMATEGVNIEF 368
Query: 408 TDDALRLIAKKAM-----AKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDK 461
TD ++ IA+ A +N GAR L +LE ++ E ++ + +++A V K
Sbjct: 369 TDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQNITIDADYVSK 427
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 70/147 (47%), Gaps = 44/147 (29%)
Query: 74 TPKEICKGLDEFVIGQERAKKSHIFCILVDMLVYVIGACCAVYNHYKRIYHSSLQKELVS 133
TP+EI LD+ +IGQ+ AK+S A+ N ++R+ L +EL
Sbjct: 5 TPREIVSELDKHIIGQDNAKRS---------------VAIALRNRWRRM---QLNEELRH 46
Query: 134 DHLYVDSILGSGVKSGNCNVENDEIVELEKSNVLLMGPTGSGKTLLAKTLARIVNVPFTI 193
E+ N+L++GPTG GKT +A+ LA++ N PF
Sbjct: 47 --------------------------EVTPKNILMIGPTGVGKTEIARRLAKLANAPFIK 80
Query: 194 TDATALTQAGYVGEDAESVLYKLLAAA 220
+AT T+ GYVG++ +S++ L AA
Sbjct: 81 VEATKFTEVGYVGKEVDSIIRDLTDAA 107
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 8/106 (7%)
Query: 166 VLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVE 225
+LL GP G+GKTL+ K +A F A++LT + +VGE E ++ L A A
Sbjct: 120 ILLFGPPGTGKTLIGKCIASQSGATFFSISASSLT-SKWVGE-GEKMVRALFAVA----R 173
Query: 226 AAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVN 271
Q +++IDE+D ++ R +G S ++ L L+G +
Sbjct: 174 CQQPAVIFIDEIDSLLS--QRGDGEHESSRRIKTEFLVQLDGATTS 217
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 48/88 (54%), Gaps = 7/88 (7%)
Query: 166 VLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVE 225
+LL GP G+GKT+LAK +A N F A +LT + YVGE E ++ L A A
Sbjct: 151 LLLFGPPGNGKTMLAKAVAAESNATFFNISAASLT-SKYVGE-GEKLVRALFAVA----R 204
Query: 226 AAQRGIVYIDEVDKIVKAESRNNGRDVS 253
Q I++ID+VD ++ E R D S
Sbjct: 205 ELQPSIIFIDQVDSLL-CERREGEHDAS 231
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 166 VLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVE 225
+LL GP G+GKTLLA+ +A + F A +LT + YVG D E ++ L A A
Sbjct: 57 LLLFGPPGNGKTLLARAVATECSATFLNISAASLT-SKYVG-DGEKLVRALFAVA----R 110
Query: 226 AAQRGIVYIDEVD 238
Q I++IDEVD
Sbjct: 111 HMQPSIIFIDEVD 123
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Query: 166 VLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVE 225
VLL+GP G+GKTLLAK +A +VPF ++ + +VG A V L A
Sbjct: 47 VLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGASRV-RDLFETAKKQAP 104
Query: 226 AAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKML 265
+ I++IDE+D I K SR G VSG ++ L L
Sbjct: 105 S----IIFIDEIDAIGK--SRAAGGVVSGNDEREQTLNQL 138
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 6/75 (8%)
Query: 166 VLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVE 225
VLL GP G+GKTLLAK +A + F + A+ + Y+GE A ++ ++ A A +
Sbjct: 218 VLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDK-YIGESA-RIIREMFAYA----K 271
Query: 226 AAQRGIVYIDEVDKI 240
+ I+++DEVD I
Sbjct: 272 EHEPCIIFMDEVDAI 286
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 12/102 (11%)
Query: 166 VLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESV--LYKLLAAADFD 223
+LL GP G+GKTLLAK +A N F + L + ++GE A V ++KL
Sbjct: 54 ILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKK-FIGEGASLVKDIFKL------- 105
Query: 224 VEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKML 265
+ I++IDE+D I A R + VQ+ L+++L
Sbjct: 106 AKEKAPSIIFIDEIDAI--AAKRTDALTGGDREVQRTLMQLL 145
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 8/104 (7%)
Query: 164 SNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFD 223
S +LL GP G+GK+ LAK +A N F ++ L + ++GE +E ++ +L A A
Sbjct: 61 SGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV-SKWMGE-SEKLVKQLFAMA--- 115
Query: 224 VEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEG 267
+ I++IDEVD + +R G + ++ LL + G
Sbjct: 116 -RENKPSIIFIDEVDALTG--TRGEGESEASRRIKTELLVQMNG 156
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 8/100 (8%)
Query: 166 VLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVE 225
V+L GP G+GKTLLA+ +A + F L Q Y+GE + V + A +
Sbjct: 185 VILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQK-YIGEGSRMVRELFVMAREH--- 240
Query: 226 AAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKML 265
I+++DE+D I +R G VQ+ +L++L
Sbjct: 241 --APSIIFMDEIDSI--GSTRVEGSGGGDSEVQRTMLELL 276
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 166 VLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVE 225
+LL+GP G+GKTLLA+ +A NVPF + + +VG A V L A A +
Sbjct: 52 ILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL-FVGVGAARV-RDLFAQA----K 105
Query: 226 AAQRGIVYIDEVDKIVKAESR--NNGRDVSGEGVQQALLKM 264
A IV+IDE+D + + G D + + Q L++M
Sbjct: 106 AHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEM 146
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 41/82 (50%), Gaps = 12/82 (14%)
Query: 167 LLMGPTGSGKTLLAKTLARIVNVPF-TITDATALTQAGYVGEDAESVLYKLLAAADFDVE 225
LL+GP G GKTLLAK +A VPF + A + G +G L+K E
Sbjct: 43 LLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFK---------E 93
Query: 226 AAQRG--IVYIDEVDKIVKAES 245
A R IVYIDE+D + K S
Sbjct: 94 ARARAPCIVYIDEIDAVGKKRS 115
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 8/104 (7%)
Query: 164 SNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFD 223
S +LL GP G+GK+ LAK +A N F ++ L + ++GE +E ++ +L A A
Sbjct: 70 SGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV-SKWMGE-SEKLVKQLFAMA--- 124
Query: 224 VEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEG 267
+ I++ID+VD + +R G + ++ LL + G
Sbjct: 125 -RENKPSIIFIDQVDALTG--TRGEGESEASRRIKTELLVQMNG 165
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 8/104 (7%)
Query: 164 SNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFD 223
S +LL GP G+GK+ LAK +A N F ++ L + ++GE +E ++ +L A A
Sbjct: 52 SGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV-SKWMGE-SEKLVKQLFAMA--- 106
Query: 224 VEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEG 267
+ I++ID+VD + +R G + ++ LL + G
Sbjct: 107 -RENKPSIIFIDQVDALTG--TRGEGESEASRRIKTELLVQMNG 147
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Query: 166 VLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVE 225
VL++GP G+GKTLLAK +A VPF + + +VG A V A +
Sbjct: 48 VLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQA-----K 101
Query: 226 AAQRGIVYIDEVDKI--VKAESRNNGRDVSGEGVQQALLKM 264
A I++IDE+D + + G D + + Q L++M
Sbjct: 102 KAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEM 142
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 8/104 (7%)
Query: 164 SNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFD 223
S +LL GP G+GK+ LAK +A N F ++ L + ++GE +E ++ +L A A
Sbjct: 85 SGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV-SKWMGE-SEKLVKQLFAMA--- 139
Query: 224 VEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEG 267
+ I++ID+VD + +R G + ++ LL + G
Sbjct: 140 -RENKPSIIFIDQVDALTG--TRGEGESEASRRIKTELLVQMNG 180
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 48/99 (48%), Gaps = 8/99 (8%)
Query: 167 LLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEA 226
L+ GP G+GKTLLA+ A N F A L Q Y+GE A KL+ A +
Sbjct: 219 LMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQM-YIGEGA-----KLVRDAFALAKE 272
Query: 227 AQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKML 265
I++IDE+D I R + VQ+ +L++L
Sbjct: 273 KAPTIIFIDELDAI--GTKRFDSEKSGDREVQRTMLELL 309
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 166 VLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVE 225
+LL+GP G+G TLLA+ +A NVPF + + +VG A V L A A +
Sbjct: 52 ILLVGPPGTGATLLARAVAGEANVPFFHISGSDFVEL-FVGVGAARV-RDLFAQA----K 105
Query: 226 AAQRGIVYIDEVDKIVKAESR--NNGRDVSGEGVQQALLKM 264
A IV+IDE+D + + G D + + Q L++M
Sbjct: 106 AHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEM 146
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 8/102 (7%)
Query: 166 VLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVE 225
+LL GP G+GKTL+A+ +A F + + + + GE +ES L K A+ +
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM-SKLAGE-SESNLRKAFEEAEKNAP 298
Query: 226 AAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEG 267
A I++IDE+D I + +G +V V Q LL +++G
Sbjct: 299 A----IIFIDELDAIAPKREKTHG-EVERRIVSQ-LLTLMDG 334
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 8/79 (10%)
Query: 166 VLLMGPTGSGKTLLAKTLARIVNVPF-TITDATALTQAGYVGEDAESVLYKLLAAADFDV 224
VL GP G GKTLLAK +A F +I LT + GE +E+ + ++ A
Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM--WFGE-SEANVREIFDKA---- 566
Query: 225 EAAQRGIVYIDEVDKIVKA 243
A +++ DE+D I KA
Sbjct: 567 RQAAPCVLFFDELDSIAKA 585
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 8/102 (7%)
Query: 166 VLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVE 225
+LL GP G+GKTL+A+ +A F + + + + GE +ES L K A+ +
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM-SKLAGE-SESNLRKAFEEAEKNAP 298
Query: 226 AAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEG 267
A I++IDE+D I + +G +V V Q LL +++G
Sbjct: 299 A----IIFIDELDAIAPKREKTHG-EVERRIVSQ-LLTLMDG 334
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 8/79 (10%)
Query: 166 VLLMGPTGSGKTLLAKTLARIVNVPF-TITDATALTQAGYVGEDAESVLYKLLAAADFDV 224
VL GP G GKTLLAK +A F +I LT + GE +E+ + ++ A
Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM--WFGE-SEANVREIFDKA---- 566
Query: 225 EAAQRGIVYIDEVDKIVKA 243
A +++ DE+D I KA
Sbjct: 567 RQAAPCVLFFDELDSIAKA 585
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 8/102 (7%)
Query: 166 VLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVE 225
+LL GP G+GKTL+A+ +A F + + + + GE +ES L K A+ +
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI-MSKLAGE-SESNLRKAFEEAEKNAP 298
Query: 226 AAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEG 267
A I++IDE+D I + +G +V V Q LL +++G
Sbjct: 299 A----IIFIDELDAIAPKREKTHG-EVERRIVSQ-LLTLMDG 334
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 8/102 (7%)
Query: 166 VLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVE 225
+LL GP G+GKTL+A+ +A F + + + + GE +ES L K A+ +
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI-MSKLAGE-SESNLRKAFEEAEKNAP 298
Query: 226 AAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEG 267
A I++IDE+D I + +G +V V Q LL +++G
Sbjct: 299 A----IIFIDELDAIAPKREKTHG-EVERRIVSQ-LLTLMDG 334
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 8/102 (7%)
Query: 166 VLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVE 225
+LL GP G+GKTL+A+ +A F + + + + GE +ES L K A+ +
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI-MSKLAGE-SESNLRKAFEEAEKNAP 298
Query: 226 AAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEG 267
A I++IDE+D I + +G +V V Q LL +++G
Sbjct: 299 A----IIFIDELDAIAPKREKTHG-EVERRIVSQ-LLTLMDG 334
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 8/102 (7%)
Query: 166 VLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVE 225
+LL GP G+GKTL+A+ +A F + + + + GE +ES L K A+ +
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI-MSKLAGE-SESNLRKAFEEAEKNAP 298
Query: 226 AAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEG 267
A I++IDE+D I + +G +V V Q LL +++G
Sbjct: 299 A----IIFIDELDAIAPKREKTHG-EVERRIVSQ-LLTLMDG 334
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 12/102 (11%)
Query: 166 VLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESV--LYKLLAAADFD 223
VLL GP G+GKT+L K +A F + + Y+GE V +++L
Sbjct: 209 VLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHK-YLGEGPRMVRDVFRL------- 260
Query: 224 VEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKML 265
I++IDEVD I A R + + S VQ+ L+++L
Sbjct: 261 ARENAPSIIFIDEVDSI--ATKRFDAQTGSDREVQRILIELL 300
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 56/108 (51%), Gaps = 11/108 (10%)
Query: 166 VLLMGPTGSGKTLLAKTLARIVN--VPFTITDATALTQAGYVGEDAESVLYKLLAAADFD 223
+LL GP G+GK+ LAK +A N F+I+ + +++ ++GE +E ++ L A
Sbjct: 48 ILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK--WLGE-SEKLVKNLFQLA--- 101
Query: 224 VEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVN 271
+ I++IDE+D + + S N + ++ L ++G V+
Sbjct: 102 -RENKPSIIFIDEIDSLCGSRSENESE--AARRIKTEFLVQMQGVGVD 146
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 56/108 (51%), Gaps = 11/108 (10%)
Query: 166 VLLMGPTGSGKTLLAKTLARIVN--VPFTITDATALTQAGYVGEDAESVLYKLLAAADFD 223
+LL GP G+GK+ LAK +A N F+I+ + +++ ++GE +E ++ L A
Sbjct: 170 ILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK--WLGE-SEKLVKNLFQLA--- 223
Query: 224 VEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVN 271
+ I++IDE+D + + S N + ++ L ++G V+
Sbjct: 224 -RENKPSIIFIDEIDSLCGSRSENESE--AARRIKTEFLVQMQGVGVD 268
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 14/104 (13%)
Query: 166 VLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVE 225
VLL+GP G GKT LA+ +A VPF + + +VG A V E
Sbjct: 76 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM-FVGVGAARVRDLF--------E 126
Query: 226 AAQRG---IVYIDEVDKIVKAESR--NNGRDVSGEGVQQALLKM 264
A+R IV+IDE+D + + G D + + Q L++M
Sbjct: 127 TAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEM 170
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 48/105 (45%), Gaps = 14/105 (13%)
Query: 165 NVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDV 224
VLL+GP G GKT LA+ +A VPF + + +VG A V
Sbjct: 51 GVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM-FVGVGAARVRDLF-------- 101
Query: 225 EAAQRG---IVYIDEVDKIVKAESR--NNGRDVSGEGVQQALLKM 264
E A+R IV+IDE+D + + G D + + Q L++M
Sbjct: 102 ETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEM 146
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 166 VLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVE 225
+LL GP G+GKTL A+ +A + F + L Q YVGE A V +L A
Sbjct: 246 ILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQK-YVGEGARMV-RELFEMA----R 299
Query: 226 AAQRGIVYIDEVDKI 240
+ I++ DE+D +
Sbjct: 300 TKKACIIFFDEIDAV 314
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 14/104 (13%)
Query: 166 VLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVE 225
VLL+GP G GKT LA+ +A VPF + + +VG A V D E
Sbjct: 76 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM-FVGVGAARV-------RDL-FE 126
Query: 226 AAQRG---IVYIDEVDKIVKAESR--NNGRDVSGEGVQQALLKM 264
A+R IV+IDE+D + + G D + + Q L++M
Sbjct: 127 TAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEM 170
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 14/104 (13%)
Query: 166 VLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVE 225
VLL+GP G GKT LA+ +A VPF + + +VG A V D E
Sbjct: 67 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM-FVGVGAARV-------RDL-FE 117
Query: 226 AAQRG---IVYIDEVDKIVKAESR--NNGRDVSGEGVQQALLKM 264
A+R IV+IDE+D + + G D + + Q L++M
Sbjct: 118 TAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEM 161
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 7/103 (6%)
Query: 166 VLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVE 225
V+L G G+GKTLLAK +A + F + L Q Y+G D + ++ A +
Sbjct: 219 VILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQK-YLG-DGPRLCRQIFKVAGENAP 276
Query: 226 AAQRGIVYIDEVDKI-VKAESRNNGRDVSGEGVQQALLKMLEG 267
+ IV+IDE+D I K N+G + + LL L+G
Sbjct: 277 S----IVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDG 315
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 45/102 (44%), Gaps = 9/102 (8%)
Query: 164 SNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFD 223
+ VLL GP G GKTLLAK +A + F L YVGE +V A +
Sbjct: 45 AGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM-YVGESERAVRQVFQRAKN-- 101
Query: 224 VEAAQRGIVYIDEVDKIVKAES-RNNGRDVSGEGVQQALLKM 264
+ +++ DEVD + S R G V V Q L +M
Sbjct: 102 ---SAPCVIFFDEVDALCPRRSDRETGASV--RVVNQLLTEM 138
>pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
pdb|1KAG|B Chain B, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
Length = 173
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAG 203
EK N+ L+GP G+GK+ + + LA+ +N+ F +D + G
Sbjct: 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG 44
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 9/81 (11%)
Query: 165 NVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDV 224
+++L GP G+GKT LA+ +AR N + +A+T V E E++ A +
Sbjct: 52 SMILWGPPGTGKTTLAEVIARYANA--DVERISAVTSG--VKEIREAI-----ERARQNR 102
Query: 225 EAAQRGIVYIDEVDKIVKAES 245
A +R I+++DEV + K++
Sbjct: 103 NAGRRTILFVDEVHRFNKSQQ 123
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 13/79 (16%)
Query: 164 SNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFD 223
++LL GP G GKT LA +A + V +T A+ + G D ++L L D
Sbjct: 39 EHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPG----DLAAILANSLEEGD-- 92
Query: 224 VEAAQRGIVYIDEVDKIVK 242
I++IDE+ ++ +
Sbjct: 93 -------ILFIDEIHRLSR 104
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 8/79 (10%)
Query: 166 VLLMGPTGSGKTLLAKTLARIVNVPF-TITDATALTQAGYVGEDAESVLYKLLAAADFDV 224
VL GP G GKTLLAK +A F +I LT + GE +E+ + ++ A
Sbjct: 52 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM--WFGE-SEANVREIFDKA---- 104
Query: 225 EAAQRGIVYIDEVDKIVKA 243
A +++ DE+D I KA
Sbjct: 105 RQAAPCVLFFDELDSIAKA 123
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 16/99 (16%)
Query: 163 KSNVLLMGPTGSGKTLLAKTLA-RIV--NVPFTITDATA--------LTQAGYVGEDAES 211
K+N LL+G +G GKT +A+ LA RIV +VP + D T L Y G D E
Sbjct: 207 KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRG-DFEK 265
Query: 212 VLYKLLAAADFDVEAAQRGIVYIDEVDKIVKAESRNNGR 250
LL + D + I++IDE+ I+ A + + G+
Sbjct: 266 RFKALLKQLEQDTNS----ILFIDEIHTIIGAGAASGGQ 300
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 13/79 (16%)
Query: 164 SNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFD 223
++LL GP G GKT LA +A + V +T A+ + G D ++L L D
Sbjct: 39 EHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPG----DLAAILANSLEEGD-- 92
Query: 224 VEAAQRGIVYIDEVDKIVK 242
I++IDE+ ++ +
Sbjct: 93 -------ILFIDEIHRLSR 104
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 13/79 (16%)
Query: 164 SNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFD 223
++LL GP G GKT LA +A + V +T A+ + G D ++L L D
Sbjct: 39 EHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPG----DLAAILANSLEEGD-- 92
Query: 224 VEAAQRGIVYIDEVDKIVK 242
I++IDE+ ++ +
Sbjct: 93 -------ILFIDEIHRLSR 104
>pdb|2VA8|A Chain A, Dna Repair Helicase Hel308
pdb|2VA8|B Chain B, Dna Repair Helicase Hel308
Length = 715
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 78/190 (41%), Gaps = 30/190 (15%)
Query: 161 LEKSNVLLMGPTGSGKTLLAKT-----LARIVNVPFTITDATALTQAGYVG-EDAESVLY 214
LE + +LL PTGSGKTL+A+ L + +T ALT Y+ +D E + +
Sbjct: 44 LEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFKDWELIGF 103
Query: 215 KL-LAAADFDVEAAQRGIVYIDEVDKIV----KAESRNNGRDVSGEGVQQALLKMLEGTV 269
K+ + + D+D + A ++ D I+ K +S R V +L L
Sbjct: 104 KVAMTSGDYDTDDA-----WLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYL- 157
Query: 270 VNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGFGAPVRANM 329
N P + P +++ I K + L TIS +Q + PV N
Sbjct: 158 -------NDPERGPVVESVTIRAKR------RNLLALSATISNYKQIAKWLGAEPVATNW 204
Query: 330 RTGGLTDALV 339
R L + ++
Sbjct: 205 RPVPLIEGVI 214
>pdb|3VAA|A Chain A, 1.7 Angstrom Resolution Crystal Structure Of Shikimate
Kinase From Bacteroides Thetaiotaomicron
pdb|3VAA|B Chain B, 1.7 Angstrom Resolution Crystal Structure Of Shikimate
Kinase From Bacteroides Thetaiotaomicron
pdb|3VAA|C Chain C, 1.7 Angstrom Resolution Crystal Structure Of Shikimate
Kinase From Bacteroides Thetaiotaomicron
Length = 199
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 166 VLLMGPTGSGKTLLAKTLARIVNVPFTITD 195
+ L G G+GKT L K AR +NVPF D
Sbjct: 28 IFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 16/80 (20%)
Query: 165 NVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDV 224
+VLL GP G GKT LA +A + +T L + G D ++L L
Sbjct: 53 HVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQG----DMAAILTSL-------- 100
Query: 225 EAAQRG-IVYIDEVDKIVKA 243
+RG +++IDE+ ++ KA
Sbjct: 101 ---ERGDVLFIDEIHRLNKA 117
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 16/80 (20%)
Query: 165 NVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDV 224
+VLL GP G GKT LA +A + +T L + G D ++L L
Sbjct: 53 HVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQG----DMAAILTSL-------- 100
Query: 225 EAAQRG-IVYIDEVDKIVKA 243
+RG +++IDE+ ++ KA
Sbjct: 101 ---ERGDVLFIDEIHRLNKA 117
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 16/80 (20%)
Query: 165 NVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDV 224
+VLL GP G GKT LA +A + +T L + G D ++L L
Sbjct: 53 HVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQG----DMAAILTSL-------- 100
Query: 225 EAAQRG-IVYIDEVDKIVKA 243
+RG +++IDE+ ++ KA
Sbjct: 101 ---ERGDVLFIDEIHRLNKA 117
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 16/80 (20%)
Query: 165 NVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDV 224
+VLL GP G GKT LA +A + +T L + G D ++L L
Sbjct: 53 HVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQG----DMAAILTSL-------- 100
Query: 225 EAAQRG-IVYIDEVDKIVKA 243
+RG +++IDE+ ++ KA
Sbjct: 101 ---ERGDVLFIDEIHRLNKA 117
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 16/80 (20%)
Query: 165 NVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDV 224
+VLL GP G GKT LA +A + +T L + G D ++L L
Sbjct: 53 HVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQG----DMAAILTSL-------- 100
Query: 225 EAAQRG-IVYIDEVDKIVKA 243
+RG +++IDE+ ++ KA
Sbjct: 101 ---ERGDVLFIDEIHRLNKA 117
>pdb|3FOZ|A Chain A, Structure Of E. Coli Isopentenyl-Trna Transferase In
Complex With E. Coli Trna(Phe)
pdb|3FOZ|B Chain B, Structure Of E. Coli Isopentenyl-Trna Transferase In
Complex With E. Coli Trna(Phe)
pdb|2ZXU|A Chain A, Crystal Structure Of Trna Modification Enzyme Miaa In The
Complex With Trna(Phe) And Dmaspp
pdb|2ZXU|B Chain B, Crystal Structure Of Trna Modification Enzyme Miaa In The
Complex With Trna(Phe) And Dmaspp
Length = 316
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 70/185 (37%), Gaps = 50/185 (27%)
Query: 166 VLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQA---GYVGEDAESVL---YKLL-- 217
+ LMGPT SGKT LA L +I+ V D+ + + G +AE +L ++LL
Sbjct: 13 IFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPHRLLDI 72
Query: 218 -------AAADF---------DVEAAQR-----------------GIVYIDEVDKIVKAE 244
+AADF D+ AA R G+ + D V+A
Sbjct: 73 RDPSQAYSAADFRRDALAEMADITAAGRIPLLVGGTMLYFKALLEGLSPLPSADPEVRAR 132
Query: 245 SRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFV 304
+ E + + L ++ V I N P++ R ++ FI G
Sbjct: 133 IEQQAAEQGWESLHRQLQEV--DPVAAARIHPNDPQRLSRA-------LEVFFISGKTLT 183
Query: 305 GLEKT 309
L +T
Sbjct: 184 ELTQT 188
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 16/80 (20%)
Query: 165 NVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDV 224
+VLL GP G G+T LA +A + +T L + G D ++L L
Sbjct: 53 HVLLAGPPGLGRTTLAHIIASELQTNIHVTSGPVLVKQG----DMAAILTSL-------- 100
Query: 225 EAAQRG-IVYIDEVDKIVKA 243
+RG +++IDE+ ++ KA
Sbjct: 101 ---ERGDVLFIDEIHRLNKA 117
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/20 (70%), Positives = 16/20 (80%)
Query: 165 NVLLMGPTGSGKTLLAKTLA 184
+ L +GPTG GKT LAKTLA
Sbjct: 590 SFLFLGPTGVGKTELAKTLA 609
>pdb|4FCV|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|F Chain F, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 311
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/20 (70%), Positives = 16/20 (80%)
Query: 165 NVLLMGPTGSGKTLLAKTLA 184
+ L +GPTG GKT LAKTLA
Sbjct: 49 SFLFLGPTGVGKTELAKTLA 68
>pdb|4FCT|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|D Chain D, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 308
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/20 (70%), Positives = 16/20 (80%)
Query: 165 NVLLMGPTGSGKTLLAKTLA 184
+ L +GPTG GKT LAKTLA
Sbjct: 46 SFLFLGPTGVGKTELAKTLA 65
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 359 PEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKK 418
PEFI R ++ +L + L +++ + + Q K ++ + TD A +A++
Sbjct: 647 PEFINRIDEIIVFHSLEKKHLTEIV----SLMSDQLTKRLKEQDLSIELTDAAKAKVAEE 702
Query: 419 AMAKNTGARGLRALLENILTEAMFE 443
+ GAR LR ++ + + + E
Sbjct: 703 GVDLEYGARPLRRAIQKHVEDRLSE 727
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 19/86 (22%)
Query: 125 SSLQKELVSDHLYV------DSILGSGVKSGNCNVENDE-----IVELEKSN------VL 167
S+ + + ++ H +V +S L SG EN IVEL KS VL
Sbjct: 22 STTKTQRIASHSHVKGLGLDESGLAKQAASGLVGQENAREACGVIVELIKSKKXAGRAVL 81
Query: 168 LMGPTGSGKTLLAKTLARIV--NVPF 191
L GP G+GKT LA +A+ + VPF
Sbjct: 82 LAGPPGTGKTALALAIAQELGSKVPF 107
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 19/86 (22%)
Query: 125 SSLQKELVSDHLYV------DSILGSGVKSGNCNVENDE-----IVELEKSN------VL 167
S+ + + ++ H +V +S L SG EN IVEL KS VL
Sbjct: 8 STTKTQRIASHSHVKGLGLDESGLAKQAASGLVGQENAREACGVIVELIKSKKMAGRAVL 67
Query: 168 LMGPTGSGKTLLAKTLARIV--NVPF 191
L GP G+GKT LA +A+ + VPF
Sbjct: 68 LAGPPGTGKTALALAIAQELGSKVPF 93
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 160 ELEKSNVL-LMGPTGSGKTLLAKTLARIVNVPF---TITDATALTQAGYVGEDAESVLYK 215
E++K V+ ++GP G GKT K LA V P D T + Y+ D E +Y+
Sbjct: 308 EIKKGEVIGIVGPNGIGKTTFVKXLAG-VEEPTEGKIEWDLTVAYKPQYIKADYEGTVYE 366
Query: 216 LLAAAD 221
LL+ D
Sbjct: 367 LLSKID 372
>pdb|2ZM5|A Chain A, Crystal Structure Of Trna Modification Enzyme Miaa In The
Complex With Trna(Phe)
pdb|2ZM5|B Chain B, Crystal Structure Of Trna Modification Enzyme Miaa In The
Complex With Trna(Phe)
Length = 316
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 70/185 (37%), Gaps = 50/185 (27%)
Query: 166 VLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVG---EDAESVL---YKLL-- 217
+ L GPT SGKT LA L +I+ V D+ + + +G +AE +L ++LL
Sbjct: 13 IFLXGPTASGKTALAIELRKILPVELISVDSALIYKGXDIGTAKPNAEELLAAPHRLLDI 72
Query: 218 -------AAADF---------DVEAAQR-----------------GIVYIDEVDKIVKAE 244
+AADF D+ AA R G+ + D V+A
Sbjct: 73 RDPSQAYSAADFRRDALAEXADITAAGRIPLLVGGTXLYFKALLEGLSPLPSADPEVRAR 132
Query: 245 SRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFV 304
+ E + + L ++ V I N P++ R ++ FI G
Sbjct: 133 IEQQAAEQGWESLHRQLQEV--DPVAAARIHPNDPQRLSRA-------LEVFFISGKTLT 183
Query: 305 GLEKT 309
L +T
Sbjct: 184 ELTQT 188
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 165 NVLLMGPTGSGKTLLAKTLARIVNVPF 191
+VLL GP SGKT LA +A N PF
Sbjct: 65 SVLLEGPPHSGKTALAAKIAEESNFPF 91
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 165 NVLLMGPTGSGKTLLAKTLARIVNVPF 191
+VLL GP SGKT LA +A N PF
Sbjct: 66 SVLLEGPPHSGKTALAAKIAEESNFPF 92
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 160 ELEKSNVL-LMGPTGSGKTLLAKTLARIVNVPF---TITDATALTQAGYVGEDAESVLYK 215
E+ K V+ ++GP G GKT K LA V P D T + Y+ + E +Y+
Sbjct: 378 EIRKGEVIGIVGPNGIGKTTFVKMLAG-VEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYE 436
Query: 216 LLAAAD 221
LL+ D
Sbjct: 437 LLSKID 442
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 160 ELEKSNVL-LMGPTGSGKTLLAKTLARIVNVPF---TITDATALTQAGYVGEDAESVLYK 215
E+ K V+ ++GP G GKT K LA V P D T + Y+ + E +Y+
Sbjct: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAG-VEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYE 422
Query: 216 LLAAAD 221
LL+ D
Sbjct: 423 LLSKID 428
>pdb|4B2I|A Chain A, Humanised Monomeric Rada In Complex With Indazole
pdb|4B2L|A Chain A, Humanised Monomeric Rada In Complex With L-methylester
Tryptophan
pdb|4B32|A Chain A, Humanised Monomeric Rada In Complex With Napht-1-ol
pdb|4B33|A Chain A, Humanised Monomeric Rada In Complex With Napht-2-ol
pdb|4B34|A Chain A, Humanised Monomeric Rada In Complex With 2-amino
Benzothiazole
pdb|4B35|A Chain A, Humanised Monomeric Rada In Complex With 4-methylester
Indole
pdb|4B3C|A Chain A, Humanised Monomeric Rada In Complex With 5-hydroxy Indole
pdb|4B3D|A Chain A, Humanised Monomeric Rada In Complex With 5-methyl Indole
pdb|4B3D|C Chain C, Humanised Monomeric Rada In Complex With 5-methyl Indole
pdb|4B3B|A Chain A, Humanised Monomeric Rada In Complex With Fhta Tetrapeptide
Length = 231
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 14/53 (26%)
Query: 138 VDSILGSGVKSGNCNVENDEIVELEKSNVLLMGPTGSGKTLLAKTLARIVNVP 190
+D +LG G+ E I E+ G GSGKT LA TLA +V +P
Sbjct: 14 LDKLLGGGI-------ETQAITEV-------FGEFGSGKTQLAHTLAVMVQLP 52
>pdb|4A6P|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
pdb|4A6X|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Atp
pdb|4A6X|B Chain B, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Atp
pdb|4A74|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Amppnp
pdb|4A74|B Chain B, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Amppnp
pdb|4A7O|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Adp
Length = 231
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 14/53 (26%)
Query: 138 VDSILGSGVKSGNCNVENDEIVELEKSNVLLMGPTGSGKTLLAKTLARIVNVP 190
+D +LG G+ E I E+ G GSGKT LA TLA +V +P
Sbjct: 14 LDKLLGGGI-------ETQAITEV-------FGEFGSGKTQLAHTLAVMVQLP 52
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 166 VLLMGPTGSGKTLLAKTLARIVNV 189
V L+GPTGSGKT + L R +V
Sbjct: 384 VALVGPTGSGKTTIVNLLMRFYDV 407
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,287,692
Number of Sequences: 62578
Number of extensions: 585052
Number of successful extensions: 1757
Number of sequences better than 100.0: 93
Number of HSP's better than 100.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1636
Number of HSP's gapped (non-prelim): 123
length of query: 510
length of database: 14,973,337
effective HSP length: 103
effective length of query: 407
effective length of database: 8,527,803
effective search space: 3470815821
effective search space used: 3470815821
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)