Query 038067
Match_columns 510
No_of_seqs 369 out of 4050
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 07:15:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038067.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038067hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0745 Putative ATP-dependent 100.0 7.9E-78 1.7E-82 608.0 32.0 453 2-494 78-557 (564)
2 COG1219 ClpX ATP-dependent pro 100.0 1.1E-73 2.4E-78 560.0 27.7 347 70-471 47-394 (408)
3 TIGR00382 clpX endopeptidase C 100.0 2.5E-55 5.4E-60 459.3 30.2 347 70-470 63-410 (413)
4 PRK05342 clpX ATP-dependent pr 100.0 3.4E-55 7.4E-60 460.4 31.0 345 72-470 59-404 (412)
5 TIGR00390 hslU ATP-dependent p 100.0 8.8E-47 1.9E-51 390.0 24.7 283 74-465 2-424 (441)
6 PRK05201 hslU ATP-dependent pr 100.0 2.7E-46 5.9E-51 386.6 24.6 284 73-465 4-426 (443)
7 COG1220 HslU ATP-dependent pro 100.0 1.1E-42 2.3E-47 344.0 20.4 285 73-466 4-428 (444)
8 COG0542 clpA ATP-binding subun 100.0 8.2E-39 1.8E-43 351.3 19.1 284 53-445 458-759 (786)
9 PRK11034 clpA ATP-dependent Cl 100.0 4.3E-33 9.3E-38 311.7 22.8 280 53-444 425-719 (758)
10 CHL00095 clpC Clp protease ATP 100.0 1E-31 2.2E-36 306.4 24.1 294 52-445 475-786 (821)
11 TIGR02639 ClpA ATP-dependent C 100.0 2.3E-31 5E-36 300.3 21.9 279 55-445 423-716 (731)
12 TIGR03345 VI_ClpV1 type VI sec 100.0 1.6E-30 3.5E-35 295.8 22.1 284 53-444 533-834 (852)
13 TIGR03346 chaperone_ClpB ATP-d 100.0 4.2E-28 9E-33 277.6 23.6 282 52-445 531-830 (852)
14 PRK10865 protein disaggregatio 100.0 3.9E-28 8.5E-33 277.1 22.8 281 53-445 535-833 (857)
15 KOG1051 Chaperone HSP104 and r 99.9 1.1E-26 2.5E-31 258.7 18.4 295 50-446 526-839 (898)
16 PF07724 AAA_2: AAA domain (Cd 99.9 5.9E-25 1.3E-29 205.8 9.1 166 162-368 2-171 (171)
17 COG0466 Lon ATP-dependent Lon 99.9 4.7E-23 1E-27 221.8 19.4 248 71-448 310-565 (782)
18 PRK10787 DNA-binding ATP-depen 99.9 2.1E-22 4.5E-27 227.4 23.2 244 71-445 309-560 (784)
19 TIGR00763 lon ATP-dependent pr 99.9 3.8E-22 8.2E-27 226.8 22.5 253 64-446 297-560 (775)
20 KOG2004 Mitochondrial ATP-depe 99.9 2.9E-22 6.3E-27 214.5 16.7 209 162-448 437-653 (906)
21 PF05496 RuvB_N: Holliday junc 99.9 1.6E-21 3.6E-26 187.0 17.5 177 162-436 49-225 (233)
22 TIGR02880 cbbX_cfxQ probable R 99.9 2.4E-21 5.1E-26 195.8 19.3 239 71-447 9-260 (284)
23 CHL00181 cbbX CbbX; Provisiona 99.9 3.6E-21 7.8E-26 194.6 20.1 192 162-447 58-261 (287)
24 COG1223 Predicted ATPase (AAA+ 99.9 8.1E-22 1.8E-26 190.0 12.9 188 162-443 150-338 (368)
25 TIGR02881 spore_V_K stage V sp 99.9 1E-20 2.2E-25 189.0 18.7 192 162-448 41-246 (261)
26 KOG0730 AAA+-type ATPase [Post 99.8 6.7E-21 1.5E-25 203.6 14.3 189 162-446 467-658 (693)
27 COG1222 RPT1 ATP-dependent 26S 99.8 7.3E-20 1.6E-24 184.0 13.8 148 162-385 184-333 (406)
28 KOG0738 AAA+-type ATPase [Post 99.8 2.3E-19 5E-24 181.5 15.8 191 162-443 244-435 (491)
29 COG2204 AtoC Response regulato 99.8 2.8E-19 6E-24 188.7 14.8 202 162-440 163-374 (464)
30 COG3604 FhlA Transcriptional r 99.8 2.8E-19 6.1E-24 186.4 13.5 211 157-446 240-461 (550)
31 COG3829 RocR Transcriptional r 99.8 4.7E-19 1E-23 186.9 14.4 200 161-438 266-477 (560)
32 KOG0733 Nuclear AAA ATPase (VC 99.8 1.5E-18 3.4E-23 183.4 15.9 190 162-441 544-734 (802)
33 KOG0734 AAA+-type ATPase conta 99.8 1.4E-18 3.1E-23 181.2 14.8 190 162-444 336-525 (752)
34 COG2255 RuvB Holliday junction 99.8 2.9E-18 6.3E-23 167.8 15.4 179 162-438 51-229 (332)
35 COG2256 MGS1 ATPase related to 99.8 2.4E-18 5.2E-23 175.6 15.1 171 162-437 47-217 (436)
36 CHL00195 ycf46 Ycf46; Provisio 99.8 1.2E-17 2.6E-22 179.6 18.9 187 162-442 258-446 (489)
37 KOG0731 AAA+-type ATPase conta 99.8 1.1E-17 2.4E-22 183.9 15.9 149 162-385 343-493 (774)
38 TIGR02974 phageshock_pspF psp 99.7 2.1E-17 4.4E-22 170.4 16.1 200 162-439 21-232 (329)
39 KOG0736 Peroxisome assembly fa 99.7 1E-17 2.2E-22 181.2 13.7 100 162-267 704-803 (953)
40 TIGR01243 CDC48 AAA family ATP 99.7 4.1E-17 8.8E-22 185.1 18.3 190 162-445 486-677 (733)
41 TIGR03689 pup_AAA proteasome A 99.7 4.5E-17 9.8E-22 175.2 16.4 152 162-387 215-378 (512)
42 TIGR01241 FtsH_fam ATP-depende 99.7 1.3E-16 2.9E-21 173.2 19.6 147 162-385 87-236 (495)
43 PLN00020 ribulose bisphosphate 99.7 1E-16 2.2E-21 163.7 16.5 177 162-418 147-327 (413)
44 COG0464 SpoVK ATPases of the A 99.7 1.4E-16 3E-21 173.2 18.6 190 162-444 275-466 (494)
45 KOG0733 Nuclear AAA ATPase (VC 99.7 3.6E-17 7.9E-22 173.1 13.4 149 162-385 222-372 (802)
46 KOG0739 AAA+-type ATPase [Post 99.7 8.7E-17 1.9E-21 158.0 13.4 98 162-267 165-262 (439)
47 TIGR01817 nifA Nif-specific re 99.7 1.5E-16 3.3E-21 174.3 14.9 199 162-438 218-426 (534)
48 PTZ00454 26S protease regulato 99.7 5.1E-16 1.1E-20 163.5 17.9 186 162-443 178-369 (398)
49 PRK11608 pspF phage shock prot 99.7 2.7E-16 5.9E-21 162.0 15.5 200 162-439 28-239 (326)
50 PRK03992 proteasome-activating 99.7 6.6E-16 1.4E-20 162.8 17.8 190 162-443 164-355 (389)
51 PRK05022 anaerobic nitric oxid 99.7 6.2E-16 1.3E-20 168.5 17.5 203 161-440 208-420 (509)
52 CHL00176 ftsH cell division pr 99.7 7.1E-16 1.5E-20 170.8 17.8 186 162-440 215-403 (638)
53 PRK00080 ruvB Holliday junctio 99.7 2E-15 4.4E-20 155.7 19.5 182 162-441 50-231 (328)
54 KOG0727 26S proteasome regulat 99.7 5.9E-16 1.3E-20 149.1 13.0 114 162-302 188-302 (408)
55 PF01078 Mg_chelatase: Magnesi 99.7 9E-17 1.9E-21 153.3 6.5 166 162-378 21-206 (206)
56 COG1221 PspF Transcriptional r 99.7 9.8E-16 2.1E-20 159.4 14.6 203 162-443 100-312 (403)
57 TIGR00635 ruvB Holliday juncti 99.7 4.2E-15 9.1E-20 151.4 18.2 178 162-437 29-206 (305)
58 PRK15424 propionate catabolism 99.6 2.4E-15 5.3E-20 163.4 17.0 197 162-438 241-463 (538)
59 TIGR02329 propionate_PrpR prop 99.6 3E-15 6.5E-20 162.7 16.4 199 161-439 233-449 (526)
60 KOG0728 26S proteasome regulat 99.6 7.7E-16 1.7E-20 148.2 10.4 150 162-385 180-329 (404)
61 PTZ00361 26 proteosome regulat 99.6 3.2E-15 6.9E-20 158.8 15.9 189 162-443 216-407 (438)
62 PRK14956 DNA polymerase III su 99.6 4.1E-15 8.9E-20 158.2 16.0 163 164-437 41-227 (484)
63 PRK10820 DNA-binding transcrip 99.6 5.1E-15 1.1E-19 161.6 16.9 199 162-439 226-436 (520)
64 TIGR02902 spore_lonB ATP-depen 99.6 3.7E-15 8E-20 162.8 14.9 197 162-441 85-313 (531)
65 KOG0735 AAA+-type ATPase [Post 99.6 3.3E-15 7.1E-20 160.6 13.0 187 162-443 700-888 (952)
66 KOG2028 ATPase related to the 99.6 4.4E-15 9.5E-20 149.5 13.1 176 164-438 163-342 (554)
67 PRK15429 formate hydrogenlyase 99.6 1.6E-14 3.4E-19 163.0 19.0 201 161-439 397-608 (686)
68 PRK11388 DNA-binding transcrip 99.6 1.4E-14 2.9E-19 162.3 17.7 196 162-438 347-552 (638)
69 COG0465 HflB ATP-dependent Zn 99.6 6.4E-15 1.4E-19 159.6 13.9 100 162-267 182-282 (596)
70 TIGR01242 26Sp45 26S proteasom 99.6 2.1E-14 4.5E-19 150.2 17.0 190 162-443 155-346 (364)
71 KOG0744 AAA+-type ATPase [Post 99.6 7.1E-15 1.5E-19 146.1 11.7 155 164-392 178-345 (423)
72 CHL00206 ycf2 Ycf2; Provisiona 99.6 1.3E-14 2.8E-19 170.2 15.7 189 161-442 1628-1859(2281)
73 PRK14962 DNA polymerase III su 99.6 2.3E-14 5E-19 154.1 15.9 165 163-438 36-224 (472)
74 PRK10733 hflB ATP-dependent me 99.6 5.4E-14 1.2E-18 157.0 19.4 147 162-385 184-333 (644)
75 PRK07003 DNA polymerase III su 99.6 2.2E-14 4.7E-19 158.2 15.7 163 164-437 39-225 (830)
76 PF00004 AAA: ATPase family as 99.6 1.3E-14 2.9E-19 128.1 11.2 94 166-267 1-95 (132)
77 COG0606 Predicted ATPase with 99.6 5.9E-15 1.3E-19 154.3 10.2 166 162-379 197-384 (490)
78 PRK14960 DNA polymerase III su 99.6 3.4E-14 7.3E-19 155.2 16.0 165 163-438 37-225 (702)
79 KOG0737 AAA+-type ATPase [Post 99.6 2.7E-14 5.8E-19 144.8 14.0 193 162-447 126-318 (386)
80 PRK13342 recombination factor 99.6 8.5E-14 1.9E-18 148.0 18.3 167 163-438 36-202 (413)
81 TIGR00368 Mg chelatase-related 99.6 6.8E-14 1.5E-18 151.2 17.7 235 162-448 210-485 (499)
82 PRK14949 DNA polymerase III su 99.6 6.6E-14 1.4E-18 157.0 16.7 171 164-437 39-225 (944)
83 PRK12323 DNA polymerase III su 99.6 4.4E-14 9.5E-19 154.0 14.9 170 164-437 39-230 (700)
84 KOG0726 26S proteasome regulat 99.6 6.6E-15 1.4E-19 144.5 7.6 97 162-266 218-314 (440)
85 TIGR02640 gas_vesic_GvpN gas v 99.5 3.4E-13 7.3E-18 135.0 19.6 158 162-385 20-196 (262)
86 PRK14958 DNA polymerase III su 99.5 7.3E-14 1.6E-18 151.6 15.0 164 163-437 38-225 (509)
87 TIGR02915 PEP_resp_reg putativ 99.5 8.3E-14 1.8E-18 149.2 15.2 200 162-438 161-370 (445)
88 PF00158 Sigma54_activat: Sigm 99.5 8.3E-15 1.8E-19 136.9 6.4 122 162-310 21-149 (168)
89 KOG0742 AAA+-type ATPase [Post 99.5 9.9E-14 2.2E-18 141.4 14.6 194 162-437 383-589 (630)
90 TIGR01650 PD_CobS cobaltochela 99.5 7.7E-14 1.7E-18 142.1 13.7 162 162-385 63-231 (327)
91 PLN03025 replication factor C 99.5 5.4E-14 1.2E-18 144.6 12.7 161 164-435 35-203 (319)
92 KOG0989 Replication factor C, 99.5 5.2E-14 1.1E-18 139.5 11.7 169 163-435 57-233 (346)
93 PRK11361 acetoacetate metaboli 99.5 1.9E-14 4.1E-19 154.6 9.3 200 161-438 164-374 (457)
94 PRK10923 glnG nitrogen regulat 99.5 7.5E-14 1.6E-18 150.6 13.9 201 161-439 159-370 (469)
95 KOG0729 26S proteasome regulat 99.5 2.8E-14 6E-19 138.6 9.3 97 162-266 210-306 (435)
96 PRK14961 DNA polymerase III su 99.5 1.9E-13 4.1E-18 143.0 15.9 171 164-437 39-225 (363)
97 PRK07994 DNA polymerase III su 99.5 2E-13 4.4E-18 150.6 16.4 163 164-437 39-225 (647)
98 PRK13341 recombination factor 99.5 2.2E-13 4.8E-18 152.9 17.0 170 164-438 53-223 (725)
99 KOG0740 AAA+-type ATPase [Post 99.5 1.6E-13 3.5E-18 143.3 14.3 193 162-446 185-377 (428)
100 KOG0652 26S proteasome regulat 99.5 6.1E-14 1.3E-18 135.9 10.1 96 162-266 204-300 (424)
101 TIGR02639 ClpA ATP-dependent C 99.5 3.1E-13 6.8E-18 153.3 17.4 169 162-419 202-381 (731)
102 COG0714 MoxR-like ATPases [Gen 99.5 1.1E-13 2.4E-18 142.9 12.4 145 74-294 14-162 (329)
103 PRK14957 DNA polymerase III su 99.5 3.5E-13 7.5E-18 146.7 16.4 164 164-438 39-226 (546)
104 PRK14964 DNA polymerase III su 99.5 2.8E-13 6E-18 145.5 15.3 166 162-438 34-223 (491)
105 PRK06645 DNA polymerase III su 99.5 3.7E-13 8.1E-18 145.5 16.3 173 163-438 43-235 (507)
106 PRK07764 DNA polymerase III su 99.5 2.9E-13 6.2E-18 153.7 15.9 163 164-437 38-226 (824)
107 PRK08691 DNA polymerase III su 99.5 3E-13 6.5E-18 149.0 15.4 172 163-438 38-226 (709)
108 CHL00081 chlI Mg-protoporyphyr 99.5 3.3E-13 7.2E-18 139.3 14.6 207 163-442 38-304 (350)
109 KOG0651 26S proteasome regulat 99.5 1.4E-13 3.1E-18 136.4 10.8 97 162-266 165-261 (388)
110 KOG0741 AAA+-type ATPase [Post 99.5 1.2E-13 2.7E-18 144.6 10.0 203 162-447 255-462 (744)
111 PRK14952 DNA polymerase III su 99.5 5.5E-13 1.2E-17 146.3 15.6 164 164-438 36-225 (584)
112 TIGR01818 ntrC nitrogen regula 99.5 4.6E-13 1E-17 144.1 14.9 201 162-439 156-366 (463)
113 TIGR02442 Cob-chelat-sub cobal 99.5 7.2E-13 1.6E-17 147.9 16.3 197 164-433 26-277 (633)
114 PRK13407 bchI magnesium chelat 99.5 4.8E-13 1E-17 137.8 13.8 203 164-442 30-288 (334)
115 PRK14959 DNA polymerase III su 99.5 7.1E-13 1.5E-17 145.3 15.8 164 163-437 38-225 (624)
116 TIGR01243 CDC48 AAA family ATP 99.5 9.6E-13 2.1E-17 149.5 17.5 186 162-442 211-398 (733)
117 smart00350 MCM minichromosome 99.5 7.3E-13 1.6E-17 144.4 15.0 216 162-446 235-488 (509)
118 TIGR02030 BchI-ChlI magnesium 99.5 6.1E-13 1.3E-17 137.2 13.4 205 163-442 25-291 (337)
119 TIGR03345 VI_ClpV1 type VI sec 99.5 1.3E-12 2.8E-17 149.7 17.4 169 162-419 207-386 (852)
120 PRK14951 DNA polymerase III su 99.4 8.4E-13 1.8E-17 145.4 14.8 163 164-437 39-230 (618)
121 PRK15115 response regulator Gl 99.4 4.6E-13 9.9E-18 143.5 12.5 199 162-438 156-365 (444)
122 PRK13531 regulatory ATPase Rav 99.4 1.8E-12 4E-17 137.8 16.6 232 75-442 11-266 (498)
123 TIGR02903 spore_lon_C ATP-depe 99.4 1.7E-12 3.7E-17 144.2 17.0 196 162-440 174-402 (615)
124 PRK05563 DNA polymerase III su 99.4 1.3E-12 2.8E-17 143.6 15.3 165 163-438 38-226 (559)
125 PRK14963 DNA polymerase III su 99.4 2.1E-12 4.5E-17 140.0 15.8 164 164-438 37-223 (504)
126 PRK14969 DNA polymerase III su 99.4 1.5E-12 3.2E-17 142.2 14.0 172 164-438 39-226 (527)
127 PHA02244 ATPase-like protein 99.4 9.5E-12 2.1E-16 128.3 18.7 184 162-417 118-305 (383)
128 COG3283 TyrR Transcriptional r 99.4 3.5E-12 7.7E-17 128.5 15.0 195 162-438 226-430 (511)
129 PRK14965 DNA polymerase III su 99.4 2.2E-12 4.8E-17 142.4 14.9 165 163-438 38-226 (576)
130 PRK05896 DNA polymerase III su 99.4 3.5E-12 7.6E-17 139.2 15.9 164 163-437 38-225 (605)
131 PRK12402 replication factor C 99.4 4.4E-12 9.6E-17 130.5 15.4 171 164-437 37-231 (337)
132 PRK05642 DNA replication initi 99.4 4.2E-12 9.1E-17 125.0 14.2 168 164-442 46-218 (234)
133 PF07728 AAA_5: AAA domain (dy 99.4 1.1E-13 2.5E-18 124.5 2.9 121 165-302 1-122 (139)
134 PRK07133 DNA polymerase III su 99.4 5.2E-12 1.1E-16 140.5 16.5 172 163-437 40-224 (725)
135 PRK06305 DNA polymerase III su 99.4 7.3E-12 1.6E-16 134.4 16.9 164 163-437 39-227 (451)
136 TIGR03420 DnaA_homol_Hda DnaA 99.4 2.8E-12 6.1E-17 124.6 12.6 166 162-438 37-207 (226)
137 PHA02544 44 clamp loader, smal 99.4 1.5E-11 3.2E-16 126.0 18.2 170 164-436 44-213 (316)
138 PRK08451 DNA polymerase III su 99.4 5.8E-12 1.3E-16 136.6 15.4 165 163-438 36-224 (535)
139 PRK14955 DNA polymerase III su 99.4 4.9E-12 1.1E-16 133.9 14.5 172 163-437 38-233 (397)
140 PRK08084 DNA replication initi 99.4 4.6E-12 1E-16 124.8 13.3 65 357-437 148-214 (235)
141 PRK06647 DNA polymerase III su 99.4 6.4E-12 1.4E-16 137.9 15.6 172 163-437 38-225 (563)
142 PRK04195 replication factor C 99.4 8.2E-12 1.8E-16 135.4 16.2 165 162-435 38-205 (482)
143 PRK06893 DNA replication initi 99.4 4.9E-12 1.1E-16 124.1 12.7 164 164-437 40-208 (229)
144 PRK14970 DNA polymerase III su 99.4 1.1E-11 2.3E-16 129.9 16.0 171 162-438 38-215 (367)
145 PRK11034 clpA ATP-dependent Cl 99.4 1.9E-11 4.2E-16 138.0 18.7 169 162-419 206-385 (758)
146 TIGR00362 DnaA chromosomal rep 99.4 7.2E-12 1.6E-16 133.0 14.4 176 164-441 137-319 (405)
147 TIGR02397 dnaX_nterm DNA polym 99.4 1.1E-11 2.3E-16 128.8 15.3 165 163-438 36-224 (355)
148 COG2812 DnaX DNA polymerase II 99.4 3.5E-12 7.7E-17 136.9 11.7 172 164-438 39-226 (515)
149 CHL00095 clpC Clp protease ATP 99.4 1.7E-11 3.7E-16 140.7 18.1 168 162-419 199-377 (821)
150 PRK09111 DNA polymerase III su 99.4 1.2E-11 2.5E-16 136.5 15.8 171 162-438 45-239 (598)
151 PRK10365 transcriptional regul 99.3 5.9E-12 1.3E-16 134.6 12.8 201 161-438 160-370 (441)
152 PRK10865 protein disaggregatio 99.3 1.3E-11 2.8E-16 141.9 16.2 144 162-385 198-352 (857)
153 PF00308 Bac_DnaA: Bacterial d 99.3 8.3E-12 1.8E-16 121.7 12.6 175 164-440 35-216 (219)
154 PRK14948 DNA polymerase III su 99.3 1.4E-11 3E-16 136.7 15.7 169 164-436 39-226 (620)
155 PRK09862 putative ATP-dependen 99.3 1.7E-11 3.7E-16 132.3 16.0 231 162-448 209-478 (506)
156 PRK07940 DNA polymerase III su 99.3 1.4E-11 2.9E-16 129.9 14.7 133 163-384 36-186 (394)
157 PRK00411 cdc6 cell division co 99.3 4.3E-11 9.4E-16 126.2 18.5 187 162-441 54-263 (394)
158 TIGR02928 orc1/cdc6 family rep 99.3 2.8E-11 6E-16 126.3 16.8 190 162-442 39-256 (365)
159 PRK14953 DNA polymerase III su 99.3 1.6E-11 3.5E-16 132.8 15.4 170 164-437 39-225 (486)
160 COG3284 AcoR Transcriptional a 99.3 6.3E-12 1.4E-16 135.5 12.0 199 157-437 330-537 (606)
161 PRK14954 DNA polymerase III su 99.3 2.1E-11 4.5E-16 134.8 16.4 173 163-438 38-234 (620)
162 PTZ00111 DNA replication licen 99.3 1E-11 2.2E-16 140.0 14.0 97 162-280 491-594 (915)
163 PRK00149 dnaA chromosomal repl 99.3 1E-11 2.2E-16 133.6 13.3 176 164-441 149-331 (450)
164 PRK14950 DNA polymerase III su 99.3 2.6E-11 5.6E-16 134.3 15.8 164 164-438 39-227 (585)
165 PRK08903 DnaA regulatory inact 99.3 1.8E-11 3.8E-16 119.6 12.7 162 162-440 41-207 (227)
166 KOG0730 AAA+-type ATPase [Post 99.3 2.1E-11 4.5E-16 131.5 14.2 163 162-418 217-381 (693)
167 PTZ00112 origin recognition co 99.3 3.5E-11 7.7E-16 133.8 16.2 179 165-438 783-987 (1164)
168 PRK08727 hypothetical protein; 99.3 1.6E-11 3.4E-16 120.8 12.2 168 164-442 42-214 (233)
169 TIGR03346 chaperone_ClpB ATP-d 99.3 3.1E-11 6.7E-16 139.1 16.4 169 162-419 193-372 (852)
170 KOG2170 ATPase of the AAA+ sup 99.3 1.5E-11 3.3E-16 121.8 11.4 234 74-418 72-318 (344)
171 PRK14971 DNA polymerase III su 99.3 3.6E-11 7.8E-16 133.4 15.6 164 163-437 39-227 (614)
172 PF07726 AAA_3: ATPase family 99.3 6.6E-13 1.4E-17 117.3 1.5 92 165-272 1-93 (131)
173 COG1224 TIP49 DNA helicase TIP 99.3 4.7E-11 1E-15 120.6 14.8 61 355-434 343-403 (450)
174 TIGR02031 BchD-ChlD magnesium 99.3 3.7E-11 8E-16 133.0 15.5 191 163-424 16-221 (589)
175 PF05673 DUF815: Protein of un 99.3 1.6E-11 3.5E-16 119.8 10.6 152 162-385 51-205 (249)
176 PRK00440 rfc replication facto 99.3 4.9E-11 1.1E-15 121.7 14.5 165 164-437 39-208 (319)
177 PRK14086 dnaA chromosomal repl 99.3 2.3E-11 5.1E-16 132.9 12.4 175 165-441 316-497 (617)
178 PRK12422 chromosomal replicati 99.3 2.8E-11 6.1E-16 129.6 12.2 173 164-438 142-319 (445)
179 PF06068 TIP49: TIP49 C-termin 99.2 3E-11 6.6E-16 123.6 11.0 39 162-200 49-89 (398)
180 TIGR00764 lon_rel lon-related 99.2 6.3E-11 1.4E-15 131.4 13.6 138 226-436 215-367 (608)
181 KOG0743 AAA+-type ATPase [Post 99.2 9.5E-11 2.1E-15 122.1 13.4 141 164-387 236-383 (457)
182 PRK14088 dnaA chromosomal repl 99.2 1.1E-10 2.5E-15 125.0 13.2 177 164-441 131-314 (440)
183 PRK14087 dnaA chromosomal repl 99.2 1.2E-10 2.5E-15 125.1 12.5 179 164-442 142-329 (450)
184 TIGR00678 holB DNA polymerase 99.2 3.7E-10 8.1E-15 107.1 14.4 145 162-419 13-181 (188)
185 PRK09112 DNA polymerase III su 99.2 6.7E-10 1.4E-14 115.6 17.5 59 357-434 184-242 (351)
186 KOG0732 AAA+-type ATPase conta 99.2 1.4E-10 3.1E-15 131.5 13.4 188 162-443 298-492 (1080)
187 KOG0991 Replication factor C, 99.1 1.3E-10 2.7E-15 111.5 8.6 166 164-437 49-219 (333)
188 COG1474 CDC6 Cdc6-related prot 99.1 1.3E-09 2.8E-14 113.9 15.6 188 162-443 41-248 (366)
189 PRK13765 ATP-dependent proteas 99.1 2.5E-10 5.4E-15 126.6 10.7 35 225-272 223-257 (637)
190 COG1239 ChlI Mg-chelatase subu 99.1 7.4E-10 1.6E-14 114.9 13.2 187 162-421 37-282 (423)
191 PRK06620 hypothetical protein; 99.1 1.5E-09 3.3E-14 105.5 13.7 63 359-437 130-194 (214)
192 PRK13406 bchD magnesium chelat 99.1 1.2E-09 2.5E-14 120.4 14.0 192 164-432 26-222 (584)
193 PRK07471 DNA polymerase III su 99.1 3.1E-09 6.8E-14 111.1 16.4 26 162-187 40-65 (365)
194 cd00009 AAA The AAA+ (ATPases 99.1 1.5E-09 3.2E-14 96.0 11.2 88 162-266 18-109 (151)
195 PRK04132 replication factor C 99.0 1.1E-09 2.3E-14 124.3 12.6 165 162-437 563-736 (846)
196 PRK09087 hypothetical protein; 99.0 1.4E-09 3E-14 106.6 11.6 70 357-442 134-205 (226)
197 KOG1942 DNA helicase, TBP-inte 99.0 6.9E-09 1.5E-13 102.6 15.7 61 355-434 349-409 (456)
198 COG2607 Predicted ATPase (AAA+ 99.0 2E-09 4.2E-14 104.0 11.4 150 162-385 84-237 (287)
199 KOG1969 DNA replication checkp 99.0 2.3E-09 5E-14 116.7 13.0 94 156-266 319-412 (877)
200 COG0542 clpA ATP-binding subun 99.0 5.6E-09 1.2E-13 116.6 16.2 169 162-419 190-369 (786)
201 COG1241 MCM2 Predicted ATPase 99.0 1.4E-09 3E-14 120.2 11.3 217 162-440 318-572 (682)
202 TIGR03015 pepcterm_ATPase puta 99.0 2E-08 4.2E-13 100.2 17.8 72 360-443 178-249 (269)
203 PRK07399 DNA polymerase III su 99.0 1.2E-08 2.5E-13 104.8 15.7 26 162-187 25-50 (314)
204 smart00763 AAA_PrkA PrkA AAA d 99.0 9.4E-09 2E-13 106.2 14.6 35 162-196 77-118 (361)
205 COG4650 RtcR Sigma54-dependent 99.0 3.8E-09 8.2E-14 104.5 10.7 200 161-436 206-422 (531)
206 PF14532 Sigma54_activ_2: Sigm 98.9 5.9E-10 1.3E-14 100.6 4.5 72 162-266 20-94 (138)
207 COG0470 HolB ATPase involved i 98.9 6E-09 1.3E-13 106.5 11.9 85 165-266 26-134 (325)
208 PRK08058 DNA polymerase III su 98.9 5.1E-09 1.1E-13 108.3 10.7 137 162-385 27-180 (329)
209 PF00493 MCM: MCM2/3/5 family 98.9 9E-10 1.9E-14 113.9 4.6 117 162-302 56-172 (331)
210 PRK05564 DNA polymerase III su 98.9 2.4E-08 5.2E-13 102.5 15.1 130 162-385 25-163 (313)
211 KOG0735 AAA+-type ATPase [Post 98.9 2.1E-08 4.7E-13 108.9 14.4 194 161-443 429-627 (952)
212 KOG0480 DNA replication licens 98.9 1.6E-08 3.4E-13 108.8 12.7 213 162-445 377-626 (764)
213 PRK05707 DNA polymerase III su 98.8 2.4E-08 5.2E-13 103.1 11.6 137 162-385 21-176 (328)
214 PF13177 DNA_pol3_delta2: DNA 98.8 1.6E-08 3.4E-13 94.1 8.9 88 162-267 18-128 (162)
215 PRK11331 5-methylcytosine-spec 98.8 7.1E-08 1.5E-12 102.3 14.7 123 162-303 193-334 (459)
216 COG0593 DnaA ATPase involved i 98.8 7E-08 1.5E-12 101.3 13.5 177 163-443 113-297 (408)
217 KOG0478 DNA replication licens 98.7 2.2E-08 4.8E-13 108.5 8.5 98 162-278 461-561 (804)
218 COG5271 MDN1 AAA ATPase contai 98.7 1.8E-07 4E-12 108.2 13.9 149 162-387 887-1047(4600)
219 PRK06871 DNA polymerase III su 98.7 2.1E-07 4.7E-12 95.7 12.8 137 162-385 23-177 (325)
220 PRK07993 DNA polymerase III su 98.7 3.7E-07 8E-12 94.5 14.2 137 162-385 23-178 (334)
221 TIGR00602 rad24 checkpoint pro 98.6 3.3E-07 7.2E-12 101.8 14.3 71 357-438 256-329 (637)
222 KOG2035 Replication factor C, 98.6 3E-07 6.6E-12 90.6 11.2 165 164-434 35-227 (351)
223 PRK06964 DNA polymerase III su 98.6 3.1E-07 6.6E-12 95.2 11.8 137 162-385 20-202 (342)
224 PF13173 AAA_14: AAA domain 98.6 1.9E-07 4.2E-12 83.1 8.9 70 164-241 3-74 (128)
225 KOG0741 AAA+-type ATPase [Post 98.6 8.7E-07 1.9E-11 93.9 14.6 97 162-266 537-633 (744)
226 PRK08769 DNA polymerase III su 98.6 5.6E-07 1.2E-11 92.4 13.0 137 162-385 25-183 (319)
227 COG5271 MDN1 AAA ATPase contai 98.6 2.7E-07 5.9E-12 106.9 11.3 156 162-387 1542-1703(4600)
228 smart00382 AAA ATPases associa 98.6 1.3E-07 2.8E-12 82.5 7.1 77 163-243 2-93 (148)
229 PRK08116 hypothetical protein; 98.5 2.8E-07 6E-12 92.7 8.0 86 164-267 115-206 (268)
230 KOG1514 Origin recognition com 98.5 9.5E-07 2E-11 96.5 12.4 188 164-444 423-632 (767)
231 PF06309 Torsin: Torsin; Inte 98.5 7.2E-07 1.6E-11 78.9 9.0 64 73-187 14-77 (127)
232 KOG2227 Pre-initiation complex 98.5 1.9E-06 4.1E-11 90.5 13.4 185 162-440 174-379 (529)
233 PRK12377 putative replication 98.5 4.2E-07 9.2E-12 90.2 8.3 85 164-268 102-192 (248)
234 KOG0736 Peroxisome assembly fa 98.5 4.9E-07 1.1E-11 99.4 9.4 146 163-387 431-576 (953)
235 PRK06090 DNA polymerase III su 98.5 1.8E-06 3.8E-11 88.8 13.0 136 162-385 24-178 (319)
236 KOG2680 DNA helicase TIP49, TB 98.5 2.8E-06 6.2E-11 84.6 13.6 39 162-200 65-105 (454)
237 PRK08699 DNA polymerase III su 98.4 1.1E-06 2.5E-11 90.6 10.9 91 162-266 20-138 (325)
238 PF10431 ClpB_D2-small: C-term 98.4 5.7E-07 1.2E-11 73.7 6.8 68 374-445 1-68 (81)
239 PRK08181 transposase; Validate 98.4 3.7E-07 8E-12 91.7 6.2 87 162-266 105-194 (269)
240 PF13401 AAA_22: AAA domain; P 98.4 8.1E-07 1.7E-11 78.4 6.6 89 162-266 3-113 (131)
241 PRK06526 transposase; Provisio 98.3 3.4E-07 7.5E-12 91.2 4.4 87 162-266 97-186 (254)
242 KOG0990 Replication factor C, 98.3 1E-06 2.2E-11 88.6 6.9 166 164-437 63-237 (360)
243 PF05621 TniB: Bacterial TniB 98.3 3.5E-05 7.6E-10 77.9 17.5 77 162-241 60-158 (302)
244 PF01695 IstB_IS21: IstB-like 98.3 5.3E-07 1.1E-11 85.2 4.1 85 162-267 46-136 (178)
245 PF01637 Arch_ATPase: Archaeal 98.3 6.7E-06 1.4E-10 79.2 11.0 49 358-419 176-224 (234)
246 KOG0477 DNA replication licens 98.2 4.3E-07 9.4E-12 97.6 1.8 94 162-272 481-577 (854)
247 KOG0481 DNA replication licens 98.2 5.8E-07 1.3E-11 94.8 2.0 103 162-281 363-466 (729)
248 PF00910 RNA_helicase: RNA hel 98.2 5.8E-06 1.3E-10 71.4 7.9 85 166-273 1-85 (107)
249 PRK07952 DNA replication prote 98.2 4.6E-06 1E-10 82.6 7.8 85 164-267 100-190 (244)
250 PRK05917 DNA polymerase III su 98.2 1.2E-05 2.7E-10 81.3 10.7 92 162-267 18-121 (290)
251 PF03215 Rad17: Rad17 cell cyc 98.1 3.4E-05 7.4E-10 84.3 14.5 32 163-194 45-76 (519)
252 PF12775 AAA_7: P-loop contain 98.1 2.6E-06 5.5E-11 85.9 5.1 150 162-386 32-192 (272)
253 PRK09183 transposase/IS protei 98.1 4.2E-06 9.1E-11 83.7 6.3 88 162-266 101-191 (259)
254 PRK06835 DNA replication prote 98.1 2E-06 4.4E-11 88.8 3.9 86 163-267 183-274 (329)
255 COG1484 DnaC DNA replication p 98.0 7.6E-06 1.6E-10 81.7 6.7 71 162-241 104-180 (254)
256 PRK08939 primosomal protein Dn 98.0 1.1E-05 2.4E-10 82.7 6.6 69 163-241 156-230 (306)
257 PRK06921 hypothetical protein; 98.0 1.6E-05 3.5E-10 79.8 7.6 37 163-199 117-157 (266)
258 KOG0479 DNA replication licens 97.9 3.4E-05 7.4E-10 82.8 8.7 114 162-295 333-450 (818)
259 PRK07132 DNA polymerase III su 97.9 8.6E-05 1.9E-09 75.8 10.8 84 163-267 18-116 (299)
260 KOG0482 DNA replication licens 97.9 5.9E-06 1.3E-10 87.3 2.3 89 162-273 374-471 (721)
261 PF12774 AAA_6: Hydrolytic ATP 97.8 3.7E-05 8E-10 75.6 6.8 67 164-243 33-99 (231)
262 KOG1808 AAA ATPase containing 97.8 1.1E-05 2.4E-10 97.1 3.5 116 162-295 439-560 (1856)
263 PRK05818 DNA polymerase III su 97.8 0.00019 4.2E-09 71.4 11.3 93 162-267 6-114 (261)
264 PRK07276 DNA polymerase III su 97.8 0.00021 4.4E-09 72.6 11.6 91 162-267 23-130 (290)
265 PF13207 AAA_17: AAA domain; P 97.7 2.7E-05 5.9E-10 67.8 4.0 31 166-196 2-32 (121)
266 PF05729 NACHT: NACHT domain 97.7 0.00043 9.4E-09 63.0 12.1 23 165-187 2-24 (166)
267 TIGR02688 conserved hypothetic 97.7 0.00083 1.8E-08 71.1 15.5 106 162-304 208-313 (449)
268 PRK00131 aroK shikimate kinase 97.6 7E-05 1.5E-09 69.2 4.5 34 162-195 3-36 (175)
269 cd01120 RecA-like_NTPases RecA 97.6 0.00018 3.9E-09 65.0 6.8 34 165-198 1-37 (165)
270 PF07693 KAP_NTPase: KAP famil 97.5 0.0018 3.9E-08 66.3 14.5 37 162-198 19-61 (325)
271 PRK08118 topology modulation p 97.5 9.7E-05 2.1E-09 69.0 4.1 33 165-197 3-35 (167)
272 PRK13947 shikimate kinase; Pro 97.5 0.00011 2.4E-09 68.2 4.2 32 165-196 3-34 (171)
273 PHA00729 NTP-binding motif con 97.5 0.0002 4.4E-09 69.9 6.1 25 164-188 18-42 (226)
274 PF10923 DUF2791: P-loop Domai 97.4 0.019 4.1E-07 61.1 21.0 161 228-447 239-403 (416)
275 PRK00625 shikimate kinase; Pro 97.4 0.00013 2.8E-09 68.6 4.3 32 165-196 2-33 (173)
276 COG0703 AroK Shikimate kinase 97.4 0.00011 2.4E-09 68.6 3.6 33 164-196 3-35 (172)
277 PRK07261 topology modulation p 97.4 0.00034 7.4E-09 65.5 6.9 43 165-208 2-44 (171)
278 PRK03839 putative kinase; Prov 97.4 0.00015 3.2E-09 68.2 4.2 31 165-195 2-32 (180)
279 COG3854 SpoIIIAA ncharacterize 97.4 0.0005 1.1E-08 66.7 7.4 80 162-241 136-231 (308)
280 PF03969 AFG1_ATPase: AFG1-lik 97.4 0.00021 4.6E-09 74.8 5.4 27 162-188 61-87 (362)
281 PF03266 NTPase_1: NTPase; In 97.4 0.00029 6.3E-09 65.9 5.7 23 165-187 1-23 (168)
282 cd00464 SK Shikimate kinase (S 97.3 0.00019 4.1E-09 65.1 4.2 31 165-195 1-31 (154)
283 cd01128 rho_factor Transcripti 97.3 0.00059 1.3E-08 67.9 7.6 28 162-189 15-42 (249)
284 PRK13948 shikimate kinase; Pro 97.3 0.00026 5.6E-09 67.2 4.6 34 162-195 9-42 (182)
285 COG3267 ExeA Type II secretory 97.3 0.0099 2.1E-07 58.7 15.6 68 360-444 186-253 (269)
286 KOG3347 Predicted nucleotide k 97.3 0.0002 4.4E-09 64.9 3.5 37 162-200 6-42 (176)
287 KOG1970 Checkpoint RAD17-RFC c 97.3 0.0056 1.2E-07 66.1 14.7 34 162-195 109-142 (634)
288 PRK06217 hypothetical protein; 97.3 0.00025 5.4E-09 67.0 4.2 32 165-196 3-34 (183)
289 PRK13949 shikimate kinase; Pro 97.2 0.00026 5.6E-09 66.2 3.9 33 164-196 2-34 (169)
290 PF08298 AAA_PrkA: PrkA AAA do 97.2 0.0034 7.3E-08 65.0 12.2 26 162-187 87-112 (358)
291 PRK14532 adenylate kinase; Pro 97.2 0.00029 6.2E-09 66.6 4.0 29 165-193 2-30 (188)
292 COG1618 Predicted nucleotide k 97.2 0.0017 3.6E-08 59.9 8.5 26 162-187 4-29 (179)
293 TIGR01618 phage_P_loop phage n 97.2 0.00058 1.3E-08 66.6 5.9 23 162-184 11-33 (220)
294 PF01583 APS_kinase: Adenylyls 97.2 0.0011 2.4E-08 61.2 7.3 37 164-200 3-42 (156)
295 PRK14530 adenylate kinase; Pro 97.2 0.00038 8.3E-09 67.4 4.5 31 164-194 4-34 (215)
296 PHA02774 E1; Provisional 97.2 0.0024 5.2E-08 70.0 11.0 78 163-273 434-512 (613)
297 PF13671 AAA_33: AAA domain; P 97.2 0.00023 4.9E-09 63.7 2.7 31 166-198 2-32 (143)
298 PRK13946 shikimate kinase; Pro 97.2 0.00035 7.7E-09 66.1 4.0 35 162-196 9-43 (184)
299 PRK06762 hypothetical protein; 97.2 0.00068 1.5E-08 62.7 5.6 37 164-200 3-39 (166)
300 PRK09376 rho transcription ter 97.1 0.0011 2.5E-08 69.5 7.8 82 162-244 168-272 (416)
301 PRK14531 adenylate kinase; Pro 97.1 0.00046 1E-08 65.2 4.5 30 164-193 3-32 (183)
302 PRK15455 PrkA family serine pr 97.1 0.00045 9.8E-09 75.5 4.9 35 162-196 102-137 (644)
303 PRK03731 aroL shikimate kinase 97.1 0.00049 1.1E-08 63.9 4.4 33 164-196 3-35 (171)
304 PRK05480 uridine/cytidine kina 97.1 0.0051 1.1E-07 59.2 11.5 38 162-199 5-43 (209)
305 COG1373 Predicted ATPase (AAA+ 97.1 0.0029 6.3E-08 67.3 10.7 69 165-241 39-107 (398)
306 PRK05057 aroK shikimate kinase 97.1 0.00051 1.1E-08 64.4 4.4 34 163-196 4-37 (172)
307 COG0464 SpoVK ATPases of the A 97.1 0.00098 2.1E-08 72.8 7.1 97 162-267 17-113 (494)
308 cd01124 KaiC KaiC is a circadi 97.1 0.0028 6.1E-08 59.3 9.3 32 166-197 2-36 (187)
309 TIGR01359 UMP_CMP_kin_fam UMP- 97.1 0.00048 1E-08 64.6 3.9 33 166-200 2-34 (183)
310 cd02020 CMPK Cytidine monophos 97.1 0.00051 1.1E-08 61.6 3.9 30 166-195 2-31 (147)
311 cd00227 CPT Chloramphenicol (C 97.1 0.00049 1.1E-08 64.4 3.8 36 164-199 3-38 (175)
312 cd01428 ADK Adenylate kinase ( 97.0 0.00051 1.1E-08 64.8 3.8 30 165-194 1-30 (194)
313 KOG2543 Origin recognition com 97.0 0.0054 1.2E-07 63.6 11.2 38 162-199 29-66 (438)
314 cd02021 GntK Gluconate kinase 97.0 0.00055 1.2E-08 62.1 3.7 28 166-193 2-29 (150)
315 PTZ00088 adenylate kinase 1; P 97.0 0.00064 1.4E-08 66.9 4.3 33 163-195 6-38 (229)
316 TIGR00767 rho transcription te 97.0 0.0017 3.8E-08 68.4 7.7 27 162-188 167-193 (415)
317 PRK14974 cell division protein 97.0 0.0026 5.6E-08 66.0 9.0 38 162-199 139-179 (336)
318 TIGR01313 therm_gnt_kin carboh 97.0 0.00054 1.2E-08 63.1 3.3 27 166-192 1-27 (163)
319 PRK10536 hypothetical protein; 97.0 0.0086 1.9E-07 59.7 11.8 23 164-186 75-97 (262)
320 COG0529 CysC Adenylylsulfate k 97.0 0.0029 6.2E-08 59.2 7.7 74 162-235 22-100 (197)
321 PF13604 AAA_30: AAA domain; P 97.0 0.0033 7.1E-08 60.2 8.5 89 164-266 19-118 (196)
322 PRK08154 anaerobic benzoate ca 97.0 0.0012 2.5E-08 67.9 5.7 34 162-195 132-165 (309)
323 cd02027 APSK Adenosine 5'-phos 96.9 0.003 6.5E-08 57.7 7.8 35 166-200 2-39 (149)
324 TIGR02237 recomb_radB DNA repa 96.9 0.002 4.3E-08 61.9 6.8 37 162-198 11-50 (209)
325 PHA02624 large T antigen; Prov 96.9 0.0014 3E-08 72.1 6.2 89 162-272 430-521 (647)
326 PRK06547 hypothetical protein; 96.9 0.00089 1.9E-08 62.9 4.1 34 162-195 14-47 (172)
327 PRK14528 adenylate kinase; Pro 96.9 0.00093 2E-08 63.4 4.2 30 164-193 2-31 (186)
328 COG1102 Cmk Cytidylate kinase 96.9 0.00094 2E-08 61.5 3.6 29 165-193 2-30 (179)
329 PRK04296 thymidine kinase; Pro 96.9 0.0051 1.1E-07 58.6 8.8 31 165-195 4-37 (190)
330 COG0563 Adk Adenylate kinase a 96.8 0.0011 2.4E-08 62.6 4.2 33 165-199 2-34 (178)
331 COG1116 TauB ABC-type nitrate/ 96.8 0.0048 1E-07 60.8 8.5 26 162-187 28-53 (248)
332 PTZ00301 uridine kinase; Provi 96.8 0.0051 1.1E-07 59.7 8.7 23 165-187 5-27 (210)
333 TIGR00235 udk uridine kinase. 96.8 0.0073 1.6E-07 58.1 9.7 27 162-188 5-31 (207)
334 PRK06067 flagellar accessory p 96.8 0.0065 1.4E-07 59.5 9.4 36 162-197 24-62 (234)
335 PRK02496 adk adenylate kinase; 96.8 0.0013 2.7E-08 62.0 4.1 30 165-194 3-32 (184)
336 PF14516 AAA_35: AAA-like doma 96.8 0.034 7.3E-07 57.7 15.0 39 162-200 30-71 (331)
337 TIGR01360 aden_kin_iso1 adenyl 96.7 0.0014 3.1E-08 61.3 4.1 29 164-192 4-32 (188)
338 PF00448 SRP54: SRP54-type pro 96.7 0.0058 1.3E-07 58.7 8.2 37 163-199 1-40 (196)
339 TIGR01351 adk adenylate kinase 96.7 0.0013 2.9E-08 63.4 3.8 29 166-194 2-30 (210)
340 PRK00771 signal recognition pa 96.7 0.0059 1.3E-07 65.6 9.0 39 162-200 94-135 (437)
341 PF13238 AAA_18: AAA domain; P 96.7 0.0013 2.9E-08 57.2 3.4 22 166-187 1-22 (129)
342 cd01131 PilT Pilus retraction 96.7 0.0037 8E-08 59.9 6.7 25 164-188 2-26 (198)
343 PLN02200 adenylate kinase fami 96.7 0.0016 3.5E-08 64.2 4.3 37 162-200 42-78 (234)
344 PLN02199 shikimate kinase 96.7 0.0017 3.6E-08 65.9 4.4 35 162-196 101-135 (303)
345 COG0572 Udk Uridine kinase [Nu 96.7 0.013 2.8E-07 56.9 10.3 27 164-190 9-35 (218)
346 COG1936 Predicted nucleotide k 96.7 0.0013 2.9E-08 61.2 3.3 30 165-195 2-31 (180)
347 PRK00279 adk adenylate kinase; 96.7 0.0018 4E-08 62.7 4.3 29 165-193 2-30 (215)
348 PRK05537 bifunctional sulfate 96.7 0.0079 1.7E-07 66.8 9.7 38 162-199 391-432 (568)
349 PF13521 AAA_28: AAA domain; P 96.6 0.0033 7.2E-08 57.9 5.8 34 166-200 2-35 (163)
350 cd02019 NK Nucleoside/nucleoti 96.6 0.0036 7.7E-08 49.5 4.7 31 166-196 2-33 (69)
351 PRK04040 adenylate kinase; Pro 96.6 0.0023 5E-08 61.0 4.2 24 164-187 3-26 (188)
352 TIGR03574 selen_PSTK L-seryl-t 96.6 0.0048 1E-07 61.2 6.6 34 166-199 2-38 (249)
353 PRK09361 radB DNA repair and r 96.6 0.0086 1.9E-07 58.2 8.3 36 162-197 22-60 (225)
354 TIGR01425 SRP54_euk signal rec 96.6 0.018 3.9E-07 61.6 11.2 39 162-200 99-140 (429)
355 PRK14527 adenylate kinase; Pro 96.5 0.002 4.3E-08 61.2 3.6 31 162-192 5-35 (191)
356 PF13245 AAA_19: Part of AAA d 96.5 0.0041 8.9E-08 50.3 4.8 24 164-187 11-35 (76)
357 PHA01747 putative ATP-dependen 96.5 0.0068 1.5E-07 62.8 7.4 88 162-271 189-276 (425)
358 PF01745 IPT: Isopentenyl tran 96.5 0.0025 5.4E-08 61.5 4.0 35 165-199 3-37 (233)
359 PRK04182 cytidylate kinase; Pr 96.5 0.0026 5.6E-08 59.1 4.0 29 165-193 2-30 (180)
360 PRK10078 ribose 1,5-bisphospho 96.5 0.0023 5E-08 60.5 3.7 29 164-192 3-31 (186)
361 PLN02674 adenylate kinase 96.5 0.0028 6E-08 62.9 4.2 36 162-199 30-65 (244)
362 PRK06696 uridine kinase; Valid 96.4 0.0039 8.4E-08 60.8 4.8 39 162-200 21-62 (223)
363 TIGR01526 nadR_NMN_Atrans nico 96.4 0.0067 1.5E-07 62.8 6.7 38 163-200 162-199 (325)
364 PF00406 ADK: Adenylate kinase 96.4 0.0024 5.3E-08 58.1 3.1 31 168-200 1-31 (151)
365 cd01121 Sms Sms (bacterial rad 96.4 0.0064 1.4E-07 64.0 6.5 77 162-242 81-172 (372)
366 PRK14722 flhF flagellar biosyn 96.4 0.012 2.7E-07 61.8 8.6 38 162-199 136-178 (374)
367 PRK14526 adenylate kinase; Pro 96.4 0.0034 7.4E-08 60.9 4.1 33 165-199 2-34 (211)
368 PRK05541 adenylylsulfate kinas 96.4 0.0043 9.3E-08 58.0 4.7 38 162-199 6-46 (176)
369 PRK08233 hypothetical protein; 96.4 0.0038 8.2E-08 58.1 4.3 34 164-197 4-38 (182)
370 KOG0058 Peptide exporter, ABC 96.4 0.0089 1.9E-07 66.6 7.7 40 161-200 492-533 (716)
371 cd03284 ABC_MutS1 MutS1 homolo 96.4 0.014 3E-07 56.9 8.3 22 164-185 31-52 (216)
372 PRK05800 cobU adenosylcobinami 96.4 0.0086 1.9E-07 56.1 6.6 33 165-197 3-35 (170)
373 cd03115 SRP The signal recogni 96.3 0.011 2.4E-07 55.0 7.3 35 165-199 2-39 (173)
374 TIGR02173 cyt_kin_arch cytidyl 96.3 0.0035 7.5E-08 57.8 3.9 30 165-194 2-31 (171)
375 KOG1968 Replication factor C, 96.3 0.0072 1.6E-07 69.7 7.1 91 165-266 359-456 (871)
376 PHA02530 pseT polynucleotide k 96.3 0.0033 7.1E-08 63.9 4.0 30 164-193 3-33 (300)
377 PRK01184 hypothetical protein; 96.3 0.0035 7.6E-08 58.9 3.8 29 165-194 3-31 (184)
378 PLN02165 adenylate isopentenyl 96.3 0.0036 7.8E-08 64.6 4.0 36 162-197 42-77 (334)
379 PRK12723 flagellar biosynthesi 96.3 0.014 3E-07 61.8 8.5 38 162-199 173-217 (388)
380 TIGR02012 tigrfam_recA protein 96.3 0.014 3.1E-07 60.2 8.3 81 162-242 54-147 (321)
381 TIGR00455 apsK adenylylsulfate 96.3 0.014 3E-07 55.0 7.7 39 162-200 17-58 (184)
382 PRK04220 2-phosphoglycerate ki 96.3 0.0054 1.2E-07 62.5 5.1 30 162-191 91-120 (301)
383 PF08433 KTI12: Chromatin asso 96.3 0.011 2.3E-07 59.7 7.2 75 166-241 4-83 (270)
384 COG4178 ABC-type uncharacteriz 96.3 0.027 5.9E-07 62.3 10.8 26 162-187 418-443 (604)
385 TIGR01420 pilT_fam pilus retra 96.2 0.01 2.3E-07 61.8 7.0 27 162-188 121-147 (343)
386 PRK12608 transcription termina 96.2 0.012 2.5E-07 61.8 7.3 104 163-266 133-264 (380)
387 PF13191 AAA_16: AAA ATPase do 96.2 0.0028 6E-08 58.9 2.5 38 162-199 23-63 (185)
388 PRK00889 adenylylsulfate kinas 96.2 0.0061 1.3E-07 56.9 4.8 38 162-199 3-43 (175)
389 cd01130 VirB11-like_ATPase Typ 96.2 0.014 3.1E-07 55.2 7.4 26 162-187 24-49 (186)
390 PRK14529 adenylate kinase; Pro 96.2 0.0041 9E-08 60.9 3.7 28 165-192 2-29 (223)
391 COG1125 OpuBA ABC-type proline 96.2 0.016 3.5E-07 57.4 7.7 39 162-200 26-66 (309)
392 PLN02459 probable adenylate ki 96.2 0.0051 1.1E-07 61.5 4.4 29 164-192 30-58 (261)
393 KOG3354 Gluconate kinase [Carb 96.2 0.0042 9.2E-08 56.8 3.4 34 162-195 11-44 (191)
394 PRK00091 miaA tRNA delta(2)-is 96.2 0.0051 1.1E-07 63.1 4.4 36 163-198 4-39 (307)
395 PRK11889 flhF flagellar biosyn 96.1 0.029 6.4E-07 59.3 9.8 38 162-199 240-280 (436)
396 PRK03846 adenylylsulfate kinas 96.1 0.023 4.9E-07 54.3 8.4 38 162-199 23-63 (198)
397 TIGR00150 HI0065_YjeE ATPase, 96.1 0.0062 1.3E-07 54.8 4.1 29 162-190 21-49 (133)
398 TIGR03499 FlhF flagellar biosy 96.1 0.019 4.1E-07 58.2 8.0 38 162-199 193-235 (282)
399 cd01123 Rad51_DMC1_radA Rad51_ 96.1 0.032 7E-07 54.4 9.3 37 162-198 18-63 (235)
400 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.1 0.023 4.9E-07 51.6 7.6 74 162-241 25-101 (144)
401 PRK11823 DNA repair protein Ra 96.0 0.015 3.3E-07 62.8 7.4 77 162-242 79-170 (446)
402 PLN02318 phosphoribulokinase/u 96.0 0.055 1.2E-06 59.8 11.7 25 163-187 65-89 (656)
403 PF06048 DUF927: Domain of unk 96.0 0.034 7.3E-07 56.5 9.5 78 162-267 192-269 (286)
404 PF12780 AAA_8: P-loop contain 96.0 0.017 3.6E-07 58.2 7.2 87 162-268 30-116 (268)
405 KOG1051 Chaperone HSP104 and r 96.0 0.021 4.6E-07 65.7 8.7 96 162-266 207-313 (898)
406 PRK14021 bifunctional shikimat 96.0 0.0077 1.7E-07 66.7 5.1 34 163-196 6-39 (542)
407 cd01129 PulE-GspE PulE/GspE Th 96.0 0.0094 2E-07 59.9 5.3 27 162-188 79-105 (264)
408 TIGR02322 phosphon_PhnN phosph 95.9 0.0065 1.4E-07 56.8 3.5 24 165-188 3-26 (179)
409 PF13479 AAA_24: AAA domain 95.9 0.011 2.5E-07 57.2 5.2 21 163-183 3-23 (213)
410 PRK13808 adenylate kinase; Pro 95.9 0.0077 1.7E-07 62.3 4.1 30 165-194 2-31 (333)
411 cd03216 ABC_Carb_Monos_I This 95.9 0.031 6.8E-07 51.7 7.8 26 162-187 25-50 (163)
412 PRK12339 2-phosphoglycerate ki 95.9 0.0096 2.1E-07 57.2 4.4 29 163-191 3-31 (197)
413 COG1485 Predicted ATPase [Gene 95.9 0.018 4E-07 59.3 6.6 26 162-187 64-89 (367)
414 cd02028 UMPK_like Uridine mono 95.8 0.01 2.3E-07 55.9 4.5 35 166-200 2-39 (179)
415 PRK10867 signal recognition pa 95.8 0.032 6.9E-07 59.9 8.7 39 162-200 99-141 (433)
416 PRK09825 idnK D-gluconate kina 95.8 0.0086 1.9E-07 56.4 3.8 28 163-190 3-30 (176)
417 cd02022 DPCK Dephospho-coenzym 95.8 0.0094 2E-07 56.1 4.0 29 166-195 2-30 (179)
418 cd03281 ABC_MSH5_euk MutS5 hom 95.8 0.019 4.2E-07 55.7 6.2 22 164-185 30-51 (213)
419 cd03222 ABC_RNaseL_inhibitor T 95.8 0.039 8.5E-07 52.1 8.1 26 162-187 24-49 (177)
420 TIGR00064 ftsY signal recognit 95.8 0.02 4.4E-07 57.8 6.4 38 162-199 71-111 (272)
421 cd02023 UMPK Uridine monophosp 95.7 0.013 2.8E-07 55.8 4.7 34 166-199 2-36 (198)
422 PRK13764 ATPase; Provisional 95.7 0.018 4E-07 64.0 6.5 28 161-188 255-282 (602)
423 PRK09354 recA recombinase A; P 95.7 0.022 4.9E-07 59.3 6.8 81 162-242 59-152 (349)
424 PF00437 T2SE: Type II/IV secr 95.7 0.0049 1.1E-07 61.7 1.9 74 162-239 126-208 (270)
425 cd00544 CobU Adenosylcobinamid 95.7 0.037 8.1E-07 51.8 7.7 32 166-197 2-33 (169)
426 PF05272 VirE: Virulence-assoc 95.7 0.03 6.5E-07 53.8 7.1 96 164-302 53-148 (198)
427 PRK10416 signal recognition pa 95.7 0.028 6.2E-07 58.0 7.4 37 162-198 113-152 (318)
428 cd00983 recA RecA is a bacter 95.7 0.037 8E-07 57.2 8.2 81 162-242 54-147 (325)
429 PRK06581 DNA polymerase III su 95.7 0.12 2.5E-06 51.2 11.1 88 164-267 16-115 (263)
430 TIGR03878 thermo_KaiC_2 KaiC d 95.7 0.037 8.1E-07 55.3 8.0 36 162-197 35-73 (259)
431 PRK13951 bifunctional shikimat 95.7 0.0098 2.1E-07 64.9 4.1 32 165-196 2-33 (488)
432 PF09848 DUF2075: Uncharacteri 95.7 0.028 6E-07 58.8 7.3 24 164-187 2-25 (352)
433 cd00071 GMPK Guanosine monopho 95.7 0.01 2.2E-07 53.5 3.5 25 166-190 2-26 (137)
434 cd01394 radB RadB. The archaea 95.7 0.014 3.1E-07 56.4 4.7 36 162-197 18-56 (218)
435 PF13086 AAA_11: AAA domain; P 95.6 0.011 2.4E-07 56.7 3.9 22 166-187 20-41 (236)
436 cd00267 ABC_ATPase ABC (ATP-bi 95.6 0.045 9.7E-07 50.1 7.8 27 162-188 24-50 (157)
437 TIGR00174 miaA tRNA isopenteny 95.6 0.012 2.5E-07 59.8 4.2 34 166-199 2-35 (287)
438 PLN02840 tRNA dimethylallyltra 95.6 0.013 2.7E-07 62.5 4.6 37 162-198 20-56 (421)
439 PRK08356 hypothetical protein; 95.6 0.012 2.7E-07 56.0 4.1 32 164-198 6-37 (195)
440 PF00485 PRK: Phosphoribulokin 95.6 0.01 2.2E-07 56.5 3.5 23 166-188 2-24 (194)
441 PRK00300 gmk guanylate kinase; 95.6 0.01 2.2E-07 56.7 3.5 27 162-188 4-30 (205)
442 PRK14730 coaE dephospho-CoA ki 95.6 0.012 2.6E-07 56.4 3.9 33 165-199 3-35 (195)
443 PRK07667 uridine kinase; Provi 95.6 0.017 3.6E-07 55.1 4.9 36 164-199 18-56 (193)
444 TIGR02788 VirB11 P-type DNA tr 95.6 0.023 5E-07 58.3 6.2 26 162-187 143-168 (308)
445 COG4608 AppF ABC-type oligopep 95.6 0.052 1.1E-06 54.2 8.4 27 162-188 38-64 (268)
446 PRK11545 gntK gluconate kinase 95.6 0.0086 1.9E-07 55.6 2.7 26 169-194 1-26 (163)
447 cd03280 ABC_MutS2 MutS2 homolo 95.6 0.022 4.9E-07 54.5 5.7 21 164-184 29-49 (200)
448 cd02024 NRK1 Nicotinamide ribo 95.6 0.011 2.4E-07 56.2 3.6 22 166-187 2-23 (187)
449 PRK12338 hypothetical protein; 95.6 0.012 2.7E-07 60.4 4.1 29 163-191 4-32 (319)
450 COG4088 Predicted nucleotide k 95.5 0.0092 2E-07 57.3 2.8 22 166-187 4-25 (261)
451 TIGR02858 spore_III_AA stage I 95.5 0.016 3.5E-07 58.4 4.8 24 164-187 112-135 (270)
452 PF06745 KaiC: KaiC; InterPro 95.5 0.043 9.3E-07 53.4 7.6 37 162-198 18-58 (226)
453 PRK14737 gmk guanylate kinase; 95.5 0.012 2.5E-07 56.1 3.4 26 162-187 3-28 (186)
454 PLN02796 D-glycerate 3-kinase 95.5 0.22 4.7E-06 51.9 12.9 27 162-188 99-125 (347)
455 cd03287 ABC_MSH3_euk MutS3 hom 95.5 0.088 1.9E-06 51.5 9.6 23 163-185 31-53 (222)
456 TIGR03263 guanyl_kin guanylate 95.5 0.01 2.2E-07 55.4 3.0 25 165-189 3-27 (180)
457 cd03243 ABC_MutS_homologs The 95.5 0.032 6.9E-07 53.5 6.4 22 164-185 30-51 (202)
458 TIGR00017 cmk cytidylate kinas 95.5 0.015 3.3E-07 56.7 4.2 29 164-192 3-31 (217)
459 PRK13975 thymidylate kinase; P 95.4 0.018 3.9E-07 54.5 4.4 27 164-190 3-29 (196)
460 COG2804 PulE Type II secretory 95.4 0.046 9.9E-07 59.0 7.7 71 162-240 257-339 (500)
461 COG0324 MiaA tRNA delta(2)-iso 95.4 0.017 3.8E-07 58.9 4.4 37 163-199 3-39 (308)
462 PRK05986 cob(I)alamin adenolsy 95.4 0.2 4.3E-06 47.8 11.2 26 162-187 21-46 (191)
463 TIGR03880 KaiC_arch_3 KaiC dom 95.3 0.064 1.4E-06 52.1 8.2 37 162-198 15-54 (224)
464 PF06414 Zeta_toxin: Zeta toxi 95.3 0.019 4E-07 55.0 4.3 40 162-201 14-54 (199)
465 cd01393 recA_like RecA is a b 95.3 0.049 1.1E-06 52.7 7.4 37 162-198 18-63 (226)
466 KOG0055 Multidrug/pheromone ex 95.3 0.091 2E-06 62.2 10.6 39 162-200 1015-1055(1228)
467 COG3842 PotA ABC-type spermidi 95.3 0.011 2.4E-07 61.6 2.8 36 164-199 32-69 (352)
468 cd03282 ABC_MSH4_euk MutS4 hom 95.3 0.037 8E-07 53.4 6.3 24 164-187 30-53 (204)
469 TIGR01448 recD_rel helicase, p 95.3 0.032 7E-07 63.8 6.7 26 162-187 337-362 (720)
470 PRK04841 transcriptional regul 95.3 0.17 3.7E-06 59.1 12.9 35 162-197 31-65 (903)
471 PRK14700 recombination factor 95.3 0.055 1.2E-06 54.9 7.5 70 357-437 23-92 (300)
472 PRK00081 coaE dephospho-CoA ki 95.3 0.018 3.9E-07 55.0 3.9 30 165-195 4-33 (194)
473 cd00561 CobA_CobO_BtuR ATP:cor 95.3 0.21 4.6E-06 46.3 10.8 23 165-187 4-26 (159)
474 PRK00023 cmk cytidylate kinase 95.3 0.016 3.5E-07 56.8 3.6 30 164-193 5-34 (225)
475 TIGR02525 plasmid_TraJ plasmid 95.2 0.045 9.7E-07 57.7 7.1 26 162-187 148-173 (372)
476 PLN03187 meiotic recombination 95.2 0.11 2.4E-06 54.1 10.0 37 162-198 125-170 (344)
477 smart00534 MUTSac ATPase domai 95.2 0.035 7.7E-07 52.5 5.8 20 166-185 2-21 (185)
478 cd03285 ABC_MSH2_euk MutS2 hom 95.2 0.082 1.8E-06 51.7 8.5 25 162-186 29-53 (222)
479 TIGR00959 ffh signal recogniti 95.2 0.053 1.1E-06 58.2 7.5 39 162-200 98-140 (428)
480 PLN02348 phosphoribulokinase 95.2 0.074 1.6E-06 56.2 8.3 26 163-188 49-74 (395)
481 PF00488 MutS_V: MutS domain V 95.2 0.053 1.1E-06 53.6 6.9 24 164-187 44-67 (235)
482 PF01202 SKI: Shikimate kinase 95.1 0.012 2.6E-07 54.2 2.2 26 172-197 1-26 (158)
483 PF00625 Guanylate_kin: Guanyl 95.1 0.032 6.8E-07 52.6 5.1 29 163-191 2-30 (183)
484 TIGR03877 thermo_KaiC_1 KaiC d 95.1 0.031 6.6E-07 55.1 5.2 37 162-198 20-59 (237)
485 PRK14733 coaE dephospho-CoA ki 95.1 0.024 5.2E-07 54.8 4.2 34 162-195 5-38 (204)
486 PRK06761 hypothetical protein; 95.1 0.023 4.9E-07 57.6 4.1 32 164-195 4-35 (282)
487 cd01672 TMPK Thymidine monopho 95.1 0.027 5.9E-07 52.8 4.5 22 166-187 3-24 (200)
488 PRK08099 bifunctional DNA-bind 95.0 0.024 5.1E-07 60.4 4.4 32 162-193 218-249 (399)
489 TIGR00416 sms DNA repair prote 95.0 0.025 5.5E-07 61.2 4.7 37 162-198 93-132 (454)
490 PF07931 CPT: Chloramphenicol 95.0 0.022 4.8E-07 53.6 3.6 37 165-201 3-39 (174)
491 cd00984 DnaB_C DnaB helicase C 95.0 0.033 7.2E-07 54.5 5.0 37 162-198 12-52 (242)
492 COG5245 DYN1 Dynein, heavy cha 95.0 0.07 1.5E-06 63.6 8.1 91 162-266 1493-1594(3164)
493 COG0467 RAD55 RecA-superfamily 95.0 0.037 8E-07 55.2 5.3 37 162-198 22-61 (260)
494 cd02025 PanK Pantothenate kina 95.0 0.032 7E-07 54.4 4.8 23 166-188 2-24 (220)
495 PRK05703 flhF flagellar biosyn 95.0 0.097 2.1E-06 56.2 8.8 37 163-199 221-262 (424)
496 TIGR03881 KaiC_arch_4 KaiC dom 94.9 0.034 7.3E-07 54.2 4.8 35 162-196 19-56 (229)
497 TIGR02533 type_II_gspE general 94.9 0.05 1.1E-06 59.4 6.6 27 162-188 241-267 (486)
498 cd03286 ABC_MSH6_euk MutS6 hom 94.9 0.13 2.8E-06 50.2 8.9 25 163-187 30-54 (218)
499 PRK10436 hypothetical protein; 94.9 0.052 1.1E-06 58.9 6.5 27 162-188 217-243 (462)
500 COG2274 SunT ABC-type bacterio 94.9 0.12 2.7E-06 58.8 9.8 38 162-199 498-537 (709)
No 1
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-78 Score=608.05 Aligned_cols=453 Identities=57% Similarity=0.867 Sum_probs=387.8
Q ss_pred CCCCcccccccccc---cCCCCccchhhhhhccchhhcccCCcccCCCCCCCCCCccccccCCCCCCCCCCCCCCChHHH
Q 038067 2 VNFCPKCKTAFYFR---PFKLTPLEGSFIELGKVKVEEIMGGFIRKDGESNGIESESETENGNRNRNSEGNIDLPTPKEI 78 (510)
Q Consensus 2 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el 78 (510)
.++|..|.....|. +|...+.+.+|..++++... ..+-.....| .|-.-.+.+|+|++|
T Consensus 78 ~~~~s~~~~~~t~~~s~~f~~~k~~~sfv~~~~~~~~----------------~~~~~~p~~~--~gg~~~k~~P~PkeI 139 (564)
T KOG0745|consen 78 PKCTSQCTPLETFVSSQGFILCKCNKSFVVLYEADGA----------------KPGKLSPSNR--DGGFQLKPPPTPKEI 139 (564)
T ss_pred ccccccCCchhhccCCCCeEEeeccchhhhhhhcccC----------------CCCCCCcccc--ccccccCCCCChHHH
Confidence 45677788888888 57777889999998882221 1111112233 222333378999999
Q ss_pred HhhhccccccchhhhhccchhhhhhhhhhhhhHHHHHHHHHHHHhhhh--hhhhhhc--------ccccccccccCCccC
Q 038067 79 CKGLDEFVIGQERAKKSHIFCILVDMLVYVIGACCAVYNHYKRIYHSS--LQKELVS--------DHLYVDSILGSGVKS 148 (510)
Q Consensus 79 ~~~L~~~ViGQ~~ak~~~~~~~~~~~~~~~~~l~~av~~~~~r~~~~~--~~~~~~~--------~~~~~~~~~~~~~~~ 148 (510)
+++||+|||||+.||++ |++||||||+|++++. ..++... +.+...++......+
T Consensus 140 ~~~Ldk~VVGQe~AKKv---------------LsVAVYnHYkRI~hn~~s~~~~~a~~s~~~~~~~~P~~~~~~~~~a~~ 204 (564)
T KOG0745|consen 140 CEYLDKFVVGQEKAKKV---------------LSVAVYNHYKRIYHNEPSRQKELAEASKSAKDRDNPIELEISESNAQW 204 (564)
T ss_pred HHHhhhheechhhhhhe---------------eeehhhHHHHHHhcchHHHHHHHhhhhhcccCCCCccccccccccccc
Confidence 99999999999999999 9999999999999942 2222110 011111111111112
Q ss_pred ------CCCCCCcc-hhhhccCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhc
Q 038067 149 ------GNCNVEND-EIVELEKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAAD 221 (510)
Q Consensus 149 ------g~~~~~~~-~~~~~~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~ 221 (510)
++...+++ +++++.++|+||.||+|+|||+||+.||+.+++||..+||++++++||+|++++..+.+++..+.
T Consensus 205 ~~~~r~~~~~ld~~~~dv~LeKSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~ 284 (564)
T KOG0745|consen 205 PNNQRQIAKALDEDDEDVELEKSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAE 284 (564)
T ss_pred ccccchhcccccccccceeeecccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHcc
Confidence 33333333 58999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhcCcEEEEcchhhhh-hhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecC
Q 038067 222 FDVEAAQRGIVYIDEVDKIV-KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICG 300 (510)
Q Consensus 222 ~~~~~~~~~Vl~iDEidkl~-~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~t 300 (510)
+++++++.||+||||+||+. ++++.+..||+++++||++||+++||+.+.+| ..|.++.++++.+.|||+|++|||+
T Consensus 285 ~nVekAQqGIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVp--eK~~~~~~rgd~vqiDTtnILFias 362 (564)
T KOG0745|consen 285 YNVEKAQQGIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVP--EKGSRRKPRGDTVQIDTTNILFIAS 362 (564)
T ss_pred CCHHHHhcCeEEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEccc--CCCCCCCCCCCeEEEeccceEEEec
Confidence 99999999999999999999 66677788999999999999999999999998 8999999999999999999999999
Q ss_pred CCccchHHHHHhhcccCCCCcCcc----ccccccc-CCCchh-hhhhhhhhccCchhhhhcCCchhhhcccCceEecCCC
Q 038067 301 GAFVGLEKTISERRQDSSIGFGAP----VRANMRT-GGLTDA-LVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSAL 374 (510)
Q Consensus 301 g~~~~l~~~i~~~~~~~~~gf~~~----~~~~~~~-~~~~~~-~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~L 374 (510)
|+|.+|++++.+|+.+.++||+.+ .+.++.+ +..... .....+++.+++.||+.+|++|||++||+++|+|.+|
T Consensus 363 GAF~~Ldk~I~rR~~d~slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L 442 (564)
T KOG0745|consen 363 GAFVGLDKIISRRLDDKSLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSL 442 (564)
T ss_pred ccccchHHHHHHhhcchhcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeecccc
Confidence 999999999999999999999998 6667666 333333 3455699999999999999999999999999999999
Q ss_pred CHHHHHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHHhcCcCCCCCCCcc
Q 038067 375 NEDQLVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSV 454 (510)
Q Consensus 375 s~eel~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~~~~~~~~~~~~i 454 (510)
++++|.+|++++.|++++||+.+|.+.+++|+||++|++.||+.++..++|||+||.++|++|+++||+.|+. .|
T Consensus 443 ~~~~Lv~VLtEPknaL~~Qyk~lf~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~LleamfevPGS-----dI 517 (564)
T KOG0745|consen 443 DEDQLVRVLTEPKNALGKQYKKLFGMDNVELHFTEKALEAIAQLALKRKTGARGLRSILESLLLEAMFEVPGS-----DI 517 (564)
T ss_pred CHHHHHHHHhcchhhHHHHHHHHhccCCeeEEecHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhcccCCCC-----ce
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999965 49
Q ss_pred cEEEEccccccCcCCCCcceeEecCCchHHHHHHhhhccc
Q 038067 455 NAVLVDKEAVGSVDAPGCGAKILHGDGELERVLHETKSAH 494 (510)
Q Consensus 455 ~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (510)
..|+||++.|.+...++|.++++.|++.+++++.+.+.+.
T Consensus 518 ~~V~Vdee~v~g~~~~~~s~~~~~~~~~~~~~~se~~~~~ 557 (564)
T KOG0745|consen 518 KAVLVDEEAVKGEKEPGYSRKILKGDEVLERYVSETESKD 557 (564)
T ss_pred EEEEecHHHhcccCCCccchhhhcccchhhhhcccccccc
Confidence 9999999999999999999999999999999998877665
No 2
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-73 Score=559.99 Aligned_cols=347 Identities=59% Similarity=0.951 Sum_probs=325.8
Q ss_pred CCCCChHHHHhhhccccccchhhhhccchhhhhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhhcccccccccccCCccCC
Q 038067 70 IDLPTPKEICKGLDEFVIGQERAKKSHIFCILVDMLVYVIGACCAVYNHYKRIYHSSLQKELVSDHLYVDSILGSGVKSG 149 (510)
Q Consensus 70 ~~~~~~~el~~~L~~~ViGQ~~ak~~~~~~~~~~~~~~~~~l~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g 149 (510)
..+|+|+||+++||+|||||++||++ |++||||||||+....
T Consensus 47 ~~lPtP~eik~~Ld~YVIGQe~AKKv---------------LsVAVYNHYKRl~~~~----------------------- 88 (408)
T COG1219 47 SELPTPKEIKAHLDEYVIGQEQAKKV---------------LSVAVYNHYKRLNNKE----------------------- 88 (408)
T ss_pred ccCCChHHHHHHhhhheecchhhhce---------------eeeeehhHHHHHhccC-----------------------
Confidence 46899999999999999999999999 9999999999997642
Q ss_pred CCCCCcchhhhccCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcC
Q 038067 150 NCNVENDEIVELEKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQR 229 (510)
Q Consensus 150 ~~~~~~~~~~~~~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~ 229 (510)
..+++++.++|+||+||+|||||.||++||+.+++||...|+++++++||+|++++..+..+++.+.+++.+++.
T Consensus 89 -----~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAer 163 (408)
T COG1219 89 -----DNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAER 163 (408)
T ss_pred -----CCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhC
Confidence 113477899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcchhhhh-hhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHH
Q 038067 230 GIVYIDEVDKIV-KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEK 308 (510)
Q Consensus 230 ~Vl~iDEidkl~-~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~ 308 (510)
||||||||||++ ++.+.+++||+||++||++||+++||+...+| .+|+++++..+++.|||+|++|||+|+|.+|++
T Consensus 164 GIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVP--PqGGRKHP~Qe~iqvDT~NILFIcgGAF~Glek 241 (408)
T COG1219 164 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVP--PQGGRKHPQQEFIQVDTSNILFICGGAFAGLEK 241 (408)
T ss_pred CeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccC--CCCCCCCCccceEEEcccceeEEeccccccHHH
Confidence 999999999999 56688999999999999999999999999998 899999999999999999999999999999999
Q ss_pred HHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhH
Q 038067 309 TISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKN 388 (510)
Q Consensus 309 ~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~ 388 (510)
++.+|...+.+||+++..... .......++..+.|+||+++|++|||++|++.+..+.+|+++++.+|+.++.|
T Consensus 242 iI~~R~~~~~iGF~a~~~~~~------~~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkN 315 (408)
T COG1219 242 IIKKRLGKKGIGFGAEVKSKS------KKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKN 315 (408)
T ss_pred HHHHhccCCcccccccccchh------hhhhHHHHHHhcChHHHHHcCCcHHHhcccceeeehhhcCHHHHHHHHhcccH
Confidence 999999999999999865421 12344788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHHhcCcCCCCCCCcccEEEEccccccCcC
Q 038067 389 ALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAVGSVD 468 (510)
Q Consensus 389 ~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~~~~~~~~~~~~i~~~~v~~~~v~~~~ 468 (510)
++++||+++|.+.++++.|+++|++.||+.+....+|||+||.++|.++.+.||++|..+ .+..++|+++++.+..
T Consensus 316 AlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A~~rkTGARGLRsI~E~~lld~MfelPs~~----~v~~v~I~~~~v~~~~ 391 (408)
T COG1219 316 ALVKQYQKLFEMDGVELEFTEEALKAIAKKAIERKTGARGLRSIIEELLLDVMFELPSLE----DVEKVVITEEVVDGNA 391 (408)
T ss_pred HHHHHHHHHhcccCceEEEcHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhhCCCCC----CceEEEEeHHHhCCCC
Confidence 999999999999999999999999999999999999999999999999999999999886 5889999999999877
Q ss_pred CCC
Q 038067 469 APG 471 (510)
Q Consensus 469 ~~~ 471 (510)
+|.
T Consensus 392 ~p~ 394 (408)
T COG1219 392 EPL 394 (408)
T ss_pred CCe
Confidence 664
No 3
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=100.00 E-value=2.5e-55 Score=459.27 Aligned_cols=347 Identities=59% Similarity=0.943 Sum_probs=306.1
Q ss_pred CCCCChHHHHhhhccccccchhhhhccchhhhhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhhcccccccccccCCccCC
Q 038067 70 IDLPTPKEICKGLDEFVIGQERAKKSHIFCILVDMLVYVIGACCAVYNHYKRIYHSSLQKELVSDHLYVDSILGSGVKSG 149 (510)
Q Consensus 70 ~~~~~~~el~~~L~~~ViGQ~~ak~~~~~~~~~~~~~~~~~l~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g 149 (510)
..+++|++|++.|+++|+||++||+. ++++||+||+|+.......
T Consensus 63 ~~~~~p~~i~~~L~~~ViGQe~A~~~---------------l~~av~~h~~~~~~~~~~~-------------------- 107 (413)
T TIGR00382 63 SYLPTPKEIKAHLDEYVIGQEQAKKV---------------LSVAVYNHYKRLNFEKNKK-------------------- 107 (413)
T ss_pred cCCCCHHHHHHHhcceecCHHHHHHH---------------HHHHHHHHHhhhccccccc--------------------
Confidence 34789999999999999999999999 9999999999985410000
Q ss_pred CCCCCcchhhhccCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcC
Q 038067 150 NCNVENDEIVELEKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQR 229 (510)
Q Consensus 150 ~~~~~~~~~~~~~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~ 229 (510)
.+..+.+.+.++||+||||||||++|+++|+.++.||..++++.++.+||+|++.+..+..+++..++.+..+.+
T Consensus 108 -----~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~ 182 (413)
T TIGR00382 108 -----SDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQK 182 (413)
T ss_pred -----cccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhccc
Confidence 011234467899999999999999999999999999999999999988999998888888888888888888999
Q ss_pred cEEEEcchhhhhhh-ccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHH
Q 038067 230 GIVYIDEVDKIVKA-ESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEK 308 (510)
Q Consensus 230 ~Vl~iDEidkl~~~-~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~ 308 (510)
+||||||||++.+. ++.+.++++++++||+.||++|||..+++| +.|+++.+..++++|+|+|++|||+|+|.++++
T Consensus 183 gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~--~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~ 260 (413)
T TIGR00382 183 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVP--PQGGRKHPYQEFIQIDTSNILFICGGAFVGLEK 260 (413)
T ss_pred ceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecc--cCCCccccCCCeEEEEcCCceeeecccccChHH
Confidence 99999999999853 455678999999999999999999888877 788899999999999999999999999999999
Q ss_pred HHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhH
Q 038067 309 TISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKN 388 (510)
Q Consensus 309 ~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~ 388 (510)
++.++.....+||+.+.... ......+++.+.++||++++|+|||++|+|.++.|.||+.+++.+|+..+++
T Consensus 261 i~~~r~~~~~~gf~~~~~~~--------~~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n 332 (413)
T TIGR00382 261 IIKKRTGKSSIGFGAEVKKK--------SKEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKN 332 (413)
T ss_pred HHHHHhhhcccccccccccc--------chhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHH
Confidence 99999888889997543211 0122366777888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHHhcCcCCCCCCCcccEEEEccccccCcC
Q 038067 389 ALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAVGSVD 468 (510)
Q Consensus 389 ~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~~~~~~~~~~~~i~~~~v~~~~v~~~~ 468 (510)
.++++|++++..+++.+.++++++++|++.+++..+|||+|+++|++.+.+.|+++|..+ .+..++||++.+....
T Consensus 333 ~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e~p~~~----~~~~v~i~~~~v~~~~ 408 (413)
T TIGR00382 333 ALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFDLPSLE----DLEKVVITKETVLKQS 408 (413)
T ss_pred HHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhhCCCCC----CCcEEEECHHHHcCcC
Confidence 999999999999999999999999999999999999999999999999999999999874 4778999999987654
Q ss_pred CC
Q 038067 469 AP 470 (510)
Q Consensus 469 ~~ 470 (510)
+|
T Consensus 409 ~~ 410 (413)
T TIGR00382 409 EP 410 (413)
T ss_pred CC
Confidence 43
No 4
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=100.00 E-value=3.4e-55 Score=460.42 Aligned_cols=345 Identities=60% Similarity=0.969 Sum_probs=307.1
Q ss_pred CCChHHHHhhhccccccchhhhhccchhhhhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhhcccccccccccCCccCCCC
Q 038067 72 LPTPKEICKGLDEFVIGQERAKKSHIFCILVDMLVYVIGACCAVYNHYKRIYHSSLQKELVSDHLYVDSILGSGVKSGNC 151 (510)
Q Consensus 72 ~~~~~el~~~L~~~ViGQ~~ak~~~~~~~~~~~~~~~~~l~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 151 (510)
+++|++|++.|+++|+||+.||++ |+++|++||+|+......
T Consensus 59 ~~~p~~i~~~L~~~ViGq~~ak~~---------------l~~av~~~~~r~~~~~~~----------------------- 100 (412)
T PRK05342 59 LPTPKEIKAHLDQYVIGQERAKKV---------------LSVAVYNHYKRLRHGDKK----------------------- 100 (412)
T ss_pred CCCHHHHHHHHhhHeeChHHHHHH---------------HHHHHHHHHHhhhccccc-----------------------
Confidence 899999999999999999999999 999999999998652110
Q ss_pred CCCcchhhhccCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcE
Q 038067 152 NVENDEIVELEKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGI 231 (510)
Q Consensus 152 ~~~~~~~~~~~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~V 231 (510)
.+.+.++..++||+||||||||++|+++|+.++.||+.++++.+++.||+|.+.+..+..+++.+.+.+..+.++|
T Consensus 101 ----~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gI 176 (412)
T PRK05342 101 ----DDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGI 176 (412)
T ss_pred ----ccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcE
Confidence 0133457789999999999999999999999999999999999998999999988888888887777888889999
Q ss_pred EEEcchhhhhhh-ccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHH
Q 038067 232 VYIDEVDKIVKA-ESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTI 310 (510)
Q Consensus 232 l~iDEidkl~~~-~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i 310 (510)
|||||||++... .+.+.++|++++++|+.||++|||+.+++| ++|+++.+..++++|+|+|++|||+|+|.++++++
T Consensus 177 i~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~--~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~ 254 (412)
T PRK05342 177 VYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVP--PQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKII 254 (412)
T ss_pred EEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeC--CCCCcCcCCCCeEEeccCCceeeecccccCcHHHH
Confidence 999999999854 344568999999999999999999999887 88999999999999999999999999999999999
Q ss_pred HhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHH
Q 038067 311 SERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNAL 390 (510)
Q Consensus 311 ~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l 390 (510)
.+|+....+||+....... .......+++.+.|+||++++|+|||++|+|.++.|.+|+++++.+|+..+++.+
T Consensus 255 ~~r~~~~~~gf~~~~~~~~------~~~~~~~~~~~~~~~dL~~~gf~PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l 328 (412)
T PRK05342 255 KQRLGKKGIGFGAEVKSKK------EKRTEGELLKQVEPEDLIKFGLIPEFIGRLPVVATLEELDEEALVRILTEPKNAL 328 (412)
T ss_pred HHHHhhcccCCcccccccc------ccchhHHHHHhcCHHHHHHHhhhHHHhCCCCeeeecCCCCHHHHHHHHHHHHHHH
Confidence 9999999999986532210 1111257788899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHHhcCcCCCCCCCcccEEEEccccccCcCCC
Q 038067 391 GRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAVGSVDAP 470 (510)
Q Consensus 391 ~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~~~~~~~~~~~~i~~~~v~~~~v~~~~~~ 470 (510)
+++|++++..+++.+.++++++++|++.+|..++|||+|+++|++.+.+.++++|..+ .++.+.|+.+.+....+|
T Consensus 329 ~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~~p~~~----~~~~v~I~~~~v~~~~~~ 404 (412)
T PRK05342 329 VKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFELPSRE----DVEKVVITKEVVEGKAKP 404 (412)
T ss_pred HHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHhccccC----CCceEEECHHHhccccCC
Confidence 9999999999999999999999999999999999999999999999999999999764 467899999999765433
No 5
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=100.00 E-value=8.8e-47 Score=390.04 Aligned_cols=283 Identities=44% Similarity=0.698 Sum_probs=246.1
Q ss_pred ChHHHHhhhccccccchhhhhccchhhhhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhhcccccccccccCCccCCCCCC
Q 038067 74 TPKEICKGLDEFVIGQERAKKSHIFCILVDMLVYVIGACCAVYNHYKRIYHSSLQKELVSDHLYVDSILGSGVKSGNCNV 153 (510)
Q Consensus 74 ~~~el~~~L~~~ViGQ~~ak~~~~~~~~~~~~~~~~~l~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 153 (510)
+|++|.++|+++|+||++||++ +++++++||+|......
T Consensus 2 tP~~I~~~Ld~~IiGQ~eAkk~---------------lsvAl~n~~~r~~~~~~-------------------------- 40 (441)
T TIGR00390 2 TPREIVAELDKYIIGQDNAKKS---------------VAIALRNRYRRSQLNEE-------------------------- 40 (441)
T ss_pred CHHHHHHHHhhhccCHHHHHHH---------------HHHHHHhhhhhhccccc--------------------------
Confidence 7999999999999999999999 99999999999753200
Q ss_pred CcchhhhccCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhh-------------
Q 038067 154 ENDEIVELEKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAA------------- 220 (510)
Q Consensus 154 ~~~~~~~~~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~------------- 220 (510)
.....+++++||+||||||||++|++||+.++.||+.+|++.++++||+|.+++..++.++..+
T Consensus 41 ---~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dvE~i~r~l~e~A~~~i~~d~i~~~r 117 (441)
T TIGR00390 41 ---LKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESMVRDLTDAAVKLVKEEAIEKVR 117 (441)
T ss_pred ---cccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 0112367899999999999999999999999999999999999988999988777777766544
Q ss_pred --------------------ch---------------------------------h------------------------
Q 038067 221 --------------------DF---------------------------------D------------------------ 223 (510)
Q Consensus 221 --------------------~~---------------------------------~------------------------ 223 (510)
.. +
T Consensus 118 ~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~v~~~~~~~~~~~~~~~~~~~~~~~ 197 (441)
T TIGR00390 118 DRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEIDVSAKMPSGIEIMAPPGMEEMTMQL 197 (441)
T ss_pred HHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEEeecCCCCCccccCCCcchhHHHhhH
Confidence 00 0
Q ss_pred ---------------------------------------------HHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHH
Q 038067 224 ---------------------------------------------VEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQ 258 (510)
Q Consensus 224 ---------------------------------------------~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~ 258 (510)
-...+.||||||||||+.... .+.++|+|+++||
T Consensus 198 ~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVfiDEiDKIa~~~-~~~~~DvS~eGVQ 276 (441)
T TIGR00390 198 QSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIFIDEIDKIAKKG-ESSGADVSREGVQ 276 (441)
T ss_pred HHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEEchhhhcccC-CCCCCCCCccchh
Confidence 012578999999999999654 3568999999999
Q ss_pred HHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCcCcccccccccCCCchhh
Q 038067 259 QALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDAL 338 (510)
Q Consensus 259 ~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~ 338 (510)
+.||+++||..+.+. ...|+|+|++|||+|+|..
T Consensus 277 ~~LLkilEGt~v~~k-------------~~~v~T~~ILFI~~GAF~~--------------------------------- 310 (441)
T TIGR00390 277 RDLLPIVEGSTVNTK-------------YGMVKTDHILFIAAGAFQL--------------------------------- 310 (441)
T ss_pred ccccccccCceeeec-------------ceeEECCceeEEecCCcCC---------------------------------
Confidence 999999999888742 2479999999999999863
Q ss_pred hhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHh
Q 038067 339 VTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKK 418 (510)
Q Consensus 339 ~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~ 418 (510)
.+|+| ++|||++||++++.+.+|+.+++.+||+++.+++++||+.+|...++++.|+++|+++||+.
T Consensus 311 --------~kp~D-----lIPEl~GR~Pi~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~ 377 (441)
T TIGR00390 311 --------AKPSD-----LIPELQGRFPIRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAEL 377 (441)
T ss_pred --------CChhh-----ccHHHhCccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHH
Confidence 12444 68999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCC-----CCCChhHHHHHHHHHHHHHHhcCcCCCCCCCcccEEEEcccccc
Q 038067 419 AMA-----KNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAVG 465 (510)
Q Consensus 419 ~~~-----~~~gaR~L~~~ie~~l~~~l~~~~~~~~~~~~i~~~~v~~~~v~ 465 (510)
++. .+.|||+|++++|+++.+.+|++|+. .+..++||.+.|.
T Consensus 378 A~~~N~~~~~iGAR~LrtilE~~l~d~~fe~p~~-----~~~~v~I~~~~V~ 424 (441)
T TIGR00390 378 AYNVNEKTENIGARRLHTVLERLLEDISFEAPDL-----SGQNITIDADYVS 424 (441)
T ss_pred HHHhcccccccchhhHHHHHHHHHHHHHhcCCCC-----CCCEEEECHHHHH
Confidence 986 79999999999999999999999986 3678999998875
No 6
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=100.00 E-value=2.7e-46 Score=386.60 Aligned_cols=284 Identities=43% Similarity=0.705 Sum_probs=246.9
Q ss_pred CChHHHHhhhccccccchhhhhccchhhhhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhhcccccccccccCCccCCCCC
Q 038067 73 PTPKEICKGLDEFVIGQERAKKSHIFCILVDMLVYVIGACCAVYNHYKRIYHSSLQKELVSDHLYVDSILGSGVKSGNCN 152 (510)
Q Consensus 73 ~~~~el~~~L~~~ViGQ~~ak~~~~~~~~~~~~~~~~~l~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 152 (510)
.+|++|.++|+++|+||++||++ +++++++||+|......
T Consensus 4 ~~p~~I~~~Ld~~IiGQe~Akka---------------lavAl~~~~~r~~l~~~------------------------- 43 (443)
T PRK05201 4 LTPREIVSELDKYIIGQDDAKRA---------------VAIALRNRWRRMQLPEE------------------------- 43 (443)
T ss_pred CCHHHHHHHhccccCCHHHHHHH---------------HHHHHHHHHHHhcCCcc-------------------------
Confidence 48999999999999999999999 99999999998743210
Q ss_pred CCcchhhhccCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhh------------
Q 038067 153 VENDEIVELEKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAA------------ 220 (510)
Q Consensus 153 ~~~~~~~~~~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~------------ 220 (510)
......+.++||+||||||||++|++||+.++.||+.+|++.+.++||+|.+++..++.++..+
T Consensus 44 ----~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~e~~ir~L~~~A~~~~~~~~~~~~ 119 (443)
T PRK05201 44 ----LRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLVEIAVKMVREEKREKV 119 (443)
T ss_pred ----cccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCCHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 1122356899999999999999999999999999999999999999999988877777776555
Q ss_pred -----------------------------------------------------------c-------hh-----------
Q 038067 221 -----------------------------------------------------------D-------FD----------- 223 (510)
Q Consensus 221 -----------------------------------------------------------~-------~~----------- 223 (510)
. +.
T Consensus 120 ~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~~~~~~~~~~~~~~~~~~~~~~~~ 199 (443)
T PRK05201 120 REKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEIEVAEAAPMMEIMGPPGMEEMTIQL 199 (443)
T ss_pred HHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEEEecCCCCcccCCCCcchhHHHHHH
Confidence 0 00
Q ss_pred --------------------------------------------HHH-hcCcEEEEcchhhhhhhccCCCCCCCchhhHH
Q 038067 224 --------------------------------------------VEA-AQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQ 258 (510)
Q Consensus 224 --------------------------------------------~~~-~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~ 258 (510)
+.. .+.||||||||||++.... +.++|+|+++||
T Consensus 200 ~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfiDEiDKIa~~~~-~~~~DvS~eGVQ 278 (443)
T PRK05201 200 QDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFIDEIDKIAARGG-SSGPDVSREGVQ 278 (443)
T ss_pred HHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEEcchhhcccCC-CCCCCCCccchh
Confidence 122 3789999999999996543 358999999999
Q ss_pred HHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCcCcccccccccCCCchhh
Q 038067 259 QALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDAL 338 (510)
Q Consensus 259 ~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~ 338 (510)
+.||+++||..+.+. ...|+|+|++|||+|+|..
T Consensus 279 ~~LLki~EG~~v~~k-------------~~~i~T~~ILFI~~GAF~~--------------------------------- 312 (443)
T PRK05201 279 RDLLPLVEGSTVSTK-------------YGMVKTDHILFIASGAFHV--------------------------------- 312 (443)
T ss_pred cccccccccceeeec-------------ceeEECCceeEEecCCcCC---------------------------------
Confidence 999999999888752 2579999999999999852
Q ss_pred hhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHh
Q 038067 339 VTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKK 418 (510)
Q Consensus 339 ~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~ 418 (510)
..|+| ++|||++||++++.+.+|+.+++.+||+++.+++++||+.+|...++++.|+++|+++||+.
T Consensus 313 --------~kp~D-----lIPEl~GR~Pi~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~ 379 (443)
T PRK05201 313 --------SKPSD-----LIPELQGRFPIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEI 379 (443)
T ss_pred --------CChhh-----ccHHHhCccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHH
Confidence 12334 68999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCC-----CCCChhHHHHHHHHHHHHHHhcCcCCCCCCCcccEEEEcccccc
Q 038067 419 AMA-----KNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAVG 465 (510)
Q Consensus 419 ~~~-----~~~gaR~L~~~ie~~l~~~l~~~~~~~~~~~~i~~~~v~~~~v~ 465 (510)
++. .+.|||+|++++|+++.+.+|++|+. .+..++||.+.|.
T Consensus 380 A~~~N~~~~~iGAR~LrtI~E~~L~d~~Fe~p~~-----~~~~v~I~~~~V~ 426 (443)
T PRK05201 380 AYQVNEKTENIGARRLHTVMEKLLEDISFEAPDM-----SGETVTIDAAYVD 426 (443)
T ss_pred HHHhcccccccchhhHHHHHHHHHHHHhccCCCC-----CCCEEEECHHHHH
Confidence 987 69999999999999999999999987 3678999998885
No 7
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-42 Score=343.96 Aligned_cols=285 Identities=44% Similarity=0.701 Sum_probs=244.9
Q ss_pred CChHHHHhhhccccccchhhhhccchhhhhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhhcccccccccccCCccCCCCC
Q 038067 73 PTPKEICKGLDEFVIGQERAKKSHIFCILVDMLVYVIGACCAVYNHYKRIYHSSLQKELVSDHLYVDSILGSGVKSGNCN 152 (510)
Q Consensus 73 ~~~~el~~~L~~~ViGQ~~ak~~~~~~~~~~~~~~~~~l~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 152 (510)
.+|++|.+.||+|||||+.||++ +++|+.|.|+|......
T Consensus 4 ~tPreIV~eLd~yIIGQ~~AKka---------------VAIALRNR~RR~qL~~~------------------------- 43 (444)
T COG1220 4 MTPREIVSELDRYIIGQDEAKKA---------------VAIALRNRWRRMQLEEE------------------------- 43 (444)
T ss_pred CCHHHHHHHHHhHhcCcHHHHHH---------------HHHHHHHHHHHHhcCHH-------------------------
Confidence 58999999999999999999999 99999999998765321
Q ss_pred CCcchhhhccCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchh---------
Q 038067 153 VENDEIVELEKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFD--------- 223 (510)
Q Consensus 153 ~~~~~~~~~~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~--------- 223 (510)
-+.+..|.|+|++||+|+|||.+||.||+..+.||+.+.++.|++.||+|.+++++++++...+-..
T Consensus 44 ----lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKfTEVGYVGrDVesivRDLve~av~lvke~~~~~v 119 (444)
T COG1220 44 ----LRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKFTEVGYVGRDVESIIRDLVEIAVKLVREEKIEKV 119 (444)
T ss_pred ----HhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeeeeecccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1234588999999999999999999999999999999999999999999999999998875432000
Q ss_pred --------------------------------------------------------------------------------
Q 038067 224 -------------------------------------------------------------------------------- 223 (510)
Q Consensus 224 -------------------------------------------------------------------------------- 223 (510)
T Consensus 120 k~~ae~~aeeRild~Lvp~~~~~~g~~~~~~~~~~~r~~~rkkLr~GeLdd~eIeiev~~~~~~~~~i~~~pgme~~~~~ 199 (444)
T COG1220 120 KDKAEELAEERILDALVPPAKNFWGQSENKQESSATREKFRKKLREGELDDKEIEIEVADKGPPGFEIMGPPGMEEMTNN 199 (444)
T ss_pred HHHHHHHHHHHHHHHhcCCcccccCcCcccccchHHHHHHHHHHHcCCCCccEEEEEEeccCCCccccCCCCcHHHHHHH
Confidence
Q ss_pred ---------------------------------------------H-HHhcCcEEEEcchhhhhhhccCCCCCCCchhhH
Q 038067 224 ---------------------------------------------V-EAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGV 257 (510)
Q Consensus 224 ---------------------------------------------~-~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v 257 (510)
+ ...+.||||||||||++.... .+++++|+++|
T Consensus 200 l~~m~~~~~~~kkkkrk~~Vk~A~~~L~~eea~KLid~e~i~~eAi~~aE~~GIvFIDEIDKIa~~~~-~g~~dvSREGV 278 (444)
T COG1220 200 LQDMFGNLGGKKKKKRKLKVKEAKKLLIEEEADKLIDQEEIKQEAIDAAEQNGIVFIDEIDKIAKRGG-SGGPDVSREGV 278 (444)
T ss_pred HHHHHHHhcCCCcceeeeeHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcCeEEEehhhHHHhcCC-CCCCCcchhhh
Confidence 0 124679999999999997654 44559999999
Q ss_pred HHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCcCcccccccccCCCchh
Q 038067 258 QQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDA 337 (510)
Q Consensus 258 ~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~ 337 (510)
|..||.++||..+.- ..| .|.|..++||++|+|.-
T Consensus 279 QRDlLPlvEGstV~T---KyG----------~VkTdHILFIasGAFh~-------------------------------- 313 (444)
T COG1220 279 QRDLLPLVEGSTVST---KYG----------PVKTDHILFIASGAFHV-------------------------------- 313 (444)
T ss_pred cccccccccCceeec---ccc----------ccccceEEEEecCceec--------------------------------
Confidence 999999999887752 222 57999999999999751
Q ss_pred hhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHH
Q 038067 338 LVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAK 417 (510)
Q Consensus 338 ~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~ 417 (510)
..|+| ++|||-+||++.|.+.+|+.+++++|++++.+++++||+.++..+++.+.|++++++.||+
T Consensus 314 ---------sKPSD-----LiPELQGRfPIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAe 379 (444)
T COG1220 314 ---------AKPSD-----LIPELQGRFPIRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAE 379 (444)
T ss_pred ---------CChhh-----cChhhcCCCceEEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHH
Confidence 13444 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCC-----CCCChhHHHHHHHHHHHHHHhcCcCCCCCCCcccEEEEccccccC
Q 038067 418 KAMA-----KNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAVGS 466 (510)
Q Consensus 418 ~~~~-----~~~gaR~L~~~ie~~l~~~l~~~~~~~~~~~~i~~~~v~~~~v~~ 466 (510)
.+|. .+.|||.|++++|+++.+..|++|+..+ ..+.||.+.|..
T Consensus 380 iA~~vN~~~ENIGARRLhTvlErlLediSFeA~d~~g-----~~v~Id~~yV~~ 428 (444)
T COG1220 380 IAYQVNEKTENIGARRLHTVLERLLEDISFEAPDMSG-----QKVTIDAEYVEE 428 (444)
T ss_pred HHHHhcccccchhHHHHHHHHHHHHHHhCccCCcCCC-----CeEEEcHHHHHH
Confidence 9984 6689999999999999999999999864 557777766653
No 8
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.2e-39 Score=351.30 Aligned_cols=284 Identities=22% Similarity=0.314 Sum_probs=218.5
Q ss_pred CccccccCCCCCCCCCCCCCCCh----HHHHhhhccccccchhhhhccchhhhhhhhhhhhhHHHHHHHHHHHHhhhhhh
Q 038067 53 SESETENGNRNRNSEGNIDLPTP----KEICKGLDEFVIGQERAKKSHIFCILVDMLVYVIGACCAVYNHYKRIYHSSLQ 128 (510)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~----~el~~~L~~~ViGQ~~ak~~~~~~~~~~~~~~~~~l~~av~~~~~r~~~~~~~ 128 (510)
..+..+++| ||+|+....... .++++.|.+.|+||++|+++ ++.+|. |.+.
T Consensus 458 ~Ia~vv~~~--TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~a---------------vs~aIr----raRa---- 512 (786)
T COG0542 458 DIAEVVARW--TGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEA---------------VSDAIR----RARA---- 512 (786)
T ss_pred HHHHHHHHH--HCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHH---------------HHHHHH----HHhc----
Confidence 367789999 999999765544 46999999999999999999 887774 3221
Q ss_pred hhhhcccccccccccCCccCCCCCCCcchhhhccCceEEEEccCCChHHHHHHHHHHHhC---CCeEEEecccccc----
Q 038067 129 KELVSDHLYVDSILGSGVKSGNCNVENDEIVELEKSNVLLMGPTGSGKTLLAKTLARIVN---VPFTITDATALTQ---- 201 (510)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~vLL~GPpGtGKT~lAr~lA~~l~---~p~~~~~~s~l~~---- 201 (510)
|....+ .|.+++||.||||||||.||++||..+. ..++++||+++.+
T Consensus 513 ----------------GL~dp~----------rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsV 566 (786)
T COG0542 513 ----------------GLGDPN----------RPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSV 566 (786)
T ss_pred ----------------CCCCCC----------CCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHH
Confidence 121111 2667999999999999999999999995 7999999999874
Q ss_pred -------ccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeecc
Q 038067 202 -------AGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPI 274 (510)
Q Consensus 202 -------~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~ 274 (510)
+||+|++.++.+++.++.. +.+||+||||+|.++. |++.|||+||.+..+
T Consensus 567 SrLIGaPPGYVGyeeGG~LTEaVRr~-------PySViLlDEIEKAHpd-------------V~nilLQVlDdGrLT--- 623 (786)
T COG0542 567 SRLIGAPPGYVGYEEGGQLTEAVRRK-------PYSVILLDEIEKAHPD-------------VFNLLLQVLDDGRLT--- 623 (786)
T ss_pred HHHhCCCCCCceeccccchhHhhhcC-------CCeEEEechhhhcCHH-------------HHHHHHHHhcCCeee---
Confidence 6999999999999988776 4589999999996554 999999999754444
Q ss_pred CCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhh
Q 038067 275 PDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVA 354 (510)
Q Consensus 275 ~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~ 354 (510)
+..++ .|+++|++||||+|.. -+.+... .++ . ...........+++ .++
T Consensus 624 -------D~~Gr--~VdFrNtiIImTSN~G-s~~i~~~------~~~--~-------~~~~~~~~~~~v~~------~l~ 672 (786)
T COG0542 624 -------DGQGR--TVDFRNTIIIMTSNAG-SEEILRD------ADG--D-------DFADKEALKEAVME------ELK 672 (786)
T ss_pred -------cCCCC--EEecceeEEEEecccc-hHHHHhh------ccc--c-------ccchhhhHHHHHHH------HHH
Confidence 44443 5677777777777722 1222111 111 0 00011122223332 356
Q ss_pred cCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHH
Q 038067 355 YGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLE 434 (510)
Q Consensus 355 ~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie 434 (510)
..|+|||++|+|.+|+|.+|+.+++.+|+...++.+. .++..+++.+.+++++.++|++.+|++.+|||+|+++|+
T Consensus 673 ~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~----~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq 748 (786)
T COG0542 673 KHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLA----KRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQ 748 (786)
T ss_pred hhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHH----HHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHH
Confidence 7899999999999999999999999999997555554 445567999999999999999999999999999999999
Q ss_pred HHHHHHHhcCc
Q 038067 435 NILTEAMFEIP 445 (510)
Q Consensus 435 ~~l~~~l~~~~ 445 (510)
+.+.+.+.+..
T Consensus 749 ~~i~~~La~~i 759 (786)
T COG0542 749 QEIEDPLADEI 759 (786)
T ss_pred HHHHHHHHHHH
Confidence 99999998753
No 9
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-33 Score=311.75 Aligned_cols=280 Identities=20% Similarity=0.295 Sum_probs=217.4
Q ss_pred CccccccCCCCCCCCCCCCCC----ChHHHHhhhccccccchhhhhccchhhhhhhhhhhhhHHHHHHHHHHHHhhhhhh
Q 038067 53 SESETENGNRNRNSEGNIDLP----TPKEICKGLDEFVIGQERAKKSHIFCILVDMLVYVIGACCAVYNHYKRIYHSSLQ 128 (510)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~----~~~el~~~L~~~ViGQ~~ak~~~~~~~~~~~~~~~~~l~~av~~~~~r~~~~~~~ 128 (510)
....+.++| +|+|+..... ...++.+.|.+.|+||++|++. ++.++..+...+...
T Consensus 425 ~i~~v~~~~--tgip~~~~~~~~~~~l~~l~~~L~~~ViGQ~~ai~~---------------l~~~i~~~~~gl~~~--- 484 (758)
T PRK11034 425 DIESVVARI--ARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEA---------------LTEAIKMSRAGLGHE--- 484 (758)
T ss_pred hHHHHHHHH--hCCChhhhhhhHHHHHHHHHHHhcceEeCcHHHHHH---------------HHHHHHHHhccccCC---
Confidence 456679999 9999987443 3457999999999999999999 887775433222110
Q ss_pred hhhhcccccccccccCCccCCCCCCCcchhhhccCceEEEEccCCChHHHHHHHHHHHhCCCeEEEecccccc-------
Q 038067 129 KELVSDHLYVDSILGSGVKSGNCNVENDEIVELEKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQ------- 201 (510)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~------- 201 (510)
..|..++||+||||||||++|+++|+.++.+++.+||+++.+
T Consensus 485 -------------------------------~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~L 533 (758)
T PRK11034 485 -------------------------------HKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRL 533 (758)
T ss_pred -------------------------------CCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHH
Confidence 114568999999999999999999999999999999998753
Q ss_pred ----ccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCC
Q 038067 202 ----AGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDN 277 (510)
Q Consensus 202 ----~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~ 277 (510)
+||+|++..+.+.+.++. .+.+||||||||++.+. +++.||++||++.++ +.
T Consensus 534 iG~~~gyvg~~~~g~L~~~v~~-------~p~sVlllDEieka~~~-------------v~~~LLq~ld~G~lt----d~ 589 (758)
T PRK11034 534 IGAPPGYVGFDQGGLLTDAVIK-------HPHAVLLLDEIEKAHPD-------------VFNLLLQVMDNGTLT----DN 589 (758)
T ss_pred cCCCCCcccccccchHHHHHHh-------CCCcEEEeccHhhhhHH-------------HHHHHHHHHhcCeee----cC
Confidence 478887766666665543 45699999999998765 999999999866554 22
Q ss_pred CCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCC
Q 038067 278 GPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGL 357 (510)
Q Consensus 278 g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~ 357 (510)
.+ ..++++|++||+|+|. +.+.+. +.++||...... ...+ +.++..|
T Consensus 590 ~g--------~~vd~rn~iiI~TsN~-g~~~~~-----~~~~g~~~~~~~-------------~~~~------~~~~~~f 636 (758)
T PRK11034 590 NG--------RKADFRNVVLVMTTNA-GVRETE-----RKSIGLIHQDNS-------------TDAM------EEIKKIF 636 (758)
T ss_pred CC--------ceecCCCcEEEEeCCc-CHHHHh-----hcccCcccchhh-------------HHHH------HHHHHhc
Confidence 22 2568899999999883 333332 235676432100 0111 2345679
Q ss_pred chhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHH
Q 038067 358 IPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENIL 437 (510)
Q Consensus 358 ~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l 437 (510)
+|||++|||.+|.|+||+.+++.+|+...+ .++.+++..+++.+.++++++++|++.+|++.+|||+|+++|++.+
T Consensus 637 ~pefl~Rid~ii~f~~L~~~~l~~I~~~~l----~~~~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l 712 (758)
T PRK11034 637 TPEFRNRLDNIIWFDHLSTDVIHQVVDKFI----VELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNL 712 (758)
T ss_pred CHHHHccCCEEEEcCCCCHHHHHHHHHHHH----HHHHHHHHHCCCCceECHHHHHHHHHhCCCCCCCCchHHHHHHHHH
Confidence 999999999999999999999999998644 4455556778999999999999999999999999999999999999
Q ss_pred HHHHhcC
Q 038067 438 TEAMFEI 444 (510)
Q Consensus 438 ~~~l~~~ 444 (510)
.+++.+.
T Consensus 713 ~~~la~~ 719 (758)
T PRK11034 713 KKPLANE 719 (758)
T ss_pred HHHHHHH
Confidence 9999865
No 10
>CHL00095 clpC Clp protease ATP binding subunit
Probab=100.00 E-value=1e-31 Score=306.43 Aligned_cols=294 Identities=20% Similarity=0.266 Sum_probs=220.7
Q ss_pred CCccccccCCCCCCCCCCCCCCC----hHHHHhhhccccccchhhhhccchhhhhhhhhhhhhHHHHHHHHHHHHhhhhh
Q 038067 52 ESESETENGNRNRNSEGNIDLPT----PKEICKGLDEFVIGQERAKKSHIFCILVDMLVYVIGACCAVYNHYKRIYHSSL 127 (510)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~----~~el~~~L~~~ViGQ~~ak~~~~~~~~~~~~~~~~~l~~av~~~~~r~~~~~~ 127 (510)
...+...++| ||+|+...... ...+++.|.+.|+||+.|++. ++.++..+...+...
T Consensus 475 ~~i~~~~~~~--tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~---------------l~~~i~~~~~gl~~~-- 535 (821)
T CHL00095 475 EDIAEIVSAW--TGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVA---------------VSKAIRRARVGLKNP-- 535 (821)
T ss_pred HHHHHHHHHH--HCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHH---------------HHHHHHHHhhcccCC--
Confidence 3455679999 99999875543 456999999999999999999 887776443322211
Q ss_pred hhhhhcccccccccccCCccCCCCCCCcchhhhccCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccc----
Q 038067 128 QKELVSDHLYVDSILGSGVKSGNCNVENDEIVELEKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALT---- 200 (510)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~---- 200 (510)
..|..++||+||||||||++|++||+.+ ..+++++|++++.
T Consensus 536 --------------------------------~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~ 583 (821)
T CHL00095 536 --------------------------------NRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHT 583 (821)
T ss_pred --------------------------------CCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhcccccc
Confidence 1144579999999999999999999998 4689999999874
Q ss_pred -------cccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeec
Q 038067 201 -------QAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVP 273 (510)
Q Consensus 201 -------~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~ 273 (510)
.+||+|++..+.+...++.. +.+||+|||||++.+. +++.|+++||.+.++
T Consensus 584 ~~~l~g~~~gyvg~~~~~~l~~~~~~~-------p~~VvllDeieka~~~-------------v~~~Llq~le~g~~~-- 641 (821)
T CHL00095 584 VSKLIGSPPGYVGYNEGGQLTEAVRKK-------PYTVVLFDEIEKAHPD-------------IFNLLLQILDDGRLT-- 641 (821)
T ss_pred HHHhcCCCCcccCcCccchHHHHHHhC-------CCeEEEECChhhCCHH-------------HHHHHHHHhccCcee--
Confidence 35899988777777665544 5589999999998665 899999999855554
Q ss_pred cCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhh
Q 038067 274 IPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLV 353 (510)
Q Consensus 274 ~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~ 353 (510)
+..+ ..++++|++||||+|... +.+. .....+||....... ...........+. +.+
T Consensus 642 --------d~~g--~~v~~~~~i~I~Tsn~g~--~~i~--~~~~~~gf~~~~~~~---~~~~~~~~~~~~~------~~~ 698 (821)
T CHL00095 642 --------DSKG--RTIDFKNTLIIMTSNLGS--KVIE--TNSGGLGFELSENQL---SEKQYKRLSNLVN------EEL 698 (821)
T ss_pred --------cCCC--cEEecCceEEEEeCCcch--HHHH--hhccccCCccccccc---ccccHHHHHHHHH------HHH
Confidence 2222 367889999999999642 2222 123457776532110 0111111122222 224
Q ss_pred hcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHH
Q 038067 354 AYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALL 433 (510)
Q Consensus 354 ~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~i 433 (510)
+..|+|||++|+|.+|.|.||+.+++.+|+...++.+.++ +...++.+.++++++++|++.+|++.+|||+|+++|
T Consensus 699 ~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~l~~r----l~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i 774 (821)
T CHL00095 699 KQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNLFKR----LNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAI 774 (821)
T ss_pred HHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHH----HHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHH
Confidence 4569999999999999999999999999999766555444 455799999999999999999999999999999999
Q ss_pred HHHHHHHHhcCc
Q 038067 434 ENILTEAMFEIP 445 (510)
Q Consensus 434 e~~l~~~l~~~~ 445 (510)
++.+.+++++..
T Consensus 775 ~~~i~~~l~~~~ 786 (821)
T CHL00095 775 MRLLEDPLAEEV 786 (821)
T ss_pred HHHHHHHHHHHH
Confidence 999999988654
No 11
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.97 E-value=2.3e-31 Score=300.26 Aligned_cols=279 Identities=23% Similarity=0.339 Sum_probs=211.7
Q ss_pred cccccCCCCCCCCCCCC----CCChHHHHhhhccccccchhhhhccchhhhhhhhhhhhhHHHHHHHHHHHHhhhhhhhh
Q 038067 55 SETENGNRNRNSEGNID----LPTPKEICKGLDEFVIGQERAKKSHIFCILVDMLVYVIGACCAVYNHYKRIYHSSLQKE 130 (510)
Q Consensus 55 ~~~~~~~~~~~~~~~~~----~~~~~el~~~L~~~ViGQ~~ak~~~~~~~~~~~~~~~~~l~~av~~~~~r~~~~~~~~~ 130 (510)
....+.| +|+|+... .....++++.|++.|+||+.|++. ++.++. +....
T Consensus 423 ~~~i~~~--tgiP~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~---------------l~~~i~----~~~~g----- 476 (731)
T TIGR02639 423 ENVVAKM--AHIPVKTVSVDDREKLKNLEKNLKAKIFGQDEAIDS---------------LVSSIK----RSRAG----- 476 (731)
T ss_pred HHHHHHH--hCCChhhhhhHHHHHHHHHHHHHhcceeCcHHHHHH---------------HHHHHH----HHhcC-----
Confidence 4568889 99998653 346668999999999999999999 776654 22110
Q ss_pred hhcccccccccccCCccCCCCCCCcchhhhccCceEEEEccCCChHHHHHHHHHHHhCCCeEEEecccccc---------
Q 038067 131 LVSDHLYVDSILGSGVKSGNCNVENDEIVELEKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQ--------- 201 (510)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~--------- 201 (510)
... ...+..++||+||||||||++|++||+.++.+++.+||+++.+
T Consensus 477 ---------------~~~----------~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig 531 (731)
T TIGR02639 477 ---------------LGN----------PNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIG 531 (731)
T ss_pred ---------------CCC----------CCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhc
Confidence 000 0114567999999999999999999999999999999998753
Q ss_pred --ccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCC
Q 038067 202 --AGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGP 279 (510)
Q Consensus 202 --~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~ 279 (510)
+||+|++..+.+.+.++. .+.+||+||||||+.+. +++.|+++||++.++ +..+
T Consensus 532 ~~~gyvg~~~~~~l~~~~~~-------~p~~VvllDEieka~~~-------------~~~~Ll~~ld~g~~~----d~~g 587 (731)
T TIGR02639 532 APPGYVGFEQGGLLTEAVRK-------HPHCVLLLDEIEKAHPD-------------IYNILLQVMDYATLT----DNNG 587 (731)
T ss_pred CCCCCcccchhhHHHHHHHh-------CCCeEEEEechhhcCHH-------------HHHHHHHhhccCeee----cCCC
Confidence 578888877767665544 46689999999998665 899999999866554 2222
Q ss_pred CCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCch
Q 038067 280 RKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIP 359 (510)
Q Consensus 280 ~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~P 359 (510)
..++++|++||+|+|.. .+. ..+..+||...... ... .+.++..|.|
T Consensus 588 --------~~vd~~~~iii~Tsn~g-~~~-----~~~~~~~f~~~~~~-------------~~~------~~~~~~~f~p 634 (731)
T TIGR02639 588 --------RKADFRNVILIMTSNAG-ASE-----MSKPPIGFGSENVE-------------SKS------DKAIKKLFSP 634 (731)
T ss_pred --------cccCCCCCEEEECCCcc-hhh-----hhhccCCcchhhhH-------------HHH------HHHHHhhcCh
Confidence 24678888888888843 111 12234566421100 011 2334567999
Q ss_pred hhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHH
Q 038067 360 EFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTE 439 (510)
Q Consensus 360 efl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~ 439 (510)
||++|||.+|.|.||+.+++.+|++..+..+. +.+...++.+.++++++++|++.+|++.+|||+|+++|++.+.+
T Consensus 635 ef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~----~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~ 710 (731)
T TIGR02639 635 EFRNRLDAIIHFNPLSEEVLEKIVQKFVDELS----KQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKK 710 (731)
T ss_pred HHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHH----HHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHH
Confidence 99999999999999999999999997555443 44455789999999999999999999999999999999999999
Q ss_pred HHhcCc
Q 038067 440 AMFEIP 445 (510)
Q Consensus 440 ~l~~~~ 445 (510)
++.+..
T Consensus 711 ~l~~~~ 716 (731)
T TIGR02639 711 PLSDEI 716 (731)
T ss_pred HHHHHH
Confidence 988653
No 12
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.97 E-value=1.6e-30 Score=295.84 Aligned_cols=284 Identities=19% Similarity=0.264 Sum_probs=210.6
Q ss_pred CccccccCCCCCCCCCCCCCC----ChHHHHhhhccccccchhhhhccchhhhhhhhhhhhhHHHHHHHHHHHHhhhhhh
Q 038067 53 SESETENGNRNRNSEGNIDLP----TPKEICKGLDEFVIGQERAKKSHIFCILVDMLVYVIGACCAVYNHYKRIYHSSLQ 128 (510)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~----~~~el~~~L~~~ViGQ~~ak~~~~~~~~~~~~~~~~~l~~av~~~~~r~~~~~~~ 128 (510)
..+..+++| ||+|+..... .+.++++.|.+.|+||+.|++. ++.++......+..
T Consensus 533 ~i~~vv~~~--tgip~~~~~~~e~~~l~~l~~~L~~~v~GQ~~Av~~---------------v~~~i~~~~~gl~~---- 591 (852)
T TIGR03345 533 AVAEVVADW--TGIPVGRMVRDEIEAVLSLPDRLAERVIGQDHALEA---------------IAERIRTARAGLED---- 591 (852)
T ss_pred HHHHHHHHH--HCCCchhhchhHHHHHHHHHHHhcCeEcChHHHHHH---------------HHHHHHHHhcCCCC----
Confidence 455678999 9999987544 4556999999999999999999 77777422111100
Q ss_pred hhhhcccccccccccCCccCCCCCCCcchhhhccCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEecccccc----
Q 038067 129 KELVSDHLYVDSILGSGVKSGNCNVENDEIVELEKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALTQ---- 201 (510)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~~---- 201 (510)
...|...+||+||||||||++|++||+.+ ...++.+||+++.+
T Consensus 592 ------------------------------~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~ 641 (852)
T TIGR03345 592 ------------------------------PRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTV 641 (852)
T ss_pred ------------------------------CCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhh
Confidence 01144579999999999999999999999 45889999998752
Q ss_pred -------ccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeecc
Q 038067 202 -------AGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPI 274 (510)
Q Consensus 202 -------~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~ 274 (510)
+||+|++.++.+...++. .+.+||+||||+|+.+. +++.|+++|+.+.++
T Consensus 642 ~~l~g~~~gyvg~~~~g~L~~~v~~-------~p~svvllDEieka~~~-------------v~~~Llq~ld~g~l~--- 698 (852)
T TIGR03345 642 SRLKGSPPGYVGYGEGGVLTEAVRR-------KPYSVVLLDEVEKAHPD-------------VLELFYQVFDKGVME--- 698 (852)
T ss_pred ccccCCCCCcccccccchHHHHHHh-------CCCcEEEEechhhcCHH-------------HHHHHHHHhhcceee---
Confidence 489998877777766554 46699999999997654 899999999855443
Q ss_pred CCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhh
Q 038067 275 PDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVA 354 (510)
Q Consensus 275 ~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~ 354 (510)
+..+ ..|+++|++||+|+|.. .+.+.. .. .++.. ..........++. .+.
T Consensus 699 -------d~~G--r~vd~~n~iiI~TSNlg-~~~~~~-~~----~~~~~---------~~~~~~~~~~~~~------~~~ 748 (852)
T TIGR03345 699 -------DGEG--REIDFKNTVILLTSNAG-SDLIMA-LC----ADPET---------APDPEALLEALRP------ELL 748 (852)
T ss_pred -------cCCC--cEEeccccEEEEeCCCc-hHHHHH-hc----cCccc---------CcchHHHHHHHHH------HHH
Confidence 2223 26789999999998843 222211 10 00000 0001111112222 244
Q ss_pred cCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHH
Q 038067 355 YGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLE 434 (510)
Q Consensus 355 ~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie 434 (510)
..|+|||++|++ +|.|.||+.+++.+|+...++.+.+++.. ..++.+.++++++++|++.++.+.+|||+|+++|+
T Consensus 749 ~~f~PEflnRi~-iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~---~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie 824 (852)
T TIGR03345 749 KVFKPAFLGRMT-VIPYLPLDDDVLAAIVRLKLDRIARRLKE---NHGAELVYSEALVEHIVARCTEVESGARNIDAILN 824 (852)
T ss_pred HhccHHHhccee-EEEeCCCCHHHHHHHHHHHHHHHHHHHHH---hcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHH
Confidence 669999999998 78999999999999999877776665432 24889999999999999999999999999999999
Q ss_pred HHHHHHHhcC
Q 038067 435 NILTEAMFEI 444 (510)
Q Consensus 435 ~~l~~~l~~~ 444 (510)
+.+.+++.+.
T Consensus 825 ~~i~~~la~~ 834 (852)
T TIGR03345 825 QTLLPELSRQ 834 (852)
T ss_pred HHHHHHHHHH
Confidence 9999998864
No 13
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.96 E-value=4.2e-28 Score=277.58 Aligned_cols=282 Identities=21% Similarity=0.297 Sum_probs=208.4
Q ss_pred CCccccccCCCCCCCCCCCCCC----ChHHHHhhhccccccchhhhhccchhhhhhhhhhhhhHHHHHHHHHHHHhhhhh
Q 038067 52 ESESETENGNRNRNSEGNIDLP----TPKEICKGLDEFVIGQERAKKSHIFCILVDMLVYVIGACCAVYNHYKRIYHSSL 127 (510)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~----~~~el~~~L~~~ViGQ~~ak~~~~~~~~~~~~~~~~~l~~av~~~~~r~~~~~~ 127 (510)
...+.+.++| ||+|+..... ...++++.|.+.|+||+.|++. ++.++......+..
T Consensus 531 ~~i~~v~~~~--tgip~~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~---------------v~~~i~~~~~gl~~--- 590 (852)
T TIGR03346 531 EEIAEVVSRW--TGIPVSKMLEGEREKLLHMEEVLHERVVGQDEAVEA---------------VSDAIRRSRAGLSD--- 590 (852)
T ss_pred HHHHHHHHHh--cCCCcccccHHHHHHHHHHHHHhhcccCCChHHHHH---------------HHHHHHHHhccCCC---
Confidence 3556678999 9999987543 4456889999999999999999 77666422211111
Q ss_pred hhhhhcccccccccccCCccCCCCCCCcchhhhccCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEecccccc---
Q 038067 128 QKELVSDHLYVDSILGSGVKSGNCNVENDEIVELEKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALTQ--- 201 (510)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~~--- 201 (510)
...+..++||+||||||||++|++||+.+ +.+++.+||+.+.+
T Consensus 591 -------------------------------~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~ 639 (852)
T TIGR03346 591 -------------------------------PNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHS 639 (852)
T ss_pred -------------------------------CCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccch
Confidence 01145689999999999999999999988 46999999987642
Q ss_pred --------ccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeec
Q 038067 202 --------AGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVP 273 (510)
Q Consensus 202 --------~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~ 273 (510)
+||+|++..+.++..++.. +.+|||||||+++.+. +++.||++|+.+.++
T Consensus 640 ~~~l~g~~~g~~g~~~~g~l~~~v~~~-------p~~vlllDeieka~~~-------------v~~~Ll~~l~~g~l~-- 697 (852)
T TIGR03346 640 VARLIGAPPGYVGYEEGGQLTEAVRRK-------PYSVVLFDEVEKAHPD-------------VFNVLLQVLDDGRLT-- 697 (852)
T ss_pred HHHhcCCCCCccCcccccHHHHHHHcC-------CCcEEEEeccccCCHH-------------HHHHHHHHHhcCcee--
Confidence 4788887666676665543 4579999999998765 899999999855443
Q ss_pred cCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhh
Q 038067 274 IPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLV 353 (510)
Q Consensus 274 ~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~ 353 (510)
+.. ...++++|++||+|+|.. .+.+.. .. + ..........++ +-+
T Consensus 698 --------d~~--g~~vd~rn~iiI~TSn~g-~~~~~~-~~-----~------------~~~~~~~~~~~~------~~~ 742 (852)
T TIGR03346 698 --------DGQ--GRTVDFRNTVIIMTSNLG-SQFIQE-LA-----G------------GDDYEEMREAVM------EVL 742 (852)
T ss_pred --------cCC--CeEEecCCcEEEEeCCcc-hHhHhh-hc-----c------------cccHHHHHHHHH------HHH
Confidence 111 246788899999988842 111111 00 0 000011111111 123
Q ss_pred hcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHH
Q 038067 354 AYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALL 433 (510)
Q Consensus 354 ~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~i 433 (510)
+..|+|||++|||.++.|.||+.+++.+|+...+..+.+. +...++.+.++++++++|++++|++.+|||+|+++|
T Consensus 743 ~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~----l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i 818 (852)
T TIGR03346 743 RAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKR----LAERKITLELSDAALDFLAEAGYDPVYGARPLKRAI 818 (852)
T ss_pred HhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHH----HHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHH
Confidence 5669999999999999999999999999999866555444 344678899999999999999999999999999999
Q ss_pred HHHHHHHHhcCc
Q 038067 434 ENILTEAMFEIP 445 (510)
Q Consensus 434 e~~l~~~l~~~~ 445 (510)
++.+.+++.+..
T Consensus 819 ~~~i~~~l~~~~ 830 (852)
T TIGR03346 819 QREIENPLAKKI 830 (852)
T ss_pred HHHHHHHHHHHH
Confidence 999999998653
No 14
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.96 E-value=3.9e-28 Score=277.06 Aligned_cols=281 Identities=22% Similarity=0.331 Sum_probs=206.0
Q ss_pred CccccccCCCCCCCCCCCCCCC----hHHHHhhhccccccchhhhhccchhhhhhhhhhhhhHHHHHHHHHHHHhhhhhh
Q 038067 53 SESETENGNRNRNSEGNIDLPT----PKEICKGLDEFVIGQERAKKSHIFCILVDMLVYVIGACCAVYNHYKRIYHSSLQ 128 (510)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~----~~el~~~L~~~ViGQ~~ak~~~~~~~~~~~~~~~~~l~~av~~~~~r~~~~~~~ 128 (510)
..+.+.++| ||+|+...... ...+++.|.+.|+||+.|++. ++.++......+...
T Consensus 535 ~i~~vv~~~--tgip~~~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~---------------l~~~i~~~~~gl~~~--- 594 (857)
T PRK10865 535 EIAEVLARW--TGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEA---------------VSNAIRRSRAGLSDP--- 594 (857)
T ss_pred HHHHHHHHH--HCCCchhhhhhHHHHHHHHHHHhCCeEeCCHHHHHH---------------HHHHHHHHHhcccCC---
Confidence 456779999 99999986543 456999999999999999999 776664221111100
Q ss_pred hhhhcccccccccccCCccCCCCCCCcchhhhccCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEecccccc----
Q 038067 129 KELVSDHLYVDSILGSGVKSGNCNVENDEIVELEKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALTQ---- 201 (510)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~~---- 201 (510)
..+..++||+||||||||++|++||+.+ +.+++.++|+++.+
T Consensus 595 -------------------------------~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~ 643 (857)
T PRK10865 595 -------------------------------NRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSV 643 (857)
T ss_pred -------------------------------CCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhH
Confidence 0133579999999999999999999988 46899999987742
Q ss_pred -------ccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeecc
Q 038067 202 -------AGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPI 274 (510)
Q Consensus 202 -------~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~ 274 (510)
+||+|++..+.++..++. .+.+||||||++++.+. +++.|+++|+.+.++
T Consensus 644 ~~LiG~~pgy~g~~~~g~l~~~v~~-------~p~~vLllDEieka~~~-------------v~~~Ll~ile~g~l~--- 700 (857)
T PRK10865 644 SRLVGAPPGYVGYEEGGYLTEAVRR-------RPYSVILLDEVEKAHPD-------------VFNILLQVLDDGRLT--- 700 (857)
T ss_pred HHHhCCCCcccccchhHHHHHHHHh-------CCCCeEEEeehhhCCHH-------------HHHHHHHHHhhCcee---
Confidence 467777655555554433 35689999999998765 899999999854443
Q ss_pred CCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhh
Q 038067 275 PDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVA 354 (510)
Q Consensus 275 ~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~ 354 (510)
+. ....++++|++||+|+|... + .+.++ |+.. ........++ +.++
T Consensus 701 -------d~--~gr~vd~rn~iiI~TSN~g~-~-~~~~~-------~~~~----------~~~~~~~~~~------~~~~ 746 (857)
T PRK10865 701 -------DG--QGRTVDFRNTVVIMTSNLGS-D-LIQER-------FGEL----------DYAHMKELVL------GVVS 746 (857)
T ss_pred -------cC--CceEEeecccEEEEeCCcch-H-HHHHh-------cccc----------chHHHHHHHH------HHHc
Confidence 11 12467889999999988531 1 11111 1110 0011111111 2245
Q ss_pred cCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHH
Q 038067 355 YGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLE 434 (510)
Q Consensus 355 ~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie 434 (510)
..|+|+|++|+|.++.|.||+.+++.+|+...+..+..++ ...++.+.++++++++|++++|++.+|||+|+++|+
T Consensus 747 ~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl----~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~ 822 (857)
T PRK10865 747 HNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRL----EERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQ 822 (857)
T ss_pred ccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHH----HhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHH
Confidence 6799999999999999999999999999998665554443 345778899999999999999999999999999999
Q ss_pred HHHHHHHhcCc
Q 038067 435 NILTEAMFEIP 445 (510)
Q Consensus 435 ~~l~~~l~~~~ 445 (510)
+.+.+++.+..
T Consensus 823 ~~i~~~la~~i 833 (857)
T PRK10865 823 QQIENPLAQQI 833 (857)
T ss_pred HHHHHHHHHHH
Confidence 99999888643
No 15
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.1e-26 Score=258.68 Aligned_cols=295 Identities=22% Similarity=0.259 Sum_probs=218.7
Q ss_pred CCCCccccccCCCCCCCCCCCCCC----ChHHHHhhhccccccchhhhhccchhhhhhhhhhhhhHHHHHHHHHHHHhhh
Q 038067 50 GIESESETENGNRNRNSEGNIDLP----TPKEICKGLDEFVIGQERAKKSHIFCILVDMLVYVIGACCAVYNHYKRIYHS 125 (510)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~el~~~L~~~ViGQ~~ak~~~~~~~~~~~~~~~~~l~~av~~~~~r~~~~ 125 (510)
++...+...++| +|+|+..... ....|.+.|.+.|+||++|+++ ++.||..........
T Consensus 526 ~~~~i~~~~s~~--tgip~~~~~~~e~~~l~~L~~~L~~~V~gQ~eAv~a---------------Ia~AI~~sr~gl~~~ 588 (898)
T KOG1051|consen 526 GESDISEVVSRW--TGIPVDRLAEAEAERLKKLEERLHERVIGQDEAVAA---------------IAAAIRRSRAGLKDP 588 (898)
T ss_pred Cccchhhhhhhh--cCCchhhhhhhHHHHHHHHHHHHHhhccchHHHHHH---------------HHHHHHhhhcccCCC
Confidence 555777889999 9999998654 5567999999999999999999 998886322211110
Q ss_pred hhhhhhhcccccccccccCCccCCCCCCCcchhhhccCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccc--
Q 038067 126 SLQKELVSDHLYVDSILGSGVKSGNCNVENDEIVELEKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALT-- 200 (510)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~-- 200 (510)
.+...++|.||+|+|||.||++||..+ ...|+++|++++.
T Consensus 589 -----------------------------------~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~ev 633 (898)
T KOG1051|consen 589 -----------------------------------NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEV 633 (898)
T ss_pred -----------------------------------CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhh
Confidence 156789999999999999999999999 4589999999733
Q ss_pred ------cccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeecc
Q 038067 201 ------QAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPI 274 (510)
Q Consensus 201 ------~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~ 274 (510)
.+||+|++..+.+++.++.. +.+|||||||||+... +++.|++++|.
T Consensus 634 skligsp~gyvG~e~gg~Lteavrrr-------P~sVVLfdeIEkAh~~-------------v~n~llq~lD~------- 686 (898)
T KOG1051|consen 634 SKLIGSPPGYVGKEEGGQLTEAVKRR-------PYSVVLFEEIEKAHPD-------------VLNILLQLLDR------- 686 (898)
T ss_pred hhccCCCcccccchhHHHHHHHHhcC-------CceEEEEechhhcCHH-------------HHHHHHHHHhc-------
Confidence 46899999888998887766 5589999999996544 99999999974
Q ss_pred CCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhh
Q 038067 275 PDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVA 354 (510)
Q Consensus 275 ~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~ 354 (510)
|+.++..++ .|+..|+|||||+|... +.+... .. ..++-...... ..... .......+.++
T Consensus 687 ---GrltDs~Gr--~Vd~kN~I~IMTsn~~~-~~i~~~-~~--~~~~l~~~~~~----~~~~~------~~k~~v~~~~~ 747 (898)
T KOG1051|consen 687 ---GRLTDSHGR--EVDFKNAIFIMTSNVGS-SAIAND-AS--LEEKLLDMDEK----RGSYR------LKKVQVSDAVR 747 (898)
T ss_pred ---CccccCCCc--EeeccceEEEEecccch-Hhhhcc-cc--cccccccchhh----hhhhh------hhhhhhhhhhh
Confidence 444455554 67888999999887321 111111 00 01111100000 00000 01112234455
Q ss_pred ----cCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHH
Q 038067 355 ----YGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLR 430 (510)
Q Consensus 355 ----~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~ 430 (510)
..|+|||++|++.++.|.+++.+++.+|+..++......+ ...++.+.+++.+..+++...|+..+|||+|+
T Consensus 748 ~~~~~~~r~Ef~nrid~i~lf~~l~~~~~~~i~~~~~~e~~~r~----~~~~~~~~v~~~~~~~v~~~~~d~~ygAr~ik 823 (898)
T KOG1051|consen 748 IYNKQFFRKEFLNRIDELDLNLPLDRDELIEIVNKQLTEIEKRL----EERELLLLVTDRVDDKVLFKGYDFDYGARPIK 823 (898)
T ss_pred cccccccChHHhcccceeeeecccchhhHhhhhhhHHHHHHHHh----hhhHHHHHHHHHHHhhhhhcCcChHHHhhHHH
Confidence 7799999999999999999999999999987665554444 33457788999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCcC
Q 038067 431 ALLENILTEAMFEIPE 446 (510)
Q Consensus 431 ~~ie~~l~~~l~~~~~ 446 (510)
+.|++.+.+.+.....
T Consensus 824 r~i~~~~~~~la~~~l 839 (898)
T KOG1051|consen 824 RSIEERFENRLAEALL 839 (898)
T ss_pred HHHHHHHHHHHhhhhe
Confidence 9999999999886553
No 16
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.91 E-value=5.9e-25 Score=205.85 Aligned_cols=166 Identities=40% Similarity=0.610 Sum_probs=127.2
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCC----CeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcch
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNV----PFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEV 237 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~----p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEi 237 (510)
|..++||+||+|||||++|++||+.+.. +++.+||+++++ +.+....+..++..++..+...+.+|||||||
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~----~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEi 77 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE----GDDVESSVSKLLGSPPGYVGAEEGGVVLLDEI 77 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS----HHHCSCHCHHHHHHTTCHHHHHHHTEEEEETG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc----cchHHhhhhhhhhcccceeeccchhhhhhHHH
Confidence 5679999999999999999999999985 999999999986 33345556677777777778888899999999
Q ss_pred hhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccC
Q 038067 238 DKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDS 317 (510)
Q Consensus 238 dkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~ 317 (510)
||+.++ .+.+++++++.||+.||++||++.++- . .+ ..|+++|++|||||||.+.......+..
T Consensus 78 dKa~~~--~~~~~~v~~~~V~~~LL~~le~g~~~d----~------~g--~~vd~~n~ifI~Tsn~~~~~~~~~~~~~-- 141 (171)
T PF07724_consen 78 DKAHPS--NSGGADVSGEGVQNSLLQLLEGGTLTD----S------YG--RTVDTSNIIFIMTSNFGAEEIIDASRSG-- 141 (171)
T ss_dssp GGCSHT--TTTCSHHHHHHHHHHHHHHHHHSEEEE----T------TC--CEEEGTTEEEEEEESSSTHHHHHCHHHC--
T ss_pred hhcccc--ccccchhhHHHHHHHHHHHhcccceec----c------cc--eEEEeCCceEEEecccccchhhhhhccc--
Confidence 998875 567899999999999999999777752 1 11 4799999999999999876655432211
Q ss_pred CCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCce
Q 038067 318 SIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPIL 368 (510)
Q Consensus 318 ~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~i 368 (510)
............++++++|+|||++|||.|
T Consensus 142 ---------------------~~~~~~~~~~~~~~~~~~f~pEf~~Ri~~i 171 (171)
T PF07724_consen 142 ---------------------EAIEQEQEEQIRDLVEYGFRPEFLGRIDVI 171 (171)
T ss_dssp ---------------------TCCHHHHCHHHHHHHHHTS-HHHHTTSSEE
T ss_pred ---------------------cccHHHHHHHHHHHHHcCCCHHHHccCCcC
Confidence 000111112235678899999999999975
No 17
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=4.7e-23 Score=221.77 Aligned_cols=248 Identities=23% Similarity=0.323 Sum_probs=194.7
Q ss_pred CCCChHHHHhhhccccccchhhhhccchhhhhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhhcccccccccccCCccCCC
Q 038067 71 DLPTPKEICKGLDEFVIGQERAKKSHIFCILVDMLVYVIGACCAVYNHYKRIYHSSLQKELVSDHLYVDSILGSGVKSGN 150 (510)
Q Consensus 71 ~~~~~~el~~~L~~~ViGQ~~ak~~~~~~~~~~~~~~~~~l~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 150 (510)
+....++..+.||+-..|.+++|+. +. ++..-.....
T Consensus 310 ~~~Dl~~a~~iLd~dHYGLekVKeR---------------Il----EyLAV~~l~~------------------------ 346 (782)
T COG0466 310 DKLDLKKAEKILDKDHYGLEKVKER---------------IL----EYLAVQKLTK------------------------ 346 (782)
T ss_pred hhhhHHHHHHHhcccccCchhHHHH---------------HH----HHHHHHHHhc------------------------
Confidence 4557888999999999999999998 22 1111110000
Q ss_pred CCCCcchhhhccCceEEEEccCCChHHHHHHHHHHHhCCCeEEEecccccc--------ccccccchhhHHHHHHHhhch
Q 038067 151 CNVENDEIVELEKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQ--------AGYVGEDAESVLYKLLAAADF 222 (510)
Q Consensus 151 ~~~~~~~~~~~~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~--------~gy~G~~~~~~l~~l~~~~~~ 222 (510)
...+.-++|+||||+|||+|++.+|+.++++|++++...+.+ ..|+|.-++..++.+.+..
T Consensus 347 ---------~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~-- 415 (782)
T COG0466 347 ---------KLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAG-- 415 (782)
T ss_pred ---------cCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhC--
Confidence 013356999999999999999999999999999999886653 2589998877777665443
Q ss_pred hHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCC
Q 038067 223 DVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGA 302 (510)
Q Consensus 223 ~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~ 302 (510)
..+.|++|||||||..+.. | ....+||.+|| |+++..+.+.+-.+.+|.|+++||||+|
T Consensus 416 ----~~NPv~LLDEIDKm~ss~r--------G-DPaSALLEVLD--------PEQN~~F~DhYLev~yDLS~VmFiaTAN 474 (782)
T COG0466 416 ----VKNPVFLLDEIDKMGSSFR--------G-DPASALLEVLD--------PEQNNTFSDHYLEVPYDLSKVMFIATAN 474 (782)
T ss_pred ----CcCCeEEeechhhccCCCC--------C-ChHHHHHhhcC--------HhhcCchhhccccCccchhheEEEeecC
Confidence 4678999999999985421 1 26899999999 4788888888888889999999999998
Q ss_pred ccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHH
Q 038067 303 FVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQV 382 (510)
Q Consensus 303 ~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~I 382 (510)
.- ..++++|++|+.+| .+..++++|..+|
T Consensus 475 sl--------------------------------------------------~tIP~PLlDRMEiI-~lsgYt~~EKl~I 503 (782)
T COG0466 475 SL--------------------------------------------------DTIPAPLLDRMEVI-RLSGYTEDEKLEI 503 (782)
T ss_pred cc--------------------------------------------------ccCChHHhcceeee-eecCCChHHHHHH
Confidence 21 12677999999765 9999999999999
Q ss_pred HhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHHhcCcCCC
Q 038067 383 LMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETK 448 (510)
Q Consensus 383 l~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~~~~~~~ 448 (510)
++++ ++.+..+.......++.++++|+..|.+. |..+.|.|+|++.|.+++..+..++...+
T Consensus 504 Ak~~---LiPk~~~~~gL~~~el~i~d~ai~~iI~~-YTREAGVR~LeR~i~ki~RK~~~~i~~~~ 565 (782)
T COG0466 504 AKRH---LIPKQLKEHGLKKGELTITDEAIKDIIRY-YTREAGVRNLEREIAKICRKAAKKILLKK 565 (782)
T ss_pred HHHh---cchHHHHHcCCCccceeecHHHHHHHHHH-HhHhhhhhHHHHHHHHHHHHHHHHHHhcC
Confidence 9974 44444444344556799999999999998 99999999999999999999888776543
No 18
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.90 E-value=2.1e-22 Score=227.42 Aligned_cols=244 Identities=18% Similarity=0.269 Sum_probs=179.2
Q ss_pred CCCChHHHHhhhccccccchhhhhccchhhhhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhhcccccccccccCCccCCC
Q 038067 71 DLPTPKEICKGLDEFVIGQERAKKSHIFCILVDMLVYVIGACCAVYNHYKRIYHSSLQKELVSDHLYVDSILGSGVKSGN 150 (510)
Q Consensus 71 ~~~~~~el~~~L~~~ViGQ~~ak~~~~~~~~~~~~~~~~~l~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 150 (510)
+.....+.++.|++.++|++++|+. +...+... ++...
T Consensus 309 ~~~~~~~~~~~l~~~~~g~~~vK~~---------------i~~~l~~~-~~~~~-------------------------- 346 (784)
T PRK10787 309 VKKDLRQAQEILDTDHYGLERVKDR---------------ILEYLAVQ-SRVNK-------------------------- 346 (784)
T ss_pred ccccHHHHHHHhhhhccCHHHHHHH---------------HHHHHHHH-Hhccc--------------------------
Confidence 4457888999999999999999998 43222111 00000
Q ss_pred CCCCcchhhhccCceEEEEccCCChHHHHHHHHHHHhCCCeEEEecccccc--------ccccccchhhHHHHHHHhhch
Q 038067 151 CNVENDEIVELEKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQ--------AGYVGEDAESVLYKLLAAADF 222 (510)
Q Consensus 151 ~~~~~~~~~~~~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~--------~gy~G~~~~~~l~~l~~~~~~ 222 (510)
..+..++|+||||||||++++.+|+.++.++++++++...+ ..|.|...+..+ ..+..+
T Consensus 347 ----------~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~-~~l~~~-- 413 (784)
T PRK10787 347 ----------IKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLI-QKMAKV-- 413 (784)
T ss_pred ----------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHH-HHHHhc--
Confidence 03357999999999999999999999999999998876542 136666544333 333322
Q ss_pred hHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCC
Q 038067 223 DVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGA 302 (510)
Q Consensus 223 ~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~ 302 (510)
...+.||||||||++.+.... ..+++|+++||. .+.....+.+-.+.+|.++++||||+|
T Consensus 414 ---~~~~~villDEidk~~~~~~g---------~~~~aLlevld~--------~~~~~~~d~~~~~~~dls~v~~i~TaN 473 (784)
T PRK10787 414 ---GVKNPLFLLDEIDKMSSDMRG---------DPASALLEVLDP--------EQNVAFSDHYLEVDYDLSDVMFVATSN 473 (784)
T ss_pred ---CCCCCEEEEEChhhcccccCC---------CHHHHHHHHhcc--------ccEEEEecccccccccCCceEEEEcCC
Confidence 124579999999998754211 268999999982 222223334444578999999999988
Q ss_pred ccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHH
Q 038067 303 FVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQV 382 (510)
Q Consensus 303 ~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~I 382 (510)
+. .++|+|++|+. +|.|.+|+.+++.+|
T Consensus 474 ~~---------------------------------------------------~i~~aLl~R~~-ii~~~~~t~eek~~I 501 (784)
T PRK10787 474 SM---------------------------------------------------NIPAPLLDRME-VIRLSGYTEDEKLNI 501 (784)
T ss_pred CC---------------------------------------------------CCCHHHhccee-eeecCCCCHHHHHHH
Confidence 21 27899999996 579999999999999
Q ss_pred HhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHHhcCc
Q 038067 383 LMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIP 445 (510)
Q Consensus 383 l~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~~~~ 445 (510)
+++.+ ..+..+.....+..+.++++++++|++ .|++..|||+|++.|++++...+.+..
T Consensus 502 a~~~L---~~k~~~~~~l~~~~l~i~~~ai~~ii~-~yt~e~GaR~LeR~I~~i~r~~l~~~~ 560 (784)
T PRK10787 502 AKRHL---LPKQIERNALKKGELTVDDSAIIGIIR-YYTREAGVRSLEREISKLCRKAVKQLL 560 (784)
T ss_pred HHHhh---hHHHHHHhCCCCCeEEECHHHHHHHHH-hCCcccCCcHHHHHHHHHHHHHHHHHH
Confidence 99854 322222234456689999999999998 799999999999999999999988754
No 19
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.89 E-value=3.8e-22 Score=226.76 Aligned_cols=253 Identities=22% Similarity=0.292 Sum_probs=179.4
Q ss_pred CCCCCCC---CCCChHHHHhhhccccccchhhhhccchhhhhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhhcccccccc
Q 038067 64 RNSEGNI---DLPTPKEICKGLDEFVIGQERAKKSHIFCILVDMLVYVIGACCAVYNHYKRIYHSSLQKELVSDHLYVDS 140 (510)
Q Consensus 64 ~~~~~~~---~~~~~~el~~~L~~~ViGQ~~ak~~~~~~~~~~~~~~~~~l~~av~~~~~r~~~~~~~~~~~~~~~~~~~ 140 (510)
+++|... +....+.+++.|++.++||+.+|+. +...+.... ...
T Consensus 297 ~~ip~~~~~~~~~~~~~~~~~l~~~~~G~~~~k~~---------------i~~~~~~~~--~~~---------------- 343 (775)
T TIGR00763 297 TDLPWGKYSKENLDLKRAKEILDEDHYGLKKVKER---------------ILEYLAVQK--LRG---------------- 343 (775)
T ss_pred HCCCCcccccchhhHHHHHHHhhhhcCChHHHHHH---------------HHHHHHHHH--hhc----------------
Confidence 4455443 2345778899999999999999998 443222110 000
Q ss_pred cccCCccCCCCCCCcchhhhccCceEEEEccCCChHHHHHHHHHHHhCCCeEEEecccccc--------ccccccchhhH
Q 038067 141 ILGSGVKSGNCNVENDEIVELEKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQ--------AGYVGEDAESV 212 (510)
Q Consensus 141 ~~~~~~~~g~~~~~~~~~~~~~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~--------~gy~G~~~~~~ 212 (510)
...+.+++|+||||||||++|+++|+.++.+++.++++.+.. ..|+|...+.
T Consensus 344 -------------------~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~- 403 (775)
T TIGR00763 344 -------------------KMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGR- 403 (775)
T ss_pred -------------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCch-
Confidence 002347999999999999999999999999999998765432 2577766433
Q ss_pred HHHHHHhhchhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEc
Q 038067 213 LYKLLAAADFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDT 292 (510)
Q Consensus 213 l~~l~~~~~~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~t 292 (510)
+...+..+ ...+.||||||||++.+... + ...++|+++||. .+.....+..-...++.
T Consensus 404 i~~~l~~~-----~~~~~villDEidk~~~~~~--------~-~~~~aLl~~ld~--------~~~~~f~d~~~~~~~d~ 461 (775)
T TIGR00763 404 IIQGLKKA-----KTKNPLFLLDEIDKIGSSFR--------G-DPASALLEVLDP--------EQNNAFSDHYLDVPFDL 461 (775)
T ss_pred HHHHHHHh-----CcCCCEEEEechhhcCCccC--------C-CHHHHHHHhcCH--------HhcCccccccCCceecc
Confidence 33444332 12446999999999975321 0 257899999982 11222222223346788
Q ss_pred CCceeecCCCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecC
Q 038067 293 KDILFICGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLS 372 (510)
Q Consensus 293 snilfI~tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~ 372 (510)
++++||+|+|.. ..++|+|++|+. +|.|+
T Consensus 462 s~v~~I~TtN~~--------------------------------------------------~~i~~~L~~R~~-vi~~~ 490 (775)
T TIGR00763 462 SKVIFIATANSI--------------------------------------------------DTIPRPLLDRME-VIELS 490 (775)
T ss_pred CCEEEEEecCCc--------------------------------------------------hhCCHHHhCCee-EEecC
Confidence 999999998821 137889999996 67999
Q ss_pred CCCHHHHHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHHhcCcC
Q 038067 373 ALNEDQLVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPE 446 (510)
Q Consensus 373 ~Ls~eel~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~~~~~ 446 (510)
+++.+++.+|++..+ ..+..+........+.++++++.+|++ .|+...|+|+|++.+++++..+..++..
T Consensus 491 ~~~~~e~~~I~~~~l---~~~~~~~~~l~~~~~~~~~~~l~~i~~-~~~~e~g~R~l~r~i~~~~~~~~~~~~~ 560 (775)
T TIGR00763 491 GYTEEEKLEIAKKYL---IPKALEDHGLKPDELKITDEALLLLIK-YYTREAGVRNLERQIEKICRKAAVKLVE 560 (775)
T ss_pred CCCHHHHHHHHHHHH---HHHHHHHcCCCcceEEECHHHHHHHHH-hcChhcCChHHHHHHHHHHHHHHHHHHh
Confidence 999999999998643 333333222233468899999999999 5999999999999999999999887664
No 20
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=2.9e-22 Score=214.51 Aligned_cols=209 Identities=25% Similarity=0.427 Sum_probs=173.3
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccc--------cccccchhhHHHHHHHhhchhHHHhcCcEEE
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQA--------GYVGEDAESVLYKLLAAADFDVEAAQRGIVY 233 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~--------gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~ 233 (510)
.+.-++|+||||+|||++|+.||+.+|+.|++++...+++. .|+|.-.+++++.+-.-. ..+.+++
T Consensus 437 qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~------t~NPliL 510 (906)
T KOG2004|consen 437 QGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVK------TENPLIL 510 (906)
T ss_pred CCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhC------CCCceEE
Confidence 45679999999999999999999999999999998776642 589998888777764432 4678999
Q ss_pred EcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhh
Q 038067 234 IDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISER 313 (510)
Q Consensus 234 iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~ 313 (510)
||||||+...+.. ..-.+||.+|| |+++..+.+.+-.+.+|.|.++||||+|..
T Consensus 511 iDEvDKlG~g~qG---------DPasALLElLD--------PEQNanFlDHYLdVp~DLSkVLFicTAN~i--------- 564 (906)
T KOG2004|consen 511 IDEVDKLGSGHQG---------DPASALLELLD--------PEQNANFLDHYLDVPVDLSKVLFICTANVI--------- 564 (906)
T ss_pred eehhhhhCCCCCC---------ChHHHHHHhcC--------hhhccchhhhccccccchhheEEEEecccc---------
Confidence 9999999843211 26899999999 478888888888899999999999999822
Q ss_pred cccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHH
Q 038067 314 RQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQ 393 (510)
Q Consensus 314 ~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~ 393 (510)
..++|+|++|+..| .+..+..+|...|.++ .++.+
T Consensus 565 -----------------------------------------dtIP~pLlDRMEvI-elsGYv~eEKv~IA~~---yLip~ 599 (906)
T KOG2004|consen 565 -----------------------------------------DTIPPPLLDRMEVI-ELSGYVAEEKVKIAER---YLIPQ 599 (906)
T ss_pred -----------------------------------------ccCChhhhhhhhee-eccCccHHHHHHHHHH---hhhhH
Confidence 12788999999765 9999999999999997 56666
Q ss_pred HHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHHhcCcCCC
Q 038067 394 YKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETK 448 (510)
Q Consensus 394 ~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~~~~~~~ 448 (510)
..+........+.++++|+..|.++ |+.+.|.|.|++-|++++..+.+.+.+..
T Consensus 600 a~~~~gl~~e~v~is~~al~~lI~~-YcrEaGVRnLqk~iekI~Rk~Al~vv~~~ 653 (906)
T KOG2004|consen 600 ALKDCGLKPEQVKISDDALLALIER-YCREAGVRNLQKQIEKICRKVALKVVEGE 653 (906)
T ss_pred HHHHcCCCHHhcCccHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6665555566788999999999987 99999999999999999999888765543
No 21
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.88 E-value=1.6e-21 Score=187.05 Aligned_cols=177 Identities=28% Similarity=0.431 Sum_probs=118.7
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
+..|++||||||+|||+||+.+|+.++.+|..+++..+... +-+..++... ..+.|||||||+++.
T Consensus 49 ~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~--------~dl~~il~~l------~~~~ILFIDEIHRln 114 (233)
T PF05496_consen 49 ALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKA--------GDLAAILTNL------KEGDILFIDEIHRLN 114 (233)
T ss_dssp ---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SC--------HHHHHHHHT--------TT-EEEECTCCC--
T ss_pred CcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhH--------HHHHHHHHhc------CCCcEEEEechhhcc
Confidence 34689999999999999999999999999998888665432 1122222221 256799999999998
Q ss_pred hhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCc
Q 038067 242 KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGF 321 (510)
Q Consensus 242 ~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf 321 (510)
+. +|+.||.+||++.+++-+ ..| +..+++.++..++.+|.+++-.
T Consensus 115 k~-------------~qe~LlpamEd~~idiii-G~g----~~ar~~~~~l~~FTligATTr~----------------- 159 (233)
T PF05496_consen 115 KA-------------QQEILLPAMEDGKIDIII-GKG----PNARSIRINLPPFTLIGATTRA----------------- 159 (233)
T ss_dssp HH-------------HHHHHHHHHHCSEEEEEB-SSS----SS-BEEEEE----EEEEEESSG-----------------
T ss_pred HH-------------HHHHHHHHhccCeEEEEe-ccc----cccceeeccCCCceEeeeeccc-----------------
Confidence 87 799999999988887653 222 3345677888888777665511
Q ss_pred CcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHhcC
Q 038067 322 GAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFSMN 401 (510)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~~~ 401 (510)
..+.++|++||..+..+..++.+|+.+|+++ ...
T Consensus 160 ---------------------------------g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r-------------~a~ 193 (233)
T PF05496_consen 160 ---------------------------------GLLSSPLRDRFGIVLRLEFYSEEELAKIVKR-------------SAR 193 (233)
T ss_dssp ---------------------------------CCTSHCCCTTSSEEEE----THHHHHHHHHH-------------CCH
T ss_pred ---------------------------------cccchhHHhhcceecchhcCCHHHHHHHHHH-------------HHH
Confidence 1267799999999999999999999999975 334
Q ss_pred CceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHH
Q 038067 402 NVKLHFTDDALRLIAKKAMAKNTGARGLRALLENI 436 (510)
Q Consensus 402 ~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~ 436 (510)
-..+.+++++..+||+.+ .+..|-..++++++
T Consensus 194 ~l~i~i~~~~~~~Ia~rs---rGtPRiAnrll~rv 225 (233)
T PF05496_consen 194 ILNIEIDEDAAEEIARRS---RGTPRIANRLLRRV 225 (233)
T ss_dssp CTT-EE-HHHHHHHHHCT---TTSHHHHHHHHHHH
T ss_pred HhCCCcCHHHHHHHHHhc---CCChHHHHHHHHHH
Confidence 567889999999999986 55577777766653
No 22
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.87 E-value=2.4e-21 Score=195.81 Aligned_cols=239 Identities=20% Similarity=0.284 Sum_probs=164.5
Q ss_pred CCCChHHHHhhhccccccchhhhhccchhhhhhhhhhhhhHHHHH-HHHHHHHhhhhhhhhhhcccccccccccCCccCC
Q 038067 71 DLPTPKEICKGLDEFVIGQERAKKSHIFCILVDMLVYVIGACCAV-YNHYKRIYHSSLQKELVSDHLYVDSILGSGVKSG 149 (510)
Q Consensus 71 ~~~~~~el~~~L~~~ViGQ~~ak~~~~~~~~~~~~~~~~~l~~av-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g 149 (510)
..+..+++.+.|++.++|++.+|+. +...+ +..+.+.... .|...
T Consensus 9 ~~~~~~~~~~~l~~~l~Gl~~vk~~---------------i~e~~~~~~~~~~r~~------------------~g~~~- 54 (284)
T TIGR02880 9 EASGITEVLDQLDRELIGLKPVKTR---------------IREIAALLLVERLRQR------------------LGLAS- 54 (284)
T ss_pred hhccHHHHHHHHHHhccCHHHHHHH---------------HHHHHHHHHHHHHHHH------------------hCCCc-
Confidence 3457789999999999999999998 32211 1112222111 01100
Q ss_pred CCCCCcchhhhccCceEEEEccCCChHHHHHHHHHHHhC-------CCeEEEeccccccccccccchhhHHHHHHHhhch
Q 038067 150 NCNVENDEIVELEKSNVLLMGPTGSGKTLLAKTLARIVN-------VPFTITDATALTQAGYVGEDAESVLYKLLAAADF 222 (510)
Q Consensus 150 ~~~~~~~~~~~~~~~~vLL~GPpGtGKT~lAr~lA~~l~-------~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~ 222 (510)
..+..+++|+||||||||++|+++|+.+. .+++.+++.++.. .|+|+.. ..+..++++
T Consensus 55 ----------~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~-~~~g~~~-~~~~~~~~~--- 119 (284)
T TIGR02880 55 ----------AAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVG-QYIGHTA-PKTKEILKR--- 119 (284)
T ss_pred ----------CCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhH-hhcccch-HHHHHHHHH---
Confidence 01446899999999999999999998872 3799999888764 5888763 334444443
Q ss_pred hHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCC
Q 038067 223 DVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGA 302 (510)
Q Consensus 223 ~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~ 302 (510)
+.++||||||++.+...+. .++ .+..+++.|++.|+.. ..++++|++|+
T Consensus 120 ----a~~gvL~iDEi~~L~~~~~---~~~-~~~~~~~~Ll~~le~~-----------------------~~~~~vI~a~~ 168 (284)
T TIGR02880 120 ----AMGGVLFIDEAYYLYRPDN---ERD-YGQEAIEILLQVMENQ-----------------------RDDLVVILAGY 168 (284)
T ss_pred ----ccCcEEEEechhhhccCCC---ccc-hHHHHHHHHHHHHhcC-----------------------CCCEEEEEeCC
Confidence 4679999999999853211 112 2345899999999721 14567777776
Q ss_pred ccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHH
Q 038067 303 FVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQV 382 (510)
Q Consensus 303 ~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~I 382 (510)
...++.+ ..+.|+|.+||+..|.|++|+.+|+..|
T Consensus 169 ~~~~~~~---------------------------------------------~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 169 KDRMDSF---------------------------------------------FESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred cHHHHHH---------------------------------------------HhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 3222211 1268999999999999999999999999
Q ss_pred HhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhh-----CCCCCChhHHHHHHHHHHHHHHhcCcCC
Q 038067 383 LMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKA-----MAKNTGARGLRALLENILTEAMFEIPET 447 (510)
Q Consensus 383 l~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~-----~~~~~gaR~L~~~ie~~l~~~l~~~~~~ 447 (510)
+...+ ++. ...++++++..+.++. ..|.+++|.|++++++.+..+...+...
T Consensus 204 ~~~~l----~~~---------~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~~~~r~~~~ 260 (284)
T TIGR02880 204 AGLML----KEQ---------QYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARLRQANRLFCD 260 (284)
T ss_pred HHHHH----HHh---------ccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHhcC
Confidence 98532 221 2346788888877641 1566779999999999999988877654
No 23
>CHL00181 cbbX CbbX; Provisional
Probab=99.87 E-value=3.6e-21 Score=194.59 Aligned_cols=192 Identities=23% Similarity=0.318 Sum_probs=135.4
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh-------CCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEE
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV-------NVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYI 234 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l-------~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~i 234 (510)
++.|++|+||||||||++|+++|+.+ ..+++.++++++.. .|+|+.. .....++.. +.++||||
T Consensus 58 ~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~-~~~g~~~-~~~~~~l~~-------a~ggVLfI 128 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVG-QYIGHTA-PKTKEVLKK-------AMGGVLFI 128 (287)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHH-HHhccch-HHHHHHHHH-------ccCCEEEE
Confidence 34689999999999999999999986 23688889888763 4777653 233444433 46799999
Q ss_pred cchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhc
Q 038067 235 DEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERR 314 (510)
Q Consensus 235 DEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~ 314 (510)
||++.+...+. .++ .+..+++.|+++|+. ...++++|++|+...|+.+.
T Consensus 129 DE~~~l~~~~~---~~~-~~~e~~~~L~~~me~-----------------------~~~~~~vI~ag~~~~~~~~~---- 177 (287)
T CHL00181 129 DEAYYLYKPDN---ERD-YGSEAIEILLQVMEN-----------------------QRDDLVVIFAGYKDRMDKFY---- 177 (287)
T ss_pred EccchhccCCC---ccc-hHHHHHHHHHHHHhc-----------------------CCCCEEEEEeCCcHHHHHHH----
Confidence 99999864321 122 234689999999972 12456778877633222221
Q ss_pred ccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHH
Q 038067 315 QDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQY 394 (510)
Q Consensus 315 ~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~ 394 (510)
.++|+|.+||+.+|.|++++.+++.+|+...+.. .
T Consensus 178 -----------------------------------------~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~----~ 212 (287)
T CHL00181 178 -----------------------------------------ESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEE----Q 212 (287)
T ss_pred -----------------------------------------hcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHH----h
Confidence 1579999999999999999999999999863322 1
Q ss_pred HHHHhcCCceeeeCHHHHH----HHHHhhCCCCCC-hhHHHHHHHHHHHHHHhcCcCC
Q 038067 395 KKMFSMNNVKLHFTDDALR----LIAKKAMAKNTG-ARGLRALLENILTEAMFEIPET 447 (510)
Q Consensus 395 ~~~~~~~~~~l~is~~al~----~La~~~~~~~~g-aR~L~~~ie~~l~~~l~~~~~~ 447 (510)
...+++++.. ++.+......+| +|.+++++++.+..+..++...
T Consensus 213 ---------~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~~~~r~~~~ 261 (287)
T CHL00181 213 ---------QYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARMRQANRIFES 261 (287)
T ss_pred ---------cCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHHHHcC
Confidence 2234555444 444444445555 9999999999999988877655
No 24
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.87 E-value=8.1e-22 Score=190.03 Aligned_cols=188 Identities=30% Similarity=0.446 Sum_probs=136.7
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
.|+|+||+||||||||++|++||+..+.|++.+.++++... |+|.. ...+++++..+ ++..+||+||||+|.+.
T Consensus 150 APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGe-hVGdg-ar~Ihely~rA----~~~aPcivFiDE~DAia 223 (368)
T COG1223 150 APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGE-HVGDG-ARRIHELYERA----RKAAPCIVFIDELDAIA 223 (368)
T ss_pred CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHH-HhhhH-HHHHHHHHHHH----HhcCCeEEEehhhhhhh
Confidence 77999999999999999999999999999999999999854 89986 67889998886 67899999999999998
Q ss_pred hhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCc
Q 038067 242 KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGF 321 (510)
Q Consensus 242 ~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf 321 (510)
-.+..+.-|..-. ++.++||.-|||-. .-..+++|+++|-++
T Consensus 224 LdRryQelRGDVs-EiVNALLTelDgi~---------------------eneGVvtIaaTN~p~---------------- 265 (368)
T COG1223 224 LDRRYQELRGDVS-EIVNALLTELDGIK---------------------ENEGVVTIAATNRPE---------------- 265 (368)
T ss_pred hhhhHHHhcccHH-HHHHHHHHhccCcc---------------------cCCceEEEeecCChh----------------
Confidence 5543332222222 48999999998621 123466777777221
Q ss_pred CcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHhcC
Q 038067 322 GAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFSMN 401 (510)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~~~ 401 (510)
-+.|++++||..-|.|.-++.++...|++. |.+.|
T Consensus 266 ----------------------------------~LD~aiRsRFEeEIEF~LP~~eEr~~ile~--------y~k~~--- 300 (368)
T COG1223 266 ----------------------------------LLDPAIRSRFEEEIEFKLPNDEERLEILEY--------YAKKF--- 300 (368)
T ss_pred ----------------------------------hcCHHHHhhhhheeeeeCCChHHHHHHHHH--------HHHhC---
Confidence 278899999999999999999999999975 22221
Q ss_pred CceeeeCHHHHHHHHHhhCCCCCChhHHH-HHHHHHHHHHHhc
Q 038067 402 NVKLHFTDDALRLIAKKAMAKNTGARGLR-ALLENILTEAMFE 443 (510)
Q Consensus 402 ~~~l~is~~al~~La~~~~~~~~gaR~L~-~~ie~~l~~~l~~ 443 (510)
...+.. . +++++.. ..++..|.++ +++...+..++.+
T Consensus 301 Plpv~~--~-~~~~~~~--t~g~SgRdikekvlK~aLh~Ai~e 338 (368)
T COG1223 301 PLPVDA--D-LRYLAAK--TKGMSGRDIKEKVLKTALHRAIAE 338 (368)
T ss_pred CCcccc--C-HHHHHHH--hCCCCchhHHHHHHHHHHHHHHHh
Confidence 233333 3 6667664 3455567653 3344444444443
No 25
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.86 E-value=1e-20 Score=188.99 Aligned_cols=192 Identities=18% Similarity=0.350 Sum_probs=138.0
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh-------CCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEE
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV-------NVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYI 234 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l-------~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~i 234 (510)
...|++|+||||||||++|+++|+.+ ..+++.++++++.. .|+|+. ...+..++.. +.++||||
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~-~~~g~~-~~~~~~~~~~-------a~~~VL~I 111 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLVG-EYIGHT-AQKTREVIKK-------ALGGVLFI 111 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhhh-hhccch-HHHHHHHHHh-------ccCCEEEE
Confidence 44689999999999999999999876 23788888888874 477775 3444555544 35789999
Q ss_pred cchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhc
Q 038067 235 DEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERR 314 (510)
Q Consensus 235 DEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~ 314 (510)
||+|.+.... ....+...++.|++.|+. ...++++|++|+..+++.+.
T Consensus 112 DE~~~L~~~~-----~~~~~~~~i~~Ll~~~e~-----------------------~~~~~~vila~~~~~~~~~~---- 159 (261)
T TIGR02881 112 DEAYSLARGG-----EKDFGKEAIDTLVKGMED-----------------------NRNEFVLILAGYSDEMDYFL---- 159 (261)
T ss_pred echhhhccCC-----ccchHHHHHHHHHHHHhc-----------------------cCCCEEEEecCCcchhHHHH----
Confidence 9999986321 111234578899999972 12345667776633222211
Q ss_pred ccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHH
Q 038067 315 QDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQY 394 (510)
Q Consensus 315 ~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~ 394 (510)
.+.|+|.+||+..|.|++++.+++.+|+...+ .
T Consensus 160 -----------------------------------------~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~----~-- 192 (261)
T TIGR02881 160 -----------------------------------------SLNPGLRSRFPISIDFPDYTVEELMEIAERMV----K-- 192 (261)
T ss_pred -----------------------------------------hcChHHHhccceEEEECCCCHHHHHHHHHHHH----H--
Confidence 26789999999999999999999999997522 1
Q ss_pred HHHHhcCCceeeeCHHHHHHHHHhh-------CCCCCChhHHHHHHHHHHHHHHhcCcCCC
Q 038067 395 KKMFSMNNVKLHFTDDALRLIAKKA-------MAKNTGARGLRALLENILTEAMFEIPETK 448 (510)
Q Consensus 395 ~~~~~~~~~~l~is~~al~~La~~~-------~~~~~gaR~L~~~ie~~l~~~l~~~~~~~ 448 (510)
.....++++++.+|++.. -...+++|.++++++..+.++...+....
T Consensus 193 -------~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a~~~~~~r~~~~~ 246 (261)
T TIGR02881 193 -------EREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEKAIRRQAVRLLDKS 246 (261)
T ss_pred -------HcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhccC
Confidence 123458899999886642 22346699999999999999987766553
No 26
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=6.7e-21 Score=203.61 Aligned_cols=189 Identities=24% Similarity=0.368 Sum_probs=150.5
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
+++.||||||||||||++||++|++.+.+|+.+.+.++... |+|++ +..++..|+++ +++.++||||||||.+.
T Consensus 467 ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk-~vGeS-Er~ir~iF~kA----R~~aP~IiFfDEiDsi~ 540 (693)
T KOG0730|consen 467 PPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSK-YVGES-ERAIREVFRKA----RQVAPCIIFFDEIDALA 540 (693)
T ss_pred CCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHH-hcCch-HHHHHHHHHHH----hhcCCeEEehhhHHhHh
Confidence 78999999999999999999999999999999999999854 99998 88999999987 56788999999999999
Q ss_pred hhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCc
Q 038067 242 KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGF 321 (510)
Q Consensus 242 ~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf 321 (510)
.+++.+.+ ...++|++.||.-|||-. ...|+++|+++|..+
T Consensus 541 ~~R~g~~~--~v~~RVlsqLLtEmDG~e---------------------~~k~V~ViAATNRpd---------------- 581 (693)
T KOG0730|consen 541 GSRGGSSS--GVTDRVLSQLLTEMDGLE---------------------ALKNVLVIAATNRPD---------------- 581 (693)
T ss_pred hccCCCcc--chHHHHHHHHHHHccccc---------------------ccCcEEEEeccCChh----------------
Confidence 88864444 334569999999998632 235777787777321
Q ss_pred CcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhc--ccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHh
Q 038067 322 GAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIG--RFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFS 399 (510)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~--R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~ 399 (510)
.+.|++++ |||.+|++++++.+...+|++...
T Consensus 582 ----------------------------------~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~------------ 615 (693)
T KOG0730|consen 582 ----------------------------------MIDPALLRPGRLDRIIYVPLPDLEARLEILKQCA------------ 615 (693)
T ss_pred ----------------------------------hcCHHHcCCcccceeEeecCccHHHHHHHHHHHH------------
Confidence 14556665 999999999999999999997421
Q ss_pred cCCceeeeCHH-HHHHHHHhhCCCCCChhHHHHHHHHHHHHHHhcCcC
Q 038067 400 MNNVKLHFTDD-ALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPE 446 (510)
Q Consensus 400 ~~~~~l~is~~-al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~~~~~ 446 (510)
.++.++++ -++.|++. +..+..+.|..++++....++.+..+
T Consensus 616 ---kkmp~~~~vdl~~La~~--T~g~SGAel~~lCq~A~~~a~~e~i~ 658 (693)
T KOG0730|consen 616 ---KKMPFSEDVDLEELAQA--TEGYSGAEIVAVCQEAALLALRESIE 658 (693)
T ss_pred ---hcCCCCccccHHHHHHH--hccCChHHHHHHHHHHHHHHHHHhcc
Confidence 12334444 56777774 34666789999999988888887554
No 27
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=7.3e-20 Score=183.95 Aligned_cols=148 Identities=29% Similarity=0.460 Sum_probs=116.0
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
||+++|||||||||||+|||++|+..+..|+++.++++.+. |+|++ ...++++|+.+ +...++||||||||.+.
T Consensus 184 PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqK-YiGEG-aRlVRelF~lA----rekaPsIIFiDEIDAIg 257 (406)
T COG1222 184 PPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQK-YIGEG-ARLVRELFELA----REKAPSIIFIDEIDAIG 257 (406)
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHH-Hhccc-hHHHHHHHHHH----hhcCCeEEEEechhhhh
Confidence 88999999999999999999999999999999999999975 99998 78899999887 56789999999999999
Q ss_pred hhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCc
Q 038067 242 KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGF 321 (510)
Q Consensus 242 ~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf 321 (510)
..+....+. +.++||..++++|.. -+| +++. .|+-+|+++|-.+
T Consensus 258 ~kR~d~~t~--gDrEVQRTmleLL~q--------lDG--FD~~--------~nvKVI~ATNR~D---------------- 301 (406)
T COG1222 258 AKRFDSGTS--GDREVQRTMLELLNQ--------LDG--FDPR--------GNVKVIMATNRPD---------------- 301 (406)
T ss_pred cccccCCCC--chHHHHHHHHHHHHh--------ccC--CCCC--------CCeEEEEecCCcc----------------
Confidence 666543322 234699999999851 122 2223 3455555555221
Q ss_pred CcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhh--cccCceEecCCCCHHHHHHHHhc
Q 038067 322 GAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFI--GRFPILVSLSALNEDQLVQVLME 385 (510)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl--~R~~~iv~f~~Ls~eel~~Il~~ 385 (510)
-+.|+++ +|||..|.|+.++.+...+|++.
T Consensus 302 ----------------------------------~LDPALLRPGR~DRkIEfplPd~~gR~~Il~I 333 (406)
T COG1222 302 ----------------------------------ILDPALLRPGRFDRKIEFPLPDEEGRAEILKI 333 (406)
T ss_pred ----------------------------------ccChhhcCCCcccceeecCCCCHHHHHHHHHH
Confidence 0333333 79999999999999999999975
No 28
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=2.3e-19 Score=181.46 Aligned_cols=191 Identities=20% Similarity=0.287 Sum_probs=138.8
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
|++.+|++||||||||+|||++|.+++..|+.++.+.++ +.|.|++ +++++-+|..+ +...+++|||||||.+.
T Consensus 244 PWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstlt-SKwRGeS-EKlvRlLFemA----RfyAPStIFiDEIDslc 317 (491)
T KOG0738|consen 244 PWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLT-SKWRGES-EKLVRLLFEMA----RFYAPSTIFIDEIDSLC 317 (491)
T ss_pred ccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhh-hhhccch-HHHHHHHHHHH----HHhCCceeehhhHHHHH
Confidence 889999999999999999999999999999999999998 4599997 89999999887 55789999999999999
Q ss_pred hhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCC-CccchHHHHHhhcccCCCC
Q 038067 242 KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGG-AFVGLEKTISERRQDSSIG 320 (510)
Q Consensus 242 ~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg-~~~~l~~~i~~~~~~~~~g 320 (510)
..+.....++.|+ +|.+.||..|||-.-+ . .-++++||+++ ||
T Consensus 318 s~RG~s~EHEaSR-RvKsELLvQmDG~~~t---------~---------e~~k~VmVLAATN~----------------- 361 (491)
T KOG0738|consen 318 SQRGGSSEHEASR-RVKSELLVQMDGVQGT---------L---------ENSKVVMVLAATNF----------------- 361 (491)
T ss_pred hcCCCccchhHHH-HHHHHHHHHhhccccc---------c---------ccceeEEEEeccCC-----------------
Confidence 8887666666555 5999999999962211 1 11344555543 32
Q ss_pred cCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHhc
Q 038067 321 FGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFSM 400 (510)
Q Consensus 321 f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~~ 400 (510)
|.| +..+|+.||...|.++-++.+....+++..+
T Consensus 362 ----------------------------PWd-----iDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l------------- 395 (491)
T KOG0738|consen 362 ----------------------------PWD-----IDEALRRRLEKRIYIPLPDAEARSALIKILL------------- 395 (491)
T ss_pred ----------------------------Ccc-----hHHHHHHHHhhheeeeCCCHHHHHHHHHHhh-------------
Confidence 222 4557888888887777778887777776411
Q ss_pred CCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHHhc
Q 038067 401 NNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFE 443 (510)
Q Consensus 401 ~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~~ 443 (510)
..+ ...++--++.|++.. .++..-.+.++....-+.+|.+
T Consensus 396 ~~~-~~~~~~~~~~lae~~--eGySGaDI~nvCreAsm~~mRR 435 (491)
T KOG0738|consen 396 RSV-ELDDPVNLEDLAERS--EGYSGADITNVCREASMMAMRR 435 (491)
T ss_pred ccc-cCCCCccHHHHHHHh--cCCChHHHHHHHHHHHHHHHHH
Confidence 111 112334455666642 3444556777777776666663
No 29
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.81 E-value=2.8e-19 Score=188.70 Aligned_cols=202 Identities=18% Similarity=0.324 Sum_probs=154.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEecccccc----ccccccchhhHHHHHHHhhchhHHHhcCcEEEE
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALTQ----AGYVGEDAESVLYKLLAAADFDVEAAQRGIVYI 234 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~~----~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~i 234 (510)
...+||++|+|||||..+|++|++.. +.||+.+||..+.+ +..+|++ .+.++.......+.++.+.+|+|||
T Consensus 163 s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhe-kGAFTGA~~~r~G~fE~A~GGTLfL 241 (464)
T COG2204 163 SDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHE-KGAFTGAITRRIGRFEQANGGTLFL 241 (464)
T ss_pred CCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhccc-ccCcCCcccccCcceeEcCCceEEe
Confidence 66789999999999999999999999 45999999998763 4578887 6777777777777888899999999
Q ss_pred cchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhc
Q 038067 235 DEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERR 314 (510)
Q Consensus 235 DEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~ 314 (510)
|||..|+.. +|..||++|+.+.++ +-|+.+.-.- ++-+|++++ .+|++.+.+
T Consensus 242 DEI~~mpl~-------------~Q~kLLRvLqe~~~~----rvG~~~~i~v--------dvRiIaaT~-~dL~~~v~~-- 293 (464)
T COG2204 242 DEIGEMPLE-------------LQVKLLRVLQEREFE----RVGGNKPIKV--------DVRIIAATN-RDLEEEVAA-- 293 (464)
T ss_pred eccccCCHH-------------HHHHHHHHHHcCeeE----ecCCCcccce--------eeEEEeecC-cCHHHHHHc--
Confidence 999999876 899999999977776 4565543333 445555555 345554432
Q ss_pred ccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCce-EecCCCCH--HHHHHHHhchhHHHH
Q 038067 315 QDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPIL-VSLSALNE--DQLVQVLMEPKNALG 391 (510)
Q Consensus 315 ~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~i-v~f~~Ls~--eel~~Il~~~~~~l~ 391 (510)
..|++.|..|+.++ +.++||.+ +|+.-++.. ++
T Consensus 294 ----------------------------------------G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~h----fl 329 (464)
T COG2204 294 ----------------------------------------GRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEH----FL 329 (464)
T ss_pred ----------------------------------------CCcHHHHHhhhccceecCCcccccchhHHHHHHH----HH
Confidence 23888999999886 78888875 777777765 44
Q ss_pred HHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHH
Q 038067 392 RQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEA 440 (510)
Q Consensus 392 ~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~ 440 (510)
+++.... ......+++++++.|.. |.|.++.|+|++++++.+.-.
T Consensus 330 ~~~~~~~--~~~~~~~s~~a~~~L~~--y~WPGNVREL~N~ver~~il~ 374 (464)
T COG2204 330 KRFAAEL--GRPPKGFSPEALAALLA--YDWPGNVRELENVVERAVILS 374 (464)
T ss_pred HHHHHHc--CCCCCCCCHHHHHHHHh--CCCChHHHHHHHHHHHHHhcC
Confidence 4444432 23346799999999987 677888999999999977433
No 30
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.80 E-value=2.8e-19 Score=186.36 Aligned_cols=211 Identities=21% Similarity=0.380 Sum_probs=159.5
Q ss_pred hhhhccCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEecccccc----ccccccchhhHHHHHHHhhchhHHHhcC
Q 038067 157 EIVELEKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALTQ----AGYVGEDAESVLYKLLAAADFDVEAAQR 229 (510)
Q Consensus 157 ~~~~~~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~~----~gy~G~~~~~~l~~l~~~~~~~~~~~~~ 229 (510)
+.++.+..+||+.|.|||||..+||+|++.. +.||+.+||..+.+ +..+|+. .+.++.++....+.++.+.+
T Consensus 240 ~~VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELFGHe-KGAFTGA~~~r~GrFElAdG 318 (550)
T COG3604 240 EVVAKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELFGHE-KGAFTGAINTRRGRFELADG 318 (550)
T ss_pred HHHhcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHHHHhccc-ccccccchhccCcceeecCC
Confidence 4455678899999999999999999999999 57999999998763 4678886 78889999888888888999
Q ss_pred cEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHH
Q 038067 230 GIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKT 309 (510)
Q Consensus 230 ~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~ 309 (510)
|.||||||..|+.+ +|..||++|..+.+. +-|+.. .+.| ++-+|+++| .+|++.
T Consensus 319 GTLFLDEIGelPL~-------------lQaKLLRvLQegEie----RvG~~r-----~ikV---DVRiIAATN-RDL~~~ 372 (550)
T COG3604 319 GTLFLDEIGELPLA-------------LQAKLLRVLQEGEIE----RVGGDR-----TIKV---DVRVIAATN-RDLEEM 372 (550)
T ss_pred CeEechhhccCCHH-------------HHHHHHHHHhhccee----ecCCCc-----eeEE---EEEEEeccc-hhHHHH
Confidence 99999999999987 899999999877665 445433 2222 345666666 366666
Q ss_pred HHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCce-EecCCCCH--HHHHHHHhch
Q 038067 310 ISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPIL-VSLSALNE--DQLVQVLMEP 386 (510)
Q Consensus 310 i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~i-v~f~~Ls~--eel~~Il~~~ 386 (510)
+.+.. |+..|..|++++ +.++||-+ +|+--++..
T Consensus 373 V~~G~------------------------------------------FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~- 409 (550)
T COG3604 373 VRDGE------------------------------------------FRADLYYRLSVFPLELPPLRERPEDIPLLAGY- 409 (550)
T ss_pred HHcCc------------------------------------------chhhhhhcccccccCCCCcccCCccHHHHHHH-
Confidence 65432 666777788776 56666654 455545543
Q ss_pred hHHHHHHHHHHHhcCCc-eeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHHhcCcC
Q 038067 387 KNALGRQYKKMFSMNNV-KLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPE 446 (510)
Q Consensus 387 ~~~l~~~~~~~~~~~~~-~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~~~~~ 446 (510)
+.++++.. .|. .+.++++|++.|.+ |.|.++.|+|+++|++.+.-+ .....
T Consensus 410 ---Fle~~~~~---~gr~~l~ls~~Al~~L~~--y~wPGNVRELen~veRavlla-~~~~~ 461 (550)
T COG3604 410 ---FLEKFRRR---LGRAILSLSAEALELLSS--YEWPGNVRELENVVERAVLLA-GRLTR 461 (550)
T ss_pred ---HHHHHHHh---cCCcccccCHHHHHHHHc--CCCCCcHHHHHHHHHHHHHHh-cccCC
Confidence 34444433 355 78999999999998 667778999999999988766 44443
No 31
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.80 E-value=4.7e-19 Score=186.94 Aligned_cols=200 Identities=21% Similarity=0.361 Sum_probs=151.9
Q ss_pred ccCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccc----cccccccchhhHHHHHHHh-hchhHHHhcCcEE
Q 038067 161 LEKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALT----QAGYVGEDAESVLYKLLAA-ADFDVEAAQRGIV 232 (510)
Q Consensus 161 ~~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~----~~gy~G~~~~~~l~~l~~~-~~~~~~~~~~~Vl 232 (510)
....+||+.|.|||||..+|+++++.. +.||+.+||..+. ++..+|+. .+.++.+.+. .++.++.+++|.|
T Consensus 266 ~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESELFGye-~GAFTGA~~~GK~GlfE~A~gGTL 344 (560)
T COG3829 266 KTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLESELFGYE-KGAFTGASKGGKPGLFELANGGTL 344 (560)
T ss_pred CCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHHHHHHHhCcC-CccccccccCCCCcceeeccCCeE
Confidence 367899999999999999999999998 5799999999876 34567776 6677777665 5677788999999
Q ss_pred EEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHh
Q 038067 233 YIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISE 312 (510)
Q Consensus 233 ~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~ 312 (510)
|||||..|+.. .|..||++|+.+.+. +-|+...-.-+..+|.++|. +|.+.+++
T Consensus 345 FLDEIgempl~-------------LQaKLLRVLQEkei~----rvG~t~~~~vDVRIIAATN~---------nL~~~i~~ 398 (560)
T COG3829 345 FLDEIGEMPLP-------------LQAKLLRVLQEKEIE----RVGGTKPIPVDVRIIAATNR---------NLEKMIAE 398 (560)
T ss_pred EehhhccCCHH-------------HHHHHHHHHhhceEE----ecCCCCceeeEEEEEeccCc---------CHHHHHhc
Confidence 99999999877 899999999977776 55666554444444444443 55555543
Q ss_pred hcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCce-EecCCCCH--HHHHHHHhchhHH
Q 038067 313 RRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPIL-VSLSALNE--DQLVQVLMEPKNA 389 (510)
Q Consensus 313 ~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~i-v~f~~Ls~--eel~~Il~~~~~~ 389 (510)
. .|+..|..|++++ |.++||-+ +|+..++..
T Consensus 399 G------------------------------------------~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~---- 432 (560)
T COG3829 399 G------------------------------------------TFREDLYYRLNVIPITIPPLRERKEDIPLLAEY---- 432 (560)
T ss_pred C------------------------------------------cchhhheeeeceeeecCCCcccCcchHHHHHHH----
Confidence 2 3777788888876 67777764 677777764
Q ss_pred HHHHHHHHHhcCCceee-eCHHHHHHHHHhhCCCCCChhHHHHHHHHHHH
Q 038067 390 LGRQYKKMFSMNNVKLH-FTDDALRLIAKKAMAKNTGARGLRALLENILT 438 (510)
Q Consensus 390 l~~~~~~~~~~~~~~l~-is~~al~~La~~~~~~~~gaR~L~~~ie~~l~ 438 (510)
++.+|...+ +..+. ++++++..|.+ |.|.++.|+|+++||+.+.
T Consensus 433 Fl~k~s~~~---~~~v~~ls~~a~~~L~~--y~WPGNVRELeNviER~v~ 477 (560)
T COG3829 433 FLDKFSRRY---GRNVKGLSPDALALLLR--YDWPGNVRELENVIERAVN 477 (560)
T ss_pred HHHHHHHHc---CCCcccCCHHHHHHHHh--CCCCchHHHHHHHHHHHHh
Confidence 444454433 33444 89999999988 6778889999999999874
No 32
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.5e-18 Score=183.42 Aligned_cols=190 Identities=28% Similarity=0.401 Sum_probs=137.0
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
.|.++|||||||||||.|||++|++.+..|+.+-..++.. .|+|++ +..++.+|+.+ +...+|||||||||.|.
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlN-kYVGES-ErAVR~vFqRA----R~saPCVIFFDEiDaL~ 617 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLN-KYVGES-ERAVRQVFQRA----RASAPCVIFFDEIDALV 617 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHH-HHhhhH-HHHHHHHHHHh----hcCCCeEEEecchhhcC
Confidence 6789999999999999999999999999999999999985 499998 78899999887 56789999999999999
Q ss_pred hhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCc
Q 038067 242 KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGF 321 (510)
Q Consensus 242 ~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf 321 (510)
+.++... ..++.+|.+.||.-|||..-+ .++.+|.++|-.++
T Consensus 618 p~R~~~~--s~~s~RvvNqLLtElDGl~~R---------------------~gV~viaATNRPDi--------------- 659 (802)
T KOG0733|consen 618 PRRSDEG--SSVSSRVVNQLLTELDGLEER---------------------RGVYVIAATNRPDI--------------- 659 (802)
T ss_pred cccCCCC--chhHHHHHHHHHHHhcccccc---------------------cceEEEeecCCCcc---------------
Confidence 8876554 233456999999999974321 23444555552221
Q ss_pred CcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHhcC
Q 038067 322 GAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFSMN 401 (510)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~~~ 401 (510)
++| ..++| +|||.++.+..++.+|...|++. +- +
T Consensus 660 -------------------------IDp-----AiLRP---GRlDk~LyV~lPn~~eR~~ILK~----~t---------k 693 (802)
T KOG0733|consen 660 -------------------------IDP-----AILRP---GRLDKLLYVGLPNAEERVAILKT----IT---------K 693 (802)
T ss_pred -------------------------cch-----hhcCC---CccCceeeecCCCHHHHHHHHHH----Hh---------c
Confidence 001 12455 79999999999999999999974 11 2
Q ss_pred CceeeeCH-HHHHHHHHhhCCCCCChhHHHHHHHHHHHHHH
Q 038067 402 NVKLHFTD-DALRLIAKKAMAKNTGARGLRALLENILTEAM 441 (510)
Q Consensus 402 ~~~l~is~-~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l 441 (510)
+.+..+++ --++.|+...-..++..-.|..+++..-.-++
T Consensus 694 n~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL 734 (802)
T KOG0733|consen 694 NTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILAL 734 (802)
T ss_pred cCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHH
Confidence 22233333 34666776544345555567777766443343
No 33
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.4e-18 Score=181.18 Aligned_cols=190 Identities=24% Similarity=0.341 Sum_probs=136.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
-|++|||+||||||||+|||++|.+.++||+....++|-+. |+|.. ...++++|..+ ++..+|||||||||.+.
T Consensus 336 LPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm-~VGvG-ArRVRdLF~aA----k~~APcIIFIDEiDavG 409 (752)
T KOG0734|consen 336 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEM-FVGVG-ARRVRDLFAAA----KARAPCIIFIDEIDAVG 409 (752)
T ss_pred CCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhh-hhccc-HHHHHHHHHHH----HhcCCeEEEEechhhhc
Confidence 56789999999999999999999999999999999999876 99987 68899999887 56789999999999998
Q ss_pred hhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCc
Q 038067 242 KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGF 321 (510)
Q Consensus 242 ~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf 321 (510)
..+.....+ ..++.++.||.-|||-.- ...+|+|.++||.+
T Consensus 410 ~kR~~~~~~--y~kqTlNQLLvEmDGF~q---------------------NeGiIvigATNfpe---------------- 450 (752)
T KOG0734|consen 410 GKRNPSDQH--YAKQTLNQLLVEMDGFKQ---------------------NEGIIVIGATNFPE---------------- 450 (752)
T ss_pred ccCCccHHH--HHHHHHHHHHHHhcCcCc---------------------CCceEEEeccCChh----------------
Confidence 665433322 345688889998886321 13567788888652
Q ss_pred CcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHhcC
Q 038067 322 GAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFSMN 401 (510)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~~~ 401 (510)
+|-+.-.+| +|||..|.++.++-.-..+|+..++..+.
T Consensus 451 -----------------------------~LD~AL~RP---GRFD~~v~Vp~PDv~GR~eIL~~yl~ki~---------- 488 (752)
T KOG0734|consen 451 -----------------------------ALDKALTRP---GRFDRHVTVPLPDVRGRTEILKLYLSKIP---------- 488 (752)
T ss_pred -----------------------------hhhHHhcCC---CccceeEecCCCCcccHHHHHHHHHhcCC----------
Confidence 222223455 79999999999998888899876332211
Q ss_pred CceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHHhcC
Q 038067 402 NVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEI 444 (510)
Q Consensus 402 ~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~~~ 444 (510)
..-.++++ .||+ + .+++..-.|.+++...-..+..+.
T Consensus 489 -~~~~VD~~---iiAR-G-T~GFsGAdLaNlVNqAAlkAa~dg 525 (752)
T KOG0734|consen 489 -LDEDVDPK---IIAR-G-TPGFSGADLANLVNQAALKAAVDG 525 (752)
T ss_pred -cccCCCHh---Hhcc-C-CCCCchHHHHHHHHHHHHHHHhcC
Confidence 11112332 3343 2 344445677777777666555543
No 34
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.78 E-value=2.9e-18 Score=167.84 Aligned_cols=179 Identities=26% Similarity=0.423 Sum_probs=135.2
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
..-|+||+||||.|||+||..+|+++|..+-..++..+..+| + +..++..- .++.|+|||||+++.
T Consensus 51 ~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~g----D----laaiLt~L------e~~DVLFIDEIHrl~ 116 (332)
T COG2255 51 ALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKPG----D----LAAILTNL------EEGDVLFIDEIHRLS 116 (332)
T ss_pred CcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccChh----h----HHHHHhcC------CcCCeEEEehhhhcC
Confidence 457999999999999999999999999999888887776553 1 22222221 356799999999998
Q ss_pred hhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCc
Q 038067 242 KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGF 321 (510)
Q Consensus 242 ~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf 321 (510)
+. |-..|+.+||+..++|.+ ..| +..+++.++...+.+|-+++-.+
T Consensus 117 ~~-------------vEE~LYpaMEDf~lDI~I-G~g----p~Arsv~ldLppFTLIGATTr~G---------------- 162 (332)
T COG2255 117 PA-------------VEEVLYPAMEDFRLDIII-GKG----PAARSIRLDLPPFTLIGATTRAG---------------- 162 (332)
T ss_pred hh-------------HHHHhhhhhhheeEEEEE-ccC----CccceEeccCCCeeEeeeccccc----------------
Confidence 77 899999999998888875 222 34566778888887776554111
Q ss_pred CcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHhcC
Q 038067 322 GAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFSMN 401 (510)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~~~ 401 (510)
.+..+|.+||..+..+.-++.+|+.+|+.+. ..
T Consensus 163 ----------------------------------~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~-------------a~ 195 (332)
T COG2255 163 ----------------------------------MLTNPLRDRFGIIQRLEFYTVEELEEIVKRS-------------AK 195 (332)
T ss_pred ----------------------------------cccchhHHhcCCeeeeecCCHHHHHHHHHHH-------------HH
Confidence 1556899999999999999999999999751 22
Q ss_pred CceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHH
Q 038067 402 NVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILT 438 (510)
Q Consensus 402 ~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~ 438 (510)
-..+.+++++...||+++ .+-.|-..+++.++-.
T Consensus 196 ~l~i~i~~~~a~eIA~rS---RGTPRIAnRLLrRVRD 229 (332)
T COG2255 196 ILGIEIDEEAALEIARRS---RGTPRIANRLLRRVRD 229 (332)
T ss_pred HhCCCCChHHHHHHHHhc---cCCcHHHHHHHHHHHH
Confidence 356778999999999986 3345655666655443
No 35
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.78 E-value=2.4e-18 Score=175.61 Aligned_cols=171 Identities=25% Similarity=0.383 Sum_probs=126.4
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
...+++||||||||||++|+.||+.++.+|..+++..-. -+-++..++.+..........|||||||+++.
T Consensus 47 ~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~g---------vkdlr~i~e~a~~~~~~gr~tiLflDEIHRfn 117 (436)
T COG2256 47 HLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSG---------VKDLREIIEEARKNRLLGRRTILFLDEIHRFN 117 (436)
T ss_pred CCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccccc---------HHHHHHHHHHHHHHHhcCCceEEEEehhhhcC
Confidence 346899999999999999999999999999999987642 23456666665333333457899999999998
Q ss_pred hhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCc
Q 038067 242 KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGF 321 (510)
Q Consensus 242 ~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf 321 (510)
+.. |+.||..+|.+.+ ++|.+++
T Consensus 118 K~Q-------------QD~lLp~vE~G~i-------------------------ilIGATT------------------- 140 (436)
T COG2256 118 KAQ-------------QDALLPHVENGTI-------------------------ILIGATT------------------- 140 (436)
T ss_pred hhh-------------hhhhhhhhcCCeE-------------------------EEEeccC-------------------
Confidence 874 9999999985433 2333222
Q ss_pred CcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHhcC
Q 038067 322 GAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFSMN 401 (510)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~~~ 401 (510)
++++ +-+.|++++|.-+. .|.||+.+++.+++.+.+....+ ...
T Consensus 141 -----------ENPs------------------F~ln~ALlSR~~vf-~lk~L~~~di~~~l~ra~~~~~r------gl~ 184 (436)
T COG2256 141 -----------ENPS------------------FELNPALLSRARVF-ELKPLSSEDIKKLLKRALLDEER------GLG 184 (436)
T ss_pred -----------CCCC------------------eeecHHHhhhhhee-eeecCCHHHHHHHHHHHHhhhhc------CCC
Confidence 1111 23788999999664 89999999999999863211111 123
Q ss_pred CceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHH
Q 038067 402 NVKLHFTDDALRLIAKKAMAKNTGARGLRALLENIL 437 (510)
Q Consensus 402 ~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l 437 (510)
+..+.++++++++|+..+ ++.+|.+-+.+|-++
T Consensus 185 ~~~~~i~~~a~~~l~~~s---~GD~R~aLN~LE~~~ 217 (436)
T COG2256 185 GQIIVLDEEALDYLVRLS---NGDARRALNLLELAA 217 (436)
T ss_pred cccccCCHHHHHHHHHhc---CchHHHHHHHHHHHH
Confidence 445668999999999987 778999999888654
No 36
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.77 E-value=1.2e-17 Score=179.56 Aligned_cols=187 Identities=20% Similarity=0.311 Sum_probs=135.1
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
.++++||+||||||||++|+++|+.++.|++.++++.+. .+|+|++ +..++.+|..+ +...++||||||||++.
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~-~~~vGes-e~~l~~~f~~A----~~~~P~IL~IDEID~~~ 331 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLF-GGIVGES-ESRMRQMIRIA----EALSPCILWIDEIDKAF 331 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhc-ccccChH-HHHHHHHHHHH----HhcCCcEEEehhhhhhh
Confidence 668999999999999999999999999999999999887 4699986 66778888764 45678999999999987
Q ss_pred hhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCc
Q 038067 242 KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGF 321 (510)
Q Consensus 242 ~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf 321 (510)
.......... ....+...|+..|++ ..+++++|+|+|..+
T Consensus 332 ~~~~~~~d~~-~~~rvl~~lL~~l~~-----------------------~~~~V~vIaTTN~~~---------------- 371 (489)
T CHL00195 332 SNSESKGDSG-TTNRVLATFITWLSE-----------------------KKSPVFVVATANNID---------------- 371 (489)
T ss_pred ccccCCCCch-HHHHHHHHHHHHHhc-----------------------CCCceEEEEecCChh----------------
Confidence 5322111111 223577888888852 123466777766221
Q ss_pred CcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhh--cccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHh
Q 038067 322 GAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFI--GRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFS 399 (510)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl--~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~ 399 (510)
.+.|+++ +|||.++.++.++.++..+|++..+...
T Consensus 372 ----------------------------------~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~--------- 408 (489)
T CHL00195 372 ----------------------------------LLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKF--------- 408 (489)
T ss_pred ----------------------------------hCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhc---------
Confidence 2667776 4999999999999999999998532111
Q ss_pred cCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHHh
Q 038067 400 MNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMF 442 (510)
Q Consensus 400 ~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~ 442 (510)
+. ...++..++.|++. ..++..+.|++++......+..
T Consensus 409 --~~-~~~~~~dl~~La~~--T~GfSGAdI~~lv~eA~~~A~~ 446 (489)
T CHL00195 409 --RP-KSWKKYDIKKLSKL--SNKFSGAEIEQSIIEAMYIAFY 446 (489)
T ss_pred --CC-CcccccCHHHHHhh--cCCCCHHHHHHHHHHHHHHHHH
Confidence 10 01234456778875 4567778898888877766654
No 37
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.1e-17 Score=183.86 Aligned_cols=149 Identities=27% Similarity=0.417 Sum_probs=119.7
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
.|+.+||+||||||||.|||++|.+.++||+.+++++|.+. |+|.. ...++++|..+ +...++||||||||.+.
T Consensus 343 iPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~-~~g~~-asrvr~lf~~a----r~~aP~iifideida~~ 416 (774)
T KOG0731|consen 343 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEM-FVGVG-ASRVRDLFPLA----RKNAPSIIFIDEIDAVG 416 (774)
T ss_pred CcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHH-hcccc-hHHHHHHHHHh----hccCCeEEEeccccccc
Confidence 77899999999999999999999999999999999999975 77776 67889999887 56789999999999999
Q ss_pred hhccC--CCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCC
Q 038067 242 KAESR--NNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSI 319 (510)
Q Consensus 242 ~~~~~--~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~ 319 (510)
..+.. ..+.+..++..++.||.-|||.. .+++++|++++|-.+.
T Consensus 417 ~~r~G~~~~~~~~e~e~tlnQll~emDgf~---------------------~~~~vi~~a~tnr~d~------------- 462 (774)
T KOG0731|consen 417 RKRGGKGTGGGQDEREQTLNQLLVEMDGFE---------------------TSKGVIVLAATNRPDI------------- 462 (774)
T ss_pred ccccccccCCCChHHHHHHHHHHHHhcCCc---------------------CCCcEEEEeccCCccc-------------
Confidence 77642 33556667789999999998621 2356788888773220
Q ss_pred CcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhc
Q 038067 320 GFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLME 385 (510)
Q Consensus 320 gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~ 385 (510)
|....++| +|||..|....++.....+|++.
T Consensus 463 --------------------------------ld~allrp---GRfdr~i~i~~p~~~~r~~i~~~ 493 (774)
T KOG0731|consen 463 --------------------------------LDPALLRP---GRFDRQIQIDLPDVKGRASILKV 493 (774)
T ss_pred --------------------------------cCHHhcCC---CccccceeccCCchhhhHHHHHH
Confidence 01112444 79999999999999999999975
No 38
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.75 E-value=2.1e-17 Score=170.42 Aligned_cols=200 Identities=18% Similarity=0.284 Sum_probs=136.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccccc----cccccchhhHHHHHHHhhchhHHHhcCcEEEE
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALTQA----GYVGEDAESVLYKLLAAADFDVEAAQRGIVYI 234 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~~~----gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~i 234 (510)
...+|||+|++||||+++|++|+... +.||+.+||..+.+. ..+|+. .+.++.......+.+..+.+|+|||
T Consensus 21 ~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~-~g~~~ga~~~~~G~~~~a~gGtL~L 99 (329)
T TIGR02974 21 LDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHE-AGAFTGAQKRHQGRFERADGGTLFL 99 (329)
T ss_pred CCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccc-cccccCcccccCCchhhCCCCEEEe
Confidence 45689999999999999999999877 469999999987532 122322 1111111112233456678999999
Q ss_pred cchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhc
Q 038067 235 DEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERR 314 (510)
Q Consensus 235 DEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~ 314 (510)
|||+.|+.. +|..|+++|+.+.+. ..|+.. ....++.+|++++. ++.+.+.
T Consensus 100 dei~~L~~~-------------~Q~~Ll~~l~~~~~~----~~g~~~--------~~~~~~RiI~at~~-~l~~~~~--- 150 (329)
T TIGR02974 100 DELATASLL-------------VQEKLLRVIEYGEFE----RVGGSQ--------TLQVDVRLVCATNA-DLPALAA--- 150 (329)
T ss_pred CChHhCCHH-------------HHHHHHHHHHcCcEE----ecCCCc--------eeccceEEEEechh-hHHHHhh---
Confidence 999999876 899999999855443 223221 12345667776651 2221111
Q ss_pred ccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCc-eEecCCCC--HHHHHHHHhchhHHHH
Q 038067 315 QDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPI-LVSLSALN--EDQLVQVLMEPKNALG 391 (510)
Q Consensus 315 ~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~-iv~f~~Ls--~eel~~Il~~~~~~l~ 391 (510)
+..|+++|+.|+.. .|.++||. .+|+..++...+
T Consensus 151 ---------------------------------------~g~fr~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl---- 187 (329)
T TIGR02974 151 ---------------------------------------EGRFRADLLDRLAFDVITLPPLRERQEDIMLLAEHFA---- 187 (329)
T ss_pred ---------------------------------------cCchHHHHHHHhcchhcCCCchhhhhhhHHHHHHHHH----
Confidence 13488999999965 68999998 478888877533
Q ss_pred HHHHHHHhcCCce--eeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHH
Q 038067 392 RQYKKMFSMNNVK--LHFTDDALRLIAKKAMAKNTGARGLRALLENILTE 439 (510)
Q Consensus 392 ~~~~~~~~~~~~~--l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~ 439 (510)
.++... .+.. ..+++++++.|.. |.|.++.|+|+++|++.+..
T Consensus 188 ~~~~~~---~~~~~~~~ls~~a~~~L~~--y~WPGNvrEL~n~i~~~~~~ 232 (329)
T TIGR02974 188 IRMARE---LGLPLFPGFTPQAREQLLE--YHWPGNVRELKNVVERSVYR 232 (329)
T ss_pred HHHHHH---hCCCCCCCcCHHHHHHHHh--CCCCchHHHHHHHHHHHHHh
Confidence 333322 2333 4799999999998 56777899999999998764
No 39
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1e-17 Score=181.17 Aligned_cols=100 Identities=31% Similarity=0.524 Sum_probs=87.4
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
+++++|||||||||||.+||++|.+++..|+.+-.-++... |+|++ +..+++.|+++ +.+.+||||+||+|.++
T Consensus 704 kRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNM-YVGqS-E~NVR~VFerA----R~A~PCVIFFDELDSlA 777 (953)
T KOG0736|consen 704 KRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNM-YVGQS-EENVREVFERA----RSAAPCVIFFDELDSLA 777 (953)
T ss_pred ccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHH-Hhcch-HHHHHHHHHHh----hccCCeEEEeccccccC
Confidence 56789999999999999999999999999999999999854 99998 78899999987 67899999999999999
Q ss_pred hhccCCCCCCCchhhHHHHHHHHhhC
Q 038067 242 KAESRNNGRDVSGEGVQQALLKMLEG 267 (510)
Q Consensus 242 ~~~~~~~~~~~~~~~v~~~LL~~leg 267 (510)
+.+..++.+.--=++|...||.-|||
T Consensus 778 P~RG~sGDSGGVMDRVVSQLLAELDg 803 (953)
T KOG0736|consen 778 PNRGRSGDSGGVMDRVVSQLLAELDG 803 (953)
T ss_pred ccCCCCCCccccHHHHHHHHHHHhhc
Confidence 88766554443335789999999985
No 40
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.74 E-value=4.1e-17 Score=185.07 Aligned_cols=190 Identities=24% Similarity=0.371 Sum_probs=140.8
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
++.++||+||||||||++|+++|+.++.+|+.++++++.. .|+|++ +..++.+|..+ +...++||||||||.+.
T Consensus 486 ~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~-~~vGes-e~~i~~~f~~A----~~~~p~iifiDEid~l~ 559 (733)
T TIGR01243 486 PPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILS-KWVGES-EKAIREIFRKA----RQAAPAIIFFDEIDAIA 559 (733)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhh-cccCcH-HHHHHHHHHHH----HhcCCEEEEEEChhhhh
Confidence 5678999999999999999999999999999999999874 499987 67788888775 45678999999999998
Q ss_pred hhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCc
Q 038067 242 KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGF 321 (510)
Q Consensus 242 ~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf 321 (510)
+.+....... ..+.+.+.||..|+|- ....++++|+|+|..+
T Consensus 560 ~~r~~~~~~~-~~~~~~~~lL~~ldg~---------------------~~~~~v~vI~aTn~~~---------------- 601 (733)
T TIGR01243 560 PARGARFDTS-VTDRIVNQLLTEMDGI---------------------QELSNVVVIAATNRPD---------------- 601 (733)
T ss_pred ccCCCCCCcc-HHHHHHHHHHHHhhcc---------------------cCCCCEEEEEeCCChh----------------
Confidence 7654222222 2345888899999741 1234677777777221
Q ss_pred CcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhh--cccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHh
Q 038067 322 GAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFI--GRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFS 399 (510)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl--~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~ 399 (510)
.+.|+++ +|||.++.++.++.++..+|++...
T Consensus 602 ----------------------------------~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~------------ 635 (733)
T TIGR01243 602 ----------------------------------ILDPALLRPGRFDRLILVPPPDEEARKEIFKIHT------------ 635 (733)
T ss_pred ----------------------------------hCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHh------------
Confidence 1566776 5999999999999999999986311
Q ss_pred cCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHHhcCc
Q 038067 400 MNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIP 445 (510)
Q Consensus 400 ~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~~~~ 445 (510)
.+..+. ++..++.|++. ..++.+..|..++......++.+..
T Consensus 636 -~~~~~~-~~~~l~~la~~--t~g~sgadi~~~~~~A~~~a~~~~~ 677 (733)
T TIGR01243 636 -RSMPLA-EDVDLEELAEM--TEGYTGADIEAVCREAAMAALRESI 677 (733)
T ss_pred -cCCCCC-ccCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 122211 22246777775 3456678899999888888877654
No 41
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.73 E-value=4.5e-17 Score=175.19 Aligned_cols=152 Identities=24% Similarity=0.380 Sum_probs=109.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCC----------eEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcE
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVP----------FTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGI 231 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p----------~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~V 231 (510)
+++++||+||||||||++|+++|+.++.+ |+.+..+++.. .|+|+. +..++.+|..+........++|
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~-kyvGet-e~~ir~iF~~Ar~~a~~g~p~I 292 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLN-KYVGET-ERQIRLIFQRAREKASDGRPVI 292 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhcc-cccchH-HHHHHHHHHHHHHHhhcCCCce
Confidence 66789999999999999999999998654 44555555543 477776 5566777766532222346789
Q ss_pred EEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHH
Q 038067 232 VYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTIS 311 (510)
Q Consensus 232 l~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~ 311 (510)
|||||+|.+...+..+..++.. ..+.+.||..|+|- -...++++|+|+|..+
T Consensus 293 IfIDEiD~L~~~R~~~~s~d~e-~~il~~LL~~LDgl---------------------~~~~~ViVI~ATN~~d------ 344 (512)
T TIGR03689 293 VFFDEMDSIFRTRGSGVSSDVE-TTVVPQLLSELDGV---------------------ESLDNVIVIGASNRED------ 344 (512)
T ss_pred EEEehhhhhhcccCCCccchHH-HHHHHHHHHHhccc---------------------ccCCceEEEeccCChh------
Confidence 9999999998765443334432 34678888888741 1235677777777221
Q ss_pred hhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhc--ccCceEecCCCCHHHHHHHHhchh
Q 038067 312 ERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIG--RFPILVSLSALNEDQLVQVLMEPK 387 (510)
Q Consensus 312 ~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~--R~~~iv~f~~Ls~eel~~Il~~~~ 387 (510)
.+.|++++ |||..|.|++++.++..+|++..+
T Consensus 345 --------------------------------------------~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 345 --------------------------------------------MIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred --------------------------------------------hCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 26778876 999999999999999999998654
No 42
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.73 E-value=1.3e-16 Score=173.23 Aligned_cols=147 Identities=27% Similarity=0.399 Sum_probs=108.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
.+.++||+||||||||++|+++|..++.|++.++++++... |+|.. ...++.+|..+ ....++||||||||.+.
T Consensus 87 ~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~-~~g~~-~~~l~~~f~~a----~~~~p~Il~iDEid~l~ 160 (495)
T TIGR01241 87 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVG-ASRVRDLFEQA----KKNAPCIIFIDEIDAVG 160 (495)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHH-Hhccc-HHHHHHHHHHH----HhcCCCEEEEechhhhh
Confidence 56789999999999999999999999999999999988743 66665 45677777665 34577999999999998
Q ss_pred hhccCCC-CCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCC
Q 038067 242 KAESRNN-GRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIG 320 (510)
Q Consensus 242 ~~~~~~~-~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~g 320 (510)
..+.... +.+.....+++.||..|++- ....++++|+|+|..+
T Consensus 161 ~~r~~~~~~~~~~~~~~~~~lL~~~d~~---------------------~~~~~v~vI~aTn~~~--------------- 204 (495)
T TIGR01241 161 RQRGAGLGGGNDEREQTLNQLLVEMDGF---------------------GTNTGVIVIAATNRPD--------------- 204 (495)
T ss_pred hccccCcCCccHHHHHHHHHHHhhhccc---------------------cCCCCeEEEEecCChh---------------
Confidence 6654321 11222345777888888631 1123466777766221
Q ss_pred cCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhh--cccCceEecCCCCHHHHHHHHhc
Q 038067 321 FGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFI--GRFPILVSLSALNEDQLVQVLME 385 (510)
Q Consensus 321 f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl--~R~~~iv~f~~Ls~eel~~Il~~ 385 (510)
.+.|+++ +|||..+.++.++.++..+|++.
T Consensus 205 -----------------------------------~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~ 236 (495)
T TIGR01241 205 -----------------------------------VLDPALLRPGRFDRQVVVDLPDIKGREEILKV 236 (495)
T ss_pred -----------------------------------hcCHHHhcCCcceEEEEcCCCCHHHHHHHHHH
Confidence 1455665 49999999999999999999975
No 43
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.72 E-value=1e-16 Score=163.72 Aligned_cols=177 Identities=13% Similarity=0.150 Sum_probs=124.8
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhH-HHhcCcEEEEcchhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDV-EAAQRGIVYIDEVDKI 240 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~-~~~~~~Vl~iDEidkl 240 (510)
+|..++|+||||||||++|+++|+.++.+++.+++.++. .+|+|+. ++.++.+|+.+.... .+..++||||||||++
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~-sk~vGEs-Ek~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~ 224 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELE-SENAGEP-GKLIRQRYREAADIIKKKGKMSCLFINDLDAG 224 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhh-cCcCCcH-HHHHHHHHHHHHHHhhccCCCeEEEEehhhhc
Confidence 778999999999999999999999999999999999998 4599997 789999998774322 2357899999999999
Q ss_pred hhhccCCCCCCCchhhHHHHHHHHhhCc-eeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCC
Q 038067 241 VKAESRNNGRDVSGEGVQQALLKMLEGT-VVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSI 319 (510)
Q Consensus 241 ~~~~~~~~~~~~~~~~v~~~LL~~leg~-~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~ 319 (510)
.+.+. +....+..+.+...|+.++|+- .+.+ .| .... .-...++.+|+|+|..+
T Consensus 225 ~g~r~-~~~~tv~~qiV~~tLLnl~D~p~~v~l----~G-~w~~-----~~~~~~V~VIaTTNrpd-------------- 279 (413)
T PLN00020 225 AGRFG-TTQYTVNNQMVNGTLMNIADNPTNVSL----GG-DWRE-----KEEIPRVPIIVTGNDFS-------------- 279 (413)
T ss_pred CCCCC-CCCcchHHHHHHHHHHHHhcCCccccc----cc-cccc-----cccCCCceEEEeCCCcc--------------
Confidence 87654 2233333334557899998741 1111 01 0000 01235577788877221
Q ss_pred CcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhc--ccCceEecCCCCHHHHHHHHhchhHHHHHHHHHH
Q 038067 320 GFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIG--RFPILVSLSALNEDQLVQVLMEPKNALGRQYKKM 397 (510)
Q Consensus 320 gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~--R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~ 397 (510)
.+.|+|+. |||..+ ..++.++..+|++..+
T Consensus 280 ------------------------------------~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~---------- 311 (413)
T PLN00020 280 ------------------------------------TLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIF---------- 311 (413)
T ss_pred ------------------------------------cCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHh----------
Confidence 26778887 999975 4688999999997411
Q ss_pred HhcCCceeeeCHHHHHHHHHh
Q 038067 398 FSMNNVKLHFTDDALRLIAKK 418 (510)
Q Consensus 398 ~~~~~~~l~is~~al~~La~~ 418 (510)
.. ..++...+..|++.
T Consensus 312 -r~----~~l~~~dv~~Lv~~ 327 (413)
T PLN00020 312 -RD----DGVSREDVVKLVDT 327 (413)
T ss_pred -cc----CCCCHHHHHHHHHc
Confidence 11 23456677777765
No 44
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1.4e-16 Score=173.15 Aligned_cols=190 Identities=26% Similarity=0.376 Sum_probs=140.1
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
++.++||+||||||||++|+++|..++.+|+.++.+++. ..|+|+. ++.++.+|..+ ++..++||||||+|++.
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~-sk~vGes-ek~ir~~F~~A----~~~~p~iiFiDEiDs~~ 348 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELL-SKWVGES-EKNIRELFEKA----RKLAPSIIFIDEIDSLA 348 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHh-ccccchH-HHHHHHHHHHH----HcCCCcEEEEEchhhhh
Confidence 567999999999999999999999999999999999887 4599997 78899999887 46789999999999999
Q ss_pred hhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCc
Q 038067 242 KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGF 321 (510)
Q Consensus 242 ~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf 321 (510)
..++.+ .+.+.+.+.+.||..|+|-. ..+++++|.++|..+
T Consensus 349 ~~r~~~--~~~~~~r~~~~lL~~~d~~e---------------------~~~~v~vi~aTN~p~---------------- 389 (494)
T COG0464 349 SGRGPS--EDGSGRRVVGQLLTELDGIE---------------------KAEGVLVIAATNRPD---------------- 389 (494)
T ss_pred ccCCCC--CchHHHHHHHHHHHHhcCCC---------------------ccCceEEEecCCCcc----------------
Confidence 766422 22222568999999997411 223455566666221
Q ss_pred CcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhc--ccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHh
Q 038067 322 GAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIG--RFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFS 399 (510)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~--R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~ 399 (510)
.+.|+++. |||.++.+++++.++..+|++..+..
T Consensus 390 ----------------------------------~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~---------- 425 (494)
T COG0464 390 ----------------------------------DLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRD---------- 425 (494)
T ss_pred ----------------------------------ccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcc----------
Confidence 15556666 99999999999999999999863311
Q ss_pred cCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHHhcC
Q 038067 400 MNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEI 444 (510)
Q Consensus 400 ~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~~~ 444 (510)
.+.. ...+-.++.+++. ...+....+..+++.....++.+.
T Consensus 426 -~~~~-~~~~~~~~~l~~~--t~~~sgadi~~i~~ea~~~~~~~~ 466 (494)
T COG0464 426 -KKPP-LAEDVDLEELAEI--TEGYSGADIAALVREAALEALREA 466 (494)
T ss_pred -cCCc-chhhhhHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHh
Confidence 0111 1234455666653 234556778888888887777765
No 45
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=3.6e-17 Score=173.14 Aligned_cols=149 Identities=28% Similarity=0.420 Sum_probs=116.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
|++++||+||||||||+||+++|.++++||+.+++.++. +|+.|++ ++.++++|..+ ..+.++|+||||||.+.
T Consensus 222 PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeiv-SGvSGES-EkkiRelF~~A----~~~aPcivFiDeIDAI~ 295 (802)
T KOG0733|consen 222 PPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIV-SGVSGES-EKKIRELFDQA----KSNAPCIVFIDEIDAIT 295 (802)
T ss_pred CCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhh-cccCccc-HHHHHHHHHHH----hccCCeEEEeecccccc
Confidence 889999999999999999999999999999999999998 6899998 78899999887 45789999999999999
Q ss_pred hhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCc
Q 038067 242 KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGF 321 (510)
Q Consensus 242 ~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf 321 (510)
+.+. ..++++.++ +...||..||+-... .. +...+++|.++|-.+
T Consensus 296 pkRe-~aqreMErR-iVaQLlt~mD~l~~~----------~~-------~g~~VlVIgATnRPD---------------- 340 (802)
T KOG0733|consen 296 PKRE-EAQREMERR-IVAQLLTSMDELSNE----------KT-------KGDPVLVIGATNRPD---------------- 340 (802)
T ss_pred cchh-hHHHHHHHH-HHHHHHHhhhccccc----------cc-------CCCCeEEEecCCCCc----------------
Confidence 7654 245555544 788899999842111 01 123366666666221
Q ss_pred CcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhh--hcccCceEecCCCCHHHHHHHHhc
Q 038067 322 GAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEF--IGRFPILVSLSALNEDQLVQVLME 385 (510)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pef--l~R~~~iv~f~~Ls~eel~~Il~~ 385 (510)
.+.|+| .+|||.-|.+.-+++....+|++.
T Consensus 341 ----------------------------------slDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~ 372 (802)
T KOG0733|consen 341 ----------------------------------SLDPALRRAGRFDREICLGVPSETAREEILRI 372 (802)
T ss_pred ----------------------------------ccCHHHhccccccceeeecCCchHHHHHHHHH
Confidence 133333 379999999999999999999975
No 46
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=8.7e-17 Score=157.97 Aligned_cols=98 Identities=29% Similarity=0.542 Sum_probs=82.6
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
|.+.+||+|||||||++||+++|.+.+..|+.++.+++.. .|.|++ ++.+.++|+.+ ++..++||||||||.+.
T Consensus 165 PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvS-KWmGES-EkLVknLFemA----Re~kPSIIFiDEiDslc 238 (439)
T KOG0739|consen 165 PWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS-KWMGES-EKLVKNLFEMA----RENKPSIIFIDEIDSLC 238 (439)
T ss_pred cceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHH-HHhccH-HHHHHHHHHHH----HhcCCcEEEeehhhhhc
Confidence 7899999999999999999999999999999999999984 599997 88999999887 67899999999999998
Q ss_pred hhccCCCCCCCchhhHHHHHHHHhhC
Q 038067 242 KAESRNNGRDVSGEGVQQALLKMLEG 267 (510)
Q Consensus 242 ~~~~~~~~~~~~~~~v~~~LL~~leg 267 (510)
.+++.+ .++ +.+++...||--|.|
T Consensus 239 g~r~en-Ese-asRRIKTEfLVQMqG 262 (439)
T KOG0739|consen 239 GSRSEN-ESE-ASRRIKTEFLVQMQG 262 (439)
T ss_pred cCCCCC-chH-HHHHHHHHHHHhhhc
Confidence 776533 233 334577777777764
No 47
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.70 E-value=1.5e-16 Score=174.33 Aligned_cols=199 Identities=23% Similarity=0.349 Sum_probs=136.4
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccccc----cccccchhhHHHHHHHhhchhHHHhcCcEEEE
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALTQA----GYVGEDAESVLYKLLAAADFDVEAAQRGIVYI 234 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~~~----gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~i 234 (510)
...+|||+|++|||||++|++|+... +.||+.+||..+.+. ..+|+. .+.+........+.+..+.+|+|||
T Consensus 218 ~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~~~~~lfg~~-~~~~~~~~~~~~g~~~~a~~GtL~l 296 (534)
T TIGR01817 218 SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELFGHE-KGAFTGAIAQRKGRFELADGGTLFL 296 (534)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHHHHHHHcCCC-CCccCCCCcCCCCcccccCCCeEEE
Confidence 55689999999999999999999987 569999999987532 122322 1111111111122345567899999
Q ss_pred cchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhc
Q 038067 235 DEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERR 314 (510)
Q Consensus 235 DEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~ 314 (510)
|||+.++.. +|..|+++|+.+.+. ..|+.. ....++.+|++++. ++++.+.
T Consensus 297 dei~~L~~~-------------~Q~~Ll~~l~~~~~~----~~~~~~--------~~~~~~riI~~s~~-~l~~~~~--- 347 (534)
T TIGR01817 297 DEIGEISPA-------------FQAKLLRVLQEGEFE----RVGGNR--------TLKVDVRLVAATNR-DLEEAVA--- 347 (534)
T ss_pred echhhCCHH-------------HHHHHHHHHhcCcEE----ECCCCc--------eEeecEEEEEeCCC-CHHHHHH---
Confidence 999999876 799999999855443 122111 12235566776651 2222111
Q ss_pred ccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCc-eEecCCCC--HHHHHHHHhchhHHHH
Q 038067 315 QDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPI-LVSLSALN--EDQLVQVLMEPKNALG 391 (510)
Q Consensus 315 ~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~-iv~f~~Ls--~eel~~Il~~~~~~l~ 391 (510)
+..|+++|..|++. .|.++||. .+|+..++...+
T Consensus 348 ---------------------------------------~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l---- 384 (534)
T TIGR01817 348 ---------------------------------------KGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFL---- 384 (534)
T ss_pred ---------------------------------------cCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHH----
Confidence 23489999999976 58899998 588888887543
Q ss_pred HHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHH
Q 038067 392 RQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILT 438 (510)
Q Consensus 392 ~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~ 438 (510)
.++... .+..+.+++++++.|.+ |.|.++.|+|++++++.+.
T Consensus 385 ~~~~~~---~~~~~~~s~~a~~~L~~--~~WPGNvrEL~~v~~~a~~ 426 (534)
T TIGR01817 385 EKFNRE---NGRPLTITPSAIRVLMS--CKWPGNVRELENCLERTAT 426 (534)
T ss_pred HHHHHH---cCCCCCCCHHHHHHHHh--CCCCChHHHHHHHHHHHHH
Confidence 333332 23336799999999998 5677789999999999875
No 48
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.69 E-value=5.1e-16 Score=163.52 Aligned_cols=186 Identities=24% Similarity=0.347 Sum_probs=126.7
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
++.++||+||||||||++|+++|+.++.+|+.+.++++.. .|+|+. ...++.+|..+ ....++||||||||.+.
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~-k~~ge~-~~~lr~lf~~A----~~~~P~ILfIDEID~i~ 251 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA----RENAPSIIFIDEVDSIA 251 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHH-Hhcchh-HHHHHHHHHHH----HhcCCeEEEEECHhhhc
Confidence 6789999999999999999999999999999999988864 477875 55677777654 34578999999999997
Q ss_pred hhccCCC-CCCCchhhHHHHHHH---HhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccC
Q 038067 242 KAESRNN-GRDVSGEGVQQALLK---MLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDS 317 (510)
Q Consensus 242 ~~~~~~~-~~~~~~~~v~~~LL~---~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~ 317 (510)
..+.... +.+ ..++..+.+ .+++- -...++.+|+++|..+
T Consensus 252 ~~r~~~~~~~d---~~~~r~l~~LL~~ld~~---------------------~~~~~v~VI~aTN~~d------------ 295 (398)
T PTZ00454 252 TKRFDAQTGAD---REVQRILLELLNQMDGF---------------------DQTTNVKVIMATNRAD------------ 295 (398)
T ss_pred cccccccCCcc---HHHHHHHHHHHHHhhcc---------------------CCCCCEEEEEecCCch------------
Confidence 5442211 111 124444444 44420 0124566777776211
Q ss_pred CCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhc--ccCceEecCCCCHHHHHHHHhchhHHHHHHHH
Q 038067 318 SIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIG--RFPILVSLSALNEDQLVQVLMEPKNALGRQYK 395 (510)
Q Consensus 318 ~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~--R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~ 395 (510)
.+.|+++. |||..|.|+.++.++...|++... .
T Consensus 296 --------------------------------------~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~----~--- 330 (398)
T PTZ00454 296 --------------------------------------TLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTIT----S--- 330 (398)
T ss_pred --------------------------------------hCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHH----h---
Confidence 15666664 999999999999999999987421 1
Q ss_pred HHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHHhc
Q 038067 396 KMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFE 443 (510)
Q Consensus 396 ~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~~ 443 (510)
..+..- +--+..++.. ..++.++.|+.++......++.+
T Consensus 331 ----~~~l~~---dvd~~~la~~--t~g~sgaDI~~l~~eA~~~A~r~ 369 (398)
T PTZ00454 331 ----KMNLSE---EVDLEDFVSR--PEKISAADIAAICQEAGMQAVRK 369 (398)
T ss_pred ----cCCCCc---ccCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHc
Confidence 112211 1234555653 34667788999888887777654
No 49
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.69 E-value=2.7e-16 Score=162.00 Aligned_cols=200 Identities=20% Similarity=0.294 Sum_probs=133.8
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccccc----cccccchhhHHHHHHHhhchhHHHhcCcEEEE
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALTQA----GYVGEDAESVLYKLLAAADFDVEAAQRGIVYI 234 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~~~----gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~i 234 (510)
...+|||+|++||||+++|++++... +.||+.+||..+.+. .++|+.. +.+........+.+..+.+|+|||
T Consensus 28 ~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~lfg~~~-~~~~g~~~~~~g~l~~a~gGtL~l 106 (326)
T PRK11608 28 LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEA-GAFTGAQKRHPGRFERADGGTLFL 106 (326)
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHHccccc-cccCCcccccCCchhccCCCeEEe
Confidence 45689999999999999999999877 469999999987531 1223321 111111111123345678899999
Q ss_pred cchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhc
Q 038067 235 DEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERR 314 (510)
Q Consensus 235 DEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~ 314 (510)
|||+.++.. +|..|+.+++.+.+. ..|+.. -...++.+|++++. ++.+.+.
T Consensus 107 ~~i~~L~~~-------------~Q~~L~~~l~~~~~~----~~g~~~--------~~~~~~RiI~~s~~-~l~~l~~--- 157 (326)
T PRK11608 107 DELATAPML-------------VQEKLLRVIEYGELE----RVGGSQ--------PLQVNVRLVCATNA-DLPAMVA--- 157 (326)
T ss_pred CChhhCCHH-------------HHHHHHHHHhcCcEE----eCCCCc--------eeeccEEEEEeCch-hHHHHHH---
Confidence 999999876 899999999854433 112111 11235666776551 2222111
Q ss_pred ccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCc-eEecCCCCH--HHHHHHHhchhHHHH
Q 038067 315 QDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPI-LVSLSALNE--DQLVQVLMEPKNALG 391 (510)
Q Consensus 315 ~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~-iv~f~~Ls~--eel~~Il~~~~~~l~ 391 (510)
+..|+++|..||.. .|.++||.+ +|+..++...+
T Consensus 158 ---------------------------------------~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl---- 194 (326)
T PRK11608 158 ---------------------------------------EGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFA---- 194 (326)
T ss_pred ---------------------------------------cCCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHH----
Confidence 13488899999954 689999986 67777776533
Q ss_pred HHHHHHHhcCCce--eeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHH
Q 038067 392 RQYKKMFSMNNVK--LHFTDDALRLIAKKAMAKNTGARGLRALLENILTE 439 (510)
Q Consensus 392 ~~~~~~~~~~~~~--l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~ 439 (510)
.++... .+.. ..+++++++.|.. |.|.++.|+|++++++.+..
T Consensus 195 ~~~~~~---~~~~~~~~~s~~al~~L~~--y~WPGNvrEL~~vl~~a~~~ 239 (326)
T PRK11608 195 IQMCRE---LGLPLFPGFTERARETLLN--YRWPGNIRELKNVVERSVYR 239 (326)
T ss_pred HHHHHH---hCCCCCCCCCHHHHHHHHh--CCCCcHHHHHHHHHHHHHHh
Confidence 333322 2333 4689999999998 56777899999999998763
No 50
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.69 E-value=6.6e-16 Score=162.84 Aligned_cols=190 Identities=25% Similarity=0.399 Sum_probs=130.5
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
++.++||+||||||||++|+++|+.++.+|+.++++++.. .|+|.. ...++.+|..+ ....++||||||||.+.
T Consensus 164 ~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~-~~~g~~-~~~i~~~f~~a----~~~~p~IlfiDEiD~l~ 237 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ-KFIGEG-ARLVRELFELA----REKAPSIIFIDEIDAIA 237 (389)
T ss_pred CCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH-hhccch-HHHHHHHHHHH----HhcCCeEEEEechhhhh
Confidence 6688999999999999999999999999999999999874 477876 56677777654 34567999999999998
Q ss_pred hhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCc
Q 038067 242 KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGF 321 (510)
Q Consensus 242 ~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf 321 (510)
..+..+... ....++..|++++.. -.+. -...++.+|+|+|..+
T Consensus 238 ~~r~~~~~~--~~~~~~~~l~~lL~~--------ld~~----------~~~~~v~VI~aTn~~~---------------- 281 (389)
T PRK03992 238 AKRTDSGTS--GDREVQRTLMQLLAE--------MDGF----------DPRGNVKIIAATNRID---------------- 281 (389)
T ss_pred cccccCCCC--ccHHHHHHHHHHHHh--------cccc----------CCCCCEEEEEecCChh----------------
Confidence 654322211 123466777776641 0010 0123566777766210
Q ss_pred CcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhh--cccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHh
Q 038067 322 GAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFI--GRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFS 399 (510)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl--~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~ 399 (510)
.+.|+++ +||+..|.|++++.++..+|++..+
T Consensus 282 ----------------------------------~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~------------ 315 (389)
T PRK03992 282 ----------------------------------ILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHT------------ 315 (389)
T ss_pred ----------------------------------hCCHHHcCCccCceEEEECCCCHHHHHHHHHHHh------------
Confidence 1455665 4999999999999999999997421
Q ss_pred cCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHHhc
Q 038067 400 MNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFE 443 (510)
Q Consensus 400 ~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~~ 443 (510)
.+..+. .+..+..|+.. ..++.++.|+.++......++.+
T Consensus 316 -~~~~~~-~~~~~~~la~~--t~g~sgadl~~l~~eA~~~a~~~ 355 (389)
T PRK03992 316 -RKMNLA-DDVDLEELAEL--TEGASGADLKAICTEAGMFAIRD 355 (389)
T ss_pred -ccCCCC-CcCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHc
Confidence 111111 11235666664 35667789999988877776664
No 51
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.68 E-value=6.2e-16 Score=168.54 Aligned_cols=203 Identities=20% Similarity=0.292 Sum_probs=138.3
Q ss_pred ccCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccccc----cccccchhhHHHHHHHhhchhHHHhcCcEEE
Q 038067 161 LEKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALTQA----GYVGEDAESVLYKLLAAADFDVEAAQRGIVY 233 (510)
Q Consensus 161 ~~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~~~----gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~ 233 (510)
....+|||+|++|||||++|++|+... +.||+.+||..+.+. ..+|+. .+.+........+.+..+.+|+||
T Consensus 208 ~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~lfG~~-~g~~~ga~~~~~g~~~~a~gGtL~ 286 (509)
T PRK05022 208 ASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGHV-KGAFTGAISNRSGKFELADGGTLF 286 (509)
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHhcCcc-ccccCCCcccCCcchhhcCCCEEE
Confidence 366789999999999999999999987 579999999988532 123332 111111111222345667899999
Q ss_pred EcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhh
Q 038067 234 IDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISER 313 (510)
Q Consensus 234 iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~ 313 (510)
||||+.++.. +|..|+++++.+.+. ..|+... ...++-+|++++. ++++.+.
T Consensus 287 ldeI~~L~~~-------------~Q~~Ll~~l~~~~~~----~~g~~~~--------~~~~~RiI~~t~~-~l~~~~~-- 338 (509)
T PRK05022 287 LDEIGELPLA-------------LQAKLLRVLQYGEIQ----RVGSDRS--------LRVDVRVIAATNR-DLREEVR-- 338 (509)
T ss_pred ecChhhCCHH-------------HHHHHHHHHhcCCEe----eCCCCcc--------eecceEEEEecCC-CHHHHHH--
Confidence 9999999876 899999999855443 1222111 1235566666652 2222221
Q ss_pred cccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCce-EecCCCCH--HHHHHHHhchhHHH
Q 038067 314 RQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPIL-VSLSALNE--DQLVQVLMEPKNAL 390 (510)
Q Consensus 314 ~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~i-v~f~~Ls~--eel~~Il~~~~~~l 390 (510)
+..|+++|..|+..+ |.++||.+ +|+..++.. +
T Consensus 339 ----------------------------------------~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~----f 374 (509)
T PRK05022 339 ----------------------------------------AGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGY----F 374 (509)
T ss_pred ----------------------------------------cCCccHHHHhcccccEeeCCCchhchhhHHHHHHH----H
Confidence 234889999999875 89999986 677777664 3
Q ss_pred HHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHH
Q 038067 391 GRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEA 440 (510)
Q Consensus 391 ~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~ 440 (510)
++++...+ ....+.+++++++.|.. |.|.++.|+|+++|++.+..+
T Consensus 375 l~~~~~~~--~~~~~~~s~~a~~~L~~--y~WPGNvrEL~~~i~ra~~~~ 420 (509)
T PRK05022 375 LEQNRARL--GLRSLRLSPAAQAALLA--YDWPGNVRELEHVISRAALLA 420 (509)
T ss_pred HHHHHHHc--CCCCCCCCHHHHHHHHh--CCCCCcHHHHHHHHHHHHHhc
Confidence 34443322 12346799999999998 667778999999999987654
No 52
>CHL00176 ftsH cell division protein; Validated
Probab=99.68 E-value=7.1e-16 Score=170.78 Aligned_cols=186 Identities=26% Similarity=0.383 Sum_probs=124.6
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
.+.++||+||||||||++|+++|..++.||+.++++++... |+|.. ...++.+|..+ ....++||||||||.+.
T Consensus 215 ~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~-~~g~~-~~~vr~lF~~A----~~~~P~ILfIDEID~l~ 288 (638)
T CHL00176 215 IPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEM-FVGVG-AARVRDLFKKA----KENSPCIVFIDEIDAVG 288 (638)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHH-hhhhh-HHHHHHHHHHH----hcCCCcEEEEecchhhh
Confidence 56789999999999999999999999999999999988743 66654 34567777665 34578999999999998
Q ss_pred hhccCCC-CCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCC
Q 038067 242 KAESRNN-GRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIG 320 (510)
Q Consensus 242 ~~~~~~~-~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~g 320 (510)
..+..+. +.+...+.+++.||..++|. ....++++|+++|..+
T Consensus 289 ~~r~~~~~~~~~e~~~~L~~LL~~~dg~---------------------~~~~~ViVIaaTN~~~--------------- 332 (638)
T CHL00176 289 RQRGAGIGGGNDEREQTLNQLLTEMDGF---------------------KGNKGVIVIAATNRVD--------------- 332 (638)
T ss_pred hcccCCCCCCcHHHHHHHHHHHhhhccc---------------------cCCCCeeEEEecCchH---------------
Confidence 6543221 11222234666667666531 0123566777766221
Q ss_pred cCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhh--cccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHH
Q 038067 321 FGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFI--GRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMF 398 (510)
Q Consensus 321 f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl--~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~ 398 (510)
.+.|+++ +|||..|.|..++.+++.+|++..+..
T Consensus 333 -----------------------------------~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~--------- 368 (638)
T CHL00176 333 -----------------------------------ILDAALLRPGRFDRQITVSLPDREGRLDILKVHARN--------- 368 (638)
T ss_pred -----------------------------------hhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhh---------
Confidence 1334444 599999999999999999999753211
Q ss_pred hcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHH
Q 038067 399 SMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEA 440 (510)
Q Consensus 399 ~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~ 440 (510)
. ...++..+..|++. ..++..+.|++++.+....+
T Consensus 369 ----~-~~~~d~~l~~lA~~--t~G~sgaDL~~lvneAal~a 403 (638)
T CHL00176 369 ----K-KLSPDVSLELIARR--TPGFSGADLANLLNEAAILT 403 (638)
T ss_pred ----c-ccchhHHHHHHHhc--CCCCCHHHHHHHHHHHHHHH
Confidence 0 11234456666654 23455677777777654433
No 53
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.68 E-value=2e-15 Score=155.67 Aligned_cols=182 Identities=24% Similarity=0.349 Sum_probs=124.3
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
++.+++|+||||||||++|+++|+.++.++...+...+... ..+..++.. ...+.|||||||+.+.
T Consensus 50 ~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~--------~~l~~~l~~------l~~~~vl~IDEi~~l~ 115 (328)
T PRK00080 50 ALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKP--------GDLAAILTN------LEEGDVLFIDEIHRLS 115 (328)
T ss_pred CCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccCh--------HHHHHHHHh------cccCCEEEEecHhhcc
Confidence 45689999999999999999999999988777665544321 122333322 1356899999999987
Q ss_pred hhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCc
Q 038067 242 KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGF 321 (510)
Q Consensus 242 ~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf 321 (510)
.. .++.|+.+|+...+.+.+ +.+. ....+.+....+.+|++++..
T Consensus 116 ~~-------------~~e~l~~~~e~~~~~~~l-~~~~----~~~~~~~~l~~~~li~at~~~----------------- 160 (328)
T PRK00080 116 PV-------------VEEILYPAMEDFRLDIMI-GKGP----AARSIRLDLPPFTLIGATTRA----------------- 160 (328)
T ss_pred hH-------------HHHHHHHHHHhcceeeee-ccCc----cccceeecCCCceEEeecCCc-----------------
Confidence 54 577888999865444321 1111 111122233445566665511
Q ss_pred CcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHhcC
Q 038067 322 GAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFSMN 401 (510)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~~~ 401 (510)
..+.+++.+||..++.|.+++.+++.+|++... .
T Consensus 161 ---------------------------------~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~-------------~ 194 (328)
T PRK00080 161 ---------------------------------GLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSA-------------R 194 (328)
T ss_pred ---------------------------------ccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHH-------------H
Confidence 126678999999999999999999999997421 1
Q ss_pred CceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHH
Q 038067 402 NVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAM 441 (510)
Q Consensus 402 ~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l 441 (510)
...+.++++++++|++.+ .+..|.+.++++++..-+.
T Consensus 195 ~~~~~~~~~~~~~ia~~~---~G~pR~a~~~l~~~~~~a~ 231 (328)
T PRK00080 195 ILGVEIDEEGALEIARRS---RGTPRIANRLLRRVRDFAQ 231 (328)
T ss_pred HcCCCcCHHHHHHHHHHc---CCCchHHHHHHHHHHHHHH
Confidence 235668999999999986 4557888888887654443
No 54
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=5.9e-16 Score=149.13 Aligned_cols=114 Identities=30% Similarity=0.500 Sum_probs=90.7
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
||+++|+|||||||||+||+++|+.....|+++..++|.+. |.|+. ..+++..|+.+ +++.++||||||||.++
T Consensus 188 pprgvllygppg~gktml~kava~~t~a~firvvgsefvqk-ylgeg-prmvrdvfrla----kenapsiifideidaia 261 (408)
T KOG0727|consen 188 PPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQK-YLGEG-PRMVRDVFRLA----KENAPSIIFIDEIDAIA 261 (408)
T ss_pred CCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHH-HhccC-cHHHHHHHHHH----hccCCcEEEeehhhhHh
Confidence 78999999999999999999999999999999999999965 99997 67888988876 56789999999999998
Q ss_pred hhc-cCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCC
Q 038067 242 KAE-SRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGA 302 (510)
Q Consensus 242 ~~~-~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~ 302 (510)
..+ ..+.+.| ++||..|+.+|.. -.|. =-++|+-+|+++|
T Consensus 262 tkrfdaqtgad---revqril~ellnq--------mdgf----------dq~~nvkvimatn 302 (408)
T KOG0727|consen 262 TKRFDAQTGAD---REVQRILIELLNQ--------MDGF----------DQTTNVKVIMATN 302 (408)
T ss_pred hhhcccccccc---HHHHHHHHHHHHh--------ccCc----------CcccceEEEEecC
Confidence 443 3333333 3589988888851 1120 1356777788777
No 55
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.66 E-value=9e-17 Score=153.26 Aligned_cols=166 Identities=20% Similarity=0.336 Sum_probs=68.4
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccc----------------cccccccchhhHHHHHH----Hhhc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALT----------------QAGYVGEDAESVLYKLL----AAAD 221 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~----------------~~gy~G~~~~~~l~~l~----~~~~ 221 (510)
.+.|+||+||||||||++|++++..+-. +.....-+.. ..-|.--.-......++ .-.+
T Consensus 21 G~h~lLl~GppGtGKTmlA~~l~~lLP~-l~~~e~le~~~i~s~~~~~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~P 99 (206)
T PF01078_consen 21 GGHHLLLIGPPGTGKTMLARRLPSLLPP-LTEEEALEVSKIYSVAGLGPDEGLIRQRPFRAPHHSASEAALIGGGRPPRP 99 (206)
T ss_dssp CC--EEEES-CCCTHHHHHHHHHHCS---CCEECCESS--S-TT---S---EEEE---EEEE-TT--HHHHHEEGGGEEE
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHhCCC-CchHHHhhhccccccccCCCCCceecCCCcccCCCCcCHHHHhCCCcCCCc
Confidence 4579999999999999999999988721 1011100000 00010000000011111 1235
Q ss_pred hhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCC
Q 038067 222 FDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGG 301 (510)
Q Consensus 222 ~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg 301 (510)
+.+..+++|||||||+..+.+. +++.|++.||.+.++|. +.+ .....-.++++|+|.
T Consensus 100 GeislAh~GVLflDE~~ef~~~-------------vld~Lr~ple~g~v~i~--R~~--------~~~~~Pa~f~lv~a~ 156 (206)
T PF01078_consen 100 GEISLAHRGVLFLDELNEFDRS-------------VLDALRQPLEDGEVTIS--RAG--------GSVTYPARFLLVAAM 156 (206)
T ss_dssp -CGGGGTTSEEEECETTTS-HH-------------HHHHHHHHHHHSBEEEE--ETT--------EEEEEB--EEEEEEE
T ss_pred CHHHHhcCCEEEechhhhcCHH-------------HHHHHHHHHHCCeEEEE--ECC--------ceEEEecccEEEEEe
Confidence 6778899999999999998665 99999999998888775 333 335566778888876
Q ss_pred CccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHH
Q 038067 302 AFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQ 378 (510)
Q Consensus 302 ~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~ee 378 (510)
| .+++||-......+..+ .....+++. .+.-+|++|||..|.+++++.+|
T Consensus 157 N-------------PcpCG~~~~~~~~C~Cs----~~~~~~Y~~----------rlsgpllDRiDi~v~~~~~~~~~ 206 (206)
T PF01078_consen 157 N-------------PCPCGYYGDPDNRCRCS----PRQIRRYQS----------RLSGPLLDRIDIHVEVPRVSYEE 206 (206)
T ss_dssp --------------S--------------------------------------------------------------
T ss_pred c-------------ccccccccccccccccc----ccccccccc----------cccccccccccccccccccccCC
Confidence 6 57788755433333221 112222232 25669999999999998887653
No 56
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.66 E-value=9.8e-16 Score=159.37 Aligned_cols=203 Identities=22% Similarity=0.326 Sum_probs=143.1
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh----CCCeEEEeccccccc----cccccchhhHHHHHHHhhchhHHHhcCcEEE
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV----NVPFTITDATALTQA----GYVGEDAESVLYKLLAAADFDVEAAQRGIVY 233 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l----~~p~~~~~~s~l~~~----gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~ 233 (510)
...++|++|+|||||+.+|+.|+... +.||+.+||+.+.+. ..+|+. .+.++.......+.++.+.+|+||
T Consensus 100 ~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eLFG~~-kGaftGa~~~k~Glfe~A~GGtLf 178 (403)
T COG1221 100 SGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAELFGHE-KGAFTGAQGGKAGLFEQANGGTLF 178 (403)
T ss_pred CCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHHHhccc-cceeecccCCcCchheecCCCEEe
Confidence 45789999999999999999999655 469999999998753 345664 455555555666778889999999
Q ss_pred EcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhh
Q 038067 234 IDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISER 313 (510)
Q Consensus 234 iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~ 313 (510)
||||..++.. .|..|+++||.+.++ +-|+.. ....++.+||+++- ++.+.+.
T Consensus 179 LDEI~~LP~~-------------~Q~kLl~~le~g~~~----rvG~~~--------~~~~dVRli~AT~~-~l~~~~~-- 230 (403)
T COG1221 179 LDEIHRLPPE-------------GQEKLLRVLEEGEYR----RVGGSQ--------PRPVDVRLICATTE-DLEEAVL-- 230 (403)
T ss_pred hhhhhhCCHh-------------HHHHHHHHHHcCceE----ecCCCC--------CcCCCceeeecccc-CHHHHHH--
Confidence 9999999887 799999999977665 344422 24467777887762 2222211
Q ss_pred cccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhc-ccCceEecCCCCHHHHHHHHhchhHHHHH
Q 038067 314 RQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIG-RFPILVSLSALNEDQLVQVLMEPKNALGR 392 (510)
Q Consensus 314 ~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~-R~~~iv~f~~Ls~eel~~Il~~~~~~l~~ 392 (510)
.| ..|.. |+..+|.++||.+- ..+|+... ..+++
T Consensus 231 -----------------------------------------~g--~dl~~rl~~~~I~LPpLrER-~~Di~~L~-e~Fl~ 265 (403)
T COG1221 231 -----------------------------------------AG--ADLTRRLNILTITLPPLRER-KEDILLLA-EHFLK 265 (403)
T ss_pred -----------------------------------------hh--cchhhhhcCceecCCChhhc-hhhHHHHH-HHHHH
Confidence 11 25555 67788999999875 44554321 12334
Q ss_pred HHHHHHhcCCceee-eCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHHhc
Q 038067 393 QYKKMFSMNNVKLH-FTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFE 443 (510)
Q Consensus 393 ~~~~~~~~~~~~l~-is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~~ 443 (510)
++... .+..+. .++++++.|.. |.+.++.|+|++.+++++..+-..
T Consensus 266 ~~~~~---l~~~~~~~~~~a~~~L~~--y~~pGNirELkN~Ve~~~~~~~~~ 312 (403)
T COG1221 266 SEARR---LGLPLSVDSPEALRALLA--YDWPGNIRELKNLVERAVAQASGE 312 (403)
T ss_pred HHHHH---cCCCCCCCCHHHHHHHHh--CCCCCcHHHHHHHHHHHHHHhccc
Confidence 44332 233333 34699999987 667777999999999999777443
No 57
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.65 E-value=4.2e-15 Score=151.38 Aligned_cols=178 Identities=23% Similarity=0.374 Sum_probs=118.2
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
.+.+++|+||||||||++|+++|+.++.++...++...... ..+...+.. ...+.|||||||+.+.
T Consensus 29 ~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~--------~~l~~~l~~------~~~~~vl~iDEi~~l~ 94 (305)
T TIGR00635 29 ALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKP--------GDLAAILTN------LEEGDVLFIDEIHRLS 94 (305)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCc--------hhHHHHHHh------cccCCEEEEehHhhhC
Confidence 34689999999999999999999999888766665443321 112222222 1346799999999987
Q ss_pred hhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCc
Q 038067 242 KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGF 321 (510)
Q Consensus 242 ~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf 321 (510)
+. .++.|+.+|++....+.+ ..+. ....+......+.+|.+++..
T Consensus 95 ~~-------------~~e~l~~~~~~~~~~~v~-~~~~----~~~~~~~~~~~~~li~~t~~~----------------- 139 (305)
T TIGR00635 95 PA-------------VEELLYPAMEDFRLDIVI-GKGP----SARSVRLDLPPFTLVGATTRA----------------- 139 (305)
T ss_pred HH-------------HHHHhhHHHhhhheeeee-ccCc----cccceeecCCCeEEEEecCCc-----------------
Confidence 54 578899999855443321 1110 011112222334444443310
Q ss_pred CcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHhcC
Q 038067 322 GAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFSMN 401 (510)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~~~ 401 (510)
..+.+++++||..++.|.+++.+++.++++... .
T Consensus 140 ---------------------------------~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~----~--------- 173 (305)
T TIGR00635 140 ---------------------------------GMLTSPLRDRFGIILRLEFYTVEELAEIVSRSA----G--------- 173 (305)
T ss_pred ---------------------------------cccCHHHHhhcceEEEeCCCCHHHHHHHHHHHH----H---------
Confidence 125678999999889999999999999997422 1
Q ss_pred CceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHH
Q 038067 402 NVKLHFTDDALRLIAKKAMAKNTGARGLRALLENIL 437 (510)
Q Consensus 402 ~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l 437 (510)
...+.++++++++|++.+ .+.+|.+.++++.+.
T Consensus 174 ~~~~~~~~~al~~ia~~~---~G~pR~~~~ll~~~~ 206 (305)
T TIGR00635 174 LLNVEIEPEAALEIARRS---RGTPRIANRLLRRVR 206 (305)
T ss_pred HhCCCcCHHHHHHHHHHh---CCCcchHHHHHHHHH
Confidence 124568999999999975 445788888887654
No 58
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.65 E-value=2.4e-15 Score=163.41 Aligned_cols=197 Identities=22% Similarity=0.320 Sum_probs=132.4
Q ss_pred cCceEEEEccCCChHHHHHHHHHHH--------h---CCCeEEEeccccccc----cccccchhhHHHHHHH-hhchhHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARI--------V---NVPFTITDATALTQA----GYVGEDAESVLYKLLA-AADFDVE 225 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~--------l---~~p~~~~~~s~l~~~----gy~G~~~~~~l~~l~~-~~~~~~~ 225 (510)
...+|||+|++||||+++|++|++. . +.||+.+||+.+.+. ..+|+. .+.++...+ ...+.++
T Consensus 241 s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~lleseLFG~~-~gaftga~~~~~~Gl~e 319 (538)
T PRK15424 241 SSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYE-EGAFTGSRRGGRAGLFE 319 (538)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhhHHHHhcCCc-cccccCccccccCCchh
Confidence 5678999999999999999999988 3 579999999987642 233433 222222211 1223455
Q ss_pred HhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccc
Q 038067 226 AAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVG 305 (510)
Q Consensus 226 ~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~ 305 (510)
.+++|+||||||+.|+.. +|..|+++|+.+.+. ..|+... -..++-+|++++. +
T Consensus 320 ~A~gGTLfLdeI~~Lp~~-------------~Q~kLl~~L~e~~~~----r~G~~~~--------~~~dvRiIaat~~-~ 373 (538)
T PRK15424 320 IAHGGTLFLDEIGEMPLP-------------LQTRLLRVLEEKEVT----RVGGHQP--------VPVDVRVISATHC-D 373 (538)
T ss_pred ccCCCEEEEcChHhCCHH-------------HHHHHHhhhhcCeEE----ecCCCce--------eccceEEEEecCC-C
Confidence 678999999999999877 899999999866554 2232211 1235566666652 2
Q ss_pred hHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCc-eEecCCCCH--HHHHHH
Q 038067 306 LEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPI-LVSLSALNE--DQLVQV 382 (510)
Q Consensus 306 l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~-iv~f~~Ls~--eel~~I 382 (510)
+++.+. +..|+++|..|+.. .|.++||.+ +|+..+
T Consensus 374 L~~~v~------------------------------------------~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L 411 (538)
T PRK15424 374 LEEDVR------------------------------------------QGRFRRDLFYRLSILRLQLPPLRERVADILPL 411 (538)
T ss_pred HHHHHh------------------------------------------cccchHHHHHHhcCCeecCCChhhchhHHHHH
Confidence 322221 12388899999976 588999976 677777
Q ss_pred HhchhHHHHHHHHHHHhcCCceeeeCHHHH-------HHHHHhhCCCCCChhHHHHHHHHHHH
Q 038067 383 LMEPKNALGRQYKKMFSMNNVKLHFTDDAL-------RLIAKKAMAKNTGARGLRALLENILT 438 (510)
Q Consensus 383 l~~~~~~l~~~~~~~~~~~~~~l~is~~al-------~~La~~~~~~~~gaR~L~~~ie~~l~ 438 (510)
+.. +++++... ....++++++ +.|.. |.|.++.|+|++++++++.
T Consensus 412 ~~~----fl~~~~~~-----~~~~~~~~a~~~~~~a~~~L~~--y~WPGNvREL~nvier~~i 463 (538)
T PRK15424 412 AES----FLKQSLAA-----LSAPFSAALRQGLQQCETLLLH--YDWPGNVRELRNLMERLAL 463 (538)
T ss_pred HHH----HHHHHHHH-----cCCCCCHHHHHhhHHHHHHHHh--CCCCchHHHHHHHHHHHHH
Confidence 765 33333221 1223666666 55555 6788889999999999876
No 59
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.64 E-value=3e-15 Score=162.72 Aligned_cols=199 Identities=22% Similarity=0.359 Sum_probs=135.6
Q ss_pred ccCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccccc----cccccchhhHHHHHHH-hhchhHHHhcCcEE
Q 038067 161 LEKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALTQA----GYVGEDAESVLYKLLA-AADFDVEAAQRGIV 232 (510)
Q Consensus 161 ~~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~~~----gy~G~~~~~~l~~l~~-~~~~~~~~~~~~Vl 232 (510)
....+||++|++||||+++|++|+... +.||+.+||..+.+. ..+|+. ++.++...+ ...+.++.+++|+|
T Consensus 233 ~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~lleseLFG~~-~gaftga~~~~~~Gl~e~A~gGTL 311 (526)
T TIGR02329 233 RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGYE-EGAFTGARRGGRTGLIEAAHRGTL 311 (526)
T ss_pred CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHHHHhcCCc-ccccccccccccccchhhcCCceE
Confidence 366789999999999999999999876 569999999988532 233443 222222211 12234456788999
Q ss_pred EEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHh
Q 038067 233 YIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISE 312 (510)
Q Consensus 233 ~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~ 312 (510)
|||||+.|+.. +|..|+++|+.+.+. ..|+.. .-..++-+|++++. ++.+.+.
T Consensus 312 fLdeI~~Lp~~-------------~Q~~Ll~~L~~~~~~----r~g~~~--------~~~~dvRiIaat~~-~l~~~v~- 364 (526)
T TIGR02329 312 FLDEIGEMPLP-------------LQTRLLRVLEEREVV----RVGGTE--------PVPVDVRVVAATHC-ALTTAVQ- 364 (526)
T ss_pred EecChHhCCHH-------------HHHHHHHHHhcCcEE----ecCCCc--------eeeecceEEeccCC-CHHHHhh-
Confidence 99999999876 899999999865543 122211 12235566666551 2222111
Q ss_pred hcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCc-eEecCCCCH--HHHHHHHhchhHH
Q 038067 313 RRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPI-LVSLSALNE--DQLVQVLMEPKNA 389 (510)
Q Consensus 313 ~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~-iv~f~~Ls~--eel~~Il~~~~~~ 389 (510)
...|+++|..|++. .|.++||.+ +|+..++...+
T Consensus 365 -----------------------------------------~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl-- 401 (526)
T TIGR02329 365 -----------------------------------------QGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYL-- 401 (526)
T ss_pred -----------------------------------------hcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHH--
Confidence 12488899999975 689999986 67877777533
Q ss_pred HHHHHHHHHhcCCceeeeCHHHHHH-------HHHhhCCCCCChhHHHHHHHHHHHH
Q 038067 390 LGRQYKKMFSMNNVKLHFTDDALRL-------IAKKAMAKNTGARGLRALLENILTE 439 (510)
Q Consensus 390 l~~~~~~~~~~~~~~l~is~~al~~-------La~~~~~~~~gaR~L~~~ie~~l~~ 439 (510)
+++... ..+.+++++++. |.. |.|.++.|+|++++++++..
T Consensus 402 --~~~~~~-----~~~~~~~~a~~~~~~~~~~L~~--y~WPGNvrEL~nvier~~i~ 449 (526)
T TIGR02329 402 --VQAAAA-----LRLPDSEAAAQVLAGVADPLQR--YPWPGNVRELRNLVERLALE 449 (526)
T ss_pred --HHHHHH-----cCCCCCHHHHHHhHHHHHHHHh--CCCCchHHHHHHHHHHHHHh
Confidence 333321 123589999888 766 67788899999999998754
No 60
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=7.7e-16 Score=148.16 Aligned_cols=150 Identities=29% Similarity=0.473 Sum_probs=115.1
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
.|.++||+||||||||.+|+++|......|++++.+++.+. |+|+. ...++++|-.+ ++..++|||.||||.+.
T Consensus 180 QPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk-~igeg-srmvrelfvma----rehapsiifmdeidsig 253 (404)
T KOG0728|consen 180 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK-YIGEG-SRMVRELFVMA----REHAPSIIFMDEIDSIG 253 (404)
T ss_pred CCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHH-Hhhhh-HHHHHHHHHHH----HhcCCceEeeecccccc
Confidence 67889999999999999999999999999999999999965 99997 67889998776 56788999999999999
Q ss_pred hhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCc
Q 038067 242 KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGF 321 (510)
Q Consensus 242 ~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf 321 (510)
.++..+.+. +.-+||...|.+|.. -+| .-.|.|+-+|+++|..++
T Consensus 254 s~r~e~~~g--gdsevqrtmlellnq--------ldg----------featknikvimatnridi--------------- 298 (404)
T KOG0728|consen 254 SSRVESGSG--GDSEVQRTMLELLNQ--------LDG----------FEATKNIKVIMATNRIDI--------------- 298 (404)
T ss_pred cccccCCCC--ccHHHHHHHHHHHHh--------ccc----------cccccceEEEEecccccc---------------
Confidence 776543322 112589988888851 112 124567777777762210
Q ss_pred CcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhc
Q 038067 322 GAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLME 385 (510)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~ 385 (510)
++| .-++| +|||..|.|+|++++...+|++.
T Consensus 299 -------------------------ld~-----allrp---gridrkiefp~p~e~ar~~ilki 329 (404)
T KOG0728|consen 299 -------------------------LDP-----ALLRP---GRIDRKIEFPPPNEEARLDILKI 329 (404)
T ss_pred -------------------------ccH-----hhcCC---CcccccccCCCCCHHHHHHHHHH
Confidence 000 11333 79999999999999999999975
No 61
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.64 E-value=3.2e-15 Score=158.77 Aligned_cols=189 Identities=24% Similarity=0.363 Sum_probs=123.6
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
++.++||+||||||||++|+++|+.++.+|+.++++++... |+|+. ...++.+|..+ ....++||||||||.+.
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k-~~Ge~-~~~vr~lF~~A----~~~~P~ILfIDEID~l~ 289 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQK-YLGDG-PKLVRELFRVA----EENAPSIVFIDEIDAIG 289 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhh-hcchH-HHHHHHHHHHH----HhCCCcEEeHHHHHHHh
Confidence 66789999999999999999999999999999999988754 88876 45667777654 33567899999999998
Q ss_pred hhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCc
Q 038067 242 KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGF 321 (510)
Q Consensus 242 ~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf 321 (510)
..+...... ....++..++.+|.. -.+ .-...++.+|+++|..+
T Consensus 290 ~kR~~~~sg--g~~e~qr~ll~LL~~--------Ldg----------~~~~~~V~VI~ATNr~d---------------- 333 (438)
T PTZ00361 290 TKRYDATSG--GEKEIQRTMLELLNQ--------LDG----------FDSRGDVKVIMATNRIE---------------- 333 (438)
T ss_pred ccCCCCCCc--ccHHHHHHHHHHHHH--------Hhh----------hcccCCeEEEEecCChH----------------
Confidence 554321111 112345555554430 000 00123566677666210
Q ss_pred CcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhh--cccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHh
Q 038067 322 GAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFI--GRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFS 399 (510)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl--~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~ 399 (510)
.+.|+++ +||+..|.|++++.+++.+|+.....
T Consensus 334 ----------------------------------~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~----------- 368 (438)
T PTZ00361 334 ----------------------------------SLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS----------- 368 (438)
T ss_pred ----------------------------------HhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh-----------
Confidence 1455665 59999999999999999999974211
Q ss_pred cCCceeeeCHH-HHHHHHHhhCCCCCChhHHHHHHHHHHHHHHhc
Q 038067 400 MNNVKLHFTDD-ALRLIAKKAMAKNTGARGLRALLENILTEAMFE 443 (510)
Q Consensus 400 ~~~~~l~is~~-al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~~ 443 (510)
+.. ++++ -+..++.. ..++.+..++.++......++.+
T Consensus 369 --k~~--l~~dvdl~~la~~--t~g~sgAdI~~i~~eA~~~Alr~ 407 (438)
T PTZ00361 369 --KMT--LAEDVDLEEFIMA--KDELSGADIKAICTEAGLLALRE 407 (438)
T ss_pred --cCC--CCcCcCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHh
Confidence 111 1221 23444443 34566777888877766666553
No 62
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=4.1e-15 Score=158.20 Aligned_cols=163 Identities=24% Similarity=0.332 Sum_probs=113.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhCCC------------------------eEEEeccccccccccccchhhHHHHHHHh
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVNVP------------------------FTITDATALTQAGYVGEDAESVLYKLLAA 219 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~~p------------------------~~~~~~s~l~~~gy~G~~~~~~l~~l~~~ 219 (510)
+.+||+||+|||||++|+.+|+.++.. ++.+|+.. ..| ...++++...
T Consensus 41 ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas-----~~g---Vd~IReL~e~ 112 (484)
T PRK14956 41 HAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAAS-----NRG---IENIRELRDN 112 (484)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechhh-----ccc---HHHHHHHHHH
Confidence 458999999999999999999998542 11222110 011 1223444333
Q ss_pred hchhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeec
Q 038067 220 ADFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFIC 299 (510)
Q Consensus 220 ~~~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~ 299 (510)
..+........|++|||+|.+... .+++||+.||. ...+++||+
T Consensus 113 l~~~p~~g~~KV~IIDEah~Ls~~-------------A~NALLKtLEE-----------------------Pp~~viFIL 156 (484)
T PRK14956 113 VKFAPMGGKYKVYIIDEVHMLTDQ-------------SFNALLKTLEE-----------------------PPAHIVFIL 156 (484)
T ss_pred HHhhhhcCCCEEEEEechhhcCHH-------------HHHHHHHHhhc-----------------------CCCceEEEe
Confidence 222112234569999999999765 69999999983 124567777
Q ss_pred CCCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHH
Q 038067 300 GGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQL 379 (510)
Q Consensus 300 tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel 379 (510)
+++.. ..+.|.+++|+.. +.|.+++.+++
T Consensus 157 aTte~--------------------------------------------------~kI~~TI~SRCq~-~~f~~ls~~~i 185 (484)
T PRK14956 157 ATTEF--------------------------------------------------HKIPETILSRCQD-FIFKKVPLSVL 185 (484)
T ss_pred ecCCh--------------------------------------------------hhccHHHHhhhhe-eeecCCCHHHH
Confidence 66510 1267899999965 59999999998
Q ss_pred HHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHH
Q 038067 380 VQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENIL 437 (510)
Q Consensus 380 ~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l 437 (510)
.+.++. +. ...+ +.++++++..|++.+ .++.|..-++++.++
T Consensus 186 ~~~L~~----i~-------~~Eg--i~~e~eAL~~Ia~~S---~Gd~RdAL~lLeq~i 227 (484)
T PRK14956 186 QDYSEK----LC-------KIEN--VQYDQEGLFWIAKKG---DGSVRDMLSFMEQAI 227 (484)
T ss_pred HHHHHH----HH-------HHcC--CCCCHHHHHHHHHHc---CChHHHHHHHHHHHH
Confidence 887764 11 1123 678999999999987 777999999998766
No 63
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.63 E-value=5.1e-15 Score=161.59 Aligned_cols=199 Identities=20% Similarity=0.293 Sum_probs=133.6
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccccc----cccccchhhHHHHHHHhhchhHHHhcCcEEEE
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALTQA----GYVGEDAESVLYKLLAAADFDVEAAQRGIVYI 234 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~~~----gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~i 234 (510)
...++||+|++||||+++|++++... +.||+.+||+.+.+. ..+|+.. +.+........+.+..+.+|+|||
T Consensus 226 ~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~elFG~~~-~~~~~~~~~~~g~~e~a~~GtL~L 304 (520)
T PRK10820 226 LDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAP-GAYPNALEGKKGFFEQANGGSVLL 304 (520)
T ss_pred CCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHHHHhcCCCC-CCcCCcccCCCChhhhcCCCEEEE
Confidence 45679999999999999999998876 469999999987532 1223221 111111111123345677899999
Q ss_pred cchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhc
Q 038067 235 DEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERR 314 (510)
Q Consensus 235 DEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~ 314 (510)
|||+.|+.. +|..|+++++.+.++ ..|... -...++.+|++++. ++.
T Consensus 305 deI~~L~~~-------------~Q~~Ll~~l~~~~~~----~~g~~~--------~~~~~vRiI~st~~-~l~------- 351 (520)
T PRK10820 305 DEIGEMSPR-------------MQAKLLRFLNDGTFR----RVGEDH--------EVHVDVRVICATQK-NLV------- 351 (520)
T ss_pred eChhhCCHH-------------HHHHHHHHHhcCCcc----cCCCCc--------ceeeeeEEEEecCC-CHH-------
Confidence 999999876 899999999854432 122211 12345667776551 222
Q ss_pred ccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhh-cCCchhhhcccCc-eEecCCCCH--HHHHHHHhchhHHH
Q 038067 315 QDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVA-YGLIPEFIGRFPI-LVSLSALNE--DQLVQVLMEPKNAL 390 (510)
Q Consensus 315 ~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~-~~~~Pefl~R~~~-iv~f~~Ls~--eel~~Il~~~~~~l 390 (510)
+++. ..|+++|..|+.. .|.++||.+ +|+..++.. +
T Consensus 352 ------------------------------------~l~~~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~----f 391 (520)
T PRK10820 352 ------------------------------------ELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTEL----F 391 (520)
T ss_pred ------------------------------------HHHHcCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHH----H
Confidence 2222 3388899999875 588999986 567777664 3
Q ss_pred HHHHHHHHhcCCc-eeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHH
Q 038067 391 GRQYKKMFSMNNV-KLHFTDDALRLIAKKAMAKNTGARGLRALLENILTE 439 (510)
Q Consensus 391 ~~~~~~~~~~~~~-~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~ 439 (510)
+.++... .+. ...+++++++.|.. |.|.++.|+|++++++.+..
T Consensus 392 l~~~~~~---~g~~~~~ls~~a~~~L~~--y~WPGNvreL~nvl~~a~~~ 436 (520)
T PRK10820 392 VARFADE---QGVPRPKLAADLNTVLTR--YGWPGNVRQLKNAIYRALTQ 436 (520)
T ss_pred HHHHHHH---cCCCCCCcCHHHHHHHhc--CCCCCHHHHHHHHHHHHHHh
Confidence 3444332 232 34699999999987 56777899999999998853
No 64
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.62 E-value=3.7e-15 Score=162.84 Aligned_cols=197 Identities=21% Similarity=0.304 Sum_probs=124.4
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh----------CCCeEEEecccc--ccccc----cccchhhHH--------HHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV----------NVPFTITDATAL--TQAGY----VGEDAESVL--------YKLL 217 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l----------~~p~~~~~~s~l--~~~gy----~G~~~~~~l--------~~l~ 217 (510)
.+.++||+||||||||++|+++++.+ +.||+.+||+.. .+.++ +|....... ....
T Consensus 85 ~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~ 164 (531)
T TIGR02902 85 NPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIP 164 (531)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcc
Confidence 34689999999999999999998753 358999998742 11111 110000000 0000
Q ss_pred HhhchhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCC-----CCC-CcE--E
Q 038067 218 AAADFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKH-----PRG-DNI--P 289 (510)
Q Consensus 218 ~~~~~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~-----~~~-~~i--~ 289 (510)
+...+.+..+++++||||||++|+.. .|+.|+++||.+.+.+. .+.... +.. +.+ .
T Consensus 165 ~~~~G~l~~a~gG~L~IdEI~~L~~~-------------~q~~LL~~Le~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 228 (531)
T TIGR02902 165 QPKPGAVTRAHGGVLFIDEIGELHPV-------------QMNKLLKVLEDRKVFLD---SAYYNSENPNIPSHIHDIFQN 228 (531)
T ss_pred cccCchhhccCCcEEEEechhhCCHH-------------HHHHHHHHHHhCeeeec---cccccccCcccccchhhhccc
Confidence 11233456678899999999999876 79999999996655432 110000 000 000 0
Q ss_pred EEcCCceeecCCCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceE
Q 038067 290 IDTKDILFICGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILV 369 (510)
Q Consensus 290 i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv 369 (510)
--..++.+|++++. .| ..+.|++++|+.. +
T Consensus 229 ~~~~d~rlI~ATt~--------------------------------------------~p-----~~L~paLrsR~~~-I 258 (531)
T TIGR02902 229 GLPADFRLIGATTR--------------------------------------------NP-----EEIPPALRSRCVE-I 258 (531)
T ss_pred CcccceEEEEEecC--------------------------------------------Cc-----ccCChHHhhhhhe-e
Confidence 01234455554441 01 1267899999865 5
Q ss_pred ecCCCCHHHHHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHH
Q 038067 370 SLSALNEDQLVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAM 441 (510)
Q Consensus 370 ~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l 441 (510)
.|++|+.+++.+|++..+ + ...+.+++++++.|+.+++ +.|.+.++++.....+.
T Consensus 259 ~f~pL~~eei~~Il~~~a----~---------k~~i~is~~al~~I~~y~~----n~Rel~nll~~Aa~~A~ 313 (531)
T TIGR02902 259 FFRPLLDEEIKEIAKNAA----E---------KIGINLEKHALELIVKYAS----NGREAVNIVQLAAGIAL 313 (531)
T ss_pred eCCCCCHHHHHHHHHHHH----H---------HcCCCcCHHHHHHHHHhhh----hHHHHHHHHHHHHHHHh
Confidence 899999999999997522 1 1236789999999988653 57999999998765443
No 65
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=3.3e-15 Score=160.61 Aligned_cols=187 Identities=30% Similarity=0.428 Sum_probs=131.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
-+.++|||||||||||.||-++|..++..|+.+-..++-. .|+|.+ ++.++.+|.++ +.+.+||+|+||+|.++
T Consensus 700 ~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~-KyIGaS-Eq~vR~lF~rA----~~a~PCiLFFDEfdSiA 773 (952)
T KOG0735|consen 700 LRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLS-KYIGAS-EQNVRDLFERA----QSAKPCILFFDEFDSIA 773 (952)
T ss_pred cccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHH-HHhccc-HHHHHHHHHHh----hccCCeEEEeccccccC
Confidence 5578999999999999999999999999999999999884 499998 78899999887 56899999999999999
Q ss_pred hhccCCCCCCCch--hhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCC
Q 038067 242 KAESRNNGRDVSG--EGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSI 319 (510)
Q Consensus 242 ~~~~~~~~~~~~~--~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~ 319 (510)
+.+. +|..| ++|.+.||.-|||... ...+.++++++..+|
T Consensus 774 PkRG----hDsTGVTDRVVNQlLTelDG~Eg---------------------l~GV~i~aaTsRpdl------------- 815 (952)
T KOG0735|consen 774 PKRG----HDSTGVTDRVVNQLLTELDGAEG---------------------LDGVYILAATSRPDL------------- 815 (952)
T ss_pred cccC----CCCCCchHHHHHHHHHhhccccc---------------------cceEEEEEecCCccc-------------
Confidence 7653 22222 4799999999996322 122333333331111
Q ss_pred CcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHh
Q 038067 320 GFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFS 399 (510)
Q Consensus 320 gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~ 399 (510)
++| .-++| +|+|..|.-+.+++.+..+|++. +..
T Consensus 816 ---------------------------iDp-----ALLRp---GRlD~~v~C~~P~~~eRl~il~~----ls~------- 849 (952)
T KOG0735|consen 816 ---------------------------IDP-----ALLRP---GRLDKLVYCPLPDEPERLEILQV----LSN------- 849 (952)
T ss_pred ---------------------------cCH-----hhcCC---CccceeeeCCCCCcHHHHHHHHH----Hhh-------
Confidence 001 11344 79999999999999999999873 211
Q ss_pred cCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHHhc
Q 038067 400 MNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFE 443 (510)
Q Consensus 400 ~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~~ 443 (510)
....-++-.++.+|.. ..++..-.|+.++-+.-+.++-+
T Consensus 850 ---s~~~~~~vdl~~~a~~--T~g~tgADlq~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 850 ---SLLKDTDVDLECLAQK--TDGFTGADLQSLLYNAQLAAVHE 888 (952)
T ss_pred ---ccCCccccchHHHhhh--cCCCchhhHHHHHHHHHHHHHHH
Confidence 1122235567778875 33444456777776654444443
No 66
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.61 E-value=4.4e-15 Score=149.45 Aligned_cols=176 Identities=23% Similarity=0.359 Sum_probs=122.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhCCC---eEEEeccccccccccccchhhHHHHHHHhhchhHH-HhcCcEEEEcchhh
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVNVP---FTITDATALTQAGYVGEDAESVLYKLLAAADFDVE-AAQRGIVYIDEVDK 239 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~~p---~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~-~~~~~Vl~iDEidk 239 (510)
.+++||||||||||+||+.|+.....+ |+.++++.-. -.-++..|+++..... -....|||||||++
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~---------t~dvR~ife~aq~~~~l~krkTilFiDEiHR 233 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAK---------TNDVRDIFEQAQNEKSLTKRKTILFIDEIHR 233 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccc---------hHHHHHHHHHHHHHHhhhcceeEEEeHHhhh
Confidence 579999999999999999999988555 7777776543 2335566655533222 24568999999999
Q ss_pred hhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCC
Q 038067 240 IVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSI 319 (510)
Q Consensus 240 l~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~ 319 (510)
+.++. |+.||...|.+.+ ++|-+++
T Consensus 234 FNksQ-------------QD~fLP~VE~G~I-------------------------~lIGATT----------------- 258 (554)
T KOG2028|consen 234 FNKSQ-------------QDTFLPHVENGDI-------------------------TLIGATT----------------- 258 (554)
T ss_pred hhhhh-------------hhcccceeccCce-------------------------EEEeccc-----------------
Confidence 98873 8889999874332 2332221
Q ss_pred CcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHh
Q 038067 320 GFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFS 399 (510)
Q Consensus 320 gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~ 399 (510)
+.+ .+.++.+|++|+.++ .+.+|..+++..|+.+.++.+.+.-+..-.
T Consensus 259 -------------ENP------------------SFqln~aLlSRC~Vf-vLekL~~n~v~~iL~raia~l~dser~~~~ 306 (554)
T KOG2028|consen 259 -------------ENP------------------SFQLNAALLSRCRVF-VLEKLPVNAVVTILMRAIASLGDSERPTDP 306 (554)
T ss_pred -------------CCC------------------ccchhHHHHhcccee-EeccCCHHHHHHHHHHHHHhhccccccCCC
Confidence 111 134677899999775 799999999999999876655532111011
Q ss_pred cCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHH
Q 038067 400 MNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILT 438 (510)
Q Consensus 400 ~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~ 438 (510)
..+-.+.+++.++++|+..+ .+.||.--+.+|-.+.
T Consensus 307 l~n~s~~ve~siidyla~ls---dGDaR~aLN~Lems~~ 342 (554)
T KOG2028|consen 307 LPNSSMFVEDSIIDYLAYLS---DGDARAALNALEMSLS 342 (554)
T ss_pred CCCcchhhhHHHHHHHHHhc---CchHHHHHHHHHHHHH
Confidence 12333568899999999875 6678988888887654
No 67
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.61 E-value=1.6e-14 Score=162.97 Aligned_cols=201 Identities=19% Similarity=0.316 Sum_probs=134.6
Q ss_pred ccCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccccc----cccccchhhHHHHHHHhhchhHHHhcCcEEE
Q 038067 161 LEKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALTQA----GYVGEDAESVLYKLLAAADFDVEAAQRGIVY 233 (510)
Q Consensus 161 ~~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~~~----gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~ 233 (510)
....+|||+|++|||||++|++|+... +.||+.+||..+... .++|+.. +.+........+.+..+.+|+||
T Consensus 397 ~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~lfg~~~-~~~~g~~~~~~g~le~a~~GtL~ 475 (686)
T PRK15429 397 QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHER-GAFTGASAQRIGRFELADKSSLF 475 (686)
T ss_pred CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhhhcCccc-ccccccccchhhHHHhcCCCeEE
Confidence 356789999999999999999999877 569999999987531 1233321 11111111112234556789999
Q ss_pred EcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhh
Q 038067 234 IDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISER 313 (510)
Q Consensus 234 iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~ 313 (510)
||||+.++.. +|..|+++|+.+.+. ..|+... ...++-+|++++. ++++.+.
T Consensus 476 Ldei~~L~~~-------------~Q~~L~~~l~~~~~~----~~g~~~~--------~~~~~RiI~~t~~-~l~~~~~-- 527 (686)
T PRK15429 476 LDEVGDMPLE-------------LQPKLLRVLQEQEFE----RLGSNKI--------IQTDVRLIAATNR-DLKKMVA-- 527 (686)
T ss_pred EechhhCCHH-------------HHHHHHHHHHhCCEE----eCCCCCc--------ccceEEEEEeCCC-CHHHHHH--
Confidence 9999999876 899999999855443 1222211 1235566666652 2222221
Q ss_pred cccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCce-EecCCCCH--HHHHHHHhchhHHH
Q 038067 314 RQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPIL-VSLSALNE--DQLVQVLMEPKNAL 390 (510)
Q Consensus 314 ~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~i-v~f~~Ls~--eel~~Il~~~~~~l 390 (510)
+..|+++|..|+... |.++||.+ +|+..++.. +
T Consensus 528 ----------------------------------------~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~----~ 563 (686)
T PRK15429 528 ----------------------------------------DREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKA----F 563 (686)
T ss_pred ----------------------------------------cCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHH----H
Confidence 234888999999774 88999975 667666664 3
Q ss_pred HHHHHHHHhcCCcee-eeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHH
Q 038067 391 GRQYKKMFSMNNVKL-HFTDDALRLIAKKAMAKNTGARGLRALLENILTE 439 (510)
Q Consensus 391 ~~~~~~~~~~~~~~l-~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~ 439 (510)
+.++... .+..+ .+++++++.|.. |.|.++.|+|++++++.+..
T Consensus 564 l~~~~~~---~~~~~~~~s~~al~~L~~--y~WPGNvrEL~~~i~~a~~~ 608 (686)
T PRK15429 564 TFKIARR---MGRNIDSIPAETLRTLSN--MEWPGNVRELENVIERAVLL 608 (686)
T ss_pred HHHHHHH---cCCCCCCcCHHHHHHHHh--CCCCCcHHHHHHHHHHHHHh
Confidence 3333332 23343 589999999988 56788899999999998853
No 68
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.61 E-value=1.4e-14 Score=162.29 Aligned_cols=196 Identities=20% Similarity=0.292 Sum_probs=133.0
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccccc----cccccchhhHHHHHHHhhchhHHHhcCcEEEE
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALTQA----GYVGEDAESVLYKLLAAADFDVEAAQRGIVYI 234 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~~~----gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~i 234 (510)
...+|||+|++||||+++|+++++.. +.||+.+||..+.+. .++|+..... .....+.+..+.+|+|||
T Consensus 347 ~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~~elfg~~~~~~----~~~~~g~~~~a~~GtL~l 422 (638)
T PRK11388 347 SSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLGSDRTDS----ENGRLSKFELAHGGTLFL 422 (638)
T ss_pred cCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHHHHHHhcCCCCcCc----cCCCCCceeECCCCEEEE
Confidence 55679999999999999999999987 469999999987531 1233220000 000112244567899999
Q ss_pred cchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhc
Q 038067 235 DEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERR 314 (510)
Q Consensus 235 DEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~ 314 (510)
|||+.|+.. +|..|+++|+.+.++ ..|+.. . ...++.+|+|++. ++.+.+.
T Consensus 423 dei~~l~~~-------------~Q~~Ll~~l~~~~~~----~~~~~~-----~---~~~~~riI~~t~~-~l~~~~~--- 473 (638)
T PRK11388 423 EKVEYLSPE-------------LQSALLQVLKTGVIT----RLDSRR-----L---IPVDVRVIATTTA-DLAMLVE--- 473 (638)
T ss_pred cChhhCCHH-------------HHHHHHHHHhcCcEE----eCCCCc-----e---EEeeEEEEEeccC-CHHHHHh---
Confidence 999999876 899999999855443 122111 1 1224556666652 2222221
Q ss_pred ccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCc-eEecCCCCH--HHHHHHHhchhHHHH
Q 038067 315 QDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPI-LVSLSALNE--DQLVQVLMEPKNALG 391 (510)
Q Consensus 315 ~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~-iv~f~~Ls~--eel~~Il~~~~~~l~ 391 (510)
...|+++|..|+.. .|.++||.+ +|+..++...+
T Consensus 474 ---------------------------------------~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l---- 510 (638)
T PRK11388 474 ---------------------------------------QNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKL---- 510 (638)
T ss_pred ---------------------------------------cCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHH----
Confidence 13488899999976 488999986 57877777533
Q ss_pred HHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHH
Q 038067 392 RQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILT 438 (510)
Q Consensus 392 ~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~ 438 (510)
.++... .+..+.+++++++.|.+ |.|.++.|+|++++++.+.
T Consensus 511 ~~~~~~---~~~~~~~s~~a~~~L~~--y~WPGNvreL~~~l~~~~~ 552 (638)
T PRK11388 511 RSLEKR---FSTRLKIDDDALARLVS--YRWPGNDFELRSVIENLAL 552 (638)
T ss_pred HHHHHH---hCCCCCcCHHHHHHHHc--CCCCChHHHHHHHHHHHHH
Confidence 333322 23346799999999998 5667779999999999775
No 69
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=6.4e-15 Score=159.59 Aligned_cols=100 Identities=32% Similarity=0.519 Sum_probs=87.0
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
-|.+++|+||||||||+|||++|.+.++||+.++.+++.+. |+|.. ...++++|.++ .++.+|||||||||.+.
T Consensus 182 iPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem-fVGvG-AsRVRdLF~qA----kk~aP~IIFIDEiDAvG 255 (596)
T COG0465 182 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVG-ASRVRDLFEQA----KKNAPCIIFIDEIDAVG 255 (596)
T ss_pred cccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh-hcCCC-cHHHHHHHHHh----hccCCCeEEEehhhhcc
Confidence 67899999999999999999999999999999999999976 88887 67889999887 45678999999999999
Q ss_pred hhccCC-CCCCCchhhHHHHHHHHhhC
Q 038067 242 KAESRN-NGRDVSGEGVQQALLKMLEG 267 (510)
Q Consensus 242 ~~~~~~-~~~~~~~~~v~~~LL~~leg 267 (510)
+.+... ++....+++.++.||.-|||
T Consensus 256 r~Rg~g~GggnderEQTLNQlLvEmDG 282 (596)
T COG0465 256 RQRGAGLGGGNDEREQTLNQLLVEMDG 282 (596)
T ss_pred cccCCCCCCCchHHHHHHHHHHhhhcc
Confidence 776433 45556677899999999985
No 70
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.60 E-value=2.1e-14 Score=150.25 Aligned_cols=190 Identities=26% Similarity=0.400 Sum_probs=124.8
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
++.++||+||||||||++|+++|+.++.+|+.+.++++... |+|.. ...+..+++.+ ....++||||||+|.+.
T Consensus 155 ~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~-~~g~~-~~~i~~~f~~a----~~~~p~il~iDEiD~l~ 228 (364)
T TIGR01242 155 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRK-YIGEG-ARLVREIFELA----KEKAPSIIFIDEIDAIA 228 (364)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHH-hhhHH-HHHHHHHHHHH----HhcCCcEEEhhhhhhhc
Confidence 56789999999999999999999999999999988877643 66664 44555665543 23467899999999997
Q ss_pred hhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCc
Q 038067 242 KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGF 321 (510)
Q Consensus 242 ~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf 321 (510)
..+...... ....++..|.+++..- .+ . -...++.||+|+|..+
T Consensus 229 ~~~~~~~~~--~~~~~~~~l~~ll~~l--------d~-~---------~~~~~v~vI~ttn~~~---------------- 272 (364)
T TIGR01242 229 AKRTDSGTS--GDREVQRTLMQLLAEL--------DG-F---------DPRGNVKVIAATNRPD---------------- 272 (364)
T ss_pred cccccCCCC--ccHHHHHHHHHHHHHh--------hC-C---------CCCCCEEEEEecCChh----------------
Confidence 544322111 1123566666665310 00 0 0124566777776211
Q ss_pred CcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhh--cccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHh
Q 038067 322 GAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFI--GRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFS 399 (510)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl--~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~ 399 (510)
.+.|+++ +||+.+|.|+.++.++..+|+....
T Consensus 273 ----------------------------------~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~------------ 306 (364)
T TIGR01242 273 ----------------------------------ILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHT------------ 306 (364)
T ss_pred ----------------------------------hCChhhcCcccCceEEEeCCcCHHHHHHHHHHHH------------
Confidence 1344554 5999999999999999999986421
Q ss_pred cCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHHhc
Q 038067 400 MNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFE 443 (510)
Q Consensus 400 ~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~~ 443 (510)
.+..+. .+--+..|++. ..++.++.|+.++......++.+
T Consensus 307 -~~~~l~-~~~~~~~la~~--t~g~sg~dl~~l~~~A~~~a~~~ 346 (364)
T TIGR01242 307 -RKMKLA-EDVDLEAIAKM--TEGASGADLKAICTEAGMFAIRE 346 (364)
T ss_pred -hcCCCC-ccCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHh
Confidence 111111 11125566664 34667889999988887777664
No 71
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=7.1e-15 Score=146.11 Aligned_cols=155 Identities=23% Similarity=0.316 Sum_probs=114.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhC---------CCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCc--EE
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVN---------VPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRG--IV 232 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~---------~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~--Vl 232 (510)
+-+||+||||||||+|||+||+.+. ..++.+++..+.. .|++++ ++.+..+|++....+.. .+. .+
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFS-KWFsES-gKlV~kmF~kI~ELv~d-~~~lVfv 254 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFS-KWFSES-GKLVAKMFQKIQELVED-RGNLVFV 254 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHH-HHHhhh-hhHHHHHHHHHHHHHhC-CCcEEEE
Confidence 5699999999999999999999993 2567888888773 588887 78888888876543332 333 57
Q ss_pred EEcchhhhhhhccCCCCC--CCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHH
Q 038067 233 YIDEVDKIVKAESRNNGR--DVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTI 310 (510)
Q Consensus 233 ~iDEidkl~~~~~~~~~~--~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i 310 (510)
+|||++.+..++.....+ .....+|.++||.-||. +-...|+++.+|+|..
T Consensus 255 LIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDr---------------------lK~~~NvliL~TSNl~------ 307 (423)
T KOG0744|consen 255 LIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDR---------------------LKRYPNVLILATSNLT------ 307 (423)
T ss_pred EeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHH---------------------hccCCCEEEEeccchH------
Confidence 799999999776433333 33445899999999982 1133566666666611
Q ss_pred HhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHH
Q 038067 311 SERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNAL 390 (510)
Q Consensus 311 ~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l 390 (510)
..+.-+|.+|-|++..+.+++.+.+.+|++..+..+
T Consensus 308 --------------------------------------------~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL 343 (423)
T KOG0744|consen 308 --------------------------------------------DSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEEL 343 (423)
T ss_pred --------------------------------------------HHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHHH
Confidence 014458999999999999999999999999766665
Q ss_pred HH
Q 038067 391 GR 392 (510)
Q Consensus 391 ~~ 392 (510)
+.
T Consensus 344 ~~ 345 (423)
T KOG0744|consen 344 IS 345 (423)
T ss_pred Hh
Confidence 53
No 72
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.59 E-value=1.3e-14 Score=170.18 Aligned_cols=189 Identities=20% Similarity=0.248 Sum_probs=122.3
Q ss_pred ccCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccc---cc------ccc------------------------
Q 038067 161 LEKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQA---GY------VGE------------------------ 207 (510)
Q Consensus 161 ~~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~---gy------~G~------------------------ 207 (510)
.+++++||+||||||||+|||++|..+++||+.++++++.+. || +|+
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n~ 1707 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMNA 1707 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcch
Confidence 478899999999999999999999999999999999998742 11 111
Q ss_pred -------chh-hHHHHHHHhhchhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCC
Q 038067 208 -------DAE-SVLYKLLAAADFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGP 279 (510)
Q Consensus 208 -------~~~-~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~ 279 (510)
++. ..++.+|+.| ++..||||||||||.+...++ .......|+..|+|.. +
T Consensus 1708 ~~~~m~~~e~~~rIr~lFelA----Rk~SPCIIFIDEIDaL~~~ds--------~~ltL~qLLneLDg~~--------~- 1766 (2281)
T CHL00206 1708 LTMDMMPKIDRFYITLQFELA----KAMSPCIIWIPNIHDLNVNES--------NYLSLGLLVNSLSRDC--------E- 1766 (2281)
T ss_pred hhhhhhhhhhHHHHHHHHHHH----HHCCCeEEEEEchhhcCCCcc--------ceehHHHHHHHhcccc--------c-
Confidence 111 1245555554 557899999999999975421 1124788888887411 0
Q ss_pred CCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCch
Q 038067 280 RKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIP 359 (510)
Q Consensus 280 ~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~P 359 (510)
. -.+.++++|+|+|.++ .+.|
T Consensus 1767 ~---------~s~~~VIVIAATNRPD--------------------------------------------------~LDP 1787 (2281)
T CHL00206 1767 R---------CSTRNILVIASTHIPQ--------------------------------------------------KVDP 1787 (2281)
T ss_pred c---------CCCCCEEEEEeCCCcc--------------------------------------------------cCCH
Confidence 0 1245677777777321 2677
Q ss_pred hhhc--ccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHH
Q 038067 360 EFIG--RFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENIL 437 (510)
Q Consensus 360 efl~--R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l 437 (510)
+|++ |||..|.++.++..+..+++.. +. ...+..+.-...-++.+|+. +.++.++.|.+++..++
T Consensus 1788 ALLRPGRFDR~I~Ir~Pd~p~R~kiL~I----Ll-------~tkg~~L~~~~vdl~~LA~~--T~GfSGADLanLvNEAa 1854 (2281)
T CHL00206 1788 ALIAPNKLNTCIKIRRLLIPQQRKHFFT----LS-------YTRGFHLEKKMFHTNGFGSI--TMGSNARDLVALTNEAL 1854 (2281)
T ss_pred hHcCCCCCCeEEEeCCCCchhHHHHHHH----HH-------hhcCCCCCcccccHHHHHHh--CCCCCHHHHHHHHHHHH
Confidence 7774 9999999998887776666542 10 11122221111124556653 35556677777776665
Q ss_pred HHHHh
Q 038067 438 TEAMF 442 (510)
Q Consensus 438 ~~~l~ 442 (510)
.-++.
T Consensus 1855 liAir 1859 (2281)
T CHL00206 1855 SISIT 1859 (2281)
T ss_pred HHHHH
Confidence 55554
No 73
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=2.3e-14 Score=154.05 Aligned_cols=165 Identities=25% Similarity=0.407 Sum_probs=110.1
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhCC------------------------CeEEEeccccccccccccchhhHHHHHHH
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVNV------------------------PFTITDATALTQAGYVGEDAESVLYKLLA 218 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~~------------------------p~~~~~~s~l~~~gy~G~~~~~~l~~l~~ 218 (510)
++++||+||||||||++|+++|+.++. .++.++++.- .| -..++.+..
T Consensus 36 ~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~~-----~g---id~iR~i~~ 107 (472)
T PRK14962 36 SHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAASN-----RG---IDEIRKIRD 107 (472)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCccc-----CC---HHHHHHHHH
Confidence 356899999999999999999999853 2333333211 11 122333333
Q ss_pred hhchhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceee
Q 038067 219 AADFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFI 298 (510)
Q Consensus 219 ~~~~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI 298 (510)
.....-..+...||+|||+|.+... .++.|++.++. ...+++||
T Consensus 108 ~~~~~p~~~~~kVvIIDE~h~Lt~~-------------a~~~LLk~LE~-----------------------p~~~vv~I 151 (472)
T PRK14962 108 AVGYRPMEGKYKVYIIDEVHMLTKE-------------AFNALLKTLEE-----------------------PPSHVVFV 151 (472)
T ss_pred HHhhChhcCCeEEEEEEChHHhHHH-------------HHHHHHHHHHh-----------------------CCCcEEEE
Confidence 3221112245679999999999754 68999999982 11234455
Q ss_pred cCCCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHH
Q 038067 299 CGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQ 378 (510)
Q Consensus 299 ~tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~ee 378 (510)
++++.. ..+.|.+.+|+. ++.|.+++.++
T Consensus 152 lattn~--------------------------------------------------~kl~~~L~SR~~-vv~f~~l~~~e 180 (472)
T PRK14962 152 LATTNL--------------------------------------------------EKVPPTIISRCQ-VIEFRNISDEL 180 (472)
T ss_pred EEeCCh--------------------------------------------------HhhhHHHhcCcE-EEEECCccHHH
Confidence 443310 025668889985 67999999999
Q ss_pred HHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHH
Q 038067 379 LVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILT 438 (510)
Q Consensus 379 l~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~ 438 (510)
+..++.... ... .+.++++++++|++.+ ++++|.+-+.++.++.
T Consensus 181 l~~~L~~i~-----------~~e--gi~i~~eal~~Ia~~s---~GdlR~aln~Le~l~~ 224 (472)
T PRK14962 181 IIKRLQEVA-----------EAE--GIEIDREALSFIAKRA---SGGLRDALTMLEQVWK 224 (472)
T ss_pred HHHHHHHHH-----------HHc--CCCCCHHHHHHHHHHh---CCCHHHHHHHHHHHHH
Confidence 988886421 112 3568999999999976 6788998888887553
No 74
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.58 E-value=5.4e-14 Score=157.00 Aligned_cols=147 Identities=27% Similarity=0.411 Sum_probs=109.7
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
.+.+++|+||||||||++|+++|+.++.||+.++++++.. .|+|.. ...++.++..+ ....++||||||||.+.
T Consensus 184 ~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~-~~~g~~-~~~~~~~f~~a----~~~~P~IifIDEiD~l~ 257 (644)
T PRK10733 184 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE-MFVGVG-ASRVRDMFEQA----KKAAPCIIFIDEIDAVG 257 (644)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHH-hhhccc-HHHHHHHHHHH----HhcCCcEEEehhHhhhh
Confidence 4567999999999999999999999999999999998875 377765 45666777654 44578999999999998
Q ss_pred hhccCC-CCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCC
Q 038067 242 KAESRN-NGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIG 320 (510)
Q Consensus 242 ~~~~~~-~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~g 320 (510)
..+... .+.....+.+.+.||..|||- ....++++|+|+|..+
T Consensus 258 ~~r~~~~~g~~~~~~~~ln~lL~~mdg~---------------------~~~~~vivIaaTN~p~--------------- 301 (644)
T PRK10733 258 RQRGAGLGGGHDEREQTLNQMLVEMDGF---------------------EGNEGIIVIAATNRPD--------------- 301 (644)
T ss_pred hccCCCCCCCchHHHHHHHHHHHhhhcc---------------------cCCCCeeEEEecCChh---------------
Confidence 655432 122223345778888888741 1224567777777321
Q ss_pred cCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhh--cccCceEecCCCCHHHHHHHHhc
Q 038067 321 FGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFI--GRFPILVSLSALNEDQLVQVLME 385 (510)
Q Consensus 321 f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl--~R~~~iv~f~~Ls~eel~~Il~~ 385 (510)
.+.|+++ +|||..|.|+.++.++..+|++.
T Consensus 302 -----------------------------------~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~ 333 (644)
T PRK10733 302 -----------------------------------VLDPALLRPGRFDRQVVVGLPDVRGREQILKV 333 (644)
T ss_pred -----------------------------------hcCHHHhCCcccceEEEcCCCCHHHHHHHHHH
Confidence 1455666 59999999999999999999875
No 75
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=2.2e-14 Score=158.22 Aligned_cols=163 Identities=24% Similarity=0.326 Sum_probs=112.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhCCC------------------------eEEEeccccccccccccchhhHHHHHHHh
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVNVP------------------------FTITDATALTQAGYVGEDAESVLYKLLAA 219 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~~p------------------------~~~~~~s~l~~~gy~G~~~~~~l~~l~~~ 219 (510)
+.+||+||+|||||++|+.||+.++.. ++.+|..+ ... -..++.+++.
T Consensus 39 HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas-------~rg-VDdIReLIe~ 110 (830)
T PRK07003 39 HAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAAS-------NRG-VDEMAALLER 110 (830)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecccc-------ccc-HHHHHHHHHH
Confidence 457999999999999999999998531 12222211 011 1224445444
Q ss_pred hchhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeec
Q 038067 220 ADFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFIC 299 (510)
Q Consensus 220 ~~~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~ 299 (510)
..+........|+||||+|.|... .++.||+.||. ...++.||+
T Consensus 111 a~~~P~~gr~KVIIIDEah~LT~~-------------A~NALLKtLEE-----------------------PP~~v~FIL 154 (830)
T PRK07003 111 AVYAPVDARFKVYMIDEVHMLTNH-------------AFNAMLKTLEE-----------------------PPPHVKFIL 154 (830)
T ss_pred HHhccccCCceEEEEeChhhCCHH-------------HHHHHHHHHHh-----------------------cCCCeEEEE
Confidence 322222345679999999999764 69999999983 234667777
Q ss_pred CCCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHH
Q 038067 300 GGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQL 379 (510)
Q Consensus 300 tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel 379 (510)
+++.. ..+.+.+++|+.. +.|.+++.+++
T Consensus 155 aTtd~--------------------------------------------------~KIp~TIrSRCq~-f~Fk~Ls~eeI 183 (830)
T PRK07003 155 ATTDP--------------------------------------------------QKIPVTVLSRCLQ-FNLKQMPAGHI 183 (830)
T ss_pred EECCh--------------------------------------------------hhccchhhhheEE-EecCCcCHHHH
Confidence 76611 1266789999954 69999999999
Q ss_pred HHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHH
Q 038067 380 VQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENIL 437 (510)
Q Consensus 380 ~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l 437 (510)
.+++++ +. ..+ .+.+++++++.|++.+ .++.|...++++..+
T Consensus 184 v~~L~~----Il-------~~E--gI~id~eAL~lIA~~A---~GsmRdALsLLdQAi 225 (830)
T PRK07003 184 VSHLER----IL-------GEE--RIAFEPQALRLLARAA---QGSMRDALSLTDQAI 225 (830)
T ss_pred HHHHHH----HH-------HHc--CCCCCHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 888864 11 122 4568999999999986 666788888777655
No 76
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.58 E-value=1.3e-14 Score=128.14 Aligned_cols=94 Identities=30% Similarity=0.569 Sum_probs=73.0
Q ss_pred EEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhc-CcEEEEcchhhhhhhc
Q 038067 166 VLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQ-RGIVYIDEVDKIVKAE 244 (510)
Q Consensus 166 vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~-~~Vl~iDEidkl~~~~ 244 (510)
+||+||||||||++|+.+|+.++.+++.+++.++.. .+.+.. ...+...+.++ .... ++||||||+|++....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~-~~~~~~-~~~i~~~~~~~----~~~~~~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELIS-SYAGDS-EQKIRDFFKKA----KKSAKPCVLFIDEIDKLFPKS 74 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHT-SSTTHH-HHHHHHHHHHH----HHTSTSEEEEEETGGGTSHHC
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccccccccccc-cccccc-ccccccccccc----cccccceeeeeccchhccccc
Confidence 699999999999999999999999999999999873 354544 55666666664 2333 7999999999998765
Q ss_pred cCCCCCCCchhhHHHHHHHHhhC
Q 038067 245 SRNNGRDVSGEGVQQALLKMLEG 267 (510)
Q Consensus 245 ~~~~~~~~~~~~v~~~LL~~leg 267 (510)
+.........+++.|+..++.
T Consensus 75 --~~~~~~~~~~~~~~L~~~l~~ 95 (132)
T PF00004_consen 75 --QPSSSSFEQRLLNQLLSLLDN 95 (132)
T ss_dssp --STSSSHHHHHHHHHHHHHHHT
T ss_pred --ccccccccccccceeeecccc
Confidence 222333344688999999983
No 77
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=5.9e-15 Score=154.33 Aligned_cols=166 Identities=19% Similarity=0.298 Sum_probs=102.2
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhC----CCeEEE------eccc-----cc-cccc--cccchhhHHHHHH----Hh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVN----VPFTIT------DATA-----LT-QAGY--VGEDAESVLYKLL----AA 219 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~----~p~~~~------~~s~-----l~-~~gy--~G~~~~~~l~~l~----~~ 219 (510)
..+|+||+||||||||++|+.+...|- ...+++ +... +. ..-| .+++ .....++ ..
T Consensus 197 GgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~~~~~~~~~~rPFr~PHHs--aS~~aLvGGG~~p 274 (490)
T COG0606 197 GGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHEGCPLKIHRPFRAPHHS--ASLAALVGGGGVP 274 (490)
T ss_pred cCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhcccccccCccceeCCccCCCcc--chHHHHhCCCCCC
Confidence 557999999999999999999987761 000000 0000 00 0000 0111 0011111 12
Q ss_pred hchhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeec
Q 038067 220 ADFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFIC 299 (510)
Q Consensus 220 ~~~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~ 299 (510)
.++.+..+++|||||||+-.+... +++.|.+.||.+.+.|. +.+ .-+...+++.+|+
T Consensus 275 ~PGeIsLAH~GVLFLDElpef~~~-------------iLe~LR~PLE~g~i~Is--Ra~--------~~v~ypa~Fqlv~ 331 (490)
T COG0606 275 RPGEISLAHNGVLFLDELPEFKRS-------------ILEALREPLENGKIIIS--RAG--------SKVTYPARFQLVA 331 (490)
T ss_pred CCCceeeecCCEEEeeccchhhHH-------------HHHHHhCccccCcEEEE--EcC--------CeeEEeeeeEEhh
Confidence 345667889999999999987654 99999999998888776 333 2355666777777
Q ss_pred CCCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHH
Q 038067 300 GGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQL 379 (510)
Q Consensus 300 tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel 379 (510)
+.| .+.+|+.......+.. ........++ .+.-+|++|||..+..+.++..++
T Consensus 332 AmN-------------pcpcG~~~~~~~~C~c----~~~~~~~Y~~----------klSgp~lDRiDl~vev~~~~~~e~ 384 (490)
T COG0606 332 AMN-------------PCPCGNLGAPLRRCPC----SPRQIKRYLN----------KLSGPFLDRIDLMVEVPRLSAGEL 384 (490)
T ss_pred hcC-------------CCCccCCCCCCCCcCC----CHHHHHHHHH----------HhhHHHHhhhhheecccCCCHHHh
Confidence 766 5677765554333211 1122222333 256699999999999999985444
No 78
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=3.4e-14 Score=155.22 Aligned_cols=165 Identities=24% Similarity=0.272 Sum_probs=112.9
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhCC------------------------CeEEEeccccccccccccchhhHHHHHHH
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVNV------------------------PFTITDATALTQAGYVGEDAESVLYKLLA 218 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~~------------------------p~~~~~~s~l~~~gy~G~~~~~~l~~l~~ 218 (510)
++.+||+||+|||||++|+++|+.++. .++.+|+++-. . -..+++++.
T Consensus 37 ~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs~~-------~-VddIReli~ 108 (702)
T PRK14960 37 HHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRT-------K-VEDTRELLD 108 (702)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEecccccC-------C-HHHHHHHHH
Confidence 357899999999999999999999853 22233322110 1 223455554
Q ss_pred hhchhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceee
Q 038067 219 AADFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFI 298 (510)
Q Consensus 219 ~~~~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI 298 (510)
...+.-......|++|||+|.|... .++.|++.||. ...++.||
T Consensus 109 ~~~y~P~~gk~KV~IIDEVh~LS~~-------------A~NALLKtLEE-----------------------PP~~v~FI 152 (702)
T PRK14960 109 NVPYAPTQGRFKVYLIDEVHMLSTH-------------SFNALLKTLEE-----------------------PPEHVKFL 152 (702)
T ss_pred HHhhhhhcCCcEEEEEechHhcCHH-------------HHHHHHHHHhc-----------------------CCCCcEEE
Confidence 4433223345679999999998765 58999999983 11334566
Q ss_pred cCCCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHH
Q 038067 299 CGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQ 378 (510)
Q Consensus 299 ~tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~ee 378 (510)
++++.. ..+.+.+++|+.. +.|.+++.++
T Consensus 153 LaTtd~--------------------------------------------------~kIp~TIlSRCq~-feFkpLs~eE 181 (702)
T PRK14960 153 FATTDP--------------------------------------------------QKLPITVISRCLQ-FTLRPLAVDE 181 (702)
T ss_pred EEECCh--------------------------------------------------HhhhHHHHHhhhe-eeccCCCHHH
Confidence 655410 1245678889954 5999999999
Q ss_pred HHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHH
Q 038067 379 LVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILT 438 (510)
Q Consensus 379 l~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~ 438 (510)
+.+.+... . ..+ .+.++++++..|++.+ +++.|.+.+.++.++.
T Consensus 182 I~k~L~~I----l-------~kE--gI~id~eAL~~IA~~S---~GdLRdALnLLDQaIa 225 (702)
T PRK14960 182 ITKHLGAI----L-------EKE--QIAADQDAIWQIAESA---QGSLRDALSLTDQAIA 225 (702)
T ss_pred HHHHHHHH----H-------HHc--CCCCCHHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 98888642 1 222 4568999999999986 6678988888877653
No 79
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=2.7e-14 Score=144.77 Aligned_cols=193 Identities=21% Similarity=0.333 Sum_probs=133.5
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
++.++||+||||||||++|+++|+..+.+|+.++++.+++ .|+|+. .+.+..+|.-+ .+-.++||||||+|.+.
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~-KWfgE~-eKlv~AvFslA----sKl~P~iIFIDEvds~L 199 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTS-KWFGEA-QKLVKAVFSLA----SKLQPSIIFIDEVDSFL 199 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccch-hhHHHH-HHHHHHHHhhh----hhcCcceeehhhHHHHH
Confidence 7789999999999999999999999999999999999997 588886 66666666554 35688999999999999
Q ss_pred hhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCc
Q 038067 242 KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGF 321 (510)
Q Consensus 242 ~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf 321 (510)
..+ ....|+. -....+.|....||- .++.... ++++.++|
T Consensus 200 ~~R-~s~dHEa-~a~mK~eFM~~WDGl-----------~s~~~~r--------VlVlgATN------------------- 239 (386)
T KOG0737|consen 200 GQR-RSTDHEA-TAMMKNEFMALWDGL-----------SSKDSER--------VLVLGATN------------------- 239 (386)
T ss_pred hhc-ccchHHH-HHHHHHHHHHHhccc-----------cCCCCce--------EEEEeCCC-------------------
Confidence 665 2222322 224677788888752 2222222 33333333
Q ss_pred CcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHhcC
Q 038067 322 GAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFSMN 401 (510)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~~~ 401 (510)
+|.| +..++++|++..+.+.-++.+...+|++-.+ ...
T Consensus 240 --------------------------RP~D-----lDeAiiRR~p~rf~V~lP~~~qR~kILkviL-----------k~e 277 (386)
T KOG0737|consen 240 --------------------------RPFD-----LDEAIIRRLPRRFHVGLPDAEQRRKILKVIL-----------KKE 277 (386)
T ss_pred --------------------------CCcc-----HHHHHHHhCcceeeeCCCchhhHHHHHHHHh-----------ccc
Confidence 1222 4557889999999999999999999997411 222
Q ss_pred CceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHHhcCcCC
Q 038067 402 NVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPET 447 (510)
Q Consensus 402 ~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~~~~~~ 447 (510)
++.-.+ -+..++.. ..++..+.|+.+.......++.++-..
T Consensus 278 ~~e~~v---D~~~iA~~--t~GySGSDLkelC~~Aa~~~ire~~~~ 318 (386)
T KOG0737|consen 278 KLEDDV---DLDEIAQM--TEGYSGSDLKELCRLAALRPIRELLVS 318 (386)
T ss_pred ccCccc---CHHHHHHh--cCCCcHHHHHHHHHHHhHhHHHHHHHh
Confidence 332222 34455553 456667888888777666666665544
No 80
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.56 E-value=8.5e-14 Score=148.04 Aligned_cols=167 Identities=29% Similarity=0.415 Sum_probs=116.5
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhhh
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIVK 242 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~~ 242 (510)
..+++|+||||||||++|+++|+.++.+|+.+++.... ...++.++...........+.||||||++++..
T Consensus 36 ~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~---------~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~ 106 (413)
T PRK13342 36 LSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSG---------VKDLREVIEEARQRRSAGRRTILFIDEIHRFNK 106 (413)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccc---------HHHHHHHHHHHHHhhhcCCceEEEEechhhhCH
Confidence 35899999999999999999999999999999876431 122333333322111223568999999999876
Q ss_pred hccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCcC
Q 038067 243 AESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGFG 322 (510)
Q Consensus 243 ~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf~ 322 (510)
. .++.|+..++.+. +++|.+++..
T Consensus 107 ~-------------~q~~LL~~le~~~-------------------------iilI~att~n------------------ 130 (413)
T PRK13342 107 A-------------QQDALLPHVEDGT-------------------------ITLIGATTEN------------------ 130 (413)
T ss_pred H-------------HHHHHHHHhhcCc-------------------------EEEEEeCCCC------------------
Confidence 5 5899999997321 2233222200
Q ss_pred cccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHhcCC
Q 038067 323 APVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFSMNN 402 (510)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~~~~ 402 (510)
+ ...+.|.+++|+ .++.|.+++.+++..++...+ ... . .+
T Consensus 131 --------------------------~----~~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l----~~~----~-~~ 170 (413)
T PRK13342 131 --------------------------P----SFEVNPALLSRA-QVFELKPLSEEDIEQLLKRAL----EDK----E-RG 170 (413)
T ss_pred --------------------------h----hhhccHHHhccc-eeeEeCCCCHHHHHHHHHHHH----HHh----h-cC
Confidence 0 012678899999 567999999999999987522 111 1 13
Q ss_pred ceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHH
Q 038067 403 VKLHFTDDALRLIAKKAMAKNTGARGLRALLENILT 438 (510)
Q Consensus 403 ~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~ 438 (510)
. +.+++++++.|++.+ .++.|.+.++++..+.
T Consensus 171 ~-i~i~~~al~~l~~~s---~Gd~R~aln~Le~~~~ 202 (413)
T PRK13342 171 L-VELDDEALDALARLA---NGDARRALNLLELAAL 202 (413)
T ss_pred C-CCCCHHHHHHHHHhC---CCCHHHHHHHHHHHHH
Confidence 2 478999999999975 6678999999988653
No 81
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.56 E-value=6.8e-14 Score=151.19 Aligned_cols=235 Identities=16% Similarity=0.220 Sum_probs=130.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCC--CeEEEecccccc-cc------------cc--ccc--hhhHHHHHHHhhch
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNV--PFTITDATALTQ-AG------------YV--GED--AESVLYKLLAAADF 222 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~--p~~~~~~s~l~~-~g------------y~--G~~--~~~~l~~l~~~~~~ 222 (510)
...+++|+||||||||++++.++..+.. .-..++.+.+.. .| |. .+. ....+.......++
T Consensus 210 ~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG 289 (499)
T TIGR00368 210 GGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPG 289 (499)
T ss_pred CCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhccccccccCCccccccccchhhhhCCccccchh
Confidence 4578999999999999999999986611 111222222110 00 00 000 00000000011234
Q ss_pred hHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCC
Q 038067 223 DVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGA 302 (510)
Q Consensus 223 ~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~ 302 (510)
.+..+++|||||||++++.+. +|+.|+++||.+.++|. ..|... ....++.+|+++|
T Consensus 290 ~i~lA~~GvLfLDEi~e~~~~-------------~~~~L~~~LE~~~v~i~--r~g~~~--------~~pa~frlIaa~N 346 (499)
T TIGR00368 290 EISLAHNGVLFLDELPEFKRS-------------VLDALREPIEDGSISIS--RASAKI--------FYPARFQLVAAMN 346 (499)
T ss_pred hhhccCCCeEecCChhhCCHH-------------HHHHHHHHHHcCcEEEE--ecCcce--------eccCCeEEEEecC
Confidence 567788999999999998765 89999999998777665 333322 2334566666665
Q ss_pred ccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHH
Q 038067 303 FVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQV 382 (510)
Q Consensus 303 ~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~I 382 (510)
.+.+||-......+.. ......+++ ..+.++|++|||..+.+++++.+++.+-
T Consensus 347 -------------pcpcg~~~~~~~~c~c----~~~~~~~y~----------~~is~pllDR~dl~~~~~~~~~~~l~~~ 399 (499)
T TIGR00368 347 -------------PCPCGHYGGKNTHCRC----SPQQISRYW----------NKLSGPFLDRIDLSVEVPLLPPEKLLST 399 (499)
T ss_pred -------------CcccCcCCCCcccccC----CHHHHHHHh----------hhccHhHHhhCCEEEEEcCCCHHHHhcc
Confidence 3455654322221211 111111222 2378899999999999999877765320
Q ss_pred --------HhchhHHHHHHHHHHHhcC---Cce-----------eeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHH
Q 038067 383 --------LMEPKNALGRQYKKMFSMN---NVK-----------LHFTDDALRLIAKKAMAKNTGARGLRALLENILTEA 440 (510)
Q Consensus 383 --------l~~~~~~l~~~~~~~~~~~---~~~-----------l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~ 440 (510)
+++....--....+++... ..+ ..+++++.+.+.+..-..+.++|...+++. +...
T Consensus 400 ~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~rilr--vArT 477 (499)
T TIGR00368 400 GSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATHRILK--VART 477 (499)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchHHHHHHH--HHHH
Confidence 1111101101112222211 011 235677777766654455678999999998 5556
Q ss_pred HhcCcCCC
Q 038067 441 MFEIPETK 448 (510)
Q Consensus 441 l~~~~~~~ 448 (510)
+.++.+.+
T Consensus 478 iAdL~g~~ 485 (499)
T TIGR00368 478 IADLKEEK 485 (499)
T ss_pred HHhhcCCC
Confidence 66666554
No 82
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=6.6e-14 Score=156.98 Aligned_cols=171 Identities=24% Similarity=0.311 Sum_probs=110.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhCCC-------eEEEe-cccccccc------cccc--chhhHHHHHHHhhchhHHHh
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVNVP-------FTITD-ATALTQAG------YVGE--DAESVLYKLLAAADFDVEAA 227 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~~p-------~~~~~-~s~l~~~g------y~G~--~~~~~l~~l~~~~~~~~~~~ 227 (510)
+.+||+||+|||||++|+++|+.++.. +..++ |-.+.... +-+. ..-..++.+.....+.-..+
T Consensus 39 HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~g 118 (944)
T PRK14949 39 HAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRG 118 (944)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcC
Confidence 446999999999999999999999542 11110 10111000 0000 01123444444332222234
Q ss_pred cCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchH
Q 038067 228 QRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLE 307 (510)
Q Consensus 228 ~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~ 307 (510)
...|+||||+|+|... .++.||+.||. ...++.||++++..
T Consensus 119 k~KViIIDEAh~LT~e-------------AqNALLKtLEE-----------------------PP~~vrFILaTTe~--- 159 (944)
T PRK14949 119 RFKVYLIDEVHMLSRS-------------SFNALLKTLEE-----------------------PPEHVKFLLATTDP--- 159 (944)
T ss_pred CcEEEEEechHhcCHH-------------HHHHHHHHHhc-----------------------cCCCeEEEEECCCc---
Confidence 5679999999999765 79999999983 12344555554410
Q ss_pred HHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchh
Q 038067 308 KTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPK 387 (510)
Q Consensus 308 ~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~ 387 (510)
..+.|.+++|+ .++.|.+|+.+++...++..+
T Consensus 160 -----------------------------------------------~kLl~TIlSRC-q~f~fkpLs~eEI~~~L~~il 191 (944)
T PRK14949 160 -----------------------------------------------QKLPVTVLSRC-LQFNLKSLTQDEIGTQLNHIL 191 (944)
T ss_pred -----------------------------------------------hhchHHHHHhh-eEEeCCCCCHHHHHHHHHHHH
Confidence 12567889998 456999999999988886421
Q ss_pred HHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHH
Q 038067 388 NALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENIL 437 (510)
Q Consensus 388 ~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l 437 (510)
... .+.+++++++.|++.+ +++.|...++++..+
T Consensus 192 -----------~~E--gI~~edeAL~lIA~~S---~Gd~R~ALnLLdQal 225 (944)
T PRK14949 192 -----------TQE--QLPFEAEALTLLAKAA---NGSMRDALSLTDQAI 225 (944)
T ss_pred -----------HHc--CCCCCHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 112 4678999999999986 667898888887655
No 83
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=4.4e-14 Score=154.02 Aligned_cols=170 Identities=24% Similarity=0.308 Sum_probs=110.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhCC------------CeEEE-ecccccc---ccccc------cchhhHHHHHHHhhc
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVNV------------PFTIT-DATALTQ---AGYVG------EDAESVLYKLLAAAD 221 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~~------------p~~~~-~~s~l~~---~gy~G------~~~~~~l~~l~~~~~ 221 (510)
+.+||+||+|||||++|+.+|+.++. |.-.+ +|..+.. ..++. .. -..++++++...
T Consensus 39 HA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAas~~g-VDdIReLie~~~ 117 (700)
T PRK12323 39 HAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAASNRG-VDEMAQLLDKAV 117 (700)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcceEecccccCC-HHHHHHHHHHHH
Confidence 45799999999999999999999954 11000 0111100 00100 01 123444444432
Q ss_pred hhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCC
Q 038067 222 FDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGG 301 (510)
Q Consensus 222 ~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg 301 (510)
+.-......|++|||+|.|... .++.||+.||. ...+++||+++
T Consensus 118 ~~P~~gr~KViIIDEah~Ls~~-------------AaNALLKTLEE-----------------------PP~~v~FILaT 161 (700)
T PRK12323 118 YAPTAGRFKVYMIDEVHMLTNH-------------AFNAMLKTLEE-----------------------PPEHVKFILAT 161 (700)
T ss_pred hchhcCCceEEEEEChHhcCHH-------------HHHHHHHhhcc-----------------------CCCCceEEEEe
Confidence 2222345679999999999765 69999999983 12456777776
Q ss_pred CccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHH
Q 038067 302 AFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQ 381 (510)
Q Consensus 302 ~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~ 381 (510)
+.. ..+.|.+++|+.. +.|.+++.+++.+
T Consensus 162 tep--------------------------------------------------~kLlpTIrSRCq~-f~f~~ls~eei~~ 190 (700)
T PRK12323 162 TDP--------------------------------------------------QKIPVTVLSRCLQ-FNLKQMPPGHIVS 190 (700)
T ss_pred CCh--------------------------------------------------HhhhhHHHHHHHh-cccCCCChHHHHH
Confidence 611 1256789999955 5999999999888
Q ss_pred HHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHH
Q 038067 382 VLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENIL 437 (510)
Q Consensus 382 Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l 437 (510)
.+.+.+ ..+ .+.+++++++.|++.+ +++.|...++++..+
T Consensus 191 ~L~~Il-----------~~E--gi~~d~eAL~~IA~~A---~Gs~RdALsLLdQai 230 (700)
T PRK12323 191 HLDAIL-----------GEE--GIAHEVNALRLLAQAA---QGSMRDALSLTDQAI 230 (700)
T ss_pred HHHHHH-----------HHc--CCCCCHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 876421 112 3557899999999886 666788887777544
No 84
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=6.6e-15 Score=144.46 Aligned_cols=97 Identities=32% Similarity=0.513 Sum_probs=81.1
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
+|..++|||+||||||.||+++|+.....|+++-.+++.+. |.|.. ...++.+|+.+ ....++|+||||||.+.
T Consensus 218 pPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQk-ylGdG-pklvRqlF~vA----~e~apSIvFiDEIdAiG 291 (440)
T KOG0726|consen 218 PPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQK-YLGDG-PKLVRELFRVA----EEHAPSIVFIDEIDAIG 291 (440)
T ss_pred CCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHH-Hhccc-hHHHHHHHHHH----HhcCCceEEeehhhhhc
Confidence 88999999999999999999999999999999999999975 99987 67889999876 45788999999999998
Q ss_pred hhccCCCCCCCchhhHHHHHHHHhh
Q 038067 242 KAESRNNGRDVSGEGVQQALLKMLE 266 (510)
Q Consensus 242 ~~~~~~~~~~~~~~~v~~~LL~~le 266 (510)
..+-+.. .-+.+++|..+|.+|.
T Consensus 292 tKRyds~--SggerEiQrtmLELLN 314 (440)
T KOG0726|consen 292 TKRYDSN--SGGEREIQRTMLELLN 314 (440)
T ss_pred cccccCC--CccHHHHHHHHHHHHH
Confidence 5442211 1122369999999986
No 85
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.55 E-value=3.4e-13 Score=134.97 Aligned_cols=158 Identities=19% Similarity=0.237 Sum_probs=102.4
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEecccccc-cc----ccccchhhHHHHHHH--------------hhch
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQ-AG----YVGEDAESVLYKLLA--------------AADF 222 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~-~g----y~G~~~~~~l~~l~~--------------~~~~ 222 (510)
...++||+||||||||++|+++|+.++.|++.++|+.-.. .. |.+......+..... ..+.
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 99 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRL 99 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchH
Confidence 4468999999999999999999999999999998875332 11 222211111111100 1111
Q ss_pred hHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCC
Q 038067 223 DVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGA 302 (510)
Q Consensus 223 ~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~ 302 (510)
......+++|+||||+++.+. +|+.|+.+|+.+.+++| +.+.. ..++....++.+|+|+|
T Consensus 100 ~~A~~~g~~lllDEi~r~~~~-------------~q~~Ll~~Le~~~~~i~--~~~~~-----~~~i~~~~~frvIaTsN 159 (262)
T TIGR02640 100 TLAVREGFTLVYDEFTRSKPE-------------TNNVLLSVFEEGVLELP--GKRGT-----SRYVDVHPEFRVIFTSN 159 (262)
T ss_pred HHHHHcCCEEEEcchhhCCHH-------------HHHHHHHHhcCCeEEcc--CCCCC-----CceEecCCCCEEEEeeC
Confidence 112356789999999997765 89999999998888776 32211 11222345666777776
Q ss_pred ccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHH
Q 038067 303 FVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQV 382 (510)
Q Consensus 303 ~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~I 382 (510)
... | .. .+.+.++|++|| ..+.+..++.++..+|
T Consensus 160 ~~~---------------~-----------------------------~g-~~~l~~aL~~R~-~~i~i~~P~~~~e~~I 193 (262)
T TIGR02640 160 PVE---------------Y-----------------------------AG-VHETQDALLDRL-ITIFMDYPDIDTETAI 193 (262)
T ss_pred Ccc---------------c-----------------------------cc-eecccHHHHhhc-EEEECCCCCHHHHHHH
Confidence 210 0 00 011466899998 4568888999999999
Q ss_pred Hhc
Q 038067 383 LME 385 (510)
Q Consensus 383 l~~ 385 (510)
+..
T Consensus 194 l~~ 196 (262)
T TIGR02640 194 LRA 196 (262)
T ss_pred HHH
Confidence 875
No 86
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=7.3e-14 Score=151.62 Aligned_cols=164 Identities=26% Similarity=0.302 Sum_probs=111.5
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhCCC------------------------eEEEeccccccccccccchhhHHHHHHH
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVNVP------------------------FTITDATALTQAGYVGEDAESVLYKLLA 218 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~~p------------------------~~~~~~s~l~~~gy~G~~~~~~l~~l~~ 218 (510)
++.+||+||+|||||++|+.+|+.++.. ++.+|++.- .+ -..+++++.
T Consensus 38 ~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas~-----~~---v~~iR~l~~ 109 (509)
T PRK14958 38 HHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAASR-----TK---VEDTRELLD 109 (509)
T ss_pred CeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEccccc-----CC---HHHHHHHHH
Confidence 3458999999999999999999999531 233332211 11 122455554
Q ss_pred hhchhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceee
Q 038067 219 AADFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFI 298 (510)
Q Consensus 219 ~~~~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI 298 (510)
...+.-..+...|++|||+|.|... .+++||+.||. ...++.||
T Consensus 110 ~~~~~p~~~~~kV~iIDE~~~ls~~-------------a~naLLk~LEe-----------------------pp~~~~fI 153 (509)
T PRK14958 110 NIPYAPTKGRFKVYLIDEVHMLSGH-------------SFNALLKTLEE-----------------------PPSHVKFI 153 (509)
T ss_pred HHhhccccCCcEEEEEEChHhcCHH-------------HHHHHHHHHhc-----------------------cCCCeEEE
Confidence 4333223345679999999999865 69999999983 12345566
Q ss_pred cCCCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHH
Q 038067 299 CGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQ 378 (510)
Q Consensus 299 ~tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~ee 378 (510)
++++.. ..+.+.+++|+.. +.|.+++.++
T Consensus 154 lattd~--------------------------------------------------~kl~~tI~SRc~~-~~f~~l~~~~ 182 (509)
T PRK14958 154 LATTDH--------------------------------------------------HKLPVTVLSRCLQ-FHLAQLPPLQ 182 (509)
T ss_pred EEECCh--------------------------------------------------HhchHHHHHHhhh-hhcCCCCHHH
Confidence 654410 1245578899954 5999999998
Q ss_pred HHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHH
Q 038067 379 LVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENIL 437 (510)
Q Consensus 379 l~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l 437 (510)
+.+.+.. + +...+ +.+++++++.|++.+ +++.|.+.+.++..+
T Consensus 183 i~~~l~~----i-------l~~eg--i~~~~~al~~ia~~s---~GslR~al~lLdq~i 225 (509)
T PRK14958 183 IAAHCQH----L-------LKEEN--VEFENAALDLLARAA---NGSVRDALSLLDQSI 225 (509)
T ss_pred HHHHHHH----H-------HHHcC--CCCCHHHHHHHHHHc---CCcHHHHHHHHHHHH
Confidence 8877653 1 12234 557999999999986 567899999888765
No 87
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.53 E-value=8.3e-14 Score=149.20 Aligned_cols=200 Identities=21% Similarity=0.359 Sum_probs=133.0
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccccc----cccccchhhHHHHHHHhhchhHHHhcCcEEEE
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALTQA----GYVGEDAESVLYKLLAAADFDVEAAQRGIVYI 234 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~~~----gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~i 234 (510)
...+++++|++||||+++|++++... +.||+.++|..+.+. ..+|+. .+.+........+.+..+.+|+|||
T Consensus 161 ~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~-~~~~~~~~~~~~g~~~~a~~gtl~l 239 (445)
T TIGR02915 161 SDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYE-KGAFTGAVKQTLGKIEYAHGGTLFL 239 (445)
T ss_pred CCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCC-CCCcCCCccCCCCceeECCCCEEEE
Confidence 45689999999999999999999887 469999999987532 122221 1111111111223345578899999
Q ss_pred cchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhc
Q 038067 235 DEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERR 314 (510)
Q Consensus 235 DEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~ 314 (510)
|||+.|+.. +|..|+++++.+.+. ..|+... ...++.+|++++. ++++.+.
T Consensus 240 ~~i~~l~~~-------------~q~~l~~~l~~~~~~----~~~~~~~--------~~~~~rii~~~~~-~l~~~~~--- 290 (445)
T TIGR02915 240 DEIGDLPLN-------------LQAKLLRFLQERVIE----RLGGREE--------IPVDVRIVCATNQ-DLKRMIA--- 290 (445)
T ss_pred echhhCCHH-------------HHHHHHHHHhhCeEE----eCCCCce--------eeeceEEEEecCC-CHHHHHH---
Confidence 999999876 899999999865443 1222111 1245666666652 2222221
Q ss_pred ccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCc-eEecCCCCH--HHHHHHHhchhHHHH
Q 038067 315 QDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPI-LVSLSALNE--DQLVQVLMEPKNALG 391 (510)
Q Consensus 315 ~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~-iv~f~~Ls~--eel~~Il~~~~~~l~ 391 (510)
+..|+++|..|+.. .|.++||.+ +|+..++.. ++
T Consensus 291 ---------------------------------------~~~~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~----~l 327 (445)
T TIGR02915 291 ---------------------------------------EGTFREDLFYRIAEISITIPPLRSRDGDAVLLANA----FL 327 (445)
T ss_pred ---------------------------------------cCCccHHHHHHhccceecCCCchhchhhHHHHHHH----HH
Confidence 13488889899875 588899875 677777664 33
Q ss_pred HHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHH
Q 038067 392 RQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILT 438 (510)
Q Consensus 392 ~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~ 438 (510)
+++.... ......+++++++.|.. |.|.++.|+|+++|++.+.
T Consensus 328 ~~~~~~~--~~~~~~~~~~a~~~L~~--~~wpgNvreL~~~i~~a~~ 370 (445)
T TIGR02915 328 ERFAREL--KRKTKGFTDDALRALEA--HAWPGNVRELENKVKRAVI 370 (445)
T ss_pred HHHHHHh--CCCCCCCCHHHHHHHHh--CCCCChHHHHHHHHHHHHH
Confidence 3343321 12235689999999998 5667789999999999885
No 88
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.53 E-value=8.3e-15 Score=136.91 Aligned_cols=122 Identities=26% Similarity=0.398 Sum_probs=77.5
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccccc----cccccchhhHHHHHHHhhchhHHHhcCcEEEE
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALTQA----GYVGEDAESVLYKLLAAADFDVEAAQRGIVYI 234 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~~~----gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~i 234 (510)
.+.+|||+|++||||+.+|++|++.. +.||+.+||+.+.+. ..+|+.. +.+........+.+..+.+|+|||
T Consensus 21 ~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~-~~~~~~~~~~~G~l~~A~~GtL~L 99 (168)
T PF00158_consen 21 SDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEK-GAFTGARSDKKGLLEQANGGTLFL 99 (168)
T ss_dssp STS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCS-SSSTTTSSEBEHHHHHTTTSEEEE
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhcccc-ccccccccccCCceeeccceEEee
Confidence 55789999999999999999999977 469999999987532 1222211 000000011234567789999999
Q ss_pred cchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHH
Q 038067 235 DEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTI 310 (510)
Q Consensus 235 DEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i 310 (510)
|||+.|+.. +|..|+++|+.+.++ ..|... --..++.+|++++ .+|++.+
T Consensus 100 d~I~~L~~~-------------~Q~~Ll~~l~~~~~~----~~g~~~--------~~~~~~RiI~st~-~~l~~~v 149 (168)
T PF00158_consen 100 DEIEDLPPE-------------LQAKLLRVLEEGKFT----RLGSDK--------PVPVDVRIIASTS-KDLEELV 149 (168)
T ss_dssp ETGGGS-HH-------------HHHHHHHHHHHSEEE----CCTSSS--------EEE--EEEEEEES-S-HHHHH
T ss_pred cchhhhHHH-------------HHHHHHHHHhhchhc----cccccc--------cccccceEEeecC-cCHHHHH
Confidence 999999887 899999999965554 222211 1335777777766 2444443
No 89
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=9.9e-14 Score=141.45 Aligned_cols=194 Identities=22% Similarity=0.359 Sum_probs=130.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
+=+|||||||||||||+.|+.||+..|..+..+...++...| ...-..+..+| ++.-....+-+|||||.|.+.
T Consensus 383 pfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG---~qaVTkiH~lF---DWakkS~rGLllFIDEADAFL 456 (630)
T KOG0742|consen 383 PFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLG---AQAVTKIHKLF---DWAKKSRRGLLLFIDEADAFL 456 (630)
T ss_pred hhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccc---hHHHHHHHHHH---HHHhhcccceEEEehhhHHHH
Confidence 458999999999999999999999999999999999988654 22222333443 333334566799999999999
Q ss_pred hhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCc
Q 038067 242 KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGF 321 (510)
Q Consensus 242 ~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf 321 (510)
..++.+++++ .|..-|.+|- + +.| +.. ..+++++++|-.
T Consensus 457 ceRnktymSE-----aqRsaLNAlL---f-----RTG----dqS-------rdivLvlAtNrp----------------- 495 (630)
T KOG0742|consen 457 CERNKTYMSE-----AQRSALNALL---F-----RTG----DQS-------RDIVLVLATNRP----------------- 495 (630)
T ss_pred HHhchhhhcH-----HHHHHHHHHH---H-----Hhc----ccc-------cceEEEeccCCc-----------------
Confidence 8877666665 3443333331 0 122 111 234555555521
Q ss_pred CcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHHH---------
Q 038067 322 GAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGR--------- 392 (510)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~--------- 392 (510)
.| |.-+.-+|||.+|.|+-+.+++..+++..+++..+.
T Consensus 496 ----------------------------gd-----lDsAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~ 542 (630)
T KOG0742|consen 496 ----------------------------GD-----LDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPG 542 (630)
T ss_pred ----------------------------cc-----hhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCc
Confidence 11 444666799999999999999999999988877662
Q ss_pred HHHHHHhcCCceeeeCH----HHHHHHHHhhCCCCCChhHHHHHHHHHH
Q 038067 393 QYKKMFSMNNVKLHFTD----DALRLIAKKAMAKNTGARGLRALLENIL 437 (510)
Q Consensus 393 ~~~~~~~~~~~~l~is~----~al~~La~~~~~~~~gaR~L~~~ie~~l 437 (510)
.+..+|+.....+.+.. ..+...+.. ..++..|.|..++-.+=
T Consensus 543 ~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkk--TeGfSGREiakLva~vQ 589 (630)
T KOG0742|consen 543 KWSHLFKKESQRIKLAGFDTGRKCSEAAKK--TEGFSGREIAKLVASVQ 589 (630)
T ss_pred hhhHHHhhhhheeeeccchHHHHHHHHHHh--ccCCcHHHHHHHHHHHH
Confidence 24555555555666544 444444543 45667899988887643
No 90
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.53 E-value=7.7e-14 Score=142.11 Aligned_cols=162 Identities=17% Similarity=0.246 Sum_probs=107.1
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccc-cccccchh-----hHHHHHHHhhchhHHHhcCcEEEEc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQA-GYVGEDAE-----SVLYKLLAAADFDVEAAQRGIVYID 235 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~-gy~G~~~~-----~~l~~l~~~~~~~~~~~~~~Vl~iD 235 (510)
..+++||.||||||||++++.+|+.++.|+++++++..... .++|...- .... -+...+.......++++++|
T Consensus 63 ~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~-~f~~GpL~~A~~~g~illlD 141 (327)
T TIGR01650 63 YDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQIT-EFRDGILPWALQHNVALCFD 141 (327)
T ss_pred cCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCccee-EEecCcchhHHhCCeEEEec
Confidence 45789999999999999999999999999999998866533 34554310 0000 11222222233466789999
Q ss_pred chhhhhhhccCCCCCCCchhhHHHHHHHHhh-CceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhc
Q 038067 236 EVDKIVKAESRNNGRDVSGEGVQQALLKMLE-GTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERR 314 (510)
Q Consensus 236 Eidkl~~~~~~~~~~~~~~~~v~~~LL~~le-g~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~ 314 (510)
||+++.+. ++..|..+|| ++.++++ +.+....+.. ++.+|+|.|..+
T Consensus 142 Ein~a~p~-------------~~~~L~~lLE~~~~l~i~--~~~~~i~~hp--------~FrviAT~Np~g--------- 189 (327)
T TIGR01650 142 EYDAGRPD-------------VMFVIQRVLEAGGKLTLL--DQNRVIRAHP--------AFRLFATANTIG--------- 189 (327)
T ss_pred hhhccCHH-------------HHHHHHHHhccCCeEEEC--CCceEecCCC--------CeEEEEeeCCCC---------
Confidence 99997655 8999999999 6777776 4444333333 444555555221
Q ss_pred ccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhc
Q 038067 315 QDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLME 385 (510)
Q Consensus 315 ~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~ 385 (510)
-+... .+..- -+.+++++++||-.++.+..++.++-.+|+..
T Consensus 190 ------~Gd~~----------------G~y~G-------t~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~ 231 (327)
T TIGR01650 190 ------LGDTT----------------GLYHG-------TQQINQAQMDRWSIVTTLNYLEHDNEAAIVLA 231 (327)
T ss_pred ------cCCCC----------------cceee-------eecCCHHHHhheeeEeeCCCCCHHHHHHHHHh
Confidence 00000 00000 02267899999998889999999999999864
No 91
>PLN03025 replication factor C subunit; Provisional
Probab=99.53 E-value=5.4e-14 Score=144.57 Aligned_cols=161 Identities=23% Similarity=0.296 Sum_probs=106.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhC-----CCeEEEeccccccccccccchhhHHHHHHHh---hchhHHHhcCcEEEEc
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVN-----VPFTITDATALTQAGYVGEDAESVLYKLLAA---ADFDVEAAQRGIVYID 235 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~-----~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~---~~~~~~~~~~~Vl~iD 235 (510)
.|++|+||||||||++|+++|+.+. ..++.+++++.. |. ..++..+.. ...........|++||
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~-----~~---~~vr~~i~~~~~~~~~~~~~~~kviiiD 106 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDR-----GI---DVVRNKIKMFAQKKVTLPPGRHKIVILD 106 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccc-----cH---HHHHHHHHHHHhccccCCCCCeEEEEEe
Confidence 4799999999999999999999872 235555555432 11 123333221 1100111245799999
Q ss_pred chhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcc
Q 038067 236 EVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQ 315 (510)
Q Consensus 236 Eidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~ 315 (510)
|+|.+... .|++|++.+|. ...++.||+++|..
T Consensus 107 E~d~lt~~-------------aq~aL~~~lE~-----------------------~~~~t~~il~~n~~----------- 139 (319)
T PLN03025 107 EADSMTSG-------------AQQALRRTMEI-----------------------YSNTTRFALACNTS----------- 139 (319)
T ss_pred chhhcCHH-------------HHHHHHHHHhc-----------------------ccCCceEEEEeCCc-----------
Confidence 99999765 59999999972 01122344444410
Q ss_pred cCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHH
Q 038067 316 DSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYK 395 (510)
Q Consensus 316 ~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~ 395 (510)
..+.|++.+|+. ++.|.+++.+++...+.. +.
T Consensus 140 ---------------------------------------~~i~~~L~SRc~-~i~f~~l~~~~l~~~L~~----i~---- 171 (319)
T PLN03025 140 ---------------------------------------SKIIEPIQSRCA-IVRFSRLSDQEILGRLMK----VV---- 171 (319)
T ss_pred ---------------------------------------cccchhHHHhhh-cccCCCCCHHHHHHHHHH----HH----
Confidence 125678899985 569999999999888864 11
Q ss_pred HHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHH
Q 038067 396 KMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLEN 435 (510)
Q Consensus 396 ~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~ 435 (510)
..+ .+.++++++++|++.+ +++.|.+-+.+|.
T Consensus 172 ---~~e--gi~i~~~~l~~i~~~~---~gDlR~aln~Lq~ 203 (319)
T PLN03025 172 ---EAE--KVPYVPEGLEAIIFTA---DGDMRQALNNLQA 203 (319)
T ss_pred ---HHc--CCCCCHHHHHHHHHHc---CCCHHHHHHHHHH
Confidence 223 4467899999999976 5667888888873
No 92
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.53 E-value=5.2e-14 Score=139.50 Aligned_cols=169 Identities=25% Similarity=0.326 Sum_probs=107.0
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhCC------CeEEEeccccccccccccchhhHHHHHHHhhc--hhHHHhcCcEEEE
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVNV------PFTITDATALTQAGYVGEDAESVLYKLLAAAD--FDVEAAQRGIVYI 234 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~~------p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~--~~~~~~~~~Vl~i 234 (510)
..|+|||||||||||+.|+++|+.++- .+...++++......+... -+.+..+..... ......+.-||+|
T Consensus 57 lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~K-ik~fakl~~~~~~~~~~~~~~fKiiIl 135 (346)
T KOG0989|consen 57 LPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREK-IKNFAKLTVLLKRSDGYPCPPFKIIIL 135 (346)
T ss_pred CceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhh-hcCHHHHhhccccccCCCCCcceEEEE
Confidence 368999999999999999999999954 2233455554322111111 111111111110 0001123379999
Q ss_pred cchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhc
Q 038067 235 DEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERR 314 (510)
Q Consensus 235 DEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~ 314 (510)
||.|.|... .|.+|.+.||. . ..++.||+-.|+.
T Consensus 136 DEcdsmtsd-------------aq~aLrr~mE~---------~--------------s~~trFiLIcnyl---------- 169 (346)
T KOG0989|consen 136 DECDSMTSD-------------AQAALRRTMED---------F--------------SRTTRFILICNYL---------- 169 (346)
T ss_pred echhhhhHH-------------HHHHHHHHHhc---------c--------------ccceEEEEEcCCh----------
Confidence 999999866 79999999983 1 1223344444421
Q ss_pred ccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHH
Q 038067 315 QDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQY 394 (510)
Q Consensus 315 ~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~ 394 (510)
..+++++.+|+..+ .|.+|..+++...++. +.
T Consensus 170 ----------------------------------------srii~pi~SRC~Kf-rFk~L~d~~iv~rL~~----Ia--- 201 (346)
T KOG0989|consen 170 ----------------------------------------SRIIRPLVSRCQKF-RFKKLKDEDIVDRLEK----IA--- 201 (346)
T ss_pred ----------------------------------------hhCChHHHhhHHHh-cCCCcchHHHHHHHHH----HH---
Confidence 12678999999876 9999999988887763 11
Q ss_pred HHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHH
Q 038067 395 KKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLEN 435 (510)
Q Consensus 395 ~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~ 435 (510)
. ...+.+++++++.|++.+ .+.-|.....+|.
T Consensus 202 ----~--~E~v~~d~~al~~I~~~S---~GdLR~Ait~Lqs 233 (346)
T KOG0989|consen 202 ----S--KEGVDIDDDALKLIAKIS---DGDLRRAITTLQS 233 (346)
T ss_pred ----H--HhCCCCCHHHHHHHHHHc---CCcHHHHHHHHHH
Confidence 2 234568999999999986 4455665555554
No 93
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.53 E-value=1.9e-14 Score=154.55 Aligned_cols=200 Identities=19% Similarity=0.301 Sum_probs=131.3
Q ss_pred ccCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccccc----cccccchhhHHHHHHHhhchhHHHhcCcEEE
Q 038067 161 LEKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALTQA----GYVGEDAESVLYKLLAAADFDVEAAQRGIVY 233 (510)
Q Consensus 161 ~~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~~~----gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~ 233 (510)
....++++.|++||||+++|++++... +.||+.++|..+.+. ..+|+.. +.++.......+.+..+.+|+||
T Consensus 164 ~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~-~~~~~~~~~~~g~~~~a~~gtl~ 242 (457)
T PRK11361 164 LSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEK-GAFTGAQTLRQGLFERANEGTLL 242 (457)
T ss_pred CCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCC-CCCCCCCCCCCCceEECCCCEEE
Confidence 356789999999999999999999876 479999999987532 1222211 00000000112233456789999
Q ss_pred EcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhh
Q 038067 234 IDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISER 313 (510)
Q Consensus 234 iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~ 313 (510)
||||+.++.. +|..|+++++.+.+. ..|+... ...++.+|++++. ++++.+.
T Consensus 243 ld~i~~l~~~-------------~q~~L~~~l~~~~~~----~~~~~~~--------~~~~~rii~~t~~-~l~~~~~-- 294 (457)
T PRK11361 243 LDEIGEMPLV-------------LQAKLLRILQEREFE----RIGGHQT--------IKVDIRIIAATNR-DLQAMVK-- 294 (457)
T ss_pred EechhhCCHH-------------HHHHHHHHHhcCcEE----eCCCCce--------eeeceEEEEeCCC-CHHHHHH--
Confidence 9999999876 799999999855443 1122111 1235566776652 2222221
Q ss_pred cccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCc-eEecCCCCH--HHHHHHHhchhHHH
Q 038067 314 RQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPI-LVSLSALNE--DQLVQVLMEPKNAL 390 (510)
Q Consensus 314 ~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~-iv~f~~Ls~--eel~~Il~~~~~~l 390 (510)
+..|++++..|+.. .|.++||.+ +|+..++.. +
T Consensus 295 ----------------------------------------~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~----~ 330 (457)
T PRK11361 295 ----------------------------------------EGTFREDLFYRLNVIHLILPPLRDRREDISLLANH----F 330 (457)
T ss_pred ----------------------------------------cCCchHHHHHHhccceecCCChhhchhhHHHHHHH----H
Confidence 12377888888865 478888874 677666664 3
Q ss_pred HHHHHHHHhcCCce-eeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHH
Q 038067 391 GRQYKKMFSMNNVK-LHFTDDALRLIAKKAMAKNTGARGLRALLENILT 438 (510)
Q Consensus 391 ~~~~~~~~~~~~~~-l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~ 438 (510)
+.++... .+.. ..+++++++.|.. |.|.++.|+|+++|++.+.
T Consensus 331 l~~~~~~---~~~~~~~~~~~a~~~L~~--~~wpgNv~eL~~~~~~~~~ 374 (457)
T PRK11361 331 LQKFSSE---NQRDIIDIDPMAMSLLTA--WSWPGNIRELSNVIERAVV 374 (457)
T ss_pred HHHHHHH---cCCCCCCcCHHHHHHHHc--CCCCCcHHHHHHHHHHHHH
Confidence 3333332 2333 5689999999998 5677789999999999775
No 94
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.53 E-value=7.5e-14 Score=150.61 Aligned_cols=201 Identities=19% Similarity=0.250 Sum_probs=133.9
Q ss_pred ccCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccccc----cccccchhhHHHHHHHhhchhHHHhcCcEEE
Q 038067 161 LEKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALTQA----GYVGEDAESVLYKLLAAADFDVEAAQRGIVY 233 (510)
Q Consensus 161 ~~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~~~----gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~ 233 (510)
....++++.|++|||||++|++++... +.||+.++|..+.+. ..+|+.. +.+........+.+..+.+|.||
T Consensus 159 ~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg~~~-g~~~~~~~~~~g~~~~a~~Gtl~ 237 (469)
T PRK10923 159 RSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEK-GAFTGANTIRQGRFEQADGGTLF 237 (469)
T ss_pred ccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcCCCC-CCCCCCCcCCCCCeeECCCCEEE
Confidence 356789999999999999999999987 469999999987431 1223221 11110001112234456789999
Q ss_pred EcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhh
Q 038067 234 IDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISER 313 (510)
Q Consensus 234 iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~ 313 (510)
||||+.++.. +|..|+++++.+.+. ..|+.. ....++.+|+|++. ++.+.+.
T Consensus 238 l~~i~~l~~~-------------~q~~L~~~l~~~~~~----~~~~~~--------~~~~~~rii~~~~~-~l~~~~~-- 289 (469)
T PRK10923 238 LDEIGDMPLD-------------VQTRLLRVLADGQFY----RVGGYA--------PVKVDVRIIAATHQ-NLEQRVQ-- 289 (469)
T ss_pred EeccccCCHH-------------HHHHHHHHHhcCcEE----eCCCCC--------eEEeeEEEEEeCCC-CHHHHHH--
Confidence 9999999876 799999999855443 122111 11245667776652 2222111
Q ss_pred cccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccC-ceEecCCCCH--HHHHHHHhchhHHH
Q 038067 314 RQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFP-ILVSLSALNE--DQLVQVLMEPKNAL 390 (510)
Q Consensus 314 ~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~-~iv~f~~Ls~--eel~~Il~~~~~~l 390 (510)
+..|+++|+.|+. ..|.++||.+ +|+..++...
T Consensus 290 ----------------------------------------~~~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~---- 325 (469)
T PRK10923 290 ----------------------------------------EGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHF---- 325 (469)
T ss_pred ----------------------------------------cCCchHHHHHHhcceeecCCCcccchhhHHHHHHHH----
Confidence 1238899999995 4688899875 6777777653
Q ss_pred HHHHHHHHhcCCce-eeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHH
Q 038067 391 GRQYKKMFSMNNVK-LHFTDDALRLIAKKAMAKNTGARGLRALLENILTE 439 (510)
Q Consensus 391 ~~~~~~~~~~~~~~-l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~ 439 (510)
+.++... .+.. ..+++++++.|.+ |.|.++.|+|++++++.+..
T Consensus 326 l~~~~~~---~~~~~~~~~~~a~~~L~~--~~wpgNv~eL~~~i~~~~~~ 370 (469)
T PRK10923 326 LQVAARE---LGVEAKLLHPETEAALTR--LAWPGNVRQLENTCRWLTVM 370 (469)
T ss_pred HHHHHHH---cCCCCCCcCHHHHHHHHh--CCCCChHHHHHHHHHHHHHh
Confidence 3333332 2333 3589999999998 56777899999999998753
No 95
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=2.8e-14 Score=138.58 Aligned_cols=97 Identities=31% Similarity=0.508 Sum_probs=81.3
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
+|..+|+|||||||||.+||++|+-.+.-|+++-.+++.+. |+|+. ..+++++|+.+. ...-+|||+||||.+.
T Consensus 210 ppkgvllygppgtgktl~aravanrtdacfirvigselvqk-yvgeg-armvrelf~mar----tkkaciiffdeidaig 283 (435)
T KOG0729|consen 210 PPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQK-YVGEG-ARMVRELFEMAR----TKKACIIFFDEIDAIG 283 (435)
T ss_pred CCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHH-Hhhhh-HHHHHHHHHHhc----ccceEEEEeecccccc
Confidence 78999999999999999999999999999999999999965 99997 788999998873 3466899999999998
Q ss_pred hhccCCCCCCCchhhHHHHHHHHhh
Q 038067 242 KAESRNNGRDVSGEGVQQALLKMLE 266 (510)
Q Consensus 242 ~~~~~~~~~~~~~~~v~~~LL~~le 266 (510)
.++-+.+.. +.++||...|.++.
T Consensus 284 garfddg~g--gdnevqrtmleli~ 306 (435)
T KOG0729|consen 284 GARFDDGAG--GDNEVQRTMLELIN 306 (435)
T ss_pred CccccCCCC--CcHHHHHHHHHHHH
Confidence 765433211 12369999999885
No 96
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=1.9e-13 Score=143.04 Aligned_cols=171 Identities=24% Similarity=0.295 Sum_probs=106.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhCCCe--EEE------ecccccccc---c--c-cc--chhhHHHHHHHhhchhHHHh
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVNVPF--TIT------DATALTQAG---Y--V-GE--DAESVLYKLLAAADFDVEAA 227 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~~p~--~~~------~~s~l~~~g---y--~-G~--~~~~~l~~l~~~~~~~~~~~ 227 (510)
+.+||+||+|+|||++|+++|+.++... ..- .|..+.... + + +. ..-..++.+.......-...
T Consensus 39 h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~ 118 (363)
T PRK14961 39 HAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKS 118 (363)
T ss_pred eEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccC
Confidence 4579999999999999999999985211 000 001110000 0 0 00 01122334333321111123
Q ss_pred cCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchH
Q 038067 228 QRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLE 307 (510)
Q Consensus 228 ~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~ 307 (510)
...|++|||+|++... .++.||+.+|. ...++.||++++..
T Consensus 119 ~~kviIIDEa~~l~~~-------------a~naLLk~lEe-----------------------~~~~~~fIl~t~~~--- 159 (363)
T PRK14961 119 RFKVYLIDEVHMLSRH-------------SFNALLKTLEE-----------------------PPQHIKFILATTDV--- 159 (363)
T ss_pred CceEEEEEChhhcCHH-------------HHHHHHHHHhc-----------------------CCCCeEEEEEcCCh---
Confidence 4569999999998754 68999999983 11234555554410
Q ss_pred HHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchh
Q 038067 308 KTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPK 387 (510)
Q Consensus 308 ~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~ 387 (510)
..+.+.+.+|+ ..+.|.+++.+++.+++...+
T Consensus 160 -----------------------------------------------~~l~~tI~SRc-~~~~~~~l~~~el~~~L~~~~ 191 (363)
T PRK14961 160 -----------------------------------------------EKIPKTILSRC-LQFKLKIISEEKIFNFLKYIL 191 (363)
T ss_pred -----------------------------------------------HhhhHHHHhhc-eEEeCCCCCHHHHHHHHHHHH
Confidence 01556788898 457999999999998886411
Q ss_pred HHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHH
Q 038067 388 NALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENIL 437 (510)
Q Consensus 388 ~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l 437 (510)
...+ +.+++++++.|++.+ +++.|.+.+.++..+
T Consensus 192 -----------~~~g--~~i~~~al~~ia~~s---~G~~R~al~~l~~~~ 225 (363)
T PRK14961 192 -----------IKES--IDTDEYALKLIAYHA---HGSMRDALNLLEHAI 225 (363)
T ss_pred -----------HHcC--CCCCHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 1123 567999999999975 556888888888765
No 97
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.51 E-value=2e-13 Score=150.62 Aligned_cols=163 Identities=25% Similarity=0.317 Sum_probs=110.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhCCC------------------------eEEEeccccccccccccchhhHHHHHHHh
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVNVP------------------------FTITDATALTQAGYVGEDAESVLYKLLAA 219 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~~p------------------------~~~~~~s~l~~~gy~G~~~~~~l~~l~~~ 219 (510)
+.+||+||+|||||++|+.+|+.++.. ++.++.+. ..+ -..++++...
T Consensus 39 hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieidaas-----~~~---VddiR~li~~ 110 (647)
T PRK07994 39 HAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEIDAAS-----RTK---VEDTRELLDN 110 (647)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceeecccc-----cCC---HHHHHHHHHH
Confidence 447999999999999999999998541 12222211 011 1234455444
Q ss_pred hchhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeec
Q 038067 220 ADFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFIC 299 (510)
Q Consensus 220 ~~~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~ 299 (510)
..+.-......|++|||+|+|... .++.||+.||. ...++.||+
T Consensus 111 ~~~~p~~g~~KV~IIDEah~Ls~~-------------a~NALLKtLEE-----------------------Pp~~v~FIL 154 (647)
T PRK07994 111 VQYAPARGRFKVYLIDEVHMLSRH-------------SFNALLKTLEE-----------------------PPEHVKFLL 154 (647)
T ss_pred HHhhhhcCCCEEEEEechHhCCHH-------------HHHHHHHHHHc-----------------------CCCCeEEEE
Confidence 322222345679999999999865 69999999983 123456666
Q ss_pred CCCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHH
Q 038067 300 GGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQL 379 (510)
Q Consensus 300 tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel 379 (510)
+++.. ..+.|.+++|+ ..+.|.+++.+++
T Consensus 155 ~Tt~~--------------------------------------------------~kLl~TI~SRC-~~~~f~~Ls~~ei 183 (647)
T PRK07994 155 ATTDP--------------------------------------------------QKLPVTILSRC-LQFHLKALDVEQI 183 (647)
T ss_pred ecCCc--------------------------------------------------cccchHHHhhh-eEeeCCCCCHHHH
Confidence 55410 12667889997 5569999999998
Q ss_pred HHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHH
Q 038067 380 VQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENIL 437 (510)
Q Consensus 380 ~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l 437 (510)
...+...+ ... .+.++++++..|+..+ .+..|...++++..+
T Consensus 184 ~~~L~~il-----------~~e--~i~~e~~aL~~Ia~~s---~Gs~R~Al~lldqai 225 (647)
T PRK07994 184 RQQLEHIL-----------QAE--QIPFEPRALQLLARAA---DGSMRDALSLTDQAI 225 (647)
T ss_pred HHHHHHHH-----------HHc--CCCCCHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 88886411 112 3567999999999886 666888888876554
No 98
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.51 E-value=2.2e-13 Score=152.86 Aligned_cols=170 Identities=27% Similarity=0.360 Sum_probs=115.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHH-HhcCcEEEEcchhhhhh
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVE-AAQRGIVYIDEVDKIVK 242 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~-~~~~~Vl~iDEidkl~~ 242 (510)
.+++|+||||||||++|+++|+.++.+|+.+++.... . ..+...+........ .....+|||||||.+..
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~---i------~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~ 123 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAG---V------KDLRAEVDRAKERLERHGKRTILFIDEVHRFNK 123 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhh---h------HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH
Confidence 5899999999999999999999999999888875321 0 112222222111111 12457999999999876
Q ss_pred hccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCcC
Q 038067 243 AESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGFG 322 (510)
Q Consensus 243 ~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf~ 322 (510)
. .|+.|+..++.+. +++|++++..
T Consensus 124 ~-------------qQdaLL~~lE~g~-------------------------IiLI~aTTen------------------ 147 (725)
T PRK13341 124 A-------------QQDALLPWVENGT-------------------------ITLIGATTEN------------------ 147 (725)
T ss_pred H-------------HHHHHHHHhcCce-------------------------EEEEEecCCC------------------
Confidence 5 5889999987321 2334332200
Q ss_pred cccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHhcCC
Q 038067 323 APVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFSMNN 402 (510)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~~~~ 402 (510)
+ ...+.+++++|.. ++.|++|+.+++..|+...+.. +...+ ..
T Consensus 148 --------------------------p----~~~l~~aL~SR~~-v~~l~pLs~edi~~IL~~~l~~----~~~~~--g~ 190 (725)
T PRK13341 148 --------------------------P----YFEVNKALVSRSR-LFRLKSLSDEDLHQLLKRALQD----KERGY--GD 190 (725)
T ss_pred --------------------------h----HhhhhhHhhcccc-ceecCCCCHHHHHHHHHHHHHH----HHhhc--CC
Confidence 0 0125668888864 5799999999999999864322 22111 12
Q ss_pred ceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHH
Q 038067 403 VKLHFTDDALRLIAKKAMAKNTGARGLRALLENILT 438 (510)
Q Consensus 403 ~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~ 438 (510)
..+.++++++++|++.+ .+++|.+.++++.++.
T Consensus 191 ~~v~I~deaL~~La~~s---~GD~R~lln~Le~a~~ 223 (725)
T PRK13341 191 RKVDLEPEAEKHLVDVA---NGDARSLLNALELAVE 223 (725)
T ss_pred cccCCCHHHHHHHHHhC---CCCHHHHHHHHHHHHH
Confidence 35678999999999975 6779999999998763
No 99
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1.6e-13 Score=143.31 Aligned_cols=193 Identities=24% Similarity=0.330 Sum_probs=138.4
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
+.+.+||+||||+|||+|++++|.+.+..|+.+.++.++. .|+|+. +..++.+|.-+ +..+++|+||||||++.
T Consensus 185 p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLts-K~~Ge~-eK~vralf~vA----r~~qPsvifidEidsll 258 (428)
T KOG0740|consen 185 PVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTS-KYVGES-EKLVRALFKVA----RSLQPSVIFIDEIDSLL 258 (428)
T ss_pred ccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhh-hccChH-HHHHHHHHHHH----HhcCCeEEEechhHHHH
Confidence 6678999999999999999999999999999999999995 499998 78888888766 56789999999999999
Q ss_pred hhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCc
Q 038067 242 KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGF 321 (510)
Q Consensus 242 ~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf 321 (510)
..+ ....++.+++--.+.|++..- ....... ++++|.|+|-
T Consensus 259 s~R-s~~e~e~srr~ktefLiq~~~------------~~s~~~d--------rvlvigaTN~------------------ 299 (428)
T KOG0740|consen 259 SKR-SDNEHESSRRLKTEFLLQFDG------------KNSAPDD--------RVLVIGATNR------------------ 299 (428)
T ss_pred hhc-CCcccccchhhhhHHHhhhcc------------ccCCCCC--------eEEEEecCCC------------------
Confidence 777 344566666655556666542 1111122 5556655551
Q ss_pred CcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHhcC
Q 038067 322 GAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFSMN 401 (510)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~~~ 401 (510)
|.+ +...++.||..++.++.++.+....++.. ++.. +
T Consensus 300 ---------------------------P~e-----~Dea~~Rrf~kr~yiplPd~etr~~~~~~----ll~~-------~ 336 (428)
T KOG0740|consen 300 ---------------------------PWE-----LDEAARRRFVKRLYIPLPDYETRSLLWKQ----LLKE-------Q 336 (428)
T ss_pred ---------------------------chH-----HHHHHHHHhhceeeecCCCHHHHHHHHHH----HHHh-------C
Confidence 111 23356668888888999999998888874 3222 2
Q ss_pred CceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHHhcCcC
Q 038067 402 NVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPE 446 (510)
Q Consensus 402 ~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~~~~~ 446 (510)
.-.+++..++.|++. ..+++.-.+..++.......+.+..+
T Consensus 337 --~~~l~~~d~~~l~~~--Tegysgsdi~~l~kea~~~p~r~~~~ 377 (428)
T KOG0740|consen 337 --PNGLSDLDISLLAKV--TEGYSGSDITALCKEAAMGPLRELGG 377 (428)
T ss_pred --CCCccHHHHHHHHHH--hcCcccccHHHHHHHhhcCchhhccc
Confidence 233567788888885 34455556777777766666665554
No 100
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=6.1e-14 Score=135.86 Aligned_cols=96 Identities=30% Similarity=0.528 Sum_probs=78.4
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
+|.++|+|||||||||.+||+.|...+..|+.+-...+.+. |+|.. .+.++.+|.-+ .+..++||||||+|.+.
T Consensus 204 pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQM-fIGdG-AkLVRDAFaLA----KEkaP~IIFIDElDAIG 277 (424)
T KOG0652|consen 204 PPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM-FIGDG-AKLVRDAFALA----KEKAPTIIFIDELDAIG 277 (424)
T ss_pred CCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhh-hhcch-HHHHHHHHHHh----hccCCeEEEEechhhhc
Confidence 78999999999999999999999999999999988888865 89987 67788877665 45678999999999998
Q ss_pred hhccCCCCCCCch-hhHHHHHHHHhh
Q 038067 242 KAESRNNGRDVSG-EGVQQALLKMLE 266 (510)
Q Consensus 242 ~~~~~~~~~~~~~-~~v~~~LL~~le 266 (510)
..+.++ +.+| ++||...|.+|.
T Consensus 278 tKRfDS---ek~GDREVQRTMLELLN 300 (424)
T KOG0652|consen 278 TKRFDS---EKAGDREVQRTMLELLN 300 (424)
T ss_pred cccccc---cccccHHHHHHHHHHHH
Confidence 544322 2222 369999988886
No 101
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.50 E-value=3.1e-13 Score=153.26 Aligned_cols=169 Identities=23% Similarity=0.340 Sum_probs=118.1
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh----------CCCeEEEecccccc-ccccccchhhHHHHHHHhhchhHHHhcCc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV----------NVPFTITDATALTQ-AGYVGEDAESVLYKLLAAADFDVEAAQRG 230 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l----------~~p~~~~~~s~l~~-~gy~G~~~~~~l~~l~~~~~~~~~~~~~~ 230 (510)
.+.|++|+||||||||++|+.+|+.+ +..++.++++.+.. ..|.|+- +..+..++..+ ....+.
T Consensus 202 ~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~-e~~l~~i~~~~----~~~~~~ 276 (731)
T TIGR02639 202 KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDF-EERLKAVVSEI----EKEPNA 276 (731)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchH-HHHHHHHHHHH----hccCCe
Confidence 45689999999999999999999987 56788888887763 3477654 56677777654 223578
Q ss_pred EEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHH
Q 038067 231 IVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTI 310 (510)
Q Consensus 231 Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i 310 (510)
||||||||.+..+..... +...+++.|+..|+.+ ++.+|.+++..+..+.+
T Consensus 277 ILfiDEih~l~~~g~~~~----~~~~~~~~L~~~l~~g-------------------------~i~~IgaTt~~e~~~~~ 327 (731)
T TIGR02639 277 ILFIDEIHTIVGAGATSG----GSMDASNLLKPALSSG-------------------------KLRCIGSTTYEEYKNHF 327 (731)
T ss_pred EEEEecHHHHhccCCCCC----ccHHHHHHHHHHHhCC-------------------------CeEEEEecCHHHHHHHh
Confidence 999999999986532111 1123678888888622 24455555532221111
Q ss_pred HhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHH
Q 038067 311 SERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNAL 390 (510)
Q Consensus 311 ~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l 390 (510)
-..|+|.+||. .|.+.+++.++..+|++. +
T Consensus 328 ---------------------------------------------~~d~al~rRf~-~i~v~~p~~~~~~~il~~----~ 357 (731)
T TIGR02639 328 ---------------------------------------------EKDRALSRRFQ-KIDVGEPSIEETVKILKG----L 357 (731)
T ss_pred ---------------------------------------------hhhHHHHHhCc-eEEeCCCCHHHHHHHHHH----H
Confidence 14678999997 579999999999999985 3
Q ss_pred HHHHHHHHhcCCceeeeCHHHHHHHHHhh
Q 038067 391 GRQYKKMFSMNNVKLHFTDDALRLIAKKA 419 (510)
Q Consensus 391 ~~~~~~~~~~~~~~l~is~~al~~La~~~ 419 (510)
...|.. ...+.++++++.++++.+
T Consensus 358 ~~~~e~-----~~~v~i~~~al~~~~~ls 381 (731)
T TIGR02639 358 KEKYEE-----FHHVKYSDEALEAAVELS 381 (731)
T ss_pred HHHHHh-----ccCcccCHHHHHHHHHhh
Confidence 333322 234678999999998865
No 102
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.50 E-value=1.1e-13 Score=142.86 Aligned_cols=145 Identities=32% Similarity=0.370 Sum_probs=97.1
Q ss_pred ChHHHHhhhccccccchhhhhccchhhhhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhhcccccccccccCCccCCCCCC
Q 038067 74 TPKEICKGLDEFVIGQERAKKSHIFCILVDMLVYVIGACCAVYNHYKRIYHSSLQKELVSDHLYVDSILGSGVKSGNCNV 153 (510)
Q Consensus 74 ~~~el~~~L~~~ViGQ~~ak~~~~~~~~~~~~~~~~~l~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 153 (510)
....+...+.+.++|++.++.. +..++.
T Consensus 14 ~~~~~~~~~~~~~~g~~~~~~~---------------~l~a~~------------------------------------- 41 (329)
T COG0714 14 ILGKIRSELEKVVVGDEEVIEL---------------ALLALL------------------------------------- 41 (329)
T ss_pred HHHHHHhhcCCeeeccHHHHHH---------------HHHHHH-------------------------------------
Confidence 4556788888889999998887 555553
Q ss_pred CcchhhhccCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccc-cccccchhhHH---HHHHHhhchhHHHhcC
Q 038067 154 ENDEIVELEKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQA-GYVGEDAESVL---YKLLAAADFDVEAAQR 229 (510)
Q Consensus 154 ~~~~~~~~~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~-gy~G~~~~~~l---~~l~~~~~~~~~~~~~ 229 (510)
...++||.||||||||++|+.+|+.++.+|++++|+....+ ..+|...-... ...+.-.++.+-.+..
T Consensus 42 --------~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~ 113 (329)
T COG0714 42 --------AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR 113 (329)
T ss_pred --------cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc
Confidence 55799999999999999999999999999999999955432 22332211100 0000001111111222
Q ss_pred cEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCC
Q 038067 230 GIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKD 294 (510)
Q Consensus 230 ~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsn 294 (510)
+|+|+|||++..+. +|++||++|+++.++++ .... ......++++.|+|
T Consensus 114 ~ill~DEInra~p~-------------~q~aLl~~l~e~~vtv~--~~~~-~~~~~~f~viaT~N 162 (329)
T COG0714 114 VILLLDEINRAPPE-------------VQNALLEALEERQVTVP--GLTT-IRLPPPFIVIATQN 162 (329)
T ss_pred eEEEEeccccCCHH-------------HHHHHHHHHhCcEEEEC--CcCC-cCCCCCCEEEEccC
Confidence 69999999997765 89999999999999876 2221 33333344444444
No 103
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=3.5e-13 Score=146.67 Aligned_cols=164 Identities=24% Similarity=0.316 Sum_probs=109.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhCC-------C-----------------eEEEeccccccccccccchhhHHHHHHHh
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVNV-------P-----------------FTITDATALTQAGYVGEDAESVLYKLLAA 219 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~~-------p-----------------~~~~~~s~l~~~gy~G~~~~~~l~~l~~~ 219 (510)
+.+||+||+|||||++|+.+|+.++. | ++.+++.. ..|. ..++.++..
T Consensus 39 ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas-----~~gv---d~ir~ii~~ 110 (546)
T PRK14957 39 HAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAAS-----RTGV---EETKEILDN 110 (546)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeeccc-----ccCH---HHHHHHHHH
Confidence 45899999999999999999998852 1 12222211 1111 122333333
Q ss_pred hchhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeec
Q 038067 220 ADFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFIC 299 (510)
Q Consensus 220 ~~~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~ 299 (510)
....-..+...|++|||+|++... .++.||+.||. ...+++||+
T Consensus 111 ~~~~p~~g~~kViIIDEa~~ls~~-------------a~naLLK~LEe-----------------------pp~~v~fIL 154 (546)
T PRK14957 111 IQYMPSQGRYKVYLIDEVHMLSKQ-------------SFNALLKTLEE-----------------------PPEYVKFIL 154 (546)
T ss_pred HHhhhhcCCcEEEEEechhhccHH-------------HHHHHHHHHhc-----------------------CCCCceEEE
Confidence 221112345679999999998765 69999999983 112344555
Q ss_pred CCCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHH
Q 038067 300 GGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQL 379 (510)
Q Consensus 300 tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel 379 (510)
+++.. ..+.+.+++|+ .++.|.+++.+++
T Consensus 155 ~Ttd~--------------------------------------------------~kil~tI~SRc-~~~~f~~Ls~~eI 183 (546)
T PRK14957 155 ATTDY--------------------------------------------------HKIPVTILSRC-IQLHLKHISQADI 183 (546)
T ss_pred EECCh--------------------------------------------------hhhhhhHHHhe-eeEEeCCCCHHHH
Confidence 44310 12455688899 4569999999998
Q ss_pred HHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHH
Q 038067 380 VQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILT 438 (510)
Q Consensus 380 ~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~ 438 (510)
.+.+... . ...+ +.+++++++.|++.+ +++.|.+.+.++.++.
T Consensus 184 ~~~L~~i----l-------~~eg--i~~e~~Al~~Ia~~s---~GdlR~alnlLek~i~ 226 (546)
T PRK14957 184 KDQLKII----L-------AKEN--INSDEQSLEYIAYHA---KGSLRDALSLLDQAIS 226 (546)
T ss_pred HHHHHHH----H-------HHcC--CCCCHHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 8887641 1 1233 568999999999986 6668999999988763
No 104
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=2.8e-13 Score=145.54 Aligned_cols=166 Identities=24% Similarity=0.326 Sum_probs=112.6
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCC------------------------CeEEEeccccccccccccchhhHHHHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNV------------------------PFTITDATALTQAGYVGEDAESVLYKLL 217 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~------------------------p~~~~~~s~l~~~gy~G~~~~~~l~~l~ 217 (510)
.+.++||+||+|+|||++|+.+|+.++. .++.+|+++-. | -..++.++
T Consensus 34 i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~~-----~---vddIR~Ii 105 (491)
T PRK14964 34 IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASNT-----S---VDDIKVIL 105 (491)
T ss_pred CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEecccCC-----C---HHHHHHHH
Confidence 3467999999999999999999997632 23444443211 1 12344444
Q ss_pred HhhchhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCcee
Q 038067 218 AAADFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILF 297 (510)
Q Consensus 218 ~~~~~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilf 297 (510)
....+.-..+...|++|||+|.+... .+++||+.||. ....+.|
T Consensus 106 e~~~~~P~~~~~KVvIIDEah~Ls~~-------------A~NaLLK~LEe-----------------------Pp~~v~f 149 (491)
T PRK14964 106 ENSCYLPISSKFKVYIIDEVHMLSNS-------------AFNALLKTLEE-----------------------PAPHVKF 149 (491)
T ss_pred HHHHhccccCCceEEEEeChHhCCHH-------------HHHHHHHHHhC-----------------------CCCCeEE
Confidence 44322212346679999999998764 69999999983 1123455
Q ss_pred ecCCCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHH
Q 038067 298 ICGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNED 377 (510)
Q Consensus 298 I~tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~e 377 (510)
|++++. . ..+.+.+++|+.. +.|.+++.+
T Consensus 150 Ilatte--~------------------------------------------------~Kl~~tI~SRc~~-~~f~~l~~~ 178 (491)
T PRK14964 150 ILATTE--V------------------------------------------------KKIPVTIISRCQR-FDLQKIPTD 178 (491)
T ss_pred EEEeCC--h------------------------------------------------HHHHHHHHHhhee-eecccccHH
Confidence 555441 0 1144577888855 699999999
Q ss_pred HHHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHH
Q 038067 378 QLVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILT 438 (510)
Q Consensus 378 el~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~ 438 (510)
++.+.+.. +. ..+ .+.+++++++.|++.+ +++.|.+.+.++..+.
T Consensus 179 el~~~L~~----ia-------~~E--gi~i~~eAL~lIa~~s---~GslR~alslLdqli~ 223 (491)
T PRK14964 179 KLVEHLVD----IA-------KKE--NIEHDEESLKLIAENS---SGSMRNALFLLEQAAI 223 (491)
T ss_pred HHHHHHHH----HH-------HHc--CCCCCHHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 98888864 11 122 4568999999999986 6678998888888764
No 105
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.50 E-value=3.7e-13 Score=145.49 Aligned_cols=173 Identities=25% Similarity=0.346 Sum_probs=112.4
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhCCCeE-----------EE-ecccccc---cccc-----ccchhhHHHHHHHhhch
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVNVPFT-----------IT-DATALTQ---AGYV-----GEDAESVLYKLLAAADF 222 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~-----------~~-~~s~l~~---~gy~-----G~~~~~~l~~l~~~~~~ 222 (510)
+.++||+||+|||||++|+.+|+.++.... .+ +|..+.. +.+. .......++.++..+.+
T Consensus 43 ~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~ 122 (507)
T PRK06645 43 AGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEY 122 (507)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHh
Confidence 468999999999999999999999853210 00 0111110 0000 00012234555544432
Q ss_pred hHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCC
Q 038067 223 DVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGA 302 (510)
Q Consensus 223 ~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~ 302 (510)
.-..+...|++|||++.+... .++.|++.||. ...+++||++++
T Consensus 123 ~P~~~~~KVvIIDEa~~Ls~~-------------a~naLLk~LEe-----------------------pp~~~vfI~aTt 166 (507)
T PRK06645 123 KPLQGKHKIFIIDEVHMLSKG-------------AFNALLKTLEE-----------------------PPPHIIFIFATT 166 (507)
T ss_pred ccccCCcEEEEEEChhhcCHH-------------HHHHHHHHHhh-----------------------cCCCEEEEEEeC
Confidence 222346689999999998754 69999999982 123455665544
Q ss_pred ccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHH
Q 038067 303 FVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQV 382 (510)
Q Consensus 303 ~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~I 382 (510)
.. ..+.+.+.+|+. .+.|.+++.+++.++
T Consensus 167 e~--------------------------------------------------~kI~~tI~SRc~-~~ef~~ls~~el~~~ 195 (507)
T PRK06645 167 EV--------------------------------------------------QKIPATIISRCQ-RYDLRRLSFEEIFKL 195 (507)
T ss_pred Ch--------------------------------------------------HHhhHHHHhcce-EEEccCCCHHHHHHH
Confidence 10 014557888884 569999999999988
Q ss_pred HhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHH
Q 038067 383 LMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILT 438 (510)
Q Consensus 383 l~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~ 438 (510)
+...+ ...+ +.+++++++.|++.+ +++.|.+.+.+++++.
T Consensus 196 L~~i~-----------~~eg--i~ie~eAL~~Ia~~s---~GslR~al~~Ldkai~ 235 (507)
T PRK06645 196 LEYIT-----------KQEN--LKTDIEALRIIAYKS---EGSARDAVSILDQAAS 235 (507)
T ss_pred HHHHH-----------HHcC--CCCCHHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 87421 2233 557999999999976 6678999999988763
No 106
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=2.9e-13 Score=153.70 Aligned_cols=163 Identities=24% Similarity=0.286 Sum_probs=109.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhCC-------C-------------------eEEEeccccccccccccchhhHHHHHH
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVNV-------P-------------------FTITDATALTQAGYVGEDAESVLYKLL 217 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~~-------p-------------------~~~~~~s~l~~~gy~G~~~~~~l~~l~ 217 (510)
+.+||+||+|||||++|+.||+.++. | ++.++.... .+ -..++++.
T Consensus 38 Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas~-----~~---Vd~iR~l~ 109 (824)
T PRK07764 38 HAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEIDAASH-----GG---VDDARELR 109 (824)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEeccccc-----CC---HHHHHHHH
Confidence 45899999999999999999999952 1 111111110 01 12234443
Q ss_pred HhhchhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCcee
Q 038067 218 AAADFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILF 297 (510)
Q Consensus 218 ~~~~~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilf 297 (510)
....+.-......|+||||+|+|... .++.||+.||. ...+++|
T Consensus 110 ~~~~~~p~~~~~KV~IIDEad~lt~~-------------a~NaLLK~LEE-----------------------pP~~~~f 153 (824)
T PRK07764 110 ERAFFAPAESRYKIFIIDEAHMVTPQ-------------GFNALLKIVEE-----------------------PPEHLKF 153 (824)
T ss_pred HHHHhchhcCCceEEEEechhhcCHH-------------HHHHHHHHHhC-----------------------CCCCeEE
Confidence 33322223356679999999999865 69999999983 1235566
Q ss_pred ecCCCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHH
Q 038067 298 ICGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNED 377 (510)
Q Consensus 298 I~tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~e 377 (510)
||+++.. + .+.+.+++|+.. +.|.+++.+
T Consensus 154 Il~tt~~--~------------------------------------------------kLl~TIrSRc~~-v~F~~l~~~ 182 (824)
T PRK07764 154 IFATTEP--D------------------------------------------------KVIGTIRSRTHH-YPFRLVPPE 182 (824)
T ss_pred EEEeCCh--h------------------------------------------------hhhHHHHhheeE-EEeeCCCHH
Confidence 6654411 0 145577888854 599999999
Q ss_pred HHHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHH
Q 038067 378 QLVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENIL 437 (510)
Q Consensus 378 el~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l 437 (510)
++.++|.+. +..++ +.++++++.+|++.+ +++.|.+.+.|++++
T Consensus 183 ~l~~~L~~i-----------l~~EG--v~id~eal~lLa~~s---gGdlR~Al~eLEKLi 226 (824)
T PRK07764 183 VMRGYLERI-----------CAQEG--VPVEPGVLPLVIRAG---GGSVRDSLSVLDQLL 226 (824)
T ss_pred HHHHHHHHH-----------HHHcC--CCCCHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 998888641 12234 557999999999986 556899999998877
No 107
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=3e-13 Score=148.98 Aligned_cols=172 Identities=23% Similarity=0.334 Sum_probs=111.8
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhCCCe-------EEEe-ccccccccc---------cccchhhHHHHHHHhhchhHH
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVNVPF-------TITD-ATALTQAGY---------VGEDAESVLYKLLAAADFDVE 225 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~~p~-------~~~~-~s~l~~~gy---------~G~~~~~~l~~l~~~~~~~~~ 225 (510)
++.+||+||+|||||++|+.+|+.++.+- -.+. |..+....| .... ...+++++....+.-.
T Consensus 38 ~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEidaAs~~g-Vd~IRelle~a~~~P~ 116 (709)
T PRK08691 38 HHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTG-IDNIREVLENAQYAPT 116 (709)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEeccccCC-HHHHHHHHHHHHhhhh
Confidence 45799999999999999999999985321 1110 000000000 0011 1235555544322222
Q ss_pred HhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccc
Q 038067 226 AAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVG 305 (510)
Q Consensus 226 ~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~ 305 (510)
.....|++|||+|++... .++.||+.||. ...++.||++++..
T Consensus 117 ~gk~KVIIIDEad~Ls~~-------------A~NALLKtLEE-----------------------Pp~~v~fILaTtd~- 159 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSKS-------------AFNAMLKTLEE-----------------------PPEHVKFILATTDP- 159 (709)
T ss_pred hCCcEEEEEECccccCHH-------------HHHHHHHHHHh-----------------------CCCCcEEEEEeCCc-
Confidence 345679999999998754 68999999983 11345566655411
Q ss_pred hHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhc
Q 038067 306 LEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLME 385 (510)
Q Consensus 306 l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~ 385 (510)
..+.+.+++|+-. +.|.+++.+++...+..
T Consensus 160 -------------------------------------------------~kL~~TIrSRC~~-f~f~~Ls~eeI~~~L~~ 189 (709)
T PRK08691 160 -------------------------------------------------HKVPVTVLSRCLQ-FVLRNMTAQQVADHLAH 189 (709)
T ss_pred -------------------------------------------------cccchHHHHHHhh-hhcCCCCHHHHHHHHHH
Confidence 1255678889844 58999999999888864
Q ss_pred hhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHH
Q 038067 386 PKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILT 438 (510)
Q Consensus 386 ~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~ 438 (510)
+ +...+ +.+++++++.|++.+ .++.|.+.++++.++.
T Consensus 190 ----I-------l~kEg--i~id~eAL~~Ia~~A---~GslRdAlnLLDqaia 226 (709)
T PRK08691 190 ----V-------LDSEK--IAYEPPALQLLGRAA---AGSMRDALSLLDQAIA 226 (709)
T ss_pred ----H-------HHHcC--CCcCHHHHHHHHHHh---CCCHHHHHHHHHHHHH
Confidence 1 12233 568999999999986 6778999999987764
No 108
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.49 E-value=3.3e-13 Score=139.32 Aligned_cols=207 Identities=20% Similarity=0.290 Sum_probs=122.2
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhC-------CCeEEEeccc-------ccc--------------ccc----cccchh
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVN-------VPFTITDATA-------LTQ--------------AGY----VGEDAE 210 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~-------~p~~~~~~s~-------l~~--------------~gy----~G~~~~ 210 (510)
.+++||.||+|||||++||++++.+. .||. .+... ... .-+ .|...+
T Consensus 38 ~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted 116 (350)
T CHL00081 38 IGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SHPSDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATED 116 (350)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CCCCChhhhchhhhhhhcccccccceeccccceecCCCCchh
Confidence 35799999999999999999998882 2332 11100 000 000 011111
Q ss_pred hH-----HHHHHHh-----hchhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCC
Q 038067 211 SV-----LYKLLAA-----ADFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPR 280 (510)
Q Consensus 211 ~~-----l~~l~~~-----~~~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~ 280 (510)
.. +...+.. .++.+.++++|+||||||+.+.+. +|+.|+++|+.+.+++. ..|..
T Consensus 117 ~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~-------------~Q~~LLeam~e~~~~ie--r~G~s 181 (350)
T CHL00081 117 RVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDH-------------LVDILLDSAASGWNTVE--REGIS 181 (350)
T ss_pred hccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHH-------------HHHHHHHHHHhCCeEEe--eCCee
Confidence 10 1111111 133455678899999999999876 89999999986555543 23322
Q ss_pred CCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchh
Q 038067 281 KHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPE 360 (510)
Q Consensus 281 ~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pe 360 (510)
. -...++++|+|.|.. ...|+++
T Consensus 182 ~--------~~p~rfiviaT~np~-------------------------------------------------eg~l~~~ 204 (350)
T CHL00081 182 I--------RHPARFVLVGSGNPE-------------------------------------------------EGELRPQ 204 (350)
T ss_pred e--------ecCCCEEEEeccCcc-------------------------------------------------cCCCCHH
Confidence 1 122355666655511 1238889
Q ss_pred hhcccCceEecCCCC-HHHHHHHHhchhHH------HHHHH--------HHHH--hcCCceeeeCHHHHHHHHHhhCC-C
Q 038067 361 FIGRFPILVSLSALN-EDQLVQVLMEPKNA------LGRQY--------KKMF--SMNNVKLHFTDDALRLIAKKAMA-K 422 (510)
Q Consensus 361 fl~R~~~iv~f~~Ls-~eel~~Il~~~~~~------l~~~~--------~~~~--~~~~~~l~is~~al~~La~~~~~-~ 422 (510)
|+.||...+.+..++ .++..+|++..... ..+.| .+.. ...--.+.++++++++|++.+.. .
T Consensus 205 LldRf~l~i~l~~~~~~~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~ 284 (350)
T CHL00081 205 LLDRFGMHAEIRTVKDPELRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELD 284 (350)
T ss_pred HHHHhCceeecCCCCChHHHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHC
Confidence 999999999999988 47777888753210 01111 0111 11123467899999999987654 2
Q ss_pred CCChhHHHHHHHHHHHHHHh
Q 038067 423 NTGARGLRALLENILTEAMF 442 (510)
Q Consensus 423 ~~gaR~L~~~ie~~l~~~l~ 442 (510)
..|-|.-..+++-.-..+..
T Consensus 285 ~~s~Ra~i~l~raArA~Aal 304 (350)
T CHL00081 285 VDGLRGDIVTNRAAKALAAF 304 (350)
T ss_pred CCCChHHHHHHHHHHHHHHH
Confidence 34677776666654444444
No 109
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=1.4e-13 Score=136.36 Aligned_cols=97 Identities=30% Similarity=0.519 Sum_probs=82.3
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
+|..++||||||+|||++|+++|..++..|+.+.++.+.+ +|.|++ ...+++.++.+ +...+||||+||||.+.
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~-kyiGEs-aRlIRemf~yA----~~~~pciifmdeiDAig 238 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVD-KYIGES-ARLIRDMFRYA----REVIPCIIFMDEIDAIG 238 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhh-hhcccH-HHHHHHHHHHH----hhhCceEEeehhhhhhc
Confidence 7789999999999999999999999999999999999984 699997 78888888876 45677999999999998
Q ss_pred hhccCCCCCCCchhhHHHHHHHHhh
Q 038067 242 KAESRNNGRDVSGEGVQQALLKMLE 266 (510)
Q Consensus 242 ~~~~~~~~~~~~~~~v~~~LL~~le 266 (510)
..+...++ ++.+.||..|..+++
T Consensus 239 GRr~se~T--s~dreiqrTLMeLln 261 (388)
T KOG0651|consen 239 GRRFSEGT--SSDREIQRTLMELLN 261 (388)
T ss_pred cEEecccc--chhHHHHHHHHHHHH
Confidence 76643322 234579999999987
No 110
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=1.2e-13 Score=144.56 Aligned_cols=203 Identities=27% Similarity=0.358 Sum_probs=143.8
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCC-CeEEEeccccccccccccchhhHHHHHHHhhchhHHH----hcCcEEEEcc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNV-PFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEA----AQRGIVYIDE 236 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~-p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~----~~~~Vl~iDE 236 (510)
.-+++|||||||||||.+||.|.+.|+. +--.++..++-. .|+|++ +..++++|.++..+.+. ..-.||++||
T Consensus 255 HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~-KYVGeS-E~NvR~LFaDAEeE~r~~g~~SgLHIIIFDE 332 (744)
T KOG0741|consen 255 HVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILN-KYVGES-EENVRKLFADAEEEQRRLGANSGLHIIIFDE 332 (744)
T ss_pred ceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHH-Hhhccc-HHHHHHHHHhHHHHHHhhCccCCceEEEehh
Confidence 4578999999999999999999999964 556778777764 499998 77899999988655443 2236999999
Q ss_pred hhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhccc
Q 038067 237 VDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQD 316 (510)
Q Consensus 237 idkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~ 316 (510)
||.+++.+....+..--++.|.+.||.-|||-. -..|+++|-.+|..+|-+
T Consensus 333 iDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVe---------------------qLNNILVIGMTNR~DlID-------- 383 (744)
T KOG0741|consen 333 IDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVE---------------------QLNNILVIGMTNRKDLID-------- 383 (744)
T ss_pred hHHHHHhcCCCCCCCCccHHHHHHHHHhcccHH---------------------hhhcEEEEeccCchhhHH--------
Confidence 999998887666655556789999999998621 235777776666332210
Q ss_pred CCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHHH
Q 038067 317 SSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKK 396 (510)
Q Consensus 317 ~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~ 396 (510)
..-++| +|+.+.+.+.-++++-..+|++.+-..+
T Consensus 384 -------------------------------------EALLRP---GRlEVqmEIsLPDE~gRlQIl~IHT~rM------ 417 (744)
T KOG0741|consen 384 -------------------------------------EALLRP---GRLEVQMEISLPDEKGRLQILKIHTKRM------ 417 (744)
T ss_pred -------------------------------------HHhcCC---CceEEEEEEeCCCccCceEEEEhhhhhh------
Confidence 011555 7998888888888888888887543222
Q ss_pred HHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHHhcCcCC
Q 038067 397 MFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPET 447 (510)
Q Consensus 397 ~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~~~~~~ 447 (510)
..++ ..-++--++.||.. ++++..-+|..++...-.-++.+....
T Consensus 418 --re~~--~l~~dVdl~elA~l--TKNfSGAEleglVksA~S~A~nR~vk~ 462 (744)
T KOG0741|consen 418 --RENN--KLSADVDLKELAAL--TKNFSGAELEGLVKSAQSFAMNRHVKA 462 (744)
T ss_pred --hhcC--CCCCCcCHHHHHHH--hcCCchhHHHHHHHHHHHHHHHhhhcc
Confidence 2111 11122345566653 467777788888888888888766544
No 111
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=5.5e-13 Score=146.32 Aligned_cols=164 Identities=23% Similarity=0.313 Sum_probs=110.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhCC-------C-------------------eEEEeccccccccccccchhhHHHHHH
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVNV-------P-------------------FTITDATALTQAGYVGEDAESVLYKLL 217 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~~-------p-------------------~~~~~~s~l~~~gy~G~~~~~~l~~l~ 217 (510)
+.+||+||+|||||++|+++|+.++. | ++.+|++.. .| -..++.+.
T Consensus 36 ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvieidaas~-----~g---vd~iRel~ 107 (584)
T PRK14952 36 HAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVELDAASH-----GG---VDDTRELR 107 (584)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEEeccccc-----cC---HHHHHHHH
Confidence 34799999999999999999998852 1 111221110 01 12234443
Q ss_pred HhhchhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCcee
Q 038067 218 AAADFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILF 297 (510)
Q Consensus 218 ~~~~~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilf 297 (510)
....+.-..+...|++|||+|.|... .+++||+.||. ...+++|
T Consensus 108 ~~~~~~P~~~~~KVvIIDEah~Lt~~-------------A~NALLK~LEE-----------------------pp~~~~f 151 (584)
T PRK14952 108 DRAFYAPAQSRYRIFIVDEAHMVTTA-------------GFNALLKIVEE-----------------------PPEHLIF 151 (584)
T ss_pred HHHHhhhhcCCceEEEEECCCcCCHH-------------HHHHHHHHHhc-----------------------CCCCeEE
Confidence 33322222356679999999998765 69999999983 2245667
Q ss_pred ecCCCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHH
Q 038067 298 ICGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNED 377 (510)
Q Consensus 298 I~tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~e 377 (510)
|++++.. ..+.+.+++|.. .+.|.+++.+
T Consensus 152 IL~tte~--------------------------------------------------~kll~TI~SRc~-~~~F~~l~~~ 180 (584)
T PRK14952 152 IFATTEP--------------------------------------------------EKVLPTIRSRTH-HYPFRLLPPR 180 (584)
T ss_pred EEEeCCh--------------------------------------------------HhhHHHHHHhce-EEEeeCCCHH
Confidence 7655411 125678889964 5699999999
Q ss_pred HHHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHH
Q 038067 378 QLVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILT 438 (510)
Q Consensus 378 el~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~ 438 (510)
++.+.+.. +. ...+ +.++++++..|++.+ +++.|.+.+.++.++.
T Consensus 181 ~i~~~L~~----i~-------~~eg--i~i~~~al~~Ia~~s---~GdlR~aln~Ldql~~ 225 (584)
T PRK14952 181 TMRALIAR----IC-------EQEG--VVVDDAVYPLVIRAG---GGSPRDTLSVLDQLLA 225 (584)
T ss_pred HHHHHHHH----HH-------HHcC--CCCCHHHHHHHHHHc---CCCHHHHHHHHHHHHh
Confidence 98877753 11 2233 567999999999876 5668999999998763
No 112
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.47 E-value=4.6e-13 Score=144.11 Aligned_cols=201 Identities=18% Similarity=0.259 Sum_probs=134.3
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccccc----cccccchhhHHHHHHHhhchhHHHhcCcEEEE
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALTQA----GYVGEDAESVLYKLLAAADFDVEAAQRGIVYI 234 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~~~----gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~i 234 (510)
...++++.|++||||+++|+++++.. +.||+.+||..+.+. ..+|+. .+.+........+.+..+.+|+|||
T Consensus 156 ~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~-~~~~~~~~~~~~g~~~~a~~gtl~l 234 (463)
T TIGR01818 156 SDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHE-KGAFTGANTRRQGRFEQADGGTLFL 234 (463)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCC-CCCCCCcccCCCCcEEECCCCeEEE
Confidence 45679999999999999999999886 469999999987532 122322 1111111111122234567899999
Q ss_pred cchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhc
Q 038067 235 DEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERR 314 (510)
Q Consensus 235 DEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~ 314 (510)
|||+.++.. +|..|+++++.+.+. ..|+.. ....++-+|++++. ++++.+.
T Consensus 235 ~ei~~l~~~-------------~q~~ll~~l~~~~~~----~~~~~~--------~~~~~~rii~~~~~-~l~~~~~--- 285 (463)
T TIGR01818 235 DEIGDMPLD-------------AQTRLLRVLADGEFY----RVGGRT--------PIKVDVRIVAATHQ-NLEALVR--- 285 (463)
T ss_pred EchhhCCHH-------------HHHHHHHHHhcCcEE----ECCCCc--------eeeeeeEEEEeCCC-CHHHHHH---
Confidence 999999876 799999999854443 112111 11234556666651 2222221
Q ss_pred ccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCc-eEecCCCC--HHHHHHHHhchhHHHH
Q 038067 315 QDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPI-LVSLSALN--EDQLVQVLMEPKNALG 391 (510)
Q Consensus 315 ~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~-iv~f~~Ls--~eel~~Il~~~~~~l~ 391 (510)
...|+++|+.|+.. .|.++||. .+|+..++...+
T Consensus 286 ---------------------------------------~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l---- 322 (463)
T TIGR01818 286 ---------------------------------------QGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFL---- 322 (463)
T ss_pred ---------------------------------------cCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHH----
Confidence 12478899999986 68999999 688888887544
Q ss_pred HHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHH
Q 038067 392 RQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTE 439 (510)
Q Consensus 392 ~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~ 439 (510)
+++.... ......+++++++.|.. |.|.++.|+|++++++.+..
T Consensus 323 ~~~~~~~--~~~~~~~~~~a~~~L~~--~~wpgNvreL~~~~~~~~~~ 366 (463)
T TIGR01818 323 ALAAREL--DVEPKLLDPEALERLKQ--LRWPGNVRQLENLCRWLTVM 366 (463)
T ss_pred HHHHHHh--CCCCCCcCHHHHHHHHh--CCCCChHHHHHHHHHHHHHh
Confidence 3333221 11223689999999998 56777899999999998764
No 113
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.47 E-value=7.2e-13 Score=147.87 Aligned_cols=197 Identities=23% Similarity=0.285 Sum_probs=117.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHHh-----------------------------------CCCeEEEecccccccccccc-
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIV-----------------------------------NVPFTITDATALTQAGYVGE- 207 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l-----------------------------------~~p~~~~~~s~l~~~gy~G~- 207 (510)
.++||.||+|||||++|++|++.+ ..||+.+.++... ...+|.
T Consensus 26 g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~-~~l~G~~ 104 (633)
T TIGR02442 26 GGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFVNLPLGATE-DRVVGSL 104 (633)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccccCCCCeeeCCCCCcH-HHcCCcc
Confidence 579999999999999999999998 2466665544322 123332
Q ss_pred chhhHHHH-HHHhhchhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCC
Q 038067 208 DAESVLYK-LLAAADFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGD 286 (510)
Q Consensus 208 ~~~~~l~~-l~~~~~~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~ 286 (510)
+....+.. -....++.+..+.+||||||||+++.+. +|+.|+++|+.+.+.+. ..|...
T Consensus 105 d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~-------------~q~~Ll~~le~g~~~v~--r~g~~~----- 164 (633)
T TIGR02442 105 DIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDH-------------LVDVLLDAAAMGVNRVE--REGLSV----- 164 (633)
T ss_pred cHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHH-------------HHHHHHHHHhcCCEEEE--ECCcee-----
Confidence 11111100 0011133445678899999999999876 89999999996655443 333221
Q ss_pred cEEEEcCCceeecCCCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccC
Q 038067 287 NIPIDTKDILFICGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFP 366 (510)
Q Consensus 287 ~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~ 366 (510)
....++++|+|.|.. ...++++|+.||+
T Consensus 165 ---~~~~~~~lIat~np~-------------------------------------------------eg~l~~~L~dR~~ 192 (633)
T TIGR02442 165 ---SHPARFVLIGTMNPE-------------------------------------------------EGDLRPQLLDRFG 192 (633)
T ss_pred ---eecCCeEEEEecCCC-------------------------------------------------CCCCCHHHHhhcc
Confidence 223566667665511 0127789999999
Q ss_pred ceEecCCCC-HHHHHHHHhchhH------HHHHHH----------HHHHhcCCceeeeCHHHHHHHHHhhCCCCC-ChhH
Q 038067 367 ILVSLSALN-EDQLVQVLMEPKN------ALGRQY----------KKMFSMNNVKLHFTDDALRLIAKKAMAKNT-GARG 428 (510)
Q Consensus 367 ~iv~f~~Ls-~eel~~Il~~~~~------~l~~~~----------~~~~~~~~~~l~is~~al~~La~~~~~~~~-gaR~ 428 (510)
..|.+.++. .++..+|+...+. .+...| .......--.+.++++++++|+..+...+. |.|.
T Consensus 193 l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra 272 (633)
T TIGR02442 193 LCVDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVDGHRA 272 (633)
T ss_pred eEEEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccH
Confidence 888888775 4555666654221 000011 000111122466789999998887655444 4555
Q ss_pred HHHHH
Q 038067 429 LRALL 433 (510)
Q Consensus 429 L~~~i 433 (510)
...++
T Consensus 273 ~i~~~ 277 (633)
T TIGR02442 273 DIVMA 277 (633)
T ss_pred HHHHH
Confidence 44433
No 114
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.47 E-value=4.8e-13 Score=137.78 Aligned_cols=203 Identities=22% Similarity=0.286 Sum_probs=117.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhC-------CCe--EEEecc-cc----------------------ccccccccchhh
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVN-------VPF--TITDAT-AL----------------------TQAGYVGEDAES 211 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~-------~p~--~~~~~s-~l----------------------~~~gy~G~~~~~ 211 (510)
+|+||.||||||||++|+++++.+. .|+ ..+.+. +. ++...+|.-
T Consensus 30 ~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~--- 106 (334)
T PRK13407 30 GGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGAL--- 106 (334)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCCcccccCCccccCCCCCCcceeecch---
Confidence 6899999999999999999999982 211 111100 00 000112210
Q ss_pred HHHHHHH-----hhchhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCC
Q 038067 212 VLYKLLA-----AADFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGD 286 (510)
Q Consensus 212 ~l~~l~~-----~~~~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~ 286 (510)
.+...+. -.++.+..+.+|+||||||+.+.+. +|+.|+++|+.+.+++. ..|....
T Consensus 107 d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~-------------~q~~Lle~mee~~v~v~--r~G~~~~---- 167 (334)
T PRK13407 107 DIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDH-------------IVDLLLDVAQSGENVVE--REGLSIR---- 167 (334)
T ss_pred hhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHH-------------HHHHHHHHHHcCCeEEE--ECCeEEe----
Confidence 0111111 1123344577899999999998765 89999999997665543 3332211
Q ss_pred cEEEEcCCceeecCCCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccC
Q 038067 287 NIPIDTKDILFICGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFP 366 (510)
Q Consensus 287 ~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~ 366 (510)
...++++|+|.|.. ...+.++++.||.
T Consensus 168 ----~p~rfiviAt~NP~-------------------------------------------------e~~l~~aLldRF~ 194 (334)
T PRK13407 168 ----HPARFVLVGSGNPE-------------------------------------------------EGELRPQLLDRFG 194 (334)
T ss_pred ----cCCCEEEEecCCcc-------------------------------------------------cCCCCHHHHhhcc
Confidence 22345555555511 1127889999999
Q ss_pred ceEecCCCCH-HHHHHHHhchhH------HHH-----------HHHHHHHhcCCceeeeCHHHHHHHHHhhCCCC-CChh
Q 038067 367 ILVSLSALNE-DQLVQVLMEPKN------ALG-----------RQYKKMFSMNNVKLHFTDDALRLIAKKAMAKN-TGAR 427 (510)
Q Consensus 367 ~iv~f~~Ls~-eel~~Il~~~~~------~l~-----------~~~~~~~~~~~~~l~is~~al~~La~~~~~~~-~gaR 427 (510)
..|.+.+... ++..+|+..... .+. .+... ....--.+.+++++++++++.+..-. .|.|
T Consensus 195 ~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~R 273 (334)
T PRK13407 195 LSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQLRGRILG-ARARLPQLKTPNTVLHDCAALCIALGSDGLR 273 (334)
T ss_pred eEEEcCCCCcHHHHHHHHHHhhcccccchhhhccccccccCCHHHHHH-HHHhcCCcccCHHHHHHHHHHHHHHCCCCch
Confidence 8888887776 777777765221 010 11111 11112346789999999998765433 3666
Q ss_pred HHHHHHHHHHHHHHh
Q 038067 428 GLRALLENILTEAMF 442 (510)
Q Consensus 428 ~L~~~ie~~l~~~l~ 442 (510)
.-..++.-.-..++.
T Consensus 274 a~i~l~~aA~a~A~l 288 (334)
T PRK13407 274 GELTLLRAARALAAF 288 (334)
T ss_pred HHHHHHHHHHHHHHH
Confidence 665555543333333
No 115
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=7.1e-13 Score=145.30 Aligned_cols=164 Identities=23% Similarity=0.304 Sum_probs=107.7
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhCCC------------------------eEEEeccccccccccccchhhHHHHHHH
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVNVP------------------------FTITDATALTQAGYVGEDAESVLYKLLA 218 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~~p------------------------~~~~~~s~l~~~gy~G~~~~~~l~~l~~ 218 (510)
..++||+||+|||||++|+.+|+.++.. ++.++... ..+- ..++.+.+
T Consensus 38 ~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId~a~-----~~~I---d~iR~L~~ 109 (624)
T PRK14959 38 APAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDGAS-----NRGI---DDAKRLKE 109 (624)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEeccc-----ccCH---HHHHHHHH
Confidence 3579999999999999999999999532 22222211 0111 12233322
Q ss_pred hhchhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceee
Q 038067 219 AADFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFI 298 (510)
Q Consensus 219 ~~~~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI 298 (510)
...+.-......||+|||+|+|... .++.|++.||. ...+++||
T Consensus 110 ~~~~~p~~g~~kVIIIDEad~Lt~~-------------a~naLLk~LEE-----------------------P~~~~ifI 153 (624)
T PRK14959 110 AIGYAPMEGRYKVFIIDEAHMLTRE-------------AFNALLKTLEE-----------------------PPARVTFV 153 (624)
T ss_pred HHHhhhhcCCceEEEEEChHhCCHH-------------HHHHHHHHhhc-----------------------cCCCEEEE
Confidence 2211112345679999999999755 69999999983 11345566
Q ss_pred cCCCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHH
Q 038067 299 CGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQ 378 (510)
Q Consensus 299 ~tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~ee 378 (510)
++++.. ..+.+.+++|+.. +.|.+++.++
T Consensus 154 LaTt~~--------------------------------------------------~kll~TI~SRcq~-i~F~pLs~~e 182 (624)
T PRK14959 154 LATTEP--------------------------------------------------HKFPVTIVSRCQH-FTFTRLSEAG 182 (624)
T ss_pred EecCCh--------------------------------------------------hhhhHHHHhhhhc-cccCCCCHHH
Confidence 655410 1144567888865 5999999999
Q ss_pred HHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHH
Q 038067 379 LVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENIL 437 (510)
Q Consensus 379 l~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l 437 (510)
+.+++... . ... .+.+++++++.|++.+ .+++|.+.+.+++++
T Consensus 183 L~~~L~~i----l-------~~e--gi~id~eal~lIA~~s---~GdlR~Al~lLeqll 225 (624)
T PRK14959 183 LEAHLTKV----L-------GRE--GVDYDPAAVRLIARRA---AGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHHHHHH----H-------HHc--CCCCCHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 99888641 1 112 3558999999999986 566888888887643
No 116
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.47 E-value=9.6e-13 Score=149.52 Aligned_cols=186 Identities=26% Similarity=0.357 Sum_probs=124.0
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
++.++||+||||||||++|+++|+.++.+++.+++.++.. .|.|.. +..+..+|+.+ ....++||||||||.+.
T Consensus 211 ~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~-~~~g~~-~~~l~~lf~~a----~~~~p~il~iDEid~l~ 284 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMS-KYYGES-EERLREIFKEA----EENAPSIIFIDEIDAIA 284 (733)
T ss_pred CCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhc-ccccHH-HHHHHHHHHHH----HhcCCcEEEeehhhhhc
Confidence 5678999999999999999999999999999999988874 477765 55677777664 34567899999999998
Q ss_pred hhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCc
Q 038067 242 KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGF 321 (510)
Q Consensus 242 ~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf 321 (510)
..+... .......+++.|+.+|++-. ...++++|+++|..+
T Consensus 285 ~~r~~~--~~~~~~~~~~~Ll~~ld~l~---------------------~~~~vivI~atn~~~---------------- 325 (733)
T TIGR01243 285 PKREEV--TGEVEKRVVAQLLTLMDGLK---------------------GRGRVIVIGATNRPD---------------- 325 (733)
T ss_pred ccccCC--cchHHHHHHHHHHHHhhccc---------------------cCCCEEEEeecCChh----------------
Confidence 654211 11112358889999997410 112345555555110
Q ss_pred CcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhh--cccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHh
Q 038067 322 GAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFI--GRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFS 399 (510)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl--~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~ 399 (510)
.+.|.+. +||+..+.+..++.++..+|++...
T Consensus 326 ----------------------------------~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~------------ 359 (733)
T TIGR01243 326 ----------------------------------ALDPALRRPGRFDREIVIRVPDKRARKEILKVHT------------ 359 (733)
T ss_pred ----------------------------------hcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHh------------
Confidence 1345554 4899999999999999999987311
Q ss_pred cCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHHh
Q 038067 400 MNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMF 442 (510)
Q Consensus 400 ~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~ 442 (510)
.+..+ ..+..++.+++. ..++....+..+.......++.
T Consensus 360 -~~~~l-~~d~~l~~la~~--t~G~~gadl~~l~~~a~~~al~ 398 (733)
T TIGR01243 360 -RNMPL-AEDVDLDKLAEV--THGFVGADLAALAKEAAMAALR 398 (733)
T ss_pred -cCCCC-ccccCHHHHHHh--CCCCCHHHHHHHHHHHHHHHHH
Confidence 12222 123345666664 2344455666666655555444
No 117
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.45 E-value=7.3e-13 Score=144.36 Aligned_cols=216 Identities=19% Similarity=0.283 Sum_probs=123.2
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCC-CeEEE---eccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcch
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNV-PFTIT---DATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEV 237 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~-p~~~~---~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEi 237 (510)
...|+||+|+||||||++|+++++.+.. +|+.. ++..++.. .+ .+ ....-+...++.+..+.+|+++|||+
T Consensus 235 ~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~-~~-~~---~~~g~~~~~~G~l~~A~~Gil~iDEi 309 (509)
T smart00350 235 GDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAA-VT-RD---PETREFTLEGGALVLADNGVCCIDEF 309 (509)
T ss_pred ccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCcccc-ce-Ec---cCcceEEecCccEEecCCCEEEEech
Confidence 4459999999999999999999998853 23221 22222210 00 00 00000001122334567899999999
Q ss_pred hhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccC
Q 038067 238 DKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDS 317 (510)
Q Consensus 238 dkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~ 317 (510)
+++... .|..|+++||.+.+++. ..|..... ..++.+|+|.|..+
T Consensus 310 ~~l~~~-------------~q~~L~e~me~~~i~i~--k~G~~~~l--------~~~~~viAa~NP~~------------ 354 (509)
T smart00350 310 DKMDDS-------------DRTAIHEAMEQQTISIA--KAGITTTL--------NARCSVLAAANPIG------------ 354 (509)
T ss_pred hhCCHH-------------HHHHHHHHHhcCEEEEE--eCCEEEEe--------cCCcEEEEEeCCCC------------
Confidence 998765 79999999997777664 33432222 23455555555221
Q ss_pred CCC-cCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceE-ecCCCCHHHHHHHHhchhH-------
Q 038067 318 SIG-FGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILV-SLSALNEDQLVQVLMEPKN------- 388 (510)
Q Consensus 318 ~~g-f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv-~f~~Ls~eel~~Il~~~~~------- 388 (510)
| |.. ...+.+ +..++|++++|||.++ ..++++.+.-.+|++..++
T Consensus 355 --g~y~~----------------~~~~~~--------n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~ 408 (509)
T smart00350 355 --GRYDP----------------KLTPEE--------NIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHP 408 (509)
T ss_pred --cccCC----------------CcChhh--------ccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHHhhcccCc
Confidence 0 000 000111 1248999999999874 4466777766666654221
Q ss_pred ------------HHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCC-------------CCCChhHHHHHHHHHHHHHHhc
Q 038067 389 ------------ALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMA-------------KNTGARGLRALLENILTEAMFE 443 (510)
Q Consensus 389 ------------~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~-------------~~~gaR~L~~~ie~~l~~~l~~ 443 (510)
..++.|.... ...+...+++++.++|.+.... ....+|.|..+++- ..+.+.
T Consensus 409 ~~~~~~~~~~~~~~l~~yi~~a-r~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRl--a~A~A~ 485 (509)
T smart00350 409 EPDEADEVPISQEFLRKYIAYA-REKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRL--SEAHAK 485 (509)
T ss_pred cccccccccCCHHHHHHHHHHH-HhcCCCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHH--HHHHHH
Confidence 1223333321 1224456899999988775321 12356888888874 344444
Q ss_pred CcC
Q 038067 444 IPE 446 (510)
Q Consensus 444 ~~~ 446 (510)
+..
T Consensus 486 l~~ 488 (509)
T smart00350 486 MRL 488 (509)
T ss_pred HcC
Confidence 443
No 118
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.45 E-value=6.1e-13 Score=137.20 Aligned_cols=205 Identities=20% Similarity=0.293 Sum_probs=119.5
Q ss_pred CceEEEEccCCChHHHHHHHHHHHh-------CCCeE--------EE-eccc---c-------------c--cc-----c
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIV-------NVPFT--------IT-DATA---L-------------T--QA-----G 203 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l-------~~p~~--------~~-~~s~---l-------------~--~~-----g 203 (510)
..+++|.|++|+|||+++++++..+ +.|+- .+ +|.. . . .. .
T Consensus 25 ~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~ 104 (337)
T TIGR02030 25 IGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDR 104 (337)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhhhcccccccccCCCCcCCCCCCCcccc
Confidence 4689999999999999999999888 22221 00 0000 0 0 00 1
Q ss_pred ccccchhhHHHHHHHh-----hchhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCC
Q 038067 204 YVGEDAESVLYKLLAA-----ADFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNG 278 (510)
Q Consensus 204 y~G~~~~~~l~~l~~~-----~~~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g 278 (510)
++|.- .+...++. .++.+.++.+|+||||||+++... +|+.|+++|+.+.+++. ..|
T Consensus 105 l~G~~---d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~-------------~Q~~Ll~~l~~g~~~v~--r~G 166 (337)
T TIGR02030 105 VCGTL---DIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDH-------------LVDVLLDVAASGWNVVE--REG 166 (337)
T ss_pred eecch---hHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHH-------------HHHHHHHHHHhCCeEEE--ECC
Confidence 12211 11111111 223455678899999999998765 89999999986554432 233
Q ss_pred CCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCc
Q 038067 279 PRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLI 358 (510)
Q Consensus 279 ~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~ 358 (510)
... -...++++|+|.|.. ...|+
T Consensus 167 ~~~--------~~~~r~iviat~np~-------------------------------------------------eg~l~ 189 (337)
T TIGR02030 167 ISI--------RHPARFVLVGSGNPE-------------------------------------------------EGELR 189 (337)
T ss_pred EEE--------EcCCCEEEEeccccc-------------------------------------------------cCCCC
Confidence 211 122355566655410 12388
Q ss_pred hhhhcccCceEecCCCCH-HHHHHHHhchhHH------HHHHH--------HHHH--hcCCceeeeCHHHHHHHHHhhCC
Q 038067 359 PEFIGRFPILVSLSALNE-DQLVQVLMEPKNA------LGRQY--------KKMF--SMNNVKLHFTDDALRLIAKKAMA 421 (510)
Q Consensus 359 Pefl~R~~~iv~f~~Ls~-eel~~Il~~~~~~------l~~~~--------~~~~--~~~~~~l~is~~al~~La~~~~~ 421 (510)
|+|+.||...+.+.+++. ++..+|++..... ....+ .+.. ...-..+.+++++++++++.+..
T Consensus 190 ~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~ 269 (337)
T TIGR02030 190 PQLLDRFGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAE 269 (337)
T ss_pred HHHHhhcceEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHH
Confidence 899999999999998876 7777888652110 10001 0000 11123467899999999987653
Q ss_pred CC-CChhHHHHHHHHHHHHHHh
Q 038067 422 KN-TGARGLRALLENILTEAMF 442 (510)
Q Consensus 422 ~~-~gaR~L~~~ie~~l~~~l~ 442 (510)
-. .|-|....++.-.-..+..
T Consensus 270 ~~~~s~Ra~i~l~raArA~Aal 291 (337)
T TIGR02030 270 LDVDGLRGELTLNRAAKALAAF 291 (337)
T ss_pred HCCCCCcHHHHHHHHHHHHHHH
Confidence 22 2567766666654444444
No 119
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.45 E-value=1.3e-12 Score=149.72 Aligned_cols=169 Identities=22% Similarity=0.302 Sum_probs=114.8
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh----------CCCeEEEeccccc-cccccccchhhHHHHHHHhhchhHHHhcCc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV----------NVPFTITDATALT-QAGYVGEDAESVLYKLLAAADFDVEAAQRG 230 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l----------~~p~~~~~~s~l~-~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~ 230 (510)
.+.|++|+||||||||++|+.+|+.+ +..++.++.+.+. ...|.|+- +..+..++.... ....+.
T Consensus 207 ~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~-e~~lk~ii~e~~---~~~~~~ 282 (852)
T TIGR03345 207 RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEF-ENRLKSVIDEVK---ASPQPI 282 (852)
T ss_pred CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHH-HHHHHHHHHHHH---hcCCCe
Confidence 44689999999999999999999876 2457778887765 23466653 556666665531 113568
Q ss_pred EEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHH
Q 038067 231 IVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTI 310 (510)
Q Consensus 231 Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i 310 (510)
|||||||+.+..+....+.. .+-+.|+.+|+.+ .+.+|.+++..+..+++
T Consensus 283 ILfIDEih~l~~~g~~~~~~-----d~~n~Lkp~l~~G-------------------------~l~~IgaTT~~e~~~~~ 332 (852)
T TIGR03345 283 ILFIDEAHTLIGAGGQAGQG-----DAANLLKPALARG-------------------------ELRTIAATTWAEYKKYF 332 (852)
T ss_pred EEEEeChHHhccCCCccccc-----cHHHHhhHHhhCC-------------------------CeEEEEecCHHHHhhhh
Confidence 99999999998764322222 2556788888632 23455555532221111
Q ss_pred HhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHH
Q 038067 311 SERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNAL 390 (510)
Q Consensus 311 ~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l 390 (510)
-..|+|.+||. +|.+.+++.++..+|+.. +
T Consensus 333 ---------------------------------------------~~d~AL~rRf~-~i~v~eps~~~~~~iL~~----~ 362 (852)
T TIGR03345 333 ---------------------------------------------EKDPALTRRFQ-VVKVEEPDEETAIRMLRG----L 362 (852)
T ss_pred ---------------------------------------------hccHHHHHhCe-EEEeCCCCHHHHHHHHHH----H
Confidence 16789999996 579999999999999863 3
Q ss_pred HHHHHHHHhcCCceeeeCHHHHHHHHHhh
Q 038067 391 GRQYKKMFSMNNVKLHFTDDALRLIAKKA 419 (510)
Q Consensus 391 ~~~~~~~~~~~~~~l~is~~al~~La~~~ 419 (510)
.+.|.. ...+.++++++..+++.+
T Consensus 363 ~~~~e~-----~~~v~i~d~al~~~~~ls 386 (852)
T TIGR03345 363 APVLEK-----HHGVLILDEAVVAAVELS 386 (852)
T ss_pred HHhhhh-----cCCCeeCHHHHHHHHHHc
Confidence 333332 234778999999988865
No 120
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=8.4e-13 Score=145.44 Aligned_cols=163 Identities=23% Similarity=0.329 Sum_probs=107.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhCCC-----------------------------eEEEeccccccccccccchhhHHH
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVNVP-----------------------------FTITDATALTQAGYVGEDAESVLY 214 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~~p-----------------------------~~~~~~s~l~~~gy~G~~~~~~l~ 214 (510)
+.+||+||+|||||++|+.+|+.++.. ++.+|+.. . .. -..++
T Consensus 39 ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D~~eldaas-----~--~~-Vd~iR 110 (618)
T PRK14951 39 HAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFVDYTELDAAS-----N--RG-VDEVQ 110 (618)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCCceeecCccc-----c--cC-HHHHH
Confidence 457999999999999999999998531 11111111 0 11 12344
Q ss_pred HHHHhhchhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCC
Q 038067 215 KLLAAADFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKD 294 (510)
Q Consensus 215 ~l~~~~~~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsn 294 (510)
+++....+.-......|++|||+|.|... .++.||+.||. ...+
T Consensus 111 eli~~~~~~p~~g~~KV~IIDEvh~Ls~~-------------a~NaLLKtLEE-----------------------PP~~ 154 (618)
T PRK14951 111 QLLEQAVYKPVQGRFKVFMIDEVHMLTNT-------------AFNAMLKTLEE-----------------------PPEY 154 (618)
T ss_pred HHHHHHHhCcccCCceEEEEEChhhCCHH-------------HHHHHHHhccc-----------------------CCCC
Confidence 55444322112234579999999999865 69999999983 1134
Q ss_pred ceeecCCCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCC
Q 038067 295 ILFICGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSAL 374 (510)
Q Consensus 295 ilfI~tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~L 374 (510)
+.||++++.. ..+.+.+++|+ .++.|.++
T Consensus 155 ~~fIL~Ttd~--------------------------------------------------~kil~TIlSRc-~~~~f~~L 183 (618)
T PRK14951 155 LKFVLATTDP--------------------------------------------------QKVPVTVLSRC-LQFNLRPM 183 (618)
T ss_pred eEEEEEECCc--------------------------------------------------hhhhHHHHHhc-eeeecCCC
Confidence 4566554410 11455688898 45699999
Q ss_pred CHHHHHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHH
Q 038067 375 NEDQLVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENIL 437 (510)
Q Consensus 375 s~eel~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l 437 (510)
+.+++.+.+... +...+ +.++++++++|++.+ .++.|.+.+++++.+
T Consensus 184 s~eei~~~L~~i-----------~~~eg--i~ie~~AL~~La~~s---~GslR~al~lLdq~i 230 (618)
T PRK14951 184 APETVLEHLTQV-----------LAAEN--VPAEPQALRLLARAA---RGSMRDALSLTDQAI 230 (618)
T ss_pred CHHHHHHHHHHH-----------HHHcC--CCCCHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 999988888641 12233 567999999999976 566888888776555
No 121
>PRK15115 response regulator GlrR; Provisional
Probab=99.45 E-value=4.6e-13 Score=143.46 Aligned_cols=199 Identities=20% Similarity=0.302 Sum_probs=132.1
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccccc----cccccchhhHHHHHHHhhchhHHHhcCcEEEE
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALTQA----GYVGEDAESVLYKLLAAADFDVEAAQRGIVYI 234 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~~~----gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~i 234 (510)
...+++++|++|||||++|+.+++.. +.||+.++|..+.+. ..+|+. .+.+........+.+..+.+|+|||
T Consensus 156 ~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~-~~~~~~~~~~~~g~~~~a~~gtl~l 234 (444)
T PRK15115 156 SDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHA-RGAFTGAVSNREGLFQAAEGGTLFL 234 (444)
T ss_pred CCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCC-cCCCCCCccCCCCcEEECCCCEEEE
Confidence 45679999999999999999999987 479999999987532 111221 0111111111122334567899999
Q ss_pred cchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhc
Q 038067 235 DEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERR 314 (510)
Q Consensus 235 DEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~ 314 (510)
|||+.|+.. .|..|+++++.+.+. ..|..+ ....++.+|+|++. ++.+.+.
T Consensus 235 ~~i~~l~~~-------------~q~~L~~~l~~~~~~----~~g~~~--------~~~~~~rii~~~~~-~l~~~~~--- 285 (444)
T PRK15115 235 DEIGDMPAP-------------LQVKLLRVLQERKVR----PLGSNR--------DIDIDVRIISATHR-DLPKAMA--- 285 (444)
T ss_pred EccccCCHH-------------HHHHHHHHHhhCCEE----eCCCCc--------eeeeeEEEEEeCCC-CHHHHHH---
Confidence 999999876 799999999855442 122211 12236677777662 2333322
Q ss_pred ccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCc-eEecCCCCH--HHHHHHHhchhHHHH
Q 038067 315 QDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPI-LVSLSALNE--DQLVQVLMEPKNALG 391 (510)
Q Consensus 315 ~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~-iv~f~~Ls~--eel~~Il~~~~~~l~ 391 (510)
+..|+++|..|+.. .|.++||.+ +|+..++... +
T Consensus 286 ---------------------------------------~~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~----l 322 (444)
T PRK15115 286 ---------------------------------------RGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHL----L 322 (444)
T ss_pred ---------------------------------------cCCccHHHHHhhceeeecCCChHhccccHHHHHHHH----H
Confidence 22478888889876 478888875 6777777653 3
Q ss_pred HHHHHHHhcCCce-eeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHH
Q 038067 392 RQYKKMFSMNNVK-LHFTDDALRLIAKKAMAKNTGARGLRALLENILT 438 (510)
Q Consensus 392 ~~~~~~~~~~~~~-l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~ 438 (510)
.++... .+.. ..+++++++.|.. |.|.++.|+|+++|++.+.
T Consensus 323 ~~~~~~---~~~~~~~~~~~a~~~L~~--~~WpgNvreL~~~i~~~~~ 365 (444)
T PRK15115 323 RQAAER---HKPFVRAFSTDAMKRLMT--ASWPGNVRQLVNVIEQCVA 365 (444)
T ss_pred HHHHHH---hCCCCCCcCHHHHHHHHh--CCCCChHHHHHHHHHHHHH
Confidence 333221 2222 3589999999998 5677789999999999775
No 122
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.44 E-value=1.8e-12 Score=137.78 Aligned_cols=232 Identities=17% Similarity=0.224 Sum_probs=137.2
Q ss_pred hHHHHhhhccccccchhhhhccchhhhhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhhcccccccccccCCccCCCCCCC
Q 038067 75 PKEICKGLDEFVIGQERAKKSHIFCILVDMLVYVIGACCAVYNHYKRIYHSSLQKELVSDHLYVDSILGSGVKSGNCNVE 154 (510)
Q Consensus 75 ~~el~~~L~~~ViGQ~~ak~~~~~~~~~~~~~~~~~l~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 154 (510)
...+.+.|.+.|+|++++++. +..++.
T Consensus 11 i~~l~~~l~~~i~gre~vI~l---------------ll~aal-------------------------------------- 37 (498)
T PRK13531 11 ISRLSSALEKGLYERSHAIRL---------------CLLAAL-------------------------------------- 37 (498)
T ss_pred HHHHHHHHhhhccCcHHHHHH---------------HHHHHc--------------------------------------
Confidence 456889999999999999998 555553
Q ss_pred cchhhhccCceEEEEccCCChHHHHHHHHHHHhCC--CeEEEeccccccccccccchhhHH--HHHHH-hhchhHHHhcC
Q 038067 155 NDEIVELEKSNVLLMGPTGSGKTLLAKTLARIVNV--PFTITDATALTQAGYVGEDAESVL--YKLLA-AADFDVEAAQR 229 (510)
Q Consensus 155 ~~~~~~~~~~~vLL~GPpGtGKT~lAr~lA~~l~~--p~~~~~~s~l~~~gy~G~~~~~~l--~~l~~-~~~~~~~~~~~ 229 (510)
...|+||+||||||||++|+++|+.++. +|....+.-.+....+|...-... ...+. ...+.+. ..
T Consensus 38 -------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~--~A 108 (498)
T PRK13531 38 -------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLP--EA 108 (498)
T ss_pred -------cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCccc--cc
Confidence 5679999999999999999999998743 555544432122223332100000 00010 0111111 12
Q ss_pred cEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHH
Q 038067 230 GIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKT 309 (510)
Q Consensus 230 ~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~ 309 (510)
.++|+|||.++++. +|+.||.+|+.+.+++ |+.+ ....-.+|++++| .|
T Consensus 109 ~lLfLDEI~rasp~-------------~QsaLLeam~Er~~t~-----g~~~--------~~lp~rfiv~ATN--~L--- 157 (498)
T PRK13531 109 EIVFLDEIWKAGPA-------------ILNTLLTAINERRFRN-----GAHE--------EKIPMRLLVTASN--EL--- 157 (498)
T ss_pred cEEeecccccCCHH-------------HHHHHHHHHHhCeEec-----CCeE--------EeCCCcEEEEECC--CC---
Confidence 39999999998776 8999999998777762 2211 2222233333334 10
Q ss_pred HHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCC-HHHHHHHHhchhH
Q 038067 310 ISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALN-EDQLVQVLMEPKN 388 (510)
Q Consensus 310 i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls-~eel~~Il~~~~~ 388 (510)
|+ ...+.++++.||-..+.+++++ .++..+|+.....
T Consensus 158 ---------------------------------------PE---~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~~~ 195 (498)
T PRK13531 158 ---------------------------------------PE---ADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQD 195 (498)
T ss_pred ---------------------------------------cc---cCCchHHhHhhEEEEEECCCCCchHHHHHHHHcccc
Confidence 00 1236778999997778999997 4666777753210
Q ss_pred H----------H-HHHHHHHHhcCCceeeeCHHHHHHHHHhhC-----C--CCCChhHHHHHHHHHHHHHHh
Q 038067 389 A----------L-GRQYKKMFSMNNVKLHFTDDALRLIAKKAM-----A--KNTGARGLRALLENILTEAMF 442 (510)
Q Consensus 389 ~----------l-~~~~~~~~~~~~~~l~is~~al~~La~~~~-----~--~~~gaR~L~~~ie~~l~~~l~ 442 (510)
. + ...+... ...-..+.+++.+.++|.+... . ...+.|....++.-.=..|+.
T Consensus 196 ~~~~~~~~~~vis~eel~~l-q~~v~~V~v~d~v~eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l 266 (498)
T PRK13531 196 ENDNPVPASLQITDEEYQQW-QKEIGKITLPDHVFELIFQLRQQLDALPNAPYVSDRRWKKAIRLLQASAFF 266 (498)
T ss_pred cccCCCcccCCCCHHHHHHH-HHHhcceeCCHHHHHHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHH
Confidence 0 0 0112111 1122356789999999887642 1 124567777766644433443
No 123
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.44 E-value=1.7e-12 Score=144.17 Aligned_cols=196 Identities=21% Similarity=0.323 Sum_probs=118.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh----------CCCeEEEecccccc------ccccccchhhHHH---HHHH----
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV----------NVPFTITDATALTQ------AGYVGEDAESVLY---KLLA---- 218 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l----------~~p~~~~~~s~l~~------~gy~G~~~~~~l~---~l~~---- 218 (510)
.+.+++|+||||||||++|+++++.. +.+|+.+++..+.. ..++|........ ..+.
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl 253 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGV 253 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCC
Confidence 34579999999999999999998766 35799999887631 0122211111000 0011
Q ss_pred --hhchhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCC-----cEEE-
Q 038067 219 --AADFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGD-----NIPI- 290 (510)
Q Consensus 219 --~~~~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~-----~i~i- 290 (510)
.....+..+++|+|||||++.|... .|+.|+++|+.+.+.+. .+........ ...+
T Consensus 254 ~~~~~g~v~~asgGvL~LDEi~~Ld~~-------------~Q~~Ll~~Le~~~v~~~---~~~~~~~~~~~~~~ik~~~~ 317 (615)
T TIGR02903 254 PEPKTGLVTDAHGGVLFIDEIGELDPL-------------LQNKLLKVLEDKRVEFS---SSYYDPDDPNVPKYIKKLFE 317 (615)
T ss_pred CchhcCchhhcCCCeEEEeccccCCHH-------------HHHHHHHHHhhCeEEee---cceeccCCcccchhhhhhcc
Confidence 1122345667899999999998766 79999999986655432 1100000000 0000
Q ss_pred --EcCCceeecCCCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCce
Q 038067 291 --DTKDILFICGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPIL 368 (510)
Q Consensus 291 --~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~i 368 (510)
...++++|++++.. + ..+.|+|++|+..
T Consensus 318 ~~~~~~~VLI~aTt~~--------------------------------------------~-----~~l~~aLrSR~~~- 347 (615)
T TIGR02903 318 EGAPADFVLIGATTRD--------------------------------------------P-----EEINPALRSRCAE- 347 (615)
T ss_pred cCccceEEEEEecccc--------------------------------------------c-----cccCHHHHhceeE-
Confidence 11234444433300 0 1256789999975
Q ss_pred EecCCCCHHHHHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHH
Q 038067 369 VSLSALNEDQLVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEA 440 (510)
Q Consensus 369 v~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~ 440 (510)
+.|.|++.+++..|++..+ . ...+.+++++++.|++++| .+|...+.++..+.-+
T Consensus 348 i~~~pls~edi~~Il~~~a----~---------~~~v~ls~eal~~L~~ys~----~gRraln~L~~~~~~~ 402 (615)
T TIGR02903 348 VFFEPLTPEDIALIVLNAA----E---------KINVHLAAGVEELIARYTI----EGRKAVNILADVYGYA 402 (615)
T ss_pred EEeCCCCHHHHHHHHHHHH----H---------HcCCCCCHHHHHHHHHCCC----cHHHHHHHHHHHHHHH
Confidence 5899999999999998522 1 1124579999999999653 3466667776665443
No 124
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.44 E-value=1.3e-12 Score=143.65 Aligned_cols=165 Identities=25% Similarity=0.365 Sum_probs=111.8
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhCC------------------------CeEEEeccccccccccccchhhHHHHHHH
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVNV------------------------PFTITDATALTQAGYVGEDAESVLYKLLA 218 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~~------------------------p~~~~~~s~l~~~gy~G~~~~~~l~~l~~ 218 (510)
++.+||+||+|||||++|+.+|+.++. .++.+|++. +.. -..++.+..
T Consensus 38 ~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~eidaas-------~~~-vd~ir~i~~ 109 (559)
T PRK05563 38 SHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIEIDAAS-------NNG-VDEIRDIRD 109 (559)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEEeeccc-------cCC-HHHHHHHHH
Confidence 356899999999999999999999842 222332211 011 123444444
Q ss_pred hhchhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceee
Q 038067 219 AADFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFI 298 (510)
Q Consensus 219 ~~~~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI 298 (510)
...+.-..+...|++|||+|.|... .+++||+.||. ...+++||
T Consensus 110 ~v~~~p~~~~~kViIIDE~~~Lt~~-------------a~naLLKtLEe-----------------------pp~~~ifI 153 (559)
T PRK05563 110 KVKYAPSEAKYKVYIIDEVHMLSTG-------------AFNALLKTLEE-----------------------PPAHVIFI 153 (559)
T ss_pred HHhhCcccCCeEEEEEECcccCCHH-------------HHHHHHHHhcC-----------------------CCCCeEEE
Confidence 4322222355679999999998754 69999999983 12346677
Q ss_pred cCCCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHH
Q 038067 299 CGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQ 378 (510)
Q Consensus 299 ~tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~ee 378 (510)
++++.. ..+.|.+++|+.. +.|.+++.++
T Consensus 154 latt~~--------------------------------------------------~ki~~tI~SRc~~-~~f~~~~~~e 182 (559)
T PRK05563 154 LATTEP--------------------------------------------------HKIPATILSRCQR-FDFKRISVED 182 (559)
T ss_pred EEeCCh--------------------------------------------------hhCcHHHHhHheE-EecCCCCHHH
Confidence 654410 1256788899965 5899999999
Q ss_pred HHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHH
Q 038067 379 LVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILT 438 (510)
Q Consensus 379 l~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~ 438 (510)
+.+.+... . ...+ +.++++++..|++.+ +++.|.+.+.++..+.
T Consensus 183 i~~~L~~i----~-------~~eg--i~i~~~al~~ia~~s---~G~~R~al~~Ldq~~~ 226 (559)
T PRK05563 183 IVERLKYI----L-------DKEG--IEYEDEALRLIARAA---EGGMRDALSILDQAIS 226 (559)
T ss_pred HHHHHHHH----H-------HHcC--CCCCHHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 88888641 1 1223 457899999999976 5678988888887654
No 125
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=2.1e-12 Score=140.05 Aligned_cols=164 Identities=25% Similarity=0.316 Sum_probs=107.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhCC--C---------------------eEEEeccccccccccccchhhHHHHHHHhh
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVNV--P---------------------FTITDATALTQAGYVGEDAESVLYKLLAAA 220 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~~--p---------------------~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~ 220 (510)
+.+||+||||||||++|+++|+.+.. + ++.++.+. ..+ -..++.+....
T Consensus 37 ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~~-----~~~---vd~iR~l~~~~ 108 (504)
T PRK14963 37 HAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDAAS-----NNS---VEDVRDLREKV 108 (504)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEecccc-----cCC---HHHHHHHHHHH
Confidence 45699999999999999999998842 1 22222211 011 12233332222
Q ss_pred chhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecC
Q 038067 221 DFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICG 300 (510)
Q Consensus 221 ~~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~t 300 (510)
...-......||+|||+|.+... .++.|++.|+. ...+++||++
T Consensus 109 ~~~p~~~~~kVVIIDEad~ls~~-------------a~naLLk~LEe-----------------------p~~~t~~Il~ 152 (504)
T PRK14963 109 LLAPLRGGRKVYILDEAHMMSKS-------------AFNALLKTLEE-----------------------PPEHVIFILA 152 (504)
T ss_pred hhccccCCCeEEEEECccccCHH-------------HHHHHHHHHHh-----------------------CCCCEEEEEE
Confidence 11111245679999999987644 69999999972 1234455554
Q ss_pred CCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHH
Q 038067 301 GAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLV 380 (510)
Q Consensus 301 g~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~ 380 (510)
++.. ..+.+.+.+|+. ++.|.+++.+++.
T Consensus 153 t~~~--------------------------------------------------~kl~~~I~SRc~-~~~f~~ls~~el~ 181 (504)
T PRK14963 153 TTEP--------------------------------------------------EKMPPTILSRTQ-HFRFRRLTEEEIA 181 (504)
T ss_pred cCCh--------------------------------------------------hhCChHHhcceE-EEEecCCCHHHHH
Confidence 4310 125667888886 5699999999998
Q ss_pred HHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHH
Q 038067 381 QVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILT 438 (510)
Q Consensus 381 ~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~ 438 (510)
+.+... +...+ +.++++++++|++.+ ++..|.+.+.+++++.
T Consensus 182 ~~L~~i-----------~~~eg--i~i~~~Al~~ia~~s---~GdlR~aln~Lekl~~ 223 (504)
T PRK14963 182 GKLRRL-----------LEAEG--REAEPEALQLVARLA---DGAMRDAESLLERLLA 223 (504)
T ss_pred HHHHHH-----------HHHcC--CCCCHHHHHHHHHHc---CCCHHHHHHHHHHHHh
Confidence 888642 12234 457999999999986 6678999999998753
No 126
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=1.5e-12 Score=142.18 Aligned_cols=172 Identities=23% Similarity=0.329 Sum_probs=108.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhCCC-------eEEEe-cccccc---ccccc-----cchhhHHHHHHHhhchhHHHh
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVNVP-------FTITD-ATALTQ---AGYVG-----EDAESVLYKLLAAADFDVEAA 227 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~~p-------~~~~~-~s~l~~---~gy~G-----~~~~~~l~~l~~~~~~~~~~~ 227 (510)
+.+||+||+|+|||++|+.+|+.++.. .-.++ |..+.. ..++. ...-..++.++....+.-...
T Consensus 39 ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~ 118 (527)
T PRK14969 39 HAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRG 118 (527)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccC
Confidence 457999999999999999999999531 11110 000000 00000 001122444444332211234
Q ss_pred cCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchH
Q 038067 228 QRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLE 307 (510)
Q Consensus 228 ~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~ 307 (510)
...|++|||+|++... .++.||+.||. ...+++||++++..
T Consensus 119 ~~kVvIIDEad~ls~~-------------a~naLLK~LEe-----------------------pp~~~~fIL~t~d~--- 159 (527)
T PRK14969 119 RFKVYIIDEVHMLSKS-------------AFNAMLKTLEE-----------------------PPEHVKFILATTDP--- 159 (527)
T ss_pred CceEEEEcCcccCCHH-------------HHHHHHHHHhC-----------------------CCCCEEEEEEeCCh---
Confidence 5579999999998764 69999999983 11345566654410
Q ss_pred HHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchh
Q 038067 308 KTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPK 387 (510)
Q Consensus 308 ~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~ 387 (510)
..+.+.+++|+- ++.|.+++.+++.+.+...
T Consensus 160 -----------------------------------------------~kil~tI~SRc~-~~~f~~l~~~~i~~~L~~i- 190 (527)
T PRK14969 160 -----------------------------------------------QKIPVTVLSRCL-QFNLKQMPPPLIVSHLQHI- 190 (527)
T ss_pred -----------------------------------------------hhCchhHHHHHH-HHhcCCCCHHHHHHHHHHH-
Confidence 124556888984 4699999999988777531
Q ss_pred HHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHH
Q 038067 388 NALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILT 438 (510)
Q Consensus 388 ~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~ 438 (510)
+..++ +.+++++++.|++.+ +++.|...+.++..+.
T Consensus 191 ----------l~~eg--i~~~~~al~~la~~s---~Gslr~al~lldqai~ 226 (527)
T PRK14969 191 ----------LEQEN--IPFDATALQLLARAA---AGSMRDALSLLDQAIA 226 (527)
T ss_pred ----------HHHcC--CCCCHHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 12234 557999999999985 5568888888887653
No 127
>PHA02244 ATPase-like protein
Probab=99.41 E-value=9.5e-12 Score=128.32 Aligned_cols=184 Identities=16% Similarity=0.233 Sum_probs=109.3
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccc--cccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATA--LTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDK 239 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~--l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidk 239 (510)
.+.++||+||||||||++|+++|..++.||+.++... +.-.|++... +. +...+.......+++|+||||+.
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~--g~----~~dgpLl~A~~~GgvLiLDEId~ 191 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDAN--GK----FHETPFYEAFKKGGLFFIDEIDA 191 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhccccccc--cc----ccchHHHHHhhcCCEEEEeCcCc
Confidence 4568999999999999999999999999999988431 1111332211 11 11112222235789999999999
Q ss_pred hhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCC
Q 038067 240 IVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSI 319 (510)
Q Consensus 240 l~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~ 319 (510)
+.+. ++..|..+++.+.+.++ ++.. ....++.+|+|+|..+ -
T Consensus 192 a~p~-------------vq~~L~~lLd~r~l~l~----g~~i--------~~h~~FRlIATsN~~~-------------~ 233 (383)
T PHA02244 192 SIPE-------------ALIIINSAIANKFFDFA----DERV--------TAHEDFRVISAGNTLG-------------K 233 (383)
T ss_pred CCHH-------------HHHHHHHHhccCeEEec----CcEE--------ecCCCEEEEEeeCCCc-------------c
Confidence 8765 89999999987766543 2222 2234555666665211 0
Q ss_pred CcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHh--chhHHHHHHHHHH
Q 038067 320 GFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLM--EPKNALGRQYKKM 397 (510)
Q Consensus 320 gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~--~~~~~l~~~~~~~ 397 (510)
|+... +. -...+.+++++||-. |.|..+++-|. .|+. ..+-.+....+..
T Consensus 234 G~~~~-------------------y~-------G~k~L~~AllDRFv~-I~~dyp~~~E~-~i~~~~~~lv~~a~~lR~~ 285 (383)
T PHA02244 234 GADHI-------------------YV-------ARNKIDGATLDRFAP-IEFDYDEKIEH-LISNGDEDLVNFVALLRHE 285 (383)
T ss_pred Ccccc-------------------cC-------CCcccCHHHHhhcEE-eeCCCCcHHHH-HHhhhHHHHHHHHHHHHHH
Confidence 11000 00 013478899999964 68888774333 2332 2222333334443
Q ss_pred HhcCCceeeeCHHHHHHHHH
Q 038067 398 FSMNNVKLHFTDDALRLIAK 417 (510)
Q Consensus 398 ~~~~~~~l~is~~al~~La~ 417 (510)
+...+....++..++-+.++
T Consensus 286 ~~~~~l~~~~StR~li~~a~ 305 (383)
T PHA02244 286 MAEKGLDHVFSMRAIIHGKK 305 (383)
T ss_pred HhcCCCCccccHHHHHHHHH
Confidence 44456666666666655555
No 128
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.41 E-value=3.5e-12 Score=128.52 Aligned_cols=195 Identities=22% Similarity=0.349 Sum_probs=130.5
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEecccccc----ccccccchhhHHHHHHHhhchhHHHhcCcEEEE
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALTQ----AGYVGEDAESVLYKLLAAADFDVEAAQRGIVYI 234 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~~----~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~i 234 (510)
-...+|+.|.+||||..+||+-+... ..||+.++|..+-+ +..+|+.++ -+...+-++.+++|.+|+
T Consensus 226 lDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsElFG~apg------~~gk~GffE~AngGTVlL 299 (511)
T COG3283 226 LDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESELFGHAPG------DEGKKGFFEQANGGTVLL 299 (511)
T ss_pred cCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhHHHHhcCCCC------CCCccchhhhccCCeEEe
Confidence 33579999999999999999988777 67999999998753 223343321 011223456678999999
Q ss_pred cchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhc
Q 038067 235 DEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERR 314 (510)
Q Consensus 235 DEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~ 314 (510)
|||..|++. .|..||+.|.++.++ +.|+-.. +. -++-+||++- .+|.+.+.+..
T Consensus 300 DeIgEmSp~-------------lQaKLLRFL~DGtFR----RVGee~E-----v~---vdVRVIcatq-~nL~~lv~~g~ 353 (511)
T COG3283 300 DEIGEMSPR-------------LQAKLLRFLNDGTFR----RVGEDHE-----VH---VDVRVICATQ-VNLVELVQKGK 353 (511)
T ss_pred ehhhhcCHH-------------HHHHHHHHhcCCcee----ecCCcce-----EE---EEEEEEeccc-ccHHHHHhcCc
Confidence 999999887 899999999866665 3443322 22 2455666544 34555544322
Q ss_pred ccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCce-EecCCCCH--HHHHHHHhchhHHHH
Q 038067 315 QDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPIL-VSLSALNE--DQLVQVLMEPKNALG 391 (510)
Q Consensus 315 ~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~i-v~f~~Ls~--eel~~Il~~~~~~l~ 391 (510)
|+..+..|+.+. +.++||.+ +++.-+++.+ +
T Consensus 354 ------------------------------------------fReDLfyRLNVLtl~~PpLRer~~di~pL~e~F----v 387 (511)
T COG3283 354 ------------------------------------------FREDLFYRLNVLTLNLPPLRERPQDIMPLAELF----V 387 (511)
T ss_pred ------------------------------------------hHHHHHHHhheeeecCCccccCcccchHHHHHH----H
Confidence 566667777663 66667654 4555555543 3
Q ss_pred HHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHH
Q 038067 392 RQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILT 438 (510)
Q Consensus 392 ~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~ 438 (510)
.++.+.+ .--..+++++.+.+|.+ |.|.++.|+|.+.|=+.+.
T Consensus 388 ~q~s~el--g~p~pkl~~~~~~~L~~--y~WpGNVRqL~N~iyRA~s 430 (511)
T COG3283 388 QQFSDEL--GVPRPKLAADLLTVLTR--YAWPGNVRQLKNAIYRALT 430 (511)
T ss_pred HHHHHHh--CCCCCccCHHHHHHHHH--cCCCccHHHHHHHHHHHHH
Confidence 3333322 22345789999999988 5677789999998877654
No 129
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=2.2e-12 Score=142.36 Aligned_cols=165 Identities=23% Similarity=0.304 Sum_probs=110.4
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhCCC------------------------eEEEeccccccccccccchhhHHHHHHH
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVNVP------------------------FTITDATALTQAGYVGEDAESVLYKLLA 218 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~~p------------------------~~~~~~s~l~~~gy~G~~~~~~l~~l~~ 218 (510)
++.+||+||+|+|||++|+.+|+.++.+ ++.+++.. ..| -..++.+..
T Consensus 38 ~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid~~s-----~~~---v~~ir~l~~ 109 (576)
T PRK14965 38 AHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEIDGAS-----NTG---VDDIRELRE 109 (576)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeeeeccC-----ccC---HHHHHHHHH
Confidence 3568999999999999999999998531 22222211 011 112344443
Q ss_pred hhchhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceee
Q 038067 219 AADFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFI 298 (510)
Q Consensus 219 ~~~~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI 298 (510)
...+.-..+...|++|||+|.|... .+++||+.||. ...+++||
T Consensus 110 ~~~~~p~~~~~KVvIIdev~~Lt~~-------------a~naLLk~LEe-----------------------pp~~~~fI 153 (576)
T PRK14965 110 NVKYLPSRSRYKIFIIDEVHMLSTN-------------AFNALLKTLEE-----------------------PPPHVKFI 153 (576)
T ss_pred HHHhccccCCceEEEEEChhhCCHH-------------HHHHHHHHHHc-----------------------CCCCeEEE
Confidence 3322112345679999999998764 69999999983 12355666
Q ss_pred cCCCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHH
Q 038067 299 CGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQ 378 (510)
Q Consensus 299 ~tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~ee 378 (510)
++++.. ..+.+.+++|+.. +.|.+++.++
T Consensus 154 l~t~~~--------------------------------------------------~kl~~tI~SRc~~-~~f~~l~~~~ 182 (576)
T PRK14965 154 FATTEP--------------------------------------------------HKVPITILSRCQR-FDFRRIPLQK 182 (576)
T ss_pred EEeCCh--------------------------------------------------hhhhHHHHHhhhh-hhcCCCCHHH
Confidence 655410 1255678889864 5999999998
Q ss_pred HHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHH
Q 038067 379 LVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILT 438 (510)
Q Consensus 379 l~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~ 438 (510)
+...+.. +. ...+ +.++++++..|++.+ +++.|.+.+.+++++.
T Consensus 183 i~~~L~~----i~-------~~eg--i~i~~~al~~la~~a---~G~lr~al~~Ldqlia 226 (576)
T PRK14965 183 IVDRLRY----IA-------DQEG--ISISDAALALVARKG---DGSMRDSLSTLDQVLA 226 (576)
T ss_pred HHHHHHH----HH-------HHhC--CCCCHHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 8877753 11 2233 558999999999986 5678888888887653
No 130
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.41 E-value=3.5e-12 Score=139.24 Aligned_cols=164 Identities=23% Similarity=0.324 Sum_probs=108.3
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhCC-------C-----------------eEEEeccccccccccccchhhHHHHHHH
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVNV-------P-----------------FTITDATALTQAGYVGEDAESVLYKLLA 218 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~~-------p-----------------~~~~~~s~l~~~gy~G~~~~~~l~~l~~ 218 (510)
++.+||+||+|+|||++|+.+|+.+.. | ++.+++.. ..| -..++.+..
T Consensus 38 ~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieIdaas-----~ig---Vd~IReIi~ 109 (605)
T PRK05896 38 THAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELDAAS-----NNG---VDEIRNIID 109 (605)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEecccc-----ccC---HHHHHHHHH
Confidence 356999999999999999999999842 1 11121111 011 122444443
Q ss_pred hhchhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceee
Q 038067 219 AADFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFI 298 (510)
Q Consensus 219 ~~~~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI 298 (510)
.....-..+...|++|||+|.|... .+++|++.||. ...+++||
T Consensus 110 ~~~~~P~~~~~KVIIIDEad~Lt~~-------------A~NaLLKtLEE-----------------------Pp~~tvfI 153 (605)
T PRK05896 110 NINYLPTTFKYKVYIIDEAHMLSTS-------------AWNALLKTLEE-----------------------PPKHVVFI 153 (605)
T ss_pred HHHhchhhCCcEEEEEechHhCCHH-------------HHHHHHHHHHh-----------------------CCCcEEEE
Confidence 3222112245679999999998654 68999999983 11244555
Q ss_pred cCCCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHH
Q 038067 299 CGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQ 378 (510)
Q Consensus 299 ~tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~ee 378 (510)
++++.. ..+.|.+++|+.. +.|.+++.++
T Consensus 154 L~Tt~~--------------------------------------------------~KLl~TI~SRcq~-ieF~~Ls~~e 182 (605)
T PRK05896 154 FATTEF--------------------------------------------------QKIPLTIISRCQR-YNFKKLNNSE 182 (605)
T ss_pred EECCCh--------------------------------------------------HhhhHHHHhhhhh-cccCCCCHHH
Confidence 544300 1256678899864 6999999999
Q ss_pred HHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHH
Q 038067 379 LVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENIL 437 (510)
Q Consensus 379 l~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l 437 (510)
+...+...+ ...+ +.+++++++.|++.+ +++.|.+.+.++.+.
T Consensus 183 L~~~L~~il-----------~keg--i~Is~eal~~La~lS---~GdlR~AlnlLekL~ 225 (605)
T PRK05896 183 LQELLKSIA-----------KKEK--IKIEDNAIDKIADLA---DGSLRDGLSILDQLS 225 (605)
T ss_pred HHHHHHHHH-----------HHcC--CCCCHHHHHHHHHHc---CCcHHHHHHHHHHHH
Confidence 988886421 1223 457899999999986 556888888888754
No 131
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.40 E-value=4.4e-12 Score=130.55 Aligned_cols=171 Identities=26% Similarity=0.338 Sum_probs=106.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhC-----CCeEEEecccccccc--cc----------cc------chhhHHHHHHHhh
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVN-----VPFTITDATALTQAG--YV----------GE------DAESVLYKLLAAA 220 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~-----~p~~~~~~s~l~~~g--y~----------G~------~~~~~l~~l~~~~ 220 (510)
.+++|+||||||||++|+++++.+. .+++.+++.++.... +. +. .....++.+.+..
T Consensus 37 ~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (337)
T PRK12402 37 PHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEY 116 (337)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHH
Confidence 3799999999999999999999883 357788887653210 10 00 0011122222111
Q ss_pred chh-HHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeec
Q 038067 221 DFD-VEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFIC 299 (510)
Q Consensus 221 ~~~-~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~ 299 (510)
... -......+|+|||++.+... .++.|+++++. . ..+..||+
T Consensus 117 ~~~~~~~~~~~vlilDe~~~l~~~-------------~~~~L~~~le~---------~--------------~~~~~~Il 160 (337)
T PRK12402 117 ASYRPLSADYKTILLDNAEALRED-------------AQQALRRIMEQ---------Y--------------SRTCRFII 160 (337)
T ss_pred HhcCCCCCCCcEEEEeCcccCCHH-------------HHHHHHHHHHh---------c--------------cCCCeEEE
Confidence 000 00134579999999988643 58889999872 0 11233444
Q ss_pred CCCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHH
Q 038067 300 GGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQL 379 (510)
Q Consensus 300 tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel 379 (510)
+++.. ..+.+.+.+|.. .+.|.+++.+++
T Consensus 161 ~~~~~--------------------------------------------------~~~~~~L~sr~~-~v~~~~~~~~~~ 189 (337)
T PRK12402 161 ATRQP--------------------------------------------------SKLIPPIRSRCL-PLFFRAPTDDEL 189 (337)
T ss_pred EeCCh--------------------------------------------------hhCchhhcCCce-EEEecCCCHHHH
Confidence 44310 013456777874 579999999999
Q ss_pred HHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHH
Q 038067 380 VQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENIL 437 (510)
Q Consensus 380 ~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l 437 (510)
.+++...+ ...+ +.+++++++.|++.+ +++.|.+.+.++...
T Consensus 190 ~~~l~~~~-----------~~~~--~~~~~~al~~l~~~~---~gdlr~l~~~l~~~~ 231 (337)
T PRK12402 190 VDVLESIA-----------EAEG--VDYDDDGLELIAYYA---GGDLRKAILTLQTAA 231 (337)
T ss_pred HHHHHHHH-----------HHcC--CCCCHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 88887421 2234 448999999999975 556788777776533
No 132
>PRK05642 DNA replication initiation factor; Validated
Probab=99.39 E-value=4.2e-12 Score=124.98 Aligned_cols=168 Identities=19% Similarity=0.284 Sum_probs=111.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhh
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKI 240 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl 240 (510)
.+++|+||+|||||+|++++++.+ +..++++++.++... ... +.+.+. ...+|+||+++.+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~------~~~-~~~~~~---------~~d~LiiDDi~~~ 109 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR------GPE-LLDNLE---------QYELVCLDDLDVI 109 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh------hHH-HHHhhh---------hCCEEEEechhhh
Confidence 579999999999999999999765 567777777766531 011 111111 2258999999987
Q ss_pred hhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCC
Q 038067 241 VKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIG 320 (510)
Q Consensus 241 ~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~g 320 (510)
.... ..+..|+.+++.. ..++..+|+|++..
T Consensus 110 ~~~~-----------~~~~~Lf~l~n~~----------------------~~~g~~ilits~~~---------------- 140 (234)
T PRK05642 110 AGKA-----------DWEEALFHLFNRL----------------------RDSGRRLLLAASKS---------------- 140 (234)
T ss_pred cCCh-----------HHHHHHHHHHHHH----------------------HhcCCEEEEeCCCC----------------
Confidence 5332 2467788887521 01112233333310
Q ss_pred cCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccC--ceEecCCCCHHHHHHHHhchhHHHHHHHHHHH
Q 038067 321 FGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFP--ILVSLSALNEDQLVQVLMEPKNALGRQYKKMF 398 (510)
Q Consensus 321 f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~--~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~ 398 (510)
|.++ ....|.+.+|+. .++.+.+++.+++.+|++...
T Consensus 141 ----------------------------p~~l--~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka----------- 179 (234)
T PRK05642 141 ----------------------------PREL--PIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRA----------- 179 (234)
T ss_pred ----------------------------HHHc--CccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHH-----------
Confidence 1111 124688999994 577899999999999987411
Q ss_pred hcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHHh
Q 038067 399 SMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMF 442 (510)
Q Consensus 399 ~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~ 442 (510)
... .+.++++++++|++.. ...+|.|..+++++...++.
T Consensus 180 ~~~--~~~l~~ev~~~L~~~~---~~d~r~l~~~l~~l~~~~l~ 218 (234)
T PRK05642 180 SRR--GLHLTDEVGHFILTRG---TRSMSALFDLLERLDQASLQ 218 (234)
T ss_pred HHc--CCCCCHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHH
Confidence 112 3678999999999985 66789999999988654443
No 133
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.39 E-value=1.1e-13 Score=124.47 Aligned_cols=121 Identities=24% Similarity=0.384 Sum_probs=71.7
Q ss_pred eEEEEccCCChHHHHHHHHHHHhCCCeEEEecccccccc-ccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhhhh
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAG-YVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIVKA 243 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~g-y~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~~~ 243 (510)
+|+|+||||||||++|+.+|+.++.++..+.++..++.. +.|.-....-...+...+.......++|++||||+++.+.
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin~a~~~ 80 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEINRAPPE 80 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCGG--HH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcccCCHH
Confidence 589999999999999999999999999999998765431 1111100000000000111111236789999999998754
Q ss_pred ccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCC
Q 038067 244 ESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGA 302 (510)
Q Consensus 244 ~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~ 302 (510)
+++.|+.+++++.+.++ ..+......... ....++.||+|+|
T Consensus 81 -------------v~~~L~~ll~~~~~~~~--~~~~~~~~~~~~--~~~~~~~ii~t~N 122 (139)
T PF07728_consen 81 -------------VLESLLSLLEERRIQLP--EGGEEIKEPNND--LASPNFRIIATMN 122 (139)
T ss_dssp -------------HHHTTHHHHSSSEEEE---TSSSEEE--TT--------EEEEEEES
T ss_pred -------------HHHHHHHHHhhCccccc--CCCcEEecCccc--ccccceEEEEEEc
Confidence 99999999998877765 333222111111 2223688888887
No 134
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.39 E-value=5.2e-12 Score=140.45 Aligned_cols=172 Identities=24% Similarity=0.333 Sum_probs=110.2
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhCCCeEE---Eecccc---c--ccccc-cc----chhhHHHHHHHhhchhHHHhcC
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVNVPFTI---TDATAL---T--QAGYV-GE----DAESVLYKLLAAADFDVEAAQR 229 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~---~~~s~l---~--~~gy~-G~----~~~~~l~~l~~~~~~~~~~~~~ 229 (510)
++.+||+||+|+|||++|+++|+.+..+-.. -.|..- . ...++ +. .....++.+.......-..+..
T Consensus 40 ~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~ 119 (725)
T PRK07133 40 SHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKY 119 (725)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCC
Confidence 3568999999999999999999998432100 000000 0 00000 00 0012244554443222223566
Q ss_pred cEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHH
Q 038067 230 GIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKT 309 (510)
Q Consensus 230 ~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~ 309 (510)
.|++|||+|.|... .+++||+.||. ....++||++++..
T Consensus 120 KV~IIDEa~~LT~~-------------A~NALLKtLEE-----------------------PP~~tifILaTte~----- 158 (725)
T PRK07133 120 KIYIIDEVHMLSKS-------------AFNALLKTLEE-----------------------PPKHVIFILATTEV----- 158 (725)
T ss_pred EEEEEEChhhCCHH-------------HHHHHHHHhhc-----------------------CCCceEEEEEcCCh-----
Confidence 79999999998754 69999999983 12345566654410
Q ss_pred HHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHH
Q 038067 310 ISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNA 389 (510)
Q Consensus 310 i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~ 389 (510)
..+.|.+++|+. ++.|.+++.+++.+.+...
T Consensus 159 ---------------------------------------------~KLl~TI~SRcq-~ieF~~L~~eeI~~~L~~i--- 189 (725)
T PRK07133 159 ---------------------------------------------HKIPLTILSRVQ-RFNFRRISEDEIVSRLEFI--- 189 (725)
T ss_pred ---------------------------------------------hhhhHHHHhhce-eEEccCCCHHHHHHHHHHH---
Confidence 125667899996 5799999999998888641
Q ss_pred HHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHH
Q 038067 390 LGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENIL 437 (510)
Q Consensus 390 l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l 437 (510)
+...+ +.+++++++.|+..+ .++.|.+.+.++++.
T Consensus 190 --------l~keg--I~id~eAl~~LA~lS---~GslR~AlslLekl~ 224 (725)
T PRK07133 190 --------LEKEN--ISYEKNALKLIAKLS---SGSLRDALSIAEQVS 224 (725)
T ss_pred --------HHHcC--CCCCHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 12233 567899999999986 566888888888754
No 135
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.39 E-value=7.3e-12 Score=134.42 Aligned_cols=164 Identities=22% Similarity=0.295 Sum_probs=108.3
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhCCC-------------------------eEEEeccccccccccccchhhHHHHHH
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVNVP-------------------------FTITDATALTQAGYVGEDAESVLYKLL 217 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~~p-------------------------~~~~~~s~l~~~gy~G~~~~~~l~~l~ 217 (510)
+..+||+||+|+|||++|+.+|+.+..+ ++.++.. ...|. ..++.+.
T Consensus 39 ~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~i~g~-----~~~gi---d~ir~i~ 110 (451)
T PRK06305 39 AHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVLEIDGA-----SHRGI---EDIRQIN 110 (451)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceEEeecc-----ccCCH---HHHHHHH
Confidence 4569999999999999999999988421 1111111 11111 1233333
Q ss_pred HhhchhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCcee
Q 038067 218 AAADFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILF 297 (510)
Q Consensus 218 ~~~~~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilf 297 (510)
+...+....+...|++|||+|.+... .++.|++.||. ...+++|
T Consensus 111 ~~l~~~~~~~~~kvvIIdead~lt~~-------------~~n~LLk~lEe-----------------------p~~~~~~ 154 (451)
T PRK06305 111 ETVLFTPSKSRYKIYIIDEVHMLTKE-------------AFNSLLKTLEE-----------------------PPQHVKF 154 (451)
T ss_pred HHHHhhhhcCCCEEEEEecHHhhCHH-------------HHHHHHHHhhc-----------------------CCCCceE
Confidence 32222222356789999999998754 68999999983 1123455
Q ss_pred ecCCCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHH
Q 038067 298 ICGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNED 377 (510)
Q Consensus 298 I~tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~e 377 (510)
|++++.. ..+.+.+.+|+.. +.|.+++++
T Consensus 155 Il~t~~~--------------------------------------------------~kl~~tI~sRc~~-v~f~~l~~~ 183 (451)
T PRK06305 155 FLATTEI--------------------------------------------------HKIPGTILSRCQK-MHLKRIPEE 183 (451)
T ss_pred EEEeCCh--------------------------------------------------HhcchHHHHhceE-EeCCCCCHH
Confidence 5544310 1255678889965 699999999
Q ss_pred HHHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHH
Q 038067 378 QLVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENIL 437 (510)
Q Consensus 378 el~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l 437 (510)
++.+.+... . ... .+.+++++++.|+..+ +++.|.+.+.++++.
T Consensus 184 el~~~L~~~----~-------~~e--g~~i~~~al~~L~~~s---~gdlr~a~~~Lekl~ 227 (451)
T PRK06305 184 TIIDKLALI----A-------KQE--GIETSREALLPIARAA---QGSLRDAESLYDYVV 227 (451)
T ss_pred HHHHHHHHH----H-------HHc--CCCCCHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 998887641 1 112 3557999999999986 566888888888765
No 136
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.39 E-value=2.8e-12 Score=124.60 Aligned_cols=166 Identities=19% Similarity=0.290 Sum_probs=108.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVD 238 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEid 238 (510)
.+.+++|+||+|||||++|+++++.+ +.+++.+++..+... . ...+... ....+|+|||++
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~------~----~~~~~~~------~~~~lLvIDdi~ 100 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQA------D----PEVLEGL------EQADLVCLDDVE 100 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHh------H----HHHHhhc------ccCCEEEEeChh
Confidence 45689999999999999999999887 468888998887531 0 1111111 134699999999
Q ss_pred hhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCC
Q 038067 239 KIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSS 318 (510)
Q Consensus 239 kl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~ 318 (510)
.+.... ..++.|..+++... + .+..+|+|++..
T Consensus 101 ~l~~~~-----------~~~~~L~~~l~~~~------~----------------~~~~iIits~~~-------------- 133 (226)
T TIGR03420 101 AIAGQP-----------EWQEALFHLYNRVR------E----------------AGGRLLIAGRAA-------------- 133 (226)
T ss_pred hhcCCh-----------HHHHHHHHHHHHHH------H----------------cCCeEEEECCCC--------------
Confidence 986431 13667777775210 0 011234444310
Q ss_pred CCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccC--ceEecCCCCHHHHHHHHhchhHHHHHHHHH
Q 038067 319 IGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFP--ILVSLSALNEDQLVQVLMEPKNALGRQYKK 396 (510)
Q Consensus 319 ~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~--~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~ 396 (510)
+.++ ....+.+.+|+. ..+.+++++.+++..+++.. .
T Consensus 134 ------------------------------~~~~--~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~--------~- 172 (226)
T TIGR03420 134 ------------------------------PAQL--PLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSR--------A- 172 (226)
T ss_pred ------------------------------hHHC--CcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHH--------H-
Confidence 0000 012257778874 67899999999988888531 1
Q ss_pred HHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHH
Q 038067 397 MFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILT 438 (510)
Q Consensus 397 ~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~ 438 (510)
. ...+.++++++++|++. +.++.|.|+++++.+-.
T Consensus 173 --~--~~~~~~~~~~l~~L~~~---~~gn~r~L~~~l~~~~~ 207 (226)
T TIGR03420 173 --A--RRGLQLPDEVADYLLRH---GSRDMGSLMALLDALDR 207 (226)
T ss_pred --H--HcCCCCCHHHHHHHHHh---ccCCHHHHHHHHHHHHH
Confidence 1 12356899999999984 46669999999998553
No 137
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.38 E-value=1.5e-11 Score=125.95 Aligned_cols=170 Identities=18% Similarity=0.257 Sum_probs=110.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhhhh
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIVKA 243 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~~~ 243 (510)
..+||+||||+|||++|+++++.++.+++.+++++ ... . .....+.......+ ......||+|||+|.+...
T Consensus 44 ~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~~~---~-~i~~~l~~~~~~~~---~~~~~~vliiDe~d~l~~~ 115 (316)
T PHA02544 44 NMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-CRI---D-FVRNRLTRFASTVS---LTGGGKVIIIDEFDRLGLA 115 (316)
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-ccH---H-HHHHHHHHHHHhhc---ccCCCeEEEEECcccccCH
Confidence 45666999999999999999999988888888876 211 0 01111211111111 0135689999999988432
Q ss_pred ccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCcCc
Q 038067 244 ESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGFGA 323 (510)
Q Consensus 244 ~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf~~ 323 (510)
..++.|..+++. ...++.||++++..
T Consensus 116 ------------~~~~~L~~~le~-----------------------~~~~~~~Ilt~n~~------------------- 141 (316)
T PHA02544 116 ------------DAQRHLRSFMEA-----------------------YSKNCSFIITANNK------------------- 141 (316)
T ss_pred ------------HHHHHHHHHHHh-----------------------cCCCceEEEEcCCh-------------------
Confidence 157788888872 11345566666510
Q ss_pred ccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHhcCCc
Q 038067 324 PVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFSMNNV 403 (510)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~~~~~ 403 (510)
..+.|.+.+|+. ++.|+.++.++...++.. +.+++...+...+
T Consensus 142 -------------------------------~~l~~~l~sR~~-~i~~~~p~~~~~~~il~~----~~~~~~~~~~~~~- 184 (316)
T PHA02544 142 -------------------------------NGIIEPLRSRCR-VIDFGVPTKEEQIEMMKQ----MIVRCKGILEAEG- 184 (316)
T ss_pred -------------------------------hhchHHHHhhce-EEEeCCCCHHHHHHHHHH----HHHHHHHHHHhcC-
Confidence 126678999996 469999999999888875 3333333333334
Q ss_pred eeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHH
Q 038067 404 KLHFTDDALRLIAKKAMAKNTGARGLRALLENI 436 (510)
Q Consensus 404 ~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~ 436 (510)
+.++++++..+++..+ .+.|.+-+.++..
T Consensus 185 -~~i~~~al~~l~~~~~---~d~r~~l~~l~~~ 213 (316)
T PHA02544 185 -VEVDMKVLAALVKKNF---PDFRRTINELQRY 213 (316)
T ss_pred -CCCCHHHHHHHHHhcC---CCHHHHHHHHHHH
Confidence 4569999999998753 3456666666643
No 138
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.38 E-value=5.8e-12 Score=136.56 Aligned_cols=165 Identities=24% Similarity=0.336 Sum_probs=110.0
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhCC-------C-----------------eEEEeccccccccccccchhhHHHHHHH
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVNV-------P-----------------FTITDATALTQAGYVGEDAESVLYKLLA 218 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~~-------p-----------------~~~~~~s~l~~~gy~G~~~~~~l~~l~~ 218 (510)
++.+||+||+|+|||++|+++|+.+.. | ++.+++++ ..| -..++.+..
T Consensus 36 ~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eldaas-----~~g---Id~IRelie 107 (535)
T PRK08451 36 AHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDAAS-----NRG---IDDIRELIE 107 (535)
T ss_pred CeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEecccc-----ccC---HHHHHHHHH
Confidence 345799999999999999999998831 1 11222111 001 123444443
Q ss_pred hhchhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceee
Q 038067 219 AADFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFI 298 (510)
Q Consensus 219 ~~~~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI 298 (510)
...+.-..+...|++|||+|.|... .+++||+.||. ...++.||
T Consensus 108 ~~~~~P~~~~~KVvIIDEad~Lt~~-------------A~NALLK~LEE-----------------------pp~~t~FI 151 (535)
T PRK08451 108 QTKYKPSMARFKIFIIDEVHMLTKE-------------AFNALLKTLEE-----------------------PPSYVKFI 151 (535)
T ss_pred HHhhCcccCCeEEEEEECcccCCHH-------------HHHHHHHHHhh-----------------------cCCceEEE
Confidence 3211111235579999999998765 69999999983 12345566
Q ss_pred cCCCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHH
Q 038067 299 CGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQ 378 (510)
Q Consensus 299 ~tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~ee 378 (510)
++++.. ..+.|.+++|.. .+.|.+++.++
T Consensus 152 L~ttd~--------------------------------------------------~kL~~tI~SRc~-~~~F~~Ls~~e 180 (535)
T PRK08451 152 LATTDP--------------------------------------------------LKLPATILSRTQ-HFRFKQIPQNS 180 (535)
T ss_pred EEECCh--------------------------------------------------hhCchHHHhhce-eEEcCCCCHHH
Confidence 655410 126678999975 66999999999
Q ss_pred HHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHH
Q 038067 379 LVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILT 438 (510)
Q Consensus 379 l~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~ 438 (510)
+.+.+... +...| +.+++++++.|++.+ .++.|.+.+.+++.+.
T Consensus 181 i~~~L~~I-----------l~~EG--i~i~~~Al~~Ia~~s---~GdlR~alnlLdqai~ 224 (535)
T PRK08451 181 IISHLKTI-----------LEKEG--VSYEPEALEILARSG---NGSLRDTLTLLDQAII 224 (535)
T ss_pred HHHHHHHH-----------HHHcC--CCCCHHHHHHHHHHc---CCcHHHHHHHHHHHHH
Confidence 88877641 12234 567999999999986 5678988888887664
No 139
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=4.9e-12 Score=133.91 Aligned_cols=172 Identities=20% Similarity=0.274 Sum_probs=105.5
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhCCCe-E---------EEeccc------cc---ccc---ccccch--hhHHHHHHH
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVNVPF-T---------ITDATA------LT---QAG---YVGEDA--ESVLYKLLA 218 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~~p~-~---------~~~~s~------l~---~~g---y~G~~~--~~~l~~l~~ 218 (510)
++.+||+||+|+|||++|+++|+.+...- . .-.|.. +. ... +-|.+. -..++.+.+
T Consensus 38 ~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~ 117 (397)
T PRK14955 38 GHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRE 117 (397)
T ss_pred ceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHH
Confidence 35699999999999999999999985420 0 000100 00 000 111110 122333333
Q ss_pred hhchhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceee
Q 038067 219 AADFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFI 298 (510)
Q Consensus 219 ~~~~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI 298 (510)
.....-..+...|++|||++++... .++.|++.+|. ....++||
T Consensus 118 ~~~~~p~~~~~kvvIIdea~~l~~~-------------~~~~LLk~LEe-----------------------p~~~t~~I 161 (397)
T PRK14955 118 NVRYGPQKGRYRVYIIDEVHMLSIA-------------AFNAFLKTLEE-----------------------PPPHAIFI 161 (397)
T ss_pred HHhhchhcCCeEEEEEeChhhCCHH-------------HHHHHHHHHhc-----------------------CCCCeEEE
Confidence 3211112345679999999998754 58899999982 11223444
Q ss_pred cCCCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHH
Q 038067 299 CGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQ 378 (510)
Q Consensus 299 ~tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~ee 378 (510)
++++ +. ..+.+.+.+|.. ++.|.++++++
T Consensus 162 l~t~--~~------------------------------------------------~kl~~tl~sR~~-~v~f~~l~~~e 190 (397)
T PRK14955 162 FATT--EL------------------------------------------------HKIPATIASRCQ-RFNFKRIPLEE 190 (397)
T ss_pred EEeC--Ch------------------------------------------------HHhHHHHHHHHH-HhhcCCCCHHH
Confidence 4333 00 114456777776 46999999999
Q ss_pred HHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHH
Q 038067 379 LVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENIL 437 (510)
Q Consensus 379 l~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l 437 (510)
+.+.+...+ .. ..+.+++++++.|+..+ +++.|.+.+.++++.
T Consensus 191 i~~~l~~~~-----------~~--~g~~i~~~al~~l~~~s---~g~lr~a~~~L~kl~ 233 (397)
T PRK14955 191 IQQQLQGIC-----------EA--EGISVDADALQLIGRKA---QGSMRDAQSILDQVI 233 (397)
T ss_pred HHHHHHHHH-----------HH--cCCCCCHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 988776421 11 24568999999999986 566888888888755
No 140
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.38 E-value=4.6e-12 Score=124.76 Aligned_cols=65 Identities=18% Similarity=0.338 Sum_probs=52.7
Q ss_pred CchhhhcccC--ceEecCCCCHHHHHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHH
Q 038067 357 LIPEFIGRFP--ILVSLSALNEDQLVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLE 434 (510)
Q Consensus 357 ~~Pefl~R~~--~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie 434 (510)
+.|.|.+|+. .++.+.+++.+++.+++++.. ... .+.++++++++|++.. ..+.|.+..+++
T Consensus 148 ~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a-----------~~~--~~~l~~~v~~~L~~~~---~~d~r~l~~~l~ 211 (235)
T PRK08084 148 GLPDLASRLDWGQIYKLQPLSDEEKLQALQLRA-----------RLR--GFELPEDVGRFLLKRL---DREMRTLFMTLD 211 (235)
T ss_pred ccHHHHHHHhCCceeeecCCCHHHHHHHHHHHH-----------HHc--CCCCCHHHHHHHHHhh---cCCHHHHHHHHH
Confidence 5689999995 678999999999999986411 112 3779999999999986 667899999999
Q ss_pred HHH
Q 038067 435 NIL 437 (510)
Q Consensus 435 ~~l 437 (510)
++-
T Consensus 212 ~l~ 214 (235)
T PRK08084 212 QLD 214 (235)
T ss_pred HHH
Confidence 854
No 141
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.38 E-value=6.4e-12 Score=137.91 Aligned_cols=172 Identities=22% Similarity=0.322 Sum_probs=109.3
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhCC-------CeEEE-ecccccc---cc---ccccc--hhhHHHHHHHhhchhHHH
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVNV-------PFTIT-DATALTQ---AG---YVGED--AESVLYKLLAAADFDVEA 226 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~~-------p~~~~-~~s~l~~---~g---y~G~~--~~~~l~~l~~~~~~~~~~ 226 (510)
++.+||+||+|+|||++|+++|+.++. |.-.+ +|..+.. .. +-|.+ .-..++.+.......-..
T Consensus 38 ~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~ 117 (563)
T PRK06647 38 ANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPAS 117 (563)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhc
Confidence 356999999999999999999999853 11111 0001000 00 00110 012233433322221123
Q ss_pred hcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccch
Q 038067 227 AQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGL 306 (510)
Q Consensus 227 ~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l 306 (510)
+...|++|||++.+... .++.||+.||. ...+++||++++. +
T Consensus 118 ~~~KVvIIDEa~~Ls~~-------------a~naLLK~LEe-----------------------pp~~~vfI~~tte--~ 159 (563)
T PRK06647 118 SRYRVYIIDEVHMLSNS-------------AFNALLKTIEE-----------------------PPPYIVFIFATTE--V 159 (563)
T ss_pred CCCEEEEEEChhhcCHH-------------HHHHHHHhhcc-----------------------CCCCEEEEEecCC--h
Confidence 56679999999998754 69999999982 1234566665440 0
Q ss_pred HHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhch
Q 038067 307 EKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEP 386 (510)
Q Consensus 307 ~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~ 386 (510)
..+.+.+.+|+.. +.|.+++.+++.+.+...
T Consensus 160 ------------------------------------------------~kL~~tI~SRc~~-~~f~~l~~~el~~~L~~i 190 (563)
T PRK06647 160 ------------------------------------------------HKLPATIKSRCQH-FNFRLLSLEKIYNMLKKV 190 (563)
T ss_pred ------------------------------------------------HHhHHHHHHhceE-EEecCCCHHHHHHHHHHH
Confidence 1255678889875 599999999988887641
Q ss_pred hHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHH
Q 038067 387 KNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENIL 437 (510)
Q Consensus 387 ~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l 437 (510)
. ...+ +.++++++.+|++.+ .++.|.+.+.+++++
T Consensus 191 ~-----------~~eg--i~id~eAl~lLa~~s---~GdlR~alslLdkli 225 (563)
T PRK06647 191 C-----------LEDQ--IKYEDEALKWIAYKS---TGSVRDAYTLFDQVV 225 (563)
T ss_pred H-----------HHcC--CCCCHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 1 1123 568999999999975 556899999988765
No 142
>PRK04195 replication factor C large subunit; Provisional
Probab=99.37 E-value=8.2e-12 Score=135.44 Aligned_cols=165 Identities=25% Similarity=0.325 Sum_probs=105.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhch--hHHHhcCcEEEEcchhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADF--DVEAAQRGIVYIDEVDK 239 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~--~~~~~~~~Vl~iDEidk 239 (510)
++.++||+||||||||++|+++|+.++.+++.+++++.... ..+......... .+......||+|||+|.
T Consensus 38 ~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~--------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~ 109 (482)
T PRK04195 38 PKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTA--------DVIERVAGEAATSGSLFGARRKLILLDEVDG 109 (482)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccH--------HHHHHHHHHhhccCcccCCCCeEEEEecCcc
Confidence 35789999999999999999999999999999999875421 122222221110 00012467999999999
Q ss_pred hhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCC
Q 038067 240 IVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSI 319 (510)
Q Consensus 240 l~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~ 319 (510)
+.... ....++.|+++++. ++..|||++|..
T Consensus 110 L~~~~---------d~~~~~aL~~~l~~-------------------------~~~~iIli~n~~--------------- 140 (482)
T PRK04195 110 IHGNE---------DRGGARAILELIKK-------------------------AKQPIILTANDP--------------- 140 (482)
T ss_pred ccccc---------chhHHHHHHHHHHc-------------------------CCCCEEEeccCc---------------
Confidence 86421 01257888888861 122344444410
Q ss_pred CcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCch-hhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHH
Q 038067 320 GFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIP-EFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMF 398 (510)
Q Consensus 320 gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~P-efl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~ 398 (510)
..+.+ .+.+|+ ..|.|.+++.+++..++...+
T Consensus 141 -----------------------------------~~~~~k~Lrsr~-~~I~f~~~~~~~i~~~L~~i~----------- 173 (482)
T PRK04195 141 -----------------------------------YDPSLRELRNAC-LMIEFKRLSTRSIVPVLKRIC----------- 173 (482)
T ss_pred -----------------------------------cccchhhHhccc-eEEEecCCCHHHHHHHHHHHH-----------
Confidence 01222 445555 457999999999888886421
Q ss_pred hcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHH
Q 038067 399 SMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLEN 435 (510)
Q Consensus 399 ~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~ 435 (510)
...+ +.+++++++.|++.+ ++..|.+.+.++.
T Consensus 174 ~~eg--i~i~~eaL~~Ia~~s---~GDlR~ain~Lq~ 205 (482)
T PRK04195 174 RKEG--IECDDEALKEIAERS---GGDLRSAINDLQA 205 (482)
T ss_pred HHcC--CCCCHHHHHHHHHHc---CCCHHHHHHHHHH
Confidence 1233 457899999999975 4445655555544
No 143
>PRK06893 DNA replication initiation factor; Validated
Probab=99.37 E-value=4.9e-12 Score=124.11 Aligned_cols=164 Identities=15% Similarity=0.233 Sum_probs=105.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhh
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKI 240 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl 240 (510)
..++|+||||||||+|++++|+.+ +....++++..... .....+... ....+|+|||++.+
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~----------~~~~~~~~~------~~~dlLilDDi~~~ 103 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQY----------FSPAVLENL------EQQDLVCLDDLQAV 103 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhh----------hhHHHHhhc------ccCCEEEEeChhhh
Confidence 358999999999999999999887 34445555432211 001111111 23469999999997
Q ss_pred hhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCC
Q 038067 241 VKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIG 320 (510)
Q Consensus 241 ~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~g 320 (510)
.... ..+..|+.+++... ...+.++|+|++..
T Consensus 104 ~~~~-----------~~~~~l~~l~n~~~---------------------~~~~~illits~~~---------------- 135 (229)
T PRK06893 104 IGNE-----------EWELAIFDLFNRIK---------------------EQGKTLLLISADCS---------------- 135 (229)
T ss_pred cCCh-----------HHHHHHHHHHHHHH---------------------HcCCcEEEEeCCCC----------------
Confidence 6432 14556777775210 01122333444310
Q ss_pred cCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccC--ceEecCCCCHHHHHHHHhchhHHHHHHHHHHH
Q 038067 321 FGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFP--ILVSLSALNEDQLVQVLMEPKNALGRQYKKMF 398 (510)
Q Consensus 321 f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~--~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~ 398 (510)
|.++ ....|.+.+|+. .++.+.+++.+++.+|+++..
T Consensus 136 ----------------------------p~~l--~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a----------- 174 (229)
T PRK06893 136 ----------------------------PHAL--SIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNA----------- 174 (229)
T ss_pred ----------------------------hHHc--cccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHH-----------
Confidence 1111 123478888874 578999999999999997521
Q ss_pred hcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHH
Q 038067 399 SMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENIL 437 (510)
Q Consensus 399 ~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l 437 (510)
. ...+.++++++++|+++. ..+.|.|..+++++-
T Consensus 175 ~--~~~l~l~~~v~~~L~~~~---~~d~r~l~~~l~~l~ 208 (229)
T PRK06893 175 Y--QRGIELSDEVANFLLKRL---DRDMHTLFDALDLLD 208 (229)
T ss_pred H--HcCCCCCHHHHHHHHHhc---cCCHHHHHHHHHHHH
Confidence 1 124788999999999986 567899999999864
No 144
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=1.1e-11 Score=129.92 Aligned_cols=171 Identities=26% Similarity=0.366 Sum_probs=108.3
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEecc-------ccccccccccchhhHHHHHHHhhchhHHHhcCcEEEE
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDAT-------ALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYI 234 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s-------~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~i 234 (510)
.++++||+||||+|||++|+++++.++.+.....+. ++...+. .. ...+..++......-..+...||+|
T Consensus 38 ~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~--~~-~~~i~~l~~~~~~~p~~~~~kiviI 114 (367)
T PRK14970 38 LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASN--NS-VDDIRNLIDQVRIPPQTGKYKIYII 114 (367)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccC--CC-HHHHHHHHHHHhhccccCCcEEEEE
Confidence 346899999999999999999999885421111100 0100000 00 1234444433211101234579999
Q ss_pred cchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhc
Q 038067 235 DEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERR 314 (510)
Q Consensus 235 DEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~ 314 (510)
||++.+... .++.|++.++. ...+.+||++++.
T Consensus 115 DE~~~l~~~-------------~~~~ll~~le~-----------------------~~~~~~~Il~~~~----------- 147 (367)
T PRK14970 115 DEVHMLSSA-------------AFNAFLKTLEE-----------------------PPAHAIFILATTE----------- 147 (367)
T ss_pred eChhhcCHH-------------HHHHHHHHHhC-----------------------CCCceEEEEEeCC-----------
Confidence 999998654 58899999973 1123345554431
Q ss_pred ccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHH
Q 038067 315 QDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQY 394 (510)
Q Consensus 315 ~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~ 394 (510)
...+.|.+.+|+. ++.|.+++.+++..++....
T Consensus 148 ---------------------------------------~~kl~~~l~sr~~-~v~~~~~~~~~l~~~l~~~~------- 180 (367)
T PRK14970 148 ---------------------------------------KHKIIPTILSRCQ-IFDFKRITIKDIKEHLAGIA------- 180 (367)
T ss_pred ---------------------------------------cccCCHHHHhcce-eEecCCccHHHHHHHHHHHH-------
Confidence 0125667888885 46999999999888886421
Q ss_pred HHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHH
Q 038067 395 KKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILT 438 (510)
Q Consensus 395 ~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~ 438 (510)
...+ +.+++++++.|+..+ +++.|.+.+.+++++.
T Consensus 181 ----~~~g--~~i~~~al~~l~~~~---~gdlr~~~~~lekl~~ 215 (367)
T PRK14970 181 ----VKEG--IKFEDDALHIIAQKA---DGALRDALSIFDRVVT 215 (367)
T ss_pred ----HHcC--CCCCHHHHHHHHHhC---CCCHHHHHHHHHHHHH
Confidence 1123 458999999999975 5568999999988763
No 145
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.36 E-value=1.9e-11 Score=138.00 Aligned_cols=169 Identities=24% Similarity=0.368 Sum_probs=110.0
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCC-------eEEEeccccc-cccccccchhhHHHHHHHhhchhHHHhcCc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVP-------FTITDATALT-QAGYVGEDAESVLYKLLAAADFDVEAAQRG 230 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p-------~~~~~~s~l~-~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~ 230 (510)
.+.|+||+||||||||++|+.+|..+ +.| ++.++.+.+. ...|.|+- +..+..++... .+..++
T Consensus 206 ~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~-e~rl~~l~~~l----~~~~~~ 280 (758)
T PRK11034 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDF-EKRFKALLKQL----EQDTNS 280 (758)
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhH-HHHHHHHHHHH----HhcCCC
Confidence 45689999999999999999999865 334 3444444333 12355543 44555555432 345678
Q ss_pred EEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHH
Q 038067 231 IVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTI 310 (510)
Q Consensus 231 Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i 310 (510)
|||||||+.+........ ....+.+.|..+++. .++.+|.+++..++.+++
T Consensus 281 ILfIDEIh~L~g~g~~~~----g~~d~~nlLkp~L~~-------------------------g~i~vIgATt~~E~~~~~ 331 (758)
T PRK11034 281 ILFIDEIHTIIGAGAASG----GQVDAANLIKPLLSS-------------------------GKIRVIGSTTYQEFSNIF 331 (758)
T ss_pred EEEeccHHHHhccCCCCC----cHHHHHHHHHHHHhC-------------------------CCeEEEecCChHHHHHHh
Confidence 999999999976532111 122466667777752 234566666643322221
Q ss_pred HhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHH
Q 038067 311 SERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNAL 390 (510)
Q Consensus 311 ~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l 390 (510)
...|+|.+||. .|.+.+++.++..+|++. +
T Consensus 332 ---------------------------------------------~~D~AL~rRFq-~I~v~ePs~~~~~~IL~~----~ 361 (758)
T PRK11034 332 ---------------------------------------------EKDRALARRFQ-KIDITEPSIEETVQIING----L 361 (758)
T ss_pred ---------------------------------------------hccHHHHhhCc-EEEeCCCCHHHHHHHHHH----H
Confidence 15788999997 579999999999999984 3
Q ss_pred HHHHHHHHhcCCceeeeCHHHHHHHHHhh
Q 038067 391 GRQYKKMFSMNNVKLHFTDDALRLIAKKA 419 (510)
Q Consensus 391 ~~~~~~~~~~~~~~l~is~~al~~La~~~ 419 (510)
...|.. ...+.++++++..+++.+
T Consensus 362 ~~~ye~-----~h~v~i~~~al~~a~~ls 385 (758)
T PRK11034 362 KPKYEA-----HHDVRYTAKAVRAAVELA 385 (758)
T ss_pred HHHhhh-----ccCCCcCHHHHHHHHHHh
Confidence 334432 235678899998877753
No 146
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.36 E-value=7.2e-12 Score=132.97 Aligned_cols=176 Identities=18% Similarity=0.305 Sum_probs=112.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHHh-----CCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchh
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIV-----NVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVD 238 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l-----~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEid 238 (510)
.+++|+||+|+|||+|++++++.+ +..++++++.++... +...-..+.+..+... -....+|+|||++
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~-~~~~~~~~~~~~~~~~------~~~~dlLiiDDi~ 209 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTND-FVNALRNNKMEEFKEK------YRSVDLLLIDDIQ 209 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHH-HHHHHHcCCHHHHHHH------HHhCCEEEEehhh
Confidence 469999999999999999999887 467888888766421 1110000011111110 1234699999999
Q ss_pred hhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCC
Q 038067 239 KIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSS 318 (510)
Q Consensus 239 kl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~ 318 (510)
.+.... ..+..|+.+++... +. +..+|+|++..
T Consensus 210 ~l~~~~-----------~~~~~l~~~~n~~~------~~----------------~~~iiits~~~-------------- 242 (405)
T TIGR00362 210 FLAGKE-----------RTQEEFFHTFNALH------EN----------------GKQIVLTSDRP-------------- 242 (405)
T ss_pred hhcCCH-----------HHHHHHHHHHHHHH------HC----------------CCCEEEecCCC--------------
Confidence 986432 25667777775210 01 11123333310
Q ss_pred CCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccC--ceEecCCCCHHHHHHHHhchhHHHHHHHHH
Q 038067 319 IGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFP--ILVSLSALNEDQLVQVLMEPKNALGRQYKK 396 (510)
Q Consensus 319 ~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~--~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~ 396 (510)
|.++ ..+.+.+.+|+. .++.|.+++.+++.+|++...
T Consensus 243 ------------------------------p~~l--~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~--------- 281 (405)
T TIGR00362 243 ------------------------------PKEL--PGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKA--------- 281 (405)
T ss_pred ------------------------------HHHH--hhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHH---------
Confidence 1111 125667889996 479999999999999997521
Q ss_pred HHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHH
Q 038067 397 MFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAM 441 (510)
Q Consensus 397 ~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l 441 (510)
. ...+.++++++++|++.. ..+.|.|..+|.++...+.
T Consensus 282 --~--~~~~~l~~e~l~~ia~~~---~~~~r~l~~~l~~l~~~a~ 319 (405)
T TIGR00362 282 --E--EEGLELPDEVLEFIAKNI---RSNVRELEGALNRLLAYAS 319 (405)
T ss_pred --H--HcCCCCCHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHH
Confidence 1 134678999999999874 5568999999998776554
No 147
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.36 E-value=1.1e-11 Score=128.78 Aligned_cols=165 Identities=24% Similarity=0.378 Sum_probs=106.0
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhCCC------------------------eEEEeccccccccccccchhhHHHHHHH
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVNVP------------------------FTITDATALTQAGYVGEDAESVLYKLLA 218 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~~p------------------------~~~~~~s~l~~~gy~G~~~~~~l~~l~~ 218 (510)
+..+||+||||+|||++|+++++.+..+ ++.++... . .. ...++.++.
T Consensus 36 ~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~~~~-----~--~~-~~~~~~l~~ 107 (355)
T TIGR02397 36 AHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEIDAAS-----N--NG-VDDIREILD 107 (355)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeeccc-----c--CC-HHHHHHHHH
Confidence 3568999999999999999999998422 12222211 0 01 122344444
Q ss_pred hhchhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceee
Q 038067 219 AADFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFI 298 (510)
Q Consensus 219 ~~~~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI 298 (510)
.....-..+...||+|||+|.+... .++.|++.+|. ...+++||
T Consensus 108 ~~~~~p~~~~~~vviidea~~l~~~-------------~~~~Ll~~le~-----------------------~~~~~~lI 151 (355)
T TIGR02397 108 NVKYAPSSGKYKVYIIDEVHMLSKS-------------AFNALLKTLEE-----------------------PPEHVVFI 151 (355)
T ss_pred HHhcCcccCCceEEEEeChhhcCHH-------------HHHHHHHHHhC-----------------------CccceeEE
Confidence 3321112245569999999998654 58899999973 01234455
Q ss_pred cCCCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHH
Q 038067 299 CGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQ 378 (510)
Q Consensus 299 ~tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~ee 378 (510)
++++. .+ .+.+.+.+|+. .+.|.+++.++
T Consensus 152 l~~~~--~~------------------------------------------------~l~~~l~sr~~-~~~~~~~~~~~ 180 (355)
T TIGR02397 152 LATTE--PH------------------------------------------------KIPATILSRCQ-RFDFKRIPLED 180 (355)
T ss_pred EEeCC--HH------------------------------------------------HHHHHHHhhee-EEEcCCCCHHH
Confidence 54431 00 13456777874 56999999999
Q ss_pred HHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHH
Q 038067 379 LVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILT 438 (510)
Q Consensus 379 l~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~ 438 (510)
+.+++...+ ...+ +.++++++..|++.+ +++.|.+.+.+++...
T Consensus 181 l~~~l~~~~-----------~~~g--~~i~~~a~~~l~~~~---~g~~~~a~~~lekl~~ 224 (355)
T TIGR02397 181 IVERLKKIL-----------DKEG--IKIEDEALELIARAA---DGSLRDALSLLDQLIS 224 (355)
T ss_pred HHHHHHHHH-----------HHcC--CCCCHHHHHHHHHHc---CCChHHHHHHHHHHHh
Confidence 988887421 1223 467899999999875 4567888888887654
No 148
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.35 E-value=3.5e-12 Score=136.87 Aligned_cols=172 Identities=22% Similarity=0.357 Sum_probs=122.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhCC-------CeEEEe-cccccccccc--------ccchhhHHHHHHHhhchhHHHh
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVNV-------PFTITD-ATALTQAGYV--------GEDAESVLYKLLAAADFDVEAA 227 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~~-------p~~~~~-~s~l~~~gy~--------G~~~~~~l~~l~~~~~~~~~~~ 227 (510)
...||.||.|||||++||.+|+.++. |+..+. |..+....++ ....-..++++.++..+.-.+.
T Consensus 39 hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ 118 (515)
T COG2812 39 HAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEG 118 (515)
T ss_pred hhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccc
Confidence 46999999999999999999999953 222221 1122210010 0011223566666655554566
Q ss_pred cCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchH
Q 038067 228 QRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLE 307 (510)
Q Consensus 228 ~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~ 307 (510)
...|.+|||++-+... .+++||+-||. ..++++||++++..
T Consensus 119 ryKVyiIDEvHMLS~~-------------afNALLKTLEE-----------------------PP~hV~FIlATTe~--- 159 (515)
T COG2812 119 RYKVYIIDEVHMLSKQ-------------AFNALLKTLEE-----------------------PPSHVKFILATTEP--- 159 (515)
T ss_pred cceEEEEecHHhhhHH-------------HHHHHhccccc-----------------------CccCeEEEEecCCc---
Confidence 7789999999998765 79999999984 44678899887611
Q ss_pred HHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchh
Q 038067 308 KTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPK 387 (510)
Q Consensus 308 ~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~ 387 (510)
..+++-+++|+... .|..++.+++..-+..
T Consensus 160 -----------------------------------------------~Kip~TIlSRcq~f-~fkri~~~~I~~~L~~-- 189 (515)
T COG2812 160 -----------------------------------------------QKIPNTILSRCQRF-DFKRLDLEEIAKHLAA-- 189 (515)
T ss_pred -----------------------------------------------CcCchhhhhccccc-cccCCCHHHHHHHHHH--
Confidence 12666889999775 9999999988777763
Q ss_pred HHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHH
Q 038067 388 NALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILT 438 (510)
Q Consensus 388 ~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~ 438 (510)
+. ....+.++++++..|++.+ .++.|...++++..+.
T Consensus 190 --i~---------~~E~I~~e~~aL~~ia~~a---~Gs~RDalslLDq~i~ 226 (515)
T COG2812 190 --IL---------DKEGINIEEDALSLIARAA---EGSLRDALSLLDQAIA 226 (515)
T ss_pred --HH---------HhcCCccCHHHHHHHHHHc---CCChhhHHHHHHHHHH
Confidence 21 2445778999999999987 7788999888887663
No 149
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.35 E-value=1.7e-11 Score=140.74 Aligned_cols=168 Identities=26% Similarity=0.352 Sum_probs=115.7
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh----------CCCeEEEeccccc-cccccccchhhHHHHHHHhhchhHHHhcCc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV----------NVPFTITDATALT-QAGYVGEDAESVLYKLLAAADFDVEAAQRG 230 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l----------~~p~~~~~~s~l~-~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~ 230 (510)
.+.|++|+||||||||++|+.+|+.+ +.+++.+|++.+. ...|.|+- +..+..++... ....+.
T Consensus 199 ~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~-e~rl~~i~~~~----~~~~~~ 273 (821)
T CHL00095 199 TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEF-EERLKRIFDEI----QENNNI 273 (821)
T ss_pred ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHH-HHHHHHHHHHH----HhcCCe
Confidence 55799999999999999999999876 3678899988765 34577753 56667776654 234567
Q ss_pred EEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHH
Q 038067 231 IVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTI 310 (510)
Q Consensus 231 Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i 310 (510)
||||||||.+..+....+.. .+.+.|...|..+ .+.+|.+++..+..+++
T Consensus 274 ILfiDEih~l~~~g~~~g~~-----~~a~lLkp~l~rg-------------------------~l~~IgaTt~~ey~~~i 323 (821)
T CHL00095 274 ILVIDEVHTLIGAGAAEGAI-----DAANILKPALARG-------------------------ELQCIGATTLDEYRKHI 323 (821)
T ss_pred EEEEecHHHHhcCCCCCCcc-----cHHHHhHHHHhCC-------------------------CcEEEEeCCHHHHHHHH
Confidence 99999999998654322211 3677787787522 23455555533322221
Q ss_pred HhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHH
Q 038067 311 SERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNAL 390 (510)
Q Consensus 311 ~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l 390 (510)
. ..|.|.+||.. |.+..++.++...|++. +
T Consensus 324 e---------------------------------------------~D~aL~rRf~~-I~v~ep~~~e~~aILr~----l 353 (821)
T CHL00095 324 E---------------------------------------------KDPALERRFQP-VYVGEPSVEETIEILFG----L 353 (821)
T ss_pred h---------------------------------------------cCHHHHhcceE-EecCCCCHHHHHHHHHH----H
Confidence 1 45788999976 58889999999999874 4
Q ss_pred HHHHHHHHhcCCceeeeCHHHHHHHHHhh
Q 038067 391 GRQYKKMFSMNNVKLHFTDDALRLIAKKA 419 (510)
Q Consensus 391 ~~~~~~~~~~~~~~l~is~~al~~La~~~ 419 (510)
...|... .+ +.++++++..+++.+
T Consensus 354 ~~~~e~~---~~--v~i~deal~~i~~ls 377 (821)
T CHL00095 354 RSRYEKH---HN--LSISDKALEAAAKLS 377 (821)
T ss_pred HHHHHHH---cC--CCCCHHHHHHHHHHh
Confidence 4444432 22 338999999888865
No 150
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.35 E-value=1.2e-11 Score=136.50 Aligned_cols=171 Identities=26% Similarity=0.320 Sum_probs=110.1
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEe-------------cccccc-----------ccccccchhhHHHHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITD-------------ATALTQ-----------AGYVGEDAESVLYKLL 217 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~-------------~s~l~~-----------~gy~G~~~~~~l~~l~ 217 (510)
.+..+||+||+|+|||++|+.+|+.++......+ |..+.. ....| -..+++++
T Consensus 45 i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~g---vd~IReIi 121 (598)
T PRK09111 45 IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTG---VDDIREII 121 (598)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCCceEEecccccCC---HHHHHHHH
Confidence 3457999999999999999999999853211100 111100 00111 12344444
Q ss_pred HhhchhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCcee
Q 038067 218 AAADFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILF 297 (510)
Q Consensus 218 ~~~~~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilf 297 (510)
......-..+...|++|||+|.+... .++.||+.||. ...++.|
T Consensus 122 e~~~~~P~~a~~KVvIIDEad~Ls~~-------------a~naLLKtLEe-----------------------Pp~~~~f 165 (598)
T PRK09111 122 ESVRYRPVSARYKVYIIDEVHMLSTA-------------AFNALLKTLEE-----------------------PPPHVKF 165 (598)
T ss_pred HHHHhchhcCCcEEEEEEChHhCCHH-------------HHHHHHHHHHh-----------------------CCCCeEE
Confidence 33322222356689999999998754 59999999983 1123445
Q ss_pred ecCCCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHH
Q 038067 298 ICGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNED 377 (510)
Q Consensus 298 I~tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~e 377 (510)
|++++.. + .+.+.+++|+. ++.|.+++.+
T Consensus 166 Il~tte~--~------------------------------------------------kll~tI~SRcq-~~~f~~l~~~ 194 (598)
T PRK09111 166 IFATTEI--R------------------------------------------------KVPVTVLSRCQ-RFDLRRIEAD 194 (598)
T ss_pred EEEeCCh--h------------------------------------------------hhhHHHHhhee-EEEecCCCHH
Confidence 5543310 0 14456788985 5699999999
Q ss_pred HHHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHH
Q 038067 378 QLVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILT 438 (510)
Q Consensus 378 el~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~ 438 (510)
++.+.+...+ ... .+.+++++++.|++.+ +++.|.+.+.+++.+.
T Consensus 195 el~~~L~~i~-----------~ke--gi~i~~eAl~lIa~~a---~Gdlr~al~~Ldkli~ 239 (598)
T PRK09111 195 VLAAHLSRIA-----------AKE--GVEVEDEALALIARAA---EGSVRDGLSLLDQAIA 239 (598)
T ss_pred HHHHHHHHHH-----------HHc--CCCCCHHHHHHHHHHc---CCCHHHHHHHHHHHHh
Confidence 9988886421 122 4557999999999986 5678999999887653
No 151
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.35 E-value=5.9e-12 Score=134.58 Aligned_cols=201 Identities=17% Similarity=0.277 Sum_probs=130.5
Q ss_pred ccCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccccc----cccccchhhHHHHHHHhhchhHHHhcCcEEE
Q 038067 161 LEKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALTQA----GYVGEDAESVLYKLLAAADFDVEAAQRGIVY 233 (510)
Q Consensus 161 ~~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~~~----gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~ 233 (510)
....+++++|++||||+++|++++... +.||+.++|+.+... -.+|+.. +.+........+.+..+.+|+||
T Consensus 160 ~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~-~~~~~~~~~~~g~~~~a~~gtl~ 238 (441)
T PRK10365 160 PSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEK-GAFTGADKRREGRFVEADGGTLF 238 (441)
T ss_pred CCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCC-CCcCCCCcCCCCceeECCCCEEE
Confidence 356789999999999999999999877 469999999987532 1122211 11111011112234556789999
Q ss_pred EcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhh
Q 038067 234 IDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISER 313 (510)
Q Consensus 234 iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~ 313 (510)
||||+.|+.. +|..|++.++.+.+. ..|... . ...++.+|++++. ++...+
T Consensus 239 ldei~~l~~~-------------~q~~l~~~l~~~~~~----~~~~~~-----~---~~~~~rii~~t~~-~~~~~~--- 289 (441)
T PRK10365 239 LDEIGDISPM-------------MQVRLLRAIQEREVQ----RVGSNQ-----T---ISVDVRLIAATHR-DLAAEV--- 289 (441)
T ss_pred EeccccCCHH-------------HHHHHHHHHccCcEE----eCCCCc-----e---eeeceEEEEeCCC-CHHHHH---
Confidence 9999999876 799999999855443 122111 1 1234556665541 221111
Q ss_pred cccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCc-eEecCCCCH--HHHHHHHhchhHHH
Q 038067 314 RQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPI-LVSLSALNE--DQLVQVLMEPKNAL 390 (510)
Q Consensus 314 ~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~-iv~f~~Ls~--eel~~Il~~~~~~l 390 (510)
....|++.|..|+.. .|.++||.+ +|+..++...+
T Consensus 290 ---------------------------------------~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l--- 327 (441)
T PRK10365 290 ---------------------------------------NAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFL--- 327 (441)
T ss_pred ---------------------------------------HcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHH---
Confidence 123488889999975 477888875 57777776533
Q ss_pred HHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHH
Q 038067 391 GRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILT 438 (510)
Q Consensus 391 ~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~ 438 (510)
.++.... ......+++++++.|.. |.|.++.|+|++++++.+.
T Consensus 328 -~~~~~~~--~~~~~~~~~~a~~~L~~--~~wpgN~reL~~~~~~~~~ 370 (441)
T PRK10365 328 -QRFAERN--RKAVKGFTPQAMDLLIH--YDWPGNIRELENAVERAVV 370 (441)
T ss_pred -HHHHHHh--CCCCCCcCHHHHHHHHh--CCCCCHHHHHHHHHHHHHH
Confidence 3333221 12234589999999998 5667779999999999775
No 152
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.34 E-value=1.3e-11 Score=141.92 Aligned_cols=144 Identities=22% Similarity=0.276 Sum_probs=99.3
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh----------CCCeEEEecccccc-ccccccchhhHHHHHHHhhchhHHHhcCc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV----------NVPFTITDATALTQ-AGYVGEDAESVLYKLLAAADFDVEAAQRG 230 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l----------~~p~~~~~~s~l~~-~gy~G~~~~~~l~~l~~~~~~~~~~~~~~ 230 (510)
.+.|++|+||||||||++|+.+|..+ +.+++.++++.+.. ..|.|.- +..+..++.... ....+.
T Consensus 198 ~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~-e~~lk~~~~~~~---~~~~~~ 273 (857)
T PRK10865 198 TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEF-EERLKGVLNDLA---KQEGNV 273 (857)
T ss_pred CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhh-HHHHHHHHHHHH---HcCCCe
Confidence 55789999999999999999999987 67888888887652 3466653 556666665421 123567
Q ss_pred EEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHH
Q 038067 231 IVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTI 310 (510)
Q Consensus 231 Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i 310 (510)
||||||++.+..+....++. ..++.|+.+++. ..+.+|.+++..+..+++
T Consensus 274 ILfIDEih~l~~~~~~~~~~-----d~~~~lkp~l~~-------------------------g~l~~IgaTt~~e~r~~~ 323 (857)
T PRK10865 274 ILFIDELHTMVGAGKADGAM-----DAGNMLKPALAR-------------------------GELHCVGATTLDEYRQYI 323 (857)
T ss_pred EEEEecHHHhccCCCCccch-----hHHHHhcchhhc-------------------------CCCeEEEcCCCHHHHHHh
Confidence 99999999998664333222 368888877752 234556665533322211
Q ss_pred HhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhc
Q 038067 311 SERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLME 385 (510)
Q Consensus 311 ~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~ 385 (510)
...|+|.+||+.+ .+..++.++...|++.
T Consensus 324 ---------------------------------------------~~d~al~rRf~~i-~v~eP~~~~~~~iL~~ 352 (857)
T PRK10865 324 ---------------------------------------------EKDAALERRFQKV-FVAEPSVEDTIAILRG 352 (857)
T ss_pred ---------------------------------------------hhcHHHHhhCCEE-EeCCCCHHHHHHHHHH
Confidence 1578999999865 5666688998888864
No 153
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.34 E-value=8.3e-12 Score=121.68 Aligned_cols=175 Identities=16% Similarity=0.325 Sum_probs=108.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHHh-----CCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchh
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIV-----NVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVD 238 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l-----~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEid 238 (510)
..++|+||+|+|||+|..++++.+ +..++++++.++... +...-..+.+..+.. .-..-.+|+||+++
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~-~~~~~~~~~~~~~~~------~~~~~DlL~iDDi~ 107 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIRE-FADALRDGEIEEFKD------RLRSADLLIIDDIQ 107 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHH-HHHHHHTTSHHHHHH------HHCTSSEEEEETGG
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHH-HHHHHHcccchhhhh------hhhcCCEEEEecch
Confidence 459999999999999999999876 467888888877532 111000011111111 11244699999999
Q ss_pred hhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCC
Q 038067 239 KIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSS 318 (510)
Q Consensus 239 kl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~ 318 (510)
.+.... ..|..|+.+++... . .+-.+|+|++.
T Consensus 108 ~l~~~~-----------~~q~~lf~l~n~~~---------------------~-~~k~li~ts~~--------------- 139 (219)
T PF00308_consen 108 FLAGKQ-----------RTQEELFHLFNRLI---------------------E-SGKQLILTSDR--------------- 139 (219)
T ss_dssp GGTTHH-----------HHHHHHHHHHHHHH---------------------H-TTSEEEEEESS---------------
T ss_pred hhcCch-----------HHHHHHHHHHHHHH---------------------h-hCCeEEEEeCC---------------
Confidence 987542 26888888886211 0 11123333320
Q ss_pred CCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCc--eEecCCCCHHHHHHHHhchhHHHHHHHHH
Q 038067 319 IGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPI--LVSLSALNEDQLVQVLMEPKNALGRQYKK 396 (510)
Q Consensus 319 ~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~--iv~f~~Ls~eel~~Il~~~~~~l~~~~~~ 396 (510)
.|.++ ..+.|.+.+|+.. ++.+.+++.+++.+|+.+..
T Consensus 140 -----------------------------~P~~l--~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a--------- 179 (219)
T PF00308_consen 140 -----------------------------PPSEL--SGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKA--------- 179 (219)
T ss_dssp ------------------------------TTTT--TTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHH---------
T ss_pred -----------------------------CCccc--cccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHH---------
Confidence 12222 1377889999954 89999999999999997521
Q ss_pred HHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHH
Q 038067 397 MFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEA 440 (510)
Q Consensus 397 ~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~ 440 (510)
. ...+.++++++++|++.. ..+.|.|..++.++...+
T Consensus 180 --~--~~~~~l~~~v~~~l~~~~---~~~~r~L~~~l~~l~~~~ 216 (219)
T PF00308_consen 180 --K--ERGIELPEEVIEYLARRF---RRDVRELEGALNRLDAYA 216 (219)
T ss_dssp --H--HTT--S-HHHHHHHHHHT---TSSHHHHHHHHHHHHHHH
T ss_pred --H--HhCCCCcHHHHHHHHHhh---cCCHHHHHHHHHHHHHHh
Confidence 2 233558999999999985 556899999999876543
No 154
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=1.4e-11 Score=136.69 Aligned_cols=169 Identities=24% Similarity=0.360 Sum_probs=107.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhCCCeEE----Eecc--------------ccccc-cccccchhhHHHHHHHhhchhH
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVNVPFTI----TDAT--------------ALTQA-GYVGEDAESVLYKLLAAADFDV 224 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~----~~~s--------------~l~~~-gy~G~~~~~~l~~l~~~~~~~~ 224 (510)
.++||+||+|+|||++|+++|+.++..... ..|. ++... ...... -..+++++......-
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~~~~~~~-vd~IReii~~a~~~p 117 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIEIDAASNTG-VDNIRELIERAQFAP 117 (620)
T ss_pred ceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEEEEeccccCC-HHHHHHHHHHHhhCh
Confidence 579999999999999999999998531100 0010 01000 000111 234555554432222
Q ss_pred HHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCcc
Q 038067 225 EAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFV 304 (510)
Q Consensus 225 ~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~ 304 (510)
..+...|++|||+|+|... .++.||+.||. ...+++||++++..
T Consensus 118 ~~~~~KViIIDEad~Lt~~-------------a~naLLK~LEe-----------------------Pp~~tvfIL~t~~~ 161 (620)
T PRK14948 118 VQARWKVYVIDECHMLSTA-------------AFNALLKTLEE-----------------------PPPRVVFVLATTDP 161 (620)
T ss_pred hcCCceEEEEECccccCHH-------------HHHHHHHHHhc-----------------------CCcCeEEEEEeCCh
Confidence 2345679999999998754 69999999983 11235566554410
Q ss_pred chHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHh
Q 038067 305 GLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLM 384 (510)
Q Consensus 305 ~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~ 384 (510)
..+.|.+++|+.. +.|.+++.+++...+.
T Consensus 162 --------------------------------------------------~~llpTIrSRc~~-~~f~~l~~~ei~~~L~ 190 (620)
T PRK14948 162 --------------------------------------------------QRVLPTIISRCQR-FDFRRIPLEAMVQHLS 190 (620)
T ss_pred --------------------------------------------------hhhhHHHHhheeE-EEecCCCHHHHHHHHH
Confidence 1256678889855 5999999988877765
Q ss_pred chhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHH
Q 038067 385 EPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENI 436 (510)
Q Consensus 385 ~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~ 436 (510)
. +. ... .+.++++++..|++.+ +++.|.+.+.++++
T Consensus 191 ~----ia-------~ke--gi~is~~al~~La~~s---~G~lr~A~~lLekl 226 (620)
T PRK14948 191 E----IA-------EKE--SIEIEPEALTLVAQRS---QGGLRDAESLLDQL 226 (620)
T ss_pred H----HH-------HHh--CCCCCHHHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 3 11 112 3457899999999986 56678888888864
No 155
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.34 E-value=1.7e-11 Score=132.30 Aligned_cols=231 Identities=18% Similarity=0.265 Sum_probs=127.4
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCC--CeEEEecccccc-------------cccc-ccchhhHHHHHHH----hhc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNV--PFTITDATALTQ-------------AGYV-GEDAESVLYKLLA----AAD 221 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~--p~~~~~~s~l~~-------------~gy~-G~~~~~~l~~l~~----~~~ 221 (510)
...+++|+||||+|||++++.++..+.. .-..++.+.+.. .-|. .+. ......++. ..+
T Consensus 209 ~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~-~~s~~~l~GGg~~~~p 287 (506)
T PRK09862 209 GGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHH-SASLTAMVGGGAIPGP 287 (506)
T ss_pred CCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCc-cchHHHHhCCCceehh
Confidence 4578999999999999999999987721 111222222210 0010 000 000011111 224
Q ss_pred hhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCC
Q 038067 222 FDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGG 301 (510)
Q Consensus 222 ~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg 301 (510)
+.+..+++|||||||++.+... +|+.|++.||.+.++|. +.+.... ...++.+|+|.
T Consensus 288 G~l~~A~gGvLfLDEi~e~~~~-------------~~~~L~~~LE~g~v~I~--r~g~~~~--------~pa~f~lIAa~ 344 (506)
T PRK09862 288 GEISLAHNGVLFLDELPEFERR-------------TLDALREPIESGQIHLS--RTRAKIT--------YPARFQLVAAM 344 (506)
T ss_pred hHhhhccCCEEecCCchhCCHH-------------HHHHHHHHHHcCcEEEe--cCCccee--------ccCCEEEEEee
Confidence 5677889999999999998765 89999999998887765 4443332 23455556555
Q ss_pred CccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHH
Q 038067 302 AFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQ 381 (510)
Q Consensus 302 ~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~ 381 (510)
| .+.+|+..... +. +......+++. .+++++++|||..+.+++++.+++.+
T Consensus 345 N-------------P~pcG~~~~~~--c~----c~~~~~~~Y~~----------~ls~plLDRfdL~v~v~~~~~~~l~~ 395 (506)
T PRK09862 345 N-------------PSPTGHYQGNH--NR----CTPEQTLRYLN----------RLSGPFLDRFDLSLEIPLPPPGILSK 395 (506)
T ss_pred c-------------CccceecCCCC--CC----cCHHHHHHHHh----------hCCHhHHhhccEEEEeCCCCHHHHhc
Confidence 5 12244332111 11 11111112222 37889999999999999886554432
Q ss_pred ----------HHhchhHHHHHHHHHHHhcCCc---------eeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHHh
Q 038067 382 ----------VLMEPKNALGRQYKKMFSMNNV---------KLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMF 442 (510)
Q Consensus 382 ----------Il~~~~~~l~~~~~~~~~~~~~---------~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~ 442 (510)
|.++....-..|. .+...-+. ...+++++.+.+.+.....+..+|...+++. +...+.
T Consensus 396 ~~~~~ess~~i~~rV~~ar~~q~-~r~~~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLr--vARTiA 472 (506)
T PRK09862 396 TVVPGESSATVKQRVMAARERQF-KRQNKLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLK--VARTIA 472 (506)
T ss_pred ccCCCCChHHHHHHHhhHHHHHH-HHHHHHhcccCHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHH--HHHHHH
Confidence 1111000000111 11000011 1346777777666554455667899998887 445566
Q ss_pred cCcCCC
Q 038067 443 EIPETK 448 (510)
Q Consensus 443 ~~~~~~ 448 (510)
++.+.+
T Consensus 473 DL~g~~ 478 (506)
T PRK09862 473 DIDQSD 478 (506)
T ss_pred HHcCCC
Confidence 665543
No 156
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.34 E-value=1.4e-11 Score=129.91 Aligned_cols=133 Identities=20% Similarity=0.309 Sum_probs=83.0
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhCCCeE-EEecc--------------ccc--cc-cccccchhhHHHHHHHhhchhH
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVNVPFT-ITDAT--------------ALT--QA-GYVGEDAESVLYKLLAAADFDV 224 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~-~~~~s--------------~l~--~~-gy~G~~~~~~l~~l~~~~~~~~ 224 (510)
++.+||+||+|+|||++|+.+|+.+...-. ...|. ++. .+ + .... -..++.+++.....-
T Consensus 36 ~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~~-~~i~-i~~iR~l~~~~~~~p 113 (394)
T PRK07940 36 THAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVRVVAPEG-LSIG-VDEVRELVTIAARRP 113 (394)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEecccc-ccCC-HHHHHHHHHHHHhCc
Confidence 467999999999999999999998733210 00010 010 00 0 0001 122455554432211
Q ss_pred HHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCcc
Q 038067 225 EAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFV 304 (510)
Q Consensus 225 ~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~ 304 (510)
..+...|+||||+|+|... .++.||+.||. ...+.+||++++..
T Consensus 114 ~~~~~kViiIDead~m~~~-------------aanaLLk~LEe-----------------------p~~~~~fIL~a~~~ 157 (394)
T PRK07940 114 STGRWRIVVIEDADRLTER-------------AANALLKAVEE-----------------------PPPRTVWLLCAPSP 157 (394)
T ss_pred ccCCcEEEEEechhhcCHH-------------HHHHHHHHhhc-----------------------CCCCCeEEEEECCh
Confidence 2345579999999999765 58999999983 11234455544410
Q ss_pred chHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHh
Q 038067 305 GLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLM 384 (510)
Q Consensus 305 ~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~ 384 (510)
..+.|.+++|+- .+.|.+++.+++.+.+.
T Consensus 158 --------------------------------------------------~~llpTIrSRc~-~i~f~~~~~~~i~~~L~ 186 (394)
T PRK07940 158 --------------------------------------------------EDVLPTIRSRCR-HVALRTPSVEAVAEVLV 186 (394)
T ss_pred --------------------------------------------------HHChHHHHhhCe-EEECCCCCHHHHHHHHH
Confidence 126788999995 56999999999887775
No 157
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.34 E-value=4.3e-11 Score=126.20 Aligned_cols=187 Identities=22% Similarity=0.241 Sum_probs=113.5
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh-----CCCeEEEeccccccc------------c----ccccchhhHHHHHHHhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV-----NVPFTITDATALTQA------------G----YVGEDAESVLYKLLAAA 220 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l-----~~p~~~~~~s~l~~~------------g----y~G~~~~~~l~~l~~~~ 220 (510)
.+.+++++||||||||++++.+++.+ +.+++.++|...... + ..+......+..+.+.
T Consensus 54 ~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~- 132 (394)
T PRK00411 54 RPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEY- 132 (394)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHH-
Confidence 44679999999999999999999887 467889998765321 0 0111111111111111
Q ss_pred chhHH-HhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeec
Q 038067 221 DFDVE-AAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFIC 299 (510)
Q Consensus 221 ~~~~~-~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~ 299 (510)
+. ...+.||+|||+|.+.... +..++..|++.++. ...+++.+|+
T Consensus 133 ---l~~~~~~~viviDE~d~l~~~~---------~~~~l~~l~~~~~~----------------------~~~~~v~vI~ 178 (394)
T PRK00411 133 ---LDERDRVLIVALDDINYLFEKE---------GNDVLYSLLRAHEE----------------------YPGARIGVIG 178 (394)
T ss_pred ---HHhcCCEEEEEECCHhHhhccC---------CchHHHHHHHhhhc----------------------cCCCeEEEEE
Confidence 11 1234699999999987211 11256666666641 0123566777
Q ss_pred CCCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccC-ceEecCCCCHHH
Q 038067 300 GGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFP-ILVSLSALNEDQ 378 (510)
Q Consensus 300 tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~-~iv~f~~Ls~ee 378 (510)
+|+..++.+ .+.|.+.+|+. ..|.|+|++.++
T Consensus 179 i~~~~~~~~-----------------------------------------------~l~~~~~s~~~~~~i~f~py~~~e 211 (394)
T PRK00411 179 ISSDLTFLY-----------------------------------------------ILDPRVKSVFRPEEIYFPPYTADE 211 (394)
T ss_pred EECCcchhh-----------------------------------------------hcCHHHHhcCCcceeecCCCCHHH
Confidence 776221110 13445556663 468999999999
Q ss_pred HHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHH
Q 038067 379 LVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAM 441 (510)
Q Consensus 379 l~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l 441 (510)
+.+|+...+ ..-+ ..-.+++++++.+++.+....+++|.+..++...+..+.
T Consensus 212 ~~~il~~r~-------~~~~----~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~ 263 (394)
T PRK00411 212 IFDILKDRV-------EEGF----YPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAE 263 (394)
T ss_pred HHHHHHHHH-------Hhhc----ccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 999997532 1101 122478999999998764445567877777766554443
No 158
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.33 E-value=2.8e-11 Score=126.28 Aligned_cols=190 Identities=21% Similarity=0.220 Sum_probs=112.5
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhC---------CCeEEEecccccccc---------cc--cc-------chhhHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVN---------VPFTITDATALTQAG---------YV--GE-------DAESVLY 214 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~---------~p~~~~~~s~l~~~g---------y~--G~-------~~~~~l~ 214 (510)
.+.+++++||||||||++++.+++.+. .+++.++|....... .. |. +....+.
T Consensus 39 ~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 118 (365)
T TIGR02928 39 RPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFR 118 (365)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHH
Confidence 346899999999999999999998762 467888987654210 00 11 1111112
Q ss_pred HHHHhhchhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCC
Q 038067 215 KLLAAADFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKD 294 (510)
Q Consensus 215 ~l~~~~~~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsn 294 (510)
.++... .....+.||+|||+|.+.... ..+...|+++.+. . .....+
T Consensus 119 ~l~~~l---~~~~~~~vlvIDE~d~L~~~~----------~~~L~~l~~~~~~----------~----------~~~~~~ 165 (365)
T TIGR02928 119 RLYKEL---NERGDSLIIVLDEIDYLVGDD----------DDLLYQLSRARSN----------G----------DLDNAK 165 (365)
T ss_pred HHHHHH---HhcCCeEEEEECchhhhccCC----------cHHHHhHhccccc----------c----------CCCCCe
Confidence 221111 012345689999999996321 0134444444210 0 012245
Q ss_pred ceeecCCCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccC-ceEecCC
Q 038067 295 ILFICGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFP-ILVSLSA 373 (510)
Q Consensus 295 ilfI~tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~-~iv~f~~ 373 (510)
+.+|+.+|...+. ..+.|.+.+|+. ..+.|+|
T Consensus 166 v~lI~i~n~~~~~-----------------------------------------------~~l~~~~~s~~~~~~i~f~p 198 (365)
T TIGR02928 166 VGVIGISNDLKFR-----------------------------------------------ENLDPRVKSSLCEEEIIFPP 198 (365)
T ss_pred EEEEEEECCcchH-----------------------------------------------hhcCHHHhccCCcceeeeCC
Confidence 6667666622110 114455666774 5689999
Q ss_pred CCHHHHHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHHh
Q 038067 374 LNEDQLVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMF 442 (510)
Q Consensus 374 Ls~eel~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~ 442 (510)
++.+++.+|+...+.. . .....+++++++++++.+....+.+|....+++..+..+..
T Consensus 199 ~~~~e~~~il~~r~~~-------~----~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~ 256 (365)
T TIGR02928 199 YDAEELRDILENRAEK-------A----FYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAER 256 (365)
T ss_pred CCHHHHHHHHHHHHHh-------h----ccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 9999999999853210 0 01224789999988876544456688888888877655543
No 159
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.33 E-value=1.6e-11 Score=132.76 Aligned_cols=170 Identities=22% Similarity=0.366 Sum_probs=105.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhCC-------CeEEE-ecccccc---ccc--c-c---cchhhHHHHHHHhhchhHHH
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVNV-------PFTIT-DATALTQ---AGY--V-G---EDAESVLYKLLAAADFDVEA 226 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~~-------p~~~~-~~s~l~~---~gy--~-G---~~~~~~l~~l~~~~~~~~~~ 226 (510)
+.+||+||+|+|||++|+.+|+.++. |+-.+ +|..+.. +.+ + + .. -..++.+.....+.-..
T Consensus 39 hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eidaas~~g-vd~ir~I~~~~~~~P~~ 117 (486)
T PRK14953 39 HAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDAASNRG-IDDIRALRDAVSYTPIK 117 (486)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeCccCCC-HHHHHHHHHHHHhCccc
Confidence 45789999999999999999999852 11110 1111110 000 0 0 00 11123333222111123
Q ss_pred hcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccch
Q 038067 227 AQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGL 306 (510)
Q Consensus 227 ~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l 306 (510)
+...|++|||+|.+... .++.|++.|+. ...+++||++++. +
T Consensus 118 ~~~KVvIIDEad~Lt~~-------------a~naLLk~LEe-----------------------pp~~~v~Il~tt~--~ 159 (486)
T PRK14953 118 GKYKVYIIDEAHMLTKE-------------AFNALLKTLEE-----------------------PPPRTIFILCTTE--Y 159 (486)
T ss_pred CCeeEEEEEChhhcCHH-------------HHHHHHHHHhc-----------------------CCCCeEEEEEECC--H
Confidence 45679999999998654 58999999983 1123345544330 0
Q ss_pred HHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhch
Q 038067 307 EKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEP 386 (510)
Q Consensus 307 ~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~ 386 (510)
+ .+.+.+.+|+. ++.|.+++.+++...+...
T Consensus 160 ~------------------------------------------------kl~~tI~SRc~-~i~f~~ls~~el~~~L~~i 190 (486)
T PRK14953 160 D------------------------------------------------KIPPTILSRCQ-RFIFSKPTKEQIKEYLKRI 190 (486)
T ss_pred H------------------------------------------------HHHHHHHHhce-EEEcCCCCHHHHHHHHHHH
Confidence 0 13446777886 5799999999998887641
Q ss_pred hHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHH
Q 038067 387 KNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENIL 437 (510)
Q Consensus 387 ~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l 437 (510)
+...+ +.+++++++.|++.+ +++.|.+.+.++.++
T Consensus 191 -----------~k~eg--i~id~~al~~La~~s---~G~lr~al~~Ldkl~ 225 (486)
T PRK14953 191 -----------CNEEK--IEYEEKALDLLAQAS---EGGMRDAASLLDQAS 225 (486)
T ss_pred -----------HHHcC--CCCCHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 12234 567999999999875 566899888888765
No 160
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=99.33 E-value=6.3e-12 Score=135.46 Aligned_cols=199 Identities=24% Similarity=0.349 Sum_probs=139.1
Q ss_pred hhhhccCceEEEEccCCChHHHHHHHHHHHh--CCCeEEEecccccc----ccccccchhhHHHHHHHhh-chhHHHhcC
Q 038067 157 EIVELEKSNVLLMGPTGSGKTLLAKTLARIV--NVPFTITDATALTQ----AGYVGEDAESVLYKLLAAA-DFDVEAAQR 229 (510)
Q Consensus 157 ~~~~~~~~~vLL~GPpGtGKT~lAr~lA~~l--~~p~~~~~~s~l~~----~gy~G~~~~~~l~~l~~~~-~~~~~~~~~ 229 (510)
+++.....++++.|.|||||-.+||++++.. ..||+-++|..+.+ +.++|+. .+.++.++.+. .+.++++.+
T Consensus 330 ~rv~~~~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~-~GafTga~~kG~~g~~~~A~g 408 (606)
T COG3284 330 ERVAATDLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYV-AGAFTGARRKGYKGKLEQADG 408 (606)
T ss_pred HHHhhcCCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccC-ccccccchhccccccceecCC
Confidence 4555677889999999999999999999888 46999999997753 3466665 44555544433 345677899
Q ss_pred cEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHH
Q 038067 230 GIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKT 309 (510)
Q Consensus 230 ~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~ 309 (510)
|.+|+|||..|+-+ .|..||++|+.+.++ .-|+.+ - .| .+-+|++++ .+|...
T Consensus 409 GtlFldeIgd~p~~-------------~Qs~LLrVl~e~~v~----p~g~~~-~-----~v---dirvi~ath-~dl~~l 461 (606)
T COG3284 409 GTLFLDEIGDMPLA-------------LQSRLLRVLQEGVVT----PLGGTR-I-----KV---DIRVIAATH-RDLAQL 461 (606)
T ss_pred CccHHHHhhhchHH-------------HHHHHHHHHhhCcee----ccCCcc-e-----eE---EEEEEeccC-cCHHHH
Confidence 99999999999876 899999999977665 344433 2 22 233444443 355555
Q ss_pred HHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCc-eEecCCCCH-HHHHHHHhchh
Q 038067 310 ISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPI-LVSLSALNE-DQLVQVLMEPK 387 (510)
Q Consensus 310 i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~-iv~f~~Ls~-eel~~Il~~~~ 387 (510)
+++ ..|+..|..|+.. .|.++||.+ .|....+.
T Consensus 462 v~~------------------------------------------g~fredLyyrL~~~~i~lP~lr~R~d~~~~l~--- 496 (606)
T COG3284 462 VEQ------------------------------------------GRFREDLYYRLNAFVITLPPLRERSDRIPLLD--- 496 (606)
T ss_pred HHc------------------------------------------CCchHHHHHHhcCeeeccCchhcccccHHHHH---
Confidence 442 2377788888866 578888865 22222221
Q ss_pred HHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHH
Q 038067 388 NALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENIL 437 (510)
Q Consensus 388 ~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l 437 (510)
++.+ ......+.++++++..|.. |.|.++.|+|.++|+++.
T Consensus 497 -----~~~~--~~~~~~~~l~~~~~~~l~~--~~WPGNirel~~v~~~~~ 537 (606)
T COG3284 497 -----RILK--RENDWRLQLDDDALARLLA--YRWPGNIRELDNVIERLA 537 (606)
T ss_pred -----HHHH--HccCCCccCCHHHHHHHHh--CCCCCcHHHHHHHHHHHH
Confidence 1111 1123668899999999987 667788999999999865
No 161
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.33 E-value=2.1e-11 Score=134.84 Aligned_cols=173 Identities=21% Similarity=0.303 Sum_probs=107.3
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhCCCeEE----------Eecc------ccc---ccc---ccccc--hhhHHHHHHH
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVNVPFTI----------TDAT------ALT---QAG---YVGED--AESVLYKLLA 218 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~----------~~~s------~l~---~~g---y~G~~--~~~~l~~l~~ 218 (510)
++.+||+||+|||||++|+.+|+.++..-.. -.|. .+. ... +-|.+ .-..++.+..
T Consensus 38 ~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e 117 (620)
T PRK14954 38 GHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRE 117 (620)
T ss_pred CeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHH
Confidence 3569999999999999999999999542100 0010 000 000 11111 0123444433
Q ss_pred hhchhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceee
Q 038067 219 AADFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFI 298 (510)
Q Consensus 219 ~~~~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI 298 (510)
.....-..+...|++|||+|++... .++.||+.||. ....++||
T Consensus 118 ~~~~~P~~~~~KVvIIdEad~Lt~~-------------a~naLLK~LEe-----------------------Pp~~tv~I 161 (620)
T PRK14954 118 NVRYGPQKGRYRVYIIDEVHMLSTA-------------AFNAFLKTLEE-----------------------PPPHAIFI 161 (620)
T ss_pred HHHhhhhcCCCEEEEEeChhhcCHH-------------HHHHHHHHHhC-----------------------CCCCeEEE
Confidence 3311112345679999999998754 58999999983 11223444
Q ss_pred cCCCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHH
Q 038067 299 CGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQ 378 (510)
Q Consensus 299 ~tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~ee 378 (510)
++++. . ..+.+.+.+|.. ++.|.+++.++
T Consensus 162 L~t~~--~------------------------------------------------~kLl~TI~SRc~-~vef~~l~~~e 190 (620)
T PRK14954 162 FATTE--L------------------------------------------------HKIPATIASRCQ-RFNFKRIPLDE 190 (620)
T ss_pred EEeCC--h------------------------------------------------hhhhHHHHhhce-EEecCCCCHHH
Confidence 43330 0 124557788885 46999999999
Q ss_pred HHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHH
Q 038067 379 LVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILT 438 (510)
Q Consensus 379 l~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~ 438 (510)
+...+... +... .+.+++++++.|++.+ +++.|.+.+.+++++.
T Consensus 191 i~~~L~~i-----------~~~e--gi~I~~eal~~La~~s---~Gdlr~al~eLeKL~~ 234 (620)
T PRK14954 191 IQSQLQMI-----------CRAE--GIQIDADALQLIARKA---QGSMRDAQSILDQVIA 234 (620)
T ss_pred HHHHHHHH-----------HHHc--CCCCCHHHHHHHHHHh---CCCHHHHHHHHHHHHH
Confidence 88777531 1122 3557999999999986 5668888888887653
No 162
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.33 E-value=1e-11 Score=140.02 Aligned_cols=97 Identities=24% Similarity=0.255 Sum_probs=63.8
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhC-------CCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEE
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVN-------VPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYI 234 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~-------~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~i 234 (510)
...||||+|+||||||.+|+.+++... .++..+.++.... +.... .+ .+....+.+..+.+|+++|
T Consensus 491 gdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~--~~d~~-tG----~~~le~GaLvlAdgGtL~I 563 (915)
T PTZ00111 491 GIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIK--FNESD-NG----RAMIQPGAVVLANGGVCCI 563 (915)
T ss_pred CCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhh--hcccc-cC----cccccCCcEEEcCCCeEEe
Confidence 456999999999999999999999762 3444444433211 00000 00 0111122344577899999
Q ss_pred cchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCC
Q 038067 235 DEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPR 280 (510)
Q Consensus 235 DEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~ 280 (510)
||++++... .|..|+++||...+.|. ..|..
T Consensus 564 DEidkms~~-------------~Q~aLlEaMEqqtIsI~--KaGi~ 594 (915)
T PTZ00111 564 DELDKCHNE-------------SRLSLYEVMEQQTVTIA--KAGIV 594 (915)
T ss_pred cchhhCCHH-------------HHHHHHHHHhCCEEEEe--cCCcc
Confidence 999999766 79999999997777664 44433
No 163
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.33 E-value=1e-11 Score=133.59 Aligned_cols=176 Identities=17% Similarity=0.320 Sum_probs=112.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHHh-----CCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchh
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIV-----NVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVD 238 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l-----~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEid 238 (510)
.+++|+||||+|||+|++++++.+ +..++++++.++... +...-.......+.. .-....+|+||||+
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~-~~~~~~~~~~~~~~~------~~~~~dlLiiDDi~ 221 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTND-FVNALRNNTMEEFKE------KYRSVDVLLIDDIQ 221 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHH-HHHHHHcCcHHHHHH------HHhcCCEEEEehhh
Confidence 469999999999999999999987 455778888776421 111100001111111 11235699999999
Q ss_pred hhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCC
Q 038067 239 KIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSS 318 (510)
Q Consensus 239 kl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~ 318 (510)
.+.... ..++.|+.+++... +.+ .. +|+|++.
T Consensus 222 ~l~~~~-----------~~~~~l~~~~n~l~------~~~---------------~~-iiits~~--------------- 253 (450)
T PRK00149 222 FLAGKE-----------RTQEEFFHTFNALH------EAG---------------KQ-IVLTSDR--------------- 253 (450)
T ss_pred hhcCCH-----------HHHHHHHHHHHHHH------HCC---------------Cc-EEEECCC---------------
Confidence 986432 14666777665210 011 11 2223321
Q ss_pred CCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccC--ceEecCCCCHHHHHHHHhchhHHHHHHHHH
Q 038067 319 IGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFP--ILVSLSALNEDQLVQVLMEPKNALGRQYKK 396 (510)
Q Consensus 319 ~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~--~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~ 396 (510)
.|.++- ++.|.+.+||. .++.|.+++.+++.+|++...
T Consensus 254 -----------------------------~p~~l~--~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~--------- 293 (450)
T PRK00149 254 -----------------------------PPKELP--GLEERLRSRFEWGLTVDIEPPDLETRIAILKKKA--------- 293 (450)
T ss_pred -----------------------------CHHHHH--HHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHH---------
Confidence 011111 25678889995 578999999999999998521
Q ss_pred HHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHH
Q 038067 397 MFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAM 441 (510)
Q Consensus 397 ~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l 441 (510)
. ...+.++++++++|++.. ..++|.|..+|.++...+.
T Consensus 294 --~--~~~~~l~~e~l~~ia~~~---~~~~R~l~~~l~~l~~~~~ 331 (450)
T PRK00149 294 --E--EEGIDLPDEVLEFIAKNI---TSNVRELEGALNRLIAYAS 331 (450)
T ss_pred --H--HcCCCCCHHHHHHHHcCc---CCCHHHHHHHHHHHHHHHH
Confidence 1 125678999999999975 5668999999998765544
No 164
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=2.6e-11 Score=134.33 Aligned_cols=164 Identities=24% Similarity=0.316 Sum_probs=104.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhCCCe-------------------------EEEeccccccccccccchhhHHHHHHH
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVNVPF-------------------------TITDATALTQAGYVGEDAESVLYKLLA 218 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~~p~-------------------------~~~~~s~l~~~gy~G~~~~~~l~~l~~ 218 (510)
+.+||+||+|+|||++|+.+|+.++... +.++.+ ...+ -..++.+..
T Consensus 39 ~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~i~~~-----~~~~---vd~ir~ii~ 110 (585)
T PRK14950 39 HAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEMDAA-----SHTS---VDDAREIIE 110 (585)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEEEecc-----ccCC---HHHHHHHHH
Confidence 4589999999999999999999984211 111111 0111 112333333
Q ss_pred hhchhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceee
Q 038067 219 AADFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFI 298 (510)
Q Consensus 219 ~~~~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI 298 (510)
.....-..+...||+|||+|.|... .++.||+.||.. ..+++||
T Consensus 111 ~~~~~p~~~~~kVvIIDEa~~L~~~-------------a~naLLk~LEep-----------------------p~~tv~I 154 (585)
T PRK14950 111 RVQFRPALARYKVYIIDEVHMLSTA-------------AFNALLKTLEEP-----------------------PPHAIFI 154 (585)
T ss_pred HHhhCcccCCeEEEEEeChHhCCHH-------------HHHHHHHHHhcC-----------------------CCCeEEE
Confidence 2211112245679999999998754 589999999831 1234555
Q ss_pred cCCCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHH
Q 038067 299 CGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQ 378 (510)
Q Consensus 299 ~tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~ee 378 (510)
++++ +++ .+.+.+.+|+.. +.|.+++.++
T Consensus 155 l~t~--~~~------------------------------------------------kll~tI~SR~~~-i~f~~l~~~e 183 (585)
T PRK14950 155 LATT--EVH------------------------------------------------KVPATILSRCQR-FDFHRHSVAD 183 (585)
T ss_pred EEeC--Chh------------------------------------------------hhhHHHHhccce-eeCCCCCHHH
Confidence 5433 111 134566778764 6899999999
Q ss_pred HHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHH
Q 038067 379 LVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILT 438 (510)
Q Consensus 379 l~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~ 438 (510)
+..++... . ...+ +.++++++..|++.+ +++.|.+.+.++++..
T Consensus 184 l~~~L~~~----a-------~~eg--l~i~~eal~~La~~s---~Gdlr~al~~LekL~~ 227 (585)
T PRK14950 184 MAAHLRKI----A-------AAEG--INLEPGALEAIARAA---TGSMRDAENLLQQLAT 227 (585)
T ss_pred HHHHHHHH----H-------HHcC--CCCCHHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 88887641 1 1223 457999999999875 5568999999887643
No 165
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.31 E-value=1.8e-11 Score=119.60 Aligned_cols=162 Identities=18% Similarity=0.236 Sum_probs=109.4
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVD 238 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEid 238 (510)
...+++|+||+|||||++|+++++.+ +.+++.+++..+... + . ......+|+|||++
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~----------~----~------~~~~~~~liiDdi~ 100 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLA----------F----D------FDPEAELYAVDDVE 100 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH----------H----h------hcccCCEEEEeChh
Confidence 34689999999999999999999876 668888888765421 0 0 01235799999999
Q ss_pred hhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCC
Q 038067 239 KIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSS 318 (510)
Q Consensus 239 kl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~ 318 (510)
.+... .+..|+.+++... .....++|++++..
T Consensus 101 ~l~~~-------------~~~~L~~~~~~~~---------------------~~~~~~vl~~~~~~-------------- 132 (227)
T PRK08903 101 RLDDA-------------QQIALFNLFNRVR---------------------AHGQGALLVAGPAA-------------- 132 (227)
T ss_pred hcCch-------------HHHHHHHHHHHHH---------------------HcCCcEEEEeCCCC--------------
Confidence 87543 4778888886210 00112233343310
Q ss_pred CCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhccc--CceEecCCCCHHHHHHHHhchhHHHHHHHHH
Q 038067 319 IGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRF--PILVSLSALNEDQLVQVLMEPKNALGRQYKK 396 (510)
Q Consensus 319 ~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~--~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~ 396 (510)
| ....+.+++.+|+ ...+.++||++++...++.. +.
T Consensus 133 ------------------------------~---~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~----~~----- 170 (227)
T PRK08903 133 ------------------------------P---LALPLREDLRTRLGWGLVYELKPLSDADKIAALKA----AA----- 170 (227)
T ss_pred ------------------------------H---HhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHH----HH-----
Confidence 0 0012567888898 46889999999887777653 11
Q ss_pred HHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHH
Q 038067 397 MFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEA 440 (510)
Q Consensus 397 ~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~ 440 (510)
. ...+.++++++++|++. +..+.|.|+++++.+-..+
T Consensus 171 --~--~~~v~l~~~al~~L~~~---~~gn~~~l~~~l~~l~~~~ 207 (227)
T PRK08903 171 --A--ERGLQLADEVPDYLLTH---FRRDMPSLMALLDALDRYS 207 (227)
T ss_pred --H--HcCCCCCHHHHHHHHHh---ccCCHHHHHHHHHHHHHHH
Confidence 1 12367899999999984 3666899999999865433
No 166
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=2.1e-11 Score=131.49 Aligned_cols=163 Identities=28% Similarity=0.390 Sum_probs=119.6
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhc-CcEEEEcchhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQ-RGIVYIDEVDKI 240 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~-~~Vl~iDEidkl 240 (510)
+++++|++||||||||.+++++|+..+..++.+++.++.. .|.|++ +..++..|+.+ .+.+ +++|||||+|.+
T Consensus 217 ~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~-k~~gEt-e~~LR~~f~~a----~k~~~psii~IdEld~l 290 (693)
T KOG0730|consen 217 PPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELIS-KFPGET-ESNLRKAFAEA----LKFQVPSIIFIDELDAL 290 (693)
T ss_pred CCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHH-hcccch-HHHHHHHHHHH----hccCCCeeEeHHhHhhh
Confidence 7889999999999999999999999999999999999885 477876 77888888876 3445 899999999999
Q ss_pred hhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCC
Q 038067 241 VKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIG 320 (510)
Q Consensus 241 ~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~g 320 (510)
.+.+..... --.++...|+.+|+|- . ...+.+++.++|. .
T Consensus 291 ~p~r~~~~~---~e~Rv~sqlltL~dg~--------~-----~~~~vivl~atnr--------p---------------- 330 (693)
T KOG0730|consen 291 CPKREGADD---VESRVVSQLLTLLDGL--------K-----PDAKVIVLAATNR--------P---------------- 330 (693)
T ss_pred CCcccccch---HHHHHHHHHHHHHhhC--------c-----CcCcEEEEEecCC--------c----------------
Confidence 975432111 1235899999999851 1 1223334444433 1
Q ss_pred cCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhh-cccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHh
Q 038067 321 FGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFI-GRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFS 399 (510)
Q Consensus 321 f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl-~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~ 399 (510)
..+.|.+. +|||.-+.+.-++.....+|++...
T Consensus 331 ----------------------------------~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~------------ 364 (693)
T KOG0730|consen 331 ----------------------------------DSLDPALRRGRFDREVEIGIPGSDGRLDILRVLT------------ 364 (693)
T ss_pred ----------------------------------cccChhhhcCCCcceeeecCCCchhHHHHHHHHH------------
Confidence 13677777 5999999999999999999987421
Q ss_pred cCCceeeeCHHHHHHHHHh
Q 038067 400 MNNVKLHFTDDALRLIAKK 418 (510)
Q Consensus 400 ~~~~~l~is~~al~~La~~ 418 (510)
+++.+. ++..+..++..
T Consensus 365 -k~~~~~-~~~~l~~iA~~ 381 (693)
T KOG0730|consen 365 -KKMNLL-SDVDLEDIAVS 381 (693)
T ss_pred -HhcCCc-chhhHHHHHHH
Confidence 122222 56677777775
No 167
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.31 E-value=3.5e-11 Score=133.75 Aligned_cols=179 Identities=17% Similarity=0.258 Sum_probs=113.2
Q ss_pred eEEEEccCCChHHHHHHHHHHHh-------C---CCeEEEecccccccc--c-------------cccchhhHHHHHHHh
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIV-------N---VPFTITDATALTQAG--Y-------------VGEDAESVLYKLLAA 219 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l-------~---~p~~~~~~s~l~~~g--y-------------~G~~~~~~l~~l~~~ 219 (510)
.++++|+||||||++++.+.+.+ + ..++.++|..+..+. | .|......+..++..
T Consensus 783 vLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~ 862 (1164)
T PTZ00112 783 ILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQ 862 (1164)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhh
Confidence 35799999999999999998776 2 456899997654320 0 011111223333322
Q ss_pred hchhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeec
Q 038067 220 ADFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFIC 299 (510)
Q Consensus 220 ~~~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~ 299 (510)
... ......||+|||||.|... -++.|+.+++-. . ...+.+++|+
T Consensus 863 L~k--~~r~v~IIILDEID~L~kK-------------~QDVLYnLFR~~---------~-----------~s~SKLiLIG 907 (1164)
T PTZ00112 863 NKK--DNRNVSILIIDEIDYLITK-------------TQKVLFTLFDWP---------T-----------KINSKLVLIA 907 (1164)
T ss_pred hhc--ccccceEEEeehHhhhCcc-------------HHHHHHHHHHHh---------h-----------ccCCeEEEEE
Confidence 100 0112359999999999754 267778777510 0 0123455666
Q ss_pred CCCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCc-eEecCCCCHHH
Q 038067 300 GGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPI-LVSLSALNEDQ 378 (510)
Q Consensus 300 tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~-iv~f~~Ls~ee 378 (510)
.+|..++ ...+.|.+.+|+.. .+.|.|++.++
T Consensus 908 ISNdlDL-----------------------------------------------perLdPRLRSRLg~eeIvF~PYTaEQ 940 (1164)
T PTZ00112 908 ISNTMDL-----------------------------------------------PERLIPRCRSRLAFGRLVFSPYKGDE 940 (1164)
T ss_pred ecCchhc-----------------------------------------------chhhhhhhhhccccccccCCCCCHHH
Confidence 5551110 01245667778754 47899999999
Q ss_pred HHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHH
Q 038067 379 LVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILT 438 (510)
Q Consensus 379 l~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~ 438 (510)
+.+||...+.. . .-.++++|++++|+.+....++||..-.++++.+.
T Consensus 941 L~dILk~RAe~----------A---~gVLdDdAIELIArkVAq~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 941 IEKIIKERLEN----------C---KEIIDHTAIQLCARKVANVSGDIRKALQICRKAFE 987 (1164)
T ss_pred HHHHHHHHHHh----------C---CCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHh
Confidence 99999853211 1 23489999999999776667779988777777664
No 168
>PRK08727 hypothetical protein; Validated
Probab=99.31 E-value=1.6e-11 Score=120.82 Aligned_cols=168 Identities=23% Similarity=0.287 Sum_probs=108.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhh
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKI 240 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl 240 (510)
..++|+||+|||||+|+.+++..+ +...+++++.++.. .+...+... ....+|+|||++.+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~----------~~~~~~~~l------~~~dlLiIDDi~~l 105 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG----------RLRDALEAL------EGRSLVALDGLESI 105 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh----------hHHHHHHHH------hcCCEEEEeCcccc
Confidence 359999999999999999998776 45556666544331 111222111 23469999999987
Q ss_pred hhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCC
Q 038067 241 VKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIG 320 (510)
Q Consensus 241 ~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~g 320 (510)
.... .-+..|+.+++... ..+..+|+|++..
T Consensus 106 ~~~~-----------~~~~~lf~l~n~~~----------------------~~~~~vI~ts~~~---------------- 136 (233)
T PRK08727 106 AGQR-----------EDEVALFDFHNRAR----------------------AAGITLLYTARQM---------------- 136 (233)
T ss_pred cCCh-----------HHHHHHHHHHHHHH----------------------HcCCeEEEECCCC----------------
Confidence 6432 13566777765210 0112233444310
Q ss_pred cCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhccc--CceEecCCCCHHHHHHHHhchhHHHHHHHHHHH
Q 038067 321 FGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRF--PILVSLSALNEDQLVQVLMEPKNALGRQYKKMF 398 (510)
Q Consensus 321 f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~--~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~ 398 (510)
|.++ ..+.|.+.+|+ ..++.|++++.+++.+|+....
T Consensus 137 ----------------------------p~~l--~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a----------- 175 (233)
T PRK08727 137 ----------------------------PDGL--ALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERA----------- 175 (233)
T ss_pred ----------------------------hhhh--hhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHH-----------
Confidence 1111 12568899997 5678999999999999997411
Q ss_pred hcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHHh
Q 038067 399 SMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMF 442 (510)
Q Consensus 399 ~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~ 442 (510)
.. ..+.++++++++|++.+ ....|.+.++++.+...++.
T Consensus 176 ~~--~~l~l~~e~~~~La~~~---~rd~r~~l~~L~~l~~~~~~ 214 (233)
T PRK08727 176 QR--RGLALDEAAIDWLLTHG---ERELAGLVALLDRLDRESLA 214 (233)
T ss_pred HH--cCCCCCHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHH
Confidence 11 24779999999999985 45688888889987654444
No 169
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.30 E-value=3.1e-11 Score=139.08 Aligned_cols=169 Identities=25% Similarity=0.299 Sum_probs=111.1
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh----------CCCeEEEeccccc-cccccccchhhHHHHHHHhhchhHHHhcCc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV----------NVPFTITDATALT-QAGYVGEDAESVLYKLLAAADFDVEAAQRG 230 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l----------~~p~~~~~~s~l~-~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~ 230 (510)
.+.|++|+||||||||++++.+|+.+ +.+++.++++.+. ...|.|.- +..+..++.... ....+.
T Consensus 193 ~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~-e~~l~~~l~~~~---~~~~~~ 268 (852)
T TIGR03346 193 TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEF-EERLKAVLNEVT---KSEGQI 268 (852)
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhH-HHHHHHHHHHHH---hcCCCe
Confidence 55789999999999999999999876 5678888887764 23466653 455666655431 112468
Q ss_pred EEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHH
Q 038067 231 IVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTI 310 (510)
Q Consensus 231 Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i 310 (510)
|||||||+.+..+....+. ..+.+.|..+++. ..+.+|.+++..+..+.+
T Consensus 269 ILfIDEih~l~~~g~~~~~-----~d~~~~Lk~~l~~-------------------------g~i~~IgaTt~~e~r~~~ 318 (852)
T TIGR03346 269 ILFIDELHTLVGAGKAEGA-----MDAGNMLKPALAR-------------------------GELHCIGATTLDEYRKYI 318 (852)
T ss_pred EEEeccHHHhhcCCCCcch-----hHHHHHhchhhhc-------------------------CceEEEEeCcHHHHHHHh
Confidence 9999999999864332221 2366777666642 234556666532221111
Q ss_pred HhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHH
Q 038067 311 SERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNAL 390 (510)
Q Consensus 311 ~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l 390 (510)
...|+|.+||.. |.+..++.++..+|++. +
T Consensus 319 ---------------------------------------------~~d~al~rRf~~-i~v~~p~~~~~~~iL~~----~ 348 (852)
T TIGR03346 319 ---------------------------------------------EKDAALERRFQP-VFVDEPTVEDTISILRG----L 348 (852)
T ss_pred ---------------------------------------------hcCHHHHhcCCE-EEeCCCCHHHHHHHHHH----H
Confidence 157899999976 57888899999999874 3
Q ss_pred HHHHHHHHhcCCceeeeCHHHHHHHHHhh
Q 038067 391 GRQYKKMFSMNNVKLHFTDDALRLIAKKA 419 (510)
Q Consensus 391 ~~~~~~~~~~~~~~l~is~~al~~La~~~ 419 (510)
...|. ....+.++++++..++..+
T Consensus 349 ~~~~e-----~~~~v~~~d~~i~~~~~ls 372 (852)
T TIGR03346 349 KERYE-----VHHGVRITDPAIVAAATLS 372 (852)
T ss_pred HHHhc-----cccCCCCCHHHHHHHHHhc
Confidence 33332 1344556788887777654
No 170
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=99.30 E-value=1.5e-11 Score=121.77 Aligned_cols=234 Identities=21% Similarity=0.226 Sum_probs=136.9
Q ss_pred ChHHHHhhhccccccchhhhhccchhhhhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhhcccccccccccCCccCCCCCC
Q 038067 74 TPKEICKGLDEFVIGQERAKKSHIFCILVDMLVYVIGACCAVYNHYKRIYHSSLQKELVSDHLYVDSILGSGVKSGNCNV 153 (510)
Q Consensus 74 ~~~el~~~L~~~ViGQ~~ak~~~~~~~~~~~~~~~~~l~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 153 (510)
+...|+..|++.+.||.-|+.. +..++..|+..-..
T Consensus 72 ~~~~Le~dL~~~lfGQHla~~~---------------Vv~alk~~~~n~~p----------------------------- 107 (344)
T KOG2170|consen 72 DLDGLEKDLARALFGQHLAKQL---------------VVNALKSHWANPNP----------------------------- 107 (344)
T ss_pred cchHHHHHHHHHhhchHHHHHH---------------HHHHHHHHhcCCCC-----------------------------
Confidence 4667999999999999999999 77777766543211
Q ss_pred CcchhhhccCceEEEEccCCChHHHHHHHHHHHh-----CCCeEEEecc--ccccccccccchhhHHHHHHHhhchhHHH
Q 038067 154 ENDEIVELEKSNVLLMGPTGSGKTLLAKTLARIV-----NVPFTITDAT--ALTQAGYVGEDAESVLYKLLAAADFDVEA 226 (510)
Q Consensus 154 ~~~~~~~~~~~~vLL~GPpGtGKT~lAr~lA~~l-----~~p~~~~~~s--~l~~~gy~G~~~~~~l~~l~~~~~~~~~~ 226 (510)
..|-.+-|+|+|||||.++++.||+.+ ..|++..=-+ ++-.+.+ ++..-.++-......+..
T Consensus 108 -------~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~----ie~Yk~eL~~~v~~~v~~ 176 (344)
T KOG2170|consen 108 -------RKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASK----IEDYKEELKNRVRGTVQA 176 (344)
T ss_pred -------CCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHH----HHHHHHHHHHHHHHHHHh
Confidence 145678899999999999999999988 1233321111 1111111 111112233333345667
Q ss_pred hcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccc-
Q 038067 227 AQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVG- 305 (510)
Q Consensus 227 ~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~- 305 (510)
.+.+++++||+|||++. +.+.|-..||-... ..-++..+.|||+-+|-.+
T Consensus 177 C~rslFIFDE~DKmp~g-------------Lld~lkpfLdyyp~----------------v~gv~frkaIFIfLSN~gg~ 227 (344)
T KOG2170|consen 177 CQRSLFIFDEVDKLPPG-------------LLDVLKPFLDYYPQ----------------VSGVDFRKAIFIFLSNAGGS 227 (344)
T ss_pred cCCceEEechhhhcCHh-------------HHHHHhhhhccccc----------------cccccccceEEEEEcCCcch
Confidence 88999999999999765 78888888872110 1125677888888777544
Q ss_pred -hHHHH----HhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHH
Q 038067 306 -LEKTI----SERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLV 380 (510)
Q Consensus 306 -l~~~i----~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~ 380 (510)
+.++. +....+..+++..-.+..+ ....+.. +.-+....++| .++||.+|+|.||+..++.
T Consensus 228 eI~~~aL~~~~~g~~re~~~l~~~E~~L~-----------~~~~n~~-~~Gl~~S~li~--~~lid~fIPFLPLek~hV~ 293 (344)
T KOG2170|consen 228 EIARIALENARNGKPREQLRLKSFEPALM-----------QSAFNEK-AGGLVHSRLIS--NNLIDHFIPFLPLEKRHVR 293 (344)
T ss_pred HHHHHHHHHHHcCCCcccchhhhhhHHHH-----------Hhhhccc-cccccccccch--hhHHhhccCcCcccHHHHH
Confidence 12222 1112233333322111110 0111000 00011111222 3578999999999999988
Q ss_pred HHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHh
Q 038067 381 QVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKK 418 (510)
Q Consensus 381 ~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~ 418 (510)
..++.. + ...| +..+.+.++.+++.
T Consensus 294 ~C~r~e---l--------~~rg--~~~d~~~~erva~~ 318 (344)
T KOG2170|consen 294 SCIRAE---L--------RKRG--LAPDQDFVERVANS 318 (344)
T ss_pred HHHHHH---H--------Hhcc--cccchHHHHHHHHh
Confidence 888642 1 1123 55677777777664
No 171
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.29 E-value=3.6e-11 Score=133.37 Aligned_cols=164 Identities=24% Similarity=0.363 Sum_probs=108.9
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhCC-------------------------CeEEEeccccccccccccchhhHHHHHH
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVNV-------------------------PFTITDATALTQAGYVGEDAESVLYKLL 217 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~~-------------------------p~~~~~~s~l~~~gy~G~~~~~~l~~l~ 217 (510)
++.+||+||+|+|||++|+.+|+.++. .+..+++..- . . ...++.+.
T Consensus 39 ~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~ld~~~~-----~--~-vd~Ir~li 110 (614)
T PRK14971 39 AHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIHELDAASN-----N--S-VDDIRNLI 110 (614)
T ss_pred CeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceEEeccccc-----C--C-HHHHHHHH
Confidence 345999999999999999999998842 1122222110 0 0 12344444
Q ss_pred HhhchhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCcee
Q 038067 218 AAADFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILF 297 (510)
Q Consensus 218 ~~~~~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilf 297 (510)
......-..+...|++|||++.|... .++.|++.||. ...+++|
T Consensus 111 ~~~~~~P~~~~~KVvIIdea~~Ls~~-------------a~naLLK~LEe-----------------------pp~~tif 154 (614)
T PRK14971 111 EQVRIPPQIGKYKIYIIDEVHMLSQA-------------AFNAFLKTLEE-----------------------PPSYAIF 154 (614)
T ss_pred HHHhhCcccCCcEEEEEECcccCCHH-------------HHHHHHHHHhC-----------------------CCCCeEE
Confidence 33211112245679999999999754 69999999983 1123456
Q ss_pred ecCCCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHH
Q 038067 298 ICGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNED 377 (510)
Q Consensus 298 I~tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~e 377 (510)
|++++. ...+.|.+++|+.. +.|.+++.+
T Consensus 155 IL~tt~--------------------------------------------------~~kIl~tI~SRc~i-v~f~~ls~~ 183 (614)
T PRK14971 155 ILATTE--------------------------------------------------KHKILPTILSRCQI-FDFNRIQVA 183 (614)
T ss_pred EEEeCC--------------------------------------------------chhchHHHHhhhhe-eecCCCCHH
Confidence 655430 01366788999865 699999999
Q ss_pred HHHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHH
Q 038067 378 QLVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENIL 437 (510)
Q Consensus 378 el~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l 437 (510)
++...+.. +. ...+ +.+++++++.|+..+ +++.|.+.+.+++++
T Consensus 184 ei~~~L~~----ia-------~~eg--i~i~~~al~~La~~s---~gdlr~al~~Lekl~ 227 (614)
T PRK14971 184 DIVNHLQY----VA-------SKEG--ITAEPEALNVIAQKA---DGGMRDALSIFDQVV 227 (614)
T ss_pred HHHHHHHH----HH-------HHcC--CCCCHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 99887764 11 2233 568999999999986 567888888887754
No 172
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.29 E-value=6.6e-13 Score=117.25 Aligned_cols=92 Identities=29% Similarity=0.317 Sum_probs=55.0
Q ss_pred eEEEEccCCChHHHHHHHHHHHhCCCeEEEecc-ccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhhhh
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIVNVPFTITDAT-ALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIVKA 243 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s-~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~~~ 243 (510)
|+||+|+||+|||++|+++|+.++..|.++.++ ++..+...|...-..-...++-..+. --..|+++|||.+.++.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GP---if~~ill~DEiNrappk 77 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGP---IFTNILLADEINRAPPK 77 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-T---T-SSEEEEETGGGS-HH
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecCh---hhhceeeecccccCCHH
Confidence 699999999999999999999999999999886 44433222221100000000000000 12369999999998876
Q ss_pred ccCCCCCCCchhhHHHHHHHHhhCceeee
Q 038067 244 ESRNNGRDVSGEGVQQALLKMLEGTVVNV 272 (510)
Q Consensus 244 ~~~~~~~~~~~~~v~~~LL~~leg~~~~i 272 (510)
+|++||++|+++.+++
T Consensus 78 -------------tQsAlLeam~Er~Vt~ 93 (131)
T PF07726_consen 78 -------------TQSALLEAMEERQVTI 93 (131)
T ss_dssp -------------HHHHHHHHHHHSEEEE
T ss_pred -------------HHHHHHHHHHcCeEEe
Confidence 8999999999888875
No 173
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.29 E-value=4.7e-11 Score=120.63 Aligned_cols=61 Identities=16% Similarity=0.356 Sum_probs=46.8
Q ss_pred cCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHH
Q 038067 355 YGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLE 434 (510)
Q Consensus 355 ~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie 434 (510)
.|++..|++|+-+ |.-.|++.+++..|++. .+....+.++++|+++|+..+ -..+||-+++
T Consensus 343 hGIP~DlLDRllI-I~t~py~~~EireIi~i-------------Ra~ee~i~l~~~Ale~L~~ig-----~etSLRYa~q 403 (450)
T COG1224 343 HGIPLDLLDRLLI-ISTRPYSREEIREIIRI-------------RAKEEDIELSDDALEYLTDIG-----EETSLRYAVQ 403 (450)
T ss_pred CCCCHhhhhheeE-EecCCCCHHHHHHHHHH-------------hhhhhccccCHHHHHHHHhhc-----hhhhHHHHHH
Confidence 4677899999954 59999999999999975 234556788999999999863 2345665555
No 174
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.29 E-value=3.7e-11 Score=132.97 Aligned_cols=191 Identities=20% Similarity=0.251 Sum_probs=118.6
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhC--CCeEEEeccccccccccccc-hhhHHH-HHHHhhchhHHHhcCcEEEEcchh
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVN--VPFTITDATALTQAGYVGED-AESVLY-KLLAAADFDVEAAQRGIVYIDEVD 238 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~--~p~~~~~~s~l~~~gy~G~~-~~~~l~-~l~~~~~~~~~~~~~~Vl~iDEid 238 (510)
-+++||.|+||||||++|+++++.+. .||+.+..+ .+....+|.- ....+. ..+...++.+.++++||||||||+
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~-~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~ 94 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLG-VTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMAN 94 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcc-cchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchh
Confidence 46899999999999999999999985 479888863 2222233321 010000 001112334556788999999999
Q ss_pred hhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCC
Q 038067 239 KIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSS 318 (510)
Q Consensus 239 kl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~ 318 (510)
++.+. +|+.|+++|+.+.+++. ..|... -...++.+|+|.|..+
T Consensus 95 rl~~~-------------~q~~Ll~al~~g~v~i~--r~G~~~--------~~p~~f~lIAt~np~e------------- 138 (589)
T TIGR02031 95 LLDDG-------------LSNRLLQALDEGVVIVE--REGISV--------VHPAKFALIATYDPAE------------- 138 (589)
T ss_pred hCCHH-------------HHHHHHHHHHcCCeEEE--ECCCce--------eecCceEEEEecCCcc-------------
Confidence 99876 89999999997776654 334322 1234556666655110
Q ss_pred CCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCC-HHHHHHHHhchhHHH-------
Q 038067 319 IGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALN-EDQLVQVLMEPKNAL------- 390 (510)
Q Consensus 319 ~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls-~eel~~Il~~~~~~l------- 390 (510)
....|.+.|+.||+..|.+..+. .++..+|++......
T Consensus 139 ----------------------------------~~g~L~~~LldRf~l~v~~~~~~~~~er~eil~~~~~~~~~~~~~~ 184 (589)
T TIGR02031 139 ----------------------------------GGGGLPDHLLDRLALHVSLEDVASQDLRVEIVRRERCNEVFRMNDE 184 (589)
T ss_pred ----------------------------------ccCCCCHHHHHhccCeeecCCCCCHHHHHHHHHHHHHhhhhhcchh
Confidence 01238889999999977776654 455677776533111
Q ss_pred ---HHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCC
Q 038067 391 ---GRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNT 424 (510)
Q Consensus 391 ---~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~ 424 (510)
...........-..+.++++++++|++.+...+.
T Consensus 185 ~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv 221 (589)
T TIGR02031 185 LELLRGQIEAARELLPQVTISAEQVKELVLTAASLGI 221 (589)
T ss_pred hHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCC
Confidence 1111111122234567899999999988765443
No 175
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.28 E-value=1.6e-11 Score=119.78 Aligned_cols=152 Identities=20% Similarity=0.303 Sum_probs=96.1
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVD 238 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEid 238 (510)
+..|+||+|+.|||||+++|++...+ |..++.++..++..- ... -..++..+ ..=|||+|++.
T Consensus 51 pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~l-------~~l-~~~l~~~~------~kFIlf~DDLs 116 (249)
T PF05673_consen 51 PANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGDL-------PEL-LDLLRDRP------YKFILFCDDLS 116 (249)
T ss_pred CCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhccH-------HHH-HHHHhcCC------CCEEEEecCCC
Confidence 66899999999999999999999888 667888888777531 222 22333222 34699999855
Q ss_pred hhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCC
Q 038067 239 KIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSS 318 (510)
Q Consensus 239 kl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~ 318 (510)
= ... +.-...|..+|||+.-..| .|++|.+|+|-..| +.+...+..
T Consensus 117 F-e~~-----------d~~yk~LKs~LeGgle~~P-------------------~NvliyATSNRRHL---v~E~~~d~~ 162 (249)
T PF05673_consen 117 F-EEG-----------DTEYKALKSVLEGGLEARP-------------------DNVLIYATSNRRHL---VPESFSDRE 162 (249)
T ss_pred C-CCC-----------cHHHHHHHHHhcCccccCC-------------------CcEEEEEecchhhc---cchhhhhcc
Confidence 2 111 1247889999997654433 56666777663221 111100000
Q ss_pred CCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhc
Q 038067 319 IGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLME 385 (510)
Q Consensus 319 ~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~ 385 (510)
- ..-+.+.+.|-+...+ .|-.||..+|.|.+++.+++.+|++.
T Consensus 163 ~----------------------~~~~eih~~d~~eEkl--SLsDRFGL~l~F~~~~q~~YL~IV~~ 205 (249)
T PF05673_consen 163 D----------------------IQDDEIHPSDTIEEKL--SLSDRFGLWLSFYPPDQEEYLAIVRH 205 (249)
T ss_pred C----------------------CCccccCcchHHHHHH--hHHHhCCcEEEecCCCHHHHHHHHHH
Confidence 0 0011223333333322 57789999999999999999999985
No 176
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.28 E-value=4.9e-11 Score=121.74 Aligned_cols=165 Identities=24% Similarity=0.307 Sum_probs=103.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhC-----CCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchh
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVN-----VPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVD 238 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~-----~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEid 238 (510)
.+++|+||||||||++++++++.+. ..++.+++++...... ....+..+....+. ..+...+|+|||++
T Consensus 39 ~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~----~~~~i~~~~~~~~~--~~~~~~vviiDe~~ 112 (319)
T PRK00440 39 PHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGIDV----IRNKIKEFARTAPV--GGAPFKIIFLDEAD 112 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccchHH----HHHHHHHHHhcCCC--CCCCceEEEEeCcc
Confidence 4699999999999999999999872 2344444433211000 01111222111111 11245699999999
Q ss_pred hhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCC
Q 038067 239 KIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSS 318 (510)
Q Consensus 239 kl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~ 318 (510)
.+... .++.|+++++. . ..++.||++++..
T Consensus 113 ~l~~~-------------~~~~L~~~le~---------~--------------~~~~~lIl~~~~~-------------- 142 (319)
T PRK00440 113 NLTSD-------------AQQALRRTMEM---------Y--------------SQNTRFILSCNYS-------------- 142 (319)
T ss_pred cCCHH-------------HHHHHHHHHhc---------C--------------CCCCeEEEEeCCc--------------
Confidence 98654 57889999862 0 1123444444410
Q ss_pred CCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHH
Q 038067 319 IGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMF 398 (510)
Q Consensus 319 ~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~ 398 (510)
..+.+++.+|+.. +.|.+++.+++..++...+
T Consensus 143 ------------------------------------~~l~~~l~sr~~~-~~~~~l~~~ei~~~l~~~~----------- 174 (319)
T PRK00440 143 ------------------------------------SKIIDPIQSRCAV-FRFSPLKKEAVAERLRYIA----------- 174 (319)
T ss_pred ------------------------------------cccchhHHHHhhe-eeeCCCCHHHHHHHHHHHH-----------
Confidence 1144567778764 6999999999988886421
Q ss_pred hcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHH
Q 038067 399 SMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENIL 437 (510)
Q Consensus 399 ~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l 437 (510)
...+ +.++++++++|++.+ .+..|.+.+.++...
T Consensus 175 ~~~~--~~i~~~al~~l~~~~---~gd~r~~~~~l~~~~ 208 (319)
T PRK00440 175 ENEG--IEITDDALEAIYYVS---EGDMRKAINALQAAA 208 (319)
T ss_pred HHcC--CCCCHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 1223 458999999999975 556888888887654
No 177
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.27 E-value=2.3e-11 Score=132.94 Aligned_cols=175 Identities=14% Similarity=0.225 Sum_probs=112.6
Q ss_pred eEEEEccCCChHHHHHHHHHHHh-----CCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhh
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIV-----NVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDK 239 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l-----~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidk 239 (510)
.++|+|++|+|||+|+.++++.+ +..++++++.++... |...-..+.+. .|.+ .-....+|+||||+.
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~e-l~~al~~~~~~-~f~~-----~y~~~DLLlIDDIq~ 388 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNE-FINSIRDGKGD-SFRR-----RYREMDILLVDDIQF 388 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHH-HHHHHHhccHH-HHHH-----HhhcCCEEEEehhcc
Confidence 49999999999999999999977 457788888776532 21110011111 1111 112347999999999
Q ss_pred hhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCC
Q 038067 240 IVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSI 319 (510)
Q Consensus 240 l~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~ 319 (510)
+.... ..+..|+.+++... + .+..+|+|++.
T Consensus 389 l~gke-----------~tqeeLF~l~N~l~------e----------------~gk~IIITSd~---------------- 419 (617)
T PRK14086 389 LEDKE-----------STQEEFFHTFNTLH------N----------------ANKQIVLSSDR---------------- 419 (617)
T ss_pred ccCCH-----------HHHHHHHHHHHHHH------h----------------cCCCEEEecCC----------------
Confidence 86432 24666777775210 0 11112223331
Q ss_pred CcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhccc--CceEecCCCCHHHHHHHHhchhHHHHHHHHHH
Q 038067 320 GFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRF--PILVSLSALNEDQLVQVLMEPKNALGRQYKKM 397 (510)
Q Consensus 320 gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~--~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~ 397 (510)
.|.++ ..+.+.|.+|| ..++.+.+++.+.+.+|+.+..
T Consensus 420 ----------------------------~P~eL--~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka---------- 459 (617)
T PRK14086 420 ----------------------------PPKQL--VTLEDRLRNRFEWGLITDVQPPELETRIAILRKKA---------- 459 (617)
T ss_pred ----------------------------ChHhh--hhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHH----------
Confidence 01122 13567889999 5578999999999999997521
Q ss_pred HhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHH
Q 038067 398 FSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAM 441 (510)
Q Consensus 398 ~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l 441 (510)
....+.++++++++|++.. ..+.|.|..+|.++...+.
T Consensus 460 ---~~r~l~l~~eVi~yLa~r~---~rnvR~LegaL~rL~a~a~ 497 (617)
T PRK14086 460 ---VQEQLNAPPEVLEFIASRI---SRNIRELEGALIRVTAFAS 497 (617)
T ss_pred ---HhcCCCCCHHHHHHHHHhc---cCCHHHHHHHHHHHHHHHH
Confidence 1235778999999999974 4568999999998765444
No 178
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.26 E-value=2.8e-11 Score=129.58 Aligned_cols=173 Identities=16% Similarity=0.279 Sum_probs=112.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhh
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKI 240 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl 240 (510)
.+++|+||+|+|||+|++++++.+ +.+++++++..+... +...-..+... .+.. .-....+|+||||+.+
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~-~~~~l~~~~~~-~f~~-----~~~~~dvLiIDDiq~l 214 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEH-LVSAIRSGEMQ-RFRQ-----FYRNVDALFIEDIEVF 214 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHH-HHHHHhcchHH-HHHH-----HcccCCEEEEcchhhh
Confidence 469999999999999999999877 577888887665421 10000000000 1111 0124569999999998
Q ss_pred hhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCC
Q 038067 241 VKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIG 320 (510)
Q Consensus 241 ~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~g 320 (510)
.... ..++.|+.+++... . .+..+|+|++.
T Consensus 215 ~~k~-----------~~qeelf~l~N~l~------~----------------~~k~IIlts~~----------------- 244 (445)
T PRK12422 215 SGKG-----------ATQEEFFHTFNSLH------T----------------EGKLIVISSTC----------------- 244 (445)
T ss_pred cCCh-----------hhHHHHHHHHHHHH------H----------------CCCcEEEecCC-----------------
Confidence 6432 14667777664110 0 11123334431
Q ss_pred cCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccC--ceEecCCCCHHHHHHHHhchhHHHHHHHHHHH
Q 038067 321 FGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFP--ILVSLSALNEDQLVQVLMEPKNALGRQYKKMF 398 (510)
Q Consensus 321 f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~--~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~ 398 (510)
.|.++ ..+.+.+.+||. .++.+.+++.+++..|++...
T Consensus 245 ---------------------------~p~~l--~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~----------- 284 (445)
T PRK12422 245 ---------------------------APQDL--KAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKA----------- 284 (445)
T ss_pred ---------------------------CHHHH--hhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHH-----------
Confidence 01122 136678899995 789999999999999997522
Q ss_pred hcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHH
Q 038067 399 SMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILT 438 (510)
Q Consensus 399 ~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~ 438 (510)
. ...+.++++++++|+... ..+.|.|...+++++.
T Consensus 285 ~--~~~~~l~~evl~~la~~~---~~dir~L~g~l~~l~~ 319 (445)
T PRK12422 285 E--ALSIRIEETALDFLIEAL---SSNVKSLLHALTLLAK 319 (445)
T ss_pred H--HcCCCCCHHHHHHHHHhc---CCCHHHHHHHHHHHHH
Confidence 1 123678999999999974 5679999999999864
No 179
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.25 E-value=3e-11 Score=123.64 Aligned_cols=39 Identities=33% Similarity=0.625 Sum_probs=32.3
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhC--CCeEEEeccccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVN--VPFTITDATALT 200 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~--~p~~~~~~s~l~ 200 (510)
.++.+||.||||||||.||-++|+.|| .||+.++++++-
T Consensus 49 aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiy 89 (398)
T PF06068_consen 49 AGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIY 89 (398)
T ss_dssp TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-
T ss_pred cCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceee
Confidence 557899999999999999999999996 799999998754
No 180
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.24 E-value=6.3e-11 Score=131.40 Aligned_cols=138 Identities=22% Similarity=0.337 Sum_probs=82.4
Q ss_pred HhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcE--EEEcCCceeecCCCc
Q 038067 226 AAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNI--PIDTKDILFICGGAF 303 (510)
Q Consensus 226 ~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i--~i~tsnilfI~tg~~ 303 (510)
++++|+|||||++.|... .|..|+++|+.+.+.+. ....+. .+..+ .-...++.+|++++.
T Consensus 215 ~AngGtL~Ldei~~L~~~-------------~q~~Ll~~L~~~~i~~~--g~~e~~--~~~~~~~~~ip~dvrvIa~~~~ 277 (608)
T TIGR00764 215 RAHKGVLYIDEIKTMPLE-------------VQQYLLTALQDKKFPIT--GQSENS--SGAMVRTEPVPCDFILVASGNL 277 (608)
T ss_pred ECCCCEEEEEChHhCCHH-------------HHHHHHHHHHhCcEEec--Cccccc--cccccCCCCCccceEEEEECCH
Confidence 567899999999999854 79999999987766643 111000 00000 001235667777762
Q ss_pred cchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccC---ceEecCC---CCHH
Q 038067 304 VGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFP---ILVSLSA---LNED 377 (510)
Q Consensus 304 ~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~---~iv~f~~---Ls~e 377 (510)
. ++ ..+.|+|+.||+ ..+.|.. .+.+
T Consensus 278 ~----------------------------------------------~l--~~l~~~l~~rf~~y~v~v~~~~~~~~~~e 309 (608)
T TIGR00764 278 D----------------------------------------------DL--EGMHPALRSRIRGYGYEVYMKDTMPDTPE 309 (608)
T ss_pred H----------------------------------------------HH--hhcCHHHHHHhcCCeEEEEeeccCCCCHH
Confidence 1 00 237899999999 6666654 3556
Q ss_pred HHHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCC-------CCCChhHHHHHHHHH
Q 038067 378 QLVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMA-------KNTGARGLRALLENI 436 (510)
Q Consensus 378 el~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~-------~~~gaR~L~~~ie~~ 436 (510)
...+++. .+.+++ ...+...+++++++..|.+.+.. .....|.|.++++..
T Consensus 310 ~~~~~~~----~i~~~~----~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~A 367 (608)
T TIGR00764 310 NRDKLVQ----FVAQEV----KKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRAA 367 (608)
T ss_pred HHHHHHH----HHHHHH----HHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHH
Confidence 6655543 122222 22344458999999999875321 112356666666654
No 181
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=9.5e-11 Score=122.14 Aligned_cols=141 Identities=18% Similarity=0.251 Sum_probs=101.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhhhh
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIVKA 243 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~~~ 243 (510)
++.|||||||||||++.-|+|+.|+..+..++.++.... .-+++++...+ +.+||+|.+||.-...
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n--------~dLr~LL~~t~------~kSIivIEDIDcs~~l 301 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLD--------SDLRHLLLATP------NKSILLIEDIDCSFDL 301 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCc--------HHHHHHHHhCC------CCcEEEEeeccccccc
Confidence 579999999999999999999999999999988876532 22777776653 6689999999986532
Q ss_pred ccCCCC-----CCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCC
Q 038067 244 ESRNNG-----RDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSS 318 (510)
Q Consensus 244 ~~~~~~-----~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~ 318 (510)
+..... .+....-.+..||..+||-.-. ...-.|+|||+|+.+
T Consensus 302 ~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSs-------------------cg~ERIivFTTNh~E------------- 349 (457)
T KOG0743|consen 302 RERRKKKKENFEGDLSRVTLSGLLNFLDGLWSS-------------------CGDERIIVFTTNHKE------------- 349 (457)
T ss_pred ccccccccccccCCcceeehHHhhhhhcccccc-------------------CCCceEEEEecCChh-------------
Confidence 211111 1111223678899999863211 011346777777431
Q ss_pred CCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhc--ccCceEecCCCCHHHHHHHHhchh
Q 038067 319 IGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIG--RFPILVSLSALNEDQLVQVLMEPK 387 (510)
Q Consensus 319 ~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~--R~~~iv~f~~Ls~eel~~Il~~~~ 387 (510)
.+.|+|+. |+|..|.+..-+.+.+..++...+
T Consensus 350 -------------------------------------kLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL 383 (457)
T KOG0743|consen 350 -------------------------------------KLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYL 383 (457)
T ss_pred -------------------------------------hcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhc
Confidence 37777777 999999999999999988887654
No 182
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.20 E-value=1.1e-10 Score=124.95 Aligned_cols=177 Identities=16% Similarity=0.261 Sum_probs=109.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHHh-----CCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchh
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIV-----NVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVD 238 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l-----~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEid 238 (510)
.+++|+||||+|||+|++++++.+ +..++++++.++... +...-..+.+..+... -.....+|+|||++
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~-~~~~~~~~~~~~f~~~-----~~~~~dvLlIDDi~ 204 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLND-LVDSMKEGKLNEFREK-----YRKKVDVLLIDDVQ 204 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHH-HHHHHhcccHHHHHHH-----HHhcCCEEEEechh
Confidence 469999999999999999999886 346777887765421 1100000011111110 01245799999999
Q ss_pred hhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCC
Q 038067 239 KIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSS 318 (510)
Q Consensus 239 kl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~ 318 (510)
.+.... ..+..|+.+++... +. +..+|+|++..
T Consensus 205 ~l~~~~-----------~~q~elf~~~n~l~------~~----------------~k~iIitsd~~-------------- 237 (440)
T PRK14088 205 FLIGKT-----------GVQTELFHTFNELH------DS----------------GKQIVICSDRE-------------- 237 (440)
T ss_pred hhcCcH-----------HHHHHHHHHHHHHH------Hc----------------CCeEEEECCCC--------------
Confidence 875331 14566666664110 01 11122233200
Q ss_pred CCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccC--ceEecCCCCHHHHHHHHhchhHHHHHHHHH
Q 038067 319 IGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFP--ILVSLSALNEDQLVQVLMEPKNALGRQYKK 396 (510)
Q Consensus 319 ~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~--~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~ 396 (510)
|.++ ..+.+.+.+||. .++.+.+++.+++..|+++..
T Consensus 238 ------------------------------p~~l--~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~--------- 276 (440)
T PRK14088 238 ------------------------------PQKL--SEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKML--------- 276 (440)
T ss_pred ------------------------------HHHH--HHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHH---------
Confidence 1111 114567788884 478999999999999997521
Q ss_pred HHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHH
Q 038067 397 MFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAM 441 (510)
Q Consensus 397 ~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l 441 (510)
. ...+.++++++++|++.. ..++|.|..++.++...+.
T Consensus 277 --~--~~~~~l~~ev~~~Ia~~~---~~~~R~L~g~l~~l~~~~~ 314 (440)
T PRK14088 277 --E--IEHGELPEEVLNFVAENV---DDNLRRLRGAIIKLLVYKE 314 (440)
T ss_pred --H--hcCCCCCHHHHHHHHhcc---ccCHHHHHHHHHHHHHHHH
Confidence 1 124668999999999975 5679999999998765444
No 183
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.19 E-value=1.2e-10 Score=125.13 Aligned_cols=179 Identities=15% Similarity=0.263 Sum_probs=115.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHHh-----CCCeEEEeccccccccccccchh--hHHHHHHHhhchhHHHhcCcEEEEcc
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIV-----NVPFTITDATALTQAGYVGEDAE--SVLYKLLAAADFDVEAAQRGIVYIDE 236 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l-----~~p~~~~~~s~l~~~gy~G~~~~--~~l~~l~~~~~~~~~~~~~~Vl~iDE 236 (510)
.+++|+|++|+|||+|++++++.+ +..++++++.++... +...-.. ..+..+.+ .-....+|+|||
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~-~~~~l~~~~~~~~~~~~------~~~~~dvLiIDD 214 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARK-AVDILQKTHKEIEQFKN------EICQNDVLIIDD 214 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHH-HHHHHHHhhhHHHHHHH------HhccCCEEEEec
Confidence 469999999999999999999866 356777777766521 1110000 01111111 112446999999
Q ss_pred hhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhccc
Q 038067 237 VDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQD 316 (510)
Q Consensus 237 idkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~ 316 (510)
++.+.... ..++.|+.+++... +.+ -.+|+|++..
T Consensus 215 iq~l~~k~-----------~~~e~lf~l~N~~~------~~~----------------k~iIltsd~~------------ 249 (450)
T PRK14087 215 VQFLSYKE-----------KTNEIFFTIFNNFI------END----------------KQLFFSSDKS------------ 249 (450)
T ss_pred cccccCCH-----------HHHHHHHHHHHHHH------HcC----------------CcEEEECCCC------------
Confidence 99876321 25777777775211 011 1123343310
Q ss_pred CCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccC--ceEecCCCCHHHHHHHHhchhHHHHHHH
Q 038067 317 SSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFP--ILVSLSALNEDQLVQVLMEPKNALGRQY 394 (510)
Q Consensus 317 ~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~--~iv~f~~Ls~eel~~Il~~~~~~l~~~~ 394 (510)
|+++ ..+.+.+.+||. .++.+.+++.+++.+|+++.+
T Consensus 250 --------------------------------P~~l--~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~------- 288 (450)
T PRK14087 250 --------------------------------PELL--NGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEI------- 288 (450)
T ss_pred --------------------------------HHHH--hhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHH-------
Confidence 1111 236778899994 589999999999999998532
Q ss_pred HHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHHh
Q 038067 395 KKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMF 442 (510)
Q Consensus 395 ~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~ 442 (510)
...+..+.++++++++|++.. ...+|.|..++.+++..+..
T Consensus 289 ----~~~gl~~~l~~evl~~Ia~~~---~gd~R~L~gaL~~l~~~a~~ 329 (450)
T PRK14087 289 ----KNQNIKQEVTEEAINFISNYY---SDDVRKIKGSVSRLNFWSQQ 329 (450)
T ss_pred ----HhcCCCCCCCHHHHHHHHHcc---CCCHHHHHHHHHHHHHHHhc
Confidence 123444579999999999986 66799999999998755544
No 184
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.19 E-value=3.7e-10 Score=107.11 Aligned_cols=145 Identities=25% Similarity=0.361 Sum_probs=93.6
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCC------------------------eEEEeccccccccccccchhhHHHHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVP------------------------FTITDATALTQAGYVGEDAESVLYKLL 217 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p------------------------~~~~~~s~l~~~gy~G~~~~~~l~~l~ 217 (510)
.+..+||+||+|+|||++|+.+++.+... +..++... +-.+ ...++.+.
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~----~~~~---~~~i~~i~ 85 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG----QSIK---VDQVRELV 85 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc----CcCC---HHHHHHHH
Confidence 34679999999999999999999988321 11111100 0011 12333333
Q ss_pred HhhchhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCcee
Q 038067 218 AAADFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILF 297 (510)
Q Consensus 218 ~~~~~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilf 297 (510)
......-..+...||+|||+|++... .++.||+.||. ...+.+|
T Consensus 86 ~~~~~~~~~~~~kviiide~~~l~~~-------------~~~~Ll~~le~-----------------------~~~~~~~ 129 (188)
T TIGR00678 86 EFLSRTPQESGRRVVIIEDAERMNEA-------------AANALLKTLEE-----------------------PPPNTLF 129 (188)
T ss_pred HHHccCcccCCeEEEEEechhhhCHH-------------HHHHHHHHhcC-----------------------CCCCeEE
Confidence 33221112345679999999999765 58999999983 1123444
Q ss_pred ecCCCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHH
Q 038067 298 ICGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNED 377 (510)
Q Consensus 298 I~tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~e 377 (510)
|++++.. ..+.|.+.+|+. ++.|.+++.+
T Consensus 130 il~~~~~--------------------------------------------------~~l~~~i~sr~~-~~~~~~~~~~ 158 (188)
T TIGR00678 130 ILITPSP--------------------------------------------------EKLLPTIRSRCQ-VLPFPPLSEE 158 (188)
T ss_pred EEEECCh--------------------------------------------------HhChHHHHhhcE-EeeCCCCCHH
Confidence 5443300 125667888985 6799999999
Q ss_pred HHHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhh
Q 038067 378 QLVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKA 419 (510)
Q Consensus 378 el~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~ 419 (510)
++.+++.. .+ +++++++.|++.+
T Consensus 159 ~~~~~l~~---------------~g----i~~~~~~~i~~~~ 181 (188)
T TIGR00678 159 ALLQWLIR---------------QG----ISEEAAELLLALA 181 (188)
T ss_pred HHHHHHHH---------------cC----CCHHHHHHHHHHc
Confidence 99888864 12 6789999999875
No 185
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.19 E-value=6.7e-10 Score=115.55 Aligned_cols=59 Identities=20% Similarity=0.300 Sum_probs=42.0
Q ss_pred CchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHH
Q 038067 357 LIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLE 434 (510)
Q Consensus 357 ~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie 434 (510)
+.|.+++|+. .+.|.|++.+++.++++.. +....++++++..+++.+ ++..|...++++
T Consensus 184 llptIrSRc~-~i~l~pl~~~~~~~~L~~~---------------~~~~~~~~~~~~~i~~~s---~G~pr~Al~ll~ 242 (351)
T PRK09112 184 LLPTIRSRCQ-PISLKPLDDDELKKALSHL---------------GSSQGSDGEITEALLQRS---KGSVRKALLLLN 242 (351)
T ss_pred ccHHHHhhcc-EEEecCCCHHHHHHHHHHh---------------hcccCCCHHHHHHHHHHc---CCCHHHHHHHHh
Confidence 4678999994 6799999999999998741 111126788888888765 455666665553
No 186
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=1.4e-10 Score=131.47 Aligned_cols=188 Identities=24% Similarity=0.386 Sum_probs=130.0
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhC-----CCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVN-----VPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDE 236 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~-----~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDE 236 (510)
+|+.+||+||||||||++|+++|..+. ..|+.-+..+.- ..|+|+. +..++-+|+.+ ++..+.|||+||
T Consensus 298 pPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~l-skwvgEa-ERqlrllFeeA----~k~qPSIIffde 371 (1080)
T KOG0732|consen 298 PPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCL-SKWVGEA-ERQLRLLFEEA----QKTQPSIIFFDE 371 (1080)
T ss_pred CCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhh-ccccCcH-HHHHHHHHHHH----hccCceEEeccc
Confidence 778899999999999999999999882 234333444433 3599986 77788888876 567899999999
Q ss_pred hhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhccc
Q 038067 237 VDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQD 316 (510)
Q Consensus 237 idkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~ 316 (510)
||-+++.++.- .+.-...+...||.+|+|- ..++. +++|.++|..+
T Consensus 372 IdGlapvrSsk--qEqih~SIvSTLLaLmdGl-------------dsRgq--------VvvigATnRpd----------- 417 (1080)
T KOG0732|consen 372 IDGLAPVRSSK--QEQIHASIVSTLLALMDGL-------------DSRGQ--------VVVIGATNRPD----------- 417 (1080)
T ss_pred cccccccccch--HHHhhhhHHHHHHHhccCC-------------CCCCc--------eEEEcccCCcc-----------
Confidence 99888655321 1112224888999999862 11223 33343333110
Q ss_pred CCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhh--hcccCceEecCCCCHHHHHHHHhchhHHHHHHH
Q 038067 317 SSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEF--IGRFPILVSLSALNEDQLVQVLMEPKNALGRQY 394 (510)
Q Consensus 317 ~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pef--l~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~ 394 (510)
.+.|++ -+|||..+.|+-.+.++..+|+..
T Consensus 418 ---------------------------------------a~dpaLRRPgrfdref~f~lp~~~ar~~Il~I--------- 449 (1080)
T KOG0732|consen 418 ---------------------------------------AIDPALRRPGRFDREFYFPLPDVDARAKILDI--------- 449 (1080)
T ss_pred ---------------------------------------ccchhhcCCcccceeEeeeCCchHHHHHHHHH---------
Confidence 144555 579999999999999999999864
Q ss_pred HHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHHhc
Q 038067 395 KKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFE 443 (510)
Q Consensus 395 ~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~~ 443 (510)
......-.++...+.+|++. ..+++...|+.+.....+.++..
T Consensus 450 ----htrkw~~~i~~~l~~~la~~--t~gy~gaDlkaLCTeAal~~~~r 492 (1080)
T KOG0732|consen 450 ----HTRKWEPPISRELLLWLAEE--TSGYGGADLKALCTEAALIALRR 492 (1080)
T ss_pred ----hccCCCCCCCHHHHHHHHHh--ccccchHHHHHHHHHHhhhhhcc
Confidence 12234455788899999985 34455555888887777666654
No 187
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.14 E-value=1.3e-10 Score=111.53 Aligned_cols=166 Identities=26% Similarity=0.356 Sum_probs=107.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHHh-C----CCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchh
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIV-N----VPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVD 238 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l-~----~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEid 238 (510)
.|++|.||||||||+-+.+||+.+ | --++.+++++-. |-++-..--+.|.+....+-...+.||+|||+|
T Consensus 49 P~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeR-----GIDvVRn~IK~FAQ~kv~lp~grhKIiILDEAD 123 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDER-----GIDVVRNKIKMFAQKKVTLPPGRHKIIILDEAD 123 (333)
T ss_pred CceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcccc-----ccHHHHHHHHHHHHhhccCCCCceeEEEeeccc
Confidence 689999999999999999999988 4 245677777643 222222222333333222223566799999999
Q ss_pred hhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCC
Q 038067 239 KIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSS 318 (510)
Q Consensus 239 kl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~ 318 (510)
.+... .|++|.+.|| +.++-.-|.++.|-
T Consensus 124 SMT~g-------------AQQAlRRtME-----------------------iyS~ttRFalaCN~--------------- 152 (333)
T KOG0991|consen 124 SMTAG-------------AQQALRRTME-----------------------IYSNTTRFALACNQ--------------- 152 (333)
T ss_pred hhhhH-------------HHHHHHHHHH-----------------------HHcccchhhhhhcc---------------
Confidence 98754 6999999998 22222334444441
Q ss_pred CCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHH
Q 038067 319 IGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMF 398 (510)
Q Consensus 319 ~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~ 398 (510)
...++.++-+|+.. +.|..|+..++..-+.. +
T Consensus 153 -----------------------------------s~KIiEPIQSRCAi-LRysklsd~qiL~Rl~~----v-------- 184 (333)
T KOG0991|consen 153 -----------------------------------SEKIIEPIQSRCAI-LRYSKLSDQQILKRLLE----V-------- 184 (333)
T ss_pred -----------------------------------hhhhhhhHHhhhHh-hhhcccCHHHHHHHHHH----H--------
Confidence 01255677788865 48999998765443321 1
Q ss_pred hcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHH
Q 038067 399 SMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENIL 437 (510)
Q Consensus 399 ~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l 437 (510)
.+..++.++++.++.|.-.+ .+..|+--+.++..+
T Consensus 185 -~k~Ekv~yt~dgLeaiifta---~GDMRQalNnLQst~ 219 (333)
T KOG0991|consen 185 -AKAEKVNYTDDGLEAIIFTA---QGDMRQALNNLQSTV 219 (333)
T ss_pred -HHHhCCCCCcchHHHhhhhc---cchHHHHHHHHHHHh
Confidence 12345678999999998764 566777666666544
No 188
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=1.3e-09 Score=113.94 Aligned_cols=188 Identities=22% Similarity=0.273 Sum_probs=119.5
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCC-----eEEEeccccccc--------------cccccchhhHHHHHHHhhch
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVP-----FTITDATALTQA--------------GYVGEDAESVLYKLLAAADF 222 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p-----~~~~~~s~l~~~--------------gy~G~~~~~~l~~l~~~~~~ 222 (510)
.|.|++++||||||||.+++.+.+.+..+ ++++||..+..+ -..|......+..+.+.-
T Consensus 41 ~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~-- 118 (366)
T COG1474 41 RPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNL-- 118 (366)
T ss_pred CCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHH--
Confidence 55689999999999999999999998433 899999877642 011222122222222111
Q ss_pred hHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCC
Q 038067 223 DVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGA 302 (510)
Q Consensus 223 ~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~ 302 (510)
-.....-||+|||+|.|.... ++.|+.++.-. .. ..+++.+|+.+|
T Consensus 119 -~~~~~~~IvvLDEid~L~~~~-------------~~~LY~L~r~~-------~~-------------~~~~v~vi~i~n 164 (366)
T COG1474 119 -SKKGKTVIVILDEVDALVDKD-------------GEVLYSLLRAP-------GE-------------NKVKVSIIAVSN 164 (366)
T ss_pred -HhcCCeEEEEEcchhhhcccc-------------chHHHHHHhhc-------cc-------------cceeEEEEEEec
Confidence 012455799999999998652 24555555300 00 145667777666
Q ss_pred ccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCc-eEecCCCCHHHHHH
Q 038067 303 FVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPI-LVSLSALNEDQLVQ 381 (510)
Q Consensus 303 ~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~-iv~f~~Ls~eel~~ 381 (510)
...+.+. +.|-+.+|+.. -|.|+|++.+++..
T Consensus 165 ~~~~~~~-----------------------------------------------ld~rv~s~l~~~~I~F~pY~a~el~~ 197 (366)
T COG1474 165 DDKFLDY-----------------------------------------------LDPRVKSSLGPSEIVFPPYTAEELYD 197 (366)
T ss_pred cHHHHHH-----------------------------------------------hhhhhhhccCcceeeeCCCCHHHHHH
Confidence 3322222 44444555533 37999999999999
Q ss_pred HHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHHhc
Q 038067 382 VLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFE 443 (510)
Q Consensus 382 Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~~ 443 (510)
|+...... .-..-.+++++++.++..+....+.||-.-.+++....-+-.+
T Consensus 198 Il~~R~~~-----------~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~ 248 (366)
T COG1474 198 ILRERVEE-----------GFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAERE 248 (366)
T ss_pred HHHHHHHh-----------hccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhh
Confidence 99852211 1123347899999999887666778998888888766555443
No 189
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.11 E-value=2.5e-10 Score=126.56 Aligned_cols=35 Identities=26% Similarity=0.531 Sum_probs=29.0
Q ss_pred HHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeee
Q 038067 225 EAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNV 272 (510)
Q Consensus 225 ~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i 272 (510)
.++++|+|||||++.|.+. +|..|+++|+.+.+.+
T Consensus 223 ~kAnGGtL~LDei~~L~~~-------------~q~~Llr~L~~~~i~i 257 (637)
T PRK13765 223 HKAHKGVLFIDEINTLDLE-------------SQQSLLTAMQEKKFPI 257 (637)
T ss_pred eECCCcEEEEeChHhCCHH-------------HHHHHHHHHHhCCEEe
Confidence 4677899999999999654 7999999998766654
No 190
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.10 E-value=7.4e-10 Score=114.93 Aligned_cols=187 Identities=22% Similarity=0.276 Sum_probs=112.0
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhC-CCeEEEec----c--cc-----------------c-c---cccc----ccch
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVN-VPFTITDA----T--AL-----------------T-Q---AGYV----GEDA 209 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~-~p~~~~~~----s--~l-----------------~-~---~gy~----G~~~ 209 (510)
.-.++|+.|+.|||||+++|+||..|. ...+. .| . +- . . ..++ |...
T Consensus 37 ~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~-gc~f~cdP~~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ate 115 (423)
T COG1239 37 QIGGALIAGEKGTAKSTLARALADLLPEIEVVI-GCPFNCDPDDPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATE 115 (423)
T ss_pred ccceeEEecCCCccHHHHHHHHHHhCCccceec-CCCCCCCCCChhhhhHHHHhhccccccccccceecceecCCCccch
Confidence 336899999999999999999999993 22111 11 0 00 0 0 0011 1110
Q ss_pred hhH-----HHHHHH-----hhchhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCC
Q 038067 210 ESV-----LYKLLA-----AADFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGP 279 (510)
Q Consensus 210 ~~~-----l~~l~~-----~~~~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~ 279 (510)
... +...++ -.++.+.+++.||+|+||+..|... +++.||.+++.++.++. ..|-
T Consensus 116 DrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~-------------lvd~LLd~aaeG~n~ve--reGi 180 (423)
T COG1239 116 DRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDH-------------LVDALLDVAAEGVNDVE--REGI 180 (423)
T ss_pred hhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHH-------------HHHHHHHHHHhCCceee--eCce
Confidence 101 111111 1245677899999999999998765 99999999997644443 4554
Q ss_pred CCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCch
Q 038067 280 RKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIP 359 (510)
Q Consensus 280 ~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~P 359 (510)
..... .++++|.|.|.. ..-++|
T Consensus 181 si~hp--------a~fvligTmNPE-------------------------------------------------eGeLrp 203 (423)
T COG1239 181 SIRHP--------ARFLLIGTMNPE-------------------------------------------------EGELRP 203 (423)
T ss_pred eeccC--------ccEEEEeecCcc-------------------------------------------------ccccch
Confidence 33333 455566665521 122899
Q ss_pred hhhcccCceEecCCCC-HHHHHHHHhchhHH------HHHHHHHHHh--------c--CCceeeeCHHHHHHHHHhhCC
Q 038067 360 EFIGRFPILVSLSALN-EDQLVQVLMEPKNA------LGRQYKKMFS--------M--NNVKLHFTDDALRLIAKKAMA 421 (510)
Q Consensus 360 efl~R~~~iv~f~~Ls-~eel~~Il~~~~~~------l~~~~~~~~~--------~--~~~~l~is~~al~~La~~~~~ 421 (510)
.|+.||...|...+.. .++...|+++.... +.++|..... + .-..+.+++.+..+++..+..
T Consensus 204 qLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~f~~~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~~ 282 (423)
T COG1239 204 QLLDRFGLEVDTHYPLDLEERVEIIRRRLAFEAVPEAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAELCAR 282 (423)
T ss_pred hhHhhhcceeeccCCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHHHH
Confidence 9999999877776654 57777777665431 2233322111 1 123456788888888876643
No 191
>PRK06620 hypothetical protein; Validated
Probab=99.08 E-value=1.5e-09 Score=105.46 Aligned_cols=63 Identities=13% Similarity=0.274 Sum_probs=50.4
Q ss_pred hhhhcccC--ceEecCCCCHHHHHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHH
Q 038067 359 PEFIGRFP--ILVSLSALNEDQLVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENI 436 (510)
Q Consensus 359 Pefl~R~~--~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~ 436 (510)
|.+++|+. .++.+.+++.+++..++.+.. .. ..+.++++++++|++.. ...+|.+.++++++
T Consensus 130 ~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~-----------~~--~~l~l~~ev~~~L~~~~---~~d~r~l~~~l~~l 193 (214)
T PRK06620 130 PDLSSRIKSVLSILLNSPDDELIKILIFKHF-----------SI--SSVTISRQIIDFLLVNL---PREYSKIIEILENI 193 (214)
T ss_pred HHHHHHHhCCceEeeCCCCHHHHHHHHHHHH-----------HH--cCCCCCHHHHHHHHHHc---cCCHHHHHHHHHHH
Confidence 78999996 368999999999888886521 11 24679999999999986 66799999999985
Q ss_pred H
Q 038067 437 L 437 (510)
Q Consensus 437 l 437 (510)
-
T Consensus 194 ~ 194 (214)
T PRK06620 194 N 194 (214)
T ss_pred H
Confidence 4
No 192
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=99.08 E-value=1.2e-09 Score=120.40 Aligned_cols=192 Identities=11% Similarity=0.088 Sum_probs=122.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhC--CCeEEEecccccccccccc-chhhHHHHHH-HhhchhHHHhcCcEEEEcchhh
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVN--VPFTITDATALTQAGYVGE-DAESVLYKLL-AAADFDVEAAQRGIVYIDEVDK 239 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~--~p~~~~~~s~l~~~gy~G~-~~~~~l~~l~-~~~~~~~~~~~~~Vl~iDEidk 239 (510)
+++++.|+.||+||++++.++..+. .||+....+.-.. ..+|- +.+..+..-. .-.++.+..+++|||||||+..
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~-~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~ 104 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADD-RLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMAER 104 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHH-HccCCchHHhHhhcCCcCCCCCceeeccCCEEEecCccc
Confidence 6799999999999999999999984 4777665543322 23332 1111111101 1235667788999999999999
Q ss_pred hhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCC
Q 038067 240 IVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSI 319 (510)
Q Consensus 240 l~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~ 319 (510)
+.+. +++.|++.||.+.++|. +.|.......+ +++|+|-+-.
T Consensus 105 ~~~~-------------~~~aLleame~G~vtIe--R~G~s~~~Pa~--------F~LIat~~~~--------------- 146 (584)
T PRK13406 105 LEPG-------------TAARLAAALDTGEVRLE--RDGLALRLPAR--------FGLVALDEGA--------------- 146 (584)
T ss_pred CCHH-------------HHHHHHHHHhCCcEEEE--ECCcEEecCCC--------cEEEecCCCh---------------
Confidence 8765 89999999998888886 55654443333 4444431100
Q ss_pred CcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHh
Q 038067 320 GFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFS 399 (510)
Q Consensus 320 gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~ 399 (510)
+ ..+.+++++++||+..|.+.+++..+...-.. ...-+...++++.
T Consensus 147 -------------------------------~-~~~~L~~~lLDRf~l~v~v~~~~~~~~~~~~~--~~~~I~~AR~rl~ 192 (584)
T PRK13406 147 -------------------------------E-EDERAPAALADRLAFHLDLDGLALRDAREIPI--DADDIAAARARLP 192 (584)
T ss_pred -------------------------------h-cccCCCHHhHhheEEEEEcCCCChHHhcccCC--CHHHHHHHHHHHc
Confidence 0 01347889999999999999999876543111 1111222233331
Q ss_pred cCCceeeeCHHHHHHHHHhhCCCCC-ChhHHHHH
Q 038067 400 MNNVKLHFTDDALRLIAKKAMAKNT-GARGLRAL 432 (510)
Q Consensus 400 ~~~~~l~is~~al~~La~~~~~~~~-gaR~L~~~ 432 (510)
++.++++.++++++.+...+. +.|....+
T Consensus 193 ----~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~l 222 (584)
T PRK13406 193 ----AVGPPPEAIAALCAAAAALGIASLRAPLLA 222 (584)
T ss_pred ----cCCCCHHHHHHHHHHHHHhCCCCcCHHHHH
Confidence 466788888888776554443 44554433
No 193
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.07 E-value=3.1e-09 Score=111.11 Aligned_cols=26 Identities=38% Similarity=0.551 Sum_probs=23.6
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
-+..+||+||+|+||+++|.++|+.+
T Consensus 40 l~HA~Lf~Gp~G~GK~~lA~~~A~~L 65 (365)
T PRK07471 40 LHHAWLIGGPQGIGKATLAYRMARFL 65 (365)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 34569999999999999999999988
No 194
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.05 E-value=1.5e-09 Score=96.04 Aligned_cols=88 Identities=34% Similarity=0.526 Sum_probs=58.5
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccccccccccchhhHHHH-HHHhhchhHHHhcCcEEEEcch
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALTQAGYVGEDAESVLYK-LLAAADFDVEAAQRGIVYIDEV 237 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~~~gy~G~~~~~~l~~-l~~~~~~~~~~~~~~Vl~iDEi 237 (510)
...+++++||||||||++++.+++.+ +.+++.+++........ . ...... .............+++|+|||+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~lilDe~ 93 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLV-V---AELFGHFLVRLLFELAEKAKPGVLFIDEI 93 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhH-H---HHHhhhhhHhHHHHhhccCCCeEEEEeCh
Confidence 34689999999999999999999998 88999999887653211 0 000000 0000001112346789999999
Q ss_pred hhhhhhccCCCCCCCchhhHHHHHHHHhh
Q 038067 238 DKIVKAESRNNGRDVSGEGVQQALLKMLE 266 (510)
Q Consensus 238 dkl~~~~~~~~~~~~~~~~v~~~LL~~le 266 (510)
+.+... ....++++++
T Consensus 94 ~~~~~~-------------~~~~~~~~i~ 109 (151)
T cd00009 94 DSLSRG-------------AQNALLRVLE 109 (151)
T ss_pred hhhhHH-------------HHHHHHHHHH
Confidence 998443 4667777776
No 195
>PRK04132 replication factor C small subunit; Provisional
Probab=99.05 E-value=1.1e-09 Score=124.30 Aligned_cols=165 Identities=21% Similarity=0.265 Sum_probs=118.0
Q ss_pred cCceEEEEc--cCCChHHHHHHHHHHHh-----CCCeEEEeccccccccccccchhhHHHHHHHhhch--hHHHhcCcEE
Q 038067 162 EKSNVLLMG--PTGSGKTLLAKTLARIV-----NVPFTITDATALTQAGYVGEDAESVLYKLLAAADF--DVEAAQRGIV 232 (510)
Q Consensus 162 ~~~~vLL~G--PpGtGKT~lAr~lA~~l-----~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~--~~~~~~~~Vl 232 (510)
|+-+-+..| |++.|||++|+++|+.+ +.+++.+|+++.... ..++..+..... .+......|+
T Consensus 563 ~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgi--------d~IR~iIk~~a~~~~~~~~~~KVv 634 (846)
T PRK04132 563 PGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGI--------NVIREKVKEFARTKPIGGASFKII 634 (846)
T ss_pred CchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccH--------HHHHHHHHHHHhcCCcCCCCCEEE
Confidence 666778889 99999999999999998 458999999985321 233433322110 0001134699
Q ss_pred EEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHh
Q 038067 233 YIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISE 312 (510)
Q Consensus 233 ~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~ 312 (510)
+|||+|.|... .|++|++.||. ...++.||+++|..
T Consensus 635 IIDEaD~Lt~~-------------AQnALLk~lEe-----------------------p~~~~~FILi~N~~-------- 670 (846)
T PRK04132 635 FLDEADALTQD-------------AQQALRRTMEM-----------------------FSSNVRFILSCNYS-------- 670 (846)
T ss_pred EEECcccCCHH-------------HHHHHHHHhhC-----------------------CCCCeEEEEEeCCh--------
Confidence 99999999865 69999999982 23456777776611
Q ss_pred hcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHHH
Q 038067 313 RRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGR 392 (510)
Q Consensus 313 ~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~ 392 (510)
..+.|++++|+.. +.|.+++.+++..++.. +.
T Consensus 671 ------------------------------------------~kIi~tIrSRC~~-i~F~~ls~~~i~~~L~~----I~- 702 (846)
T PRK04132 671 ------------------------------------------SKIIEPIQSRCAI-FRFRPLRDEDIAKRLRY----IA- 702 (846)
T ss_pred ------------------------------------------hhCchHHhhhceE-EeCCCCCHHHHHHHHHH----HH-
Confidence 1267889999855 59999999999888763 21
Q ss_pred HHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHH
Q 038067 393 QYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENIL 437 (510)
Q Consensus 393 ~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l 437 (510)
..++ +.++++++..|+..+ +++.|..-+.++.+.
T Consensus 703 ------~~Eg--i~i~~e~L~~Ia~~s---~GDlR~AIn~Lq~~~ 736 (846)
T PRK04132 703 ------ENEG--LELTEEGLQAILYIA---EGDMRRAINILQAAA 736 (846)
T ss_pred ------HhcC--CCCCHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 1123 557899999999986 667888888888654
No 196
>PRK09087 hypothetical protein; Validated
Probab=99.04 E-value=1.4e-09 Score=106.56 Aligned_cols=70 Identities=11% Similarity=0.203 Sum_probs=52.3
Q ss_pred CchhhhcccC--ceEecCCCCHHHHHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHH
Q 038067 357 LIPEFIGRFP--ILVSLSALNEDQLVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLE 434 (510)
Q Consensus 357 ~~Pefl~R~~--~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie 434 (510)
..|.+++|+. .++.+.+++.+++.+|+.+.+ .. ..+.++++++++|++.. ....|.+..++.
T Consensus 134 ~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~-----------~~--~~~~l~~ev~~~La~~~---~r~~~~l~~~l~ 197 (226)
T PRK09087 134 KLPDLKSRLKAATVVEIGEPDDALLSQVIFKLF-----------AD--RQLYVDPHVVYYLVSRM---ERSLFAAQTIVD 197 (226)
T ss_pred ccccHHHHHhCCceeecCCCCHHHHHHHHHHHH-----------HH--cCCCCCHHHHHHHHHHh---hhhHHHHHHHHH
Confidence 3678999995 578999999999999998522 11 24679999999999986 345677777777
Q ss_pred HHHHHHHh
Q 038067 435 NILTEAMF 442 (510)
Q Consensus 435 ~~l~~~l~ 442 (510)
++-..++.
T Consensus 198 ~L~~~~~~ 205 (226)
T PRK09087 198 RLDRLALE 205 (226)
T ss_pred HHHHHHHH
Confidence 76544443
No 197
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.03 E-value=6.9e-09 Score=102.58 Aligned_cols=61 Identities=21% Similarity=0.398 Sum_probs=47.2
Q ss_pred cCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHH
Q 038067 355 YGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLE 434 (510)
Q Consensus 355 ~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie 434 (510)
.|+.|++++|+-+ |.-.+++++++++|++. .+.-..+.++++++..|+..+ .-+.||-+++
T Consensus 349 hGip~dllDRl~I-irt~~y~~~e~r~Ii~~-------------Ra~~E~l~~~e~a~~~l~~~g-----t~tsLRy~vq 409 (456)
T KOG1942|consen 349 HGIPPDLLDRLLI-IRTLPYDEEEIRQIIKI-------------RAQVEGLQVEEEALDLLAEIG-----TSTSLRYAVQ 409 (456)
T ss_pred CCCCHHHhhheeE-EeeccCCHHHHHHHHHH-------------HHhhhcceecHHHHHHHHhhc-----cchhHHHHHH
Confidence 4688899999954 58899999999999974 223345778999999999863 2467777776
No 198
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.02 E-value=2e-09 Score=103.98 Aligned_cols=150 Identities=25% Similarity=0.399 Sum_probs=98.5
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVD 238 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEid 238 (510)
+..|+||+|..|||||+++|++...+ +..++.++-.++..- .. +-+.++.. ...=|||+|+.-
T Consensus 84 pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~L-------p~-l~~~Lr~~------~~kFIlFcDDLS 149 (287)
T COG2607 84 PANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLATL-------PD-LVELLRAR------PEKFILFCDDLS 149 (287)
T ss_pred cccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHhhH-------HH-HHHHHhcC------CceEEEEecCCC
Confidence 66899999999999999999998888 567888888887632 22 22333332 244699999754
Q ss_pred hhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccch-HHHHHhhcccC
Q 038067 239 KIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGL-EKTISERRQDS 317 (510)
Q Consensus 239 kl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l-~~~i~~~~~~~ 317 (510)
= .+ ++.-...|..+|||+..-.| .|++|.+|+|-..| .+.+.+
T Consensus 150 F---e~---------gd~~yK~LKs~LeG~ve~rP-------------------~NVl~YATSNRRHLl~e~~~d----- 193 (287)
T COG2607 150 F---EE---------GDDAYKALKSALEGGVEGRP-------------------ANVLFYATSNRRHLLPEDMKD----- 193 (287)
T ss_pred C---CC---------CchHHHHHHHHhcCCcccCC-------------------CeEEEEEecCCcccccHhhhh-----
Confidence 3 11 12368889999998665433 56777777773321 111111
Q ss_pred CCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhc
Q 038067 318 SIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLME 385 (510)
Q Consensus 318 ~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~ 385 (510)
+.++. ..+.|.|-+.+.+ .|-.||..++.|.|.+.+++..|+..
T Consensus 194 n~~~~----------------------~eih~~eaveEKl--SlSDRFGLwL~F~~~~Q~~YL~~V~~ 237 (287)
T COG2607 194 NEGST----------------------GEIHPSEAVEEKL--SLSDRFGLWLSFYPCDQDEYLKIVDH 237 (287)
T ss_pred CCCcc----------------------cccChhHHHHHhh--chhhhcceeecccCCCHHHHHHHHHH
Confidence 11111 2334444444433 46679999999999999999999974
No 199
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.02 E-value=2.3e-09 Score=116.74 Aligned_cols=94 Identities=22% Similarity=0.264 Sum_probs=69.9
Q ss_pred chhhhccCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEc
Q 038067 156 DEIVELEKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYID 235 (510)
Q Consensus 156 ~~~~~~~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iD 235 (510)
+...+++.+-+||+||||-|||+||..+|+..|+.++.+++++-..+ ..+...+..+++.....-.-..+..|+||
T Consensus 319 ~~s~RP~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~----~~v~~kI~~avq~~s~l~adsrP~CLViD 394 (877)
T KOG1969|consen 319 DPSKRPPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTA----PMVKEKIENAVQNHSVLDADSRPVCLVID 394 (877)
T ss_pred CccCCCccceEEeecCCCCChhHHHHHHHHhcCceEEEecccccccH----HHHHHHHHHHHhhccccccCCCcceEEEe
Confidence 44455677889999999999999999999999999999999987633 22344444554443222122467789999
Q ss_pred chhhhhhhccCCCCCCCchhhHHHHHHHHhh
Q 038067 236 EVDKIVKAESRNNGRDVSGEGVQQALLKMLE 266 (510)
Q Consensus 236 Eidkl~~~~~~~~~~~~~~~~v~~~LL~~le 266 (510)
|||-..++ ..+.++.++.
T Consensus 395 EIDGa~~~-------------~Vdvilslv~ 412 (877)
T KOG1969|consen 395 EIDGAPRA-------------AVDVILSLVK 412 (877)
T ss_pred cccCCcHH-------------HHHHHHHHHH
Confidence 99986544 6888888887
No 200
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=5.6e-09 Score=116.57 Aligned_cols=169 Identities=25% Similarity=0.326 Sum_probs=117.4
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh----------CCCeEEEeccccc-cccccccchhhHHHHHHHhhchhHHHhcCc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV----------NVPFTITDATALT-QAGYVGEDAESVLYKLLAAADFDVEAAQRG 230 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l----------~~p~~~~~~s~l~-~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~ 230 (510)
.+.|-+|+|+||+|||.+++.+|... +..++.+|++.+. .+.|.|+- +..+..++.. +.++.+-
T Consensus 190 ~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeF-EeRlk~vl~e----v~~~~~v 264 (786)
T COG0542 190 TKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEF-EERLKAVLKE----VEKSKNV 264 (786)
T ss_pred CCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcH-HHHHHHHHHH----HhcCCCe
Confidence 66789999999999999999999766 4567888888876 34687774 6666666654 3455688
Q ss_pred EEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHH
Q 038067 231 IVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTI 310 (510)
Q Consensus 231 Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i 310 (510)
|||||||+.+..+....++ ..+.-+.|..+|..+... .|.+++..+-.+++
T Consensus 265 ILFIDEiHtiVGAG~~~G~----a~DAaNiLKPaLARGeL~-------------------------~IGATT~~EYRk~i 315 (786)
T COG0542 265 ILFIDEIHTIVGAGATEGG----AMDAANLLKPALARGELR-------------------------CIGATTLDEYRKYI 315 (786)
T ss_pred EEEEechhhhcCCCccccc----ccchhhhhHHHHhcCCeE-------------------------EEEeccHHHHHHHh
Confidence 9999999999977554332 123788888898633222 22233322211121
Q ss_pred HhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHH
Q 038067 311 SERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNAL 390 (510)
Q Consensus 311 ~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l 390 (510)
. -.++|-.||..+ .+..++.++-..|++- +
T Consensus 316 E---------------------------------------------KD~AL~RRFQ~V-~V~EPs~e~ti~ILrG----l 345 (786)
T COG0542 316 E---------------------------------------------KDAALERRFQKV-LVDEPSVEDTIAILRG----L 345 (786)
T ss_pred h---------------------------------------------hchHHHhcCcee-eCCCCCHHHHHHHHHH----H
Confidence 1 356788899776 8999999999999984 5
Q ss_pred HHHHHHHHhcCCceeeeCHHHHHHHHHhh
Q 038067 391 GRQYKKMFSMNNVKLHFTDDALRLIAKKA 419 (510)
Q Consensus 391 ~~~~~~~~~~~~~~l~is~~al~~La~~~ 419 (510)
...|.. ...+.++++|+...+..+
T Consensus 346 k~~yE~-----hH~V~i~D~Al~aAv~LS 369 (786)
T COG0542 346 KERYEA-----HHGVRITDEALVAAVTLS 369 (786)
T ss_pred HHHHHH-----ccCceecHHHHHHHHHHH
Confidence 555543 234667888888777654
No 201
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=99.01 E-value=1.4e-09 Score=120.20 Aligned_cols=217 Identities=19% Similarity=0.239 Sum_probs=121.2
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
..-|+||.|.||||||.+.+.+++.+-.. ++.+...-+..|....-.....+.-+.-..+.+-.+.+||.+|||+|||.
T Consensus 318 GDInILLvGDPgtaKSqlLk~v~~~aPr~-vytsgkgss~~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~ 396 (682)
T COG1241 318 GDIHILLVGDPGTAKSQLLKYVAKLAPRG-VYTSGKGSSAAGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMN 396 (682)
T ss_pred cceeEEEcCCCchhHHHHHHHHHhhCCce-EEEccccccccCceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCC
Confidence 44699999999999999999999988332 23333322222221111000000000001122334678999999999997
Q ss_pred hhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCc
Q 038067 242 KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGF 321 (510)
Q Consensus 242 ~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf 321 (510)
.. ...+|..+||...+.|. ..| .+ ..--+++-++++.|.. |
T Consensus 397 ~~-------------dr~aihEaMEQQtIsIa--KAG-I~-------atLnARcsvLAAaNP~----------------~ 437 (682)
T COG1241 397 EE-------------DRVAIHEAMEQQTISIA--KAG-IT-------ATLNARCSVLAAANPK----------------F 437 (682)
T ss_pred hH-------------HHHHHHHHHHhcEeeec--ccc-ee-------eecchhhhhhhhhCCC----------------C
Confidence 65 58999999997777664 233 11 1111334455555521 1
Q ss_pred CcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecC-CCCHHHHHHHHhchhHH-----------
Q 038067 322 GAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLS-ALNEDQLVQVLMEPKNA----------- 389 (510)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~-~Ls~eel~~Il~~~~~~----------- 389 (510)
+.-.. ...+.++ -.+.|+|++|||.++.+. .++++.-..|.++.+..
T Consensus 438 Gryd~-------------~~~~~en--------I~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~ 496 (682)
T COG1241 438 GRYDP-------------KKTVAEN--------INLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETIS 496 (682)
T ss_pred CcCCC-------------CCCHHHh--------cCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHHHhccccccccc
Confidence 11000 0011111 238899999999985544 44444334444432221
Q ss_pred -------------HHHHHHHHHhcCCceeeeCHHHHHHHHHhhCC--C-----------CCChhHHHHHHHHHHHHH
Q 038067 390 -------------LGRQYKKMFSMNNVKLHFTDDALRLIAKKAMA--K-----------NTGARGLRALLENILTEA 440 (510)
Q Consensus 390 -------------l~~~~~~~~~~~~~~l~is~~al~~La~~~~~--~-----------~~gaR~L~~~ie~~l~~~ 440 (510)
+++.|... +...+...++++|.+.|.++-.. . ...+|.|.++|+-.-..|
T Consensus 497 ~~~~~~~~~~~~~~lrkYI~Y-AR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~A 572 (682)
T COG1241 497 LDGVDEVEERDFELLRKYISY-ARKNVTPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIRLAEAHA 572 (682)
T ss_pred cccccccccCcHHHHHHHHHH-HhccCCcccCHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHHHHHHHH
Confidence 24555543 23346678999999999876221 1 134799998887444333
No 202
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.99 E-value=2e-08 Score=100.24 Aligned_cols=72 Identities=17% Similarity=0.205 Sum_probs=53.0
Q ss_pred hhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHH
Q 038067 360 EFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTE 439 (510)
Q Consensus 360 efl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~ 439 (510)
.+.+|+...+.+++++.+++.+++...+ .. ........+++++++.|++.+ .+..|.+..+...++..
T Consensus 178 ~l~~r~~~~~~l~~l~~~e~~~~l~~~l----~~-----~g~~~~~~~~~~~~~~i~~~s---~G~p~~i~~l~~~~~~~ 245 (269)
T TIGR03015 178 QLRQRIIASCHLGPLDREETREYIEHRL----ER-----AGNRDAPVFSEGAFDAIHRFS---RGIPRLINILCDRLLLS 245 (269)
T ss_pred HHHhheeeeeeCCCCCHHHHHHHHHHHH----HH-----cCCCCCCCcCHHHHHHHHHHc---CCcccHHHHHHHHHHHH
Confidence 5778888889999999999998887522 11 011223458999999999986 44578898888888877
Q ss_pred HHhc
Q 038067 440 AMFE 443 (510)
Q Consensus 440 ~l~~ 443 (510)
+..+
T Consensus 246 a~~~ 249 (269)
T TIGR03015 246 AFLE 249 (269)
T ss_pred HHHc
Confidence 6663
No 203
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.98 E-value=1.2e-08 Score=104.84 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=23.8
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
-++.+||+||+|+||+++|+++|+.+
T Consensus 25 l~ha~Lf~G~~G~Gk~~~A~~~a~~l 50 (314)
T PRK07399 25 IAPAYLFAGPEGVGRKLAALCFIEGL 50 (314)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999988
No 204
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.97 E-value=9.4e-09 Score=106.21 Aligned_cols=35 Identities=29% Similarity=0.358 Sum_probs=30.4
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCC-------CeEEEec
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNV-------PFTITDA 196 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~-------p~~~~~~ 196 (510)
.+.-++|+||||+|||++|++|++.++. |+..+..
T Consensus 77 ~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 3456999999999999999999999965 8888776
No 205
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.96 E-value=3.8e-09 Score=104.48 Aligned_cols=200 Identities=20% Similarity=0.298 Sum_probs=123.2
Q ss_pred ccCceEEEEccCCChHHHHHHHHHHH------hCCCeEEEecccccccc----ccccchhhHHHHHHHhhchhHHHhcCc
Q 038067 161 LEKSNVLLMGPTGSGKTLLAKTLARI------VNVPFTITDATALTQAG----YVGEDAESVLYKLLAAADFDVEAAQRG 230 (510)
Q Consensus 161 ~~~~~vLL~GPpGtGKT~lAr~lA~~------l~~p~~~~~~s~l~~~g----y~G~~~~~~l~~l~~~~~~~~~~~~~~ 230 (510)
.++.++||.||+|.||++||+.+.+. +.-+|+.++|..+...+ .+|+ +.+.++..-....+.++.+.+|
T Consensus 206 rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfgh-vkgaftga~~~r~gllrsadgg 284 (531)
T COG4650 206 RSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGH-VKGAFTGARESREGLLRSADGG 284 (531)
T ss_pred hccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhh-hccccccchhhhhhhhccCCCc
Confidence 47789999999999999999998754 36799999999886421 3344 2444444444555667788999
Q ss_pred EEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHH
Q 038067 231 IVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTI 310 (510)
Q Consensus 231 Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i 310 (510)
.+|+|||..+... -|..||+.+|...+. ..|.-. . -.+.+-+|+ |+..+|.+.+
T Consensus 285 mlfldeigelgad-------------eqamllkaieekrf~----pfgsdr-------~-v~sdfqlia-gtvrdlrq~v 338 (531)
T COG4650 285 MLFLDEIGELGAD-------------EQAMLLKAIEEKRFY----PFGSDR-------Q-VSSDFQLIA-GTVRDLRQLV 338 (531)
T ss_pred eEehHhhhhcCcc-------------HHHHHHHHHHhhccC----CCCCcc-------c-cccchHHhh-hhHHHHHHHH
Confidence 9999999998754 499999999965443 122111 1 122333332 4433333333
Q ss_pred HhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCce-EecCCCC--HHHHHHHHhchh
Q 038067 311 SERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPIL-VSLSALN--EDQLVQVLMEPK 387 (510)
Q Consensus 311 ~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~i-v~f~~Ls--~eel~~Il~~~~ 387 (510)
.+ ..|+..+..||..+ +.++.|. .++++--+.-
T Consensus 339 ae------------------------------------------g~fredl~arinlwtf~lpgl~qr~ediepnldy-- 374 (531)
T COG4650 339 AE------------------------------------------GKFREDLYARINLWTFTLPGLRQRQEDIEPNLDY-- 374 (531)
T ss_pred hc------------------------------------------cchHHHHHHhhheeeeeccccccCccccCCCccH--
Confidence 22 23677788888876 3444442 2333222221
Q ss_pred HHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCC----CCCChhHHHHHHHHH
Q 038067 388 NALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMA----KNTGARGLRALLENI 436 (510)
Q Consensus 388 ~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~----~~~gaR~L~~~ie~~ 436 (510)
-+... ....|..+.+.-++.+.....+.+ |.++-|.|-..+.++
T Consensus 375 --elerh---a~~~g~~vrfntearra~l~fa~spqa~w~gnfrelsasvtrm 422 (531)
T COG4650 375 --ELERH---ASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRM 422 (531)
T ss_pred --HHHHH---HHhhCceeeeehHHHHHHHHhccCcchhhcccHHHHhHHHHHH
Confidence 11111 123577888888887766555432 455678877766653
No 206
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.95 E-value=5.9e-10 Score=100.57 Aligned_cols=72 Identities=36% Similarity=0.661 Sum_probs=54.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhC---CCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVN---VPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVD 238 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~---~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEid 238 (510)
...+|+|+|++||||+++|++|+.... .||+.++|..+. .+++.. +.+++|||+|||
T Consensus 20 ~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-------------~~~l~~-------a~~gtL~l~~i~ 79 (138)
T PF14532_consen 20 SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-------------AELLEQ-------AKGGTLYLKNID 79 (138)
T ss_dssp SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-------------HHHHHH-------CTTSEEEEECGC
T ss_pred CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-------------HHHHHH-------cCCCEEEECChH
Confidence 557899999999999999999999884 366667776532 123322 477999999999
Q ss_pred hhhhhccCCCCCCCchhhHHHHHHHHhh
Q 038067 239 KIVKAESRNNGRDVSGEGVQQALLKMLE 266 (510)
Q Consensus 239 kl~~~~~~~~~~~~~~~~v~~~LL~~le 266 (510)
.++.. .|..|+.+|+
T Consensus 80 ~L~~~-------------~Q~~L~~~l~ 94 (138)
T PF14532_consen 80 RLSPE-------------AQRRLLDLLK 94 (138)
T ss_dssp CS-HH-------------HHHHHHHHHH
T ss_pred HCCHH-------------HHHHHHHHHH
Confidence 99876 7999999997
No 207
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.94 E-value=6e-09 Score=106.48 Aligned_cols=85 Identities=29% Similarity=0.355 Sum_probs=57.8
Q ss_pred eEEEEccCCChHHHHHHHHHHHhC------------------------CCeEEEeccccccccccccchhhHHHHHHHhh
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIVN------------------------VPFTITDATALTQAGYVGEDAESVLYKLLAAA 220 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l~------------------------~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~ 220 (510)
.+||+||||+|||++|.++|+.+. ..++.++.++..... + ....++++.+..
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~-i---~~~~vr~~~~~~ 101 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID-I---IVEQVRELAEFL 101 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc-c---hHHHHHHHHHHh
Confidence 499999999999999999999985 355566665543211 0 122233333322
Q ss_pred chhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhh
Q 038067 221 DFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLE 266 (510)
Q Consensus 221 ~~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~le 266 (510)
...-.....-|++|||+|.|... .+++|++.+|
T Consensus 102 ~~~~~~~~~kviiidead~mt~~-------------A~nallk~lE 134 (325)
T COG0470 102 SESPLEGGYKVVIIDEADKLTED-------------AANALLKTLE 134 (325)
T ss_pred ccCCCCCCceEEEeCcHHHHhHH-------------HHHHHHHHhc
Confidence 11111245579999999999875 7999999998
No 208
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.92 E-value=5.1e-09 Score=108.28 Aligned_cols=137 Identities=19% Similarity=0.228 Sum_probs=83.3
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCC--eEEEec------c--------ccccccccccch-hhHHHHHHHhhchhH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVP--FTITDA------T--------ALTQAGYVGEDA-ESVLYKLLAAADFDV 224 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p--~~~~~~------s--------~l~~~gy~G~~~-~~~l~~l~~~~~~~~ 224 (510)
.++.+||+||+|+|||++|+.+|+.+..+ .-...| . ++.....-|... -..++++.......-
T Consensus 27 l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~ 106 (329)
T PRK08058 27 LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSG 106 (329)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCC
Confidence 34568999999999999999999987321 000000 0 110000001110 122334333221111
Q ss_pred HHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCcc
Q 038067 225 EAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFV 304 (510)
Q Consensus 225 ~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~ 304 (510)
..+...|++|||+|++... .+++||+.||. ...+++||++++.
T Consensus 107 ~~~~~kvviI~~a~~~~~~-------------a~NaLLK~LEE-----------------------Pp~~~~~Il~t~~- 149 (329)
T PRK08058 107 VESNKKVYIIEHADKMTAS-------------AANSLLKFLEE-----------------------PSGGTTAILLTEN- 149 (329)
T ss_pred cccCceEEEeehHhhhCHH-------------HHHHHHHHhcC-----------------------CCCCceEEEEeCC-
Confidence 2245579999999999865 69999999983 1234556665441
Q ss_pred chHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHh
Q 038067 305 GLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLM 384 (510)
Q Consensus 305 ~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~ 384 (510)
...+.|.+++|+-.+ .|.+++.+++.+++.
T Consensus 150 -------------------------------------------------~~~ll~TIrSRc~~i-~~~~~~~~~~~~~L~ 179 (329)
T PRK08058 150 -------------------------------------------------KHQILPTILSRCQVV-EFRPLPPESLIQRLQ 179 (329)
T ss_pred -------------------------------------------------hHhCcHHHHhhceee-eCCCCCHHHHHHHHH
Confidence 013677888998665 999999999888875
Q ss_pred c
Q 038067 385 E 385 (510)
Q Consensus 385 ~ 385 (510)
.
T Consensus 180 ~ 180 (329)
T PRK08058 180 E 180 (329)
T ss_pred H
Confidence 4
No 209
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.91 E-value=9e-10 Score=113.93 Aligned_cols=117 Identities=21% Similarity=0.275 Sum_probs=66.4
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
..-|+||+|.||||||.|.+.+++.. ..-++++....+..|....-.......-..-..+.+..+.+||++|||+|++.
T Consensus 56 ~~ihiLlvGdpg~gKS~ll~~~~~~~-pr~v~~~g~~~s~~gLta~~~~d~~~~~~~leaGalvlad~GiccIDe~dk~~ 134 (331)
T PF00493_consen 56 GNIHILLVGDPGTGKSQLLKYVAKLA-PRSVYTSGKGSSAAGLTASVSRDPVTGEWVLEAGALVLADGGICCIDEFDKMK 134 (331)
T ss_dssp -S--EEEECSCHHCHHHHHHCCCCT--SSEEEEECCGSTCCCCCEEECCCGGTSSECEEE-HHHHCTTSEEEECTTTT--
T ss_pred cccceeeccchhhhHHHHHHHHHhhC-CceEEECCCCcccCCccceeccccccceeEEeCCchhcccCceeeeccccccc
Confidence 55799999999999999999887665 33456666655444432211000000000001223455688999999999987
Q ss_pred hhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCC
Q 038067 242 KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGA 302 (510)
Q Consensus 242 ~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~ 302 (510)
.. ....|+++||.+.+.|. ..| ...-.-+++-++++.|
T Consensus 135 ~~-------------~~~~l~eaMEqq~isi~--kag--------i~~~l~ar~svlaa~N 172 (331)
T PF00493_consen 135 ED-------------DRDALHEAMEQQTISIA--KAG--------IVTTLNARCSVLAAAN 172 (331)
T ss_dssp CH-------------HHHHHHHHHHCSCEEEC--TSS--------SEEEEE---EEEEEE-
T ss_pred ch-------------HHHHHHHHHHcCeeccc--hhh--------hcccccchhhhHHHHh
Confidence 65 59999999998777775 333 1222334555666666
No 210
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.91 E-value=2.4e-08 Score=102.46 Aligned_cols=130 Identities=16% Similarity=0.231 Sum_probs=83.2
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCC--------CeEEEeccccccccccccch-hhHHHHHHHhhchhHHHhcCcEE
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNV--------PFTITDATALTQAGYVGEDA-ESVLYKLLAAADFDVEAAQRGIV 232 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~--------p~~~~~~s~l~~~gy~G~~~-~~~l~~l~~~~~~~~~~~~~~Vl 232 (510)
-++.+||+||.|+|||++|+.+|+.+.. .+..+... -|... -..++++.......-..+..-|+
T Consensus 25 ~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~-------~~~~i~v~~ir~~~~~~~~~p~~~~~kv~ 97 (313)
T PRK05564 25 FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI-------NKKSIGVDDIRNIIEEVNKKPYEGDKKVI 97 (313)
T ss_pred CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc-------cCCCCCHHHHHHHHHHHhcCcccCCceEE
Confidence 3456899999999999999999998721 11122110 11110 12344444422111123456799
Q ss_pred EEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHh
Q 038067 233 YIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISE 312 (510)
Q Consensus 233 ~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~ 312 (510)
+||++|++..+ .+++||+.||+ ...+++||++++..
T Consensus 98 iI~~ad~m~~~-------------a~naLLK~LEe-----------------------pp~~t~~il~~~~~-------- 133 (313)
T PRK05564 98 IIYNSEKMTEQ-------------AQNAFLKTIEE-----------------------PPKGVFIILLCENL-------- 133 (313)
T ss_pred EEechhhcCHH-------------HHHHHHHHhcC-----------------------CCCCeEEEEEeCCh--------
Confidence 99999999765 69999999983 12344555543310
Q ss_pred hcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhc
Q 038067 313 RRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLME 385 (510)
Q Consensus 313 ~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~ 385 (510)
..+.|.+.+|+. ++.|.+++.+++...+.+
T Consensus 134 ------------------------------------------~~ll~TI~SRc~-~~~~~~~~~~~~~~~l~~ 163 (313)
T PRK05564 134 ------------------------------------------EQILDTIKSRCQ-IYKLNRLSKEEIEKFISY 163 (313)
T ss_pred ------------------------------------------HhCcHHHHhhce-eeeCCCcCHHHHHHHHHH
Confidence 126678889996 569999999998887754
No 211
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=2.1e-08 Score=108.91 Aligned_cols=194 Identities=25% Similarity=0.308 Sum_probs=122.5
Q ss_pred ccCceEEEEccCCChHHHHHHHHHHHhCC----CeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcc
Q 038067 161 LEKSNVLLMGPTGSGKTLLAKTLARIVNV----PFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDE 236 (510)
Q Consensus 161 ~~~~~vLL~GPpGtGKT~lAr~lA~~l~~----p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDE 236 (510)
+...++||.||+|+|||.|++++++++.. .+..++|+.+.... -+...+.+...|..+ ....++||+||+
T Consensus 429 ~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~--~e~iQk~l~~vfse~----~~~~PSiIvLDd 502 (952)
T KOG0735|consen 429 FRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSS--LEKIQKFLNNVFSEA----LWYAPSIIVLDD 502 (952)
T ss_pred cccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchh--HHHHHHHHHHHHHHH----HhhCCcEEEEcc
Confidence 46789999999999999999999999953 56688999886432 111223334444433 456889999999
Q ss_pred hhhhhhhccCCCCCCCch-hhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcc
Q 038067 237 VDKIVKAESRNNGRDVSG-EGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQ 315 (510)
Q Consensus 237 idkl~~~~~~~~~~~~~~-~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~ 315 (510)
+|.+....+.+.+.+... +.....|.+++.. .+ -+-+.+.||+|+.. +.
T Consensus 503 ld~l~~~s~~e~~q~~~~~~rla~flnqvi~~---------y~-----------~~~~~ia~Iat~qe--~q-------- 552 (952)
T KOG0735|consen 503 LDCLASASSNENGQDGVVSERLAAFLNQVIKI---------YL-----------KRNRKIAVIATGQE--LQ-------- 552 (952)
T ss_pred hhhhhccCcccCCcchHHHHHHHHHHHHHHHH---------HH-----------ccCcEEEEEEechh--hh--------
Confidence 999987433333333222 2233333355541 11 01122567777661 00
Q ss_pred cCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHH
Q 038067 316 DSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYK 395 (510)
Q Consensus 316 ~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~ 395 (510)
.+.| -| +.| .+|+.++.++++...+..+|++..+...
T Consensus 553 ------------------------------tl~~-~L----~s~---~~Fq~~~~L~ap~~~~R~~IL~~~~s~~----- 589 (952)
T KOG0735|consen 553 ------------------------------TLNP-LL----VSP---LLFQIVIALPAPAVTRRKEILTTIFSKN----- 589 (952)
T ss_pred ------------------------------hcCh-hh----cCc---cceEEEEecCCcchhHHHHHHHHHHHhh-----
Confidence 0000 01 222 2789999999999999999998633111
Q ss_pred HHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHHhc
Q 038067 396 KMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFE 443 (510)
Q Consensus 396 ~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~~ 443 (510)
....+.+.++.++.. ..++-++.|.-.+++++-.++.+
T Consensus 590 --------~~~~~~~dLd~ls~~--TEGy~~~DL~ifVeRai~~a~le 627 (952)
T KOG0735|consen 590 --------LSDITMDDLDFLSVK--TEGYLATDLVIFVERAIHEAFLE 627 (952)
T ss_pred --------hhhhhhHHHHHHHHh--cCCccchhHHHHHHHHHHHHHHH
Confidence 122345666667664 45677999999999999888743
No 212
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.88 E-value=1.6e-08 Score=108.78 Aligned_cols=213 Identities=23% Similarity=0.304 Sum_probs=124.6
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccc---cchhhHHHHHHHhhchhHHHhcCcEEEEcchh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVG---EDAESVLYKLLAAADFDVEAAQRGIVYIDEVD 238 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G---~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEid 238 (510)
.--|++++|.||+||+-+.++.+..+-+. ++++...-+.+|... .+.+.- .-.++. +.+..+.+||-.|||+|
T Consensus 377 GDinv~iVGDPgt~KSQfLk~v~~fsPR~-vYtsGkaSSaAGLTaaVvkD~esg-df~iEA--GALmLADnGICCIDEFD 452 (764)
T KOG0480|consen 377 GDINVCIVGDPGTGKSQFLKAVCAFSPRS-VYTSGKASSAAGLTAAVVKDEESG-DFTIEA--GALMLADNGICCIDEFD 452 (764)
T ss_pred CCceEEEeCCCCccHHHHHHHHhccCCcc-eEecCcccccccceEEEEecCCCC-ceeeec--CcEEEccCceEEechhc
Confidence 44699999999999999999999888332 344433333333311 110000 001111 22344678999999999
Q ss_pred hhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcC--CceeecCCCccchHHHHHhhccc
Q 038067 239 KIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTK--DILFICGGAFVGLEKTISERRQD 316 (510)
Q Consensus 239 kl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~ts--nilfI~tg~~~~l~~~i~~~~~~ 316 (510)
||... =|.+|+.+||...+.|. ..| ++.|= +.-+|+++|..+- +
T Consensus 453 KMd~~-------------dqvAihEAMEQQtISIa--KAG----------v~aTLnARtSIlAAANPv~G------h--- 498 (764)
T KOG0480|consen 453 KMDVK-------------DQVAIHEAMEQQTISIA--KAG----------VVATLNARTSILAAANPVGG------H--- 498 (764)
T ss_pred ccChH-------------hHHHHHHHHHhheehhe--ecc----------eEEeecchhhhhhhcCCcCC------c---
Confidence 98754 28999999997776665 333 22332 2345566664320 0
Q ss_pred CCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCce-EecCCCCHHHHHHHHhchh--------
Q 038067 317 SSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPIL-VSLSALNEDQLVQVLMEPK-------- 387 (510)
Q Consensus 317 ~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~i-v~f~~Ls~eel~~Il~~~~-------- 387 (510)
|.. ...+.+++ .+.+++++|||.+ |.++.+++..=..|.++-+
T Consensus 499 ----YdR----------------~ktl~eNi--------~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~ 550 (764)
T KOG0480|consen 499 ----YDR----------------KKTLRENI--------NMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGIDD 550 (764)
T ss_pred ----ccc----------------ccchhhhc--------CCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhccccc
Confidence 110 11122222 3889999999986 5666777654444443321
Q ss_pred ---------HHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhC--------------CCCCChhHHHHHHHHHHHHHHhcC
Q 038067 388 ---------NALGRQYKKMFSMNNVKLHFTDDALRLIAKKAM--------------AKNTGARGLRALLENILTEAMFEI 444 (510)
Q Consensus 388 ---------~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~--------------~~~~gaR~L~~~ie~~l~~~l~~~ 444 (510)
...++.|.... ..+...++.++-+.|.+. | ++...+|.|.++|+ |.+|++.+
T Consensus 551 ~~~~~~~~~~e~vrkYi~yA--R~~~P~ls~ea~~~lve~-Y~~lR~~~~~~~~~~s~~ITvRqLESlIR--LsEA~Ar~ 625 (764)
T KOG0480|consen 551 ATERVCVYTLEQVRKYIRYA--RNFKPKLSKEASEMLVEK-YKGLRQRDAQGNNRSSYRITVRQLESLIR--LSEARARV 625 (764)
T ss_pred cccccccccHHHHHHHHHHH--HhcCccccHHHHHHHHHH-HHHHHHhhccccCcccccccHHHHHHHHH--HHHHHHhh
Confidence 12233344322 266677888888887764 2 23455799999887 55566554
Q ss_pred c
Q 038067 445 P 445 (510)
Q Consensus 445 ~ 445 (510)
.
T Consensus 626 ~ 626 (764)
T KOG0480|consen 626 E 626 (764)
T ss_pred h
Confidence 3
No 213
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.82 E-value=2.4e-08 Score=103.12 Aligned_cols=137 Identities=20% Similarity=0.225 Sum_probs=86.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCC--CeEEEecc--------------ccc--cccccccc-hhhHHHHHHHhhch
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNV--PFTITDAT--------------ALT--QAGYVGED-AESVLYKLLAAADF 222 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~--p~~~~~~s--------------~l~--~~gy~G~~-~~~~l~~l~~~~~~ 222 (510)
.++.+||+||+|+|||++|+.+|+.+.. |--.-.|. ++. .+...+.. .-..++++......
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~ 100 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQ 100 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhh
Confidence 4567999999999999999999999832 11000000 110 00000000 01234444433322
Q ss_pred hHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCC
Q 038067 223 DVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGA 302 (510)
Q Consensus 223 ~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~ 302 (510)
.-..+..-|++|||+|+|..+ .+++||+.||+ ...+++||++++
T Consensus 101 ~~~~~~~kv~iI~~a~~m~~~-------------aaNaLLK~LEE-----------------------Pp~~~~fiL~t~ 144 (328)
T PRK05707 101 TAQLGGRKVVLIEPAEAMNRN-------------AANALLKSLEE-----------------------PSGDTVLLLISH 144 (328)
T ss_pred ccccCCCeEEEECChhhCCHH-------------HHHHHHHHHhC-----------------------CCCCeEEEEEEC
Confidence 112345679999999999875 69999999983 123566666655
Q ss_pred ccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHH
Q 038067 303 FVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQV 382 (510)
Q Consensus 303 ~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~I 382 (510)
.. ..+.|.+++|+.. +.|.+++.++..+.
T Consensus 145 ~~--------------------------------------------------~~ll~TI~SRc~~-~~~~~~~~~~~~~~ 173 (328)
T PRK05707 145 QP--------------------------------------------------SRLLPTIKSRCQQ-QACPLPSNEESLQW 173 (328)
T ss_pred Ch--------------------------------------------------hhCcHHHHhhcee-eeCCCcCHHHHHHH
Confidence 11 1267889999987 59999999998887
Q ss_pred Hhc
Q 038067 383 LME 385 (510)
Q Consensus 383 l~~ 385 (510)
+.+
T Consensus 174 L~~ 176 (328)
T PRK05707 174 LQQ 176 (328)
T ss_pred HHH
Confidence 764
No 214
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.81 E-value=1.6e-08 Score=94.08 Aligned_cols=88 Identities=28% Similarity=0.428 Sum_probs=54.1
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCC-----------------------CeEEEeccccccccccccchhhHHHHHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNV-----------------------PFTITDATALTQAGYVGEDAESVLYKLLA 218 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~-----------------------p~~~~~~s~l~~~gy~G~~~~~~l~~l~~ 218 (510)
-+..+||+||+|+||+++|+.+|+.+.. .+..++...... .. . -..++.+..
T Consensus 18 l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~--~i--~-i~~ir~i~~ 92 (162)
T PF13177_consen 18 LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK--SI--K-IDQIREIIE 92 (162)
T ss_dssp --SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS--SB--S-HHHHHHHHH
T ss_pred cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc--hh--h-HHHHHHHHH
Confidence 3456999999999999999999998821 111111111000 00 1 133444444
Q ss_pred hhchhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhC
Q 038067 219 AADFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEG 267 (510)
Q Consensus 219 ~~~~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg 267 (510)
.....-..+..-|++|||+|+|... .+++||+.||.
T Consensus 93 ~~~~~~~~~~~KviiI~~ad~l~~~-------------a~NaLLK~LEe 128 (162)
T PF13177_consen 93 FLSLSPSEGKYKVIIIDEADKLTEE-------------AQNALLKTLEE 128 (162)
T ss_dssp HCTSS-TTSSSEEEEEETGGGS-HH-------------HHHHHHHHHHS
T ss_pred HHHHHHhcCCceEEEeehHhhhhHH-------------HHHHHHHHhcC
Confidence 3322222345679999999999876 79999999994
No 215
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.80 E-value=7.1e-08 Score=102.31 Aligned_cols=123 Identities=20% Similarity=0.303 Sum_probs=70.2
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCC--CeEEEecccccc------------ccccccch-hhHHHHHHHhhchhHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNV--PFTITDATALTQ------------AGYVGEDA-ESVLYKLLAAADFDVEA 226 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~--p~~~~~~s~l~~------------~gy~G~~~-~~~l~~l~~~~~~~~~~ 226 (510)
.+.+++|+||||||||++|+.+|..+.. .+..+++..+.+ ++++|... .+.+..+...+.. ..
T Consensus 193 ~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~--~p 270 (459)
T PRK11331 193 IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKE--QP 270 (459)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHh--cc
Confidence 4679999999999999999999998842 223333322221 11222221 1234344433311 11
Q ss_pred hcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCc----eeeeccCCCCCCCCCCCCcEEEEcCCceeecCCC
Q 038067 227 AQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGT----VVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGA 302 (510)
Q Consensus 227 ~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~----~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~ 302 (510)
..+.||+||||++...++ +...|+.+||.. ...+|+.-.. ..... .....|+.||+|.|
T Consensus 271 ~~~~vliIDEINRani~k------------iFGel~~lLE~~~rg~~~~v~l~y~e----~d~e~-f~iP~Nl~IIgTMN 333 (459)
T PRK11331 271 EKKYVFIIDEINRANLSK------------VFGEVMMLMEHDKRGENWSVPLTYSE----NDEER-FYVPENVYIIGLMN 333 (459)
T ss_pred cCCcEEEEehhhccCHHH------------hhhhhhhhccccccccccceeeeccc----ccccc-ccCCCCeEEEEecC
Confidence 356899999999976542 788889999832 1122211000 00111 23457888888887
Q ss_pred c
Q 038067 303 F 303 (510)
Q Consensus 303 ~ 303 (510)
.
T Consensus 334 t 334 (459)
T PRK11331 334 T 334 (459)
T ss_pred c
Confidence 3
No 216
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.78 E-value=7e-08 Score=101.31 Aligned_cols=177 Identities=16% Similarity=0.286 Sum_probs=111.0
Q ss_pred CceEEEEccCCChHHHHHHHHHHHh-----CCCeEEEeccccccccccccchhhHHHHHHHhhchhHH-HhcCcEEEEcc
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIV-----NVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVE-AAQRGIVYIDE 236 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l-----~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~-~~~~~Vl~iDE 236 (510)
-..++|+||+|+|||+|+.+++... +..+++++...+... + +..+.......++ ...--+++||+
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~-~--------v~a~~~~~~~~Fk~~y~~dlllIDD 183 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTND-F--------VKALRDNEMEKFKEKYSLDLLLIDD 183 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHH-H--------HHHHHhhhHHHHHHhhccCeeeech
Confidence 3579999999999999999999887 234666666655421 1 1111110000011 12335899999
Q ss_pred hhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhccc
Q 038067 237 VDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQD 316 (510)
Q Consensus 237 idkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~ 316 (510)
|+.+.... ..|..|...+.. +.+..+ .+|+|+..
T Consensus 184 iq~l~gk~-----------~~qeefFh~FN~---------------------l~~~~k-qIvltsdr------------- 217 (408)
T COG0593 184 IQFLAGKE-----------RTQEEFFHTFNA---------------------LLENGK-QIVLTSDR------------- 217 (408)
T ss_pred HhHhcCCh-----------hHHHHHHHHHHH---------------------HHhcCC-EEEEEcCC-------------
Confidence 99987542 246666555541 000111 22223220
Q ss_pred CCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCc--eEecCCCCHHHHHHHHhchhHHHHHHH
Q 038067 317 SSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPI--LVSLSALNEDQLVQVLMEPKNALGRQY 394 (510)
Q Consensus 317 ~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~--iv~f~~Ls~eel~~Il~~~~~~l~~~~ 394 (510)
.|.++ .++.|.|.+||.. ++.+.|++.+.+..|+.+.
T Consensus 218 -------------------------------~P~~l--~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kk-------- 256 (408)
T COG0593 218 -------------------------------PPKEL--NGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKK-------- 256 (408)
T ss_pred -------------------------------Cchhh--ccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHH--------
Confidence 01111 2366789999964 7899999999999999751
Q ss_pred HHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHHhc
Q 038067 395 KKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFE 443 (510)
Q Consensus 395 ~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~~ 443 (510)
.....+.++++++.+|+... ..+.|.|..+++++...+...
T Consensus 257 -----a~~~~~~i~~ev~~~la~~~---~~nvReLegaL~~l~~~a~~~ 297 (408)
T COG0593 257 -----AEDRGIEIPDEVLEFLAKRL---DRNVRELEGALNRLDAFALFT 297 (408)
T ss_pred -----HHhcCCCCCHHHHHHHHHHh---hccHHHHHHHHHHHHHHHHhc
Confidence 12345778999999999974 445899999999877666653
No 217
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.74 E-value=2.2e-08 Score=108.46 Aligned_cols=98 Identities=24% Similarity=0.428 Sum_probs=62.7
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEecccccccc---ccccchhhHHHHHHHhhchhHHHhcCcEEEEcchh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAG---YVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVD 238 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~g---y~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEid 238 (510)
..-||||+|.||||||.+.+.+++.+..- ++.+...-+..| |+..+.+. ..++-+ .+.+..+.+||-.|||+|
T Consensus 461 ~~INILL~GDPGtsKSqlLqyv~~l~pRg-~yTSGkGsSavGLTayVtrd~dt--kqlVLe-sGALVLSD~GiCCIDEFD 536 (804)
T KOG0478|consen 461 GDINILLVGDPGTSKSQLLQYCHRLLPRG-VYTSGKGSSAVGLTAYVTKDPDT--RQLVLE-SGALVLSDNGICCIDEFD 536 (804)
T ss_pred ccceEEEecCCCcCHHHHHHHHHHhCCcc-eeecCCccchhcceeeEEecCcc--ceeeee-cCcEEEcCCceEEchhhh
Confidence 44699999999999999999999998332 122222111111 33222111 011111 112234578999999999
Q ss_pred hhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCC
Q 038067 239 KIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNG 278 (510)
Q Consensus 239 kl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g 278 (510)
||..+ .++.|+++||...+.|+ ..|
T Consensus 537 KM~dS-------------trSvLhEvMEQQTvSIA--KAG 561 (804)
T KOG0478|consen 537 KMSDS-------------TRSVLHEVMEQQTLSIA--KAG 561 (804)
T ss_pred hhhHH-------------HHHHHHHHHHHhhhhHh--hcc
Confidence 99766 58999999998777776 455
No 218
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.69 E-value=1.8e-07 Score=108.21 Aligned_cols=149 Identities=27% Similarity=0.351 Sum_probs=108.3
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccc-cccc----cch------hhHHHHHHHhhchhHHHhcCc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQA-GYVG----EDA------ESVLYKLLAAADFDVEAAQRG 230 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~-gy~G----~~~------~~~l~~l~~~~~~~~~~~~~~ 230 (510)
..-++|+-||+.+|||++.+.+|+..|..|++++..+-++. .|+| .+. ++.+.+++ ..+-
T Consensus 887 ~~fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAl---------R~Gy 957 (4600)
T COG5271 887 SNFPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEAL---------RRGY 957 (4600)
T ss_pred cCCcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHH---------hcCc
Confidence 45679999999999999999999999999999998876642 2333 221 22333333 3456
Q ss_pred EEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhh-CceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHH
Q 038067 231 IVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLE-GTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKT 309 (510)
Q Consensus 231 Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~le-g~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~ 309 (510)
.|+|||..-++.. |+.+|-++|| ++...|| +.....++..++.+..|.|...+-+|
T Consensus 958 WIVLDELNLApTD-------------VLEaLNRLLDDNRelfIP--ETqevV~PHp~F~lFATQNppg~YgG-------- 1014 (4600)
T COG5271 958 WIVLDELNLAPTD-------------VLEALNRLLDDNRELFIP--ETQEVVVPHPNFRLFATQNPPGGYGG-------- 1014 (4600)
T ss_pred EEEeeccccCcHH-------------HHHHHHHhhccccceecC--CcceeeccCCCeeEEeecCCCccccc--------
Confidence 8999999975443 9999999998 6777776 66555555555555555554333222
Q ss_pred HHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchh
Q 038067 310 ISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPK 387 (510)
Q Consensus 310 i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~ 387 (510)
++++..+|++||-.+ +|....++++..|+...+
T Consensus 1015 --------------------------------------------RK~LSrAFRNRFlE~-hFddipedEle~ILh~rc 1047 (4600)
T COG5271 1015 --------------------------------------------RKGLSRAFRNRFLEM-HFDDIPEDELEEILHGRC 1047 (4600)
T ss_pred --------------------------------------------hHHHHHHHHhhhHhh-hcccCcHHHHHHHHhccC
Confidence 245777999999776 999999999999997643
No 219
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.67 E-value=2.1e-07 Score=95.69 Aligned_cols=137 Identities=18% Similarity=0.290 Sum_probs=86.2
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCC--CeEEEeccc------cc---ccc--cc----ccc-hhhHHHHHHHhhchh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNV--PFTITDATA------LT---QAG--YV----GED-AESVLYKLLAAADFD 223 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~--p~~~~~~s~------l~---~~g--y~----G~~-~~~~l~~l~~~~~~~ 223 (510)
-++.+||+||+|+||+++|+.+|+.+.. +.-.-.|.. +. -+. ++ |.. .-..++++.+.....
T Consensus 23 l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~ 102 (325)
T PRK06871 23 GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQH 102 (325)
T ss_pred cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhhc
Confidence 4567999999999999999999998821 110001110 00 000 01 110 012344443332211
Q ss_pred HHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCc
Q 038067 224 VEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAF 303 (510)
Q Consensus 224 ~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~ 303 (510)
-..+...|++||++|+|... .+++||+.||+ ...+++||++++.
T Consensus 103 ~~~g~~KV~iI~~a~~m~~~-------------AaNaLLKtLEE-----------------------Pp~~~~fiL~t~~ 146 (325)
T PRK06871 103 AQQGGNKVVYIQGAERLTEA-------------AANALLKTLEE-----------------------PRPNTYFLLQADL 146 (325)
T ss_pred cccCCceEEEEechhhhCHH-------------HHHHHHHHhcC-----------------------CCCCeEEEEEECC
Confidence 12345579999999999865 69999999984 2345677776541
Q ss_pred cchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHH
Q 038067 304 VGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVL 383 (510)
Q Consensus 304 ~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il 383 (510)
. ..+.|.+++|+..+ .|.+++.+++.+.+
T Consensus 147 ~--------------------------------------------------~~llpTI~SRC~~~-~~~~~~~~~~~~~L 175 (325)
T PRK06871 147 S--------------------------------------------------AALLPTIYSRCQTW-LIHPPEEQQALDWL 175 (325)
T ss_pred h--------------------------------------------------HhCchHHHhhceEE-eCCCCCHHHHHHHH
Confidence 0 12677899999765 89999999988777
Q ss_pred hc
Q 038067 384 ME 385 (510)
Q Consensus 384 ~~ 385 (510)
..
T Consensus 176 ~~ 177 (325)
T PRK06871 176 QA 177 (325)
T ss_pred HH
Confidence 64
No 220
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.65 E-value=3.7e-07 Score=94.55 Aligned_cols=137 Identities=16% Similarity=0.184 Sum_probs=86.1
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCC--CeEEEeccc------cc---ccc--ccc-cc-----hhhHHHHHHHhhch
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNV--PFTITDATA------LT---QAG--YVG-ED-----AESVLYKLLAAADF 222 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~--p~~~~~~s~------l~---~~g--y~G-~~-----~~~~l~~l~~~~~~ 222 (510)
.++.+||+||+|+||+++|.++|+.+.. |--...|.. +. -+. ++. +. .-..++.+.+....
T Consensus 23 l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~ 102 (334)
T PRK07993 23 GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLYE 102 (334)
T ss_pred cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHhh
Confidence 4568999999999999999999998821 110001110 00 000 010 00 01233444333221
Q ss_pred hHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCC
Q 038067 223 DVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGA 302 (510)
Q Consensus 223 ~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~ 302 (510)
.-..+...|++||++|+|..+ ..|+||+.||+ ...+++||+++.
T Consensus 103 ~~~~g~~kV~iI~~ae~m~~~-------------AaNaLLKtLEE-----------------------Pp~~t~fiL~t~ 146 (334)
T PRK07993 103 HARLGGAKVVWLPDAALLTDA-------------AANALLKTLEE-----------------------PPENTWFFLACR 146 (334)
T ss_pred ccccCCceEEEEcchHhhCHH-------------HHHHHHHHhcC-----------------------CCCCeEEEEEEC
Confidence 112345679999999999866 69999999994 224566777654
Q ss_pred ccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHH
Q 038067 303 FVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQV 382 (510)
Q Consensus 303 ~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~I 382 (510)
.. ..+.|-+++|+.. +.|.+++.+++.+.
T Consensus 147 ~~--------------------------------------------------~~lLpTIrSRCq~-~~~~~~~~~~~~~~ 175 (334)
T PRK07993 147 EP--------------------------------------------------ARLLATLRSRCRL-HYLAPPPEQYALTW 175 (334)
T ss_pred Ch--------------------------------------------------hhChHHHHhcccc-ccCCCCCHHHHHHH
Confidence 11 1267889999986 49999999988877
Q ss_pred Hhc
Q 038067 383 LME 385 (510)
Q Consensus 383 l~~ 385 (510)
+.+
T Consensus 176 L~~ 178 (334)
T PRK07993 176 LSR 178 (334)
T ss_pred HHH
Confidence 753
No 221
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.64 E-value=3.3e-07 Score=101.76 Aligned_cols=71 Identities=14% Similarity=0.177 Sum_probs=46.0
Q ss_pred Cchhhhc--ccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHhcCCceeee-CHHHHHHHHHhhCCCCCChhHHHHHH
Q 038067 357 LIPEFIG--RFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFSMNNVKLHF-TDDALRLIAKKAMAKNTGARGLRALL 433 (510)
Q Consensus 357 ~~Pefl~--R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~~~~~~l~i-s~~al~~La~~~~~~~~gaR~L~~~i 433 (510)
+.|++++ |+. +|.|+|++...+.+.|.. ++.+-.. .......+ +++++..|+..+ .+.+|..-+.+
T Consensus 256 L~~eLls~~rv~-~I~FnPia~t~l~K~L~r----Il~~E~~---~~~~~~~~p~~~~l~~I~~~s---~GDiRsAIn~L 324 (637)
T TIGR00602 256 MNKEILEEPRVS-NISFNPIAPTIMKKFLNR----IVTIEAK---KNGEKIKVPKKTSVELLCQGC---SGDIRSAINSL 324 (637)
T ss_pred cCHhHhccccee-EEEeCCCCHHHHHHHHHH----HHHhhhh---ccccccccCCHHHHHHHHHhC---CChHHHHHHHH
Confidence 4578887 443 579999999998777764 2221111 01122223 678999998864 66788888888
Q ss_pred HHHHH
Q 038067 434 ENILT 438 (510)
Q Consensus 434 e~~l~ 438 (510)
|-.+.
T Consensus 325 Qf~~~ 329 (637)
T TIGR00602 325 QFSSS 329 (637)
T ss_pred HHHHh
Confidence 86554
No 222
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.61 E-value=3e-07 Score=90.63 Aligned_cols=165 Identities=22% Similarity=0.321 Sum_probs=106.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHHh-C--CCeEEEeccccccc--------------------cccccchhhHHHHHHHhh
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIV-N--VPFTITDATALTQA--------------------GYVGEDAESVLYKLLAAA 220 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l-~--~p~~~~~~s~l~~~--------------------gy~G~~~~~~l~~l~~~~ 220 (510)
.|+++|||+|+||-|.+.++-+.+ | ++-..++..++..+ .-.|....-.+.++++..
T Consensus 35 PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKev 114 (351)
T KOG2035|consen 35 PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEV 114 (351)
T ss_pred CeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHH
Confidence 699999999999999999988777 3 33344443333211 112322233455555432
Q ss_pred ----chhH-HHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCc
Q 038067 221 ----DFDV-EAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDI 295 (510)
Q Consensus 221 ----~~~~-~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsni 295 (510)
+.+. .+....|++|.|+|++... .|.+|.+-||- ..+|+
T Consensus 115 AQt~qie~~~qr~fKvvvi~ead~LT~d-------------AQ~aLRRTMEk-----------------------Ys~~~ 158 (351)
T KOG2035|consen 115 AQTQQIETQGQRPFKVVVINEADELTRD-------------AQHALRRTMEK-----------------------YSSNC 158 (351)
T ss_pred HhhcchhhccccceEEEEEechHhhhHH-------------HHHHHHHHHHH-----------------------HhcCc
Confidence 1111 1234469999999999865 79999999982 23444
Q ss_pred eeecCCCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCC
Q 038067 296 LFICGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALN 375 (510)
Q Consensus 296 lfI~tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls 375 (510)
-+|+..|.- ..++|++.+|+-. |..+.++
T Consensus 159 RlIl~cns~--------------------------------------------------SriIepIrSRCl~-iRvpaps 187 (351)
T KOG2035|consen 159 RLILVCNST--------------------------------------------------SRIIEPIRSRCLF-IRVPAPS 187 (351)
T ss_pred eEEEEecCc--------------------------------------------------ccchhHHhhheeE-EeCCCCC
Confidence 444443300 1277899999854 5899999
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHH
Q 038067 376 EDQLVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLE 434 (510)
Q Consensus 376 ~eel~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie 434 (510)
++|+..++.. +. . +..+.+.++.+..|++.+ .|.||+.+=
T Consensus 188 ~eeI~~vl~~----v~-------~--kE~l~lp~~~l~rIa~kS------~~nLRrAll 227 (351)
T KOG2035|consen 188 DEEITSVLSK----VL-------K--KEGLQLPKELLKRIAEKS------NRNLRRALL 227 (351)
T ss_pred HHHHHHHHHH----HH-------H--HhcccCcHHHHHHHHHHh------cccHHHHHH
Confidence 9999999874 21 2 234556799999999986 456666653
No 223
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.60 E-value=3.1e-07 Score=95.20 Aligned_cols=137 Identities=19% Similarity=0.200 Sum_probs=86.4
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCe--E-EEecc--------------ccc--cccc------------------
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPF--T-ITDAT--------------ALT--QAGY------------------ 204 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~--~-~~~~s--------------~l~--~~gy------------------ 204 (510)
-++.+||+||+|+||+++|+.+|+.+...- . ...|. ++. .+..
T Consensus 20 l~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~~ 99 (342)
T PRK06964 20 LPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADAD 99 (342)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchhh
Confidence 557899999999999999999999883211 0 00010 000 0000
Q ss_pred -ccc-------c-hhhHHHHHHHhhchhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccC
Q 038067 205 -VGE-------D-AESVLYKLLAAADFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIP 275 (510)
Q Consensus 205 -~G~-------~-~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~ 275 (510)
-|. . .-..++.+.+.....-..+..-|++||++|+|..+ ..++||+.||+
T Consensus 100 ~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~-------------AaNaLLKtLEE-------- 158 (342)
T PRK06964 100 EGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVA-------------AANALLKTLEE-------- 158 (342)
T ss_pred cccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCHH-------------HHHHHHHHhcC--------
Confidence 000 0 01223444333222112345569999999999866 69999999984
Q ss_pred CCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhc
Q 038067 276 DNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAY 355 (510)
Q Consensus 276 ~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~ 355 (510)
...+++||++++.. .
T Consensus 159 ---------------Pp~~t~fiL~t~~~--------------------------------------------------~ 173 (342)
T PRK06964 159 ---------------PPPGTVFLLVSARI--------------------------------------------------D 173 (342)
T ss_pred ---------------CCcCcEEEEEECCh--------------------------------------------------h
Confidence 22456677765511 1
Q ss_pred CCchhhhcccCceEecCCCCHHHHHHHHhc
Q 038067 356 GLIPEFIGRFPILVSLSALNEDQLVQVLME 385 (510)
Q Consensus 356 ~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~ 385 (510)
.+.|.+++|+- .+.|.+++.+++.+.+..
T Consensus 174 ~LLpTI~SRcq-~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 174 RLLPTILSRCR-QFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred hCcHHHHhcCE-EEEecCCCHHHHHHHHHH
Confidence 37788999995 569999999999888864
No 224
>PF13173 AAA_14: AAA domain
Probab=98.60 E-value=1.9e-07 Score=83.06 Aligned_cols=70 Identities=23% Similarity=0.332 Sum_probs=46.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhC--CCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVN--VPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~--~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
..++++||.|||||++++.+++.+- ..++.+++.+....... . .. +...+.+. ......+||||||+.++
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~--~-~~-~~~~~~~~----~~~~~~~i~iDEiq~~~ 74 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLA--D-PD-LLEYFLEL----IKPGKKYIFIDEIQYLP 74 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHh--h-hh-hHHHHHHh----hccCCcEEEEehhhhhc
Confidence 4699999999999999999998875 67888888776532110 0 00 11222111 01256799999999974
No 225
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=8.7e-07 Score=93.92 Aligned_cols=97 Identities=29% Similarity=0.378 Sum_probs=65.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
+-.++||.||||+|||.||-.+|...+.||+.+-..+-. .|+.....-..+...|.++ -+.+-+||++|+|+++.
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~m-iG~sEsaKc~~i~k~F~DA----YkS~lsiivvDdiErLi 611 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDM-IGLSESAKCAHIKKIFEDA----YKSPLSIIVVDDIERLL 611 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHc-cCccHHHHHHHHHHHHHHh----hcCcceEEEEcchhhhh
Confidence 556899999999999999999999999999976544322 2332222223344555544 45667899999999998
Q ss_pred hhccCCCCCCCchhhHHHHHHHHhh
Q 038067 242 KAESRNNGRDVSGEGVQQALLKMLE 266 (510)
Q Consensus 242 ~~~~~~~~~~~~~~~v~~~LL~~le 266 (510)
.-.+ ++..+| +-++++|+-+|.
T Consensus 612 D~vp--IGPRfS-N~vlQaL~VllK 633 (744)
T KOG0741|consen 612 DYVP--IGPRFS-NLVLQALLVLLK 633 (744)
T ss_pred cccc--cCchhh-HHHHHHHHHHhc
Confidence 6542 222222 237777777774
No 226
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.58 E-value=5.6e-07 Score=92.43 Aligned_cols=137 Identities=21% Similarity=0.208 Sum_probs=84.6
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCC--CeE--EEecc---------ccc----cccccccc-----hhhHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNV--PFT--ITDAT---------ALT----QAGYVGED-----AESVLYKLLAA 219 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~--p~~--~~~~s---------~l~----~~gy~G~~-----~~~~l~~l~~~ 219 (510)
-++.+||+||+|+||+++|.++|+.+.. +.- .+.+- ++. .+...|.. .-..++++.+.
T Consensus 25 l~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~ 104 (319)
T PRK08769 25 LGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQK 104 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHH
Confidence 4456999999999999999999998821 100 00000 110 01011110 01123333332
Q ss_pred hchhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeec
Q 038067 220 ADFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFIC 299 (510)
Q Consensus 220 ~~~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~ 299 (510)
....-..+..-|++||++|+|..+ ..|+||+.||+ ...+++||+
T Consensus 105 ~~~~p~~g~~kV~iI~~ae~m~~~-------------AaNaLLKtLEE-----------------------Pp~~~~fiL 148 (319)
T PRK08769 105 LALTPQYGIAQVVIVDPADAINRA-------------ACNALLKTLEE-----------------------PSPGRYLWL 148 (319)
T ss_pred HhhCcccCCcEEEEeccHhhhCHH-------------HHHHHHHHhhC-----------------------CCCCCeEEE
Confidence 211111234569999999999865 69999999984 234566666
Q ss_pred CCCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHH
Q 038067 300 GGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQL 379 (510)
Q Consensus 300 tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel 379 (510)
+++.. ..+.|.+++|+..+ .|.+++.++.
T Consensus 149 ~~~~~--------------------------------------------------~~lLpTIrSRCq~i-~~~~~~~~~~ 177 (319)
T PRK08769 149 ISAQP--------------------------------------------------ARLPATIRSRCQRL-EFKLPPAHEA 177 (319)
T ss_pred EECCh--------------------------------------------------hhCchHHHhhheEe-eCCCcCHHHH
Confidence 65511 12678899999775 8999999988
Q ss_pred HHHHhc
Q 038067 380 VQVLME 385 (510)
Q Consensus 380 ~~Il~~ 385 (510)
.+.+..
T Consensus 178 ~~~L~~ 183 (319)
T PRK08769 178 LAWLLA 183 (319)
T ss_pred HHHHHH
Confidence 887754
No 227
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.58 E-value=2.7e-07 Score=106.87 Aligned_cols=156 Identities=21% Similarity=0.259 Sum_probs=107.5
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccc-cccccch----hhHHHHHHHhhchhHHHhcCcEEEEcc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQA-GYVGEDA----ESVLYKLLAAADFDVEAAQRGIVYIDE 236 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~-gy~G~~~----~~~l~~l~~~~~~~~~~~~~~Vl~iDE 236 (510)
-.+++||.|.||+|||++..+||+..|..+++++.++-++- ..+|.+. ++.+ .+..+++......++.|+|||
T Consensus 1542 v~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef--~w~dapfL~amr~G~WVlLDE 1619 (4600)
T COG5271 1542 VGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEF--RWMDAPFLHAMRDGGWVLLDE 1619 (4600)
T ss_pred cCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCcee--EecccHHHHHhhcCCEEEeeh
Confidence 56789999999999999999999999999999999876532 1233221 1111 234455555567889999999
Q ss_pred hhhhhhhccCCCCCCCchhhHHHHHHHHhh-CceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcc
Q 038067 237 VDKIVKAESRNNGRDVSGEGVQQALLKMLE-GTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQ 315 (510)
Q Consensus 237 idkl~~~~~~~~~~~~~~~~v~~~LL~~le-g~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~ 315 (510)
+.-...+ |+..|-..|| .+...|| +-..... ...|..+.++-|..+
T Consensus 1620 iNLaSQS-------------VlEGLNacLDhR~eayIP--Eld~~f~--------~HpnfrVFAaqNPq~---------- 1666 (4600)
T COG5271 1620 INLASQS-------------VLEGLNACLDHRREAYIP--ELDKTFD--------VHPNFRVFAAQNPQD---------- 1666 (4600)
T ss_pred hhhhHHH-------------HHHHHHHHHhhccccccc--cccceee--------ccCCeeeeeecCchh----------
Confidence 9987655 8999999998 5555555 3322222 223444444433110
Q ss_pred cCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchh
Q 038067 316 DSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPK 387 (510)
Q Consensus 316 ~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~ 387 (510)
-| --+++++-.|++||..+ .+..|+.+++..|+....
T Consensus 1667 ---qg-------------------------------gGRKgLPkSF~nRFsvV-~~d~lt~dDi~~Ia~~~y 1703 (4600)
T COG5271 1667 ---QG-------------------------------GGRKGLPKSFLNRFSVV-KMDGLTTDDITHIANKMY 1703 (4600)
T ss_pred ---cC-------------------------------CCcccCCHHHhhhhheE-EecccccchHHHHHHhhC
Confidence 00 01356888999999875 899999999999997654
No 228
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.57 E-value=1.3e-07 Score=82.50 Aligned_cols=77 Identities=30% Similarity=0.450 Sum_probs=51.0
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhCCC---eEEEeccccccccc------------cccchhhHHHHHHHhhchhHHHh
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVNVP---FTITDATALTQAGY------------VGEDAESVLYKLLAAADFDVEAA 227 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~~p---~~~~~~s~l~~~gy------------~G~~~~~~l~~l~~~~~~~~~~~ 227 (510)
+.+++|+||||||||++++.+|..+..+ ++.+++........ ........+...+..+ ...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 77 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALA----RKL 77 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHH----Hhc
Confidence 3589999999999999999999999664 88888876543211 0111122222222222 222
Q ss_pred cCcEEEEcchhhhhhh
Q 038067 228 QRGIVYIDEVDKIVKA 243 (510)
Q Consensus 228 ~~~Vl~iDEidkl~~~ 243 (510)
...+|+|||++++...
T Consensus 78 ~~~viiiDei~~~~~~ 93 (148)
T smart00382 78 KPDVLILDEITSLLDA 93 (148)
T ss_pred CCCEEEEECCcccCCH
Confidence 3499999999998754
No 229
>PRK08116 hypothetical protein; Validated
Probab=98.50 E-value=2.8e-07 Score=92.67 Aligned_cols=86 Identities=19% Similarity=0.358 Sum_probs=54.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccccc---cccccchhhHHHHHHHhhchhHHHhcCcEEEEcch
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALTQA---GYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEV 237 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~~~---gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEi 237 (510)
.+++|+|++|||||+||.++++.+ +.+++.++..++... .|.... ......+++. .....+|+|||+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~-~~~~~~~~~~------l~~~dlLviDDl 187 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSG-KEDENEIIRS------LVNADLLILDDL 187 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccc-cccHHHHHHH------hcCCCEEEEecc
Confidence 469999999999999999999987 678888887775421 111110 0011111111 123469999999
Q ss_pred hhhhhhccCCCCCCCchhhHHHHHHHHhhC
Q 038067 238 DKIVKAESRNNGRDVSGEGVQQALLKMLEG 267 (510)
Q Consensus 238 dkl~~~~~~~~~~~~~~~~v~~~LL~~leg 267 (510)
+.-... +-.+..|+.+++.
T Consensus 188 g~e~~t-----------~~~~~~l~~iin~ 206 (268)
T PRK08116 188 GAERDT-----------EWAREKVYNIIDS 206 (268)
T ss_pred cCCCCC-----------HHHHHHHHHHHHH
Confidence 652211 1267888898873
No 230
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.50 E-value=9.5e-07 Score=96.55 Aligned_cols=188 Identities=19% Similarity=0.242 Sum_probs=120.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHHh----------CCCeEEEeccccccc---------cccccchhhH--HHHHHHhhch
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIV----------NVPFTITDATALTQA---------GYVGEDAESV--LYKLLAAADF 222 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l----------~~p~~~~~~s~l~~~---------gy~G~~~~~~--l~~l~~~~~~ 222 (510)
+.+.+.|-||||||.++..+-+.| ..+|+.+|+-.++.+ .+.|+...+. +..+-.....
T Consensus 423 ~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~ 502 (767)
T KOG1514|consen 423 SCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTV 502 (767)
T ss_pred eeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhcc
Confidence 479999999999999999988766 247788888877643 1223332211 1111100000
Q ss_pred hHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCC
Q 038067 223 DVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGA 302 (510)
Q Consensus 223 ~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~ 302 (510)
.-.+...+||+|||.|-|... -|+.|+.+++ +| ...-+.+++|+-+|
T Consensus 503 ~k~~~~~~VvLiDElD~Lvtr-------------~QdVlYn~fd-----Wp---------------t~~~sKLvvi~IaN 549 (767)
T KOG1514|consen 503 PKPKRSTTVVLIDELDILVTR-------------SQDVLYNIFD-----WP---------------TLKNSKLVVIAIAN 549 (767)
T ss_pred CCCCCCCEEEEeccHHHHhcc-------------cHHHHHHHhc-----CC---------------cCCCCceEEEEecc
Confidence 012356789999999999864 2888888886 11 11224456666555
Q ss_pred ccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCc-eEecCCCCHHHHHH
Q 038067 303 FVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPI-LVSLSALNEDQLVQ 381 (510)
Q Consensus 303 ~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~-iv~f~~Ls~eel~~ 381 (510)
--+| |+ .-|.+-.-+|++. .+.|.|++.+++.+
T Consensus 550 Tmdl------------------------------------------PE----r~l~nrvsSRlg~tRi~F~pYth~qLq~ 583 (767)
T KOG1514|consen 550 TMDL------------------------------------------PE----RLLMNRVSSRLGLTRICFQPYTHEQLQE 583 (767)
T ss_pred cccC------------------------------------------HH----HHhccchhhhccceeeecCCCCHHHHHH
Confidence 2221 11 1122233456665 48999999999999
Q ss_pred HHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHHhcC
Q 038067 382 VLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEI 444 (510)
Q Consensus 382 Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~~~ 444 (510)
|+...+ .+. -.|..+|++.+++......+.||....++++...-+-.+.
T Consensus 584 Ii~~RL-------------~~~-~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~ 632 (767)
T KOG1514|consen 584 IISARL-------------KGL-DAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERN 632 (767)
T ss_pred HHHHhh-------------cch-hhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhc
Confidence 997532 222 4468899999999877777779998888888775544433
No 231
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.47 E-value=7.2e-07 Score=78.90 Aligned_cols=64 Identities=20% Similarity=0.221 Sum_probs=52.4
Q ss_pred CChHHHHhhhccccccchhhhhccchhhhhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhhcccccccccccCCccCCCCC
Q 038067 73 PTPKEICKGLDEFVIGQERAKKSHIFCILVDMLVYVIGACCAVYNHYKRIYHSSLQKELVSDHLYVDSILGSGVKSGNCN 152 (510)
Q Consensus 73 ~~~~el~~~L~~~ViGQ~~ak~~~~~~~~~~~~~~~~~l~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 152 (510)
.+...|+..|++.++||+-|++. +..+|..|......
T Consensus 14 ~~~~~L~~~L~~~l~GQhla~~~---------------v~~ai~~~l~~~~p---------------------------- 50 (127)
T PF06309_consen 14 YNITGLEKDLQRNLFGQHLAVEV---------------VVNAIKGHLANPNP---------------------------- 50 (127)
T ss_pred CCHHHHHHHHHHHccCcHHHHHH---------------HHHHHHHHHcCCCC----------------------------
Confidence 46778999999999999999999 88888766542100
Q ss_pred CCcchhhhccCceEEEEccCCChHHHHHHHHHHHh
Q 038067 153 VENDEIVELEKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 153 ~~~~~~~~~~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
..|-.+.|+||||||||++++.||+.+
T Consensus 51 --------~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 51 --------RKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred --------CCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 144567899999999999999999997
No 232
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.47 E-value=1.9e-06 Score=90.54 Aligned_cols=185 Identities=19% Similarity=0.289 Sum_probs=110.6
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh----CC-CeEEEeccccccccc-------------cccchhhHHHHHHHhhchh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV----NV-PFTITDATALTQAGY-------------VGEDAESVLYKLLAAADFD 223 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l----~~-p~~~~~~s~l~~~gy-------------~G~~~~~~l~~l~~~~~~~ 223 (510)
..+++.+.|-||||||.+...+-..+ -. ..++++|..+..++- .+...+......|...-
T Consensus 174 t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~-- 251 (529)
T KOG2227|consen 174 TSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHT-- 251 (529)
T ss_pred cCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH--
Confidence 55789999999999999988766544 12 348999998775421 11111111112222210
Q ss_pred HHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCc
Q 038067 224 VEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAF 303 (510)
Q Consensus 224 ~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~ 303 (510)
......-|+++||+|.+.... +..|+.+++ +| ...++++++|--+|.
T Consensus 252 ~q~k~~~llVlDEmD~L~tr~-------------~~vLy~lFe-----wp---------------~lp~sr~iLiGiANs 298 (529)
T KOG2227|consen 252 KQSKFMLLLVLDEMDHLITRS-------------QTVLYTLFE-----WP---------------KLPNSRIILIGIANS 298 (529)
T ss_pred hcccceEEEEechhhHHhhcc-------------cceeeeehh-----cc---------------cCCcceeeeeeehhh
Confidence 011234699999999998542 667777775 11 123344444443442
Q ss_pred cchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhccc---CceEecCCCCHHHHH
Q 038067 304 VGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRF---PILVSLSALNEDQLV 380 (510)
Q Consensus 304 ~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~---~~iv~f~~Ls~eel~ 380 (510)
-+|-+ .|-|-|..|. +.++.|.|++.+++.
T Consensus 299 lDlTd-----------------------------------------------R~LprL~~~~~~~P~~l~F~PYTk~qI~ 331 (529)
T KOG2227|consen 299 LDLTD-----------------------------------------------RFLPRLNLDLTIKPKLLVFPPYTKDQIV 331 (529)
T ss_pred hhHHH-----------------------------------------------HHhhhhhhccCCCCceeeecCCCHHHHH
Confidence 22211 1223333322 357899999999999
Q ss_pred HHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHH
Q 038067 381 QVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEA 440 (510)
Q Consensus 381 ~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~ 440 (510)
+|+...+.. .. ...+-+.|++.+|++.....++.|.+-.++++.+.=+
T Consensus 332 ~Il~~rl~~-----------~~-t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~aiEI~ 379 (529)
T KOG2227|consen 332 EILQQRLSE-----------ES-TSIFLNAAIELCARKVAAPSGDLRKALDVCRRAIEIA 379 (529)
T ss_pred HHHHHHHhc-----------cc-ccccchHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 999863322 11 2234457999999997777777888888887666433
No 233
>PRK12377 putative replication protein; Provisional
Probab=98.47 E-value=4.2e-07 Score=90.19 Aligned_cols=85 Identities=16% Similarity=0.280 Sum_probs=55.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccccc---cccccchhhHHHHHHHhhchhHHHhcCcEEEEcch
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALTQA---GYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEV 237 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~~~---gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEi 237 (510)
.+++|+||||||||+||.++++.+ +..++.++..++... .|... ......++. -....+|+|||+
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~---~~~~~~l~~------l~~~dLLiIDDl 172 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNG---QSGEKFLQE------LCKVDLLVLDEI 172 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhcc---chHHHHHHH------hcCCCEEEEcCC
Confidence 589999999999999999999988 567777777666531 11000 001111111 134579999999
Q ss_pred hhhhhhccCCCCCCCchhhHHHHHHHHhhCc
Q 038067 238 DKIVKAESRNNGRDVSGEGVQQALLKMLEGT 268 (510)
Q Consensus 238 dkl~~~~~~~~~~~~~~~~v~~~LL~~leg~ 268 (510)
+...... ..++.|+++++.+
T Consensus 173 g~~~~s~-----------~~~~~l~~ii~~R 192 (248)
T PRK12377 173 GIQRETK-----------NEQVVLNQIIDRR 192 (248)
T ss_pred CCCCCCH-----------HHHHHHHHHHHHH
Confidence 7643221 2588999999853
No 234
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=4.9e-07 Score=99.40 Aligned_cols=146 Identities=18% Similarity=0.335 Sum_probs=98.9
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhhh
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIVK 242 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~~ 242 (510)
...+||+|+||||||++++++|+.++.+++.+||.++... -.++. +..+...+.++ +..+++||||-.+|-+.-
T Consensus 431 ~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~-s~~~~-etkl~~~f~~a----~~~~pavifl~~~dvl~i 504 (953)
T KOG0736|consen 431 NPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAE-SASHT-ETKLQAIFSRA----RRCSPAVLFLRNLDVLGI 504 (953)
T ss_pred ceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhc-ccchh-HHHHHHHHHHH----hhcCceEEEEeccceeee
Confidence 3579999999999999999999999999999999998743 12222 44455555554 457899999999998873
Q ss_pred hccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCcC
Q 038067 243 AESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGFG 322 (510)
Q Consensus 243 ~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf~ 322 (510)
.. +++.+. .++..+-..+.. +. .......++||++.+..
T Consensus 505 d~--dgged~---rl~~~i~~~ls~--------e~----------~~~~~~~~ivv~t~~s~------------------ 543 (953)
T KOG0736|consen 505 DQ--DGGEDA---RLLKVIRHLLSN--------ED----------FKFSCPPVIVVATTSSI------------------ 543 (953)
T ss_pred cC--CCchhH---HHHHHHHHHHhc--------cc----------ccCCCCceEEEEecccc------------------
Confidence 32 222222 244444444431 00 01123345666665410
Q ss_pred cccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchh
Q 038067 323 APVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPK 387 (510)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~ 387 (510)
.+++|.+.+-+...+.++.+++++..+|++-..
T Consensus 544 --------------------------------~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~ 576 (953)
T KOG0736|consen 544 --------------------------------EDLPADIQSLFLHEIEVPALSEEQRLEILQWYL 576 (953)
T ss_pred --------------------------------ccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHH
Confidence 236777888888888999999999999987644
No 235
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.46 E-value=1.8e-06 Score=88.77 Aligned_cols=136 Identities=18% Similarity=0.176 Sum_probs=84.8
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCC--CeEEEecc--------------ccc--cccccccch-hhHHHHHHHhhch
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNV--PFTITDAT--------------ALT--QAGYVGEDA-ESVLYKLLAAADF 222 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~--p~~~~~~s--------------~l~--~~gy~G~~~-~~~l~~l~~~~~~ 222 (510)
-++.+||.||.|+||+++|+.+|+.+.. +- ...|. ++. .+..-|... -..++.+.+....
T Consensus 24 l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~-~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~ 102 (319)
T PRK06090 24 IPGALLLQSDEGLGVESLVELFSRALLCQNYQ-SEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQE 102 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHcCCCCC-CCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHhh
Confidence 4567999999999999999999998821 10 00111 110 000001110 1123333322211
Q ss_pred hHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCC
Q 038067 223 DVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGA 302 (510)
Q Consensus 223 ~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~ 302 (510)
....+...|++||++|+|..+ ..|+||+.||+ ...+++||+.++
T Consensus 103 ~~~~~~~kV~iI~~ae~m~~~-------------AaNaLLKtLEE-----------------------Pp~~t~fiL~t~ 146 (319)
T PRK06090 103 SSQLNGYRLFVIEPADAMNES-------------ASNALLKTLEE-----------------------PAPNCLFLLVTH 146 (319)
T ss_pred CcccCCceEEEecchhhhCHH-------------HHHHHHHHhcC-----------------------CCCCeEEEEEEC
Confidence 112234579999999999865 69999999984 234566777654
Q ss_pred ccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHH
Q 038067 303 FVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQV 382 (510)
Q Consensus 303 ~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~I 382 (510)
.. ..+.|.+++|+-.+ .|.+++.+++.+.
T Consensus 147 ~~--------------------------------------------------~~lLpTI~SRCq~~-~~~~~~~~~~~~~ 175 (319)
T PRK06090 147 NQ--------------------------------------------------KRLLPTIVSRCQQW-VVTPPSTAQAMQW 175 (319)
T ss_pred Ch--------------------------------------------------hhChHHHHhcceeE-eCCCCCHHHHHHH
Confidence 11 12677889999754 9999999998887
Q ss_pred Hhc
Q 038067 383 LME 385 (510)
Q Consensus 383 l~~ 385 (510)
+..
T Consensus 176 L~~ 178 (319)
T PRK06090 176 LKG 178 (319)
T ss_pred HHH
Confidence 764
No 236
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.46 E-value=2.8e-06 Score=84.64 Aligned_cols=39 Identities=26% Similarity=0.523 Sum_probs=33.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhC--CCeEEEeccccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVN--VPFTITDATALT 200 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~--~p~~~~~~s~l~ 200 (510)
..+.+|+.|+||||||.+|-.+++.+| .||..+..+++-
T Consensus 65 aGraiLiaG~pgtGKtAiAmg~sksLG~~tpF~~i~gSEI~ 105 (454)
T KOG2680|consen 65 AGRAILIAGQPGTGKTAIAMGMSKSLGDDTPFTSISGSEIY 105 (454)
T ss_pred cceEEEEecCCCCCceeeeeehhhhhCCCCceeeeecceee
Confidence 557899999999999999999999995 589888877643
No 237
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.44 E-value=1.1e-06 Score=90.59 Aligned_cols=91 Identities=19% Similarity=0.247 Sum_probs=55.6
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCC--C-----------------------eEEEecccc-cccccc--ccchhhHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNV--P-----------------------FTITDATAL-TQAGYV--GEDAESVL 213 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~--p-----------------------~~~~~~s~l-~~~gy~--G~~~~~~l 213 (510)
-++.+||+||+|+|||++|+.+|+.+.. | |+.++...- .+.|.. .-. -..+
T Consensus 20 ~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~-id~i 98 (325)
T PRK08699 20 RPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIK-IDAV 98 (325)
T ss_pred cceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcC-HHHH
Confidence 4567999999999999999999998831 1 122221100 000100 001 1234
Q ss_pred HHHHHhhchhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhh
Q 038067 214 YKLLAAADFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLE 266 (510)
Q Consensus 214 ~~l~~~~~~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~le 266 (510)
+++.......-..+...|++||+++.+... .++.|++.||
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~-------------a~naLLk~LE 138 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMNLQ-------------AANSLLKVLE 138 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCCHH-------------HHHHHHHHHH
Confidence 444433322112345679999999999876 6999999998
No 238
>PF10431 ClpB_D2-small: C-terminal, D2-small domain, of ClpB protein ; InterPro: IPR019489 Most Clp ATPases form complexes with peptidase subunits and are involved in protein degradation, though some, such as ClpB, do not associate with peptidases and are involved in protein disaggregation []. This entry represents the C-terminal domain of Clp ATPases, often referred to as the D2-small domain, which forms a mixed alpha-beta structure. Compared with the adjacent AAA D1-small domain (IPR003959 from INTERPRO) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerisation, forming a tight interface with the D2-large domain of a neighbouring subunit, thereby providing enough binding energy to stabilise the functional assembly [].; PDB: 3HWS_A 3HTE_F 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 3PXI_A 1R6B_X ....
Probab=98.43 E-value=5.7e-07 Score=73.68 Aligned_cols=68 Identities=22% Similarity=0.376 Sum_probs=57.0
Q ss_pred CCHHHHHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHHhcCc
Q 038067 374 LNEDQLVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIP 445 (510)
Q Consensus 374 Ls~eel~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~~~~ 445 (510)
|+.+++.+|+...+..+.++ +..+++.+.++++++++|++.++++.+|||+|+++|++.+.+++++..
T Consensus 1 L~~~~l~~I~~~~l~~l~~~----l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i~~~la~~i 68 (81)
T PF10431_consen 1 LSEEDLEKIADLQLKKLNER----LKEKGIELEFDDAVVDYLAEKGYDPEYGARPLRRIIEREIEPPLADAI 68 (81)
T ss_dssp --HHHHHHHHHSHHHHHHHH----HHHTTEEEEE-HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH----HHHCCCeEEecHHHHHHHHHhCcccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999866555444 455899999999999999999999999999999999999999998754
No 239
>PRK08181 transposase; Validated
Probab=98.41 E-value=3.7e-07 Score=91.69 Aligned_cols=87 Identities=23% Similarity=0.358 Sum_probs=56.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVD 238 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEid 238 (510)
...+++|+||||||||+||.+++..+ +..++.+++.++... +............++. -....+|+|||++
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~-l~~a~~~~~~~~~l~~------l~~~dLLIIDDlg 177 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQK-LQVARRELQLESAIAK------LDKFDLLILDDLA 177 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHH-HHHHHhCCcHHHHHHH------HhcCCEEEEeccc
Confidence 56789999999999999999999866 667777777766532 1000000111111111 1244699999999
Q ss_pred hhhhhccCCCCCCCchhhHHHHHHHHhh
Q 038067 239 KIVKAESRNNGRDVSGEGVQQALLKMLE 266 (510)
Q Consensus 239 kl~~~~~~~~~~~~~~~~v~~~LL~~le 266 (510)
...... ..++.|+++++
T Consensus 178 ~~~~~~-----------~~~~~Lf~lin 194 (269)
T PRK08181 178 YVTKDQ-----------AETSVLFELIS 194 (269)
T ss_pred cccCCH-----------HHHHHHHHHHH
Confidence 865432 25778899987
No 240
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.36 E-value=8.1e-07 Score=78.43 Aligned_cols=89 Identities=24% Similarity=0.379 Sum_probs=52.7
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh--------CCCeEEEeccccccc-----------cccc---cchhhHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV--------NVPFTITDATALTQA-----------GYVG---EDAESVLYKLLAA 219 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l--------~~p~~~~~~s~l~~~-----------gy~G---~~~~~~l~~l~~~ 219 (510)
..+.++++||||+|||++++.+++.+ ..+++.+++...... +... .+..... ..+.+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~-~~~~~ 81 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELR-SLLID 81 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHH-HHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHH-HHHHH
Confidence 34679999999999999999999987 667787777654411 1110 1111111 11111
Q ss_pred hchhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhh
Q 038067 220 ADFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLE 266 (510)
Q Consensus 220 ~~~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~le 266 (510)
.+......+|+|||+|.+. .. .+.+.|..+++
T Consensus 82 ---~l~~~~~~~lviDe~~~l~-~~-----------~~l~~l~~l~~ 113 (131)
T PF13401_consen 82 ---ALDRRRVVLLVIDEADHLF-SD-----------EFLEFLRSLLN 113 (131)
T ss_dssp ---HHHHCTEEEEEEETTHHHH-TH-----------HHHHHHHHHTC
T ss_pred ---HHHhcCCeEEEEeChHhcC-CH-----------HHHHHHHHHHh
Confidence 1222233599999999984 11 37888888775
No 241
>PRK06526 transposase; Provisional
Probab=98.35 E-value=3.4e-07 Score=91.24 Aligned_cols=87 Identities=22% Similarity=0.265 Sum_probs=53.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVD 238 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEid 238 (510)
.+.|++|+||||||||+||.+|+..+ +..+...++.++...-..... .+.+...+.. -....+|+|||++
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~-~~~~~~~l~~------l~~~dlLIIDD~g 169 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHH-AGRLQAELVK------LGRYPLLIVDEVG 169 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHh-cCcHHHHHHH------hccCCEEEEcccc
Confidence 46799999999999999999998876 556555555544321000000 1111111111 1345799999999
Q ss_pred hhhhhccCCCCCCCchhhHHHHHHHHhh
Q 038067 239 KIVKAESRNNGRDVSGEGVQQALLKMLE 266 (510)
Q Consensus 239 kl~~~~~~~~~~~~~~~~v~~~LL~~le 266 (510)
.+.... ..++.|+++++
T Consensus 170 ~~~~~~-----------~~~~~L~~li~ 186 (254)
T PRK06526 170 YIPFEP-----------EAANLFFQLVS 186 (254)
T ss_pred cCCCCH-----------HHHHHHHHHHH
Confidence 865332 25778888886
No 242
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.32 E-value=1e-06 Score=88.63 Aligned_cols=166 Identities=20% Similarity=0.221 Sum_probs=100.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhCCC------eEEEeccccccccccccchhhHHHHHHHhhc--hhHH-HhcCcEEEE
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVNVP------FTITDATALTQAGYVGEDAESVLYKLLAAAD--FDVE-AAQRGIVYI 234 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~~p------~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~--~~~~-~~~~~Vl~i 234 (510)
.|+|+|||||+|||+...+.|+.+-.| +..+++++-. |-++...-...|.... -.+. .+....++|
T Consensus 63 Ph~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~r-----gid~vr~qi~~fast~~~~~fst~~~fKlvIL 137 (360)
T KOG0990|consen 63 PHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDR-----GIDPVRQQIHLFASTQQPTTYSTHAAFKLVIL 137 (360)
T ss_pred CcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCcc-----CCcchHHHHHHHHhhccceeccccCceeEEEe
Confidence 399999999999999999999988433 1223333322 1111111111111110 0011 124568999
Q ss_pred cchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhc
Q 038067 235 DEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERR 314 (510)
Q Consensus 235 DEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~ 314 (510)
||.|.+..+ .|++|.+.+|. .|.|+-|+.-+|..
T Consensus 138 DEADaMT~~-------------AQnALRRviek-----------------------~t~n~rF~ii~n~~---------- 171 (360)
T KOG0990|consen 138 DEADAMTRD-------------AQNALRRVIEK-----------------------YTANTRFATISNPP---------- 171 (360)
T ss_pred cchhHhhHH-------------HHHHHHHHHHH-----------------------hccceEEEEeccCh----------
Confidence 999999876 79999998872 23344444334411
Q ss_pred ccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHH
Q 038067 315 QDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQY 394 (510)
Q Consensus 315 ~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~ 394 (510)
....|++.+|+... .|.|++.++...++.+.+
T Consensus 172 ----------------------------------------~ki~pa~qsRctrf-rf~pl~~~~~~~r~shi~------- 203 (360)
T KOG0990|consen 172 ----------------------------------------QKIHPAQQSRCTRF-RFAPLTMAQQTERQSHIR------- 203 (360)
T ss_pred ----------------------------------------hhcCchhhcccccC-CCCCCChhhhhhHHHHHH-------
Confidence 12678899999886 999999888777776422
Q ss_pred HHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHH
Q 038067 395 KKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENIL 437 (510)
Q Consensus 395 ~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l 437 (510)
+.-.+..+++....+++.. .+..|..-+.|+...
T Consensus 204 ------e~e~~~~~~~~~~a~~r~s---~gDmr~a~n~Lqs~~ 237 (360)
T KOG0990|consen 204 ------ESEQKETNPEGYSALGRLS---VGDMRVALNYLQSIL 237 (360)
T ss_pred ------hcchhhcCHHHHHHHHHHh---HHHHHHHHHHHHHHH
Confidence 2233456777777766654 344565556666544
No 243
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.30 E-value=3.5e-05 Score=77.90 Aligned_cols=77 Identities=19% Similarity=0.328 Sum_probs=47.8
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhC---------CCeEEEeccccccc-----------c--ccccchhhHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVN---------VPFTITDATALTQA-----------G--YVGEDAESVLYKLLAA 219 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~---------~p~~~~~~s~l~~~-----------g--y~G~~~~~~l~~l~~~ 219 (510)
...++||+|+|+.|||++++.+.+... .|++.+.+..-... | |... .....+...
T Consensus 60 Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~---~~~~~~~~~ 136 (302)
T PF05621_consen 60 RMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPR---DRVAKLEQQ 136 (302)
T ss_pred CCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCC---CCHHHHHHH
Confidence 346899999999999999999997661 47777776432210 1 1111 111122222
Q ss_pred hchhHHHhcCcEEEEcchhhhh
Q 038067 220 ADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 220 ~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
....++.-..-+|+|||++.+.
T Consensus 137 ~~~llr~~~vrmLIIDE~H~lL 158 (302)
T PF05621_consen 137 VLRLLRRLGVRMLIIDEFHNLL 158 (302)
T ss_pred HHHHHHHcCCcEEEeechHHHh
Confidence 2223344566799999999975
No 244
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.30 E-value=5.3e-07 Score=85.18 Aligned_cols=85 Identities=22% Similarity=0.349 Sum_probs=53.2
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccccc---cccccchhhHHHHHHHhhchhHHHhcCcEEEEc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALTQA---GYVGEDAESVLYKLLAAADFDVEAAQRGIVYID 235 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~~~---gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iD 235 (510)
.+.+++|+||||||||+||-++++.+ +.++..++..++... .+........+..+ ....+|+||
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l----------~~~dlLilD 115 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRL----------KRVDLLILD 115 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHH----------HTSSCEEEE
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCcc----------ccccEeccc
Confidence 34689999999999999999999877 788888888876532 11111111122111 234699999
Q ss_pred chhhhhhhccCCCCCCCchhhHHHHHHHHhhC
Q 038067 236 EVDKIVKAESRNNGRDVSGEGVQQALLKMLEG 267 (510)
Q Consensus 236 Eidkl~~~~~~~~~~~~~~~~v~~~LL~~leg 267 (510)
|+....... ...+.|+++++.
T Consensus 116 DlG~~~~~~-----------~~~~~l~~ii~~ 136 (178)
T PF01695_consen 116 DLGYEPLSE-----------WEAELLFEIIDE 136 (178)
T ss_dssp TCTSS---H-----------HHHHCTHHHHHH
T ss_pred ccceeeecc-----------cccccchhhhhH
Confidence 998644221 256778888873
No 245
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.26 E-value=6.7e-06 Score=79.18 Aligned_cols=49 Identities=27% Similarity=0.448 Sum_probs=26.8
Q ss_pred chhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhh
Q 038067 358 IPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKA 419 (510)
Q Consensus 358 ~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~ 419 (510)
.+++.+|+.. +.+.+++.++..+++... +... ..+.++++.++.+....
T Consensus 176 ~~~~~~~~~~-~~l~~l~~~e~~~~~~~~-----------~~~~-~~~~~~~~~~~~i~~~~ 224 (234)
T PF01637_consen 176 KSPLFGRFSH-IELKPLSKEEAREFLKEL-----------FKEL-IKLPFSDEDIEEIYSLT 224 (234)
T ss_dssp TSTTTT---E-EEE----HHHHHHHHHHH-----------HHCC-------HHHHHHHHHHH
T ss_pred cCccccccce-EEEeeCCHHHHHHHHHHH-----------HHHh-hcccCCHHHHHHHHHHh
Confidence 4468889998 799999999998888742 1222 23345899999998874
No 246
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=98.22 E-value=4.3e-07 Score=97.57 Aligned_cols=94 Identities=23% Similarity=0.344 Sum_probs=54.1
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccc---cccchhhHHHHHHHhhchhHHHhcCcEEEEcchh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGY---VGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVD 238 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy---~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEid 238 (510)
.-.|+||+|.|||||+-..|.+++...+.++..--.. +..|. +-.+. ..+++.-. .+.+-.+..||-+|||+|
T Consensus 481 GDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGA-SavGLTa~v~KdP--vtrEWTLE-aGALVLADkGvClIDEFD 556 (854)
T KOG0477|consen 481 GDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGA-SAVGLTAYVRKDP--VTREWTLE-AGALVLADKGVCLIDEFD 556 (854)
T ss_pred cceeEEEecCCCccHHHHHHHHHhcCcceeEeccCCc-cccceeEEEeeCC--ccceeeec-cCeEEEccCceEEeehhh
Confidence 4569999999999999999999998865443321111 11121 11110 00011000 112234677999999999
Q ss_pred hhhhhccCCCCCCCchhhHHHHHHHHhhCceeee
Q 038067 239 KIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNV 272 (510)
Q Consensus 239 kl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i 272 (510)
||.... ...+-.+||...+.|
T Consensus 557 KMndqD-------------RtSIHEAMEQQSISI 577 (854)
T KOG0477|consen 557 KMNDQD-------------RTSIHEAMEQQSISI 577 (854)
T ss_pred hhcccc-------------cchHHHHHHhcchhh
Confidence 997432 346677777443333
No 247
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=98.19 E-value=5.8e-07 Score=94.76 Aligned_cols=103 Identities=23% Similarity=0.353 Sum_probs=56.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeE-EEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFT-ITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKI 240 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~-~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl 240 (510)
..-|+||.|.|||.|+-+.+-+-+.. |+. +.+...-..+|....-.....+.-|-...+..-.+.+||++|||+|||
T Consensus 363 GDINVLLLGDPgtAKSQlLKFvEkvs--PIaVYTSGKGSSAAGLTASV~RD~~tReFylEGGAMVLADgGVvCIDEFDKM 440 (729)
T KOG0481|consen 363 GDINVLLLGDPGTAKSQLLKFVEKVS--PIAVYTSGKGSSAAGLTASVIRDPSTREFYLEGGAMVLADGGVVCIDEFDKM 440 (729)
T ss_pred cceeEEEecCCchhHHHHHHHHHhcC--ceEEEecCCCcccccceeeEEecCCcceEEEecceEEEecCCEEEeehhhcc
Confidence 44699999999999999999887765 332 222221111221100000000000000011112367899999999998
Q ss_pred hhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCC
Q 038067 241 VKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRK 281 (510)
Q Consensus 241 ~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~ 281 (510)
-... .-++-.+||...+.|. ..|-++
T Consensus 441 re~D-------------RVAIHEAMEQQTISIA--KAGITT 466 (729)
T KOG0481|consen 441 REDD-------------RVAIHEAMEQQTISIA--KAGITT 466 (729)
T ss_pred Cchh-------------hhHHHHHHHhhhHHHh--hhccee
Confidence 6542 4577888886555554 445443
No 248
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.19 E-value=5.8e-06 Score=71.36 Aligned_cols=85 Identities=18% Similarity=0.296 Sum_probs=47.0
Q ss_pred EEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhhhhcc
Q 038067 166 VLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIVKAES 245 (510)
Q Consensus 166 vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~~~~~ 245 (510)
|.|+||||+|||++|+.|++.+...+-.-....+ |........... + ....++++||+.......
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~v----y~~~~~~~~w~g------Y----~~q~vvi~DD~~~~~~~~- 65 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSV----YTRNPGDKFWDG------Y----QGQPVVIIDDFGQDNDGY- 65 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcE----EeCCCccchhhc------c----CCCcEEEEeecCcccccc-
Confidence 5799999999999999999887322200000000 110000111100 0 123589999999854320
Q ss_pred CCCCCCCchhhHHHHHHHHhhCceeeec
Q 038067 246 RNNGRDVSGEGVQQALLKMLEGTVVNVP 273 (510)
Q Consensus 246 ~~~~~~~~~~~v~~~LL~~leg~~~~i~ 273 (510)
.......|+++++...+..+
T Consensus 66 --------~~~~~~~l~~l~s~~~~~~~ 85 (107)
T PF00910_consen 66 --------NYSDESELIRLISSNPFQPN 85 (107)
T ss_pred --------chHHHHHHHHHHhcCCcccc
Confidence 01257788899886555544
No 249
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.17 E-value=4.6e-06 Score=82.62 Aligned_cols=85 Identities=16% Similarity=0.289 Sum_probs=55.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccccc---cccccchhhHHHHHHHhhchhHHHhcCcEEEEcch
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALTQA---GYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEV 237 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~~~---gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEi 237 (510)
.+++|+|+||||||+|+.++++.+ +.+++.++..++... .|. .. ......+++. -....+|+|||+
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~-~~-~~~~~~~l~~------l~~~dlLvIDDi 171 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFS-NS-ETSEEQLLND------LSNVDLLVIDEI 171 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHh-hc-cccHHHHHHH------hccCCEEEEeCC
Confidence 479999999999999999999988 678888887776521 110 00 0001111111 124569999999
Q ss_pred hhhhhhccCCCCCCCchhhHHHHHHHHhhC
Q 038067 238 DKIVKAESRNNGRDVSGEGVQQALLKMLEG 267 (510)
Q Consensus 238 dkl~~~~~~~~~~~~~~~~v~~~LL~~leg 267 (510)
+...... -....|.++++.
T Consensus 172 g~~~~s~-----------~~~~~l~~Ii~~ 190 (244)
T PRK07952 172 GVQTESR-----------YEKVIINQIVDR 190 (244)
T ss_pred CCCCCCH-----------HHHHHHHHHHHH
Confidence 9854221 145678888874
No 250
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.16 E-value=1.2e-05 Score=81.28 Aligned_cols=92 Identities=20% Similarity=0.140 Sum_probs=54.7
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEecc--------cc---ccccccc-cchhhHHHHHHHhhchhHHHhcC
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDAT--------AL---TQAGYVG-EDAESVLYKLLAAADFDVEAAQR 229 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s--------~l---~~~gy~G-~~~~~~l~~l~~~~~~~~~~~~~ 229 (510)
-++.+||+||.|+||+.+|..+|+.+...-..-.|. ++ ...+... -.+ ..++.+.+.....-..+..
T Consensus 18 l~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~i-dqiR~l~~~~~~~p~e~~~ 96 (290)
T PRK05917 18 VPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSI-ETPRAIKKQIWIHPYESPY 96 (290)
T ss_pred cCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcH-HHHHHHHHHHhhCccCCCc
Confidence 456799999999999999999999883210000110 11 0000000 011 1233433332111122455
Q ss_pred cEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhC
Q 038067 230 GIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEG 267 (510)
Q Consensus 230 ~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg 267 (510)
-|++||++|+|... .+++||+.||.
T Consensus 97 kv~ii~~ad~mt~~-------------AaNaLLK~LEE 121 (290)
T PRK05917 97 KIYIIHEADRMTLD-------------AISAFLKVLED 121 (290)
T ss_pred eEEEEechhhcCHH-------------HHHHHHHHhhc
Confidence 79999999999866 69999999984
No 251
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.14 E-value=3.4e-05 Score=84.30 Aligned_cols=32 Identities=38% Similarity=0.489 Sum_probs=27.6
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhCCCeEEE
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVNVPFTIT 194 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~ 194 (510)
..-+||+||||||||++++.||+.++..+..-
T Consensus 45 ~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew 76 (519)
T PF03215_consen 45 KRILLLTGPSGCGKTTTVKVLAKELGFEVQEW 76 (519)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCeeEEe
Confidence 34699999999999999999999998766553
No 252
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.13 E-value=2.6e-06 Score=85.88 Aligned_cols=150 Identities=19% Similarity=0.342 Sum_probs=82.0
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhC-CC--eEEEeccccccccccccchhhHHHHHHHhh----c---hhHHHhcCcE
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVN-VP--FTITDATALTQAGYVGEDAESVLYKLLAAA----D---FDVEAAQRGI 231 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~-~p--~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~----~---~~~~~~~~~V 231 (510)
...++||+||+|||||++++.+-+.+. .. ...++++..+.+ ..+...++.. . +--......|
T Consensus 32 ~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts--------~~~q~~ie~~l~k~~~~~~gP~~~k~lv 103 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTS--------NQLQKIIESKLEKRRGRVYGPPGGKKLV 103 (272)
T ss_dssp CTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHH--------HHHHHCCCTTECECTTEEEEEESSSEEE
T ss_pred cCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCH--------HHHHHHHhhcEEcCCCCCCCCCCCcEEE
Confidence 457899999999999999988766553 33 234455443321 2222222111 0 0001234469
Q ss_pred EEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhh-CceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHH
Q 038067 232 VYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLE-GTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTI 310 (510)
Q Consensus 232 l~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~le-g~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i 310 (510)
+|||++.--.... .+...+.+.|.+++| |+.++ ..+.-.....++.||++.+..+
T Consensus 104 ~fiDDlN~p~~d~-------ygtq~~iElLRQ~i~~~g~yd------------~~~~~~~~i~~i~~vaa~~p~~----- 159 (272)
T PF12775_consen 104 LFIDDLNMPQPDK-------YGTQPPIELLRQLIDYGGFYD------------RKKLEWKSIEDIQFVAAMNPTG----- 159 (272)
T ss_dssp EEEETTT-S---T-------TS--HHHHHHHHHHHCSEEEC------------TTTTEEEEECSEEEEEEESSTT-----
T ss_pred EEecccCCCCCCC-------CCCcCHHHHHHHHHHhcCccc------------CCCcEEEEEeeeEEEEecCCCC-----
Confidence 9999999633221 111246788889998 44442 1112345667888887765210
Q ss_pred HhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhch
Q 038067 311 SERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEP 386 (510)
Q Consensus 311 ~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~ 386 (510)
| +..+.|-|++.|. ++.+.+++.+.+..|....
T Consensus 160 ---------G---------------------------------r~~is~R~~r~f~-i~~~~~p~~~sl~~If~~i 192 (272)
T PF12775_consen 160 ---------G---------------------------------RNPISPRFLRHFN-ILNIPYPSDESLNTIFSSI 192 (272)
T ss_dssp ---------T-----------------------------------SHHHHHHTTEE-EEE----TCCHHHHHHHHH
T ss_pred ---------C---------------------------------CCCCChHHhhheE-EEEecCCChHHHHHHHHHH
Confidence 0 0114556776675 4589999999999999753
No 253
>PRK09183 transposase/IS protein; Provisional
Probab=98.11 E-value=4.2e-06 Score=83.75 Aligned_cols=88 Identities=20% Similarity=0.319 Sum_probs=54.1
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVD 238 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEid 238 (510)
...+++|+||||||||+||.+++..+ |..+..+++.++... +......+.+...+... .....+++|||++
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~-l~~a~~~~~~~~~~~~~-----~~~~dlLiiDdlg 174 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQ-LSTAQRQGRYKTTLQRG-----VMAPRLLIIDEIG 174 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHH-HHHHHHCCcHHHHHHHH-----hcCCCEEEEcccc
Confidence 45789999999999999999998765 566666666655421 10000011111222110 1245699999998
Q ss_pred hhhhhccCCCCCCCchhhHHHHHHHHhh
Q 038067 239 KIVKAESRNNGRDVSGEGVQQALLKMLE 266 (510)
Q Consensus 239 kl~~~~~~~~~~~~~~~~v~~~LL~~le 266 (510)
...... ...+.|+++++
T Consensus 175 ~~~~~~-----------~~~~~lf~li~ 191 (259)
T PRK09183 175 YLPFSQ-----------EEANLFFQVIA 191 (259)
T ss_pred cCCCCh-----------HHHHHHHHHHH
Confidence 754321 14667888886
No 254
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.10 E-value=2e-06 Score=88.78 Aligned_cols=86 Identities=21% Similarity=0.312 Sum_probs=54.8
Q ss_pred CceEEEEccCCChHHHHHHHHHHHh---CCCeEEEecccccccc---ccccchhhHHHHHHHhhchhHHHhcCcEEEEcc
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALTQAG---YVGEDAESVLYKLLAAADFDVEAAQRGIVYIDE 236 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~~~g---y~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDE 236 (510)
..+++|+||||||||+||.++|+.+ +..++.+++.++...- +.... ......+.. -..--+|+|||
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~--~~~~~~~~~------l~~~DLLIIDD 254 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNND--KELEEVYDL------LINCDLLIIDD 254 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccc--hhHHHHHHH------hccCCEEEEec
Confidence 3689999999999999999999988 6677888877764310 00000 000000110 12336999999
Q ss_pred hhhhhhhccCCCCCCCchhhHHHHHHHHhhC
Q 038067 237 VDKIVKAESRNNGRDVSGEGVQQALLKMLEG 267 (510)
Q Consensus 237 idkl~~~~~~~~~~~~~~~~v~~~LL~~leg 267 (510)
+....... ..++.|+.+++.
T Consensus 255 lG~e~~t~-----------~~~~~Lf~iin~ 274 (329)
T PRK06835 255 LGTEKITE-----------FSKSELFNLINK 274 (329)
T ss_pred cCCCCCCH-----------HHHHHHHHHHHH
Confidence 98754221 257788888873
No 255
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.05 E-value=7.6e-06 Score=81.66 Aligned_cols=71 Identities=24% Similarity=0.377 Sum_probs=49.3
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccccc---cccccchhhHHHHHHHhhchhHHHhcCcEEEEc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALTQA---GYVGEDAESVLYKLLAAADFDVEAAQRGIVYID 235 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~~~---gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iD 235 (510)
.+.+++|+||||||||+||-++++.+ |.++..+...++... .+-....+..+...+ ..--+|+||
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l---------~~~dlLIiD 174 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLREL---------KKVDLLIID 174 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHh---------hcCCEEEEe
Confidence 56799999999999999999999888 678888888777532 111001112222212 234699999
Q ss_pred chhhhh
Q 038067 236 EVDKIV 241 (510)
Q Consensus 236 Eidkl~ 241 (510)
|+....
T Consensus 175 DlG~~~ 180 (254)
T COG1484 175 DIGYEP 180 (254)
T ss_pred cccCcc
Confidence 999865
No 256
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.99 E-value=1.1e-05 Score=82.69 Aligned_cols=69 Identities=16% Similarity=0.280 Sum_probs=46.1
Q ss_pred CceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccccc---cccccchhhHHHHHHHhhchhHHHhcCcEEEEcc
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALTQA---GYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDE 236 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~~~---gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDE 236 (510)
..+++|+||+|||||+||.++|+.+ +.++..+.+.++... .+ +. +.+...+.. -....+|+|||
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~-~~---~~~~~~l~~------l~~~dlLiIDD 225 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSI-SD---GSVKEKIDA------VKEAPVLMLDD 225 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHH-hc---CcHHHHHHH------hcCCCEEEEec
Confidence 4689999999999999999999998 677777777665421 01 11 011111111 12446999999
Q ss_pred hhhhh
Q 038067 237 VDKIV 241 (510)
Q Consensus 237 idkl~ 241 (510)
+..-.
T Consensus 226 iG~e~ 230 (306)
T PRK08939 226 IGAEQ 230 (306)
T ss_pred CCCcc
Confidence 98743
No 257
>PRK06921 hypothetical protein; Provisional
Probab=97.98 E-value=1.6e-05 Score=79.84 Aligned_cols=37 Identities=32% Similarity=0.392 Sum_probs=29.9
Q ss_pred CceEEEEccCCChHHHHHHHHHHHh----CCCeEEEecccc
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIV----NVPFTITDATAL 199 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l----~~p~~~~~~s~l 199 (510)
..+++|+||||||||+|+.++|+.+ +..++.++..++
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l 157 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEG 157 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHH
Confidence 4689999999999999999999877 455666665544
No 258
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=97.91 E-value=3.4e-05 Score=82.82 Aligned_cols=114 Identities=24% Similarity=0.325 Sum_probs=63.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEecc-ccccccc---cccchhhHHHHHHHhhchhHHHhcCcEEEEcch
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDAT-ALTQAGY---VGEDAESVLYKLLAAADFDVEAAQRGIVYIDEV 237 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s-~l~~~gy---~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEi 237 (510)
..-|+||+|.|-|.|+-|.|.+-+.. |..+..-. .-...|. +-.+.+.--+.+ +. +..-.+..||++|||+
T Consensus 333 GDINiLlvGDPSvAKSQLLRyVLntA--plAI~TTGRGSSGVGLTAAVTtD~eTGERRL-EA--GAMVLADRGVVCIDEF 407 (818)
T KOG0479|consen 333 GDINILLVGDPSVAKSQLLRYVLNTA--PLAIATTGRGSSGVGLTAAVTTDQETGERRL-EA--GAMVLADRGVVCIDEF 407 (818)
T ss_pred cceeEEEecCchHHHHHHHHHHHhcc--cccccccCCCCCCccceeEEeeccccchhhh-hc--CceEEccCceEEehhc
Confidence 34589999999999999999987765 22111100 0000011 000000000011 11 1112356799999999
Q ss_pred hhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCc
Q 038067 238 DKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDI 295 (510)
Q Consensus 238 dkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsni 295 (510)
|||+.- =..++-.+||.+.++|. ..|-......++-++...|.
T Consensus 408 DKMsDi-------------DRvAIHEVMEQqtVTIa--KAGIHasLNARCSVlAAANP 450 (818)
T KOG0479|consen 408 DKMSDI-------------DRVAIHEVMEQQTVTIA--KAGIHASLNARCSVLAAANP 450 (818)
T ss_pred ccccch-------------hHHHHHHHHhcceEEeE--eccchhhhccceeeeeecCc
Confidence 999753 25688999998889887 55544444444444444444
No 259
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.88 E-value=8.6e-05 Score=75.79 Aligned_cols=84 Identities=20% Similarity=0.237 Sum_probs=54.7
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhCC-----------C--eEEEeccccccccccccch-hhHHHHHHHhhchhH-HHh
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVNV-----------P--FTITDATALTQAGYVGEDA-ESVLYKLLAAADFDV-EAA 227 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~~-----------p--~~~~~~s~l~~~gy~G~~~-~~~l~~l~~~~~~~~-~~~ 227 (510)
.+.+||+|+.|+||+++|+.+++.+.. | +..++.. |... -..++.+.+..++.- ...
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~--------g~~i~vd~Ir~l~~~~~~~~~~~~ 89 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF--------DKDLSKSEFLSAINKLYFSSFVQS 89 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC--------CCcCCHHHHHHHHHHhccCCcccC
Confidence 356889999999999999999998711 1 1222200 1110 123445554443221 124
Q ss_pred cCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhC
Q 038067 228 QRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEG 267 (510)
Q Consensus 228 ~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg 267 (510)
..-|++||+++++... .+++||+.||.
T Consensus 90 ~~KvvII~~~e~m~~~-------------a~NaLLK~LEE 116 (299)
T PRK07132 90 QKKILIIKNIEKTSNS-------------LLNALLKTIEE 116 (299)
T ss_pred CceEEEEecccccCHH-------------HHHHHHHHhhC
Confidence 6679999999998754 69999999983
No 260
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=97.87 E-value=5.9e-06 Score=87.27 Aligned_cols=89 Identities=26% Similarity=0.379 Sum_probs=55.2
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhh---------chhHHHhcCcEE
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAA---------DFDVEAAQRGIV 232 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~---------~~~~~~~~~~Vl 232 (510)
..-|++|.|.||+.|+-|.+.+.+..-+.. +.....-+. +| ++.++-+. .+.+-.+.+||-
T Consensus 374 GdINicLmGDPGVAKSQLLkyi~rlapRgv-YTTGrGSSG---VG------LTAAVmkDpvTgEM~LEGGALVLAD~GIC 443 (721)
T KOG0482|consen 374 GDINICLMGDPGVAKSQLLKYISRLAPRGV-YTTGRGSSG---VG------LTAAVMKDPVTGEMVLEGGALVLADGGIC 443 (721)
T ss_pred cceeEEecCCCchhHHHHHHHHHhcCcccc-eecCCCCCc---cc------cchhhhcCCCCCeeEeccceEEEccCceE
Confidence 346999999999999999999998773221 111110000 11 11111111 122234678999
Q ss_pred EEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeec
Q 038067 233 YIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVP 273 (510)
Q Consensus 233 ~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~ 273 (510)
.|||+|||..+. ..++-.+||...+.|.
T Consensus 444 CIDEfDKM~e~D-------------RtAIHEVMEQQTISIa 471 (721)
T KOG0482|consen 444 CIDEFDKMDESD-------------RTAIHEVMEQQTISIA 471 (721)
T ss_pred eehhhhhhhhhh-------------hHHHHHHHHhhhhhhh
Confidence 999999998653 5688889986666554
No 261
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.82 E-value=3.7e-05 Score=75.63 Aligned_cols=67 Identities=24% Similarity=0.333 Sum_probs=48.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhhhh
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIVKA 243 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~~~ 243 (510)
..-.+.||+|||||++.+.+|+.+|.+++.++|++-.+. ..+..++.-. ...++.+++||++++...
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~--------~~l~ril~G~-----~~~GaW~cfdefnrl~~~ 99 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDY--------QSLSRILKGL-----AQSGAWLCFDEFNRLSEE 99 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-H--------HHHHHHHHHH-----HHHT-EEEEETCCCSSHH
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccH--------HHHHHHHHHH-----hhcCchhhhhhhhhhhHH
Confidence 456789999999999999999999999999999987642 2333333221 124689999999998754
No 262
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.81 E-value=1.1e-05 Score=97.11 Aligned_cols=116 Identities=22% Similarity=0.323 Sum_probs=80.5
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccc-cccc----cchhhHHHHHHHhhchhHHHhcCcEEEEcc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQA-GYVG----EDAESVLYKLLAAADFDVEAAQRGIVYIDE 236 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~-gy~G----~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDE 236 (510)
.+..+||.||+++|||.+.+.+|+..+..+++++-.+.++. .|+| .+-+.. .++.....-+...+..+++||
T Consensus 439 ~~~pillqG~tssGKtsii~~la~~~g~~~vrinnhehtd~qeyig~y~~~~~g~l---~freg~LV~Alr~G~~~vlD~ 515 (1856)
T KOG1808|consen 439 GKFPILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQEYIGTYVADDNGDL---VFREGVLVQALRNGDWIVLDE 515 (1856)
T ss_pred CCCCeEEecCcCcCchhHHHHHHHHhccCceehhccccchHHHHHHhhhcCCCCCe---eeehhHHHHHHHhCCEEEecc
Confidence 34589999999999999999999999999999887766532 2333 111110 011111111224678999999
Q ss_pred hhhhhhhccCCCCCCCchhhHHHHHHHHhhC-ceeeeccCCCCCCCCCCCCcEEEEcCCc
Q 038067 237 VDKIVKAESRNNGRDVSGEGVQQALLKMLEG-TVVNVPIPDNGPRKHPRGDNIPIDTKDI 295 (510)
Q Consensus 237 idkl~~~~~~~~~~~~~~~~v~~~LL~~leg-~~~~i~~~~~g~~~~~~~~~i~i~tsni 295 (510)
++..... ++.+|.++++. +.+.+| +..+..+...+++++.|.|.
T Consensus 516 lnla~~d-------------vL~aLnrllddnRel~ip--e~~rlv~~h~~f~lfatqn~ 560 (1856)
T KOG1808|consen 516 LNLAPHD-------------VLEALNRLLDDNRELFIP--ETQRLVKAHPEFMLFATQNP 560 (1856)
T ss_pred ccccchH-------------HHHHHHhhhhhhcccccc--ccceeeccCcchhhhhhccC
Confidence 9986543 89999999984 888877 66666666666666666666
No 263
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.79 E-value=0.00019 Score=71.38 Aligned_cols=93 Identities=14% Similarity=0.132 Sum_probs=55.0
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCC-----CeEEE-eccccc-----cccccccc----hhhHHHHHHHhhchhH-H
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNV-----PFTIT-DATALT-----QAGYVGED----AESVLYKLLAAADFDV-E 225 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~-----p~~~~-~~s~l~-----~~gy~G~~----~~~~l~~l~~~~~~~~-~ 225 (510)
.++.+||+||+|+||..+|.++|+.+-. |.-.+ +|..+. +.-++... ....++++.+...... .
T Consensus 6 ~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~e 85 (261)
T PRK05818 6 KTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSVE 85 (261)
T ss_pred CCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCchh
Confidence 5678999999999999999999988821 11000 011111 00011000 0122334333321111 1
Q ss_pred HhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhC
Q 038067 226 AAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEG 267 (510)
Q Consensus 226 ~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg 267 (510)
.+..-|++||++|+|... ..++||+.||+
T Consensus 86 ~~~~KV~II~~ae~m~~~-------------AaNaLLK~LEE 114 (261)
T PRK05818 86 SNGKKIYIIYGIEKLNKQ-------------SANSLLKLIEE 114 (261)
T ss_pred cCCCEEEEeccHhhhCHH-------------HHHHHHHhhcC
Confidence 234579999999999866 69999999984
No 264
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.78 E-value=0.00021 Score=72.61 Aligned_cols=91 Identities=15% Similarity=0.185 Sum_probs=52.6
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCC-------CeEEE-ecccc-----ccccccccc----hhhHHHHHHHhhchhH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNV-------PFTIT-DATAL-----TQAGYVGED----AESVLYKLLAAADFDV 224 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~-------p~~~~-~~s~l-----~~~gy~G~~----~~~~l~~l~~~~~~~~ 224 (510)
-++.+||+|| +||+++|+.+|+.+.. |.-.+ +|..+ .+.-++..+ .-..++.+.+.....-
T Consensus 23 l~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~p 100 (290)
T PRK07276 23 LNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQSG 100 (290)
T ss_pred cceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhCc
Confidence 4567999996 6899999999998821 11110 01111 010111111 0123444433322111
Q ss_pred HHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhC
Q 038067 225 EAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEG 267 (510)
Q Consensus 225 ~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg 267 (510)
..+...|++||++|+|..+ ..|+||+.||+
T Consensus 101 ~~~~~kV~II~~ad~m~~~-------------AaNaLLKtLEE 130 (290)
T PRK07276 101 YEGKQQVFIIKDADKMHVN-------------AANSLLKVIEE 130 (290)
T ss_pred ccCCcEEEEeehhhhcCHH-------------HHHHHHHHhcC
Confidence 2345679999999999865 69999999984
No 265
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.74 E-value=2.7e-05 Score=67.84 Aligned_cols=31 Identities=42% Similarity=0.707 Sum_probs=27.7
Q ss_pred EEEEccCCChHHHHHHHHHHHhCCCeEEEec
Q 038067 166 VLLMGPTGSGKTLLAKTLARIVNVPFTITDA 196 (510)
Q Consensus 166 vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~ 196 (510)
+++.|||||||||+|+.||+.++.+++.+|.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999887766555
No 266
>PF05729 NACHT: NACHT domain
Probab=97.73 E-value=0.00043 Score=62.96 Aligned_cols=23 Identities=35% Similarity=0.562 Sum_probs=21.4
Q ss_pred eEEEEccCCChHHHHHHHHHHHh
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
.++++|+||+|||++++.++..+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 48999999999999999999877
No 267
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.73 E-value=0.00083 Score=71.08 Aligned_cols=106 Identities=21% Similarity=0.342 Sum_probs=64.5
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
...|+++.||+|||||+++.+++...- .... +|. +....+.++...... .-....+|+|||+..++
T Consensus 208 ~~~Nli~lGp~GTGKThla~~l~~~~a----~~sG------~f~--T~a~Lf~~L~~~~lg--~v~~~DlLI~DEvgylp 273 (449)
T TIGR02688 208 PNYNLIELGPKGTGKSYIYNNLSPYVI----LISG------GTI--TVAKLFYNISTRQIG--LVGRWDVVAFDEVATLK 273 (449)
T ss_pred cCCcEEEECCCCCCHHHHHHHHhHHHH----HHcC------CcC--cHHHHHHHHHHHHHh--hhccCCEEEEEcCCCCc
Confidence 557999999999999999999887620 0000 111 123333333322111 11345699999999876
Q ss_pred hhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCcc
Q 038067 242 KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFV 304 (510)
Q Consensus 242 ~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~ 304 (510)
.... ++..+.|...|+.+.+. .| . ...+++.-+++.||..
T Consensus 274 ~~~~---------~~~v~imK~yMesg~fs-----RG-------~--~~~~a~as~vfvGNi~ 313 (449)
T TIGR02688 274 FAKP---------KELIGILKNYMESGSFT-----RG-------D--ETKSSDASFVFLGNVP 313 (449)
T ss_pred CCch---------HHHHHHHHHHHHhCcee-----cc-------c--eeeeeeeEEEEEcccC
Confidence 4321 23788899999865554 12 1 2245677778888854
No 268
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.58 E-value=7e-05 Score=69.21 Aligned_cols=34 Identities=32% Similarity=0.561 Sum_probs=30.3
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEe
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITD 195 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~ 195 (510)
++.+++|+|+||||||++|+.||+.++.+++..|
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 4568999999999999999999999998887544
No 269
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.56 E-value=0.00018 Score=65.02 Aligned_cols=34 Identities=41% Similarity=0.515 Sum_probs=27.8
Q ss_pred eEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccc
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATA 198 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~ 198 (510)
.++++||||+|||+++..++..+ +.+.+.++...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~ 37 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEE 37 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCc
Confidence 37899999999999999998887 56676666543
No 270
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.53 E-value=0.0018 Score=66.32 Aligned_cols=37 Identities=24% Similarity=0.229 Sum_probs=29.6
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCC------CeEEEeccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNV------PFTITDATA 198 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~------p~~~~~~s~ 198 (510)
.+..+.|.|+=|+|||++.+.+-+.+.. .++.+|+-.
T Consensus 19 ~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~ 61 (325)
T PF07693_consen 19 DPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWE 61 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEcccc
Confidence 5678999999999999999999988843 356666543
No 271
>PRK08118 topology modulation protein; Reviewed
Probab=97.49 E-value=9.7e-05 Score=68.99 Aligned_cols=33 Identities=39% Similarity=0.689 Sum_probs=30.2
Q ss_pred eEEEEccCCChHHHHHHHHHHHhCCCeEEEecc
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIVNVPFTITDAT 197 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s 197 (510)
.++++||||+||||+|+.|++.++.|++.+|.-
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l 35 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDAL 35 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchh
Confidence 599999999999999999999999998887753
No 272
>PRK13947 shikimate kinase; Provisional
Probab=97.47 E-value=0.00011 Score=68.21 Aligned_cols=32 Identities=38% Similarity=0.582 Sum_probs=29.6
Q ss_pred eEEEEccCCChHHHHHHHHHHHhCCCeEEEec
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIVNVPFTITDA 196 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~ 196 (510)
+++|+|+||||||++|+.||+.++.+|+..|.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~ 34 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDK 34 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECch
Confidence 79999999999999999999999999977664
No 273
>PHA00729 NTP-binding motif containing protein
Probab=97.46 E-value=0.0002 Score=69.89 Aligned_cols=25 Identities=40% Similarity=0.505 Sum_probs=23.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhC
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVN 188 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~ 188 (510)
.+++++|+||||||++|.+|++.++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4899999999999999999999875
No 274
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=97.45 E-value=0.019 Score=61.13 Aligned_cols=161 Identities=17% Similarity=0.291 Sum_probs=93.3
Q ss_pred cCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchH
Q 038067 228 QRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLE 307 (510)
Q Consensus 228 ~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~ 307 (510)
++-+|+|||++.+.+-. ++.+++...+.|+++++.. .+| ...++.|+++|+..
T Consensus 239 ~GLlI~lDE~e~l~kl~-----~~~~R~~~ye~lr~lidd~-------~~G------------~~~gL~~~~~gTPe--- 291 (416)
T PF10923_consen 239 KGLLILLDELENLYKLR-----NDQAREKNYEALRQLIDDI-------DQG------------RAPGLYFVFAGTPE--- 291 (416)
T ss_pred CceEEEEechHHHHhcC-----ChHHHHHHHHHHHHHHHHH-------hcC------------CCCceEEEEeeCHH---
Confidence 45699999999887532 3444667899999999731 122 23567777887732
Q ss_pred HHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchh
Q 038067 308 KTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPK 387 (510)
Q Consensus 308 ~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~ 387 (510)
++. +..-|. .+++ .+.+++... ..-.+.|.+-...+|.+.||+.+++..++.+
T Consensus 292 -f~e----D~rrGv------------~sY~----AL~~RL~~~----~~~~~~~~n~~~pvIrL~~l~~eel~~l~~k-- 344 (416)
T PF10923_consen 292 -FFE----DGRRGV------------YSYE----ALAQRLAEE----FFADDGFDNLRAPVIRLQPLTPEELLELLEK-- 344 (416)
T ss_pred -Hhh----Cccccc------------cccH----HHHHHHhcc----ccccccccCccCceecCCCCCHHHHHHHHHH--
Confidence 110 011110 1111 222222111 1113566777777899999999999988874
Q ss_pred HHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCCh--hHHHHHHHH--HHHHHHhcCcCC
Q 038067 388 NALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGA--RGLRALLEN--ILTEAMFEIPET 447 (510)
Q Consensus 388 ~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~ga--R~L~~~ie~--~l~~~l~~~~~~ 447 (510)
+..-|.. ..+....++++.+..+++..+..-++. +.-|..|.. -+++.+.+.|+.
T Consensus 345 --lr~i~a~---~~~~~~~v~d~~l~~~~~~~~~r~G~~~~~tPR~~ik~fv~~Ld~~~q~p~~ 403 (416)
T PF10923_consen 345 --LRDIYAE---AYGYESRVDDEELKAFAQHVAGRLGGDVFVTPREFIKDFVDVLDILEQNPDF 403 (416)
T ss_pred --HHHHHHh---hCCCCCCCCHHHHHHHHHHHHhccCcccccCHHHHHHHHHHHHHHHHHCCCC
Confidence 3333332 235557899999999998865543332 222333333 345666666665
No 275
>PRK00625 shikimate kinase; Provisional
Probab=97.44 E-value=0.00013 Score=68.62 Aligned_cols=32 Identities=38% Similarity=0.602 Sum_probs=29.4
Q ss_pred eEEEEccCCChHHHHHHHHHHHhCCCeEEEec
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIVNVPFTITDA 196 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~ 196 (510)
+++|+|+||+|||++++.+|+.++.+++.+|.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~ 33 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDD 33 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhH
Confidence 69999999999999999999999999877663
No 276
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.43 E-value=0.00011 Score=68.59 Aligned_cols=33 Identities=39% Similarity=0.739 Sum_probs=30.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhCCCeEEEec
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVNVPFTITDA 196 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~ 196 (510)
.+++|+|++|+|||++.+.||+.|+.||+..|.
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~ 35 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQ 35 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchH
Confidence 579999999999999999999999999987765
No 277
>PRK07261 topology modulation protein; Provisional
Probab=97.42 E-value=0.00034 Score=65.50 Aligned_cols=43 Identities=28% Similarity=0.495 Sum_probs=34.6
Q ss_pred eEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccc
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGED 208 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~ 208 (510)
.++++|+||+||||+|+.|++.++.|++..|.-... ++|...+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~-~~~~~~~ 44 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQ-PNWQERD 44 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEec-cccccCC
Confidence 489999999999999999999999998888765443 3454443
No 278
>PRK03839 putative kinase; Provisional
Probab=97.40 E-value=0.00015 Score=68.19 Aligned_cols=31 Identities=26% Similarity=0.375 Sum_probs=28.3
Q ss_pred eEEEEccCCChHHHHHHHHHHHhCCCeEEEe
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIVNVPFTITD 195 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~ 195 (510)
.++|+|+||+||||+++.||+.++.+++.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 4899999999999999999999999886655
No 279
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.37 E-value=0.0005 Score=66.72 Aligned_cols=80 Identities=21% Similarity=0.304 Sum_probs=50.6
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh--------CCCeEEEeccccccccccccchhhH--HHHHHHh---h---chhHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV--------NVPFTITDATALTQAGYVGEDAESV--LYKLLAA---A---DFDVE 225 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l--------~~p~~~~~~s~l~~~gy~G~~~~~~--l~~l~~~---~---~~~~~ 225 (510)
.+.|.|+.||||||||++.|-+|+.+ ...+..+|-..-...+..|...-+. -.+.... + -..++
T Consensus 136 g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIr 215 (308)
T COG3854 136 GWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIR 215 (308)
T ss_pred CceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHH
Confidence 67899999999999999999999887 2356677765544333333321110 0000000 0 11345
Q ss_pred HhcCcEEEEcchhhhh
Q 038067 226 AAQRGIVYIDEVDKIV 241 (510)
Q Consensus 226 ~~~~~Vl~iDEidkl~ 241 (510)
...+-|+++|||....
T Consensus 216 sm~PEViIvDEIGt~~ 231 (308)
T COG3854 216 SMSPEVIIVDEIGTEE 231 (308)
T ss_pred hcCCcEEEEeccccHH
Confidence 6678899999999843
No 280
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.37 E-value=0.00021 Score=74.82 Aligned_cols=27 Identities=30% Similarity=0.507 Sum_probs=24.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhC
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVN 188 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~ 188 (510)
++++++|+||+|+|||+|.-.+...+.
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp 87 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLP 87 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCC
Confidence 678999999999999999999998883
No 281
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.37 E-value=0.00029 Score=65.94 Aligned_cols=23 Identities=35% Similarity=0.667 Sum_probs=20.7
Q ss_pred eEEEEccCCChHHHHHHHHHHHh
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
+++|+|+||+||||+++.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 58999999999999999999888
No 282
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.35 E-value=0.00019 Score=65.07 Aligned_cols=31 Identities=39% Similarity=0.728 Sum_probs=28.1
Q ss_pred eEEEEccCCChHHHHHHHHHHHhCCCeEEEe
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIVNVPFTITD 195 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~ 195 (510)
+++|+|+||+|||++|+.||+.++.+++..|
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4899999999999999999999998887655
No 283
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.32 E-value=0.00059 Score=67.91 Aligned_cols=28 Identities=25% Similarity=0.445 Sum_probs=24.5
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCC
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNV 189 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~ 189 (510)
.+..++++||+|+|||++++.+++.+..
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 4467999999999999999999988743
No 284
>PRK13948 shikimate kinase; Provisional
Probab=97.30 E-value=0.00026 Score=67.16 Aligned_cols=34 Identities=32% Similarity=0.388 Sum_probs=31.7
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEe
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITD 195 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~ 195 (510)
++.+++|+|++|+|||++++.||+.++.+|+..|
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 6689999999999999999999999999998666
No 285
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.30 E-value=0.0099 Score=58.74 Aligned_cols=68 Identities=28% Similarity=0.318 Sum_probs=46.0
Q ss_pred hhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHH
Q 038067 360 EFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTE 439 (510)
Q Consensus 360 efl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~ 439 (510)
+|..|++..+.++|++.++....++..+ + ....-.-.++++++.+|.... |++-++|..++..
T Consensus 186 e~~~R~~ir~~l~P~~~~~t~~yl~~~L----e------~a~~~~~l~~~~a~~~i~~~s-------qg~P~lin~~~~~ 248 (269)
T COG3267 186 ELEQRIDIRIELPPLTEAETGLYLRHRL----E------GAGLPEPLFSDDALLLIHEAS-------QGIPRLINNLATL 248 (269)
T ss_pred hhhheEEEEEecCCcChHHHHHHHHHHH----h------ccCCCcccCChhHHHHHHHHh-------ccchHHHHHHHHH
Confidence 6778999978999999998877776421 1 112233448999999999874 2355666666655
Q ss_pred HHhcC
Q 038067 440 AMFEI 444 (510)
Q Consensus 440 ~l~~~ 444 (510)
++-.+
T Consensus 249 Al~~a 253 (269)
T COG3267 249 ALDAA 253 (269)
T ss_pred HHHHH
Confidence 55443
No 286
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.30 E-value=0.0002 Score=64.91 Aligned_cols=37 Identities=32% Similarity=0.623 Sum_probs=31.0
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALT 200 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~ 200 (510)
.+.|+|++|-||||||++|..||+.++.+++ +++++.
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~~~~~i--~isd~v 42 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAEKTGLEYI--EISDLV 42 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHHHhCCceE--ehhhHH
Confidence 5579999999999999999999999987765 445554
No 287
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.28 E-value=0.0056 Score=66.12 Aligned_cols=34 Identities=26% Similarity=0.409 Sum_probs=29.4
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEe
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITD 195 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~ 195 (510)
..+-+||+||+|||||++.+.|++++|..+..-.
T Consensus 109 ~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970|consen 109 GSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred CceEEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence 4467999999999999999999999988776544
No 288
>PRK06217 hypothetical protein; Validated
Probab=97.27 E-value=0.00025 Score=66.95 Aligned_cols=32 Identities=34% Similarity=0.566 Sum_probs=29.1
Q ss_pred eEEEEccCCChHHHHHHHHHHHhCCCeEEEec
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIVNVPFTITDA 196 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~ 196 (510)
.|+|.|+||+|||++|+.|++.++.|++..|.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~ 34 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTDD 34 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcCc
Confidence 59999999999999999999999998877664
No 289
>PRK13949 shikimate kinase; Provisional
Probab=97.25 E-value=0.00026 Score=66.24 Aligned_cols=33 Identities=39% Similarity=0.591 Sum_probs=29.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhCCCeEEEec
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVNVPFTITDA 196 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~ 196 (510)
.+++|+||||+|||++++.||+.++.+++..|.
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~ 34 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDF 34 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeecccH
Confidence 369999999999999999999999999887773
No 290
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.24 E-value=0.0034 Score=65.00 Aligned_cols=26 Identities=46% Similarity=0.712 Sum_probs=23.7
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
.+.-++|.||+|+|||++++.|.+.+
T Consensus 87 ~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 87 RKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999999888
No 291
>PRK14532 adenylate kinase; Provisional
Probab=97.22 E-value=0.00029 Score=66.59 Aligned_cols=29 Identities=31% Similarity=0.408 Sum_probs=25.7
Q ss_pred eEEEEccCCChHHHHHHHHHHHhCCCeEE
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIVNVPFTI 193 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l~~p~~~ 193 (510)
+++|+||||+|||++|+.||+.++.+++.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is 30 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLS 30 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 59999999999999999999999866543
No 292
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.21 E-value=0.0017 Score=59.91 Aligned_cols=26 Identities=27% Similarity=0.438 Sum_probs=23.7
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
....++++|+||+|||+++..+++.+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHH
Confidence 34689999999999999999999888
No 293
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.20 E-value=0.00058 Score=66.64 Aligned_cols=23 Identities=35% Similarity=0.418 Sum_probs=20.8
Q ss_pred cCceEEEEccCCChHHHHHHHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLA 184 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA 184 (510)
.+..+||||+||+|||++|+.++
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcC
Confidence 45679999999999999999987
No 294
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.19 E-value=0.0011 Score=61.23 Aligned_cols=37 Identities=35% Similarity=0.501 Sum_probs=32.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccc
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALT 200 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~ 200 (510)
..++|+|.||+|||++|++|.+.| +.+.+.+|...+.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR 42 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLR 42 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchh
Confidence 469999999999999999999988 7899999988776
No 295
>PRK14530 adenylate kinase; Provisional
Probab=97.19 E-value=0.00038 Score=67.45 Aligned_cols=31 Identities=32% Similarity=0.497 Sum_probs=27.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhCCCeEEE
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVNVPFTIT 194 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~ 194 (510)
.+++|+||||+|||++|+.||+.++.+++..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 4799999999999999999999998776533
No 296
>PHA02774 E1; Provisional
Probab=97.19 E-value=0.0024 Score=69.96 Aligned_cols=78 Identities=18% Similarity=0.345 Sum_probs=51.3
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhCCCeE-EEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVNVPFT-ITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~-~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
+.+++|+||||||||++|-+|++.++...+ .++... .-| +..+. ..-|++|||+..-.
T Consensus 434 knciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s---~Fw--------Lqpl~----------d~ki~vlDD~t~~~ 492 (613)
T PHA02774 434 KNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKS---HFW--------LQPLA----------DAKIALLDDATHPC 492 (613)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECcc---ccc--------cchhc----------cCCEEEEecCcchH
Confidence 468999999999999999999999954443 344321 101 11121 22599999993321
Q ss_pred hhccCCCCCCCchhhHHHHHHHHhhCceeeec
Q 038067 242 KAESRNNGRDVSGEGVQQALLKMLEGTVVNVP 273 (510)
Q Consensus 242 ~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~ 273 (510)
-. -+...|..+|+|..+.|.
T Consensus 493 w~------------y~d~~Lrn~LdG~~v~lD 512 (613)
T PHA02774 493 WD------------YIDTYLRNALDGNPVSID 512 (613)
T ss_pred HH------------HHHHHHHHHcCCCcceee
Confidence 11 146678899998877664
No 297
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.18 E-value=0.00023 Score=63.73 Aligned_cols=31 Identities=39% Similarity=0.655 Sum_probs=25.4
Q ss_pred EEEEccCCChHHHHHHHHHHHhCCCeEEEeccc
Q 038067 166 VLLMGPTGSGKTLLAKTLARIVNVPFTITDATA 198 (510)
Q Consensus 166 vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~ 198 (510)
++++||||+|||++|+.+++.++ ...++...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~ 32 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDE 32 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHH
Confidence 79999999999999999999997 33444433
No 298
>PRK13946 shikimate kinase; Provisional
Probab=97.17 E-value=0.00035 Score=66.08 Aligned_cols=35 Identities=34% Similarity=0.646 Sum_probs=32.0
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEec
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDA 196 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~ 196 (510)
.+.+|+|+|++|||||++++.||+.++.||+..|.
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~ 43 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT 43 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCH
Confidence 55789999999999999999999999999887774
No 299
>PRK06762 hypothetical protein; Provisional
Probab=97.15 E-value=0.00068 Score=62.66 Aligned_cols=37 Identities=24% Similarity=0.385 Sum_probs=30.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccc
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALT 200 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~ 200 (510)
.-++|+|+||+|||++|+.|++.++..++.++...+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r 39 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVR 39 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHH
Confidence 4689999999999999999999996566666655443
No 300
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.15 E-value=0.0011 Score=69.52 Aligned_cols=82 Identities=18% Similarity=0.307 Sum_probs=47.7
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCC-----CeEEEecccc---------------ccccccccchhhHHH---HHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNV-----PFTITDATAL---------------TQAGYVGEDAESVLY---KLLA 218 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~-----p~~~~~~s~l---------------~~~gy~G~~~~~~l~---~l~~ 218 (510)
.+...+++||+|+|||+|++.|++.... ..+.+-..+. ..+.+ -......+. ..+.
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~-d~~~~~~~~~a~~~ie 246 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTF-DEPAERHVQVAEMVIE 246 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECC-CCCHHHHHHHHHHHHH
Confidence 3456899999999999999999987732 2222222221 00000 111122222 2333
Q ss_pred hhchhHHHhcCcEEEEcchhhhhhhc
Q 038067 219 AADFDVEAAQRGIVYIDEVDKIVKAE 244 (510)
Q Consensus 219 ~~~~~~~~~~~~Vl~iDEidkl~~~~ 244 (510)
.+.+........+||||||+++..+.
T Consensus 247 ~Ae~~~e~G~dVlL~iDsItR~arAq 272 (416)
T PRK09376 247 KAKRLVEHGKDVVILLDSITRLARAY 272 (416)
T ss_pred HHHHHHHcCCCEEEEEEChHHHHHHH
Confidence 34443444567799999999998654
No 301
>PRK14531 adenylate kinase; Provisional
Probab=97.14 E-value=0.00046 Score=65.18 Aligned_cols=30 Identities=27% Similarity=0.444 Sum_probs=26.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhCCCeEE
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVNVPFTI 193 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~ 193 (510)
..++++||||+|||++++.||+.+|.+++.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is 32 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLS 32 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEe
Confidence 469999999999999999999999877644
No 302
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.14 E-value=0.00045 Score=75.50 Aligned_cols=35 Identities=37% Similarity=0.677 Sum_probs=28.3
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh-CCCeEEEec
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV-NVPFTITDA 196 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l-~~p~~~~~~ 196 (510)
.+..++|.||||+|||+||+.||+.+ ..|+..+..
T Consensus 102 ~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 102 KKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred CCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 34579999999999999999999988 346655543
No 303
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.12 E-value=0.00049 Score=63.90 Aligned_cols=33 Identities=33% Similarity=0.527 Sum_probs=29.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhCCCeEEEec
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVNVPFTITDA 196 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~ 196 (510)
.+++|+|++|+|||++++.||+.++.|++..|.
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~ 35 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQ 35 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccH
Confidence 469999999999999999999999999876654
No 304
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.12 E-value=0.0051 Score=59.18 Aligned_cols=38 Identities=21% Similarity=0.293 Sum_probs=29.5
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhC-CCeEEEecccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVN-VPFTITDATAL 199 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~-~p~~~~~~s~l 199 (510)
.+..+.+.|+|||||||+++.|++.++ ..+..++...+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~ 43 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSY 43 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCcc
Confidence 446799999999999999999999983 34445555444
No 305
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.11 E-value=0.0029 Score=67.29 Aligned_cols=69 Identities=19% Similarity=0.326 Sum_probs=43.2
Q ss_pred eEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
.++++||.+||||++++.+.+.+....+.++..+...... .....+....... ......||||||+.+.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~---~l~d~~~~~~~~~-----~~~~~yifLDEIq~v~ 107 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRI---ELLDLLRAYIELK-----EREKSYIFLDEIQNVP 107 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchh---hHHHHHHHHHHhh-----ccCCceEEEecccCch
Confidence 7999999999999999999988855566666555442211 1011111111111 0144699999999864
No 306
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.11 E-value=0.00051 Score=64.39 Aligned_cols=34 Identities=38% Similarity=0.733 Sum_probs=31.0
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhCCCeEEEec
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDA 196 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~ 196 (510)
+.+++|+||+|+|||++++.+|+.++.+++..|.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 4579999999999999999999999999887775
No 307
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.00098 Score=72.79 Aligned_cols=97 Identities=35% Similarity=0.556 Sum_probs=71.6
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
++.+++++||||+|||++++.++.. +..+..++..... ..|.|.. ...+...+..+ ....++++++||++.+.
T Consensus 17 ~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~a----~~~~~~ii~~d~~~~~~ 89 (494)
T COG0464 17 PPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEIL-SKYVGES-ELRLRELFEEA----EKLAPSIIFIDEIDALA 89 (494)
T ss_pred CCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhh-hhhhhHH-HHHHHHHHHHH----HHhCCCeEeechhhhcc
Confidence 7789999999999999999999998 6655556666555 3477765 44555666554 34455999999999998
Q ss_pred hhccCCCCCCCchhhHHHHHHHHhhC
Q 038067 242 KAESRNNGRDVSGEGVQQALLKMLEG 267 (510)
Q Consensus 242 ~~~~~~~~~~~~~~~v~~~LL~~leg 267 (510)
+.+.. ........+...|+..+++
T Consensus 90 ~~~~~--~~~~~~~~v~~~l~~~~d~ 113 (494)
T COG0464 90 PKRSS--DQGEVERRVVAQLLALMDG 113 (494)
T ss_pred cCccc--cccchhhHHHHHHHHhccc
Confidence 76544 3333445688899999874
No 308
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.09 E-value=0.0028 Score=59.33 Aligned_cols=32 Identities=28% Similarity=0.268 Sum_probs=25.9
Q ss_pred EEEEccCCChHHHHHHHHHHHh---CCCeEEEecc
Q 038067 166 VLLMGPTGSGKTLLAKTLARIV---NVPFTITDAT 197 (510)
Q Consensus 166 vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s 197 (510)
++++||||||||+++..++... |.+.++++..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e 36 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE 36 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 7999999999999998876654 6677777654
No 309
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.08 E-value=0.00048 Score=64.61 Aligned_cols=33 Identities=27% Similarity=0.347 Sum_probs=27.3
Q ss_pred EEEEccCCChHHHHHHHHHHHhCCCeEEEeccccc
Q 038067 166 VLLMGPTGSGKTLLAKTLARIVNVPFTITDATALT 200 (510)
Q Consensus 166 vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~ 200 (510)
++++||||||||++|+.||+.++. ..++++++.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~--~~is~~d~l 34 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGF--THLSAGDLL 34 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC--eEEECChHH
Confidence 799999999999999999999975 455555543
No 310
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.07 E-value=0.00051 Score=61.58 Aligned_cols=30 Identities=40% Similarity=0.696 Sum_probs=28.0
Q ss_pred EEEEccCCChHHHHHHHHHHHhCCCeEEEe
Q 038067 166 VLLMGPTGSGKTLLAKTLARIVNVPFTITD 195 (510)
Q Consensus 166 vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~ 195 (510)
+++.|+||||||++|+.||+.++.|++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 789999999999999999999999987776
No 311
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.06 E-value=0.00049 Score=64.45 Aligned_cols=36 Identities=19% Similarity=0.422 Sum_probs=30.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhCCCeEEEecccc
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATAL 199 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l 199 (510)
..++|.|+||+|||++|+.|++.++.+++.++...+
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~ 38 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSF 38 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHH
Confidence 469999999999999999999999877776554433
No 312
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.05 E-value=0.00051 Score=64.82 Aligned_cols=30 Identities=43% Similarity=0.691 Sum_probs=25.9
Q ss_pred eEEEEccCCChHHHHHHHHHHHhCCCeEEE
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIVNVPFTIT 194 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~ 194 (510)
+|+++||||+|||++|+.||+.++.+++.+
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 389999999999999999999997665443
No 313
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.03 E-value=0.0054 Score=63.64 Aligned_cols=38 Identities=29% Similarity=0.367 Sum_probs=34.5
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEecccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATAL 199 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l 199 (510)
-|+++.++|-+|||||.+.+++-+.++.|.+.+++-+.
T Consensus 29 ~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ec 66 (438)
T KOG2543|consen 29 IPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVEC 66 (438)
T ss_pred cceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHh
Confidence 56889999999999999999999999999999987653
No 314
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.03 E-value=0.00055 Score=62.10 Aligned_cols=28 Identities=39% Similarity=0.704 Sum_probs=24.9
Q ss_pred EEEEccCCChHHHHHHHHHHHhCCCeEE
Q 038067 166 VLLMGPTGSGKTLLAKTLARIVNVPFTI 193 (510)
Q Consensus 166 vLL~GPpGtGKT~lAr~lA~~l~~p~~~ 193 (510)
++|+|+||+|||++|+.+++.++.+++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 7899999999999999999998776553
No 315
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.02 E-value=0.00064 Score=66.85 Aligned_cols=33 Identities=24% Similarity=0.389 Sum_probs=28.5
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhCCCeEEEe
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVNVPFTITD 195 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~ 195 (510)
+..++|+||||+|||++|+.||+.++.+++.++
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 356999999999999999999999987766544
No 316
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.02 E-value=0.0017 Score=68.41 Aligned_cols=27 Identities=26% Similarity=0.518 Sum_probs=24.1
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhC
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVN 188 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~ 188 (510)
.+..++++||||+|||++++.+++.+.
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 556799999999999999999999874
No 317
>PRK14974 cell division protein FtsY; Provisional
Probab=97.02 E-value=0.0026 Score=66.01 Aligned_cols=38 Identities=21% Similarity=0.370 Sum_probs=29.6
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEecccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATAL 199 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l 199 (510)
.+..++|+||+|+|||+++..+|..+ +..+..+++..+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~ 179 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTF 179 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcC
Confidence 35789999999999999999998877 455655655433
No 318
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.99 E-value=0.00054 Score=63.11 Aligned_cols=27 Identities=41% Similarity=0.655 Sum_probs=24.1
Q ss_pred EEEEccCCChHHHHHHHHHHHhCCCeE
Q 038067 166 VLLMGPTGSGKTLLAKTLARIVNVPFT 192 (510)
Q Consensus 166 vLL~GPpGtGKT~lAr~lA~~l~~p~~ 192 (510)
+++.||+|+|||++|+.|++.++.+++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v 27 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI 27 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 478999999999999999999986654
No 319
>PRK10536 hypothetical protein; Provisional
Probab=96.98 E-value=0.0086 Score=59.67 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHH
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~ 186 (510)
..++++||+|||||+||.+++..
T Consensus 75 ~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 75 QLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999874
No 320
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.96 E-value=0.0029 Score=59.24 Aligned_cols=74 Identities=19% Similarity=0.282 Sum_probs=48.3
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccccc--cccccchhhHHHHHHHhhchhHHHhcCcEEEEc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALTQA--GYVGEDAESVLYKLLAAADFDVEAAQRGIVYID 235 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~~~--gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iD 235 (510)
.+..+.|+|.||+|||++|.+|.+.| |.....+|...+... .-.|.+.+....+..+-+...-..+..|+|.|=
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~eniRRvaevAkll~daG~iviv 100 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIENIRRVAEVAKLLADAGLIVIV 100 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHCCeEEEE
Confidence 44689999999999999999999988 889999998877521 012333344444443333222223455666654
No 321
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.95 E-value=0.0033 Score=60.24 Aligned_cols=89 Identities=21% Similarity=0.274 Sum_probs=48.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHHh---CCCeEEEecccccccc---ccccchhhHHHHHHHhhchh-H----HHhcCcEE
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALTQAG---YVGEDAESVLYKLLAAADFD-V----EAAQRGIV 232 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~~~g---y~G~~~~~~l~~l~~~~~~~-~----~~~~~~Vl 232 (510)
+..++.||||||||++++.+.+.+ +..++.+..+.-.... -.|.. ...+..++...... . ......+|
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~-a~Ti~~~l~~~~~~~~~~~~~~~~~~vl 97 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIE-AQTIHSFLYRIPNGDDEGRPELPKKDVL 97 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS--EEEHHHHTTEECCEECCSSCC-TSTSEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcc-hhhHHHHHhcCCcccccccccCCcccEE
Confidence 468889999999999999998877 5566666554322100 00000 11122222111110 0 02345799
Q ss_pred EEcchhhhhhhccCCCCCCCchhhHHHHHHHHhh
Q 038067 233 YIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLE 266 (510)
Q Consensus 233 ~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~le 266 (510)
+|||+..+... ....|+....
T Consensus 98 iVDEasmv~~~-------------~~~~ll~~~~ 118 (196)
T PF13604_consen 98 IVDEASMVDSR-------------QLARLLRLAK 118 (196)
T ss_dssp EESSGGG-BHH-------------HHHHHHHHS-
T ss_pred EEecccccCHH-------------HHHHHHHHHH
Confidence 99999987654 4666777664
No 322
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.95 E-value=0.0012 Score=67.89 Aligned_cols=34 Identities=32% Similarity=0.606 Sum_probs=31.2
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEe
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITD 195 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~ 195 (510)
++.+++|+|++|||||++++.||+.++.||+.+|
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 6678999999999999999999999999999655
No 323
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.95 E-value=0.003 Score=57.72 Aligned_cols=35 Identities=29% Similarity=0.529 Sum_probs=29.0
Q ss_pred EEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccc
Q 038067 166 VLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALT 200 (510)
Q Consensus 166 vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~ 200 (510)
+++.|+||+|||++|+.|++.+ +.+.+.++...+.
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r 39 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVR 39 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHH
Confidence 7899999999999999999998 6666777655443
No 324
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.93 E-value=0.002 Score=61.90 Aligned_cols=37 Identities=27% Similarity=0.335 Sum_probs=30.7
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATA 198 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~ 198 (510)
...-++++||||+|||++|..++... +.+.++++...
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 45679999999999999999988654 66788888865
No 325
>PHA02624 large T antigen; Provisional
Probab=96.92 E-value=0.0014 Score=72.05 Aligned_cols=89 Identities=24% Similarity=0.250 Sum_probs=53.8
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
.++.++|+||||||||+++.+|.+.++...+.+++..-...-| +.-+. ..-+++||++..-.
T Consensus 430 Kk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~Fw--------L~pl~----------D~~~~l~dD~t~~~ 491 (647)
T PHA02624 430 KRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLNFE--------LGCAI----------DQFMVVFEDVKGQP 491 (647)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhHHH--------hhhhh----------hceEEEeeeccccc
Confidence 4468999999999999999999999965555566433221101 11111 23589999987533
Q ss_pred hhccCCCCCCCchhhH--HHHHHHHhhCc-eeee
Q 038067 242 KAESRNNGRDVSGEGV--QQALLKMLEGT-VVNV 272 (510)
Q Consensus 242 ~~~~~~~~~~~~~~~v--~~~LL~~leg~-~~~i 272 (510)
-.... . -+|..+ .+-|...|||. .+.+
T Consensus 492 ~~~~~-L---p~G~~~dNl~~lRn~LDG~V~v~l 521 (647)
T PHA02624 492 ADNKD-L---PSGQGMNNLDNLRDYLDGSVPVNL 521 (647)
T ss_pred ccccc-C---CcccccchhhHHHhhcCCCCcccc
Confidence 21100 0 001112 47888899986 5544
No 326
>PRK06547 hypothetical protein; Provisional
Probab=96.92 E-value=0.00089 Score=62.89 Aligned_cols=34 Identities=38% Similarity=0.428 Sum_probs=28.8
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEe
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITD 195 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~ 195 (510)
.+..+++.|++|+|||++|+.|++.++.+++..|
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 4467888899999999999999999987766544
No 327
>PRK14528 adenylate kinase; Provisional
Probab=96.91 E-value=0.00093 Score=63.42 Aligned_cols=30 Identities=37% Similarity=0.665 Sum_probs=26.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhCCCeEE
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVNVPFTI 193 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~ 193 (510)
.++++.||||+|||++|+.|++.++.+++.
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is 31 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIS 31 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 369999999999999999999999877654
No 328
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.85 E-value=0.00094 Score=61.51 Aligned_cols=29 Identities=31% Similarity=0.463 Sum_probs=25.9
Q ss_pred eEEEEccCCChHHHHHHHHHHHhCCCeEE
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIVNVPFTI 193 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l~~p~~~ 193 (510)
.+-+.|||||||||+|+.||+.+|.+++.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCceee
Confidence 37789999999999999999999988753
No 329
>PRK04296 thymidine kinase; Provisional
Probab=96.85 E-value=0.0051 Score=58.60 Aligned_cols=31 Identities=16% Similarity=0.095 Sum_probs=24.3
Q ss_pred eEEEEccCCChHHHHHHHHHHHh---CCCeEEEe
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIV---NVPFTITD 195 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~ 195 (510)
-.+++||+|+|||+++..++..+ +..++.+.
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k 37 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK 37 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 58999999999999998887665 55555553
No 330
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.84 E-value=0.0011 Score=62.59 Aligned_cols=33 Identities=36% Similarity=0.697 Sum_probs=26.6
Q ss_pred eEEEEccCCChHHHHHHHHHHHhCCCeEEEecccc
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIVNVPFTITDATAL 199 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l 199 (510)
.+++.||||+||||+|+.||+.++. ..+|..++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i--~hlstgd~ 34 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGL--PHLDTGDI 34 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC--cEEcHhHH
Confidence 5899999999999999999999654 44554443
No 331
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.83 E-value=0.0048 Score=60.79 Aligned_cols=26 Identities=31% Similarity=0.599 Sum_probs=22.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
.+.-+.+.||||||||||.+.+|...
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44569999999999999999999776
No 332
>PTZ00301 uridine kinase; Provisional
Probab=96.82 E-value=0.0051 Score=59.67 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=21.1
Q ss_pred eEEEEccCCChHHHHHHHHHHHh
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
-|.+.||||+||||+|+.|++.+
T Consensus 5 iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 5 VIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred EEEEECCCcCCHHHHHHHHHHHH
Confidence 58899999999999999998876
No 333
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.81 E-value=0.0073 Score=58.12 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=23.7
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhC
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVN 188 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~ 188 (510)
.+..+.+.||+|+||||++++|+..+.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345688999999999999999999885
No 334
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.80 E-value=0.0065 Score=59.53 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=28.5
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEecc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDAT 197 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s 197 (510)
.++.++++||||+|||+++..++... +.+.++++..
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e 62 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE 62 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 45679999999999999999986543 6677776654
No 335
>PRK02496 adk adenylate kinase; Provisional
Probab=96.79 E-value=0.0013 Score=62.03 Aligned_cols=30 Identities=33% Similarity=0.628 Sum_probs=26.1
Q ss_pred eEEEEccCCChHHHHHHHHHHHhCCCeEEE
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIVNVPFTIT 194 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~ 194 (510)
.+++.||||+|||++|+.||+.++.+.+..
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 589999999999999999999998765443
No 336
>PF14516 AAA_35: AAA-like domain
Probab=96.78 E-value=0.034 Score=57.71 Aligned_cols=39 Identities=23% Similarity=0.197 Sum_probs=33.0
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALT 200 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~ 200 (510)
++..+.+.||..+|||++...+.+.+ +...+.+|+..+-
T Consensus 30 ~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~ 71 (331)
T PF14516_consen 30 PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLG 71 (331)
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCC
Confidence 56789999999999999998887766 6788888887653
No 337
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.75 E-value=0.0014 Score=61.33 Aligned_cols=29 Identities=17% Similarity=0.319 Sum_probs=25.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhCCCeE
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVNVPFT 192 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~~p~~ 192 (510)
.-+++.||||+|||++|+.|++.+|.+.+
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~~ 32 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHL 32 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 46899999999999999999999876543
No 338
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.73 E-value=0.0058 Score=58.65 Aligned_cols=37 Identities=30% Similarity=0.410 Sum_probs=26.3
Q ss_pred CceEEEEccCCChHHHHHHHHHHHh---CCCeEEEecccc
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATAL 199 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l 199 (510)
|..++|+||+|+|||+.+-.||..+ +..+..+.+..+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~ 40 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTY 40 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTS
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCC
Confidence 4579999999999999888887666 555555554443
No 339
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.72 E-value=0.0013 Score=63.38 Aligned_cols=29 Identities=41% Similarity=0.654 Sum_probs=25.8
Q ss_pred EEEEccCCChHHHHHHHHHHHhCCCeEEE
Q 038067 166 VLLMGPTGSGKTLLAKTLARIVNVPFTIT 194 (510)
Q Consensus 166 vLL~GPpGtGKT~lAr~lA~~l~~p~~~~ 194 (510)
++++||||+|||++|+.||+.++.+++..
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 89999999999999999999998766553
No 340
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.72 E-value=0.0059 Score=65.56 Aligned_cols=39 Identities=31% Similarity=0.463 Sum_probs=32.4
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALT 200 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~ 200 (510)
.+..++|+|++|+|||+++..||..+ +..+..+++..+.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R 135 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYR 135 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCC
Confidence 57889999999999999999999877 5677777776543
No 341
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.71 E-value=0.0013 Score=57.21 Aligned_cols=22 Identities=45% Similarity=0.584 Sum_probs=20.9
Q ss_pred EEEEccCCChHHHHHHHHHHHh
Q 038067 166 VLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 166 vLL~GPpGtGKT~lAr~lA~~l 187 (510)
|+|.|+|||||||+|+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999997
No 342
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.71 E-value=0.0037 Score=59.91 Aligned_cols=25 Identities=40% Similarity=0.628 Sum_probs=22.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhC
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVN 188 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~ 188 (510)
+-+++.||+|+|||+++++++..+.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3589999999999999999988874
No 343
>PLN02200 adenylate kinase family protein
Probab=96.70 E-value=0.0016 Score=64.18 Aligned_cols=37 Identities=19% Similarity=0.229 Sum_probs=30.4
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALT 200 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~ 200 (510)
.+..+++.||||+|||++|+.||+.++.+ .++++++.
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdll 78 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLL 78 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHH
Confidence 45679999999999999999999999764 46665554
No 344
>PLN02199 shikimate kinase
Probab=96.70 E-value=0.0017 Score=65.91 Aligned_cols=35 Identities=29% Similarity=0.496 Sum_probs=31.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEec
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDA 196 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~ 196 (510)
...+|+|+|.+|+|||++++.||+.++.+|+..|.
T Consensus 101 ~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~ 135 (303)
T PLN02199 101 NGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDT 135 (303)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHH
Confidence 56799999999999999999999999999887764
No 345
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.69 E-value=0.013 Score=56.86 Aligned_cols=27 Identities=37% Similarity=0.476 Sum_probs=24.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhCCC
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVNVP 190 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~~p 190 (510)
.-+-+.|+||+|||++|+.|+..++.+
T Consensus 9 iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 9 IIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 458899999999999999999999755
No 346
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.69 E-value=0.0013 Score=61.22 Aligned_cols=30 Identities=23% Similarity=0.308 Sum_probs=26.5
Q ss_pred eEEEEccCCChHHHHHHHHHHHhCCCeEEEe
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIVNVPFTITD 195 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~ 195 (510)
.++++|.||||||++|+.|+ .+|.+.+.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 58999999999999999999 8888776655
No 347
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.66 E-value=0.0018 Score=62.70 Aligned_cols=29 Identities=34% Similarity=0.620 Sum_probs=25.9
Q ss_pred eEEEEccCCChHHHHHHHHHHHhCCCeEE
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIVNVPFTI 193 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l~~p~~~ 193 (510)
.++++||||+|||++|+.||+.++.+++.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is 30 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIS 30 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 48999999999999999999999866554
No 348
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=96.66 E-value=0.0079 Score=66.81 Aligned_cols=38 Identities=29% Similarity=0.468 Sum_probs=31.0
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCC----CeEEEecccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNV----PFTITDATAL 199 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~----p~~~~~~s~l 199 (510)
.+..++|+|+||||||++|+.|++.++. ++..+|...+
T Consensus 391 ~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~v 432 (568)
T PRK05537 391 QGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVV 432 (568)
T ss_pred CCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHH
Confidence 4468999999999999999999999964 4566666554
No 349
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.65 E-value=0.0033 Score=57.93 Aligned_cols=34 Identities=26% Similarity=0.387 Sum_probs=24.0
Q ss_pred EEEEccCCChHHHHHHHHHHHhCCCeEEEeccccc
Q 038067 166 VLLMGPTGSGKTLLAKTLARIVNVPFTITDATALT 200 (510)
Q Consensus 166 vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~ 200 (510)
|.|+|++|||||+|++.|++. |.+++.--+..+.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v~E~ar~~~ 35 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVVPEYAREII 35 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE--TTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEEeecHHHHH
Confidence 789999999999999999999 8887744444443
No 350
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.58 E-value=0.0036 Score=49.51 Aligned_cols=31 Identities=32% Similarity=0.528 Sum_probs=24.4
Q ss_pred EEEEccCCChHHHHHHHHHHHh-CCCeEEEec
Q 038067 166 VLLMGPTGSGKTLLAKTLARIV-NVPFTITDA 196 (510)
Q Consensus 166 vLL~GPpGtGKT~lAr~lA~~l-~~p~~~~~~ 196 (510)
+.+.|+||+|||++++.+++.+ +.++..++.
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~~ 33 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVLDE 33 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEEeE
Confidence 6889999999999999999997 234444433
No 351
>PRK04040 adenylate kinase; Provisional
Probab=96.57 E-value=0.0023 Score=60.96 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=22.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHHh
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
..++++|+||||||++++.+++.+
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHh
Confidence 569999999999999999999999
No 352
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.57 E-value=0.0048 Score=61.16 Aligned_cols=34 Identities=29% Similarity=0.540 Sum_probs=28.2
Q ss_pred EEEEccCCChHHHHHHHHHHHh---CCCeEEEecccc
Q 038067 166 VLLMGPTGSGKTLLAKTLARIV---NVPFTITDATAL 199 (510)
Q Consensus 166 vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l 199 (510)
++|+|+||+|||++|+.|++.+ +.+++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 7899999999999999999988 456666665444
No 353
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.56 E-value=0.0086 Score=58.22 Aligned_cols=36 Identities=28% Similarity=0.334 Sum_probs=30.3
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEecc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDAT 197 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s 197 (510)
.+..++++||||+|||++|..++... +.+.+.++..
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 34578999999999999999998655 6788888876
No 354
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.56 E-value=0.018 Score=61.62 Aligned_cols=39 Identities=23% Similarity=0.319 Sum_probs=32.1
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALT 200 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~ 200 (510)
++..++|+||+|+||||++..||..+ |..+..+++..+.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 45789999999999999999999877 6677777775543
No 355
>PRK14527 adenylate kinase; Provisional
Probab=96.55 E-value=0.002 Score=61.23 Aligned_cols=31 Identities=29% Similarity=0.497 Sum_probs=26.6
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeE
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFT 192 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~ 192 (510)
.+.-++++||||+|||++|+.|++.++.+.+
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~i 35 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKL 35 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCCC
Confidence 3457999999999999999999999976544
No 356
>PF13245 AAA_19: Part of AAA domain
Probab=96.53 E-value=0.0041 Score=50.34 Aligned_cols=24 Identities=38% Similarity=0.688 Sum_probs=18.5
Q ss_pred ceEEEEccCCChHH-HHHHHHHHHh
Q 038067 164 SNVLLMGPTGSGKT-LLAKTLARIV 187 (510)
Q Consensus 164 ~~vLL~GPpGtGKT-~lAr~lA~~l 187 (510)
+.+++.|||||||| ++++.++..+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 44666999999999 5666677666
No 357
>PHA01747 putative ATP-dependent protease
Probab=96.52 E-value=0.0068 Score=62.82 Aligned_cols=88 Identities=19% Similarity=0.192 Sum_probs=51.4
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
.+-|++=.||.|||||++-+.+.+..+ +.. .....+.+ ..+-+.-....+.+ ...-+|.+|||..+.
T Consensus 189 ~NyNliELgPRGTGKS~~f~eis~fsp--~~i-SGG~~TvA--------~LFyN~~t~~~GLV--g~~D~VaFDEVa~i~ 255 (425)
T PHA01747 189 RPVHIIELSNRGTGKTTTFVILQELFN--FRY-YTEPPTYA--------NLVYDAKTNALGLV--FLSNGLIFDEIQTWK 255 (425)
T ss_pred CCeeEEEecCCCCChhhHHHHhhhcCC--cee-eCCCCchH--------HheEecCCCceeEE--eeccEEEEEcccccc
Confidence 557899999999999999999877552 222 22222211 11100000000000 112478899999976
Q ss_pred hhccCCCCCCCchhhHHHHHHHHhhCceee
Q 038067 242 KAESRNNGRDVSGEGVQQALLKMLEGTVVN 271 (510)
Q Consensus 242 ~~~~~~~~~~~~~~~v~~~LL~~leg~~~~ 271 (510)
... .+.+.+.|...|+.+.+.
T Consensus 256 f~~---------~kdiv~IMKdYMesG~Fs 276 (425)
T PHA01747 256 DSN---------MRAINSTLSTGMENCVWT 276 (425)
T ss_pred CCC---------HHHHHHHHHHHhhcceee
Confidence 332 124788999999866664
No 358
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.52 E-value=0.0025 Score=61.48 Aligned_cols=35 Identities=40% Similarity=0.553 Sum_probs=28.0
Q ss_pred eEEEEccCCChHHHHHHHHHHHhCCCeEEEecccc
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIVNVPFTITDATAL 199 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l 199 (510)
.++++||||||||.+|-.+|+.+|.|++..|.-..
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~ 37 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQC 37 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceec
Confidence 48999999999999999999999999999986544
No 359
>PRK04182 cytidylate kinase; Provisional
Probab=96.51 E-value=0.0026 Score=59.11 Aligned_cols=29 Identities=34% Similarity=0.533 Sum_probs=26.5
Q ss_pred eEEEEccCCChHHHHHHHHHHHhCCCeEE
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIVNVPFTI 193 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l~~p~~~ 193 (510)
.+++.|++|||||++|+.||+.++.+++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 48999999999999999999999988754
No 360
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.50 E-value=0.0023 Score=60.52 Aligned_cols=29 Identities=34% Similarity=0.516 Sum_probs=25.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhCCCeE
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVNVPFT 192 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~~p~~ 192 (510)
..++|.||+|+||||+++.|+..++.+++
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~ 31 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLL 31 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEE
Confidence 46999999999999999999998875543
No 361
>PLN02674 adenylate kinase
Probab=96.48 E-value=0.0028 Score=62.86 Aligned_cols=36 Identities=19% Similarity=0.333 Sum_probs=29.1
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEecccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATAL 199 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l 199 (510)
+..+++|.||||+||||+|+.||+.++.+. +++.++
T Consensus 30 ~~~~i~l~G~PGsGKgT~a~~La~~~~~~h--is~Gdl 65 (244)
T PLN02674 30 PDKRLILIGPPGSGKGTQSPIIKDEYCLCH--LATGDM 65 (244)
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHcCCcE--EchhHH
Confidence 346799999999999999999999997654 444444
No 362
>PRK06696 uridine kinase; Validated
Probab=96.41 E-value=0.0039 Score=60.83 Aligned_cols=39 Identities=28% Similarity=0.318 Sum_probs=33.1
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALT 200 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~ 200 (510)
.+.-|.+.|+||+||||+|+.|++.+ +.+++.+.+.++-
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 44679999999999999999999999 6677777777764
No 363
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.40 E-value=0.0067 Score=62.77 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=32.0
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccc
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALT 200 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~ 200 (510)
...++|+|+||+|||+|++.|++.++.+++.-...++.
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~~ 199 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYV 199 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHHH
Confidence 45799999999999999999999999988666555444
No 364
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.39 E-value=0.0024 Score=58.14 Aligned_cols=31 Identities=35% Similarity=0.504 Sum_probs=25.2
Q ss_pred EEccCCChHHHHHHHHHHHhCCCeEEEeccccc
Q 038067 168 LMGPTGSGKTLLAKTLARIVNVPFTITDATALT 200 (510)
Q Consensus 168 L~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~ 200 (510)
+.||||+|||++|+.||+.++. ..+++.++.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~--~~is~~~ll 31 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL--VHISVGDLL 31 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS--EEEEHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCc--ceechHHHH
Confidence 6899999999999999999964 555655543
No 365
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.38 E-value=0.0064 Score=64.04 Aligned_cols=77 Identities=25% Similarity=0.339 Sum_probs=46.5
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccccc--------cccccc----hhhHHHHHHHhhchhHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALTQA--------GYVGED----AESVLYKLLAAADFDVEA 226 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~~~--------gy~G~~----~~~~l~~l~~~~~~~~~~ 226 (510)
+..-++++|+||+|||+++..+|..+ +.+.++++..+-... |+.... .+..+..+.+. +..
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~----i~~ 156 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILAS----IEE 156 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHH----HHh
Confidence 44679999999999999999998766 357777765432110 110000 01111222221 233
Q ss_pred hcCcEEEEcchhhhhh
Q 038067 227 AQRGIVYIDEVDKIVK 242 (510)
Q Consensus 227 ~~~~Vl~iDEidkl~~ 242 (510)
..+.+|+||+|..+..
T Consensus 157 ~~~~lVVIDSIq~l~~ 172 (372)
T cd01121 157 LKPDLVIIDSIQTVYS 172 (372)
T ss_pred cCCcEEEEcchHHhhc
Confidence 4678999999998863
No 366
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.38 E-value=0.012 Score=61.77 Aligned_cols=38 Identities=29% Similarity=0.379 Sum_probs=28.4
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh----C-CCeEEEecccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV----N-VPFTITDATAL 199 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l----~-~p~~~~~~s~l 199 (510)
.+..++|+||+|+|||+++..||..+ + ..+..+....+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~ 178 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSY 178 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 45789999999999999999998764 3 34545554443
No 367
>PRK14526 adenylate kinase; Provisional
Probab=96.37 E-value=0.0034 Score=60.93 Aligned_cols=33 Identities=33% Similarity=0.552 Sum_probs=27.0
Q ss_pred eEEEEccCCChHHHHHHHHHHHhCCCeEEEecccc
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIVNVPFTITDATAL 199 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l 199 (510)
+++|+||||+|||++++.||+.++.++ +++.++
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~--is~G~l 34 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYH--ISTGDL 34 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCce--eecChH
Confidence 589999999999999999999987655 444444
No 368
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.37 E-value=0.0043 Score=57.97 Aligned_cols=38 Identities=29% Similarity=0.363 Sum_probs=29.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhC---CCeEEEecccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVN---VPFTITDATAL 199 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~---~p~~~~~~s~l 199 (510)
.+..++|.|++|+|||++|+.+++.+. ...+.++...+
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~ 46 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDEL 46 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHH
Confidence 556899999999999999999999984 23555555443
No 369
>PRK08233 hypothetical protein; Provisional
Probab=96.36 E-value=0.0038 Score=58.15 Aligned_cols=34 Identities=21% Similarity=0.245 Sum_probs=27.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhC-CCeEEEecc
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVN-VPFTITDAT 197 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~-~p~~~~~~s 197 (510)
.-+.+.|+||+||||+|+.|++.++ .+++..|..
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~ 38 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRY 38 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCE
Confidence 4588899999999999999999985 445555544
No 370
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.36 E-value=0.0089 Score=66.58 Aligned_cols=40 Identities=30% Similarity=0.459 Sum_probs=30.1
Q ss_pred ccCceEEEEccCCChHHHHHHHHHHHhC--CCeEEEeccccc
Q 038067 161 LEKSNVLLMGPTGSGKTLLAKTLARIVN--VPFTITDATALT 200 (510)
Q Consensus 161 ~~~~~vLL~GPpGtGKT~lAr~lA~~l~--~p~~~~~~s~l~ 200 (510)
.|+..+.|+||+|+|||++|..|-+.+. .--+.+|..++.
T Consensus 492 ~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~ 533 (716)
T KOG0058|consen 492 RPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPIS 533 (716)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehh
Confidence 3778999999999999999999998883 123444544443
No 371
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=96.36 E-value=0.014 Score=56.89 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=20.1
Q ss_pred ceEEEEccCCChHHHHHHHHHH
Q 038067 164 SNVLLMGPTGSGKTLLAKTLAR 185 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~ 185 (510)
.-++|+||+|+|||++.+.++.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 5689999999999999999974
No 372
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.36 E-value=0.0086 Score=56.14 Aligned_cols=33 Identities=24% Similarity=0.304 Sum_probs=28.5
Q ss_pred eEEEEccCCChHHHHHHHHHHHhCCCeEEEecc
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIVNVPFTITDAT 197 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s 197 (510)
.++++|+||+|||++|..++..++.+++++...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~ 35 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATA 35 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCC
Confidence 589999999999999999999988777665544
No 373
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.35 E-value=0.011 Score=54.99 Aligned_cols=35 Identities=31% Similarity=0.381 Sum_probs=28.9
Q ss_pred eEEEEccCCChHHHHHHHHHHHh---CCCeEEEecccc
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATAL 199 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l 199 (510)
.+++.||||+|||+++..++..+ +..+..+++..+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 47899999999999999999876 566777776644
No 374
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.34 E-value=0.0035 Score=57.79 Aligned_cols=30 Identities=37% Similarity=0.557 Sum_probs=26.5
Q ss_pred eEEEEccCCChHHHHHHHHHHHhCCCeEEE
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIVNVPFTIT 194 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~ 194 (510)
.+.+.|++|+|||++|+.+++.++.|++..
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 489999999999999999999998886543
No 375
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=96.34 E-value=0.0072 Score=69.71 Aligned_cols=91 Identities=19% Similarity=0.211 Sum_probs=56.5
Q ss_pred eEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccch------hhHHHHHHHhh-chhHHHhcCcEEEEcch
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDA------ESVLYKLLAAA-DFDVEAAQRGIVYIDEV 237 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~------~~~l~~l~~~~-~~~~~~~~~~Vl~iDEi 237 (510)
.++++||||+|||+.+..+|+.++..++..|+++.. +++..... ...+...+... ...-......||++||+
T Consensus 359 ~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~R-Sk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~dev 437 (871)
T KOG1968|consen 359 ALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVR-SKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEV 437 (871)
T ss_pred HHHhcCCCCCCchhhHhhhhhhcccceeecCccccc-cccHHHhhhhccccccchhhhhcccccccccccceeEEEEecc
Confidence 479999999999999999999999999999999776 33221110 01111111000 00001123459999999
Q ss_pred hhhhhhccCCCCCCCchhhHHHHHHHHhh
Q 038067 238 DKIVKAESRNNGRDVSGEGVQQALLKMLE 266 (510)
Q Consensus 238 dkl~~~~~~~~~~~~~~~~v~~~LL~~le 266 (510)
|-+... . ++....|-++..
T Consensus 438 D~~~~~-d---------Rg~v~~l~~l~~ 456 (871)
T KOG1968|consen 438 DGMFGE-D---------RGGVSKLSSLCK 456 (871)
T ss_pred ccccch-h---------hhhHHHHHHHHH
Confidence 988752 1 125666666664
No 376
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.34 E-value=0.0033 Score=63.86 Aligned_cols=30 Identities=27% Similarity=0.284 Sum_probs=25.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHHh-CCCeEE
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIV-NVPFTI 193 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l-~~p~~~ 193 (510)
..+++.|+||||||++|+.|++.+ +..++.
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l~ 33 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAVNVN 33 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEEEe
Confidence 468999999999999999999998 544443
No 377
>PRK01184 hypothetical protein; Provisional
Probab=96.31 E-value=0.0035 Score=58.94 Aligned_cols=29 Identities=31% Similarity=0.542 Sum_probs=24.8
Q ss_pred eEEEEccCCChHHHHHHHHHHHhCCCeEEE
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIVNVPFTIT 194 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~ 194 (510)
.++|+||||+||||+++ +++.++.+++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 58999999999999998 788888777554
No 378
>PLN02165 adenylate isopentenyltransferase
Probab=96.30 E-value=0.0036 Score=64.59 Aligned_cols=36 Identities=33% Similarity=0.435 Sum_probs=30.1
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEecc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDAT 197 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s 197 (510)
.+..++|+||||+|||+||..||+.++..++..|.-
T Consensus 42 ~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~ 77 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKM 77 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence 445799999999999999999999998766655543
No 379
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.30 E-value=0.014 Score=61.78 Aligned_cols=38 Identities=34% Similarity=0.486 Sum_probs=28.6
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh-------CCCeEEEecccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV-------NVPFTITDATAL 199 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l-------~~p~~~~~~s~l 199 (510)
.+..++|+||+|+|||+++..+|..+ +..+..+++..+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~ 217 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNY 217 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCc
Confidence 45789999999999999999998765 244555555443
No 380
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.29 E-value=0.014 Score=60.17 Aligned_cols=81 Identities=25% Similarity=0.271 Sum_probs=47.5
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccccccc---cccchh-------hHHHHHHHhhchhHHHhc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALTQAGY---VGEDAE-------SVLYKLLAAADFDVEAAQ 228 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~~~gy---~G~~~~-------~~l~~l~~~~~~~~~~~~ 228 (510)
..+.++++||||||||+||-.++... +.+.+.+|......+.| .|.+.. ....+.+......++...
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~~ 133 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGA 133 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhccC
Confidence 44579999999999999988766544 66788887754322111 011100 001111211111233446
Q ss_pred CcEEEEcchhhhhh
Q 038067 229 RGIVYIDEVDKIVK 242 (510)
Q Consensus 229 ~~Vl~iDEidkl~~ 242 (510)
..+|+||-+..+.+
T Consensus 134 ~~lIVIDSv~al~~ 147 (321)
T TIGR02012 134 VDIIVVDSVAALVP 147 (321)
T ss_pred CcEEEEcchhhhcc
Confidence 68999999998874
No 381
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=96.29 E-value=0.014 Score=55.00 Aligned_cols=39 Identities=23% Similarity=0.381 Sum_probs=31.5
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALT 200 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~ 200 (510)
++.-+++.|+||+|||++|+.|+..+ +...+.++...+.
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r 58 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVR 58 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHH
Confidence 55689999999999999999999987 4456677765553
No 382
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=96.28 E-value=0.0054 Score=62.48 Aligned_cols=30 Identities=27% Similarity=0.367 Sum_probs=26.7
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCe
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPF 191 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~ 191 (510)
.|..+++.|++|||||++|..||+.++.+.
T Consensus 91 ~p~iIlI~G~sgsGKStlA~~La~~l~~~~ 120 (301)
T PRK04220 91 EPIIILIGGASGVGTSTIAFELASRLGIRS 120 (301)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 345799999999999999999999998774
No 383
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.28 E-value=0.011 Score=59.71 Aligned_cols=75 Identities=25% Similarity=0.284 Sum_probs=39.7
Q ss_pred EEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccc--cccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhh
Q 038067 166 VLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALT--QAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKI 240 (510)
Q Consensus 166 vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~--~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl 240 (510)
++|+|.||+|||++|+.|++.+ +..+..++...+. ...|.-...++..+..+...-.. ......||++|...-+
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r-~ls~~~iVI~Dd~nYi 82 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVER-ALSKDTIVILDDNNYI 82 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHH-HHTT-SEEEE-S---S
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHH-hhccCeEEEEeCCchH
Confidence 8999999999999999999987 5667777754443 22243333345555444332111 1234578999987765
Q ss_pred h
Q 038067 241 V 241 (510)
Q Consensus 241 ~ 241 (510)
-
T Consensus 83 K 83 (270)
T PF08433_consen 83 K 83 (270)
T ss_dssp H
T ss_pred H
Confidence 4
No 384
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.27 E-value=0.027 Score=62.30 Aligned_cols=26 Identities=35% Similarity=0.566 Sum_probs=24.5
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
++..+++.||+|||||++.|+||...
T Consensus 418 ~G~~llI~G~SG~GKTsLlRaiaGLW 443 (604)
T COG4178 418 PGERLLITGESGAGKTSLLRALAGLW 443 (604)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 77889999999999999999999877
No 385
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.22 E-value=0.01 Score=61.82 Aligned_cols=27 Identities=33% Similarity=0.616 Sum_probs=24.1
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhC
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVN 188 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~ 188 (510)
+...+++.||+|+|||++.+++.+.+.
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 457899999999999999999998774
No 386
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.22 E-value=0.012 Score=61.81 Aligned_cols=104 Identities=21% Similarity=0.356 Sum_probs=55.7
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhCC-----CeEE--Eeccc-----cccc--cccc-----cchhhHHH---HHHHhh
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVNV-----PFTI--TDATA-----LTQA--GYVG-----EDAESVLY---KLLAAA 220 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~~-----p~~~--~~~s~-----l~~~--gy~G-----~~~~~~l~---~l~~~~ 220 (510)
+...+++||+|||||++++.+++.+.. .++. ++-.. +... +-++ ......+. .+...+
T Consensus 133 GQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~A 212 (380)
T PRK12608 133 GQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLERA 212 (380)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHHH
Confidence 356899999999999999999987722 1222 22111 1000 0011 11111111 122333
Q ss_pred chhHHHhcCcEEEEcchhhhhhhccC---CCCCCCch---hhHHHHHHHHhh
Q 038067 221 DFDVEAAQRGIVYIDEVDKIVKAESR---NNGRDVSG---EGVQQALLKMLE 266 (510)
Q Consensus 221 ~~~~~~~~~~Vl~iDEidkl~~~~~~---~~~~~~~~---~~v~~~LL~~le 266 (510)
.+...+...-||++||+.+++.+... ..++..++ -.+...+-++++
T Consensus 213 e~f~~~GkdVVLvlDsltr~A~A~rei~~~~G~~~s~G~~~s~~~~~~rl~~ 264 (380)
T PRK12608 213 KRLVEQGKDVVILLDSLTRLARAYNNEVESSGRTLSGGVDARALQRPKRLFG 264 (380)
T ss_pred HHHHHcCCCEEEEEeCcHHHHHHHHhhhcccCCCCCCCcChHHHhhhHHHHH
Confidence 33334566779999999999865421 11222221 136777777776
No 387
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.22 E-value=0.0028 Score=58.94 Aligned_cols=38 Identities=29% Similarity=0.364 Sum_probs=25.4
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCC---eEEEecccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVP---FTITDATAL 199 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p---~~~~~~s~l 199 (510)
.+.+++++|++|+|||++.+.+.+.+..+ ++.+++...
T Consensus 23 ~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 23 SPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp ----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 55789999999999999999988777332 666666554
No 388
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.22 E-value=0.0061 Score=56.85 Aligned_cols=38 Identities=32% Similarity=0.531 Sum_probs=30.2
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEecccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATAL 199 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l 199 (510)
++..+.|.|+||+|||++|+.|+..+ +..+..+|...+
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~ 43 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV 43 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH
Confidence 44579999999999999999999988 445666666543
No 389
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.22 E-value=0.014 Score=55.18 Aligned_cols=26 Identities=42% Similarity=0.678 Sum_probs=23.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
.+.++++.||+|+|||+++++++..+
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 45789999999999999999999887
No 390
>PRK14529 adenylate kinase; Provisional
Probab=96.20 E-value=0.0041 Score=60.85 Aligned_cols=28 Identities=29% Similarity=0.571 Sum_probs=25.6
Q ss_pred eEEEEccCCChHHHHHHHHHHHhCCCeE
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIVNVPFT 192 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l~~p~~ 192 (510)
+++|.||||+|||++|+.|++.++.+++
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~i 29 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHI 29 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCc
Confidence 5899999999999999999999987664
No 391
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.20 E-value=0.016 Score=57.39 Aligned_cols=39 Identities=31% Similarity=0.543 Sum_probs=28.3
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhC--CCeEEEeccccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVN--VPFTITDATALT 200 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~--~p~~~~~~s~l~ 200 (510)
.+.-++|.|||||||||+.|.+-+... .--+.++..++.
T Consensus 26 ~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~ 66 (309)
T COG1125 26 EGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDIS 66 (309)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecc
Confidence 345589999999999999999988772 233455554443
No 392
>PLN02459 probable adenylate kinase
Probab=96.20 E-value=0.0051 Score=61.47 Aligned_cols=29 Identities=31% Similarity=0.561 Sum_probs=25.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhCCCeE
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVNVPFT 192 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~~p~~ 192 (510)
.+++|.||||+|||++|+.||+.++.+++
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~~~~~i 58 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLLGVPHI 58 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 56999999999999999999999976554
No 393
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=96.19 E-value=0.0042 Score=56.82 Aligned_cols=34 Identities=32% Similarity=0.499 Sum_probs=29.8
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEe
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITD 195 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~ 195 (510)
.+..+++.|++|+|||+++++|++.++.+|+.-|
T Consensus 11 ~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgD 44 (191)
T KOG3354|consen 11 FKYVIVVMGVSGSGKSTIGKALSEELGLKFIDGD 44 (191)
T ss_pred CceeEEEEecCCCChhhHHHHHHHHhCCcccccc
Confidence 4458999999999999999999999998886544
No 394
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=96.18 E-value=0.0051 Score=63.14 Aligned_cols=36 Identities=36% Similarity=0.501 Sum_probs=31.3
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccc
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATA 198 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~ 198 (510)
+..++++||||||||++|..||+.++.+++..|.-.
T Consensus 4 ~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Q 39 (307)
T PRK00091 4 PKVIVIVGPTASGKTALAIELAKRLNGEIISADSMQ 39 (307)
T ss_pred ceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccc
Confidence 357999999999999999999999988887777644
No 395
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.14 E-value=0.029 Score=59.25 Aligned_cols=38 Identities=26% Similarity=0.349 Sum_probs=30.2
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEecccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATAL 199 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l 199 (510)
.+..++|+||+|+|||+++..||..+ +..+..+++..+
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~ 280 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHS 280 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCc
Confidence 34789999999999999999999877 456666666544
No 396
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.13 E-value=0.023 Score=54.32 Aligned_cols=38 Identities=24% Similarity=0.364 Sum_probs=31.4
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEecccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATAL 199 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l 199 (510)
.+..+.|+|++|+|||++|+.|+..+ +.+.+.++...+
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~ 63 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNV 63 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeH
Confidence 56789999999999999999999987 455677776554
No 397
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.11 E-value=0.0062 Score=54.79 Aligned_cols=29 Identities=34% Similarity=0.426 Sum_probs=25.7
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCC
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVP 190 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p 190 (510)
++..++|.|+.|+|||++++.+++.++.+
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 44679999999999999999999999753
No 398
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.09 E-value=0.019 Score=58.22 Aligned_cols=38 Identities=26% Similarity=0.374 Sum_probs=30.0
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh----C-CCeEEEecccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV----N-VPFTITDATAL 199 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l----~-~p~~~~~~s~l 199 (510)
.+..++|+||+|+|||+++..||..+ + ..+..+++..+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~ 235 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTY 235 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCcc
Confidence 45689999999999999999998766 3 56666666553
No 399
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.07 E-value=0.032 Score=54.35 Aligned_cols=37 Identities=32% Similarity=0.313 Sum_probs=28.7
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---------CCCeEEEeccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---------NVPFTITDATA 198 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---------~~p~~~~~~s~ 198 (510)
...-+.|+||||+|||++|..++... +...++++...
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 44678999999999999999997543 25677777654
No 400
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.06 E-value=0.023 Score=51.55 Aligned_cols=74 Identities=22% Similarity=0.290 Sum_probs=41.8
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCC--CeEEEeccccccccccccchhhHHHHH-HHhhchhHHHhcCcEEEEcchh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNV--PFTITDATALTQAGYVGEDAESVLYKL-LAAADFDVEAAQRGIVYIDEVD 238 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~--p~~~~~~s~l~~~gy~G~~~~~~l~~l-~~~~~~~~~~~~~~Vl~iDEid 238 (510)
+...+.+.||+|+|||+++++++..+.. --+.++.. ...+|+..-..+..+.+ +..+ -...+.++++||..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~--~~i~~~~~lS~G~~~rv~lara----l~~~p~illlDEP~ 98 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST--VKIGYFEQLSGGEKMRLALAKL----LLENPNLLLLDEPT 98 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe--EEEEEEccCCHHHHHHHHHHHH----HhcCCCEEEEeCCc
Confidence 4567899999999999999999987621 11222221 11223221112222211 1111 23467899999987
Q ss_pred hhh
Q 038067 239 KIV 241 (510)
Q Consensus 239 kl~ 241 (510)
.-.
T Consensus 99 ~~L 101 (144)
T cd03221 99 NHL 101 (144)
T ss_pred cCC
Confidence 644
No 401
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.04 E-value=0.015 Score=62.78 Aligned_cols=77 Identities=23% Similarity=0.294 Sum_probs=47.6
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccccc-----cccccch-------hhHHHHHHHhhchhHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALTQA-----GYVGEDA-------ESVLYKLLAAADFDVEA 226 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~~~-----gy~G~~~-------~~~l~~l~~~~~~~~~~ 226 (510)
+...++++||||+|||+++..++... +.+.++++..+-... .-.|.+. +..+..+++. +.+
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~----i~~ 154 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILAT----IEE 154 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHH----HHh
Confidence 44679999999999999999998766 567788776542210 0001000 0112222221 234
Q ss_pred hcCcEEEEcchhhhhh
Q 038067 227 AQRGIVYIDEVDKIVK 242 (510)
Q Consensus 227 ~~~~Vl~iDEidkl~~ 242 (510)
....+|+||++..+..
T Consensus 155 ~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 155 EKPDLVVIDSIQTMYS 170 (446)
T ss_pred hCCCEEEEechhhhcc
Confidence 4678999999998764
No 402
>PLN02318 phosphoribulokinase/uridine kinase
Probab=96.04 E-value=0.055 Score=59.85 Aligned_cols=25 Identities=28% Similarity=0.509 Sum_probs=22.7
Q ss_pred CceEEEEccCCChHHHHHHHHHHHh
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
+.-|.+.||+|+|||++|+.|+..+
T Consensus 65 riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 65 IILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred eEEEEEECCCCCcHHHHHHHHHhhC
Confidence 3568999999999999999999887
No 403
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.04 E-value=0.034 Score=56.50 Aligned_cols=78 Identities=21% Similarity=0.234 Sum_probs=50.5
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
....+-|+|.+++|||++++..+...|.|- .+..+ |-+. ...+... ........++|||+....
T Consensus 192 ~~~~~hl~G~Ss~GKTt~~~~a~Sv~G~p~------~l~~s-w~~T--~n~le~~-------a~~~nd~~l~lDE~~~~~ 255 (286)
T PF06048_consen 192 EGFGFHLYGQSSSGKTTALQLAASVWGNPD------GLIRS-WNST--DNGLERT-------AAAHNDLPLVLDELSQAD 255 (286)
T ss_pred CceEEEEEeCCCCCHHHHHHHhhhhCcCch------hhhhc-chhh--HHHHHHH-------HHHcCCcceEehhccccc
Confidence 446799999999999999999999998876 22211 2111 1111111 123466899999998754
Q ss_pred hhccCCCCCCCchhhHHHHHHHHhhC
Q 038067 242 KAESRNNGRDVSGEGVQQALLKMLEG 267 (510)
Q Consensus 242 ~~~~~~~~~~~~~~~v~~~LL~~leg 267 (510)
+. .+.+.++.+-+|
T Consensus 256 ~~------------~~~~~iY~l~nG 269 (286)
T PF06048_consen 256 PK------------DVGSIIYMLANG 269 (286)
T ss_pred hh------------HHHHHHHHHhCC
Confidence 33 266666666653
No 404
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.03 E-value=0.017 Score=58.21 Aligned_cols=87 Identities=22% Similarity=0.282 Sum_probs=54.6
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
+.+|+||+|.+|+||++++|..|-..+..++.+..+. +|--.+...-+..++.++. .+..+.+++|+|-+-..
T Consensus 30 ~~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~----~y~~~~f~~dLk~~~~~ag---~~~~~~vfll~d~qi~~ 102 (268)
T PF12780_consen 30 PRGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITK----GYSIKDFKEDLKKALQKAG---IKGKPTVFLLTDSQIVD 102 (268)
T ss_dssp TTEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTST----TTHHHHHHHHHHHHHHHHH---CS-S-EEEEEECCCSSS
T ss_pred CCCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeC----CcCHHHHHHHHHHHHHHHh---ccCCCeEEEecCcccch
Confidence 6689999999999999999999988887777766542 3422222333444444432 23456788888755322
Q ss_pred hhccCCCCCCCchhhHHHHHHHHhhCc
Q 038067 242 KAESRNNGRDVSGEGVQQALLKMLEGT 268 (510)
Q Consensus 242 ~~~~~~~~~~~~~~~v~~~LL~~leg~ 268 (510)
. .....+-.+|..|
T Consensus 103 ~-------------~fLe~in~LL~sG 116 (268)
T PF12780_consen 103 E-------------SFLEDINSLLSSG 116 (268)
T ss_dssp C-------------HHHHHHHHHHHCS
T ss_pred H-------------hHHHHHHHHHhCC
Confidence 1 2566777777533
No 405
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.021 Score=65.71 Aligned_cols=96 Identities=26% Similarity=0.333 Sum_probs=62.7
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh----------CCCeEEEecccccc-ccccccchhhHHHHHHHhhchhHHHhcCc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV----------NVPFTITDATALTQ-AGYVGEDAESVLYKLLAAADFDVEAAQRG 230 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l----------~~p~~~~~~s~l~~-~gy~G~~~~~~l~~l~~~~~~~~~~~~~~ 230 (510)
.++|-+|+|.||+|||.+++-+|+.. +..++.++...+.. +.|.|+ .+..+..+.+.... ...+-
T Consensus 207 tk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge-~E~rlk~l~k~v~~---~~~gv 282 (898)
T KOG1051|consen 207 TKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGE-FEERLKELLKEVES---GGGGV 282 (898)
T ss_pred CCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchH-HHHHHHHHHHHHhc---CCCcE
Confidence 55799999999999999999999877 23556666665442 224443 35666666654321 23556
Q ss_pred EEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhh
Q 038067 231 IVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLE 266 (510)
Q Consensus 231 Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~le 266 (510)
||||||++-+..+... .+.....+.|-.++.
T Consensus 283 ILfigelh~lvg~g~~-----~~~~d~~nlLkp~L~ 313 (898)
T KOG1051|consen 283 ILFLGELHWLVGSGSN-----YGAIDAANLLKPLLA 313 (898)
T ss_pred EEEecceeeeecCCCc-----chHHHHHHhhHHHHh
Confidence 9999999988765432 123345566666653
No 406
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=96.02 E-value=0.0077 Score=66.65 Aligned_cols=34 Identities=29% Similarity=0.652 Sum_probs=31.5
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhCCCeEEEec
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDA 196 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~ 196 (510)
...++|+|.+|+|||++++.+|+.++.||+..|.
T Consensus 6 ~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~ 39 (542)
T PRK14021 6 RPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADV 39 (542)
T ss_pred CccEEEECCCCCCHHHHHHHHHHHhCCCEEEchH
Confidence 3579999999999999999999999999998885
No 407
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.02 E-value=0.0094 Score=59.88 Aligned_cols=27 Identities=37% Similarity=0.491 Sum_probs=23.1
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhC
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVN 188 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~ 188 (510)
+...+++.||+|+|||++++++...+.
T Consensus 79 ~~GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 79 PHGIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhhhC
Confidence 445799999999999999999877763
No 408
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.92 E-value=0.0065 Score=56.78 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=22.2
Q ss_pred eEEEEccCCChHHHHHHHHHHHhC
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIVN 188 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l~ 188 (510)
.++++||||+|||++++.|+..++
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999999874
No 409
>PF13479 AAA_24: AAA domain
Probab=95.91 E-value=0.011 Score=57.22 Aligned_cols=21 Identities=52% Similarity=0.852 Sum_probs=19.1
Q ss_pred CceEEEEccCCChHHHHHHHH
Q 038067 163 KSNVLLMGPTGSGKTLLAKTL 183 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~l 183 (510)
+-.++++||||+|||++|..+
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC
Confidence 357999999999999999988
No 410
>PRK13808 adenylate kinase; Provisional
Probab=95.89 E-value=0.0077 Score=62.30 Aligned_cols=30 Identities=30% Similarity=0.493 Sum_probs=26.1
Q ss_pred eEEEEccCCChHHHHHHHHHHHhCCCeEEE
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIVNVPFTIT 194 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~ 194 (510)
.|+|+||||+|||++++.|++.++.+++.+
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is~ 31 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQLST 31 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceecc
Confidence 589999999999999999999998755443
No 411
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.88 E-value=0.031 Score=51.69 Aligned_cols=26 Identities=31% Similarity=0.474 Sum_probs=23.5
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
++..+.|.||+|+|||+|.+.++...
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 55689999999999999999999876
No 412
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.86 E-value=0.0096 Score=57.20 Aligned_cols=29 Identities=24% Similarity=0.320 Sum_probs=25.5
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhCCCe
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVNVPF 191 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~~p~ 191 (510)
+..+++.|+||+|||++|+.||+.++.++
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 45799999999999999999999987654
No 413
>COG1485 Predicted ATPase [General function prediction only]
Probab=95.86 E-value=0.018 Score=59.35 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=24.3
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
+++++.|||+-|+|||+|.-..-..+
T Consensus 64 ~~~GlYl~GgVGrGKT~LMD~Fy~~l 89 (367)
T COG1485 64 PVRGLYLWGGVGRGKTMLMDLFYESL 89 (367)
T ss_pred CCceEEEECCCCccHHHHHHHHHhhC
Confidence 77899999999999999999998887
No 414
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.84 E-value=0.01 Score=55.91 Aligned_cols=35 Identities=31% Similarity=0.451 Sum_probs=29.0
Q ss_pred EEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccc
Q 038067 166 VLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALT 200 (510)
Q Consensus 166 vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~ 200 (510)
+.+.|+||+|||++|+.|++.+ +.+...++..++-
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~ 39 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYY 39 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcc
Confidence 7899999999999999999998 4566667666654
No 415
>PRK10867 signal recognition particle protein; Provisional
Probab=95.83 E-value=0.032 Score=59.90 Aligned_cols=39 Identities=23% Similarity=0.376 Sum_probs=31.2
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh----CCCeEEEeccccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV----NVPFTITDATALT 200 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l----~~p~~~~~~s~l~ 200 (510)
++..++++||+|+||||++-.+|..+ +..+..+++..+.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R 141 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYR 141 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccc
Confidence 46789999999999999888888765 5667777776554
No 416
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=95.81 E-value=0.0086 Score=56.39 Aligned_cols=28 Identities=32% Similarity=0.617 Sum_probs=24.8
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhCCC
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVNVP 190 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~~p 190 (510)
+..+.+.||+|+|||++++.++..++.+
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~~~ 30 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFSAK 30 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCE
Confidence 3568999999999999999999998653
No 417
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=95.78 E-value=0.0094 Score=56.06 Aligned_cols=29 Identities=38% Similarity=0.567 Sum_probs=24.8
Q ss_pred EEEEccCCChHHHHHHHHHHHhCCCeEEEe
Q 038067 166 VLLMGPTGSGKTLLAKTLARIVNVPFTITD 195 (510)
Q Consensus 166 vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~ 195 (510)
+.++|++|+|||++++.+++ +|.+++..|
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D 30 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVIDAD 30 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEEecC
Confidence 78999999999999999999 777665444
No 418
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.77 E-value=0.019 Score=55.69 Aligned_cols=22 Identities=36% Similarity=0.597 Sum_probs=20.3
Q ss_pred ceEEEEccCCChHHHHHHHHHH
Q 038067 164 SNVLLMGPTGSGKTLLAKTLAR 185 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~ 185 (510)
+.++|+||.|+|||++.|.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6699999999999999999984
No 419
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.77 E-value=0.039 Score=52.07 Aligned_cols=26 Identities=38% Similarity=0.567 Sum_probs=23.3
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
+...+.|.||+|+|||||.+.++..+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 45678999999999999999999876
No 420
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.76 E-value=0.02 Score=57.76 Aligned_cols=38 Identities=21% Similarity=0.352 Sum_probs=30.6
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEecccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATAL 199 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l 199 (510)
.+..++|+||+|+|||+++..+|..+ +..+..+++..+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 45689999999999999999999877 556666766554
No 421
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.74 E-value=0.013 Score=55.81 Aligned_cols=34 Identities=24% Similarity=0.370 Sum_probs=26.2
Q ss_pred EEEEccCCChHHHHHHHHHHHhC-CCeEEEecccc
Q 038067 166 VLLMGPTGSGKTLLAKTLARIVN-VPFTITDATAL 199 (510)
Q Consensus 166 vLL~GPpGtGKT~lAr~lA~~l~-~p~~~~~~s~l 199 (510)
+.+.||+|+|||++++.|+..++ .....+.+.++
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~ 36 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSY 36 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCeEEEEeccc
Confidence 67999999999999999999983 33444544443
No 422
>PRK13764 ATPase; Provisional
Probab=95.73 E-value=0.018 Score=64.00 Aligned_cols=28 Identities=29% Similarity=0.532 Sum_probs=25.2
Q ss_pred ccCceEEEEccCCChHHHHHHHHHHHhC
Q 038067 161 LEKSNVLLMGPTGSGKTLLAKTLARIVN 188 (510)
Q Consensus 161 ~~~~~vLL~GPpGtGKT~lAr~lA~~l~ 188 (510)
..+.++|++||||+||||++++++..+.
T Consensus 255 ~~~~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 255 ERAEGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3568899999999999999999998884
No 423
>PRK09354 recA recombinase A; Provisional
Probab=95.73 E-value=0.022 Score=59.28 Aligned_cols=81 Identities=26% Similarity=0.277 Sum_probs=48.0
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccccccc---cccchhh-------HHHHHHHhhchhHHHhc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALTQAGY---VGEDAES-------VLYKLLAAADFDVEAAQ 228 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~~~gy---~G~~~~~-------~l~~l~~~~~~~~~~~~ 228 (510)
..+.++++||+|||||+||-.++... +.+.+++|...-..+.| .|.+... .....+......++...
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~ 138 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGA 138 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCC
Confidence 44578899999999999998776443 67788888765322211 1111100 01111222222234456
Q ss_pred CcEEEEcchhhhhh
Q 038067 229 RGIVYIDEVDKIVK 242 (510)
Q Consensus 229 ~~Vl~iDEidkl~~ 242 (510)
..+|+||-+..+.+
T Consensus 139 ~~lIVIDSvaaL~~ 152 (349)
T PRK09354 139 VDLIVVDSVAALVP 152 (349)
T ss_pred CCEEEEeChhhhcc
Confidence 68999999998864
No 424
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.73 E-value=0.0049 Score=61.70 Aligned_cols=74 Identities=27% Similarity=0.388 Sum_probs=41.1
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCC---CeEEEec-ccccccc-----ccccchhhHHHHHHHhhchhHHHhcCcEE
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNV---PFTITDA-TALTQAG-----YVGEDAESVLYKLLAAADFDVEAAQRGIV 232 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~---p~~~~~~-s~l~~~g-----y~G~~~~~~l~~l~~~~~~~~~~~~~~Vl 232 (510)
...++++.||+|+|||++++++.+.+.. .++.+.- .++.-.+ +........+..++..+ ....+.+|
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~~~~~~~~~~~~~~~~l~~~----LR~~pD~i 201 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQIQIQTRRDEISYEDLLKSA----LRQDPDVI 201 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSEEEEEEETTTBSHHHHHHHH----TTS--SEE
T ss_pred cceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccceEEEEeecCcccHHHHHHHH----hcCCCCcc
Confidence 4689999999999999999999998833 3343332 2221110 11110112233333332 12356799
Q ss_pred EEcchhh
Q 038067 233 YIDEVDK 239 (510)
Q Consensus 233 ~iDEidk 239 (510)
+++||-.
T Consensus 202 iigEiR~ 208 (270)
T PF00437_consen 202 IIGEIRD 208 (270)
T ss_dssp EESCE-S
T ss_pred cccccCC
Confidence 9999986
No 425
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.73 E-value=0.037 Score=51.82 Aligned_cols=32 Identities=31% Similarity=0.432 Sum_probs=27.1
Q ss_pred EEEEccCCChHHHHHHHHHHHhCCCeEEEecc
Q 038067 166 VLLMGPTGSGKTLLAKTLARIVNVPFTITDAT 197 (510)
Q Consensus 166 vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s 197 (510)
+|++|++|+|||++|..++...+.+.+++...
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~ 33 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATA 33 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEcc
Confidence 68999999999999999998877677777544
No 426
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=95.71 E-value=0.03 Score=53.85 Aligned_cols=96 Identities=23% Similarity=0.326 Sum_probs=55.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhhhh
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIVKA 243 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~~~ 243 (510)
..++|.|+-|+|||+..+.|+..+ ..+. +... +.......+. ..-|+.|||++.+.++
T Consensus 53 ~~lvl~G~QG~GKStf~~~L~~~~-----~~d~--~~~~-----~~kd~~~~l~----------~~~iveldEl~~~~k~ 110 (198)
T PF05272_consen 53 TVLVLVGKQGIGKSTFFRKLGPEY-----FSDS--INDF-----DDKDFLEQLQ----------GKWIVELDELDGLSKK 110 (198)
T ss_pred eeeeEecCCcccHHHHHHHHhHHh-----ccCc--cccC-----CCcHHHHHHH----------HhHheeHHHHhhcchh
Confidence 569999999999999999996552 1111 1100 0011122221 2258999999998744
Q ss_pred ccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCC
Q 038067 244 ESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGA 302 (510)
Q Consensus 244 ~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~ 302 (510)
-++.|-.++-....++ ..+.++...-...+.+||+|+|
T Consensus 111 -------------~~~~lK~~iT~~~~~~--------R~pY~~~~~~~~R~~~figTtN 148 (198)
T PF05272_consen 111 -------------DVEALKSFITRRTDTY--------RPPYGRDPEEFPRRAVFIGTTN 148 (198)
T ss_pred -------------hHHHHHHHhcccceee--------ecCCcCcceeeceeEEEEeccC
Confidence 2566766665332221 1223333334445667888877
No 427
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.71 E-value=0.028 Score=57.98 Aligned_cols=37 Identities=22% Similarity=0.270 Sum_probs=29.6
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATA 198 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~ 198 (510)
.+..++|+||+|+||||++..||..+ +..+..+++..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~ 152 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDT 152 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCc
Confidence 45789999999999999999999887 45555555543
No 428
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.70 E-value=0.037 Score=57.19 Aligned_cols=81 Identities=25% Similarity=0.285 Sum_probs=48.0
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccccccc---cccchhh-------HHHHHHHhhchhHHHhc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALTQAGY---VGEDAES-------VLYKLLAAADFDVEAAQ 228 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~~~gy---~G~~~~~-------~l~~l~~~~~~~~~~~~ 228 (510)
..+-+.++||||||||++|-.++... +.+.+.+|...-..+.| .|.+... ...+++......++...
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~ 133 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGA 133 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccC
Confidence 34578899999999999998876544 67888888754322111 1111000 01111111122234456
Q ss_pred CcEEEEcchhhhhh
Q 038067 229 RGIVYIDEVDKIVK 242 (510)
Q Consensus 229 ~~Vl~iDEidkl~~ 242 (510)
..+|+||-+..+.+
T Consensus 134 ~~lIVIDSvaal~~ 147 (325)
T cd00983 134 VDLIVVDSVAALVP 147 (325)
T ss_pred CCEEEEcchHhhcc
Confidence 68999999998874
No 429
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=95.69 E-value=0.12 Score=51.21 Aligned_cols=88 Identities=13% Similarity=0.047 Sum_probs=53.7
Q ss_pred ceEEEEccCC-ChHHHHHHHHHHHhCC---------CeEEEecccc--ccccccccchhhHHHHHHHhhchhHHHhcCcE
Q 038067 164 SNVLLMGPTG-SGKTLLAKTLARIVNV---------PFTITDATAL--TQAGYVGEDAESVLYKLLAAADFDVEAAQRGI 231 (510)
Q Consensus 164 ~~vLL~GPpG-tGKT~lAr~lA~~l~~---------p~~~~~~s~l--~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~V 231 (510)
+..||.|..+ ++|..++.-+++.+.. .+..+....- .....++ -..++++.+.....-..+..-|
T Consensus 16 hAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~---IdqIReL~~~l~~~p~~g~~KV 92 (263)
T PRK06581 16 NSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNIS---IEQIRKLQDFLSKTSAISGYKV 92 (263)
T ss_pred heeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCccc---HHHHHHHHHHHhhCcccCCcEE
Confidence 5799999998 9999999999988821 2222221100 0000111 1223443332211112345679
Q ss_pred EEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhC
Q 038067 232 VYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEG 267 (510)
Q Consensus 232 l~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg 267 (510)
++|+++|+|... ..++||+.||+
T Consensus 93 iII~~ae~mt~~-------------AANALLKtLEE 115 (263)
T PRK06581 93 AIIYSAELMNLN-------------AANSCLKILED 115 (263)
T ss_pred EEEechHHhCHH-------------HHHHHHHhhcC
Confidence 999999999865 69999999984
No 430
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.68 E-value=0.037 Score=55.34 Aligned_cols=36 Identities=19% Similarity=0.311 Sum_probs=28.3
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEecc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDAT 197 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s 197 (510)
....++++||||||||++|-.++... +.+.++++..
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 55779999999999999999876543 5677776654
No 431
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=95.68 E-value=0.0098 Score=64.92 Aligned_cols=32 Identities=28% Similarity=0.609 Sum_probs=29.7
Q ss_pred eEEEEccCCChHHHHHHHHHHHhCCCeEEEec
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIVNVPFTITDA 196 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~ 196 (510)
+++|+|++|+|||++++.+|+.++.+++..|.
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~ 33 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDE 33 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCeEEECcH
Confidence 69999999999999999999999999987774
No 432
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.67 E-value=0.028 Score=58.79 Aligned_cols=24 Identities=42% Similarity=0.668 Sum_probs=22.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHHh
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
..+++.|.||||||.||-.+++.+
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHh
Confidence 468999999999999999999887
No 433
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.67 E-value=0.01 Score=53.52 Aligned_cols=25 Identities=36% Similarity=0.597 Sum_probs=22.2
Q ss_pred EEEEccCCChHHHHHHHHHHHhCCC
Q 038067 166 VLLMGPTGSGKTLLAKTLARIVNVP 190 (510)
Q Consensus 166 vLL~GPpGtGKT~lAr~lA~~l~~p 190 (510)
++|.||||+|||++++.|++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCcc
Confidence 6899999999999999999987543
No 434
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.65 E-value=0.014 Score=56.35 Aligned_cols=36 Identities=28% Similarity=0.351 Sum_probs=29.1
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEecc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDAT 197 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s 197 (510)
.+..++++|+||+|||++|..+|... +.+.+.++..
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 44669999999999999999998765 5677777653
No 435
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.65 E-value=0.011 Score=56.69 Aligned_cols=22 Identities=32% Similarity=0.593 Sum_probs=16.6
Q ss_pred EEEEccCCChHHHHHHHHHHHh
Q 038067 166 VLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 166 vLL~GPpGtGKT~lAr~lA~~l 187 (510)
.++.||||||||+++..+...+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 9999999999997665555544
No 436
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.65 E-value=0.045 Score=50.05 Aligned_cols=27 Identities=37% Similarity=0.658 Sum_probs=23.6
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhC
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVN 188 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~ 188 (510)
+...+.|.||+|+|||++.++++..+.
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 446799999999999999999998773
No 437
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=95.64 E-value=0.012 Score=59.85 Aligned_cols=34 Identities=35% Similarity=0.599 Sum_probs=30.0
Q ss_pred EEEEccCCChHHHHHHHHHHHhCCCeEEEecccc
Q 038067 166 VLLMGPTGSGKTLLAKTLARIVNVPFTITDATAL 199 (510)
Q Consensus 166 vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l 199 (510)
++++||||+|||++|..||+.++..++.+|.-.+
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qv 35 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQI 35 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCcEEEechhhe
Confidence 7899999999999999999999888877776544
No 438
>PLN02840 tRNA dimethylallyltransferase
Probab=95.64 E-value=0.013 Score=62.50 Aligned_cols=37 Identities=32% Similarity=0.520 Sum_probs=31.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATA 198 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~ 198 (510)
....+++.||+|+|||++|..||+.++.+++.+|.-.
T Consensus 20 ~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~q 56 (421)
T PLN02840 20 KEKVIVISGPTGAGKSRLALELAKRLNGEIISADSVQ 56 (421)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccccc
Confidence 3456999999999999999999999998887777643
No 439
>PRK08356 hypothetical protein; Provisional
Probab=95.62 E-value=0.012 Score=56.03 Aligned_cols=32 Identities=22% Similarity=0.203 Sum_probs=25.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccc
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATA 198 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~ 198 (510)
..++|+||||+|||++|+.|++ .+.+ .+++++
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~~-~g~~--~is~~~ 37 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFEE-KGFC--RVSCSD 37 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHH-CCCc--EEeCCC
Confidence 4689999999999999999964 6655 455554
No 440
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.61 E-value=0.01 Score=56.50 Aligned_cols=23 Identities=61% Similarity=0.915 Sum_probs=21.7
Q ss_pred EEEEccCCChHHHHHHHHHHHhC
Q 038067 166 VLLMGPTGSGKTLLAKTLARIVN 188 (510)
Q Consensus 166 vLL~GPpGtGKT~lAr~lA~~l~ 188 (510)
|.+.||||+|||++|+.|+..++
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 67999999999999999999995
No 441
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.60 E-value=0.01 Score=56.68 Aligned_cols=27 Identities=33% Similarity=0.495 Sum_probs=24.3
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhC
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVN 188 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~ 188 (510)
++..++|+||||+|||++++.|++.+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 446799999999999999999999875
No 442
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=95.60 E-value=0.012 Score=56.40 Aligned_cols=33 Identities=30% Similarity=0.426 Sum_probs=28.0
Q ss_pred eEEEEccCCChHHHHHHHHHHHhCCCeEEEecccc
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIVNVPFTITDATAL 199 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l 199 (510)
.+.++|++|+|||++++.+++.+|.+++ |+..+
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i--~~D~~ 35 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPIL--DADIY 35 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEe--eCcHH
Confidence 4899999999999999999998888776 44444
No 443
>PRK07667 uridine kinase; Provisional
Probab=95.59 E-value=0.017 Score=55.14 Aligned_cols=36 Identities=25% Similarity=0.312 Sum_probs=29.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHHh---CCCeEEEecccc
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATAL 199 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l 199 (510)
.-|.+.|+||+|||++|+.|++.+ +.+...++..++
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~ 56 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDY 56 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcc
Confidence 468999999999999999999988 456666666664
No 444
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.59 E-value=0.023 Score=58.35 Aligned_cols=26 Identities=38% Similarity=0.655 Sum_probs=24.0
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
.+.++++.||+|+|||++++++...+
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~ 168 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEI 168 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccC
Confidence 55799999999999999999999887
No 445
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.58 E-value=0.052 Score=54.25 Aligned_cols=27 Identities=26% Similarity=0.480 Sum_probs=24.3
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhC
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVN 188 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~ 188 (510)
.+..+-|+|++||||||++|.+.+...
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~ 64 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEE 64 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcC
Confidence 557899999999999999999998874
No 446
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=95.57 E-value=0.0086 Score=55.59 Aligned_cols=26 Identities=35% Similarity=0.524 Sum_probs=22.3
Q ss_pred EccCCChHHHHHHHHHHHhCCCeEEE
Q 038067 169 MGPTGSGKTLLAKTLARIVNVPFTIT 194 (510)
Q Consensus 169 ~GPpGtGKT~lAr~lA~~l~~p~~~~ 194 (510)
.||||+|||++++.++..++.+++.-
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~ 26 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDG 26 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeC
Confidence 49999999999999999998655544
No 447
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=95.57 E-value=0.022 Score=54.46 Aligned_cols=21 Identities=38% Similarity=0.648 Sum_probs=19.6
Q ss_pred ceEEEEccCCChHHHHHHHHH
Q 038067 164 SNVLLMGPTGSGKTLLAKTLA 184 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA 184 (510)
+.++|+||.|+|||++.+.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 359999999999999999998
No 448
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.56 E-value=0.011 Score=56.25 Aligned_cols=22 Identities=59% Similarity=0.665 Sum_probs=20.9
Q ss_pred EEEEccCCChHHHHHHHHHHHh
Q 038067 166 VLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 166 vLL~GPpGtGKT~lAr~lA~~l 187 (510)
+.+.|+||||||++|+.|++.+
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6789999999999999999998
No 449
>PRK12338 hypothetical protein; Provisional
Probab=95.55 E-value=0.012 Score=60.38 Aligned_cols=29 Identities=31% Similarity=0.488 Sum_probs=26.2
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhCCCe
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVNVPF 191 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~~p~ 191 (510)
|..+++.|+||||||++|+.||+.++.+.
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l~~~~ 32 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTLNIKH 32 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHCCCeE
Confidence 46799999999999999999999998754
No 450
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.55 E-value=0.0092 Score=57.26 Aligned_cols=22 Identities=50% Similarity=0.733 Sum_probs=21.5
Q ss_pred EEEEccCCChHHHHHHHHHHHh
Q 038067 166 VLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 166 vLL~GPpGtGKT~lAr~lA~~l 187 (510)
++|+|+||+|||+.|+-||+.|
T Consensus 4 iIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHH
Confidence 8999999999999999999999
No 451
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.54 E-value=0.016 Score=58.35 Aligned_cols=24 Identities=46% Similarity=0.717 Sum_probs=22.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHHh
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
.|++++||+|+|||++.+.++..+
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~ 135 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARIL 135 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCcc
Confidence 589999999999999999999988
No 452
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.53 E-value=0.043 Score=53.35 Aligned_cols=37 Identities=32% Similarity=0.310 Sum_probs=27.5
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh----CCCeEEEeccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV----NVPFTITDATA 198 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l----~~p~~~~~~s~ 198 (510)
.++.+|+.||||||||+++..++... +.+.+.+...+
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee 58 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEE 58 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecC
Confidence 55789999999999999998866333 67877777643
No 453
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.50 E-value=0.012 Score=56.06 Aligned_cols=26 Identities=15% Similarity=0.256 Sum_probs=23.1
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
.+.-++|+||||+|||+|++.|.+..
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45679999999999999999998876
No 454
>PLN02796 D-glycerate 3-kinase
Probab=95.49 E-value=0.22 Score=51.87 Aligned_cols=27 Identities=30% Similarity=0.383 Sum_probs=23.6
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhC
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVN 188 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~ 188 (510)
.+.-+-+.||+||||||+++.|+..+.
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL~ 125 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLFN 125 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHhc
Confidence 345688999999999999999999884
No 455
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.49 E-value=0.088 Score=51.52 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=20.9
Q ss_pred CceEEEEccCCChHHHHHHHHHH
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLAR 185 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~ 185 (510)
...++|+||.|+|||++.+.++.
T Consensus 31 g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999987
No 456
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.48 E-value=0.01 Score=55.35 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=22.4
Q ss_pred eEEEEccCCChHHHHHHHHHHHhCC
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIVNV 189 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l~~ 189 (510)
-++|.||+|+|||++++.|++.+..
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCcc
Confidence 5899999999999999999997643
No 457
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.47 E-value=0.032 Score=53.46 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=20.4
Q ss_pred ceEEEEccCCChHHHHHHHHHH
Q 038067 164 SNVLLMGPTGSGKTLLAKTLAR 185 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~ 185 (510)
..++|+||.|+|||++.+.++.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 5799999999999999999994
No 458
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=95.46 E-value=0.015 Score=56.68 Aligned_cols=29 Identities=28% Similarity=0.536 Sum_probs=26.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhCCCeE
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVNVPFT 192 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~~p~~ 192 (510)
..+.+.||+|+|||++++.||+.++.+++
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~~~~~ 31 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLGYAYL 31 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 36899999999999999999999987765
No 459
>PRK13975 thymidylate kinase; Provisional
Probab=95.41 E-value=0.018 Score=54.48 Aligned_cols=27 Identities=41% Similarity=0.433 Sum_probs=24.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhCCC
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVNVP 190 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~~p 190 (510)
.-+.|.|++|+|||++++.|++.++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~~ 29 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNAF 29 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 359999999999999999999999753
No 460
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.38 E-value=0.046 Score=59.01 Aligned_cols=71 Identities=24% Similarity=0.383 Sum_probs=45.5
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeE-EEecc---ccccccc--------cccchhhHHHHHHHhhchhHHHhcC
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFT-ITDAT---ALTQAGY--------VGEDAESVLYKLLAAADFDVEAAQR 229 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~-~~~~s---~l~~~gy--------~G~~~~~~l~~l~~~~~~~~~~~~~ 229 (510)
+.+=+|++||+|+|||++..++.+.++.+.. .+... ++.-+|. .|-+....++.+++. .+
T Consensus 257 p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~~~gI~Q~qVN~k~gltfa~~LRa~LRq--------DP 328 (500)
T COG2804 257 PQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQLPGINQVQVNPKIGLTFARALRAILRQ--------DP 328 (500)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeeeecCCcceeecccccCCCHHHHHHHHhcc--------CC
Confidence 5567999999999999999999988865433 22222 2221221 233334444444443 56
Q ss_pred cEEEEcchhhh
Q 038067 230 GIVYIDEVDKI 240 (510)
Q Consensus 230 ~Vl~iDEidkl 240 (510)
-||++.||-..
T Consensus 329 DvImVGEIRD~ 339 (500)
T COG2804 329 DVIMVGEIRDL 339 (500)
T ss_pred CeEEEeccCCH
Confidence 79999999764
No 461
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=95.37 E-value=0.017 Score=58.92 Aligned_cols=37 Identities=32% Similarity=0.434 Sum_probs=33.0
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhCCCeEEEecccc
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATAL 199 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l 199 (510)
+.-++++|||+||||.+|-.||+.++.+++.+|.-.+
T Consensus 3 ~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQv 39 (308)
T COG0324 3 PKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQV 39 (308)
T ss_pred ccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhh
Confidence 3569999999999999999999999999998887554
No 462
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.36 E-value=0.2 Score=47.83 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=22.3
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
...++.+++++|.|||++|-.+|-..
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra 46 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRA 46 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHH
Confidence 45789999999999999998887544
No 463
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.35 E-value=0.064 Score=52.08 Aligned_cols=37 Identities=16% Similarity=0.185 Sum_probs=29.1
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATA 198 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~ 198 (510)
++..+++.|+||+|||++|..++... +.+.++++..+
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~ 54 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE 54 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 45679999999999999998887543 66777777654
No 464
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=95.35 E-value=0.019 Score=54.98 Aligned_cols=40 Identities=28% Similarity=0.440 Sum_probs=31.8
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh-CCCeEEEecccccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV-NVPFTITDATALTQ 201 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l-~~p~~~~~~s~l~~ 201 (510)
.|.-+++.|+||+|||++++.+...+ ...++.+|..++..
T Consensus 14 ~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~ 54 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQ 54 (199)
T ss_dssp S-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGG
T ss_pred CCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHH
Confidence 56779999999999999999999988 77888999888764
No 465
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.34 E-value=0.049 Score=52.71 Aligned_cols=37 Identities=27% Similarity=0.236 Sum_probs=28.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---C------CCeEEEeccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---N------VPFTITDATA 198 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~------~p~~~~~~s~ 198 (510)
...-+.++||||+|||++|..++... + ...++++...
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 44679999999999999999988654 3 5667777654
No 466
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.33 E-value=0.091 Score=62.17 Aligned_cols=39 Identities=28% Similarity=0.436 Sum_probs=31.8
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCC--CeEEEeccccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNV--PFTITDATALT 200 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~--p~~~~~~s~l~ 200 (510)
++..+-|+||+||||+|+...|-+.++. --+.+|..++.
T Consensus 1015 ~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik 1055 (1228)
T KOG0055|consen 1015 AGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIK 1055 (1228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccc
Confidence 6778999999999999999999999843 45667666554
No 467
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.32 E-value=0.011 Score=61.58 Aligned_cols=36 Identities=31% Similarity=0.467 Sum_probs=25.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhC--CCeEEEecccc
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVN--VPFTITDATAL 199 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~--~p~~~~~~s~l 199 (510)
.-+.|.|||||||||+.|.||..-. .--+.++..++
T Consensus 32 ef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i 69 (352)
T COG3842 32 EFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDI 69 (352)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEC
Confidence 3466999999999999999997662 22344444443
No 468
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.32 E-value=0.037 Score=53.42 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=20.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHHh
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
..++|+||+|+|||++.+.++...
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~~~ 53 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIALLA 53 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 569999999999999999997443
No 469
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.29 E-value=0.032 Score=63.80 Aligned_cols=26 Identities=27% Similarity=0.590 Sum_probs=23.1
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
..+.+++.|+||||||++++++.+.+
T Consensus 337 ~~~~~iitGgpGTGKTt~l~~i~~~~ 362 (720)
T TIGR01448 337 QHKVVILTGGPGTGKTTITRAIIELA 362 (720)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998777
No 470
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.29 E-value=0.17 Score=59.14 Aligned_cols=35 Identities=29% Similarity=0.250 Sum_probs=27.6
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEecc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDAT 197 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s 197 (510)
..+-+++.||+|.|||+++..+++..+ ++..++..
T Consensus 31 ~~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~ 65 (903)
T PRK04841 31 NYRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLD 65 (903)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecC
Confidence 345699999999999999999887666 66555543
No 471
>PRK14700 recombination factor protein RarA; Provisional
Probab=95.27 E-value=0.055 Score=54.93 Aligned_cols=70 Identities=14% Similarity=0.222 Sum_probs=55.7
Q ss_pred CchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHH
Q 038067 357 LIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENI 436 (510)
Q Consensus 357 ~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~ 436 (510)
++|++++|+. ++.|.+|+.+++..++++.+.. .. ......+.++++++++|++.+ ++.+|..-+++|..
T Consensus 23 vn~ALlSR~~-v~~l~~L~~~di~~il~ral~~----~~---~~~~~~~~i~~~al~~ia~~a---~GDaR~aLN~LE~a 91 (300)
T PRK14700 23 LNDALVSRLF-ILRLKRLSLVATQKLIEKALSQ----DE---VLAKHKFKIDDGLYNAMHNYN---EGDCRKILNLLERM 91 (300)
T ss_pred ecHhhhhhhh-eeeecCCCHHHHHHHHHHHHHh----hh---ccCCcCCCcCHHHHHHHHHhc---CCHHHHHHHHHHHH
Confidence 7889999994 5699999999999999974422 11 112345789999999999987 77899999999986
Q ss_pred H
Q 038067 437 L 437 (510)
Q Consensus 437 l 437 (510)
+
T Consensus 92 ~ 92 (300)
T PRK14700 92 F 92 (300)
T ss_pred H
Confidence 5
No 472
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=95.27 E-value=0.018 Score=54.96 Aligned_cols=30 Identities=33% Similarity=0.467 Sum_probs=25.7
Q ss_pred eEEEEccCCChHHHHHHHHHHHhCCCeEEEe
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIVNVPFTITD 195 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~ 195 (510)
.+.++|++|+|||++++.+++ +|.+++..|
T Consensus 4 ~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D 33 (194)
T PRK00081 4 IIGLTGGIGSGKSTVANLFAE-LGAPVIDAD 33 (194)
T ss_pred EEEEECCCCCCHHHHHHHHHH-cCCEEEEec
Confidence 589999999999999999998 777655544
No 473
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.26 E-value=0.21 Score=46.28 Aligned_cols=23 Identities=30% Similarity=0.226 Sum_probs=19.3
Q ss_pred eEEEEccCCChHHHHHHHHHHHh
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
-+.+|+++|.|||++|-.+|-..
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra 26 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRA 26 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47888999999999998887544
No 474
>PRK00023 cmk cytidylate kinase; Provisional
Probab=95.25 E-value=0.016 Score=56.79 Aligned_cols=30 Identities=33% Similarity=0.486 Sum_probs=26.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhCCCeEE
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVNVPFTI 193 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~ 193 (510)
..+.+.||+|+|||++|+.||+.++.+++.
T Consensus 5 ~~i~i~g~~gsGksti~~~la~~~~~~~~~ 34 (225)
T PRK00023 5 IVIAIDGPAGSGKGTVAKILAKKLGFHYLD 34 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 579999999999999999999999877644
No 475
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=95.25 E-value=0.045 Score=57.70 Aligned_cols=26 Identities=35% Similarity=0.442 Sum_probs=23.6
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
..+.++++||+|+|||++++++.+.+
T Consensus 148 ~~GlilI~G~TGSGKTT~l~al~~~i 173 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLAASIYQHC 173 (372)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 55689999999999999999998877
No 476
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.23 E-value=0.11 Score=54.11 Aligned_cols=37 Identities=30% Similarity=0.269 Sum_probs=27.4
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---------CCCeEEEeccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---------NVPFTITDATA 198 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---------~~p~~~~~~s~ 198 (510)
...-..++||||||||.+|-.++-.. +...+++|...
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~ 170 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEG 170 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCC
Confidence 34568899999999999999886322 24667777644
No 477
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.23 E-value=0.035 Score=52.48 Aligned_cols=20 Identities=25% Similarity=0.527 Sum_probs=18.6
Q ss_pred EEEEccCCChHHHHHHHHHH
Q 038067 166 VLLMGPTGSGKTLLAKTLAR 185 (510)
Q Consensus 166 vLL~GPpGtGKT~lAr~lA~ 185 (510)
++|+||.|+|||++.|.++-
T Consensus 2 ~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78999999999999999983
No 478
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.23 E-value=0.082 Score=51.67 Aligned_cols=25 Identities=20% Similarity=0.449 Sum_probs=21.4
Q ss_pred cCceEEEEccCCChHHHHHHHHHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~ 186 (510)
....++|+||.|+|||++.+.++..
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~ 53 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVI 53 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHH
Confidence 3456899999999999999998854
No 479
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.18 E-value=0.053 Score=58.20 Aligned_cols=39 Identities=23% Similarity=0.311 Sum_probs=31.4
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh----CCCeEEEeccccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV----NVPFTITDATALT 200 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l----~~p~~~~~~s~l~ 200 (510)
.+..++++||+|+|||+++..+|..+ +.++..+++..+.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R 140 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYR 140 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccc
Confidence 46789999999999999998888764 5677777777553
No 480
>PLN02348 phosphoribulokinase
Probab=95.16 E-value=0.074 Score=56.15 Aligned_cols=26 Identities=19% Similarity=0.369 Sum_probs=23.4
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhC
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVN 188 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~ 188 (510)
+.-|-+.|+||+||||+|+.|++.++
T Consensus 49 p~IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 49 TVVIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34688999999999999999999995
No 481
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=95.15 E-value=0.053 Score=53.55 Aligned_cols=24 Identities=33% Similarity=0.570 Sum_probs=21.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHHh
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
+.++++||..+|||++.|.++-..
T Consensus 44 ~~~iiTGpN~sGKSt~lk~i~~~~ 67 (235)
T PF00488_consen 44 RIIIITGPNMSGKSTFLKQIGLIV 67 (235)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHH
T ss_pred eEEEEeCCCccchhhHHHHHHHHh
Confidence 569999999999999999998655
No 482
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=95.14 E-value=0.012 Score=54.20 Aligned_cols=26 Identities=38% Similarity=0.546 Sum_probs=23.9
Q ss_pred CCChHHHHHHHHHHHhCCCeEEEecc
Q 038067 172 TGSGKTLLAKTLARIVNVPFTITDAT 197 (510)
Q Consensus 172 pGtGKT~lAr~lA~~l~~p~~~~~~s 197 (510)
||+|||++++.||+.++.||+..|..
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~ 26 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDE 26 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHH
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHH
Confidence 79999999999999999999888764
No 483
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.12 E-value=0.032 Score=52.56 Aligned_cols=29 Identities=41% Similarity=0.698 Sum_probs=25.0
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhCCCe
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVNVPF 191 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~~p~ 191 (510)
++.++|+||+|+|||+|++.|.+.+...|
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~ 30 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKF 30 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhccccc
Confidence 36799999999999999999999885444
No 484
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.12 E-value=0.031 Score=55.07 Aligned_cols=37 Identities=24% Similarity=0.390 Sum_probs=28.5
Q ss_pred cCceEEEEccCCChHHHHHHHHHHH-h--CCCeEEEeccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARI-V--NVPFTITDATA 198 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~-l--~~p~~~~~~s~ 198 (510)
++..+|++||||+|||++|..++.. + |.+.++++..+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE 59 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 5578999999999999999876543 3 66777777544
No 485
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=95.10 E-value=0.024 Score=54.78 Aligned_cols=34 Identities=21% Similarity=0.300 Sum_probs=28.8
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEe
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITD 195 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~ 195 (510)
.+..+-|+|++|||||++++.+++.+|.+++..|
T Consensus 5 ~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD 38 (204)
T PRK14733 5 NTYPIGITGGIASGKSTATRILKEKLNLNVVCAD 38 (204)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHcCCeEEecc
Confidence 4457999999999999999999998888865444
No 486
>PRK06761 hypothetical protein; Provisional
Probab=95.07 E-value=0.023 Score=57.59 Aligned_cols=32 Identities=25% Similarity=0.289 Sum_probs=26.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhCCCeEEEe
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVNVPFTITD 195 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~ 195 (510)
.-+++.||||+||||+++.+++.+....+.++
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~ 35 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEVE 35 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCceEEE
Confidence 35999999999999999999999965444333
No 487
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=95.06 E-value=0.027 Score=52.82 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=21.3
Q ss_pred EEEEccCCChHHHHHHHHHHHh
Q 038067 166 VLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 166 vLL~GPpGtGKT~lAr~lA~~l 187 (510)
+.|.|++|+|||++++.|++.+
T Consensus 3 I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999998
No 488
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=95.04 E-value=0.024 Score=60.39 Aligned_cols=32 Identities=31% Similarity=0.373 Sum_probs=27.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEE
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTI 193 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~ 193 (510)
-...|+|+|++|||||||+++||+.+|.+.+.
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~ 249 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIFNTTSAW 249 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Confidence 44689999999999999999999999877543
No 489
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.04 E-value=0.025 Score=61.21 Aligned_cols=37 Identities=22% Similarity=0.255 Sum_probs=29.3
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATA 198 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~ 198 (510)
+...+++.|+||+|||+++..++..+ +.+.++++..+
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EE 132 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEE 132 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcC
Confidence 44679999999999999999987765 45777777643
No 490
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=95.02 E-value=0.022 Score=53.63 Aligned_cols=37 Identities=24% Similarity=0.471 Sum_probs=31.8
Q ss_pred eEEEEccCCChHHHHHHHHHHHhCCCeEEEecccccc
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQ 201 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~ 201 (510)
-|+|.|+|-+|||++|++|.+.+..||+.+....+..
T Consensus 3 iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~ 39 (174)
T PF07931_consen 3 IIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVD 39 (174)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHh
Confidence 5999999999999999999999999999998777664
No 491
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.00 E-value=0.033 Score=54.52 Aligned_cols=37 Identities=16% Similarity=0.225 Sum_probs=29.0
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh----CCCeEEEeccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV----NVPFTITDATA 198 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l----~~p~~~~~~s~ 198 (510)
++.-+++.|+||+|||+++..++... +.+++.++...
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~ 52 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEM 52 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCC
Confidence 34579999999999999998876554 66777777654
No 492
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=95.00 E-value=0.07 Score=63.64 Aligned_cols=91 Identities=19% Similarity=0.230 Sum_probs=53.0
Q ss_pred cCceEEEEccCCChHHHH-HHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhch----------hHHHhcCc
Q 038067 162 EKSNVLLMGPTGSGKTLL-AKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADF----------DVEAAQRG 230 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~l-Ar~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~----------~~~~~~~~ 230 (510)
..++++++||||+|||++ +-+|-..+-..++.++-+.-+.. ...+.-+-+...+ ....-...
T Consensus 1493 t~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~T-------~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~l 1565 (3164)
T COG5245 1493 TLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTMT-------PSKLSVLERETEYYPNTGVVRLYPKPVVKDL 1565 (3164)
T ss_pred ccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccCC-------HHHHHHHHhhceeeccCCeEEEccCcchhhe
Confidence 678999999999999995 45666666566666665543321 1122222221111 00112457
Q ss_pred EEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhh
Q 038067 231 IVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLE 266 (510)
Q Consensus 231 Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~le 266 (510)
|+|.|||+ ++..+ +. .+..|.-.|.+++|
T Consensus 1566 VLFcDeIn-Lp~~~--~y----~~~~vI~FlR~l~e 1594 (3164)
T COG5245 1566 VLFCDEIN-LPYGF--EY----YPPTVIVFLRPLVE 1594 (3164)
T ss_pred EEEeeccC-Ccccc--cc----CCCceEEeeHHHHH
Confidence 99999999 65432 22 22236666778887
No 493
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.97 E-value=0.037 Score=55.18 Aligned_cols=37 Identities=30% Similarity=0.424 Sum_probs=30.2
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATA 198 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~ 198 (510)
.++.+|++|+||||||.++..++... |.|.+.+...+
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e 61 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEE 61 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecC
Confidence 55789999999999999998877555 67887777654
No 494
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.96 E-value=0.032 Score=54.44 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=20.9
Q ss_pred EEEEccCCChHHHHHHHHHHHhC
Q 038067 166 VLLMGPTGSGKTLLAKTLARIVN 188 (510)
Q Consensus 166 vLL~GPpGtGKT~lAr~lA~~l~ 188 (510)
+-+.||+|+||||+|+.|+..+.
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHh
Confidence 56889999999999999999883
No 495
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.96 E-value=0.097 Score=56.21 Aligned_cols=37 Identities=30% Similarity=0.348 Sum_probs=28.5
Q ss_pred CceEEEEccCCChHHHHHHHHHHHh-----CCCeEEEecccc
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIV-----NVPFTITDATAL 199 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l-----~~p~~~~~~s~l 199 (510)
+..++|+||+|+|||+++..||..+ +..+..+++..+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~ 262 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTY 262 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCcc
Confidence 4689999999999999988887644 346666776553
No 496
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.94 E-value=0.034 Score=54.16 Aligned_cols=35 Identities=23% Similarity=0.268 Sum_probs=26.6
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEec
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDA 196 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~ 196 (510)
....+++.||||+|||+++..++... +.+.+.++.
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 45679999999999999999876432 455666654
No 497
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=94.92 E-value=0.05 Score=59.41 Aligned_cols=27 Identities=37% Similarity=0.484 Sum_probs=22.5
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhC
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVN 188 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~ 188 (510)
+.+-++++||+|+|||++..++.+.++
T Consensus 241 ~~GlilitGptGSGKTTtL~a~L~~l~ 267 (486)
T TIGR02533 241 PHGIILVTGPTGSGKTTTLYAALSRLN 267 (486)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHhccC
Confidence 445689999999999999998777664
No 498
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.91 E-value=0.13 Score=50.17 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=21.5
Q ss_pred CceEEEEccCCChHHHHHHHHHHHh
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
...++|+||.|.|||++.+.++-..
T Consensus 30 ~~~~~itG~n~~gKs~~l~~i~~~~ 54 (218)
T cd03286 30 PRILVLTGPNMGGKSTLLRTVCLAV 54 (218)
T ss_pred CcEEEEECCCCCchHHHHHHHHHHH
Confidence 4579999999999999999988653
No 499
>PRK10436 hypothetical protein; Provisional
Probab=94.89 E-value=0.052 Score=58.86 Aligned_cols=27 Identities=37% Similarity=0.584 Sum_probs=23.1
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhC
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVN 188 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~ 188 (510)
+.+.+|++||+|+||||+..++-+.++
T Consensus 217 ~~GliLvtGpTGSGKTTtL~a~l~~~~ 243 (462)
T PRK10436 217 PQGLILVTGPTGSGKTVTLYSALQTLN 243 (462)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHhhC
Confidence 567899999999999999888777764
No 500
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=94.89 E-value=0.12 Score=58.81 Aligned_cols=38 Identities=29% Similarity=0.389 Sum_probs=28.6
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCC--CeEEEecccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNV--PFTITDATAL 199 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~--p~~~~~~s~l 199 (510)
++..+.++|++|||||||+|.+...+.. --+.+|.-++
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl 537 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDL 537 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeH
Confidence 5567999999999999999999987721 2345554443
Done!